HHsearch alignment for GI: 254780814 and conserved domain: PTZ00108
>PTZ00108 DNA topoisomerase II; Provisional.
Probab=100.00 E-value=0 Score=1175.46 Aligned_cols=577 Identities=23% Similarity=0.378 Sum_probs=473.4
Q ss_pred CCCCC-CCCCCCHHHCEECCCCCHHCCCCCCEECCCCC----------------------CCHHHHHHHHHHHHHHHHHH
Q ss_conf 98764-22367865512313542000458715432799----------------------63254456567555788686
Q gi|254780814|r 1 MSDNI-QNSSYDADSIQILKGLDAVKKRPSMYIGDTDG----------------------ESGLHHMIYEVLDNAIDESL 57 (803)
Q Consensus 1 m~~~~-~~~~Y~~~~i~~L~gle~vrkRP~mYiG~t~~----------------------~~Gl~hlv~EiidNsvDe~~ 57 (803)
T Consensus 1 m~k~ktiee~Y-----qKkTqlEHILlRPDtYIGSvE~~~~~mWV~d~e~~~m~~k~v~yvPGLyKIFDEILVNAaDNk~ 75 (1506)
T PTZ00108 1 MAKNKSIEERY-----QKKSQIEHILLRPDTYIGSVEMHTQLLWVWNKEKNRMVQKNITYVPGLYKIFDEIIVNAADVKA 75 (1506)
T ss_pred CCCCCCHHHHH-----HCCCHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCHHHHHHHHHHCCCHHHHH
T ss_conf 98766689977-----5068888986289877567646510388997676838888866665347544456415144432
Q ss_pred H------CCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEE
Q ss_conf 0------7797579998389-83999976844536407778850012564250113232898604831167520377863
Q gi|254780814|r 58 E------GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNA 130 (803)
Q Consensus 58 ~------g~~~~I~V~i~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNa 130 (803)
T Consensus 76 Rd~~~~~~pmt~IKVtID~eng~ISV~NNGRGIPVeiH~kekvyvPELIFGhLlTGsNFDDdeyKVSGGrNGvGAKLvNI 155 (1506)
T PTZ00108 76 REKEKSENPMTCIKIEINKDNKKISVYNDGEGIPVDIHKEMNIYVPHMIFGELLTSDNYDDAEDRITGGRNGFGAKLTNI 155 (1506)
T ss_pred CCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEECCCCCCCCEEEEEE
T ss_conf 07543568766599999678997999979995243687767974726865207676787899563448888724578786
Q ss_pred CCCEEEEEEEEC--CEEEEEEEECCEECCCCEEECCCCCCCCEEEEEEECHHHHHHHHCCHHH---HHHHHHHHHCCCCE
Q ss_conf 264499999978--9599999889836463138732778887089998778885421000899---99999973114641
Q gi|254780814|r 131 LSSWLKLRIKRE--GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSS 205 (803)
Q Consensus 131 lS~~~~v~v~rd--gk~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~---l~~R~~~~A~Ln~g 205 (803)
T Consensus 156 FSteF~VEt~D~~~kk~ykQtw~nNM~k~~~PkIk~~~gk~yTkITFkPD~~iFgmt~ld~Di~sLL~KRvyDLAgt~-s 234 (1506)
T PTZ00108 156 FSKEFIVQCGDSSRKKEFKMTWSDNMSKFSEPHIKNYNGKDYVKVTFKPDLAKFGMTEMDDDIESLLCKRVYDLAGTC-S 234 (1506)
T ss_pred CCCEEEEEEEECCCEEEEEEEEECCCCCCCCCEEECCCCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHCCC-C
T ss_conf 268189999847953799999708971378874743689981699998488980983037789999999999973677-8
Q ss_pred EEEEEEECCCCCCC--------------------EEEECCCCCCHHHH----------HHHCCCC---------CCCC--
Q ss_conf 69999963586421--------------------01001268835776----------5300356---------5568--
Q gi|254780814|r 206 VQISLIDKRSPEPR--------------------EITMFYKGGIEAFV----------SYLDRHK---------KPLM-- 244 (803)
Q Consensus 206 l~i~l~Der~~~~~--------------------~~~f~~~~Gi~~fv----------~~l~~~~---------~~~~-- 244 (803)
T Consensus 235 VkVyLNG~rI~Ik~Fk~Yv~Lylkd~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~de~~n~~~d~~dvs~~~eP~~~~ 314 (1506)
T PTZ00108 235 VRVYLNGNRLAIKDFKSYVDLYLKDNAGDNKGNGGQSGSGSGGGSGNDNGNGGGNGGDEEANNAADNLDVSASNEPADAT 314 (1506)
T ss_pred EEEEECCCEEECCCHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 06997585100155344202675012233333333222223332111122344433201210111233210013544465
Q ss_pred ---------------CCCEEEEEEEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCC
Q ss_conf ---------------85203642003699973345317754121222246216667721035688899999999986242
