HHsearch results for GI: 254780812 and protein with PDBid: 1u1j_A
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A*
Probab=98.23 E-value=2.4e-05 Score=56.92 Aligned_cols=189 Identities=15% Similarity=0.166 Sum_probs=120.8
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC-HHHC--
Q ss_conf 3201111479999999961246776524677530137222899999999999999777775498167843831-1006--
Q gi|254780812|r 137 HITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTH-AGCL-- 213 (346)
Q Consensus 137 ~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs~-ag~L-- 213 (346)
++|+=|-.-||.|++.... .++ | ..-.++..-+..++.+-++...++|+.+|||=|+. +..+
T Consensus 551 ~kpvK~~ltgP~ti~~~s~----~r~--------y---~~~~e~~~diA~alr~Ev~~L~~aG~~~IQiDEPal~~~l~~ 615 (765)
T 1u1j_A 551 SRPMKGMLTGPVTILNWSF----VRN--------D---QPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPL 615 (765)
T ss_dssp SSCBEEEEECHHHHHHTSE----ECT--------T---SCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTSSTTCCS
T ss_pred CCCCCCCCCCHHHHHHHHC----CCC--------C---CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHCCCCC
T ss_conf 7777621687899985413----635--------6---899999999999999999999976999899647334213655
Q ss_pred CH---HHHHHHHCCCHHHHHHHHHHHCCCCEE-ECCCCCC-CCCHHHHHCCCCCCEEECCCCC-CH---HHHHH-HC-CC
Q ss_conf 83---567776127226899998630886236-0243110-0001342014787223046779-98---99997-07-98
Q gi|254780812|r 214 GE---HEFENYAARSVGRIISAVRRKYPNAKF-ISFAKGA-GYMLKNYRRLTDSNAIGLDWSV-PL---SFALE-LQ-KE 282 (346)
Q Consensus 214 s~---~~f~~f~~p~~kkI~~~ik~~~~~vpi-I~f~~g~-~~~l~~~~~~~g~d~isiD~~~-dl---~~a~~-~~-~~ 282 (346)
.+ +.|.+++....+..++.+++ ++.+ +|.|.|. ...++.+.+ .++|+++++..- +. +..++ .. ++
T Consensus 616 ~~~~~~~~l~~~v~~~~~a~~~~~~---~~~i~~H~Cyg~f~~i~~~i~~-l~aD~i~lE~~~~~~~~l~~~~~~~~~~k 691 (765)
T 1u1j_A 616 RKSEHAFYLDWAVHSFRITNCGVQD---STQIHTHMCYSHFNDIIHSIID-MDADVITIENSRSDEKLLSVFREGVKYGA 691 (765)
T ss_dssp SGGGHHHHHHHHHHHHHHHHTTSCS---SSEEEEECSCSCCTTTHHHHHT-TCCSEEECCBSSSCTTGGGGGTTTTCCCS
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCC---CCEEEEEECCCCHHHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 5326999999999999998559998---8889998338772999999963-99998998548998367798886478999
Q ss_pred EEEECCCCHHHH-CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCH---HHHHHHHHHHHHC
Q ss_conf 469688884677-0998899999999999732599289608976336688---9999999999730
Q gi|254780812|r 283 GPVQGNLDPMRL-VVGNQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDP---KNVLDLVKTVRSE 344 (346)
Q Consensus 283 ~~lqGNldP~~L-~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p~tp~---eNv~~~v~~vr~~ 344 (346)
.+.-|=+|...- ..++|+|.+..++.++.........|..||.-+-+.. ++++.||+++|.-
T Consensus 692 ~i~~GVvd~~sp~ve~~eei~~ri~~a~~~i~~erl~v~PDCGl~t~~~~~~~~kL~~mv~aa~~v 757 (765)
T 1u1j_A 692 GIGPGVYDIHSPRIPSSEEIADRVNKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLI 757 (765)
T ss_dssp EECCBSSCTTSSSCCTHHHHHHHHHHHHHSSCSTTBCBBCSSCSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 799978848999999999999999999983888889986888989699899999999999999999