HHsearch alignment for GI: 254780812 and conserved domain: TIGR01235
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=96.20 E-value=0.018 Score=38.26 Aligned_cols=150 Identities=15% Similarity=0.197 Sum_probs=81.1
Q ss_pred HHHCCCCCCCHHHHHHHHCCCHHHHHHHHH-----------HHH-------------HHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 961246776524677530137222899999-----------999-------------99999977777549816784383
Q gi|254780812|r 153 YMISGGFIKDHGQNRVFAYQNSRAFNWLLD-----------FLS-------------DVSAEYLIAQIHAGVDVIQIFDT 208 (346)
Q Consensus 153 YmieG~~sk~~~~~~~~~~~~p~~~~~ll~-----------~lt-------------~~~~~yl~~Qi~aGad~iqIFDs 208 (346)
T Consensus 590 fSLE~WGGATFDVA~RFL~EDP--WeRL~~lR~~vPN~lfQMLLRgANaVGYtnYPDNvv~~Fv~qa~~~GiD~FRvFDs 667 (1169)
T TIGR01235 590 FSLECWGGATFDVAMRFLHEDP--WERLEDLRKEVPNILFQMLLRGANAVGYTNYPDNVVKKFVKQAAQSGIDIFRVFDS 667 (1169)
T ss_pred CEEHHCCCHHHHHHHHHCCCCH--HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 0002058611678765157883--79999998546852468887541000024775348999999888468307870011
Q ss_pred --------------------------CHHHCCHHHHHHHHCCCHHHH-----------------------------HHHH
Q ss_conf --------------------------110068356777612722689-----------------------------9998
Q gi|254780812|r 209 --------------------------HAGCLGEHEFENYAARSVGRI-----------------------------ISAV 233 (346)
Q Consensus 209 --------------------------~ag~Ls~~~f~~f~~p~~kkI-----------------------------~~~i 233 (346)
T Consensus 668 LN~l~~l~l~~dAv~~~gkv~EAAicYtGDil~~~r~KYdL~YYt~lA~eL~~aGaHIL~iKDMAGlLKP~AAk~L~~AL 747 (1169)
T TIGR01235 668 LNWLENLKLGMDAVKEAGKVVEAAICYTGDILDPARKKYDLKYYTNLAEELVKAGAHILGIKDMAGLLKPAAAKLLIKAL 747 (1169)
T ss_pred CCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHCCCHHHHHHHHHHHH
T ss_conf 13321020163677750997999975200326888974377889999999997098034301011244289999999999
Q ss_pred HHHCCCCEEECCCCCCCC-CHHHHH--CCCCCCEEE--CCCCCCHHHHHH--HCC-CEEEEC-CCCHHHHC-------CC
Q ss_conf 630886236024311000-013420--147872230--467799899997--079-846968-88846770-------99
Q gi|254780812|r 234 RRKYPNAKFISFAKGAGY-MLKNYR--RLTDSNAIG--LDWSVPLSFALE--LQK-EGPVQG-NLDPMRLV-------VG 297 (346)
Q Consensus 234 k~~~~~vpiI~f~~g~~~-~l~~~~--~~~g~d~is--iD~~~dl~~a~~--~~~-~~~lqG-NldP~~L~-------~~ 297 (346)
T Consensus 748 re~~PD~PiH~HTHDtSG~ava~~~aaveAGvDvvDvAv~smSG~T--SQPS~~a~~~aL~G~~~dpgln~~~v~~ls~Y 825 (1169)
T TIGR01235 748 REKIPDLPIHLHTHDTSGAAVASMLAAVEAGVDVVDVAVDSMSGLT--SQPSLGALVAALEGSERDPGLNVEDVRELSAY 825 (1169)
T ss_pred HHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEHHHHHHHCCCC--HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 7327998568626661268999999998758861145676410450--03338999997278989888898999898788
Q ss_pred HHHHHHHHH
Q ss_conf 889999999
Q gi|254780812|r 298 NQVMIDGVN 306 (346)
Q Consensus 298 ~e~i~~~~~ 306 (346)
T Consensus 826 We~~R~~Ya 834 (1169)
T TIGR01235 826 WEEVRKLYA 834 (1169)
T ss_pred HHHHHHHHH
T ss_conf 999974421