HHsearch alignment for GI: 254780814 and conserved domain: TIGR00585
>TIGR00585 mutl DNA mismatch repair protein MutL; InterPro: IPR014763 This entry represents DNA mismatch repair proteins, such as MutL. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex ..
Probab=98.36 E-value=3.5e-06 Score=67.17 Aligned_cols=182 Identities=19% Similarity=0.252 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEE-
Q ss_conf 254456567555788686077975799983898--39999768445364077788500125642501132328986048-
Q gi|254780814|r 40 GLHHMIYEVLDNAIDESLEGYADIITVTLNMDG--SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV- 116 (803)
Q Consensus 40 Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dg--sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~yk~- 116 (803)
T Consensus 22 ~p~~vVKELvENSLD---AG-At~I~v~~~~gG~~~I~V~DNG~Gi~~~d~---------~~~~~~haTSKI~~~~DL~~ 88 (367)
T TIGR00585 22 RPASVVKELVENSLD---AG-ATKIEVEIEEGGLKLIEVSDNGSGIDKEDL---------ELACERHATSKIQSFEDLER 88 (367)
T ss_pred HHHHHHHHHHHHHHC---CC-CCEEEEEEEECCEEEEEEEECCCCCCHHHH---------HHHHCCCCCCCCCCHHHHHH
T ss_conf 279999998873121---48-858999996265358999977856777779---------98612357763224789998
Q ss_pred --ECCCCCCEEEEEEECCCEEEEEE------------EECCEEEEEEEECCEECCCCEEECCCCCCCCEEEEEE------
Q ss_conf --31167520377863264499999------------9789599999889836463138732778887089998------
Q gi|254780814|r 117 --SGGLHGVGVSVVNALSSWLKLRI------------KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL------ 176 (803)
Q Consensus 117 --sgGlhGvG~s~vNalS~~~~v~v------------~rdgk~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F~------ 176 (803)
T Consensus 89 i~TlGFRGEAL~Si~~v-s~~~i~t~~~~~~~W~yQ~~~~~~~~~~~~~~G~~~~--~~~~p~~~~~GT~V~V~~LF~N~ 165 (367)
T TIGR00585 89 IRTLGFRGEALASISSV-SRLTITTKTSGPTAWFYQGAADGLALQVLYAEGKNII--EEIKPAPRPVGTTVEVRDLFYNL 165 (367)
T ss_pred HHCCCCHHHHHHHHHHH-HCCEEEEEECCCCCCEECCCCCCEEEEEEECCCCEEE--ECCCCCCCCCCCEEEEECCCCCC
T ss_conf 64048346899999864-3334787425898612212356404676620687342--00256688989789973031585
Q ss_pred ECHHH-H--HHHHCCHHHHHHHHHHHHCCCCEEEEEEEEC--CCCCCCEEE-ECC--CCCCHHH-HHHHC
Q ss_conf 77888-5--4210008999999997311464169999963--586421010-012--6883577-65300
Q gi|254780814|r 177 PSSDI-F--SVQDFNYDTLQHRLRELSFLNSSVQISLIDK--RSPEPREIT-MFY--KGGIEAF-VSYLD 237 (803)
Q Consensus 177 PD~~i-F--~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~De--r~~~~~~~~-f~~--~~Gi~~f-v~~l~ 237 (803)
T Consensus 166 P~R~k~~s~k~~~~e~~~~~~~l~~~~l~~~~v~f~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~ 235 (367)
T TIGR00585 166 PVRRKEFSLKSPKKELRKILDLLERYALIHPDVSFSLTSDESFQTNGKKVLSLSTKPNQSLKERRIRSVF 235 (367)
T ss_pred CHHHHHHHCCCHHHHHHHHHHHHHHHEEECCCCEEEEEECCEECCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 2026877557806889999999864401337935899971166477410033524887307899999887