RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780813|ref|YP_003065226.1| Maf-like protein [Candidatus
Liberibacter asiaticus str. psy62]
(199 letters)
>1ex2_A Protein MAF; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} SCOP:
c.51.4.2 PDB: 1exc_A*
Length = 189
Score = 168 bits (428), Expect = 6e-43
Identities = 56/193 (29%), Positives = 93/193 (48%), Gaps = 10/193 (5%)
Query: 1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKK 60
M K +ILAS S R++LL + +S++ ++E + PE+ LA++K
Sbjct: 1 MTKPLILASQSPRRKELLDLLQLPYSIIVSEVEE-------KLNRNFSPEENVQWLAKQK 53
Query: 61 ALEVSNRYPESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNG 120
A V++ +P + VIG D + L KP D EA L R+SG+ H + +A +
Sbjct: 54 AKAVADLHPHAIVIGADTMVCLDGECLGKPQDQEEAASMLRRLSGRSHSVITAVSIQAEN 113
Query: 121 KVLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSYFSI 180
+ ++ + LSEE I Y+ K+ + G+Y I G I G Y+S+
Sbjct: 114 HSETFY-DKTEVAFWSLSEEEIWTYIET--KEPMDKAGAYGIQGRGALFVKKIDGDYYSV 170
Query: 181 VGLPIIELINDLK 193
+GLPI + + L+
Sbjct: 171 MGLPISKTMRALR 183
>2p5x_A ASMTL, N-acetylserotonin O-methyltransferase-like protein;
structural genomics, structural genomics consortium,
SGC, unknown function; 2.00A {Homo sapiens}
Length = 230
Score = 129 bits (324), Expect = 5e-31
Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 20/206 (9%)
Query: 1 MIKNIILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKK 60
+ K ++LAS+S R+++L N+G++F VV E+ D + P A+ A++K
Sbjct: 2 LHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKL-----DKASFATPYGYAMETAKQK 56
Query: 61 ALEVSNRY------PESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAY 114
ALEV+NR VIG D +++G I KPVD +A + L R+SG++H + +
Sbjct: 57 ALEVANRLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHSVFTGV 116
Query: 115 VLVQNGK-------VLRHHISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGI 167
+V + ++ +LSEE + Y++ + + G Y I G
Sbjct: 117 AIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSG--EPMDKAGGYGIQALGG 174
Query: 168 QLFSSIKGSYFSIVGLPIIELINDLK 193
L S+ G + ++VG P+ L
Sbjct: 175 MLVESVHGDFLNVVGFPLNHFCKQLV 200
>2amh_A Septum formation protein MAF homologue, putative; domain alpha-beta
motif, structural genomics, PSI, protein structure
initiative; 2.00A {Trypanosoma brucei} SCOP: c.51.4.2
Length = 207
Score = 114 bits (286), Expect = 1e-26
Identities = 34/200 (17%), Positives = 69/200 (34%), Gaps = 9/200 (4%)
Query: 1 MIKNIILASSSLSRRKLLQNSG----IQFSVVKPNIDEREMEKKMDFS-ERKRPEKIALI 55
I+ +I+ +SS R +L+ F ++ P+IDE+ F
Sbjct: 8 EIRTMIIGTSSAFRANVLREHFGDRFRNFVLLPPDIDEKAYRAADPFELTESIARAKMKA 67
Query: 56 LAEKKALEVSNRYPESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYV 115
+ EK + + DQ + G + KP+ + + SG R + Y
Sbjct: 68 VLEKARQHSPPISGPAIALTFDQVVVKGDEVREKPLSTEQCRSFIASYSGGGVRTVATYA 127
Query: 116 LVQNGKVLRH-HISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLF-SSI 173
L G + + K ++ ++ L + + S G ++ E + I
Sbjct: 128 LCVVGTENVLVAHNETETFFSKFGDDIVERTLER--GACMNSAGGLVVEDEDMSRHVVRI 185
Query: 174 KGSYFSIVGLPIIELINDLK 193
G+ + + G+ + L
Sbjct: 186 VGTSYGVRGMEPAVVEKLLS 205
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 40.3 bits (94), Expect = 3e-04
Identities = 29/152 (19%), Positives = 48/152 (31%), Gaps = 66/152 (43%)
Query: 4 NIILASS---SLSRRKLLQNSGIQFSVVKP-------NIDEREMEK-------KMDFSER 46
N L + +S L N V P N+ R+ + ++ FSER
Sbjct: 357 NSHLPAGKQVEIS----LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 47 KRPEKIALILAEKKALEVSNRY-PESFVIGCDQTMSLGSSIYHKP-----VDMLE---AE 97
K L+ SNR+ P + +S +H D++ +
Sbjct: 413 K--------------LKFSNRFLP----V---------ASPFHSHLLVPASDLINKDLVK 445
Query: 98 KNLLRISGKKHRISSAYVLV---QNGKVLRHH 126
N + + K +I V +G LR
Sbjct: 446 NN-VSFNAKDIQIP-----VYDTFDGSDLRVL 471
Score = 36.5 bits (84), Expect = 0.004
Identities = 38/195 (19%), Positives = 80/195 (41%), Gaps = 56/195 (28%)
Query: 34 EREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGCDQTM---SLG-----SS 85
E+ + F++ P AL L EK A E +I D T SLG +S
Sbjct: 1722 EKGLLSATQFTQ---P---ALTLMEKAAFE---DLKSKGLIPADATFAGHSLGEYAALAS 1772
Query: 86 IYHKPVDMLEAEKNLLRI---SGKKHRIS--------SAY--VLVQNGKVLRHHISVAQL 132
+ D++ E +L+ + G +++ S Y + + G+V
Sbjct: 1773 L----ADVMSIE-SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV---------- 1817
Query: 133 TMYKLSEEFIKFYLNKIGKKA--LLSVGSYQIDKE------GIQLFSSIKG--SYFSIVG 182
S+E +++ + ++GK+ L+ + +Y ++ + ++ ++ ++ +
