RPSBLAST alignment of GI: 254780814 and protein with PDBid: 1pvg

>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Length = 418

 Score =  322 bits (825), Expect = 3e-88
 Identities = 81/421 (19%), Positives = 156/421 (37%), Gaps = 51/421 (12%)

Query: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGES--------------------- 39
           M          +D  Q +  L+ + KRP  YIG  + +                      
Sbjct: 3   MVTMSTEPVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIV 62

Query: 40  -GLHHMIYEVLDNAIDESLEGYA-DIITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAA 96
            GL  +  E+L NA D  +   +   I V ++  + +  V ++G+GIP ++H +E I   
Sbjct: 63  PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIP 122

Query: 97  EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKL--RIKREGNIYEMSFIN-G 153
           E+I   L     ++    KV+GG +G G  + N  S+   L       G  Y   + N  
Sbjct: 123 EMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNM 182

Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213
            + +P  +T      + T+VTF P    F +++ + D L    R +  +N SV+   +  
Sbjct: 183 SICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVYL 242

Query: 214 RSPEPREITM-----FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268
                +          Y   +E      +            I   R N   ++A   +D 
Sbjct: 243 NGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVSDI 302

Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328
             + +  F N+I    GGTH++ +   + ++I+  +            V     +     
Sbjct: 303 SFQQI-SFVNSIATTMGGTHVNYITDQIVKKISEILXXXXXXS-----VKSFQIKNNMFI 356

Query: 329 VLSIKMPDPRFSSQTKEKLVS-------------SEVRSVVESFVNDGLSAWLEEHPLEA 375
            ++  + +P F+SQTKE+L +               +  ++++ +   +    + +   A
Sbjct: 357 FINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMKTDLATRMFEIADANEENA 416

Query: 376 K 376
            
Sbjct: 417 L 417