HHsearch results for GI: 254780812 and protein with PDBid: 1ypx_A
>1ypx_A Putative vitamin-B12 independent methionine synthase family protein; alpha-beta protein, whose fold resembles A TIM-barrel protein; 2.60A {Listeria monocytogenes egd-e}
Probab=98.19 E-value=6.6e-06 Score=60.87 Aligned_cols=207 Identities=9% Similarity=0.045 Sum_probs=120.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 77876421024532011114799999999612467765246775301372228999999999999997777754981678
Q gi|254780812|r 125 QSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQ 204 (346)
Q Consensus 125 eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iq 204 (346)
+..+.+++......++=..++||.|++...- ...+ --|.+ ...+++.+.++..+-++...++||+.||
T Consensus 118 ~e~~~~~~~~~~~~~~k~~l~gP~~~~~~~~---~~~~------~~y~~---~~~l~~~la~a~~~ei~~L~~aG~~~IQ 185 (375)
T 1ypx_A 118 EDFIFLKEAVGDNHVAKQTIPSPAMLHYRGD---IEYQ------PYLDD---AEKFANDLATAYQKAIQAFYDAGCRYLQ 185 (375)
T ss_dssp HHHHHHHHHHCSSSEECEEEECTHHHHHHEE---ECSH------HHHHC---HHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHCCCCCCCEEECCCHHHHHHCC---CCCC------CCCCH---HHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 8899999851127887448356426665214---4557------54213---9999999999999999999967998898
Q ss_pred ECCCCHHH-CCHHH----------HHHHHCCCHHHHHHHHHHHCC-CCEE-ECCCCCCCC-----------CHHHHHCCC
Q ss_conf 43831100-68356----------777612722689999863088-6236-024311000-----------013420147
Q gi|254780812|r 205 IFDTHAGC-LGEHE----------FENYAARSVGRIISAVRRKYP-NAKF-ISFAKGAGY-----------MLKNYRRLT 260 (346)
Q Consensus 205 IFDs~ag~-Ls~~~----------f~~f~~p~~kkI~~~ik~~~~-~vpi-I~f~~g~~~-----------~l~~~~~~~ 260 (346)
|=||.-.. ++.+. ++.+ .....++++.+-+..+ ++.+ +|+|.|... .+.......
T Consensus 186 iDEP~L~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~n~~~~~~~~~~~i~~h~c~g~~~~~~~~~~~~~~~~~~~~~~l 264 (375)
T 1ypx_A 186 LDDTSWSYLCSDEQREVVRQRGFDPETL-QETYKNLINEAIKHKPADMVITMHICRGNFRSTWIAEGGYGPVAETLFGKL 264 (375)
T ss_dssp EEECHHHHTTSCC--------CCSTTTH-HHHHHHHHHHHTTTCCTTCEEEEEECCC----------CCSGGGHHHHTTC
T ss_pred ECCCHHHHCCCHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 5271775225867787876443589999-999999999997179965289998525654666445665156788887507
Q ss_pred CCCEEECCCCCCHHHH----HHHC--CCEEEECCCCHHHH-CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCC------
Q ss_conf 8722304677998999----9707--98469688884677-099889999999999973259928960897633------
Q gi|254780812|r 261 DSNAIGLDWSVPLSFA----LELQ--KEGPVQGNLDPMRL-VVGNQVMIDGVNAILDVLGSGPFIFNLGHGITP------ 327 (346)
Q Consensus 261 g~d~isiD~~~dl~~a----~~~~--~~~~lqGNldP~~L-~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p------ 327 (346)
++|++++|...+-... +... ++...-|=+|...- ..+.|++.+.++++++..+....+.+..||+..
T Consensus 265 ~vd~l~le~~~~~~~~~~~l~~~~~~~k~l~~GVId~rn~~ve~~e~v~~ri~~a~~~v~~erl~v~pdCGl~~~~~~~~ 344 (375)
T 1ypx_A 265 NIDGFFLEYDNERSGDFAPLKYVTRPDLKIVLGLITSKTGELEDEAAIKARIEEASEIVPLSQLRLSPQCGFASTEEGNI 344 (375)
T ss_dssp CCSEEEEECCSCC---CCTTCCCCCTTCEEEEEEECSSSCC-CCSHHHHHHHHHHHHHSCGGGEEEEESSCCC-------
T ss_pred CCCEEEEECCCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHEEEECCCCCCCCCCCCC
T ss_conf 88879883266411258999853899988997578068898699999999999999838988899827889887776787
Q ss_pred ---CCCHHHHHHHHHHHHHC
Q ss_conf ---66889999999999730
Q gi|254780812|r 328 ---QVDPKNVLDLVKTVRSE 344 (346)
Q Consensus 328 ---~tp~eNv~~~v~~vr~~ 344 (346)
+.--++++.+++.+|..
T Consensus 345 l~~~~a~~KL~~~~~~A~~v 364 (375)
T 1ypx_A 345 LTEEEQWDKLRYVVRLANDI 364 (375)
T ss_dssp -CHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999