>gnl|CDD|130130 TIGR01058, parE_Gpos, DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason. Length = 637

Score = 594 bits (1534), Expect = e-170 Identities = 267/566 (47%), Positives = 377/566 (66%), Gaps = 13/566 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 S Y+AD+I+IL+GLDAV+KRP MYIG TD GLHH+++E++DN++DE L GYAD ITVT Sbjct: 3 SKYNADAIKILEGLDAVRKRPGMYIGSTDS-KGLHHLVWEIVDNSVDEVLAGYADNITVT 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L+ D S TV D+GRGIPT +H++ IS E + T LHAGGKF+Q YK +GGLHGVG SV Sbjct: 62 LHKDNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASV 121 Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VNALSSWL++ +KR+G IY+ F N G + L G+ TGT V F P IF Sbjct: 122 VNALSSWLEVTVKRDGQIYQQRFENGGKIVQSLKKIGTT-KKTGTLVHFHPDPTIFKTTQ 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 FN + ++ RL+E +FL ++++ DKR+ + FY+ G+ FV Y++ K+ L Q Sbjct: 181 FNSNIIKERLKESAFLLKKLKLTFTDKRTNKTTV--FFYENGLVDFVDYINETKETLSQV 238 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 +G ++ I +++A ++NDG EN+L F N++ K+GGTH +G + A+T I SY K Sbjct: 239 -TYFEGEKNGIEVEVAFQFNDGDSENILSFANSVKTKEGGTHENGFKLAITDVINSYARK 297 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGL 364 K+ +++ G D REG ++++S+++P+ +F QTK KL S E R+VV+ V D L Sbjct: 298 YNLLKEKDKNLEGSDIREGLSAIISVRIPEELIQFEGQTKSKLFSPEARNVVDEIVQDHL 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCSERDP 422 +LEE+ +AK+++ K + A ++AA++AR+ + +K + L GKL ++P Sbjct: 358 FFFLEENNNDAKLLIDKAIKARDAKEAAKKAREEKKSGKKPKKEKGILSGKLTPAQSKNP 417 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+A+ +L ++EI T+I +G Sbjct: 418 AKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKAKLADILKNEEINTIIFCIG 477 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGIG D F I L+Y KIIIMTDAD DGAHI+ LLLTFF+R M LI G +YI PPLY Sbjct: 478 TGIGAD-FSIKDLKYDKIIIMTDADTDGAHIQVLLLTFFYRYMRPLIELGHVYIALPPLY 536 Query: 543 GITR--GKSLQYVKDEESLEDYLINQ 566 +++ GK ++Y + LE Sbjct: 537 KLSKKDGKKVKYAWSDLELESVKKKL 562

RPSBLAST alignment for GI: 254780814 and conserved domain: TIGR01058