PSIBLAST alignment of GI: 254780814 and protein with PDB id: 1pvg
>gi|34810356|pdb|1PVG|A Chain A, Crystal Structure Of The Atpase Region Of Saccharomyces Cerevisiae Topoisomerase Ii Length = 418
>gi|34810357|pdb|1PVG|B Chain B, Crystal Structure Of The Atpase Region Of Saccharomyces Cerevisiae Topoisomerase Ii Length = 418
Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats.
Identities = 85/425 (20%), Positives = 159/425 (37%), Gaps = 48/425 (11%)
Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
MS ++ +D Q + L+ + KRP YIG + +
Sbjct: 6 MSTEPVSA---SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCXIEKNVTIV 62
Query: 40 -GLHHMIYEVLDNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAA 96
GL + E+L NA D + I V ++ + + V ++G+GIP ++H +E I
Sbjct: 63 PGLFKIFDEILVNAADNKVRDPSXKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIP 122
Query: 97 EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE---GNIYEMSFING 153
E I L ++ KV+GG +G G + N S+ L + G Y + N
Sbjct: 123 EXIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETA-DLNVGQKYVQKWENN 181
Query: 154 ILDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL---QHRLRELSFLNSSVQIS 209
P +T + T+VTF P F ++ + D L + R+ +++ + +
Sbjct: 182 XSICHPPKITSYKKGPSYTKVTFKPDLTRFGXKELDNDILGVXRRRVYDINGSVRDINVY 241
Query: 210 LIDKRSPEPREITMF--YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
L K Y +E + I R N ++A +D
Sbjct: 242 LNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVSD 301
Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
+ + F N+I GGTH++ + + ++ KK K+SV +
Sbjct: 302 ISFQQI-SFVNSIATTXGGTHVNYITDQIVKK-----ISEILKKKKKKSVKSFQIKNNXF 355
Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
++ + +P F+SQTKE+L + V+ F + + + + + + +
Sbjct: 356 IFINCLIENPAFTSQTKEQLTTR-----VKDFGSRCEIPLEYINKIXKTDLATRXFEIAD 410
Query: 388 VRDAA 392
+
Sbjct: 411 ANEEN 415