HHsearch results for GI: 254780814 and protein with PDBid: 1mu5_A

>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.54  E-value=5.9e-13  Score=118.01  Aligned_cols=182  Identities=18%  Similarity=0.261  Sum_probs=125.0

Q ss_pred             EECCCCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCEEEEEECC--CC----EEEEEECCCCCCCCCC
Q ss_conf             23135420004587154327996325445656755578868-60779757999838--98----3999976844536407
Q gi|254780814|r   16 QILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES-LEGYADIITVTLNM--DG----SCTVSDNGRGIPTDLH   88 (803)
Q Consensus        16 ~~L~gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~-~~g~~~~I~V~i~~--dg----sisV~dnGrGIPv~~h   88 (803)
                      +.++-.|--.+-..| .|-.+..+.|++.|.|+||||+|.. -+|.+..|.|+|..  ++    .|+|.|||.|||.+..
T Consensus         9 ~~~s~~eff~~N~~i-~gf~~~~~~l~~~v~ElV~NAiDa~~~~g~~p~I~I~I~~~~~~~~~~~I~V~DNG~GI~~e~i   87 (471)
T 1mu5_A            9 TSLSPAEFFKRNPEL-AGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEV   87 (471)
T ss_dssp             --CCHHHHHHHCGGG-TTCSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGH
T ss_pred             HHCCHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCHHHH
T ss_conf             645999998863564-2778702169999999999999978855998716999997368886899999962899999999


Q ss_pred             CCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCC-----EEEEEEEECC--EEEEEEEEC----CEECC
Q ss_conf             778850012564250113232898604831167520377863264-----4999999789--599999889----83646
Q gi|254780814|r   89 KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSS-----WLKLRIKREG--NIYEMSFIN----GILDN  157 (803)
Q Consensus        89 ~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~-----~~~v~v~rdg--k~~~q~f~~----g~~~~  157 (803)
                              ..||+.+++|+||...   -++|..|+|++.+..+|.     .++|+....+  +.|...+.-    +.+..
T Consensus        88 --------~~iF~r~~~~sk~~~~---~~~G~~GlGl~~~~~~s~~~~G~~i~V~S~~~~~~~~~~~~l~id~~kn~p~i  156 (471)
T 1mu5_A           88 --------PNAFGRVLYSSKYVNR---QTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPII  156 (471)
T ss_dssp             --------HHHHHCCCCC-CCCCS---CCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEE
T ss_pred             --------HHHHHHHCCCCCCCCC---CCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCC
T ss_conf             --------9986502625676650---36896213489999999973794699999448997379987322135677656


Q ss_pred             C-CEEECCCCCCCCEEEEEEECHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf             3-1387327788870899987788854210008999999997311464169999963
Q gi|254780814|r  158 P-LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK  213 (803)
Q Consensus       158 ~-l~~~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~De  213 (803)
                      . ...+......+||.|++..+......    ...+...++..|..||-++|+|.+.
T Consensus       157 ~~~~~~~~~~~~~Gt~v~l~~~~~~~~~----~~~i~eyl~rtAi~nPha~i~~~~p  209 (471)
T 1mu5_A          157 VERGSVENTRGFHGTSVAISIPGDWPKA----KSRIYEYIKRTYIITPYAEFIFKDP  209 (471)
T ss_dssp             EEEEEEECCTTCCEEEEEEEEECCHHHH----HHHHHHHHHHHHHHCTTCEEEEECT
T ss_pred             CCCEEEECCCCCCCEEEEEEECCHHHHH----HHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             7870660576667716998503017777----7789999988764088718999869