RPSBLAST alignment of GI: 254780814 and protein with PDBid: 2zbk

>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530

 Score =  136 bits (343), Expect = 2e-32
 Identities = 61/569 (10%), Positives = 135/569 (23%), Gaps = 80/569 (14%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE-SLEGYADIITVTLNM 70
            +    L   +  K+ P +        + L+  + E+++N++D   + G    I +T+++
Sbjct: 4   KEKFTSLSPAEFFKRNPELAGFPNPARA-LYQTVRELIENSLDATDVHGILPNIKITIDL 62

Query: 71  DG------SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
                      V DNG GIP                 R+    K+  +    + G++G+G
Sbjct: 63  IDDARQIYKVNVVDNGIGIPPQ--------EVPNAFGRVLYSSKYVNRQ---TRGMYGLG 111

Query: 125 VSVVNALSS-------WLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177
           V      S         ++        IY       I  N  ++      +         
Sbjct: 112 VKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTS 171

Query: 178 SSDIFSVQDF-NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            +             +   ++    +    +    D                        
Sbjct: 172 VAISIPGDWPKAKSRIYEYIKRTYIITPYAEFIFKDPEG--------------NVTYYPR 217

Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
             +K P     ++      +      +  N      +  F  N  Q  G           
Sbjct: 218 LTNKIPKPPQEVKPHPYGVDREEIKILINNLKRDYTIKEFLVNEFQSIG----------- 266

Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
                  +E +      K   + ++       ++     D  F S + + L       + 
Sbjct: 267 DTTADKILELAGLKPNKKVKNLTEEEIT---RLVETFKKDEDFRSPSADSLSVIGEDLIE 323

Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
                     +      + K                          GV    S+P     
Sbjct: 324 LGLKKIFNPDFAASITRKPKAYQGHPFI---------------VEAGVAFGGSIPVGEEP 368

Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
              R   K  L   E         +    +   I   + +++ +      K+        
Sbjct: 369 IVLRYANKIPLIYDEKSDVIWKVVEELDWKRYGIESDQYQMVVMVHLCSTKIPYKSAGKE 428

Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
            I              N  +  K  +M  A     ++         ++           +
Sbjct: 429 SIAE----------VENIEKEIKNALMEVARKLKQYLSEKRKEQEAKKKLLAYLKYIPEV 478

Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLIN 565
            +     +  G      K +  + + L  
Sbjct: 479 SRSLATFLASGNKELVSKYQNEISEGLFK 507