Q gi|254780814|r 245 ---------------QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309 (803)
Q Consensus 245 ---------------~~~i~~~~~~~~~~veval~~~~~~~e~i~SfvN~I~T~~GGtHv~gf~~al~~~i~~y~~~~~~ 309 (803)
T Consensus 315 p~~~~~~~~~~~~d~~eii~I~e~--~~RWEVav~~Sd~~~FqqVSFVNnI~T~kGGTHVdyi~dqIvn~L~e~~~k--- 389 (1506)
T PTZ00108 315 PSKNNAANGANNNDEDEIVKIHEK--QHRWEIVVSKSDGSQFQQVSFVNSICTTKGGSHVNYIVEQLLNSLSKKANA--- 389 (1506)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECC--CCCEEEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH---
T ss_conf 432222223345665531565136--774799999778996578877676158999808999999999999999865---
Q ss_pred CCCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00012357613430572156665213763357210020261111032111026899998740035799987789998877
Q gi|254780814|r 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389 (803)
Q Consensus 310 ~Kk~k~~~~~~Diregl~~visvki~nP~F~gQTK~kL~s~~v~~~v~~~v~~~l~~~l~~n~~~ak~i~~k~~~a~~ar 389 (803)
T Consensus 390 KkK~~~~Ik~~dIKegL~aFVn~kI~NPqFdSQTKEkLtT~~~kFGSk~~LsekfikkllKs~-----IIekIl~~a~aK 464 (1506)
T PTZ00108 390 KNKGGMEIKSGHIKNHLWVFVNCLIVNPTFDSQTKETLTTKPVKFGSKCILSDKTINNVLKSP-----ILSNILLWAQAK 464 (1506)
T ss_pred HCCCCCCCCHHHHHHCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCH-----HHHHHHHHHHHH
T ss_conf 255777679899860579999997779976761015403886456355347899999998695-----999999999999
Q ss_pred HHHH--HHHHHCCCCCCCCCCCCCCCCCCCC---CCCCCCEEEEEEECCCC-----CCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 5545--5321100110012467667666655---55555217999825575-----432233465443023300562033
Q gi|254780814|r 390 DAAR--RARDLTRRKGVLDIASLPGKLADCS---ERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILN 459 (803)
Q Consensus 390 ~~a~--kar~~~rrK~~~~~~~lpgKL~Dc~---~k~~~~~eL~ivEGDSA-----ggsak~gRdr~~qai~PLrGKilN 459 (803)
T Consensus 465 a~~~LkKk~Ka~~~KkR~ri~gIp-KL~DAN~AGtk~s~~CTLiLtEGDSAK~lAvaGlsvvGRD~--~GVfPLRGKiLN 541 (1506)
T PTZ00108 465 AQVELKKKMKAGSSKARERIIGIP-KLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDK--YGVFPLKGKLLN 541 (1506)
T ss_pred HHHHHHHHHHHHCCCCHHHCCCCC-CCCCCCCCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCC--EEEEECCCEEEE
T ss_conf 999999986541144101114898-77463002799863328999637516877750402136542--234420561310
Q ss_pred HHHCCHHHHHCCHHHHHHHHHHCCCCC-CCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH-CCEEEEE
Q ss_conf 443058766323667888876257877-53321235673738998508888532899999999963077874-8959994
Q gi|254780814|r 460 VERARFDKMLSSQEIGTLITALGTGIG-QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYII 537 (803)
Q Consensus 460 v~~a~~~~i~~n~Ei~~l~~~lG~~~g-~~~~~~~~lrY~kiiimtDaD~DG~HI~~Llltff~~~~~~li~-~g~~yia 537 (803)
T Consensus 542 Vr~As~~kI~~N~EI~nIikiLGL~i~~k~~~dik~LRYGkImIMTDqDvDGSHIKGLLiNf~h~~wPsLLk~~gFl~~f 621 (1506)
T PTZ00108 542 VRDASFKQLMDNKEIQNIFKIMGLDITDKNKDDIKGLRYGSLMIMTDQDYDGSHIKGLLINMIHKFWPSLLKHKGFLSEF 621 (1506)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 13465988861388999999977786776556553445561699834889860138899999998628761876788873
Q ss_pred CCCEEEEEECCCEEEEECHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 38337887267179981457898999850011000014577654354689999999999
Q gi|254780814|r 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 (803)
Q Consensus 538 ~ppl~~~~~~K~E~YikDD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~L~~li~~~~~ 596 (803)
T Consensus 622 iTPIvK~~kg~~~~~Fyt~~eye~Wk~~~~~~~w~iKYYKGLGTSt~~EakeYF~~l~~ 680 (1506)
T PTZ00108 622 VTPIVKVQKGNQEHSFFTIAEYEQWKENTNLLGWKIKYYKGLGTSTDKEFKQYFSDIKN 680 (1506)
T ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 01035532697401127889999998638988740577643688880899999987875