BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780811|ref|YP_003065224.1| hypothetical protein
CLIBASIA_03510 [Candidatus Liberibacter asiaticus str. psy62]
         (178 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780811|ref|YP_003065224.1| hypothetical protein CLIBASIA_03510 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 178

 Score =  355 bits (910), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MKFFLSDSIGKKAQAIAFIALFVFLFLSLLCFFFLTSQFNLCIKSIHILSVISWMAGLLY 60
           MKFFLSDSIGKKAQAIAFIALFVFLFLSLLCFFFLTSQFNLCIKSIHILSVISWMAGLLY
Sbjct: 1   MKFFLSDSIGKKAQAIAFIALFVFLFLSLLCFFFLTSQFNLCIKSIHILSVISWMAGLLY 60

Query: 61  MPRIFVYHSLSAPDTDQYKTFEIMEERLFKVIMNPAMILSWVCGLYLAWKTFYIHIGWLR 120
           MPRIFVYHSLSAPDTDQYKTFEIMEERLFKVIMNPAMILSWVCGLYLAWKTFYIHIGWLR
Sbjct: 61  MPRIFVYHSLSAPDTDQYKTFEIMEERLFKVIMNPAMILSWVCGLYLAWKTFYIHIGWLR 120

Query: 121 LKMISVLFLSFYHVYLSFVMRKFRDKKLFHSPKYFKIINEIPTLIMIIIVFLSVIKPF 178
           LKMISVLFLSFYHVYLSFVMRKFRDKKLFHSPKYFKIINEIPTLIMIIIVFLSVIKPF
Sbjct: 121 LKMISVLFLSFYHVYLSFVMRKFRDKKLFHSPKYFKIINEIPTLIMIIIVFLSVIKPF 178


>gi|254780142|ref|YP_003064555.1| DNA-directed RNA polymerase subunit beta' [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1398

 Score = 24.6 bits (52), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 67  YHSLSAPDTDQYKTFEIMEERLF-KVIMNPAMILSWVCGLY 106
           Y  +  P+T  Y+TF+   + LF   I  P      +CG Y
Sbjct: 36  YGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECICGKY 76


>gi|254780226|ref|YP_003064639.1| translation-associated GTPase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 367

 Score = 22.7 bits (47), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 139 VMRKFRDKKLFHSPKYFKIINEIPTL 164
           V+R F+D+ + H       IN+I T+
Sbjct: 104 VLRCFKDENIIHVEGRIDPINDIETI 129


>gi|254780793|ref|YP_003065206.1| integral membrane protein MviN [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 518

 Score = 21.9 bits (45), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 3/30 (10%)

Query: 122 KMISVLFLSFYHVYLSFVMRKFRDKKLFHS 151
           K+  V +++FY   L+F+ R+   + +FH+
Sbjct: 36  KVTDVFYVAFY---LTFIFRRLAAEGIFHN 62


>gi|254780140|ref|YP_003064553.1| putative ABC transporter, substrate-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 452

 Score = 21.9 bits (45), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 3/29 (10%)

Query: 107 LAWKTFYIHIGWLRLKMISVLFLSFYHVY 135
           +  K +Y  +G     ++S+LF SF+ +Y
Sbjct: 1   MESKNYYTSVGLF---VVSILFFSFFSIY 26


>gi|254780482|ref|YP_003064895.1| ribonuclease P [Candidatus Liberibacter asiaticus str. psy62]
          Length = 123

 Score = 21.6 bits (44), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 125 SVLFLSFYHVYLSFVMRKFRDKKLFHSPKYF 155
             LF+ F  +   FV R  R+K+ ++S K F
Sbjct: 89  DALFIPFKELCNHFVERVRRNKRSYYSGKNF 119


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.338    0.148    0.471 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,439
Number of Sequences: 1233
Number of extensions: 4462
Number of successful extensions: 26
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 15
length of query: 178
length of database: 328,796
effective HSP length: 68
effective length of query: 110
effective length of database: 244,952
effective search space: 26944720
effective search space used: 26944720
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 35 (18.1 bits)