HHsearch alignment for GI: 254780814 and conserved domain: PRK04184
>PRK04184 DNA topoisomerase VI subunit B; Validated.
Probab=99.40 E-value=1.6e-10 Score=100.75 Aligned_cols=187 Identities=21% Similarity=0.298 Sum_probs=126.3
Q ss_pred HHHCEECCCCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCEEEEEECC-C---CEEEEEECCCCCCCC
Q ss_conf 655123135420004587154327996325445656755578868-60779757999838-9---839999768445364
Q gi|254780814|r 12 ADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES-LEGYADIITVTLNM-D---GSCTVSDNGRGIPTD 86 (803)
Q Consensus 12 ~~~i~~L~gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~-~~g~~~~I~V~i~~-d---gsisV~dnGrGIPv~ 86 (803)
T Consensus 8 ~~~~~~iS~aEFF~kNk~~l-GFd~~~ral~ttvkE~VdNsLDAcEe~gILPdI~v~I~~~~~~~y~v~VeDNGpGI~~~ 86 (533)
T PRK04184 8 AEKFREISVAEFFEKNKHML-GFDSPARALYTTVKELVDNSLDACEEAGILPDIKVEIRRVGEDYYRVIVEDNGPGIPPE 86 (533)
T ss_pred HHHHHCCCHHHHHHHCHHHC-CCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCCCCCCHH
T ss_conf 98744179999988575641-87985317999999997331766886088986599999837856999994488998867
Q ss_pred CCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEE-----EEEEEECCEE--EEEEE----ECCEE
Q ss_conf 0777885001256425011323289860483116752037786326449-----9999978959--99998----89836
Q gi|254780814|r 87 LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWL-----KLRIKREGNI--YEMSF----INGIL 155 (803)
Q Consensus 87 ~h~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~-----~v~v~rdgk~--~~q~f----~~g~~ 155 (803)
T Consensus 87 ~-----ip---~vFGk~L~GSKf~~~--rQsRGqqGiGis~avlysQlTTGkP~~V~S~~~~~~~a~~~~l~iD~~kNep 156 (533)
T PRK04184 87 Q-----IP---KVFGKLLYGSKFHRL--RQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYEFELKIDTEKNEP 156 (533)
T ss_pred H-----HH---HHHHHHHCCCCCCHH--HHCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEEEECCCCCC
T ss_conf 8-----88---999888502532402--1147753524788877763126886599964799852699999967577873
Q ss_pred CCCC-EEECCCCCCCCEEEEEEECHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 4631-387327788870899987788854210008999999997311464169999963
Q gi|254780814|r 156 DNPL-VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213 (803)
Q Consensus 156 ~~~l-~~~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~De 213 (803)
T Consensus 157 ~i~~~~~~~~~~~~hGt~Ve~~ieg~~~~~----r~~v~eYlr~TaIvnPhA~I~f~~P 211 (533)
T PRK04184 157 EILEREERDNWKRWHGTRVELELEGNWYRA----KQGIYEYLKRTAIVNPHARITLKDP 211 (533)
T ss_pred EEECCCEECCCCCCCCEEEEEEEEEEHHHH----HCCHHHHHHHHHCCCCCEEEEEECC
T ss_conf 453341204777888439999997641544----2369999976510378449999889