HHsearch alignment for GI: 254780812 and conserved domain: pfam08267
>pfam08267 Meth_synt_1 Cobalamin-independent synthase, N-terminal domain. The N-terminal domain and C-terminal domains of cobalamin-independent synthases together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilize a loop from the C-terminal domain.
Probab=93.55 E-value=0.76 Score=26.82 Aligned_cols=163 Identities=17% Similarity=0.127 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 23787778764210245320111147999999996124677652467753013722289999999999999977777549
Q gi|254780812|r 120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAG 199 (346)
Q Consensus 120 l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aG 199 (346)
T Consensus 137 ~~e~~eA~~-lG~---~~kPVL---vGPvTfL~L------sk~~~------~~~---~~~ll~~ll~~Y~~ll~~L~~~G 194 (310)
T pfam08267 137 LEEYLEAKA-LGI---KAKPVL---LGPLTFLWL------SKNKG------GKD---RLELLEALLPVYKELLKELAAAG 194 (310)
T ss_pred HHHHHHHHH-CCC---CCCCEE---ECCHHHHHH------HCCCC------CCC---HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999997-499---888668---551899987------50257------899---99999999999999999998779
Q ss_pred CCEEEECCCCH-HHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCCCCCCHHHHHCCCCCCEEECCCCCC---HH
Q ss_conf 81678438311-00683567776127226899998630886236-024311000013420147872230467799---89
Q gi|254780812|r 200 VDVIQIFDTHA-GCLGEHEFENYAARSVGRIISAVRRKYPNAKF-ISFAKGAGYMLKNYRRLTDSNAIGLDWSVP---LS 274 (346)
Q Consensus 200 ad~iqIFDs~a-g~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g~~~~l~~~~~~~g~d~isiD~~~d---l~ 274 (346)
T Consensus 195 ~~wVQiDEP~Lv~dl~~~~~~~~~~~Y-~~L~~---~~~~kill~TYFg-~~~~~~~~l~~-lpv~gl~lDlv~~~~~l~ 268 (310)
T pfam08267 195 AEWVQIDEPALVLDLPKEWLEAFKEAY-AELAS---KGGLKLLLATYFG-SVADALELLAS-LPVDGLGLDLVRGPENLA 268 (310)
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHH-HHHHH---CCCCCEEEECCCC-CHHHHHHHHHC-CCCCEEEEECCCCHHHHH
T ss_conf 987983277021579999999999999-99971---7898689982556-78889999976-997479986057865799
Q ss_pred HHHH-HCC-CEEEECCCCHHHH-CCCHHHHHHHHHHHHH
Q ss_conf 9997-079-8469688884677-0998899999999999
Q gi|254780812|r 275 FALE-LQK-EGPVQGNLDPMRL-VVGNQVMIDGVNAILD 310 (346)
Q Consensus 275 ~a~~-~~~-~~~lqGNldP~~L-~~~~e~i~~~~~~~l~ 310 (346)
T Consensus 269 ~v~~~~p~~k~L~aGvVdGRNIWr~dl~~~l~~l~~l~~ 307 (310)
T pfam08267 269 ALKKGFPADKVLSAGVIDGRNIWRADLEKALALLETLAE 307 (310)
T ss_pred HHHHHCCCCCEEEEEEECCEECCHHCHHHHHHHHHHHHH
T ss_conf 999618999789999865710443279999999999999