RPSBLAST alignment of GI: 254780814 and protein with PDBid: 3k9f

>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* Length = 268

 Score =  199 bits (508), Expect = 1e-51
 Identities = 91/239 (38%), Positives = 129/239 (53%), Gaps = 20/239 (8%)

Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455
            D    K   D   L GKL     ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRG
Sbjct: 19  DDDKHMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRG 78

Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515
           K++N  +A+   +L ++EI T+I  +G G+G D F I    Y KIIIMTDAD DGAHI+T
Sbjct: 79  KVINTAKAKMADILKNEEINTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQT 137

Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED-------------- 561
           LLLTFF+R M  L+  G +YI  PPLY +++GK  +        +               
Sbjct: 138 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 197

Query: 562 YLINQSLSE--EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY---PNHDKTFIEQ 615
               + L E    +L+  +    ++  +R  I+D  + ++ +           + +IE 
Sbjct: 198 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIED 256