RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780812|ref|YP_003065225.1| uroporphyrinogen decarboxylase
[Candidatus Liberibacter asiaticus str. psy62]
         (346 letters)



>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen
           decarboxylase coproporphyrinogen, X-RAY crystallography,
           lyase; HET: 1CP; 1.65A {Homo sapiens} (A:)
          Length = 367

 Score =  250 bits (639), Expect = 2e-67
 Identities = 124/346 (35%), Positives = 181/346 (52%), Gaps = 9/346 (2%)

Query: 5   KQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIR 64
               L    G   +  P+W MRQAGRYLPE+R+ R    +F   C +PE   ELTLQP+R
Sbjct: 16  NDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQ-DFFSTCRSPEACCELTLQPLR 74

Query: 65  RYNFDAAILFSDILVIADALGRNVRFVENEGPRM-DPITTQEIYLLNPNIDLFLNYLLPI 123
           R+  DAAI+FS ILV+  ALG  V  V  +GP   +P+  ++      + ++  + L  +
Sbjct: 75  RFPLDAAIIFSGILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYV 134

Query: 124 FQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDF 183
           FQ+I++ R++L   + LIGF GAPWT+ +YM+ GG      Q + + YQ  +A + LL  
Sbjct: 135 FQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRI 194

Query: 184 LSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAK-- 241
           L+D    YL+ Q+ AG   +Q+F++HAG LG   F  +A   +  +   V+ +   A   
Sbjct: 195 LTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLA 254

Query: 242 ---FISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALEL-QKEGPVQGNLDPMRLVVG 297
               I FAK   + L           +GLDW+V    A E   K   +QGNLDP  L   
Sbjct: 255 PVPMIIFAKDGHFAL-EELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYAS 313

Query: 298 NQVMIDGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRS 343
            + +   V  +LD  G   +I NLGHG+ P +DP++V   V  V  
Sbjct: 314 EEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHK 359


>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY
           diffraction, structural genomics, NPPSFA; 1.90A {Aquifex
           aeolicus} (A:)
          Length = 338

 Score =  246 bits (628), Expect = 3e-66
 Identities = 112/341 (32%), Positives = 187/341 (54%), Gaps = 12/341 (3%)

Query: 5   KQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIR 64
              +L  L+G  I   P+WLMRQAGRY+PEYR+IR + KNFL++C   +   E++L P++
Sbjct: 4   NDLLLRSLRGEPIGRFPVWLMRQAGRYMPEYRKIRNRVKNFLELCKNVDLATEISLLPLK 63

Query: 65  RYNFDAAILFSDILVIADALGRNVRFVENEGPRM-DPITTQEIYLLNPNIDLFLNYLLPI 123
               DA I+FSDILV  + LG  V FVE EGP++       ++   +P+          +
Sbjct: 64  ILGVDAIIIFSDILVPLEPLGVKVEFVEGEGPKLSWSGKVSDLKKYDPSQ------NAYV 117

Query: 124 FQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDF 183
           ++ I  ++ +  + + +IGF GAP+T+ SY+I GG  KD    ++F ++N + +  L+D 
Sbjct: 118 YEIIKRVK-EAQDEVPVIGFAGAPFTLLSYLIEGGASKDFKSTKLFMWENPKEYKRLMDI 176

Query: 184 LSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAKFI 243
           L++    YL  QI AG DV+QIFD+    L   ++  Y    V  +IS + + + +   I
Sbjct: 177 LTETVLAYLKEQIKAGADVVQIFDSWVNNLSLEDYGEYVYPYVNYLISEL-KDFSDTPVI 235

Query: 244 SFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALELQKEGPVQGNLDPMRLVVGNQVMID 303
            F +G+   + +      ++A+ +DWSV +    ++      QGNL+P  L    +V+ +
Sbjct: 236 YFFRGSSSFI-DLAVDYRADALSVDWSVDIPELFKIYD-KGFQGNLEPAVLYASEEVIEE 293

Query: 304 GVNAILDVLGSGP-FIFNLGHGITPQVDPKNVLDLVKTVRS 343
               +L  +     ++FNLGHG+ P ++ + V  LV  V+S
Sbjct: 294 KTLGLLRRIPVKTRYVFNLGHGLAPDMELEKVKYLVDLVKS 334


>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel,
           plastidial enzyme, crystallographic dimer, lyase; 2.30A
           {Nicotiana tabacum} (A:)
          Length = 353

 Score =  243 bits (620), Expect = 3e-65
 Identities = 98/345 (28%), Positives = 177/345 (51%), Gaps = 4/345 (1%)

