HHsearch alignment for GI: 254780812 and conserved domain: cd00465
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=100.00 E-value=0 Score=636.02 Aligned_cols=297 Identities=21% Similarity=0.259 Sum_probs=268.9
Q ss_pred CCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEE-CCCCEECCHHHCCCEEEECCCCCCCC
Q ss_conf 76146231234579999976155389984279999998721287629872652-13320010432443373168875222
Q gi|254780812|r 21 PIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAIL-FSDILVIADALGRNVRFVENEGPRMD 99 (346)
Q Consensus 21 PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIl-FsDIl~~~ealG~~v~f~~~~GP~~~ 99 (346)
T Consensus 1 p~~~~~~~~~~--~~~e~~---~~~~~~~~~~~~~~~iTl~p~~rf~~DAaIiffsDIL~ip~AlG~~v~f~~g~GP~~~ 75 (306)
T cd00465 1 PVQCEGQTGIM--EASETM---AISEEPGETSKAEWGITLVEPEEIPLDVIPVHEDDVLKVAQALGEWAFRYYSQAPSVP 75 (306)
T ss_pred CCCHHHHCCCC--CHHHHH---CCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCEECHHHCCCCEEEEECCCCCCC
T ss_conf 92011001555--254543---2677767898654238731510168885665388602187681995479507589899
Q ss_pred CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 33333554205670123443237877787642102453201111479999999961246776524677530137222899
Q gi|254780812|r 100 PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNW 179 (346)
Q Consensus 100 p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ 179 (346)
T Consensus 76 ~~~~~----------~~~~~l~~v~~~i~~~~~~--~~vpLIGFaGaPwTla~Ymieg~~sk~------~~~~~pe~~~~ 137 (306)
T cd00465 76 EIDEE----------EDPFREAPALEHITAVRSL--EEFPTAGAAGGPFTFTHHSMSMGDALM------ALYERPEAMHE 137 (306)
T ss_pred CCCCC----------HHHHHHHHHHHHHHHHHHC--CCCCEEEECCCHHHHHHHHHCCCHHHH------HHHHCHHHHHH
T ss_conf 87740----------5666447899999998635--786237645865999999983810899------98879999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH----HCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHH
Q ss_conf 99999999999977777549816784383110----06835677761272268999986308862360243110000134
Q gi|254780812|r 180 LLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAG----CLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKN 255 (346)
Q Consensus 180 ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag----~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~ 255 (346)
T Consensus 138 LL~~lt~~~i~yl~~Qi~aGAdavqiFDSWag~~~~~L~p~~~~~f~lp~~~~I~~~~~~--~~vPiI~F~~G~~~~~l~ 215 (306)
T cd00465 138 LIEYLTEFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAA--GEVPIVHHSCYDAADLLE 215 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEECCCHHHHHH
T ss_conf 999999999999999998488999974343342311039999999999999999997457--999889983286677899
Q ss_pred HHCCCCCCEEECCCCC-CHHHHHH-HCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC--H
Q ss_conf 2014787223046779-9899997-0798469688884677099889999999999973259928960897633668--8
Q gi|254780812|r 256 YRRLTDSNAIGLDWSV-PLSFALE-LQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVD--P 331 (346)
Q Consensus 256 ~~~~~g~d~isiD~~~-dl~~a~~-~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp--~ 331 (346)
T Consensus 216 ~~~~~g~d~i~lD~~~~d~~~a~~~~~~~~~lQGNLDP~~L~~~~e~i~~~v~~il~~~g-~~~IfNLGHGi~P~~d~~p 294 (306)
T cd00465 216 EMIQLGVDVISFDMTVNEPKEAIEKVGEKKTLVGGVDPGYLPATDEECIAKVEELVERLG-PHYIINPDCGLGPDSDYKP 294 (306)
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHCCCEEEECCCCCHHHCCCHHHHHHHHHHHHHHHC-CCCEEECCCCCCCCCCCCH
T ss_conf 998619867997367778999999818991587089846765998999999999999848-9877978998899999981
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999973
Q gi|254780812|r 332 KNVLDLVKTVRS 343 (346)
Q Consensus 332 eNv~~~v~~vr~ 343 (346)
T Consensus 295 e~v~~~v~~V~e 306 (306)
T cd00465 295 EHLRAVVQLVDE 306 (306)
T ss_pred HHHHHHHHHHCC
T ss_conf 799999998549