RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780811|ref|YP_003065224.1| hypothetical protein
CLIBASIA_03510 [Candidatus Liberibacter asiaticus str. psy62]
         (178 letters)



>gnl|CDD|146343 pfam03653, UPF0093, Uncharacterized protein family (UPF0093). 
          Length = 147

 Score =  154 bits (391), Expect = 2e-38
 Identities = 65/140 (46%), Positives = 94/140 (67%), Gaps = 4/140 (2%)

Query: 43  IKSIHILSVISWMAGLLYMPRIFVYHSLSAP-DTDQYKTFEIMEERLFKVIMNPAMILSW 101
           IK++HI+ VISWMAGL Y+PR+FVYH+ +AP   +  + F+IME RL + IMNPAMIL+W
Sbjct: 8   IKALHIIFVISWMAGLFYLPRLFVYHAEAAPGSDESDEIFKIMERRLLRYIMNPAMILTW 67

Query: 102 VCG---LYLAWKTFYIHIGWLRLKMISVLFLSFYHVYLSFVMRKFRDKKLFHSPKYFKII 158
           V G   L +         GWL +K+  VL L+ YH +L    + F   +   S ++++I+
Sbjct: 68  VFGLLLLVITPGLLDWSSGWLHVKLALVLLLTGYHGWLGKYRKDFAAGENTRSGRFYRIL 127

Query: 159 NEIPTLIMIIIVFLSVIKPF 178
           NE+PTL++I+IV L V+KPF
Sbjct: 128 NEVPTLLLIVIVILVVVKPF 147


>gnl|CDD|32164 COG1981, COG1981, Predicted membrane protein [Function unknown].
          Length = 149

 Score =  129 bits (326), Expect = 4e-31
 Identities = 59/139 (42%), Positives = 92/139 (66%), Gaps = 3/139 (2%)

Query: 43  IKSIHILSVISWMAGLLYMPRIFVYHSLSAPDTDQYKTFEIMEERLFKVIMNPAMILSWV 102
           +K+ H+++VISWMAGL Y+PR+FVYH+ +   ++  +T ++ME RL++ IMNPAM+++ +
Sbjct: 11  VKAFHLIAVISWMAGLFYLPRLFVYHAEADGGSELVETLKVMERRLYRFIMNPAMLVTLI 70

Query: 103 CGLYL---AWKTFYIHIGWLRLKMISVLFLSFYHVYLSFVMRKFRDKKLFHSPKYFKIIN 159
            GL L       +    GWL  K+  VL L  YH Y   +++KF   +   S +++++ N
Sbjct: 71  FGLLLLLAEPFIYGFGSGWLHAKLTLVLLLLGYHGYCGRLLKKFARGENVRSARFYRVFN 130

Query: 160 EIPTLIMIIIVFLSVIKPF 178
           EIPTL+MI IV L V+KPF
Sbjct: 131 EIPTLLMIAIVILVVVKPF 149


>gnl|CDD|30690 COG0342, SecD, Preprotein translocase subunit SecD [Intracellular
           trafficking and secretion].
          Length = 506

 Score = 26.9 bits (59), Expect = 2.8
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 10  GKKAQAIAFIALFVFLFLSLLCFFFLTSQFNLCIKSIHILSVISWMAGLLYMPRI 64
           G  A  I    + VF+ L       + +   L +  + IL+V+S +   L +P I
Sbjct: 345 GLIAGLIGLALVAVFMLLYYRLAGVIAAIA-LGLNGVLILAVLSLLGATLTLPGI 398


>gnl|CDD|100003 cd05844, GT1_like_7, Glycosyltransferases catalyze the transfer of
           sugar moieties from activated donor molecules to
           specific acceptor molecules, forming glycosidic bonds.
           The acceptor molecule can be a lipid, a protein, a
           heterocyclic compound, or another carbohydrate residue.
           This group of glycosyltransferases is most closely
           related to the previously defined glycosyltransferase
           family 1 (GT1). The members of this family may transfer
           UDP, ADP, GDP, or CMP linked sugars. The diverse
           enzymatic activities among members of this family
           reflect a wide range of biological functions. The
           protein structure available for this family has the GTB
           topology, one of the two protein topologies observed for
           nucleotide-sugar-dependent glycosyltransferases. GTB
           proteins have distinct N- and C- terminal domains each
           containing a typical Rossmann fold. The two domains have
           high structural homology despite minimal sequence
           homology. The large cleft that separates the two domains
           includes the catalytic center and permits a high degree
           of flexibility..
          Length = 367

 Score = 26.8 bits (60), Expect = 3.6
 Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 4/27 (14%)

Query: 51  VISWMAGLLYMPRIFVYHSLSAPDTDQ 77
           V   M       RIF+  S++AP  D 
Sbjct: 258 VRELMRR----ARIFLQPSVTAPSGDA 280


>gnl|CDD|38741 KOG3533, KOG3533, KOG3533, Inositol 1,4,5-trisphosphate receptor
            [Signal transduction mechanisms].
          Length = 2706

 Score = 26.5 bits (58), Expect = 4.3
 Identities = 8/53 (15%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 1    MKFFLSDSIGKKAQAIAFIALFVFLFLSLLCFFFLTSQFNLCIKSIHILSVIS 53
            +  +L    G +    + I   +   + +    ++    NL  K +H++S + 
Sbjct: 2304 IAHYLRKIYGIRTILASLILRLISS-IGVTPTLYILGALNLVNKIVHVVSFVG 2355


>gnl|CDD|36049 KOG0831, KOG0831, KOG0831, Acyl-CoA:diacylglycerol
          acyltransferase (DGAT) [Lipid transport and
          metabolism].
          Length = 334

 Score = 25.2 bits (55), Expect = 9.5
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 11/83 (13%)

Query: 8  SIGKKAQAIAFIALFVFLFLSLLCFFFLTSQFNLCIKSIHILSVISWMAGLLYMPRIFVY 67
             ++ Q +A +A F+F+ L L    F             +L    W   +LY   +++Y
Sbjct: 10 PWERRLQTLAVLA-FIFMTLILPLISFNVP--------FALLFTRFWPLAILYA--VWLY 58

Query: 68 HSLSAPDTDQYKTFEIMEERLFK 90
          +    P     ++       ++K
Sbjct: 59 YDRDTPKKGGRRSNWFRNWPIWK 81


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.338    0.148    0.471 

Gapped
Lambda     K      H
   0.267   0.0705    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,369,394
Number of extensions: 132856
Number of successful extensions: 1121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1084
Number of HSP's successfully gapped: 145
Length of query: 178
Length of database: 6,263,737
Length adjustment: 88
Effective length of query: 90
Effective length of database: 4,362,145
Effective search space: 392593050
Effective search space used: 392593050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 54 (24.6 bits)