Query: 1   MNERKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTL 60
           +N  +  +L+ ++G  +  PP+WLMRQAGRY+  Y+ + +K+  F D     +  VE++L
Sbjct: 8   INATQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISL 67

Query: 61  QPIRRYNFDAAILFSDILVIADALGRNVRFVENEGPRMD-PITTQEIYLLNPNIDLFLNY 119
           QP + +  D  ILFSDIL     +      ++ +GP +  P+ T    +      +    
Sbjct: 68  QPWKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAA-DVEKVREFIPEKS 126

Query: 120 LLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNW 179
           +  + ++++ILRK++ N   ++GF GAP+T+ASY++ GG  K+  + +  A+   +  + 
Sbjct: 127 VPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKVLHA 186

Query: 180 LLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPN 239
           LL   +   A+Y+  Q  +G   +QIFD+ A  L   +FE ++   + +I+ +V+  +PN
Sbjct: 187 LLQKFATSMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPN 246

Query: 240 AKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALEL-QKEGPVQGNLDPMRLVVGN 298
              I +A G+G +      LT  + + LDW+V ++           +QGN+DP  L    
Sbjct: 247 LPLILYASGSGGL-LERLPLTGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFGSK 305

Query: 299 QVMIDGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRS 343
           + + + +N  +   G G  I NLGHGI      +N     +  + 
Sbjct: 306 EFITNRINDTVKKAGKGKHILNLGHGIKVGTPEENFAHFFEIAKG 350


>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8
           barrel, eight parallel beta strands surrounded by eight
           alpha helices, lyase; 2.30A {Bacillus subtilis}
           (A:1-330)
          Length = 330

 Score =  241 bits (615), Expect = 1e-64
 Identities = 108/325 (33%), Positives = 167/325 (51%), Gaps = 12/325 (3%)

Query: 5   KQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIR 64
            +  L+  +G   +  P+W MRQAGR  PEYR++++K+    ++ + PE    +T  P+ 
Sbjct: 14  NETFLKAARGEKADHTPVWYMRQAGRSQPEYRKLKEKY-GLFEITHQPELCAYVTRLPVE 72

Query: 65  RYNFDAAILFSDILVIADALGRNVRFVENEGPRMD-PITTQEIY--LLNPNIDLFLNYLL 121
           +Y  DAAIL+ DI+    ++G +V      GP +D PI +      L   + +  + Y  
Sbjct: 73  QYGVDAAILYKDIMTPLPSIGVDVEIKNGIGPVIDQPIRSLADIEKLGQIDPEQDVPY-- 130

Query: 122 PIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLL 181
            + ++I +L  +  N + LIGF GAP+T+ASYM  GG  K++ + + F Y    A+N L+
Sbjct: 131 -VLETIKLLVNEQLN-VPLIGFSGAPFTLASYMTEGGPSKNYNKTKAFMYSMPDAWNLLM 188

Query: 182 DFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAK 241
             L+D+   Y+ AQI AG   IQIFD+  G L + ++  Y    + RI S +     N  
Sbjct: 189 SKLADMIIVYVKAQIKAGAKAIQIFDSWVGALNQADYRTYIKPVMNRIFSEL--AKENVP 246

Query: 242 FISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALELQKEGPVQGNLDPMRLVVGNQVM 301
            I F  GA ++          + +GLDW + +  A        VQGNLDP  L+   +V+
Sbjct: 247 LIMFGVGASHLAG-DWHDLPLDVVGLDWRLGIDEARSKGITKTVQGNLDPSILLAPWEVI 305

Query: 302 IDGVNAILDVLGSGP-FIFNLGHGI 325
                 ILD       FIFNLGHG+
Sbjct: 306 EQKTKEILDQGMESDGFIFNLGHGV 330


>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta
           barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A
           {Shigella flexneri} (A:)
          Length = 354

 Score =  234 bits (598), Expect = 1e-62
 Identities = 115/343 (33%), Positives = 176/343 (51%), Gaps = 3/343 (0%)

Query: 4   RKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTLQPI 63
           +  + L  L    ++  P+W+MRQAGRYLPEY+  R +  +F+ +C   E   E+TLQP+
Sbjct: 5   KNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPL 64

Query: 64  RRYNFDAAILFSDILVIADALGRNVRFVENEGPRMDPITTQEIYLLNPNIDLFLNYLLPI 123
           RRY  DAAILFSDIL + DA+G  + F   EGPR     T +  +    I    + L  +
Sbjct: 65  RRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDELGYV 124

Query: 124 FQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDF 183
             ++  +R +L   + LIGF G+PWT+A+YM+ GG  K     +   Y + +A + LLD 
Sbjct: 125 MNAVRTIRHELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDK 184

