RPSBLAST alignment for GI: 254780810 and conserved domain: TIGR00767
>gnl|CDD|162030 TIGR00767, rho, transcription termination factor Rho. Members of this family differ in the specificity of RNA binding. Length = 415
Score = 693 bits (1791), Expect = 0.0
Identities = 280/418 (66%), Positives = 351/418 (83%), Gaps = 3/418 (0%)
Query: 4 MKLQELKNKSPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDVEIIGEGVIEVLQD 63
++ELKN +L AE L +EN + ++KQEL+F+ILK + + I GEGV+E+L D
Sbjct: 1 YNIEELKNMPLEELRKLAEQLGVENTSSLKKQELIFAILKAHAEQGGLIFGEGVLEILPD 60
Query: 64 GFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAIN 123
GFGFLRSPD++YL GPDDIYVSPSQI+ F+L+TGDT+EG IR+P+EGERYFALLKV ++N
Sbjct: 61 GFGFLRSPDSSYLPGPDDIYVSPSQIRRFNLRTGDTIEGQIRSPKEGERYFALLKVESVN 120
Query: 124 FDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPP 183
D PE+ +N++ F+NLTPLYP++R +E +D+S+RV+DL APIGKGQR LIVAPP
Sbjct: 121 GDDPEKAKNRVLFENLTPLYPNERLRLET---STEDLSTRVLDLFAPIGKGQRGLIVAPP 177
Query: 184 RTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHV 243
+ GKT+LLQ IA +I +NHPE LIVLLIDERPEEVTDMQRSV+GEV++STFDE A+RHV
Sbjct: 178 KAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHV 237
Query: 244 QVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRF 303
QVAEMVI KAK LVE+ DVVILLDSITRL RAYN + P+SGK+L+GGVDANAL RPKRF
Sbjct: 238 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLSGGVDANALHRPKRF 297
Query: 304 FGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDI 363
FGAARNI+EGGSLTII TAL+DTGSRMDEVIFEEFKGTGN E+ L+RK+AD+RIFPA+DI
Sbjct: 298 FGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLADRRIFPAIDI 357
Query: 364 IKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQTKDNKDFFYSMNK 421
KSGTRKE+LL+ ++LQK+++LR+I+S M+S +A+EFLI KLK+TK N++F SM +
Sbjct: 358 KKSGTRKEELLLTPEELQKIWVLRKIISPMDSIEAMEFLISKLKKTKTNEEFLESMKR 415