RPSBLAST alignment of GI: 254780814 and protein with PDBid: 3nuh

>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} Length = 420

 Score =  466 bits (1199), Expect = e-131
 Identities = 189/420 (45%), Positives = 261/420 (62%), Gaps = 8/420 (1%)

Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451
           +  AR++TRRKG LD+A LPGKLADC ERDP  SEL+LVEGDSAGGSAKQGR+R+NQAIL
Sbjct: 1   SNAAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAIL 60

Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511
           PL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+
Sbjct: 61  PLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGS 120

Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571
           HIRTLLLTFF+RQMP ++  G +YI +PPLY + +GK  QY+KD+E+++ Y I+ +L   
Sbjct: 121 HIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGA 180

Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQE 629
                 S   ++   L   + +     K+I      + K  +++ +          SD++
Sbjct: 181 TLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQ 240

Query: 630 INVSLASKLANRLNFIAEKSEKSWHGSINNSD-----ILVKRIARGVQEQFVLEGSSIFS 684
                 + L + LN   +   +       N++      +V+    GV   + L+   I  
Sbjct: 241 TVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITG 300

Query: 685 FGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGE 744
              +       ++         +     +  +      LD +    R+G+S+QRYKGLGE
Sbjct: 301 GEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGE 360

Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803
           MN  QLWETT++P++R +LRV + DA  AD LF+ LMGD VEPRR FI+EN+L +A +DI
Sbjct: 361 MNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 420