HHsearch alignment for GI: 254780812 and conserved domain: cd03307

>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=100.00  E-value=0  Score=649.93  Aligned_cols=308  Identities=22%  Similarity=0.315  Sum_probs=272.6

Q ss_pred             HHHHCCCCCCCCCCH---------HHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEE
Q ss_conf             999669989999761---------46231234579999976155389984279999998721287629872652133200
Q gi|254780812|r    9 LEVLQGNVINPPPIW---------LMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILV   79 (346)
Q Consensus         9 l~al~g~~~~r~PVW---------~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~   79 (346)
T Consensus         1 l~Al~ge~~dR~PVw~~~~~g~~~~mrqaGr~lpEy~-------------~~~e~~ae~~l~p~~~~g~Daai~fsDilv   67 (326)
T cd03307           1 LAALNGQPVDRVPVICPTQTGTVELMEATGAYWPEAH-------------SDAEKMADLAAAGHEVAGFEAVRVPFCMTV   67 (326)
T ss_pred             CCCCCCCCCCCCCEECCCCCCHHHHHHHHCCCCHHHH-------------CCHHHHHHHHHHHHHHHCCCEEECCCCHHH
T ss_conf             9300489899999633653328999999389816675-------------699999999970898709986774633212


Q ss_pred             CCHHHCCCEEEECCC-CCCC-C-CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             104324433731688-7522-2-333335542056701234432378777876421024532011114799999999612
Q gi|254780812|r   80 IADALGRNVRFVENE-GPRM-D-PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMIS  156 (346)
Q Consensus        80 ~~ealG~~v~f~~~~-GP~~-~-p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmie  156 (346)
T Consensus        68 ~~ealG~~v~f~~~~~~P~v~~~~i~~~~d~~~l~~~~~~~~~l~~v~eai~~lr~~l~~~vpliGf~g~P~Tla~~l~g  147 (326)
T cd03307          68 EAEALGCEVDWGTKDIQPSVTSHPFKKLEDVEKLPDDFLERGRIPTVLEAIKILKEKYGEEVPVIGGMTGPASLASHLAG  147 (326)
T ss_pred             HHHHCCCEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHC
T ss_conf             08980982340478889856788889999996177654000125899999999999718997669870768999999757


Q ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH--HCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf             4677652467753013722289999999999999977777549816784383110--06835677761272268999986
Q gi|254780812|r  157 GGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAG--CLGEHEFENYAARSVGRIISAVR  234 (346)
Q Consensus       157 G~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag--~Ls~~~f~~f~~p~~kkI~~~ik  234 (346)
T Consensus       148 ---~~~~~---~~~~~~p~~~~~lL~~itd~~i~~~~~qi~aGad~i~ifDs~a~~~lls~~~f~ef~~p~~~~i~~~i~  221 (326)
T cd03307         148 ---VENFL---KWLIKKPEKVREFLEFLTEACIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELH  221 (326)
T ss_pred             ---HHHHH---HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             ---59999---999879999999999999999999999998488878863565653458999999999999999999658


Q ss_pred             HHCCCCE-EECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCCEEEECCCCHHH-H-CCCHHHHHHHHHHHHH
Q ss_conf             3088623-6024311000013420147872230467799899997-079846968888467-7-0998899999999999
Q gi|254780812|r  235 RKYPNAK-FISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQGNLDPMR-L-VVGNQVMIDGVNAILD  310 (346)
Q Consensus       235 ~~~~~vp-iI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~~~lqGNldP~~-L-~~~~e~i~~~~~~~l~  310 (346)
T Consensus       222 ~----~~~i~h~~G~~~~~~~~~~~-~g~d~is~D~~~~l~~a~~~~~~~~~iqGNldP~~ll~~g~~e~i~~~~~~~l~  296 (326)
T cd03307         222 G----CPTILHICGNTTPILEYIAQ-CGFDGISVDEKVDVKTAKEIVGGRAALIGNVSPSQTLLNGTPEDVKAEARKCLE  296 (326)
T ss_pred             C----CCEEEEECCCHHHHHHHHHH-CCCCEEECCCCCCHHHHHHHCCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHH
T ss_conf             9----98278845875889999997-199899668989999999980898169942884898767999999999999997


Q ss_pred             HHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             732599289608976336688999999999973
Q gi|254780812|r  311 VLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRS  343 (346)
Q Consensus       311 ~~~~~~~I~nLGhGi~p~tp~eNv~~~v~~vr~  343 (346)
T Consensus       297 ~g---~~I~nlGhgi~p~tp~env~a~v~avkE  326 (326)
T cd03307         297 DG---VDILAPGCGIAPRTPLANLKAMVEARKE  326 (326)
T ss_pred             CC---CCEEECCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             38---9955898966999899999999998629