RPSBLAST alignment of GI: 254780814 and protein with PDBid: 1s16

>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Length = 390
 Score =  367 bits (942), Expect = e-102
 Identities = 136/398 (34%), Positives = 217/398 (54%), Gaps = 11/398 (2%)

Query: 7   NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
             +Y+AD+I++L GL+ V++RP MY   T      +H+  EV+DN++DE+L G+A  + V
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMYTDTT----RPNHLGQEVIDNSVDEALAGHAKRVDV 57

Query: 67  TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            L+ D S  V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58  ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNP-LVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
           VVNALS  +++ ++R+G +Y ++F NG       VV      +TGT V F P    F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177

Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
            F+   L H L+  + L   V+I+  D+ +   +     Y+ G+  +++        L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR--WCYQDGLNDYLAEAVNGLPTLPE 235

Query: 246 SPIRIQGSRDNISIDLAMRWND-GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
            P     + D  ++D A+ W   G       + N IP   GGTH++GLR  L   +  + 
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
           E           +  +D  +    VLS+KM DP+F+ QTKE+L S +  + V   V D  
Sbjct: 296 EYR-NILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
             WL ++   A+++ +  + ++  R   R A+ + R+K
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQRR--MRAAKKVVRKK 390