HHsearch results for GI: 254780812 and protein with PDBid: 1j93_A
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1
Probab=100.00 E-value=0 Score=738.80 Aligned_cols=343 Identities=29% Similarity=0.520 Sum_probs=321.2
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEEC
Q ss_conf 97605799999669989999761462312345799999761553899842799999987212876298726521332001
Q gi|254780812|r 1 MNERKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVI 80 (346)
Q Consensus 1 M~~~~~~~l~al~g~~~~r~PVW~MrQAGrylpey~~~r~~~~~f~~~~~~pela~evtl~p~~r~~~DaaIlFsDIl~~ 80 (346)
|+..+++||+||+||++||+||||||||||||||||++|+++.+|.|+|+|||+++|+|+||++|||+||||+||||+++
T Consensus 8 ~~~~~~~~l~al~ge~~dr~PVw~mrqaGr~lpey~~~~~~~~~f~~~~~dpe~~ae~~l~~~~~~~~D~~~~f~Di~~~ 87 (353)
T 1j93_A 8 INATQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQPWKVFRPDGVILFSDILTP 87 (353)
T ss_dssp ---CCCHHHHHHHTCCCSSCCBCCSCCCTTTTTHHHHHHHSSCSTTTTTTCHHHHHHHHHHHHHHHCCSEEECCCCTTTH
T ss_pred CCCCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCHHHH
T ss_conf 66664599999769989999989761566576899999985563887837999999999869998198889834675777
Q ss_pred CHHHCCCEEEECCCCCCCC-CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 0432443373168875222-333335542056701234432378777876421024532011114799999999612467
Q gi|254780812|r 81 ADALGRNVRFVENEGPRMD-PITTQEIYLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGF 159 (346)
Q Consensus 81 ~ealG~~v~f~~~~GP~~~-p~~~~~~~~~~~~~~~~~~~l~~v~eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~ 159 (346)
+||||++++|.++.||++. +.....+... .......++++++++|++++|+++++++|||||+|||||||+||++|++
T Consensus 88 ~ea~G~~v~~~~~~gp~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~ai~~lk~~l~~~vplig~~ggP~Tla~~l~~~~~ 166 (353)
T 1j93_A 88 LSGMNIPFDIIKGKGPVIFDPLRTAADVEK-VREFIPEKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGS 166 (353)
T ss_dssp HHHTTCCEEEETTTEEEESSCCCSHHHHHH-CCCCCHHHHCHHHHHHHHHHHHHHTTSSEEEEEEECHHHHHHHHHHSBC
T ss_pred HHHHCCEEEECCCCCCCCCCCCCCHHHHCC-CCCCCHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCC
T ss_conf 997187786337888775775455655301-2467846515459999999998646787478760858999999974765
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 76524677530137222899999999999999777775498167843831100683567776127226899998630886
Q gi|254780812|r 160 IKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPN 239 (346)
Q Consensus 160 sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~ 239 (346)
++++.+.+++|+++|+.++++|+++|+++++|+++|+++|||+||||||||++||+++|++|++||+++|++++++++++
T Consensus 167 ~~~~~~~~~~~~~~p~~~~~ll~~~t~~~~~~~~~qi~aGad~i~i~ds~a~~ls~~~~~~f~~p~~k~i~~~~~~~~~~ 246 (353)
T 1j93_A 167 SKNFTKIKRLAFAEPKVLHALLQKFATSMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPN 246 (353)
T ss_dssp CSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECGGGGGSCHHHHHHHTHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 56679999998748377899998889999999999985179889982013434489999998788999999998863799
Q ss_pred CEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHH-HCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 236024311000013420147872230467799899997-0798469688884677099889999999999973259928
Q gi|254780812|r 240 AKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALE-LQKEGPVQGNLDPMRLVVGNQVMIDGVNAILDVLGSGPFI 318 (346)
Q Consensus 240 vpiI~f~~g~~~~l~~~~~~~g~d~isiD~~~dl~~a~~-~~~~~~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~I 318 (346)
+|++|||++++..++.+.+ +|++++|+||.+|++++++ ++++++||||+||..|++++|+++++++++|+.++++|||
T Consensus 247 ~~i~~~~~~~~~~~~~~~~-~g~~~ls~d~~~dl~~a~~~~~~~~~lqGNvdP~~L~g~~e~i~~~~~~~l~~~~~~~~I 325 (353)
T 1j93_A 247 LPLILYASGSGGLLERLPL-TGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFGSKEFITNRINDTVKKAGKGKHI 325 (353)
T ss_dssp CCEEEECSSCTTTGGGGGG-GCCSEEECCTTSCHHHHHHHTCSSSEEECCBCGGGGGSCHHHHHHHHHHHHHHHCSSSEE
T ss_pred CCEEEECCCCHHHHHHHHC-CCCCEECCCCCCCHHHHHHHHCCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCCE
T ss_conf 9878404760777766533-575255363112179999981998079947886787699999999999999963999908
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 960897633668899999999997306
Q gi|254780812|r 319 FNLGHGITPQVDPKNVLDLVKTVRSEK 345 (346)
Q Consensus 319 ~nLGhGi~p~tp~eNv~~~v~~vr~~~ 345 (346)
||+||||+|+||+|||++||++||+||
T Consensus 326 l~~Gcgi~p~tp~env~a~v~avr~~k 352 (353)
T 1j93_A 326 LNLGHGIKVGTPEENFAHFFEIAKGLR 352 (353)
T ss_dssp BCBSSCCCTTCCHHHHHHHHHHHHTCC
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 969997799999999999999998637