Query         gi|254780815|ref|YP_003065228.1| hypothetical protein CLIBASIA_03530 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 232
No_of_seqs    133 out of 925
Neff          7.9 
Searched_HMMs 23785
Date          Mon May 30 12:52:53 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780815.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2cw9_A Translocase of inner mi 100.0 1.2E-38 5.2E-43  264.1  17.1  152   80-231    34-188 (194)
  2 2fxt_A Import inner membrane t 100.0 2.1E-36   9E-41  249.8  14.5  149   82-230    35-191 (192)
  3 3cu3_A Domain of unknown funct  92.3    0.32 1.4E-05   26.3   6.1  104  106-230    17-135 (172)
  4 3k7c_A Putative NTF2-like tran  88.7     1.2 4.9E-05   22.7   7.5   94  111-226    13-112 (114)
  5 2r4i_A Uncharacterized protein  86.0     1.7   7E-05   21.7   8.8  103  108-230     9-119 (123)
  6 3ksp_A Calcium/calmodulin-depe  83.8     2.1 8.8E-05   21.1   6.0  104  108-230    12-123 (129)
  7 3h3h_A Uncharacterized snoal-l  83.7     2.1 8.9E-05   21.1   6.8   29  106-134     9-37  (122)
  8 3dmc_A NTF2-like protein; stru  82.2    0.38 1.6E-05   25.8   1.3   33  103-135    10-42  (134)
  9 2gxf_A Hypothetical protein YY  79.9     2.9 0.00012   20.2   9.4  101  107-227     5-118 (142)
 10 2f86_B Hypothetical protein K1  77.4     1.5 6.4E-05   22.0   3.1   27  108-134    15-41  (143)
 11 3bb9_A Putative orphan protein  76.3     3.7 0.00015   19.6   7.2   28  107-134    32-59  (148)
 12 2owp_A Hypothetical protein BX  76.2     3.7 0.00016   19.5  10.6   31  103-133     9-39  (129)
 13 3ehc_A Snoal-like polyketide c  74.3     3.1 0.00013   20.0   4.0   29  106-134     4-32  (128)
 14 3hx8_A MLR2180 protein, putati  70.0     5.2 0.00022   18.6  10.9  102  106-227     7-120 (129)
 15 2ux0_A Calcium-calmodulin depe  69.6     5.3 0.00022   18.6   9.5   30  106-135    14-43  (143)
 16 2gey_A ACLR protein; alpha+bet  65.7     1.5 6.4E-05   22.0   0.8   29  106-134     5-33  (158)
 17 3gzr_A Uncharacterized protein  63.6     6.9 0.00029   17.8   9.4  104  107-229     8-126 (146)
 18 3ebt_A Uncharacterized NTF2-li  60.3     7.9 0.00033   17.4   8.9   28  107-134     5-32  (132)
 19 3fh1_A Uncharacterized NTF2-li  60.1     2.7 0.00011   20.5   1.3   28  107-134    19-46  (129)
 20 2gex_A SNOL; alpha+beta barrel  57.9       2 8.6E-05   21.2   0.4   27  108-134     7-33  (152)
 21 3f40_A Uncharacterized NTF2-li  56.5     2.7 0.00011   20.4   0.8   27  108-134     9-35  (114)
 22 1s5a_A Hypothetical protein YE  56.2     4.4 0.00018   19.1   1.8   31  104-134     9-39  (150)
 23 2k54_A Protein ATU0742; protei  55.5     4.2 0.00018   19.2   1.7   28  107-134     5-32  (123)
 24 3en8_A Uncharacterized NTF-2 l  55.4     3.1 0.00013   20.1   0.9   30  105-134     5-34  (128)
 25 3g0k_A Putative membrane prote  54.1      10 0.00042   16.8   4.6   25  111-135    34-58  (148)
 26 3h51_A Putative calcium/calmod  50.4      11 0.00048   16.4  10.6  101  107-228    22-135 (156)
 27 3g8z_A Protein of unknown func  50.0     3.6 0.00015   19.6   0.6   27  108-134    23-49  (148)
 28 1nww_A Limonene-1,2-epoxide hy  47.7     6.4 0.00027   18.0   1.6   27  109-135    26-52  (149)
 29 3fgy_A Uncharacterized NTF2-li  46.2     5.2 0.00022   18.6   0.9   28  108-135     8-35  (135)
 30 3ec9_A Uncharacterized NTF2-li  45.0     4.7  0.0002   18.9   0.5   28  107-134    14-41  (140)
 31 3cnx_A Uncharacterized protein  44.4      14  0.0006   15.8  13.6  109  104-229    11-152 (170)
 32 3d9r_A Ketosteroid isomerase-l  43.9      14 0.00061   15.8  10.9  102  108-228    14-128 (135)
