RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780813|ref|YP_003065226.1| Maf-like protein [Candidatus
Liberibacter asiaticus str. psy62]
         (199 letters)



>gnl|CDD|30773 COG0424, Maf, Nucleotide-binding protein implicated in inhibition
           of septum formation [Cell division and chromosome
           partitioning].
          Length = 193

 Score =  163 bits (415), Expect = 2e-41
 Identities = 67/200 (33%), Positives = 104/200 (52%), Gaps = 10/200 (5%)

Query: 1   MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKK 60
           M+  +ILASSS  RR+LL+  GI F V+  +IDE          + + P +  L LAE+K
Sbjct: 1   MMPRLILASSSPRRRELLEQLGIPFEVIPSDIDE-------PLLKAEEPREYVLRLAEEK 53

Query: 61  ALEVSNRYP-ESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQN 119
           A  V+ R P ++ VIG D  + L   I  KP D  EA + L ++SG+ H++ +   L+  
Sbjct: 54  ARAVAARLPPDALVIGADTVVVLDGRILGKPKDEEEAREMLRKLSGRTHQVYTGVALIDP 113

Query: 120 GKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSYFS 179
           GK ++  + V ++    LS+E I+ Y+       L   G+Y I   G      I+G Y +
Sbjct: 114 GKRVQSEVEVTKVRFRTLSDEEIEAYVASGE--PLDKAGAYGIQGLGGLFIEKIEGDYSN 171

Query: 180 IVGLPIIELINDLKIEKVID 199
           +VGLP+ EL+  L+      
Sbjct: 172 VVGLPLPELVQLLRELGFSV 191


>gnl|CDD|29954 cd00555, Maf, Nucleotide binding protein Maf. Maf has been
           implicated in inhibition of septum formation in
           eukaryotes, bacteria and archaea, but homologs in
           B.subtilis and S.cerevisiae are nonessential for cell
           division. Maf has been predicted to be a nucleotide- or
           nucleic acid-binding protein with structural similarity
           to the hypoxanthine/xanthine NTP pyrophosphatase Ham1
           from Methanococcus jannaschii, RNase H from Escherichia
           coli, and some other nucleotide or RNA-binding
           proteins..
          Length = 180

 Score =  162 bits (413), Expect = 4e-41
 Identities = 68/189 (35%), Positives = 100/189 (52%), Gaps = 10/189 (5%)

Query: 5   IILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEV 64
           +ILAS+S  RR+LL+  GI F VV  +IDE  ++ +        PE   L LAE KA  V
Sbjct: 1   LILASASPRRRELLEQLGIPFEVVPSDIDETPIKGES-------PEDYVLRLAEAKAEAV 53

Query: 65  SNRYP-ESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVL 123
           + R P ++ VIG D  + L   I  KP D  EA + L R+SG+ H + +   L+  G  L
Sbjct: 54  AARLPPDALVIGADTVVVLDGRILGKPKDREEAREMLKRLSGRTHEVYTGVALIDPGGKL 113

Query: 124 RHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSYFSIVGL 183
              +   ++   +LS+E I+ Y+     + L   G+Y I   G  L   I+G Y ++VGL
Sbjct: 114 VTDVESTKVRFRELSDEEIEAYVAS--GEPLDKAGAYGIQGLGGALIERIEGDYSNVVGL 171

Query: 184 PIIELINDL 192
           P+ EL+  L
Sbjct: 172 PLPELLKLL 180


>gnl|CDD|111445 pfam02545, Maf, Maf-like protein.  Maf is a putative inhibitor of
           septum formation in eukaryotes, bacteria, and archaea.
          Length = 193

 Score =  106 bits (267), Expect = 4e-24
 Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 11/191 (5%)

Query: 5   IILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALE- 63
           +ILAS+S  R++LL++ GI F V+    DE  +   +D      P +  + LA +KAL  
Sbjct: 3   LILASTSPRRKELLEDLGIPFEVIVSYFDEESVLYSLD------PREYVVDLACEKALAK 56

Query: 64  VSNRYP-ESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKV 122
           V+   P  + +IG D  + LG  I  KP D  EA + L ++SG  H + +   L+   K 
Sbjct: 57  VAQLAPDNALIIGADTVVILGGRILGKPKDKEEAREMLRKLSGNVHSVYTGLALISPEKN 116

