HHsearch alignment for GI: 254780812 and conserved domain: cd00465

>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=100.00  E-value=0  Score=636.02  Aligned_cols=297  Identities=21%  Similarity=0.259  Sum_probs=268.9

Q ss_pred             CCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEE-CCCCEECCHHHCCCEEEECCCCCCCC
Q ss_conf             76146231234579999976155389984279999998721287629872652-13320010432443373168875222
Q gi|254780812|r   21 PIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAIL-FSDILVIADALGRNVRFVENEGPRMD   99 (346)
Q Consensus        21 PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIl-FsDIl~~~ealG~~v~f~~~~GP~~~   99 (346)
T Consensus         1 p~~~~~~~~~~--~~~e~~---~~~~~~~~~~~~~~~iTl~p~~rf~~DAaIiffsDIL~ip~AlG~~v~f~~g~GP~~~   75 (306)
T cd00465           1 PVQCEGQTGIM--EASETM---AISEEPGETSKAEWGITLVEPEEIPLDVIPVHEDDVLKVAQALGEWAFRYYSQAPSVP   75 (306)
T ss_pred             CCCHHHHCCCC--CHHHHH---CCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCEECHHHCCCCEEEEECCCCCCC
T ss_conf             92011001555--254543---2677767898654238731510168885665388602187681995479507589899


Q ss_pred             CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             33333554205670123443237877787642102453201111479999999961246776524677530137222899
Q gi|254780812|r  100 PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNW  179 (346)
Q Consensus       100 p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~  179 (346)
T Consensus        76 ~~~~~----------~~~~~l~~v~~~i~~~~~~--~~vpLIGFaGaPwTla~Ymieg~~sk~------~~~~~pe~~~~  137 (306)
T cd00465          76 EIDEE----------EDPFREAPALEHITAVRSL--EEFPTAGAAGGPFTFTHHSMSMGDALM------ALYERPEAMHE  137 (306)
T ss_pred             CCCCC----------HHHHHHHHHHHHHHHHHHC--CCCCEEEECCCHHHHHHHHHCCCHHHH------HHHHCHHHHHH
T ss_conf             87740----------5666447899999998635--786237645865999999983810899------98879999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH----HCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHH
Q ss_conf             99999999999977777549816784383110----06835677761272268999986308862360243110000134
Q gi|254780812|r  180 LLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAG----CLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYMLKN  255 (346)
Q Consensus       180 ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag----~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~l~~  255 (346)
T Consensus       138 LL~~lt~~~i~yl~~Qi~aGAdavqiFDSWag~~~~~L~p~~~~~f~lp~~~~I~~~~~~--~~vPiI~F~~G~~~~~l~  215 (306)
T cd00465         138 LIEYLTEFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAA--GEVPIVHHSCYDAADLLE  215 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEECCCHHHHHH
T ss_conf             999999999999999998488999974343342311039999999999999999997457--999889983286677899


Q ss_pred             HHCCCCCCEEECCCCC-CHHHHHH-HCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC--H
Q ss_conf             2014787223046779-9899997-0798469688884677099889999999999973259928960897633668--8
Q gi|254780812|r  256 YRRLTDSNAIGLDWSV-PLSFALE-LQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVD--P  331 (346)
Q Consensus       256 ~~~~~g~d~isiD~~~-dl~~a~~-~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp--~  331 (346)
T Consensus       216 ~~~~~g~d~i~lD~~~~d~~~a~~~~~~~~~lQGNLDP~~L~~~~e~i~~~v~~il~~~g-~~~IfNLGHGi~P~~d~~p  294 (306)
T cd00465         216 EMIQLGVDVISFDMTVNEPKEAIEKVGEKKTLVGGVDPGYLPATDEECIAKVEELVERLG-PHYIINPDCGLGPDSDYKP  294 (306)
T ss_pred             HHHHCCCCEEEEECCCCCHHHHHHHHCCCEEEECCCCCHHHCCCHHHHHHHHHHHHHHHC-CCCEEECCCCCCCCCCCCH
T ss_conf             998619867997367778999999818991587089846765998999999999999848-9877978998899999981


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999973
Q gi|254780812|r  332 KNVLDLVKTVRS  343 (346)
Q Consensus       332 eNv~~~v~~vr~  343 (346)
T Consensus       295 e~v~~~v~~V~e  306 (306)
T cd00465         295 EHLRAVVQLVDE  306 (306)
T ss_pred             HHHHHHHHHHCC
T ss_conf             799999998549