Query: 184 LSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAK-F 242
           L+     YL AQI AG   + IFDT  G L   +++ ++   + +I+  + R+    +  
Sbjct: 185 LAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVP 244

Query: 243 ISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALELQKEG-PVQGNLDPMRLVVGNQVM 301
           ++     G         T  +A+GLDW+  ++ A         +QGN+DP  L      +
Sbjct: 245 VTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARI 304

Query: 302 IDGVNAILDVLGSGP-FIFNLGHGITPQVDPKNVLDLVKTVRS 343
            + V  IL   G G   +FNLGHGI   V P++    V+ V  
Sbjct: 305 EEEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVEAVHR 347


>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
           methyltransferase; TIM barrel, methyltetrahydrofolate,
           zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A
           1xdj_A 1xr2_A* 1xpg_A* (A:392-766)
          Length = 375

 Score =  126 bits (316), Expect = 4e-30
 Identities = 36/363 (9%), Positives = 89/363 (24%), Gaps = 36/363 (9%)

Query: 1   MNERKQKILE-VLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNF------LDMCYTPE 53
              R+++  E           P++     G +       + + K         +     +
Sbjct: 22  SFRREKEYTERDRIQRERLNLPLFPTTTIGSFPQTPEVRKMRSKYRKGEISKEEYEAFIK 81

Query: 54  YTVELTLQPIRRYNFDAAILFSDILVIADALGRNVRFVENEGPRMDPITTQEIYLLNPNI 113
             ++  ++       D  +                            ++        P I
Sbjct: 82  EQIKKAIELQEEIGLDVLVHGEFERTDMVEFFAEKLNGIATTQNGWVLSYGSRCYRPPII 141

Query: 114 DLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQN 173
              +    P+     I   +      + G    P T+ S+      I +           
Sbjct: 142 YGTVTRPEPMTLKE-ITYAQSLTEKPVKGMLTGPVTIMSWSYYREDIPERE--------- 191

Query: 174 SRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHE---FENYAARSVGRII 230
                 +   ++    E +     AG+ ++QI +         +   +  Y   ++    
Sbjct: 192 ------IAYQIALAINEEVKDLEEAGIKIVQIDEPAFREKAPIKKSKWPEYFEWAINAFN 245

Query: 231 SAVRRKYPNAKFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALELQKEG------P 284
            A   +                +  Y    + + I ++ S      +   +         
Sbjct: 246 LAANARPETQIHAHMCYSDFNEIIEYIHQLEFDVISIEASRSKGEIISAFENFKGWIKQI 305

Query: 285 VQGNLDPMRLVVGN-QVMIDGVNAILDVLGSGPFIFNLGHGI---TPQVDPKNVLDLVKT 340
             G  D     V +   M + V  +L VL       N   G+          ++ ++V  
Sbjct: 306 GVGVWDIHSPAVPSINEMREIVERVLRVLPKELIWINPDCGLKTRNWDEVIPSLRNMVAL 365

Query: 341 VRS 343
            + 
Sbjct: 366 AKE 368


>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
           methyltransferase; methionine, synthase,
           methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis
           thaliana} (A:1-10,A:129-393)
          Length = 275

 Score =  124 bits (313), Expect = 1e-29
 Identities = 22/227 (9%), Positives = 51/227 (22%), Gaps = 21/227 (9%)

Query: 122 PIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLL 181
                    +      +  +     P +      +   +               +   LL
Sbjct: 18  KAVNEYKEAKAL---GVDTVPVLVGPVSYLLLSKAAKGVDK--------SFELLS---LL 63

Query: 182 DFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAK 241
             +  +  E +     AG   IQ+ +       E +       +   + S +        
Sbjct: 64  PKILPIYKEVITELKAAGATWIQLDEPVLVXDLEGQKLQAFTGAYAELESTLSGLNVLV- 122

Query: 242 FISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALELQKEGP-----VQGNLDPMRLVV 296
              FA       K    L    A G D          ++   P       G +D   +  
Sbjct: 123 ETYFADIPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWA 182

Query: 297 GNQVMI-DGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVR 342
            +       + A+  ++G    + +    +            +    
Sbjct: 183 NDFAASLSTLQALEGIVGKDKLVVSTSCSLLHTAVDLINETKLDDEI 229


>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
           methyltransferase; structural genomics, target 6426D,
           PSI; 1.90A {Streptococcus mutans} (A:1-66,A:130-390)
          Length = 327

 Score =  121 bits (305), Expect = 1e-28
 Identities = 27/228 (11%), Positives = 52/228 (22%), Gaps = 32/228 (14%)

Query: 122 PIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLL 181
            +       R+ + +          P T  +                   ++  A    +
Sbjct: 73  RLLDLYLEAREVVGD--KAKPVITGPITYVALS--------------TGVEDFTA---AV 113

