RPSBLAST alignment for GI: 254780810 and conserved domain: cd01128

>gnl|CDD|29994 cd01128, rho_factor, Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.. Length = 249

 Score =  421 bits (1083), Expect = e-118
 Identities = 184/249 (73%), Positives = 226/249 (90%)

Query: 159 DISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEE 218
           ++S+RV+DL APIGKGQR LIVAPP+ GKT LLQ+IA++I KNHPE YLIVLLIDERPEE
Sbjct: 1   ELSTRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEE 60

Query: 219 VTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYN 278
           VTDMQRSV+GEVI+STFDE   RHVQVAEMV+ KAK LVE+G DVVILLDSITRL RAYN
Sbjct: 61  VTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYN 120

Query: 279 VLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEF 338
            ++P SGKIL+GGVDANAL +PKRFFGAARNI+EGGSLTII TALVDTGSRMD+VIFEEF
Sbjct: 121 TVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATALVDTGSRMDDVIFEEF 180

Query: 339 KGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDA 398
           KGTGN E+VL+R++A++RIFPA+DI+KSGTRKE+LL++ ++LQ++++LRR++S M+  +A
Sbjct: 181 KGTGNMELVLDRRLAERRIFPAIDILKSGTRKEELLLDPEELQRMWLLRRVLSDMDPIEA 240

Query: 399 IEFLIDKLK 407
           +EFL+ KL+
Sbjct: 241 MEFLLKKLR 249