PSIBLAST alignment of GI: 254780814 and protein with PDB id: 1kij
>gi|21465844|pdb|1KIJ|A Chain A, Crystal Structure Of The 43k Atpase Domain Of Thermus Thermophilus Gyrase B In Complex With Novobiocin Length = 390
>gi|21465845|pdb|1KIJ|B Chain B, Crystal Structure Of The 43k Atpase Domain Of Thermus Thermophilus Gyrase B In Complex With Novobiocin Length = 390
Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats.
Identities = 162/373 (43%), Positives = 229/373 (61%), Gaps = 4/373 (1%)
Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
SYDA +I++LKGL+ V+ RP+MYIG T G G HH+ E+LDNA+DE+L GYA I V L
Sbjct: 2 SYDASAIRVLKGLEGVRHRPAMYIGGT-GVEGYHHLFKEILDNAVDEALAGYATEILVRL 60
Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
N DGS TV DNGRGIP DL EEG A EVI LH+GGKF Q +YKVSGGLHGVG SVV
Sbjct: 61 NEDGSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVV 120
Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQDF 187
NALS W + + REG + ++F G + PL V G A TGT VTF P +IF F
Sbjct: 121 NALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPEIFGNLRF 180
Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
+ ++ RLRE+++L + +++ D++ + KGG+ +F L + L + P
Sbjct: 181 DPSKIRARLREVAYLVAGLKLVFQDRQHGKE--EVFLDKGGVASFAKALAEGEDLLYEKP 238
Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
I+G+ + +++ GY+ +L + N IP +DGGTHL+ +SA +R + Y +K+
Sbjct: 239 FLIRGTHGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKA 298
Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
+K+ GDD EG +V+S+K+P+P+F QTK KL++ E + V V + L
Sbjct: 299 GLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLEI 358
Query: 368 LEEHPLEAKIIVK 380
LEE+P AK + +
Sbjct: 359 LEENPRIAKAVYE 371