HHsearch alignment for GI: 254780814 and conserved domain: smart00433
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=100.00 E-value=0 Score=1677.08 Aligned_cols=590 Identities=54% Similarity=0.881 Sum_probs=555.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEECC
Q ss_conf 25445656755578868607797579998389839999768445364077788500125642501132328986048311
Q gi|254780814|r 40 GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 (803)
Q Consensus 40 Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dgsisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgG 119 (803)
T Consensus 1 GL~hl~~EIldNsvDe~~~g~~~~I~V~i~~dgsisV~DnGrGIPv~~h~~~~~~~~E~i~t~LhaGgkFd~~~yk~sGG 80 (594)
T smart00433 1 GLHHLVDEIVDNAADEALAGYMDTIKVTIDKDNSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSGG 80 (594)
T ss_pred CCEEEEEEEEECHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEECC
T ss_conf 96799845667377688428997799999279849999899765423667679712014761322436889985167067
Q ss_pred CCCCEEEEEEECCCEEEEEEEECCEEEEEEEEC-CEECCCCEEECCCCCCCCEEEEEEECHHHHHH-HHCCHHHHHHHHH
Q ss_conf 675203778632644999999789599999889-83646313873277888708999877888542-1000899999999
Q gi|254780814|r 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLR 197 (803)
Q Consensus 120 lhGvG~s~vNalS~~~~v~v~rdgk~~~q~f~~-g~~~~~l~~~~~~~~~~GT~I~F~PD~~iF~~-~~~~~d~l~~R~~ 197 (803)
T Consensus 81 lhGvGasvvNalS~~f~Vev~r~gk~y~q~f~~~g~~~~~~~~~~~~-~k~GT~I~F~PD~~iF~~~~~~~~~~l~~Rl~ 159 (594)
T smart00433 81 LHGVGASVVNALSTEFEVEVARDGKEYKQSFSNNGKPLSEPKIIGDT-KKDGTKVTFKPDLEIFGMTTDDDFELLKRRLR 159 (594)
T ss_pred CCCCCEEEEEECCCEEEEEEEECCEEEEEEECCCCEECCCCEECCCC-CCCCEEEEEEECHHHHCCCCCCCHHHHHHHHH
T ss_conf 88711476584127399999989999999990888489885554788-99951999997878839975466999999999
Q ss_pred HHHCCCCEEEEEEEECCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCEEEEEE
Q ss_conf 73114641699999635864210100126883577653003565568852036420036999733453177541212222
Q gi|254780814|r 198 ELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277 (803)
Q Consensus 198 ~~A~Ln~gl~i~l~Der~~~~~~~~f~~~~Gi~~fv~~l~~~~~~~~~~~i~~~~~~~~~~veval~~~~~~~e~i~Sfv 277 (803)
T Consensus 160 ~~A~Ln~gl~I~lnder~~--~~~~f~~~~Gl~dyv~~~~~~~~~~~~~~~~~~~~~~~~~~eva~~~s~~~~~~~~SFv 237 (594)
T smart00433 160 ELAFLNKGVKITLNDERSD--EEETFLFEGGIKDYVELLNKNKELLSPEPTYIEGEKDNIRVEVAFQYTDGYSENIVSFV 237 (594)
T ss_pred HHHCCCCCCEEEEEEECCC--CEEEEECCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCEEE
T ss_conf 9842388838999984378--45789717879999998538987678874587787168269999996598872100023
Q ss_pred CCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCHHHHCCCCCCHHHH
Q ss_conf 46216667721035688899999999986242000123576134305721566652137633572100202611110321
Q gi|254780814|r 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 (803)
Q Consensus 278 N~I~T~~GGtHv~gf~~al~~~i~~y~~~~~~~Kk~k~~~~~~Diregl~~visvki~nP~F~gQTK~kL~s~~v~~~v~ 357 (803)
T Consensus 238 N~I~T~~GGTHv~gf~~al~~~i~~~~~k~~~~K~--~~i~~~DIregL~~vIsvki~nPqFegQTKekL~~~~~~~~v~ 315 (594)
T smart00433 238 NNIATTEGGTHENGFKDALTRVINEYAKKKKKLKE--KNIKGEDVREGLTAFISVKIPEPQFEGQTKEKLGTSEVRFGVE 315 (594)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCHHHHHCCCEEEEEEEECCCCCCCCHHHHHCCHHHHHHHH
T ss_conf 14788999848899999999999999998474244--6799999852336999998248730664213435977765689
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 11026899998740035799987789998877554553211001100124676676666555555521799982557543
Q gi|254780814|r 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437 (803)
Q Consensus 358 ~~v~~~l~~~l~~n~~~ak~i~~k~~~a~~ar~~a~kar~~~rrK~~~~~~~lpgKL~Dc~~k~~~~~eL~ivEGDSAgg 437 (803)
T Consensus 316 ~~v~~~l~~~l~~n~~~a~~Ii~k~~~~a~ar~~ak~~k~~~rk~-~~~~~~lpgKL~Dc~~~~~~~~eLfivEGDSA~g 394 (594)
