RPSBLAST alignment for GI: 254780810 and conserved domain: TIGR03324

>gnl|CDD|132367 TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase. Length = 497

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 27/134 (20%)

Query: 163 RVIDLIAPIGKGQRSLIVAPPRTGKT-ILLQNIAHSIKKNHPECYLIVLLIDERPEEVTD 221
           +VID + PIG+GQR LI+   +TGKT I +  I +   +N      I   I +R   V  
Sbjct: 151 KVIDALIPIGRGQRELILGDRQTGKTAIAIDTILNQKGRN---VLCIYCAIGQRASAV-- 205

Query: 222 MQRSVQGEVISSTFDESAARH--VQVAE-------MVIAK------AKCLVEYGLDVVIL 266
                  +V+++  +  A  +  V V E         IA        +  +E G DV+I+
Sbjct: 206 ------AKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAATSIGEHFMEQGRDVLIV 259

Query: 267 LDSITRLCRAYNVL 280
            D +T+  RAY  L
Sbjct: 260 YDDLTQHARAYREL 273