Query: 123 LRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSYFSIVG 182
           L     V ++    LS+E I+ Y+     + L   G+Y I   G      I+G Y+++VG
Sbjct: 117 LLFL-EVTKVKFRDLSDEEIEAYVES--GEPLDKAGAYGIQGFGGLFIKKIEGDYYNVVG 173

Query: 183 LPIIELINDLK 193
           LP+ +L + L+
Sbjct: 174 LPLPKLRSLLR 184


>gnl|CDD|73242 cd00985, Maf_Ham1, Maf_Ham1. Maf, a nucleotide binding protein, has
           been implicated in inhibition of septum formation in
           eukaryotes, bacteria and archaea. A Ham1-related protein
           from Methanococcus jannaschii is a novel NTPase that has
           been shown to hydrolyze nonstandard nucleotides, such as
           hypoxanthine/xanthine NTP, but not standard
           nucleotides..
          Length = 131

 Score = 89.1 bits (221), Expect = 7e-19
 Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 9/131 (6%)

Query: 5   IILASSSLSRRKLLQNSG-IQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALE 63
           +ILAS S  R + L+  G I+F V+  +IDE           +  PE     LA  KA  
Sbjct: 1   LILASGSPRRLEELKQIGGIEFEVLPSDIDET--------GLKGEPEDTVEELALLKARA 52

Query: 64  VSNRYPESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVL 123
           V+ R P++ VI  D  + +      KP    EA + L  +SG+     +A  LV     +
Sbjct: 53  VAERLPDAPVIADDTGLVVDGRPGGKPARFAEALEMLRGLSGRTAEFVTAVALVDPDGKI 112

Query: 124 RHHISVAQLTM 134
                  +  +
Sbjct: 113 ITFEGETEGKI 123


>gnl|CDD|36722 KOG1509, KOG1509, KOG1509, Predicted nucleic acid-binding protein
           ASMTL [Cell cycle control, cell division, chromosome
           partitioning].
          Length = 209

 Score = 75.4 bits (185), Expect = 9e-15
 Identities = 57/195 (29%), Positives = 92/195 (47%), Gaps = 21/195 (10%)

Query: 3   KNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKAL 62
           K IILAS+S  R+++L   G+   VV    +E      +  S  + PE   +  A++KA 
Sbjct: 10  KRIILASASPRRKQILAEMGLNLEVVVSTFEE-----NLIKSSFETPEDYVVETAKQKAE 64

Query: 63  EVSNRYPE------SFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSA--- 113
           E+  R  +        VI  D   + G  IY KPVD  +A++ L R+SG+ H + +    
Sbjct: 65  EIIERLGDGEDSFPDVVISADTITTDGGEIYEKPVDKKDAKRMLKRLSGRPHSVFTGVAL 124

Query: 114 -YVLVQNGKVLRHHISVAQLTMYKLSEEFIKFYLNK--IGKKALLSVGSYQIDKEGIQLF 170
            +   Q G  +       ++   ++ EE I+ Y++     KKA    G Y I   G  L 
Sbjct: 125 IHCSSQLGTRVSEFYDETKVYFGEIPEEVIEEYVDSGEPLKKA----GGYGIQGLGAPLI 180

Query: 171 SSIKGSYFSIVGLPI 185
            S+ G + ++VGLP+
Sbjct: 181 ESVVGDFDNVVGLPL 195


>gnl|CDD|38432 KOG3222, KOG3222, KOG3222, Inosine triphosphate pyrophosphatase
           [Nucleotide transport and metabolism].
          Length = 195

 Score = 29.9 bits (67), Expect = 0.45
 Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 86  IYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMYKLSEEFIKFY 145
           + +  +D+ E + +   I+ +K ++++  V    G VL    S+    +  L   +IK++
Sbjct: 33  LINIDLDLPEIQGSPEEIAIEKCKVAAEIV---KGPVLVEDTSLCFNALGGLPGPYIKWF 89