T smart00433 316 KIVSECLLSFLEENPVEASKIVEKVLLAAKARAAAKKARELTRKK-KLSKISLPGKLADASSAGPKKCELFLVEGDSAGG 394 (594)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC
T ss_conf 999998866654398988999999999999999999768775654-2112578866724356798862899973478874
Q ss_pred CCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 22334654430233005620334430587663236678888762578775332123567373899850888853289999
Q gi|254780814|r 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517 (803)
Q Consensus 438 sak~gRdr~~qai~PLrGKilNv~~a~~~~i~~n~Ei~~l~~~lG~~~g~~~~~~~~lrY~kiiimtDaD~DG~HI~~Ll 517 (803)
T Consensus 395 sAk~grdr~~qailPLRGKiLNv~~a~~~ki~~N~Ei~~li~alG~~~g~~-~d~~~LRY~kIiImTDADvDG~HI~~LL 473 (594)
T smart00433 395 SAKSGRDRDFQAILPLRGKLLNVEKASLDKILKNEEIQALITALGLGIGKD-FDIEKLRYGKIIIMTDADVDGSHIKGLL 473 (594)
T ss_pred CEEEEECCCCEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCEEEEEECCCCCHHHHHHHH
T ss_conf 337751255155531476015355468888751078999999977787876-6711067782899977898757899999
Q ss_pred HHHHHHHHHHHHHCCEEEEECCCEEEEEECCCEEEEE--CHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999963077874895999438337887267179981--45789899985001100001457765435468999999999
Q gi|254780814|r 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK--DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 (803)
Q Consensus 518 ltff~~~~~~li~~g~~yia~ppl~~~~~~K~E~Yik--DD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~L~~li~~~~ 595 (803)
T Consensus 474 ltff~r~~p~Li~~G~vy~a~pPL~kv~~~~~~~~~~~~~~~e~~~~~~~~----------------------------- 524 (594)
T smart00433 474 LTFFYRYMPPLIEAGFVYIAIPPLYKVTKGKKKYVYSFYSLDEYEKWLETK----------------------------- 524 (594)
T ss_pred HHHHHHHHHHHHHCCEEEEEECCEEEEEECCCCEEEEECCCHHHHHHHHHH-----------------------------
T ss_conf 999998769988679699980988999948940799843747999999862-----------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEEEECCCCEEE
Q ss_conf 99999986434457999998874211351123577899999999887653100001100244567059999951853026
Q gi|254780814|r 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQF 675 (803)
Q Consensus 596 ~~~~~l~~l~~~~~~~lle~l~~~~~l~~~~d~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~Gv~~~~ 675 (803)
T Consensus 525 -------------------------------------------------------------------------------- 524 (594)
T smart00433 525 -------------------------------------------------------------------------------- 524 (594)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EECHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHCCC
Q ss_conf 64667741642789999888877511455027655825873998999999998630676286037777889557223038
Q gi|254780814|r 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTL 755 (803)
Q Consensus 676 ~l~~~~~~s~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~i~s~~el~~~i~~~gkKG~sIQRYKGLGEMNPeQLWETTM 755 (803)
T Consensus 525 ----------------------------------------------------~~~~~~~~i~ryKGLGem~~~ql~ettm 552 (594)
T smart00433 525 ----------------------------------------------------GGNKSKYEIQRYKGLGEMNADQLWETTM 552 (594)
T ss_pred ----------------------------------------------------HCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf ----------------------------------------------------0678983069631267899899998720
Q ss_pred CHHHCEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 961340212367988988878656418998762899885244
Q gi|254780814|r 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 (803)
Q Consensus 756 DP~tRtLLqV~IeDa~~Ad~iF~~LMGD~VEPRReFIe~NAL 797 (803)
T Consensus 553 ~p~~r~l~~v~~~d~~~~~~~~~~lmg~~~~~Rk~~i~~~a~ 594 (594)
T smart00433 553 DPERRTLLFVTLDDADEADLIFSALMGDKVEPRKEWIEENAP 594 (594)
T ss_pred CHHHEEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHCCC
T ss_conf 963636999976866779999998769996899999997298