HHsearch results for GI: 254780814 and protein with PDBid: 2q2e_B
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=100.00 E-value=0 Score=713.67 Aligned_cols=579 Identities=12% Similarity=0.073 Sum_probs=462.1
Q ss_pred CCCCCHHHCEECCCCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHH-HHHCCCCEEEEEECCCC----EEEEEECCC
Q ss_conf 2367865512313542000458715432799632544565675557886-86077975799983898----399997684
Q gi|254780814|r 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE-SLEGYADIITVTLNMDG----SCTVSDNGR 81 (803)
Q Consensus 7 ~~~Y~~~~i~~L~gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe-~~~g~~~~I~V~i~~dg----sisV~dnGr 81 (803)
-+.|=|+..+.++..|-..+.+.|.-.||. .+||||+|+|+||||+|+ +.+|||+.|.|+|+.|| +|+|.||||
T Consensus 5 ~~~~~~~~~~~~~~~ef~~~~~~~l~~~~~-~~~L~~~v~Elv~Na~Da~~~~g~~~~I~v~i~~~~~~~~~i~V~DnG~ 83 (621)
T 2q2e_B 5 IAEELAKKQKSISVAEFFEKNRQILGFDSA-PRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGP 83 (621)
T ss_dssp ------CCCCCSCSHHHHHHSTTTSSCSSH-HHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEECC
T ss_conf 899998522217899999973767457886-2178998999997188689763999825999996899646999998489
Q ss_pred CCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCE-----EEEEEE--ECCEEEEEEEECCE
Q ss_conf 45364077788500125642501132328986048311675203778632644-----999999--78959999988983
Q gi|254780814|r 82 GIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSW-----LKLRIK--REGNIYEMSFINGI 154 (803)
Q Consensus 82 GIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~-----~~v~v~--rdgk~~~q~f~~g~ 154 (803)
|||++.|+ .+||+||+||||+ .|+.|||+||||+++||++|.+ ++|.+. ++++.|...|..+.
T Consensus 84 Gm~~d~~~--------~~l~~l~~sgK~~--~~~~s~G~~GvG~~gv~~~S~~~va~~v~V~s~~~~~~~~~~~~~~~~~ 153 (621)
T 2q2e_B 84 GIVREQIP--------KVFAKLLYGSRFH--ALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINT 153 (621)
T ss_dssp CCCGGGHH--------HHHSCCCCC--CC--CCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCS
T ss_pred CCCHHHHH--------HHHHEECCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCCC
T ss_conf 99989999--------9860846677876--6511799766567688887686428638999961798725999841566
Q ss_pred ECCCCEE-ECCCCCCCCEEEEEEECHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCCCCHHHH
Q ss_conf 6463138-732778887089998778885421000899999999731146416999996358642101001268835776
Q gi|254780814|r 155 LDNPLVV-TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 (803)
Q Consensus 155 ~~~~l~~-~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~~~~Gi~~fv 233 (803)
....... ...+...+++.++++||...|....+..+.|.+|++++|++||+++|.|.+++.. .+.|+...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lr~~a~~~~~~~i~~~~~~~~-----~~~~~~~~---- 224 (621)
T 2q2e_B 154 STNEPDILVDEVRDWFRPHGTQIELEMRAAYVKGRRQSIYEYLKATAIVNPHARITLIDPDGN-----EEVFERAT---- 224 (621)
T ss_dssp SSCSCCCCCEEECCCSCSSCCCEEEECSCCCCCCSSSSSHHHHHHHHHHCCSCEEEECCTTSC-----CEEEECCC----
T ss_pred CCCCCCEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC-----EEEEECCC----
T ss_conf 556773110365566444047974022343012268999999999985087856998648997-----06873455----
Q ss_pred HHHCCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCEEEEEECCCCC-CCCCCEEHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 5300356556885203642003699973345317754121222246216-667721035688899999999986242000
Q gi|254780814|r 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ-KDGGTHLSGLRSALTRQITSYVEKSFGSKK 312 (803)
Q Consensus 234 ~~l~~~~~~~~~~~i~~~~~~~~~~veval~~~~~~~e~i~SfvN~I~T-~~GGtHv~gf~~al~~~i~~y~~~~~~~Kk 312 (803)
+.++ +. ..+|..+|++.+.+.+.+|++++.+ ..+|+|..+|+.+.++.++.|+...++.++
T Consensus 225 e~~~-------~~-----------~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (621)
