HHsearch results for GI: 254780812 and protein with PDBid: 1ypx_A

>1ypx_A Putative vitamin-B12 independent methionine synthase family protein; alpha-beta protein, whose fold resembles A TIM-barrel protein; 2.60A {Listeria monocytogenes egd-e}
Probab=98.19  E-value=6.6e-06  Score=60.87  Aligned_cols=207  Identities=9%  Similarity=0.045  Sum_probs=120.9

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             77876421024532011114799999999612467765246775301372228999999999999997777754981678
Q gi|254780812|r  125 QSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQ  204 (346)
Q Consensus       125 eAi~~~k~~l~~~~pLIGF~GgP~TlasYmieG~~sk~~~~~~~~~~~~p~~~~~ll~~lt~~~~~yl~~Qi~aGad~iq  204 (346)
                      +..+.+++......++=..++||.|++...-   ...+      --|.+   ...+++.+.++..+-++...++||+.||
T Consensus       118 ~e~~~~~~~~~~~~~~k~~l~gP~~~~~~~~---~~~~------~~y~~---~~~l~~~la~a~~~ei~~L~~aG~~~IQ  185 (375)
T 1ypx_A          118 EDFIFLKEAVGDNHVAKQTIPSPAMLHYRGD---IEYQ------PYLDD---AEKFANDLATAYQKAIQAFYDAGCRYLQ  185 (375)
T ss_dssp             HHHHHHHHHHCSSSEECEEEECTHHHHHHEE---ECSH------HHHHC---HHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHCCCCCCCEEECCCHHHHHHCC---CCCC------CCCCH---HHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             8899999851127887448356426665214---4557------54213---9999999999999999999967998898


Q ss_pred             ECCCCHHH-CCHHH----------HHHHHCCCHHHHHHHHHHHCC-CCEE-ECCCCCCCC-----------CHHHHHCCC
Q ss_conf             43831100-68356----------777612722689999863088-6236-024311000-----------013420147
Q gi|254780812|r  205 IFDTHAGC-LGEHE----------FENYAARSVGRIISAVRRKYP-NAKF-ISFAKGAGY-----------MLKNYRRLT  260 (346)
Q Consensus       205 IFDs~ag~-Ls~~~----------f~~f~~p~~kkI~~~ik~~~~-~vpi-I~f~~g~~~-----------~l~~~~~~~  260 (346)
                      |=||.-.. ++.+.          ++.+ .....++++.+-+..+ ++.+ +|+|.|...           .+.......
T Consensus       186 iDEP~L~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~n~~~~~~~~~~~i~~h~c~g~~~~~~~~~~~~~~~~~~~~~~l  264 (375)
T 1ypx_A          186 LDDTSWSYLCSDEQREVVRQRGFDPETL-QETYKNLINEAIKHKPADMVITMHICRGNFRSTWIAEGGYGPVAETLFGKL  264 (375)
T ss_dssp             EEECHHHHTTSCC--------CCSTTTH-HHHHHHHHHHHTTTCCTTCEEEEEECCC----------CCSGGGHHHHTTC
T ss_pred             ECCCHHHHCCCHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             5271775225867787876443589999-999999999997179965289998525654666445665156788887507


Q ss_pred             CCCEEECCCCCCHHHH----HHHC--CCEEEECCCCHHHH-CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCC------
Q ss_conf             8722304677998999----9707--98469688884677-099889999999999973259928960897633------
Q gi|254780812|r  261 DSNAIGLDWSVPLSFA----LELQ--KEGPVQGNLDPMRL-VVGNQVMIDGVNAILDVLGSGPFIFNLGHGITP------  327 (346)
Q Consensus       261 g~d~isiD~~~dl~~a----~~~~--~~~~lqGNldP~~L-~~~~e~i~~~~~~~l~~~~~~~~I~nLGhGi~p------  327 (346)
                      ++|++++|...+-...    +...  ++...-|=+|...- ..+.|++.+.++++++..+....+.+..||+..      
T Consensus       265 ~vd~l~le~~~~~~~~~~~l~~~~~~~k~l~~GVId~rn~~ve~~e~v~~ri~~a~~~v~~erl~v~pdCGl~~~~~~~~  344 (375)
T 1ypx_A          265 NIDGFFLEYDNERSGDFAPLKYVTRPDLKIVLGLITSKTGELEDEAAIKARIEEASEIVPLSQLRLSPQCGFASTEEGNI  344 (375)
T ss_dssp             CCSEEEEECCSCC---CCTTCCCCCTTCEEEEEEECSSSCC-CCSHHHHHHHHHHHHHSCGGGEEEEESSCCC-------
T ss_pred             CCCEEEEECCCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHEEEECCCCCCCCCCCCC
T ss_conf             88879883266411258999853899988997578068898699999999999999838988899827889887776787


Q ss_pred             ---CCCHHHHHHHHHHHHHC
Q ss_conf             ---66889999999999730
Q gi|254780812|r  328 ---QVDPKNVLDLVKTVRSE  344 (346)
Q Consensus       328 ---~tp~eNv~~~v~~vr~~  344 (346)
                         +.--++++.+++.+|..
T Consensus       345 l~~~~a~~KL~~~~~~A~~v  364 (375)
T 1ypx_A          345 LTEEEQWDKLRYVVRLANDI  364 (375)
T ss_dssp             -CHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999