HHsearch alignment for GI: 254780810 and conserved domain: smart00382

>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

Probab=98.15  E-value=6e-06  Score=58.25  Aligned_cols=96  Identities=26%  Similarity=0.227  Sum_probs=68.1

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             02312220487787899999999998611886469999508787899999984034278236678888999999999999
Q gi|254780810|r  173 KGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAK  252 (423)
Q Consensus       173 ~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~  252 (423)
T Consensus         1 ~~~~ill~G~~GsGKTtl~~~la~~~~~~~---~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~   73 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQLL----LIIVGGKKASGSGELRLRLALAL   73 (148)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHCCCC---CCEEEEEHHHHHHHHHHHHH----HHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             997899999997029999999998726689---96899875998988898765----30001122105199999999999


Q ss_pred             HHHHHHCCCCEEEEEECHHHHHHHHHC
Q ss_conf             999997799289998163898776200
Q gi|254780810|r  253 AKCLVEYGLDVVILLDSITRLCRAYNV  279 (423)
Q Consensus       253 a~~~~e~G~dVll~~DslTR~ArA~~~  279 (423)
T Consensus        74 ~~~~~----~~viiiDei~~~~~~~~~   96 (148)
T smart00382       74 ARKLK----PDVLILDEITSLLDAEQE   96 (148)
T ss_pred             HHHCC----CCEEEEECCHHHCCCCCH
T ss_conf             98449----989998275021476207