HHsearch alignment of GI: 254780812 and MMDB domain: 1ydo_A_
>1ydo_A (A:) HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 2.71A {Bacillus subtilis subsp}
Probab=92.09 E-value=0.38 Score=28.53 Aligned_cols=92 Identities=14% Similarity=0.101 Sum_probs=54.7
Q ss_pred HHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCC-HHHHHC--CCCCCE
Q ss_conf 99997777754981678438311006835677761272268999986308862360243110000-134201--478722
Q gi|254780812|r 188 SAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYM-LKNYRR--LTDSNA 264 (346)
Q Consensus 188 ~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI~f~~g~~~~-l~~~~~--~~g~d~ 264 (346)
..+.++.-.++|||.|.+-|| +|.+.|+... ++++.+++..|++++-.|+.+...+ ..+... ..|++.
T Consensus 159 l~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~v~--------~li~~l~~~~p~~~i~~H~Hn~~Gla~An~laAi~aGa~~ 229 (307)
T 1ydo_A 159 VIRLSEALFEFGISELSLGDT-IGAANPAQVE--------TVLEALLARFPANQIALHFHDTRGTALANXVTALQXGITV 229 (307)
T ss_dssp HHHHHHHHHHHTCSCEEEECS-SCCCCHHHHH--------HHHHHHHTTSCGGGEEEECBGGGSCHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHCCCEEEECCCC-CCCCCCHHHH--------HHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCEE
T ss_conf 899999998639807851465-5678807878--------8898776307863221430678640999998475407515
Q ss_pred EECCCCCCHHHHHHHCCCEEEECCCCHH
Q ss_conf 3046779989999707984696888846
Q gi|254780812|r 265 IGLDWSVPLSFALELQKEGPVQGNLDPM 292 (346)
Q Consensus 265 isiD~~~dl~~a~~~~~~~~lqGNldP~ 292 (346)
+...+. .+ -+-.+...+-||+.-.
T Consensus 230 id~s~~-Gl---G~~~g~~~l~~~~~~~ 253 (307)
T 1ydo_A 230 FDGSAG-GL---GGCPYAPGSSGNAATE 253 (307)
T ss_dssp EEEBGG-GC---CEETTEEEEECBCBHH
T ss_pred CCCCCC-CC---CCCCCCCCCCCCHHHH
T ss_conf 255665-88---7787876544663699