PSIBLAST alignment of GI: 254780814 and protein with PDB id: 1pvg

>gi|34810356|pdb|1PVG|A Chain A, Crystal Structure Of The Atpase Region Of Saccharomyces Cerevisiae Topoisomerase Ii Length = 418
>gi|34810357|pdb|1PVG|B Chain B, Crystal Structure Of The Atpase Region Of Saccharomyces Cerevisiae Topoisomerase Ii Length = 418
 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 85/425 (20%), Positives = 159/425 (37%), Gaps = 48/425 (11%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           MS    ++   +D  Q +  L+ + KRP  YIG  + +                      
Sbjct: 6   MSTEPVSA---SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCXIEKNVTIV 62

Query: 40  -GLHHMIYEVLDNAIDESLEGY-ADIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAA 96
            GL  +  E+L NA D  +       I V ++  + +  V ++G+GIP ++H +E I   
Sbjct: 63  PGLFKIFDEILVNAADNKVRDPSXKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIP 122

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE---GNIYEMSFING 153
           E I   L     ++    KV+GG +G G  + N  S+   L    +   G  Y   + N 
Sbjct: 123 EXIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETA-DLNVGQKYVQKWENN 181

Query: 154 ILDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTL---QHRLRELSFLNSSVQIS 209
                P  +T      + T+VTF P    F  ++ + D L   + R+ +++     + + 
Sbjct: 182 XSICHPPKITSYKKGPSYTKVTFKPDLTRFGXKELDNDILGVXRRRVYDINGSVRDINVY 241

Query: 210 LIDKRSPEPREITMF--YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267
           L  K             Y   +E      +            I   R N   ++A   +D
Sbjct: 242 LNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVSD 301

Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327
              + +  F N+I    GGTH++ +   + ++           KK K+SV     +    
Sbjct: 302 ISFQQI-SFVNSIATTXGGTHVNYITDQIVKK-----ISEILKKKKKKSVKSFQIKNNXF 355

Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387
             ++  + +P F+SQTKE+L +      V+ F +         + +    +  +  + + 
Sbjct: 356 IFINCLIENPAFTSQTKEQLTTR-----VKDFGSRCEIPLEYINKIXKTDLATRXFEIAD 410

Query: 388 VRDAA 392
             +  
Sbjct: 411 ANEEN 415