Sbjct: 1818 -AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQK 1876
Query: 183 LPIIELINDLKIEKV 197
+ IIEL L +E+V
Sbjct: 1877 IDIIELQKSLSLEEV 1891
Score = 30.3 bits (68), Expect = 0.26
Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 55/140 (39%)
Query: 94 LEAEKNLLR-------ISGKK--HRISSA-YVLVQNGKV------------------LRH 125
L K L++ ++ + + +SA + V G LR
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 126 HISVAQL-TMYK-LSEEFIKFYLNKIGKKAL--LSVGSYQIDK---EGIQLFSSIKG--- 175
L Y L + IKF + L L + +K +G+ + ++
Sbjct: 176 ------LYQTYHVLVGDLIKF----SAET-LSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 176 ----SYF-SI-VGLPIIELI 189
Y SI + P+I +I
Sbjct: 225 TPDKDYLLSIPISCPLIGVI 244
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica
serovar typhimurium STR. unknown function; HET: PO4;
1.75A {Salmonella enterica subsp} PDB: 3n77_A
Length = 165
Score = 28.8 bits (64), Expect = 0.87
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 94 LEAEKNLLRISGKKHRISSAYVLVQNGKVL 123
L E + + + R ++ +G L
Sbjct: 13 LGTENLYFQSNAMRQRTIVCPLIQNDGCYL 42
>2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage,
riken structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.68A {Homo sapiens} PDB:
1v5h_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A*
Length = 193
Score = 27.4 bits (60), Expect = 2.4
Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 10/101 (9%)
Query: 36 EMEKKMDFSERKRPEKIA-LILAEKKALEVSNRYPESFVIGCDQTMSLGSSIYHKPVDML 94
MEK E +R E+ L AE+KA++ + +G +I +
Sbjct: 3 HMEKVPGEMEIERRERSEELSEAERKAVQ------AMWARLYANCEDVGVAILVR---FF 53
Query: 95 EAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVAQLTMY 135
+ + + + + ++ ++ +H V
Sbjct: 54 VNFPSAKQYFSQFKHMEDPLEMERSPQLRKHACRVMGALNT 94
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase
domain and reductase domain, hydrolase, oxidoreductase;
2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB:
2d5n_A* 3ex8_A*
Length = 373
Score = 27.2 bits (59), Expect = 2.7
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 25/90 (27%)
Query: 31 NIDEREMEKKMDFSERKRPEKIALILAEKKALEVSNRYPESFVIGC-----DQTMSLGSS 85
+++E M K+AL LA++ + + +G Q + +G
Sbjct: 12 SMEEYYM-------------KLALDLAKQGEGQTESNPL----VGAVVVKDGQIVGMG-- 52
Query: 86 IYHKPVDMLEAEKNLLRISGKKHRISSAYV 115
H AE + + ++G + YV
Sbjct: 53 -AHLKYGEAHAEVHAIHMAGAHAEGADIYV 81
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 701
Score = 26.5 bits (58), Expect = 4.5
Identities = 14/104 (13%), Positives = 26/104 (25%), Gaps = 7/104 (6%)
Query: 31 NIDEREMEKKMDFSER----KRPEKIALILAEKKALEVSNRYPESFVIGCDQTMSLGSSI 86
+ E+ K + E K + + LE+SN + L
Sbjct: 131 SQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNA---LEISSEMGLKILEDVF 187
Query: 87 YHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHHISVA 130
+ K LR + L+ + S+
Sbjct: 188 PEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSID 231
>1s99_A YKOF; thiamin-binding protein, ACT-domain family, ligand binding
protein; 1.65A {Bacillus subtilis} SCOP: d.58.48.2 PDB:
1sbr_A* 1s7h_A
Length = 200
Score = 26.3 bits (58), Expect = 5.4
Identities = 9/52 (17%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 126 HISVAQLTMYKLSEEFIKFYLNKIGKKALLSVGSYQIDKEGIQLFSSIKGSY 177
I+ + ++Y ++++FI + K AL + + ++ + + + ++GS
Sbjct: 9 RIAGFRFSLYPMTDDFI-----SVIKSALAATDTSKVWTKTDHISTVLRGSI 55
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus
influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G*
1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C*
1ht2_A* 1ned_A
Length = 174
Score = 25.8 bits (56), Expect = 7.0
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 13/77 (16%)
Query: 67 RYPESFVIGCDQTMSLGSSIYHKPVDMLEAEKNLLRISGKKHRISSAYVLVQNGKVLRHH 126
R V+G D +SLG+++ K R+ + VL
Sbjct: 7 RRNGQVVVGGDGQVSLGNTVMKGNAR-------------KVRRLYNGKVLAGFAGGTADA 53
Query: 127 ISVAQLTMYKLSEEFIK 143
++ +L KL
Sbjct: 54 FTLFELFERKLEMHQGH 70
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.318 0.135 0.361
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,636,537
Number of extensions: 73719
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 15
Length of query: 199
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 111
Effective length of database: 3,559,758
Effective search space: 395133138
Effective search space used: 395133138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)