T 2q2e_B 225 DKMP-------EP-----------AEEILPHPEGIELGTLMKMLHYTERQKLAPFLRYSFCKIGLLTAEEICKAAGLDPE 286 (621)
T ss_dssp CCCC-------CC-----------CCCCCCCSTTCCHHHHHHHHHHCC-----CTTSSSSCC--CHHHHHHHHTTTCCTT
T ss_pred CCCC-------CC-----------CCEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCC
T ss_conf 4579-------86-----------61124088765289999998536777660168764020049999999976588855
Q ss_pred CC-CCCCHHHHHCCCEEEEEEECCCCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12-35761343057215666521376335721002026111103211102689999874003579998778999887755
Q gi|254780814|r 313 DK-RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391 (803)
Q Consensus 313 ~k-~~~~~~Diregl~~visvki~nP~F~gQTK~kL~s~~v~~~v~~~v~~~l~~~l~~n~~~ak~i~~k~~~a~~ar~~ 391 (803)
.+ ..+.++++++++.+++++++++|++++|++ +++...+..+...+...|..|+.++|..++.+.++...+.+++.+
T Consensus 287 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~e~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (621)
T 2q2e_B 287 IDPHALGRHEARKLIEAFEKVKIMAPPTDCLSP--IGEDLIYRGLEKETTVDFIATSTRKPAVYSGNPFVVEVGMAYGGN 364 (621)
T ss_dssp SCSSSCCSSSSTTTTHHHHTSCCSCCCSTTCCC--CCHHHHHHHHHHHSCCSEEECCBCCCEEETTEEEEEEEEEEESSS
T ss_pred CCCCCCCHHHHHHHHEEEEEEEECCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHH
T ss_conf 472328999998466115766624896435786--677999999999999999999865977553278999999997205
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCH-HHHHC
Q ss_conf 45532110011001246766766665555555217999825575432233465443023300562033443058-76632
Q gi|254780814|r 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF-DKMLS 470 (803)
Q Consensus 392 a~kar~~~rrK~~~~~~~lpgKL~Dc~~k~~~~~eL~ivEGDSAggsak~gRdr~~qai~PLrGKilNv~~a~~-~~i~~ 470 (803)
+.|++...++|.+.....||++++||++++++.|+|+++|||||+|+++++|++.+|+++|+|||+||+.++.. +.+.-
T Consensus 365 ~~k~~~~~~~k~~~~~~~L~~~~~~~~~~~~~~~~l~~y~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~k~~~~~~~~~ 444 (621)
T 2q2e_B 365 LPKEEKISIMRFANRVPLLYQQGGCVTTHAVEDIKWKQYGLNQPGGGIPVGPVILLIHVASINVPFTSESKDAIADIPVI 444 (621)
T ss_dssp SCSSSCCCEEEEETTBCCCSCCTTCHHHHHHHHSCCTTTTCCCCSSSSCCSSCCEEEEEECSSCCBSSSSSSSBCCCHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHCCCCCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 43155156665442355554555555126511200445413465676776640101032443153778888730137889
Q ss_pred CHHHHHHHHHHCCCCCC---CCCCCCCCCCCCEEEEECCCCCCCCHHHHHHH-------HHHHHHHHHHHCCEEEEECCC
Q ss_conf 36678888762578775---33212356737389985088885328999999-------999630778748959994383
Q gi|254780814|r 471 SQEIGTLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLT-------FFFRQMPSLIHNGFLYIIKPP 540 (803)
Q Consensus 471 n~Ei~~l~~~lG~~~g~---~~~~~~~lrY~kiiimtDaD~DG~HI~~Lllt-------ff~~~~~~li~~g~~yia~pp 540 (803)
+++|...+..+|.+++. +.++....+|.+++||+|+|.+|.||++||.+ +|+|+|+.|+..|++|+|+||
T Consensus 445 ~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~k~~~i~~~~~~~~~~~~~ll~~~~~~~~~~~~r~~~~l~~~~~v~~~~~~ 524 (621)
T 2q2e_B 445 KEEIDLAIKEVARKLKHYLSKQSNLKKRREKEIIITKVLPKLAAKVAHVLEKDVPDINPVVAKIMGNLLVHRVIKNNGDG 524 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHTTSSHHHHTTTTTTTSCSSSCCCSHHHHHHHTTCEEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 99999999999886502132256688888756766554157899999986141256789999985454004358966688
Q ss_pred EEEEEECCCEEEEECHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 37887267179981457898999850011000014577654354689999999999999998643445799999887421
Q gi|254780814|r 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620 (803)
Q Consensus 541 l~~~~~~K~E~YikDD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~L~~li~~~~~~~~~l~~l~~~~~~~lle~l~~~~ 620 (803)
||++.......+..++.. ...
