HHsearch alignment for GI: 254780814 and conserved domain: PRK03660
>PRK03660 anti-sigma F factor; Provisional.
Probab=95.23 E-value=0.063 Score=34.11 Aligned_cols=88 Identities=19% Similarity=0.330 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHCCC-CEEEEEEC--CCC-EEEEEECCCCCC-CCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEE
Q ss_conf 4565675557886860779-75799983--898-399997684453-640777885001256425011323289860483
Q gi|254780814|r 43 HMIYEVLDNAIDESLEGYA-DIITVTLN--MDG-SCTVSDNGRGIP-TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 (803)
Q Consensus 43 hlv~EiidNsvDe~~~g~~-~~I~V~i~--~dg-sisV~dnGrGIP-v~~h~~~~~~~~E~i~t~L~ag~kfd~~~yk~s 117 (803)
T Consensus 42 lAV~EA~tNaI~H~y~~~~~g~I~I~~~~~~~~l~I~V~D~G~Gid~~~~~~~-----P--~~t~-------~~-----~ 102 (146)
T PRK03660 42 TAVSEAVTNAIIHGYENNPDGIVYIEAEIEDEELEITVRDEGKGIEDVEEARQ-----P--LFTT-------KP-----E 102 (146)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCHHHCCC-----C--CCCC-------CC-----C
T ss_conf 99999999999860367999279999998099999999973789473766438-----8--7766-------87-----6
Q ss_pred CCCCCCEEEEEEECCCEEEEEEEEC-CEEEEEE
Q ss_conf 1167520377863264499999978-9599999
Q gi|254780814|r 118 GGLHGVGVSVVNALSSWLKLRIKRE-GNIYEMS 149 (803)
Q Consensus 118 gGlhGvG~s~vNalS~~~~v~v~rd-gk~~~q~ 149 (803)
T Consensus 103 ~~~~GlGl~li~~LmDeVei~s~~g~GTtV~m~ 135 (146)
T PRK03660 103 LERSGMGFTFMESFMDEVEVESEPGKGTTIRMK 135 (146)
T ss_pred CCCCCHHHHHHHHHCCEEEEEECCCCCEEEEEE
T ss_conf 675640589999838869999559997899999