HHsearch results for GI: 254780814 and protein with PDBid: 3m4i_A
>3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A*
Probab=100.00 E-value=0 Score=664.10 Aligned_cols=234 Identities=53% Similarity=0.845 Sum_probs=212.8
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 66665555555217999825575432233465443023300562033443058766323667888876257877533212
Q gi|254780814|r 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492 (803)
Q Consensus 413 KL~Dc~~k~~~~~eL~ivEGDSAggsak~gRdr~~qai~PLrGKilNv~~a~~~~i~~n~Ei~~l~~~lG~~~g~~~~~~ 492 (803)
-|.||+++||++|||||||||||+|||+|||||+||||||||||+||||+++.++|++|+||++|++||||++|++ ||+
T Consensus 8 ~l~d~~~~~~~~~~L~l~EGDSA~g~a~~grd~~~~gv~PLrGK~lNv~~~~~~ki~~N~Ei~~l~~~lG~~~~~~-~d~ 86 (242)
T 3m4i_A 8 HVDDDDKTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDE-FDI 86 (242)
T ss_dssp -------CCGGGEEEEEEESSSCC---------CEEEEEEECC--------CHHHHTTCHHHHHHHHHHCSCSGGG-CCG
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCEECCCCCCCEEEEECCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCC-CCC
T ss_conf 4655567881222899977767401210324778667841589536152243878764268999999966787876-770
Q ss_pred CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECCCEEEEECHHHHHHHHHHHCCCCHH
Q ss_conf 35673738998508888532899999999963077874895999438337887267179981457898999850011000
Q gi|254780814|r 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572 (803)
Q Consensus 493 ~~lrY~kiiimtDaD~DG~HI~~Llltff~~~~~~li~~g~~yia~ppl~~~~~~K~E~YikDD~EL~~~Ll~~gl~~~~ 572 (803)
++|||||||||||||+||+||+||||||||++||+||++|+|||++||||+|+.+|+..|.....+...+.++...+..
T Consensus 87 ~~LRYgkIiimtDaD~DG~HI~~Lll~ff~~~~p~Li~~g~v~i~~~Pl~~vk~~k~~~~~~~~~~~~~~~~~~~~k~~- 165 (242)
T 3m4i_A 87 GKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAG- 165 (242)
T ss_dssp GGCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCTHHHHTTCEEEECCCSEEECCTTSCCEEESSHHHHHHHHHHHHHHT-
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCHHHHHCCCEEEECCCCEEEEEECCCEEECCCHHHHHHHHHHHHHHC-
T ss_conf 0056461799837885522037789999985478999729768971884589970673387056688999999856630-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 01457765435468999999999999999864344579999988742113511235778999999998876531000011
Q gi|254780814|r 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 (803)
Q Consensus 573 l~~~~~~~~l~ge~L~~li~~~~~~~~~l~~l~~~~~~~lle~l~~~~~l~~~~d~~~~~~~~~~l~~~l~~~~~~~~~~ 652 (803)
T Consensus 166 -------------------------------------------------------------------------------- 165 (242)
T 3m4i_A 166 -------------------------------------------------------------------------------- 165 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EECCCCCCCEEEEEEECCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCHHHHHHHHHHHHHC
Q ss_conf 00244567059999951853026646677416427899998888775114550276558258739989999999986306
Q gi|254780814|r 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732 (803)
Q Consensus 653 ~~~~~~~~~i~~~~~~~Gv~~~~~l~~~~~~s~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~i~s~~el~~~i~~~gkK 732 (803)
....+
T Consensus 166 ---------------------------------------------------------------------------~~~~k 170 (242)
T 3m4i_A 166 ---------------------------------------------------------------------------KKINK 170 (242)
T ss_dssp ---------------------------------------------------------------------------CCCCT
T ss_pred ---------------------------------------------------------------------------CCCCC
T ss_conf ---------------------------------------------------------------------------44466
Q ss_pred CCEEEECCCCCCCCHHHHHHCCCCHHHCEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC-CCCC
Q ss_conf 7628603777788955722303896134021236798898887865641899876289988524412-3669
Q gi|254780814|r 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 (803)
Q Consensus 733 G~sIQRYKGLGEMNPeQLWETTMDP~tRtLLqV~IeDa~~Ad~iF~~LMGD~VEPRReFIe~NAL~v-NLDI 803 (803)
+.+||||||||||||+|||||||||++|+|.+|+++|+.+||++|++|||++|++||+||++||.+| ||||
T Consensus 171 ~~~IkyyKGLGe~~~~Elke~~~np~~r~l~~v~~dd~~~ad~~f~~lmgk~ad~RK~wI~~~a~~v~~lDi 242 (242)
T 3m4i_A 171 EDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNAKDVRFLDV 242 (242)
T ss_dssp TTSEEECSCGGGSCHHHHHHHHTCTTTCCEEECCHHHHHHHHHHHHHHHHC---------------------
T ss_pred CCCEEECCCCCCCCHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 665210002022689999998449030468873168689999999998189957999999986150542789