HHsearch alignment of GI: 254780812 and MMDB domain: 1u1j_A_1-10_129-393
>1u1j_A (A:1-10,A:129-393) 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana}
Probab=99.95 E-value=2e-29 Score=227.13 Aligned_cols=210 Identities=9% Similarity=-0.017 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44323787778764210245320111147999999996124677652467753013722289999999999999977777
Q gi|254780812|r 117 LNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQI 196 (346)
Q Consensus 117 ~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi 196 (346)
..+.++++++++.+|+. .+|++|++.||||+|+++....+.+. |.+ .++|++.+++.+.+|+++|+
T Consensus 13 ~~~~~~~le~~~~lk~~---~~pik~~i~GP~Tla~~l~~~~~~~~--------y~~---~~~ll~~l~~~~~e~~~~l~ 78 (275)
T 1u1j_A 13 SYASHKAVNEYKEAKAL---GVDTVPVLVGPVSYLLLSKAAKGVDK--------SFE---LLSLLPKILPIYKEVITELK 78 (275)
T ss_dssp CCCCCHHHHHHHHHHHT---TCCCEEEEECHHHHHHTCEECTTCCT--------TCC---GGGGHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHC---CCCCCCCCCCHHHHHHHHHHCCCCCC--------CCC---HHHHHHHHHHHHHHHHHHHH
T ss_conf 66741799999999853---76666145888999997611257655--------768---99999999999999999998
Q ss_pred HCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCE-EECCCCCCC--CCHHHHHCCCCCCEEECCCCCCH
Q ss_conf 549816784383110068356777612722689999863088623-602431100--00134201478722304677998
Q gi|254780812|r 197 HAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAK-FISFAKGAG--YMLKNYRRLTDSNAIGLDWSVPL 273 (346)
Q Consensus 197 ~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vp-iI~f~~g~~--~~l~~~~~~~g~d~isiD~~~dl 273 (346)
++||++|||+||+++.++++.|++|+.++++++.+.+++ ++ .+|.|.|.. .....+...+++|++++|+..+.
T Consensus 79 ~aGa~~IqidEP~~~~~~~~~~~e~~~~~~~~l~~~~~~----~~~~vHic~~~~~~~~~~~l~~~~~~d~l~~d~~~~~ 154 (275)
T 1u1j_A 79 AAGATWIQLDEPVLVXDLEGQKLQAFTGAYAELESTLSG----LNVLVETYFADIPAEAYKTLTSLKGVTAFGFDLVRGT 154 (275)
T ss_dssp HTTCCEEEEECGGGGSCCCHHHHHHHHHHHHHSTTTTCS----SEEEEECCSSCCCHHHHHHHTTCTTCCEEEEESSSCT
T ss_pred HCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCC----CEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 668988997287201469999999999999999843699----8489985068876054999862789756999874586
Q ss_pred H----HHHHH-CCCEEEECCCCHHHH-CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 9----99970-798469688884677-09988999999999997325992896089763366889999999999730
Q gi|254780812|r 274 S----FALEL-QKEGPVQGNLDPMRL-VVGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRSE 344 (346)
Q Consensus 274 ~----~a~~~-~~~~~lqGNldP~~L-~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~eNv~~~v~~vr~~ 344 (346)
. .+++. .++.+++||+||..+ .+++|+|+++++++++.++..++|+|+|||+.+.||.+|+++++++++..
T Consensus 155 ~~~~~~~~~~~~~~~~~~G~id~~~~~~et~eeI~~~v~~~~~~~~~~~~iisp~Cgl~~~t~~~~~~a~~~a~~~~ 231 (275)
T 1u1j_A 155 KTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDKLVVSTSCSLLHTAVDLINETKLDDEIKS 231 (275)
T ss_dssp THHHHHHHCCCSSCEEEEEEECSSSCBCCCHHHHHHHHHHHHHHCCSSCEEEEESSCGGGSCSCGGGCCSSCHHHHT
T ss_pred CCCHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 54067886389988898866716878759999999999999973681107876888745687635444569988983