HHsearch results for GI: 254780814 and protein with PDBid: 3l4j_A
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=100.00 E-value=0 Score=574.31 Aligned_cols=226 Identities=29% Similarity=0.439 Sum_probs=202.4
Q ss_pred CCCCCCCCCCCC---CCCCCCEEEEEEECCCC-----CCCCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHCCHHHHHHH
Q ss_conf 467667666655---55555217999825575-----4322334654430233005620334430587663236678888
Q gi|254780814|r 407 IASLPGKLADCS---ERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 (803)
Q Consensus 407 ~~~lpgKL~Dc~---~k~~~~~eL~ivEGDSA-----ggsak~gRdr~~qai~PLrGKilNv~~a~~~~i~~n~Ei~~l~ 478 (803)
..++| ||.||+ ++++++||||||||||| +|++++||| ||||||||||||||++|+.+||++|+||++|+
T Consensus 3 ~~~~p-kl~da~~ag~~~~~~~~L~l~EGdSA~~~~~~g~~~~~rd--~~g~~plrGK~lN~~~~~~~~~~~n~ei~~l~ 79 (757)
T 3l4j_A 3 ITNYP-KLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRD--YYGCYPLRGKMLNVREASADQILKNAEIQAIK 79 (757)
T ss_dssp CCSCS-SCBCCTTSSSTTTTTCEEEEEEHHHHHHHHHHHHHHHCST--TEEEEEECSSCCCCTTCCHHHHHHCHHHHHHH
T ss_pred CCCCC-CHHHHHHHCCCCHHHCEEEEECCCCCCCCCCCCCCCCCCC--CEEEEECCCCEEECCCCCHHHHHHCHHHHHHH
T ss_conf 67987-6555654079986451799965758522112765321664--37885337733001469888886159999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH-CCEEEEECCCEEEEEE---CCCEEEEE
Q ss_conf 7625787753321235673738998508888532899999999963077874-8959994383378872---67179981
Q gi|254780814|r 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITR---GKSLQYVK 554 (803)
Q Consensus 479 ~~lG~~~g~~~~~~~~lrY~kiiimtDaD~DG~HI~~Llltff~~~~~~li~-~g~~yia~ppl~~~~~---~K~E~Yik 554 (803)
+||||++|+++.|+++||||||||||||||||+||+||||||||+|||+|++ +||||+++||||||+. +|...++.
T Consensus 80 ~~lG~~~~~~~~~~~~lrYg~i~imtD~D~DG~hI~~Ll~~~f~~~~p~L~~~~g~i~~~~tPl~~~~~~~~~~~~~~fy 159 (757)
T 3l4j_A 80 KIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFY 159 (757)
T ss_dssp HHTTCCCSSCCCCGGGSSCSEEEEECCSSHHHHHHHHHHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEES
T ss_pred HHHCCCCCCCCCCHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCHHHHCCCCEEEEEECCEEEEEECCCCCCEEECC
T ss_conf 99778979887861127768589998788870379999999998868897355998999969829998068875011033
Q ss_pred CHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 45789899985001100001457765435468999999999999999864344579999988742113511235778999
Q gi|254780814|r 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634 (803)
Q Consensus 555 DD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~L~~li~~~~~~~~~l~~l~~~~~~~lle~l~~~~~l~~~~d~~~~~~~ 634 (803)
+..|.+.+.-..
T Consensus 160 ~~~e~~~~~~~~-------------------------------------------------------------------- 171 (757)
T 3l4j_A 160 NMPDYEKWREEE-------------------------------------------------------------------- 171 (757)
T ss_dssp SHHHHHHHHHHT--------------------------------------------------------------------
T ss_pred CHHHHHHHHHHH--------------------------------------------------------------------
T ss_conf 254999987651--------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCEEEEEEECCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEE
Q ss_conf 99999887653100001100244567059999951853026646677416427899998888775114550276558258
Q gi|254780814|r 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 (803)
Q Consensus 635 ~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~Gv~~~~~l~~~~~~s~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 714 (803)
T Consensus 172 -------------------------------------------------------------------------------- 171 (757)
T 3l4j_A 172 -------------------------------------------------------------------------------- 171 (757)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHCCCCHHHCEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 73998999999998630676286037777889557223038961340212367988988878656418998762899885
Q gi|254780814|r 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 (803)
Q Consensus 715 ~i~s~~el~~~i~~~gkKG~sIQRYKGLGEMNPeQLWETTMDP~tRtLLqV~IeDa~~Ad~iF~~LMGD~VEPRReFIe~ 794 (803)
..+++..||||||||||||+|||||||||++|++.+++++|+ .++.++..+||+.+++||+||++
T Consensus 172 --------------~~~~~~~i~yyKGLG~~~~~e~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~F~k~~~~~RK~wL~~ 236 (757)
T 3l4j_A 172 --------------SHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGN-DKDYIDLAFSKKKADDRKEWLRQ 236 (757)
T ss_dssp --------------GGGSCEEEEECCTTTTSCHHHHHHHHHTCTTTEEEECCCCTT-HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred --------------CCCCCCCCEEECCCCCCCHHHHHHEECCCCCCEEEEEECCCH-HHHHHHHHHHCCCCHHHHHHHHC
T ss_conf --------------677643200104767676011244001554336999964615-78899999721353058999742
Q ss_pred HHHH
Q ss_conf 2441
Q gi|254780814|r 795 NSLP 798 (803)
Q Consensus 795 NAL~ 798 (803)
+--.
T Consensus 237 ~~~~ 240 (757)
T 3l4j_A 237 YEPG 240 (757)
T ss_dssp CCTT
T ss_pred CCCC
T ss_conf 6654