T Consensus 525 l~~~~~~~~~~~~~~~~~------------~~~----------------------------------------------- 545 (621)
T 2q2e_B 525 TVDVAIKVKNFGTSAYSF------------RVH----------------------------------------------- 545 (621)
T ss_dssp CEEEEEEECC----CCCE------------EEC-----------------------------------------------
T ss_pred CCCEEEEEHHHHHHHHHH------------HHH-----------------------------------------------
T ss_conf 764578623132167659------------999-----------------------------------------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEEEECCCCEEEEECHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 13511235778999999998876531000011002445670599999518530266466774164278999988887751
Q gi|254780814|r 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700 (803)
Q Consensus 621 ~l~~~~d~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~Gv~~~~~l~~~~~~s~~~~~~~~~~~~l~~~ 700 (803)
...
T Consensus 546 ------------------------------~~~----------------------------------------------- 548 (621)
T 2q2e_B 546 ------------------------------EML----------------------------------------------- 548 (621)
T ss_dssp ------------------------------CEE-----------------------------------------------
T ss_pred ------------------------------HHH-----------------------------------------------
T ss_conf ------------------------------852-----------------------------------------------
Q ss_pred CCCCEEEEECCCEEEECCHHHHHHHHHHHHHCCCEEEECC-CCCCCCHHHHHHCCCCHHHCEEEEEEHHHHHHHH-HHHH
Q ss_conf 1455027655825873998999999998630676286037-7778895572230389613402123679889888-7865
Q gi|254780814|r 701 YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK-GLGEMNASQLWETTLNPDTRSLLRVKITDASQAD-DLFS 778 (803)
Q Consensus 701 ~~~~~~l~~~~~~~~i~s~~el~~~i~~~gkKG~sIQRYK-GLGEMNPeQLWETTMDP~tRtLLqV~IeDa~~Ad-~iF~ 778 (803)
....++ ..||++ |++||||+|||||||||++|+|+||+++|+.++| ..+.
T Consensus 549 ---------------------------~~~~~~-~~~~~~~~~~e~~~~~lwettm~p~~r~~i~~~i~~~~~~~~~~~~ 600 (621)
T 2q2e_B 549 ---------------------------PCKVSG-AKPEPKVVTMGNDYDYVWDISASAGSSKVLSYKIESASEEELQKLP 600 (621)
T ss_dssp ---------------------------SCCC----CCCCCEEECSSSEEECEEECCCTTCEEEECCCCSSCGGGSCCCCC
T ss_pred ---------------------------HHCCCC-CHHHCCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCHHHCCHHHHH
T ss_conf ---------------------------311443-2000133466788778877333867724899984670225244427
Q ss_pred HHCCCCCCCHH
Q ss_conf 64189987628
Q gi|254780814|r 779 RLMGDEVEPRR 789 (803)
Q Consensus 779 ~LMGD~VEPRR 789 (803)
.||++.|+||.
T Consensus 601 ~l~~~~v~~~~ 611 (621)
T 2q2e_B 601 QLIVEGIEEEL 611 (621)
T ss_dssp BBCC-------
T ss_pred HHHHCCCCHHH
T ss_conf 87748658656