HHsearch results for GI: 254780812 and protein with PDBid: 1u1j_A
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A*
Probab=97.83 E-value=0.0008 Score=46.24 Aligned_cols=143 Identities=14% Similarity=0.173 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEECCC-CHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEE---CCCCCCCCCHH
Q ss_conf 999999999999977777549816784383-11006835677761272268999986308862360---24311000013
Q gi|254780812|r 179 WLLDFLSDVSAEYLIAQIHAGVDVIQIFDT-HAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFI---SFAKGAGYMLK 254 (346)
Q Consensus 179 ~ll~~lt~~~~~yl~~Qi~aGad~iqIFDs-~ag~Ls~~~f~~f~~p~~kkI~~~ik~~~~~vpiI---~f~~g~~~~l~ 254 (346)
.+++.+..+-.+-++...++||..|||=|+ |+..++++.-..| +++.+.+.+..+++.+. ||+......+.
T Consensus 179 ~ll~~L~~aY~~~l~~L~~aG~~~VQlDEP~l~~d~~~~~~~~~-----~~ay~~L~~~~~~~~i~l~tyfg~~~~~~~~ 253 (765)
T 1u1j_A 179 SLLPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAF-----TGAYAELESTLSGLNVLVETYFADIPAEAYK 253 (765)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTCCEEEEECGGGGSCCCHHHHHHH-----HHHHHHSTTTTCSSEEEEECCSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHH-----HHHHHHHHHCCCCCEEEEEEECCCCCCHHHH
T ss_conf 99999999999999999987998999648752678999999999-----9999999842799859998704887604699
Q ss_pred HHHCCCCCCEEECCCCCC---HHHHHH-HCC-CEEEECCCCHHHH-CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 420147872230467799---899997-079-8469688884677-09988999999999997325992896089763
Q gi|254780812|r 255 NYRRLTDSNAIGLDWSVP---LSFALE-LQK-EGPVQGNLDPMRL-VVGNQVMIDGVNAILDVLGSGPFIFNLGHGIT 326 (346)
Q Consensus 255 ~~~~~~g~d~isiD~~~d---l~~a~~-~~~-~~~lqGNldP~~L-~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~ 326 (346)
.+....++|++++|.... +..... ... +...-|=+|.... ..+.+++.+..+++.+..+....++|..||++
T Consensus 254 ~L~~~~~vd~l~lD~~~~~~~~~~~~~~~p~~k~L~lGVVdgrn~w~ed~e~v~~rI~~a~~~v~~erl~lspsCsLl 331 (765)
T 1u1j_A 254 TLTSLKGVTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDKLVVSTSCSLL 331 (765)
T ss_dssp HHTTCTTCCEEEEESSSCTTHHHHHHHCCCSSCEEEEEEECSSSCBCCCHHHHHHHHHHHHHHCCSSCEEEEESSCGG
T ss_pred HHHHCCCCCEEEEEEECCCCCCHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCC
T ss_conf 885278974699996158654167886389888899988825878749999999999999973582217887888634