RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780811|ref|YP_003065224.1| hypothetical protein
CLIBASIA_03510 [Candidatus Liberibacter asiaticus str. psy62]
         (178 letters)



>2a1k_A GP32 single stranded DNA binding protein; Zn2+ binding
           subdomain, 5-stranded beta-sheet, OB fold; 2.00A
           {Enterobacteria phage RB69} (A:)
          Length = 233

 Score = 27.1 bits (60), Expect = 1.3
 Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 68  HSLSA-PDTDQYKTFEIMEERLFKVIMNPAM 97
             LS     D++K+FE +  +  +V+   A+
Sbjct: 194 VDLSEMTSKDKFKSFEELNTKFNQVLGTAAL 224


>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal
           binding protein, calcium, calcium/phospholipid-binding;
           1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A
           1i4a_A 1aow_A (A:89-247)
          Length = 159

 Score = 24.8 bits (53), Expect = 7.1
 Identities = 11/104 (10%), Positives = 28/104 (26%)

Query: 66  VYHSLSAPDTDQYKTFEIMEERLFKVIMNPAMILSWVCGLYLAWKTFYIHIGWLRLKMIS 125
           +  ++    TD+    EI+  R  + I           G  L            +  ++S
Sbjct: 10  LRRAMKGAGTDEGCLIEILASRNPEEIRRINQTYQQQYGRSLEEDICSDTSFMFQRVLVS 69

Query: 126 VLFLSFYHVYLSFVMRKFRDKKLFHSPKYFKIINEIPTLIMIII 169
           +                 +D +  +     +   +    + I+ 
Sbjct: 70  LTAGGRDEGNYLDDALVKQDAQDLYEAGEKRWGTDEVKFLSILC 113


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.338    0.148    0.471 

Gapped
Lambda     K      H
   0.267   0.0580    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,363,849
Number of extensions: 57555
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 30
Length of query: 178
Length of database: 4,956,049
Length adjustment: 83
Effective length of query: 95
Effective length of database: 2,150,234
Effective search space: 204272230
Effective search space used: 204272230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 52 (24.1 bits)