HHsearch alignment for GI: 254780812 and conserved domain: COG0159
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism].
Probab=95.13 E-value=0.28 Score=29.88 Aligned_cols=132 Identities=17% Similarity=0.230 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHCC----CHHHHHC-CHHHHHHHHHHHHHHCCCCEEEECCCCEECCHHHCCCEEEECCCCCCCCCCCCH
Q ss_conf 34579999976155----3899842-799999987212876298726521332001043244337316887522233333
Q gi|254780812|r 30 RYLPEYRQIRKKFK----NFLDMCY-TPEYTVELTLQPIRRYNFDAAILFSDILVIADALGRNVRFVENEGPRMDPITTQ 104 (346)
Q Consensus 30 rylpey~~~r~~~~----~f~~~~~-~pela~evtl~p~~r~~~DaaIlFsDIl~~~ealG~~v~f~~~~GP~~~p~~~~ 104 (346)
T Consensus 3 r~~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~-i~~L~~~GaD~iE-----------LGvPfSDPvADGP~Iq~A~~r 70 (265)
T COG0159 3 RLDQKFAQLKAENRGALIPYVTAGDPDLETSLEI-IKTLVEAGADILE-----------LGVPFSDPVADGPTIQAAHLR 70 (265)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH-HHHHHHCCCCEEE-----------ECCCCCCCCCCCHHHHHHHHH
T ss_conf 4899999999737897488894889998999999-9999867988899-----------668888867668899998999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 55420567012344323787778764210245320111147999999996124677652467753013722289999999
Q gi|254780812|r 105 EIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFL 184 (346)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~l 184 (346)
T Consensus 71 AL-----~~g---~t~~~~lel~~~~r~~-~~~~Piv--------lm------------------~Y~Npi~~~Gie--- 112 (265)
T COG0159 71 AL-----AAG---VTLEDTLELVEEIRAK-GVKVPIV--------LM------------------TYYNPIFNYGIE--- 112 (265)
T ss_pred HH-----HCC---CCHHHHHHHHHHHHHC-CCCCCEE--------EE------------------EECCHHHHHHHH---
T ss_conf 99-----779---9889999999999861-8999889--------98------------------701188773599---
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHH
Q ss_conf 9999999777775498167843831100683567776
Q gi|254780812|r 185 SDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENY 221 (346)
Q Consensus 185 t~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f 221 (346)
T Consensus 113 -----~F~~~~~~~GvdGlivpD-----LP~ee~~~~ 139 (265)
T COG0159 113 -----KFLRRAKEAGVDGLLVPD-----LPPEESDEL 139 (265)
T ss_pred -----HHHHHHHHCCCCEEEECC-----CCHHHHHHH
T ss_conf -----999999975998798578-----986677789