BLAST/PSIBLAST alignment of GI: 254780810 and GI: 15890078 at iteration 1
>gi|15890078|ref|NP_355759.1| transcription termination factor Rho [Agrobacterium tumefaciens str. C58] Length = 421
>gi|15158063|gb|AAK88544.1| transcription termination factor Rho [Agrobacterium tumefaciens str. C58] Length = 421
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/420 (82%), Positives = 387/420 (92%)
Query: 1 MSEMKLQELKNKSPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDVEIIGEGVIEV 60
M+EMKLQELK+KSPT LL FAESLE+ENA+ MRKQELMF+ILK+L+ +DVEIIGEGV+EV
Sbjct: 1 MAEMKLQELKSKSPTDLLTFAESLEVENASTMRKQELMFAILKILASQDVEIIGEGVVEV 60
Query: 61 LQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVN 120
LQDGFGFLRS +ANYL GPDDIY+SPSQI+ FSLKTGDTVEG IR P+EGERYFALLKVN
Sbjct: 61 LQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVN 120
Query: 121 AINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIV 180
INFD PE++R+K+HFDNLTPLYP++RF MEL P +KD+SSRVIDL+AP+GKGQR LIV
Sbjct: 121 TINFDDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSSRVIDLVAPLGKGQRGLIV 180
Query: 181 APPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAA 240
APPRTGKT+LLQNIAHSI NHPECYLIVLLIDERPEEVTDMQRSV+GEV+SSTFDE A
Sbjct: 181 APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAV 240
Query: 241 RHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRP 300
RHVQVAEMVI KAK LVE+G DVVILLDSITRL RAYN ++PSSGK+LTGGVDANALQRP
Sbjct: 241 RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP 300
Query: 301 KRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPA 360
KRFFGAARNI+EGGSLTII TAL+DTGSRMDEVIFEEFKGTGNSEIVL+RK+ADKRIFPA
Sbjct: 301 KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA 360
Query: 361 MDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQTKDNKDFFYSMN 420
+DI+KSGTRKEDLLV RQDLQK+F+LRRI++ M + DAIEFLIDKLKQTK N DFF SMN
Sbjct: 361 LDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTMDAIEFLIDKLKQTKTNSDFFESMN 420