Query: 146 LNKIGKKALLSV 157
           L K+G + L  +
Sbjct: 90  LKKLGPEGLHEM 101


>gnl|CDD|34720 COG5118, BDP1, Transcription initiation factor TFIIIB, Bdp1 subunit
           [Transcription].
          Length = 507

 Score = 28.2 bits (62), Expect = 1.6
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 16  KLLQNSGIQFSVVK---PNIDEREMEKKMDFSERKRPEKIALILAEKK 60
           K L   G  FS++    PN + ++++ K    E+  PE+I   L EKK
Sbjct: 378 KALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKVNPERINEALNEKK 425


>gnl|CDD|38860 KOG3655, KOG3655, KOG3655, Drebrins and related actin binding
           proteins [Cytoskeleton].
          Length = 484

 Score = 26.5 bits (58), Expect = 5.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 33  DEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPE 70
             +E EKK    ERK+ E+      E++  E   RY E
Sbjct: 190 LRQEEEKKKAEDERKQFEQERREREEEEHKERERRYQE 227


>gnl|CDD|119350 cd02871, GH18_chitinase_D-like, GH18 domain of Chitinase D (ChiD). 
           ChiD, a chitinase found in Bacillus circulans,
           hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine
           in chitin and chitodextrins.  The domain architecture of
           ChiD includes a catalytic glycosyl hydrolase family 18
           (GH18) domain, a chitin-binding domain, and a
           fibronectin type III domain. The chitin-binding and
           fibronectin type III domains are located either
           N-terminal or C-terminal to the catalytic domain.  This
           family includes exochitinase Chi36 from Bacillus
           cereus..
          Length = 312

 Score = 26.1 bits (58), Expect = 6.7
 Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 2/22 (9%)

Query: 139 EEFIKF--YLNKIGKKALLSVG 158
            EF      L   GKK L+S+G
Sbjct: 60  AEFKADIKALQAKGKKVLISIG 81


>gnl|CDD|34758 COG5157, CDC73, RNA polymerase II assessory factor [Transcription].
          Length = 362

 Score = 25.5 bits (55), Expect = 8.9
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 158 GSYQIDKEGIQLFSSIKGSYFSIVGLPIIELINDLKIEKV 197
           G Y     G +LF++IKG YF+  G      + +  +E++
Sbjct: 293 GRYNWRDPG-ELFNTIKGFYFARRGDQSNLYMRNWNVEEI 331


>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct
           families, the alpha-, beta-, gamma-, delta-, and
           epsilon-tubulins and a sixth family (zeta-tubulin) which
           is present only in kinetoplastid protozoa. The alpha-
           and beta-tubulins are the major components of
           microtubules, while gamma-tubulin plays a major role in
           the nucleation of microtubule assembly.  The delta- and
           epsilon-tubulins are widespread but unlike the alpha,
           beta, and gamma-tubulins they are not ubiquitous among
           eukaryotes. The alpha/beta-tubulin heterodimer is the
           structural subunit of microtubules.  The alpha- and
           beta-tubulins share 40% amino-acid sequence identity,
           exist in several isotype forms, and undergo a variety of
           posttranslational modifications.  The structures of
           alpha- and beta-tubulin are basically identical: each
           monomer is formed by a core of two beta-sheets
           surrounded by alpha-helices. The monomer structure is
           very compact, but can be divided into three regions
           based on function: the amino-terminal nucleotide-binding
           region, an intermediate taxol-binding region and the
           carboxy-terminal region which probably constitutes the
           binding surface for motor proteins. Also included in
           this group is the mitochondrial Misato/DML1 protein
           family, involved in mitochondrial fusion and in
           mitochondrial distribution and morphology..
          Length = 382

 Score = 25.7 bits (57), Expect = 9.1
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 4/36 (11%)

Query: 160 YQIDK----EGIQLFSSIKGSYFSIVGLPIIELIND 191
            Q++K    +G Q+  S+ G   S +G  ++EL++D
Sbjct: 81  KQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSD 116


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.318    0.135    0.361 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,232,679
Number of extensions: 111794
Number of successful extensions: 290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 18
Length of query: 199
Length of database: 6,263,737
Length adjustment: 89
Effective length of query: 110
Effective length of database: 4,340,536
Effective search space: 477458960
Effective search space used: 477458960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)