BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780812|ref|YP_003065225.1| uroporphyrinogen decarboxylase [Candidatus Liberibacter asiaticus str. psy62] (346 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780812|ref|YP_003065225.1| uroporphyrinogen decarboxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 346 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/346 (100%), Positives = 346/346 (100%) Query: 1 MNERKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTL 60 MNERKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTL Sbjct: 1 MNERKQKILEVLQGNVINPPPIWLMRQAGRYLPEYRQIRKKFKNFLDMCYTPEYTVELTL 60 Query: 61 QPIRRYNFDAAILFSDILVIADALGRNVRFVENEGPRMDPITTQEIYLLNPNIDLFLNYL 120 QPIRRYNFDAAILFSDILVIADALGRNVRFVENEGPRMDPITTQEIYLLNPNIDLFLNYL Sbjct: 61 QPIRRYNFDAAILFSDILVIADALGRNVRFVENEGPRMDPITTQEIYLLNPNIDLFLNYL 120 Query: 121 LPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWL 180 LPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWL Sbjct: 121 LPIFQSISILRKKLPNHITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFNWL 180 Query: 181 LDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNA 240 LDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNA Sbjct: 181 LDFLSDVSAEYLIAQIHAGVDVIQIFDTHAGCLGEHEFENYAARSVGRIISAVRRKYPNA 240 Query: 241 KFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALELQKEGPVQGNLDPMRLVVGNQV 300 KFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALELQKEGPVQGNLDPMRLVVGNQV Sbjct: 241 KFISFAKGAGYMLKNYRRLTDSNAIGLDWSVPLSFALELQKEGPVQGNLDPMRLVVGNQV 300 Query: 301 MIDGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRSEKI 346 MIDGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRSEKI Sbjct: 301 MIDGVNAILDVLGSGPFIFNLGHGITPQVDPKNVLDLVKTVRSEKI 346 >gi|254781012|ref|YP_003065425.1| dihydroorotase [Candidatus Liberibacter asiaticus str. psy62] Length = 349 Score = 24.6 bits (52), Expect = 2.6, Method: Compositional matrix adjust. Identities = 13/29 (44%), Positives = 19/29 (65%) Query: 108 LLNPNIDLFLNYLLPIFQSISILRKKLPN 136 +LN +ID+F L+ I + + LR KLPN Sbjct: 139 ILNQDIDIFDRELMFIDKILDPLRNKLPN 167 >gi|254780793|ref|YP_003065206.1| integral membrane protein MviN [Candidatus Liberibacter asiaticus str. psy62] Length = 518 Score = 23.9 bits (50), Expect = 3.9, Method: Compositional matrix adjust. Identities = 12/37 (32%), Positives = 19/37 (51%) Query: 138 ITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNS 174 I I F G P VA +M+S ++ + F+ QN+ Sbjct: 314 IECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNT 350 >gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 468 Score = 22.7 bits (47), Expect = 8.9, Method: Compositional matrix adjust. Identities = 11/41 (26%), Positives = 21/41 (51%) Query: 138 ITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNSRAFN 178 I +I F PW++ S+++ I G+N + + + FN Sbjct: 52 IEVIDFREIPWSIISFLVLSPGIALTGENAHWCVKLANQFN 92 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.324 0.142 0.428 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 230,287 Number of Sequences: 1233 Number of extensions: 9728 Number of successful extensions: 17 Number of sequences better than 100.0: 4 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 4 length of query: 346 length of database: 328,796 effective HSP length: 75 effective length of query: 271 effective length of database: 236,321 effective search space: 64042991 effective search space used: 64042991 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 39 (19.6 bits)