BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B
[Candidatus Liberibacter asiaticus str. psy62]
(803 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
Length = 803
Score = 1643 bits (4254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 803/803 (100%), Positives = 803/803 (100%)
Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY
Sbjct: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60
Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL
Sbjct: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120
Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD
Sbjct: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180
Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK
Sbjct: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240
Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI
Sbjct: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300
Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV
Sbjct: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360
Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER
Sbjct: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420
Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA
Sbjct: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480
Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP
Sbjct: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540
Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL
Sbjct: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600
Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS
Sbjct: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660
Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC
Sbjct: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720
Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL
Sbjct: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780
Query: 781 MGDEVEPRREFIQENSLPSALDI 803
MGDEVEPRREFIQENSLPSALDI
Sbjct: 781 MGDEVEPRREFIQENSLPSALDI 803
>gi|254780222|ref|YP_003064635.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus
str. psy62]
Length = 686
Score = 402 bits (1033), Expect = e-113, Method: Compositional matrix adjust.
Identities = 257/655 (39%), Positives = 374/655 (57%), Gaps = 33/655 (5%)
Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
+YDA SI+IL+GL+ V+ RP MYIG TD E LHH+ EV+DNA+DE + GYA++I V+L
Sbjct: 43 NYDASSIRILEGLEPVRMRPGMYIGGTD-EKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
Query: 69 NMDGSCTVSDNGRGIPTDLH-KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
+ +G TV DNGRGIP + H K S E+I+T LHAGGKF+ +Y++SGGLHGVG+SV
Sbjct: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-D 186
VNALS L + + R+ I+ F GI +PL N GT +TF P IF +
Sbjct: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
Query: 187 FNYDTLQHRLRELSFLNSSVQISL-IDKRSPE----PREITMFYKGGIEAFVSYLDRHKK 241
F+ L + ++L+ V+ DK E P + ++ GG++ ++ +
Sbjct: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ-TKLENR 280
Query: 242 PLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
L+ S I +G+ +++ A+ W + E + + N I +GGTH SGLR AL
Sbjct: 281 SLISSEIFTGKTEKKGTHRG-TVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVAL 338
Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
TR I Y E K S+I DD +LS+ + +P F+ QTK KLVS + + V
Sbjct: 339 TRGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
E+ + D +L ++P+EA +++ V++ S R R+ R++ R+ + + LPGKLAD
Sbjct: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL-RLPGKLAD 455
Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
CS+ +ELF+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV A +K+ ++Q+I
Sbjct: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
L+ ALG + + LRY K+IIMTDADVDGAHI +LLLTFF+++M LI L++
Sbjct: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
I PPL+ IT+G Y DEE Q + EE + K IS+ F
Sbjct: 575 ISPPLFRITQGTKSVYAHDEEH------KQKILEEFKKHGKGKIEISR-----FKGLGEM 623
Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKS 649
+ +K+ + +K + + I+ N D + IN + +K R FI E++
Sbjct: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
Score = 55.5 bits (132), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDASQADDLFSRLMGDEV 785
G+ I + R+KGLGEM ASQL ET ++ + R+LLRV+I D ++LMG +
Sbjct: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
Query: 786 EPRREFIQENS 796
+ R +FIQE +
Sbjct: 668 DERFKFIQERA 678
>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1162
Score = 26.9 bits (58), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ---SLSEEIE 573
GF +I+P + G+++Q V E L+DYL++ +SEEI+
Sbjct: 772 GFPLLIRPSY--VLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIK 814