Query: 182 DFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNAK 241
             L  +  +     + AG   IQ+ +         ++   A          V       K
Sbjct: 114 KSLLPLYKQVFTELVKAGASYIQVDEPIFVTDEGKDYLQAAKAVYAYFAKEVPDA----K 169

Query: 242 FISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALELQKE------GPVQGNLDPMRLV 295
           FI      G +          +A GLD+   L   LE  K           G +D   + 
Sbjct: 170 FIFQTYFEGLIDSQVLSQLPVDAFGLDFVYGLEENLEAIKTGAFKGKEIFAGVIDGRNIW 229

Query: 296 VGNQVMIDGVNAILDVLGSGP-FIFNLGHGITPQVDPKNVLDLVKTVR 342
             + V       +  +              +            +  V 
Sbjct: 230 SSDFVKT--SALLETIEEQSAALTIQPSCSLLHVPVTTKNETDLDPVL 275


>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
           methyltransferase; structural genomics, target 6426D,
           PSI; 1.90A {Streptococcus mutans} (A:415-755)
          Length = 341

 Score =  116 bits (291), Expect = 4e-27
 Identities = 44/332 (13%), Positives = 98/332 (29%), Gaps = 36/332 (10%)

Query: 32  LPEYRQIRKKFKNFLDMCYTPEYTVELTLQPIRRYNFDAAILFSDILVIADALGRNVRFV 91
            P+ R+IR+    +     +     +     I R+      L  D+LV  +    ++   
Sbjct: 11  FPQSREIRRTRLAWKRGDISDAEYKQFIQAEIERWIRIQEDLDLDVLVHGEFERVDMVEF 70

Query: 92  ENEGPRMDPITTQEI-------YLLNPNIDLFLNYLLPIFQSISILRKKLPNHITLIGFC 144
             +       T            +  P I   + +L PI    ++  + L +   + G  
Sbjct: 71  FGQKLAGFTTTKFGWVQSYGSRAVKPPIIYGDVQHLEPITVEETVYAQSLTDR-PVKGML 129

Query: 145 GAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWLLDFLSDVSAEYLIAQIHAGVDVIQ 204
             P T+ ++      I                   L + +     + +    +AG+ +IQ
Sbjct: 130 TGPITITNWSFERTDIPRDQ---------------LFNQIGLAIKDEIKLLENAGIAIIQ 174

Query: 205 IFDTHAGCLGE---HEFENYAARSVGRIISAVRRKYPNAKFISFAKGAGYM-LKNYRRLT 260
           + +            + + Y   +V     A        +  +    + +  + +  R  
Sbjct: 175 VDEAALREGLPLRKSKQKAYLDDAVHAFHIATSSVKDETQIHTHMCYSKFDEIIDAIRAL 234

Query: 261 DSNAIGLDWSVPLSFALELQKEGP-----VQGNLDPMRLVVGN-QVMIDGVNAILDVLGS 314
           D++ I ++ S      +E  +          G  D     V   + ++  +   L  L  
Sbjct: 235 DADVISIETSRSHGDIIESFETAVYPLGIGLGVYDIHSPRVPTKEEVVANIERPLRQLSP 294

Query: 315 GPFIFNLGHGI---TPQVDPKNVLDLVKTVRS 343
             F  N   G+           +  LV   + 
Sbjct: 295 TQFWVNPDCGLKTRQEPETIAALKVLVAATKE 326


>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine,
           structural genomics, joint center for structural
           genomics, JCSG; 1.90A {Thermotoga maritima}
           (A:1-102,A:135-381)
          Length = 349

 Score = 26.8 bits (59), Expect = 4.6
 Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 3/51 (5%)

Query: 178 NWLLDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGR 228
            W    L+D     +  QI  G D+  +FD    C            +  R
Sbjct: 93  GWKRPILTDSPEISMEVQIALGSDICMVFD---HCPVPDADYEEVKEATER 140


>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase,
           oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism,
           glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB:
           2bhl_A* 1qki_A* (A:1-178)
          Length = 178

 Score = 26.0 bits (57), Expect = 7.7
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 114 DLFLNYLLPIFQSISILRKKLPNHITLIGFCGAPWTVASY 153
           DL    + P    +      LP +  ++G+  +  TVA  
Sbjct: 16  DLAKKKIYPTIWWL-FRDGLLPENTFIVGYARSRLTVADI 54


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.324    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0480    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,747,089
Number of extensions: 130151
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 17
Length of query: 346
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 257
Effective length of database: 1,947,404
Effective search space: 500482828
Effective search space used: 500482828
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.6 bits)