HHsearch results for GI: 254780812 and protein with PDBid: 1u1j_A

>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A*
Probab=98.23  E-value=2.4e-05  Score=56.92  Aligned_cols=189  Identities=15%  Similarity=0.166  Sum_probs=120.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC-HHHC--
Q ss_conf             3201111479999999961246776524677530137222899999999999999777775498167843831-1006--
Q gi|254780812|r  137 HITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTH-AGCL--  213 (346)
Q Consensus       137 ~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~-ag~L--  213 (346)
                      ++|+=|-.-||.|++....    .++        |   ..-.++..-+..++.+-++...++|+.+|||=|+. +..+  
T Consensus       551 ~kpvK~~ltgP~ti~~~s~----~r~--------y---~~~~e~~~diA~alr~Ev~~L~~aG~~~IQiDEPal~~~l~~  615 (765)
T 1u1j_A          551 SRPMKGMLTGPVTILNWSF----VRN--------D---QPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPL  615 (765)
T ss_dssp             SSCBEEEEECHHHHHHTSE----ECT--------T---SCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTSSTTCCS
T ss_pred             CCCCCCCCCCHHHHHHHHC----CCC--------C---CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHCCCCC
T ss_conf             7777621687899985413----635--------6---899999999999999999999976999899647334213655


Q ss_pred             CH---HHHHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCCC-CCCHHHHHCCCCCCEEECCCCC-CH---HHHHH-HC-CC
Q ss_conf             83---567776127226899998630886236-0243110-0001342014787223046779-98---99997-07-98
Q gi|254780812|r  214 GE---HEFENYAARSVGRIISAVRRKYPNAKF-ISFAKGA-GYMLKNYRRLTDSNAIGLDWSV-PL---SFALE-LQ-KE  282 (346)
Q Consensus       214 s~---~~f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g~-~~~l~~~~~~~g~d~isiD~~~-dl---~~a~~-~~-~~  282 (346)
                      .+   +.|.+++....+..++.+++   ++.+ +|.|.|. ...++.+.+ .++|+++++..- +.   +..++ .. ++
T Consensus       616 ~~~~~~~~l~~~v~~~~~a~~~~~~---~~~i~~H~Cyg~f~~i~~~i~~-l~aD~i~lE~~~~~~~~l~~~~~~~~~~k  691 (765)
T 1u1j_A          616 RKSEHAFYLDWAVHSFRITNCGVQD---STQIHTHMCYSHFNDIIHSIID-MDADVITIENSRSDEKLLSVFREGVKYGA  691 (765)
T ss_dssp             SGGGHHHHHHHHHHHHHHHHTTSCS---SSEEEEECSCSCCTTTHHHHHT-TCCSEEECCBSSSCTTGGGGGTTTTCCCS
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCC---CCEEEEEECCCCHHHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             5326999999999999998559998---8889998338772999999963-99998998548998367798886478999


Q ss_pred             EEEECCCCHHHH-CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCH---HHHHHHHHHHHHC
Q ss_conf             469688884677-0998899999999999732599289608976336688---9999999999730
Q gi|254780812|r  283 GPVQGNLDPMRL-VVGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDP---KNVLDLVKTVRSE  344 (346)
Q Consensus       283 ~~lqGNldP~~L-~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~---eNv~~~v~~vr~~  344 (346)
                      .+.-|=+|...- ..++|+|.+..++.++.........|..||.-+-+..   ++++.||+++|.-
T Consensus       692 ~i~~GVvd~~sp~ve~~eei~~ri~~a~~~i~~erl~v~PDCGl~t~~~~~~~~kL~~mv~aa~~v  757 (765)
T 1u1j_A          692 GIGPGVYDIHSPRIPSSEEIADRVNKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLI  757 (765)
T ss_dssp             EECCBSSCTTSSSCCTHHHHHHHHHHHHHSSCSTTBCBBCSSCSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             799978848999999999999999999983888889986888989699899999999999999999