RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780813|ref|YP_003065226.1| Maf-like protein [Candidatus
Liberibacter asiaticus str. psy62]
         (199 letters)



>1ex2_A Protein MAF; structural genomics, PSI, protein structure
           initiative, midwest center for structural genomics,
           MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} (A:)
          Length = 189

 Score =  155 bits (392), Expect = 5e-39
 Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 10/193 (5%)

Query: 1   MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKK 60
           M K +ILAS S  R++LL    + +S++   ++E+             PE+    LA++K
Sbjct: 1   MTKPLILASQSPRRKELLDLLQLPYSIIVSEVEEKLNRNFS-------PEENVQWLAKQK 53

Query: 61  ALEVSNRYPESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNG 120
           A  V++ +P + VIG D  + L      KP D  EA   L R+SG+ H + +A  +    
Sbjct: 54  AKAVADLHPHAIVIGADTMVCLDGECLGKPQDQEEAASMLRRLSGRSHSVITAVSIQAEN 113

Query: 121 KVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSYFSI 180
                     ++  + LSEE I  Y+    K+ +   G+Y I   G      I G Y+S+
Sbjct: 114 HS-ETFYDKTEVAFWSLSEEEIWTYIET--KEPMDKAGAYGIQGRGALFVKKIDGDYYSV 170

Query: 181 VGLPIIELINDLK 193
           +GLPI + +  L+
Sbjct: 171 MGLPISKTMRALR 183


>2p5x_A ASMTL, N-acetylserotonin O-methyltransferase-like protein;
           structural genomics, structural genomics consortium,
           SGC, unknown function; 2.00A {Homo sapiens} (A:)
          Length = 230

 Score =  150 bits (379), Expect = 2e-37
 Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 20/206 (9%)

Query: 1   MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKK 60
           + K ++LAS+S  R+++L N+G++F VV     E+  +     +    P   A+  A++K
Sbjct: 2   LHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDK-----ASFATPYGYAMETAKQK 56

Query: 61  ALEVSNRY------PESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAY 114
           ALEV+NR           VIG D  +++G  I  KPVD  +A + L R+SG++H + +  
Sbjct: 57  ALEVANRLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHSVFTGV 116

Query: 115 VLV-------QNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGI 167
            +V       Q    +       ++   +LSEE +  Y++    + +   G Y I   G 
Sbjct: 117 AIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHS--GEPMDKAGGYGIQALGG 174

Query: 168 QLFSSIKGSYFSIVGLPIIELINDLK 193
            L  S+ G + ++VG P+      L 
Sbjct: 175 MLVESVHGDFLNVVGFPLNHFCKQLV 200


>2amh_A Septum formation protein MAF homologue, putative; domain
           alpha-beta motif, structural genomics, PSI, protein
           structure initiative; 2.00A {Trypanosoma brucei} (A:)
          Length = 207

 Score =  140 bits (355), Expect = 9e-35
 Identities = 33/205 (16%), Positives = 73/205 (35%), Gaps = 23/205 (11%)

Query: 3   KNIILASSSLSRRKLLQNSGI----QFSVVKPNIDEREMEKKMDFSERKRPEKIALILAE 58
           + +I+ +SS  R  +L+         F ++ P+IDE+             P ++   +A 
Sbjct: 10  RTMIIGTSSAFRANVLREHFGDRFRNFVLLPPDIDEKAYRAAD-------PFELTESIAR 62

Query: 59  KKALEVSNRY--------PESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRI 110
            K   V  +           +  +  DQ +  G  +  KP+   +    +   SG   R 
Sbjct: 63  AKMKAVLEKARQHSPPISGPAIALTFDQVVVKGDEVREKPLSTEQCRSFIASYSGGGVRT 122

Query: 111 SSAYVLV-QNGKVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQL 169
            + Y L     + +    +  +    K  ++ ++  L +     + S G   ++ E +  
Sbjct: 123 VATYALCVVGTENVLVAHNETETFFSKFGDDIVERTLER--GACMNSAGGLVVEDEDMSR 180

Query: 170 F-SSIKGSYFSIVGLPIIELINDLK 193
               I G+ + + G+    +   L 
Sbjct: 181 HVVRIVGTSYGVRGMEPAVVEKLLS 205


>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate
          kinase; beta barrel, switch domain, heterodimer,
          pyrophosphate, G protein; HET: GDP AGS; 2.70A
          {Pseudomonas syringae PV} (B:1-238)
          Length = 238

 Score = 26.7 bits (57), Expect = 2.3
 Identities = 3/27 (11%), Positives = 10/27 (37%)

Query: 29 KPNIDEREMEKKMDFSERKRPEKIALI 55
          + ++   ++   +   ERK   +    
Sbjct: 4  QSDLISEDILAYLGQHERKEXLRFLTC 30


>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein);
           HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense}
           (A:1-69,A:232-326,A:536-587)
          Length = 216

 Score = 25.3 bits (55), Expect = 5.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 3   KNIILASSSLSRRKLLQNSGI 23
             ++LA+ S     +L+ SGI
Sbjct: 125 HEVLLAAGSAISPLILEYSGI 145


>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding
          domain (ABD), F-actin- crosslinking, structural
          genomics; 2.40A {Arabidopsis thaliana}
          (A:1-138,A:263-296)
          Length = 172

 Score = 25.3 bits (55), Expect = 6.4
 Identities = 12/37 (32%), Positives = 16/37 (43%)

Query: 26 SVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKAL 62
            V   IDER +  K   +  +R E   L L   KA+
Sbjct: 55 VAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAV 91


>3eyr_A Uncharacterized lipoprotein YCEB; ER542 NESG X-RAY YCEB_COLI
           P0AB26, structural genomics, PSI- 2, protein structure
           initiative; 2.01A {Escherichia coli K12} (A:)
          Length = 178

 Score = 24.4 bits (53), Expect = 9.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 125 HHISVAQLTMYKLSEEFIKFYLNK 148
           HH    QLT Y ++E+ I   L K
Sbjct: 7   HHSHXNQLTQYTITEQEINQSLAK 30


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.318    0.135    0.361 

Gapped
Lambda     K      H
   0.267   0.0651    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,400,345
Number of extensions: 59563
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 8
Length of query: 199
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 115
Effective length of database: 2,116,429
Effective search space: 243389335
Effective search space used: 243389335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)