RPSBLAST alignment of GI: 254780814 and protein with PDBid: 1s16
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Length = 390
Score = 367 bits (942), Expect = e-102
Identities = 136/398 (34%), Positives = 217/398 (54%), Gaps = 11/398 (2%)
Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66
+Y+AD+I++L GL+ V++RP MY T +H+ EV+DN++DE+L G+A + V
Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT----RPNHLGQEVIDNSVDEALAGHAKRVDV 57
Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
L+ D S V D+GRG+P D+H EEG+ A E+I+ RLHAGGKF+ K+Y+ SGGLHGVG+S
Sbjct: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117
Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNP-LVVTGSAGNDTGTEVTFLPSSDIFSVQ 185
VVNALS +++ ++R+G +Y ++F NG VV +TGT V F P F
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177
Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245
F+ L H L+ + L V+I+ D+ + + Y+ G+ +++ L +
Sbjct: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR--WCYQDGLNDYLAEAVNGLPTLPE 235
Query: 246 SPIRIQGSRDNISIDLAMRWND-GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304
P + D ++D A+ W G + N IP GGTH++GLR L + +
Sbjct: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295
Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364
E + +D + VLS+KM DP+F+ QTKE+L S + + V V D
Sbjct: 296 EYR-NILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354
Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402
WL ++ A+++ + + ++ R R A+ + R+K
Sbjct: 355 ILWLNQNVQAAELLAEMAISSAQRR--MRAAKKVVRKK 390