HHsearch results for GI: 254780812 and protein with PDBid: 1u1j_A

>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A*
Probab=97.83  E-value=0.0008  Score=46.24  Aligned_cols=143  Identities=14%  Similarity=0.173  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEECCC-CHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEE---CCCCCCCCCHH
Q ss_conf             999999999999977777549816784383-11006835677761272268999986308862360---24311000013
Q gi|254780812|r  179 WLLDFLSDVSAEYLIAQIHAGVDVIQIFDT-HAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFI---SFAKGAGYMLK  254 (346)
Q Consensus       179 ~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs-~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI---~f~~g~~~~l~  254 (346)
                      .+++.+..+-.+-++...++||..|||=|+ |+..++++.-..|     +++.+.+.+..+++.+.   ||+......+.
T Consensus       179 ~ll~~L~~aY~~~l~~L~~aG~~~VQlDEP~l~~d~~~~~~~~~-----~~ay~~L~~~~~~~~i~l~tyfg~~~~~~~~  253 (765)
T 1u1j_A          179 SLLPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAF-----TGAYAELESTLSGLNVLVETYFADIPAEAYK  253 (765)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTCCEEEEECGGGGSCCCHHHHHHH-----HHHHHHSTTTTCSSEEEEECCSSCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHH-----HHHHHHHHHCCCCCEEEEEEECCCCCCHHHH
T ss_conf             99999999999999999987998999648752678999999999-----9999999842799859998704887604699


Q ss_pred             HHHCCCCCCEEECCCCCC---HHHHHH-HCC-CEEEECCCCHHHH-CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf             420147872230467799---899997-079-8469688884677-09988999999999997325992896089763
Q gi|254780812|r  255 NYRRLTDSNAIGLDWSVP---LSFALE-LQK-EGPVQGNLDPMRL-VVGNQVMIDGVNAILDVLGSGPFIFNLGHGIT  326 (346)
Q Consensus       255 ~~~~~~g~d~isiD~~~d---l~~a~~-~~~-~~~lqGNldP~~L-~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~  326 (346)
                      .+....++|++++|....   +..... ... +...-|=+|.... ..+.+++.+..+++.+..+....++|..||++
T Consensus       254 ~L~~~~~vd~l~lD~~~~~~~~~~~~~~~p~~k~L~lGVVdgrn~w~ed~e~v~~rI~~a~~~v~~erl~lspsCsLl  331 (765)
T 1u1j_A          254 TLTSLKGVTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDKLVVSTSCSLL  331 (765)
T ss_dssp             HHTTCTTCCEEEEESSSCTTHHHHHHHCCCSSCEEEEEEECSSSCBCCCHHHHHHHHHHHHHHCCSSCEEEEESSCGG
T ss_pred             HHHHCCCCCEEEEEEECCCCCCHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCC
T ss_conf             885278974699996158654167886389888899988825878749999999999999973582217887888634