HHsearch alignment for GI: 254780812 and conserved domain: pfam01717

>pfam01717 Meth_synt_2 Cobalamin-independent synthase, Catalytic domain. This is a family of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, EC:2.1.1.14 from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length. This domain contains the catalytic residues of the enzyme.
Probab=98.47  E-value=5.4e-06  Score=62.98  Aligned_cols=187  Identities=14%  Similarity=0.099  Sum_probs=119.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCH-HH---
Q ss_conf             32011114799999999612467765246775301372228999999999999997777754981678438311-00---
Q gi|254780812|r  137 HITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHA-GC---  212 (346)
Q Consensus       137 ~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~a-g~---  212 (346)
T Consensus       120 ~~~~K~~i~gP~t~~~~~~------~~------~Y~~---~~~~~~dla~a~~~ei~~l~~aG~~~iQiDeP~l~~~~~~  184 (324)
T pfam01717       120 DKPVKGMLTGPVTILNWSF------VR------DDQD---REAQAMQIALALRDEVKDLEAAGILVIQIDEPALREGLPL  184 (324)
T ss_pred             CCCHHHHCCCCHHHHCCCC------CC------CCCC---HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCC
T ss_conf             7430120478635440456------65------7999---9999999999999999999987998899757788636644


Q ss_pred             --CCHHHHHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCCCCC-CHHHHHCCCCCCEEECCCCC----CHHHHHHHC-CCE
Q ss_conf             --683567776127226899998630886236-024311000-01342014787223046779----989999707-984
Q gi|254780812|r  213 --LGEHEFENYAARSVGRIISAVRRKYPNAKF-ISFAKGAGY-MLKNYRRLTDSNAIGLDWSV----PLSFALELQ-KEG  283 (346)
Q Consensus       213 --Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g~~~-~l~~~~~~~g~d~isiD~~~----dl~~a~~~~-~~~  283 (346)
T Consensus       185 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~H~C~gny~~i~~~l~~-~~vd~~~lE~~~~~~~~~~~l~~~~~~k~  260 (324)
T pfam01717       185 KKLDWAAYLDWA---VAAFRLDTIVAALDTQVHTHVCYSDFNDILDAIDA-LDVDVLTIEFARSDMENLEALEEWGYGKG  260 (324)
T ss_pred             CCCCHHHHHHHH---HHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHH-CCCCEEEEECCCCCCHHHHHHHHCCCCCE
T ss_conf             334989999999---99999871678999889999668884999999974-89888981116898114588884799984


Q ss_pred             EEECCCCHHH-HCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCH---HHHHHHHHHHH
Q ss_conf             6968888467-70998899999999999732599289608976336688---99999999997
Q gi|254780812|r  284 PVQGNLDPMR-LVVGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDP---KNVLDLVKTVR  342 (346)
Q Consensus       284 ~lqGNldP~~-L~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~---eNv~~~v~~vr  342 (346)
T Consensus       261 v~lGvVd~k~~~lE~~e~v~~rI~~aa~~v~~erL~~spdCGf~~l~~e~a~~KL~~~ve~a~  323 (324)
T pfam01717       261 VGFGVVDIHSPRVPSVEEIKALIKKALDIVPADRLWVNPDCGLKTRPWEEARAALRNMVDAAK  323 (324)
T ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             998888178999899999999999999848988899878889884988999999999999856