>gi|254780779|ref|YP_003065192.1| 30S ribosomal protein S2 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 278
Score = 26.6 bits (57), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKK----VLDAS----MVRDAARRARDLTRRKG 403
+R ++ES V G +L +E I ++ ++D S M++ A + D R G
Sbjct: 8 IRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGG 67
Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG--KILNVE 461
+ + + +DC K+S + V GG ++ +Q+I LR ++LN E
Sbjct: 68 RILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKT-VSQSIQKLRDLEELLNKE 126
Query: 462 RARFDK 467
F K
Sbjct: 127 NQGFTK 132
>gi|254780140|ref|YP_003064553.1| putative ABC transporter, substrate-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 452
Score = 26.6 bits (57), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266
++S +++ P+ + IRI GS D +S D ++R+N
Sbjct: 27 WLSRSNQYDGPMAEVIIRIPGSVDGLSTDSSVRFN 61
>gi|254780444|ref|YP_003064857.1| bacteriophage repressor protein C1 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 223
Score = 26.2 bits (56), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ--DFNYDTLQ------HRLRELSFLNS 204
G D+ + TG+ N G P + I+++Q D + T +R ++ LNS
Sbjct: 102 GFFDSGVFPTGNKWNTVGVPEIRSPHNGIYAIQTQDTRHKTQDTSMLPLYRKGDILILNS 161
Query: 205 SVQISLIDKRSPEPR 219
++Q++ D+ +PR
Sbjct: 162 AIQVNCGDRLLIKPR 176
>gi|254780927|ref|YP_003065340.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 430
Score = 26.2 bits (56), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 682 IFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732
+ S RI +RIE + + GD I SLL T+F + R+
Sbjct: 230 VTSLSGTRHRILPDRIEAGTYAMAVAMTGGDVILKMTDSSLLKTVFKVMRQ 280
>gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus Liberibacter asiaticus str. psy62]
Length = 343
Score = 26.2 bits (56), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532
+IG L+ LGT G D F + + ++ ++ R +L + PS I +
Sbjct: 18 KIGVLLVNLGTPDGHDFFSLRRYLREFLLDKRVVELPSWQWRPILFGYILNFRPSKIKHA 77
Query: 533 FLYI 536
+ I
Sbjct: 78 YAKI 81
>gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 606
Score = 25.8 bits (55), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345
T LR+A+ + + SF + + + +G R GF +L +++ R +
Sbjct: 313 ATQFENLRTAINK--LRLNDASFSFELENSTALGFGFRCGFLGLLHLEIIQERLEREFSL 370
Query: 346 KLVSSEVRSVVESFVNDG 363
L+ + V E +++DG
Sbjct: 371 NLIGTSPSVVYELYMHDG 388
>gi|254780226|ref|YP_003064639.1| translation-associated GTPase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 367
Score = 25.8 bits (55), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 9 SYDADSIQILKGLDAVKKRPSMYI 32
S D+D+I I K L+ + +P +YI
Sbjct: 185 SLDSDAIPIFKSLNLLTAKPILYI 208
>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 798
Score = 25.0 bits (53), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 84/202 (41%), Gaps = 21/202 (10%)
Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577
++FF + ++H + + ++ +Y E L LI+ S + + L C+
Sbjct: 1 MSFFSENLEKVLHQALV---------LANERNHEYATLEHLLL-ALIDDSDAAIVMLSCN 50
Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS-GVFNCESD-------QE 629
+ KN+L N+ID+ +KL F T Q V+ V + +S
Sbjct: 51 VDLKVLKNNLLNYIDNDSS-NKLKNGFRVECKPTSSFQRVVQRAVLHVQSTGRGIVTGAN 109
Query: 630 INVSLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQEQFVLEGSSIFSFGS 687
I V+L S+ + + ++ E + + ++N + I ++ Q + ++GSS S G
Sbjct: 110 ILVALFSEPDSHATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLNVDGSSAGSDGE 169
Query: 688 KYKRIFSNRIEENYLTILSLIC 709
+ + + + N LS C
Sbjct: 170 GFVNDYQAKTDLNLFPALSAYC 191
>gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus
Liberibacter asiaticus str. psy62]
Length = 737
Score = 24.3 bits (51), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 20 GLDAVKKRPSMYIGDTDGESGLHHMIYEVL--DNAIDESLEGYADIITVTLNMDGSCTVS 77
G + KKRP++ +GD L E++ D I G A + + M +
Sbjct: 227 GENIAKKRPTVQVGDPFTGKCLLEACLELMNTDAVIAIQDMGAAGLTCSAIEMG-----N 281
Query: 78 DNGRGIPTDLHK----EEGISAAEVIMTR 102
GI DL K EEG++A E++++
Sbjct: 282 QGNLGITLDLDKVPTCEEGMTAYEMMLSE 310
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.135 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,880
Number of Sequences: 1233
Number of extensions: 21929
Number of successful extensions: 82
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 17
length of query: 803
length of database: 328,796
effective HSP length: 81
effective length of query: 722
effective length of database: 228,923
effective search space: 165282406
effective search space used: 165282406
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 42 (20.8 bits)