HHsearch results for GI: 254780814 and protein with PDBid: 1mu5_A
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.54 E-value=5.9e-13 Score=118.01 Aligned_cols=182 Identities=18% Similarity=0.261 Sum_probs=125.0
Q ss_pred EECCCCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCEEEEEECC--CC----EEEEEECCCCCCCCCC
Q ss_conf 23135420004587154327996325445656755578868-60779757999838--98----3999976844536407
Q gi|254780814|r 16 QILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES-LEGYADIITVTLNM--DG----SCTVSDNGRGIPTDLH 88 (803)
Q Consensus 16 ~~L~gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~-~~g~~~~I~V~i~~--dg----sisV~dnGrGIPv~~h 88 (803)
+.++-.|--.+-..| .|-.+..+.|++.|.|+||||+|.. -+|.+..|.|+|.. ++ .|+|.|||.|||.+..
T Consensus 9 ~~~s~~eff~~N~~i-~gf~~~~~~l~~~v~ElV~NAiDa~~~~g~~p~I~I~I~~~~~~~~~~~I~V~DNG~GI~~e~i 87 (471)
T 1mu5_A 9 TSLSPAEFFKRNPEL-AGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEV 87 (471)
T ss_dssp --CCHHHHHHHCGGG-TTCSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGH
T ss_pred HHCCHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCHHHH
T ss_conf 645999998863564-2778702169999999999999978855998716999997368886899999962899999999
Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCC-----EEEEEEEECC--EEEEEEEEC----CEECC
Q ss_conf 778850012564250113232898604831167520377863264-----4999999789--599999889----83646
Q gi|254780814|r 89 KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSS-----WLKLRIKREG--NIYEMSFIN----GILDN 157 (803)
Q Consensus 89 ~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~-----~~~v~v~rdg--k~~~q~f~~----g~~~~ 157 (803)
..||+.+++|+||... -++|..|+|++.+..+|. .++|+....+ +.|...+.- +.+..
T Consensus 88 --------~~iF~r~~~~sk~~~~---~~~G~~GlGl~~~~~~s~~~~G~~i~V~S~~~~~~~~~~~~l~id~~kn~p~i 156 (471)
T 1mu5_A 88 --------PNAFGRVLYSSKYVNR---QTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPII 156 (471)
T ss_dssp --------HHHHHCCCCC-CCCCS---CCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEE
T ss_pred --------HHHHHHHCCCCCCCCC---CCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCC
T ss_conf --------9986502625676650---36896213489999999973794699999448997379987322135677656
Q ss_pred C-CEEECCCCCCCCEEEEEEECHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 3-1387327788870899987788854210008999999997311464169999963
Q gi|254780814|r 158 P-LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213 (803)
Q Consensus 158 ~-l~~~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~De 213 (803)
. ...+......+||.|++..+...... ...+...++..|..||-++|+|.+.
T Consensus 157 ~~~~~~~~~~~~~Gt~v~l~~~~~~~~~----~~~i~eyl~rtAi~nPha~i~~~~p 209 (471)
T 1mu5_A 157 VERGSVENTRGFHGTSVAISIPGDWPKA----KSRIYEYIKRTYIITPYAEFIFKDP 209 (471)
T ss_dssp EEEEEEECCTTCCEEEEEEEEECCHHHH----HHHHHHHHHHHHHHCTTCEEEEECT
T ss_pred CCCEEEECCCCCCCEEEEEEECCHHHHH----HHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 7870660576667716998503017777----7789999988764088718999869