 33 3f14_A Uncharacterized NTF2-li  42.5     2.3 9.7E-05   20.8  -1.4   27  108-134     3-29  (112)
 34 2bng_A MB2760; epoxide hydrola  42.4     9.2 0.00038   17.0   1.7   29  107-135    17-45  (149)
 35 3f7x_A Putative polyketide cyc  42.0     5.7 0.00024   18.4   0.6   25  110-134    25-49  (151)
 36 3i0y_A Putative polyketide cyc  41.8     6.7 0.00028   17.9   0.9   30  105-134     8-37  (140)
 37 3k0z_A Putative polyketide cyc  41.7     7.3  0.0003   17.7   1.1   25  110-134    39-63  (159)
 38 3f9s_A Putative polyketide cyc  40.7      16 0.00068   15.5   6.4   27  108-134     9-36  (146)
 39 1ohp_A Steroid delta-isomerase  40.4     9.2 0.00039   17.0   1.4   28  107-134     7-34  (125)
 40 3ff2_A Uncharacterized cystati  38.2       7 0.00029   17.8   0.5   28  108-135     5-32  (117)
 41 3dm8_A Uncharacterized protein  38.2     5.6 0.00023   18.4   0.0   27  108-134     7-33  (143)
 42 2rcd_A Uncharacterized protein  37.6      18 0.00076   15.2  12.2   37   97-133     6-42  (129)
 43 3fsd_A NTF2-like protein of un  35.6      19 0.00081   15.0   9.3   23  112-134    21-43  (134)
 44 2f99_A Aklanonic acid methyl e  35.2     4.5 0.00019   19.0  -0.8   29  107-135    13-41  (153)
 45 3gzb_A Putative snoal-like pol  35.1      16 0.00066   15.5   1.9   25  110-134    25-49  (154)
 46 2l16_A SEC-independent protein  35.0      16 0.00069   15.4   2.0   16    9-24      6-21  (78)
 47 1oh0_A Steroid delta-isomerase  32.7      12 0.00049   16.4   0.9   28  107-134     9-36  (131)
 48 1tuh_A BAL32A, hypothetical pr  30.5      23 0.00098   14.4   6.7   27  108-134    32-58  (156)
 49 3nrl_A Uncharacterized protein  30.2      13 0.00056   16.0   0.9   26  204-231    39-64  (81)
 50 3f8h_A Putative polyketide cyc  30.0     8.3 0.00035   17.3  -0.2   27  108-134    21-47  (150)
 51 1rzh_H Reaction center protein  29.8      22 0.00093   14.6   2.0   37  189-228   146-183 (260)
 52 1sjw_A Nogalonic acid methyl e  27.2     4.9 0.00021   18.8  -1.7   27  108-134     5-31  (144)
 53 2a15_A Hypothetical protein RV  26.3      16 0.00067   15.5   0.8   27  108-134    10-36  (139)
 54 2knc_A Integrin alpha-IIB; tra  26.1      28  0.0012   14.0   3.3   17   11-27     12-28  (54)
 55 2k1k_A Ephrin type-A receptor   24.5      30  0.0013   13.8   2.9   27    2-28      4-36  (38)
 56 3ke7_A Putative ketosteroid is  24.5      30  0.0013   13.8   8.7   25  110-134    19-43  (134)
 57 1puo_A Major allergen I polype  24.4      30  0.0013   13.8   3.2   33  106-140    37-69  (170)
 58 1z1s_A Hypothetical protein PA  21.7      31  0.0013   13.7   1.5   29  107-135    25-53  (163)
 59 1zkr_A Major allergen I polype  21.2      35  0.0015   13.4   2.8   32  106-139   108-139 (153)
 60 3f7s_A Uncharacterized NTF2-li  20.9      35  0.0015   13.3  11.9   28  106-133     9-36  (142)

No 1  
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=100.00  E-value=1.2e-38  Score=264.08  Aligned_cols=152  Identities=17%  Similarity=0.394  Sum_probs=147.3

Q ss_pred             CCCHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             542024577776612676798999999999-9999999984276789997318999999998777644349820236620
Q gi|254780815|r   80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARN-SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG  158 (232)
Q Consensus        80 ~~~~~~~~~~~i~~~~~~Fd~~~Fl~gAk~-af~~I~~A~~~gD~~~L~~lls~~~~~~f~~~i~~r~~~~~~~~~~~v~  158 (232)
                      ..++.+.+++.|+.+||+||.++|++|||. +|++|++||.+||++.|++|||+++|+.|+.+|++|+.+|.+++.++++
T Consensus        34 ~~~e~~~~l~~ik~~Dp~Fd~~~Fl~~ak~~a~~~I~~A~~~gD~~~Lk~l~se~~~~~f~~~i~~r~~~g~~~~~~il~  113 (194)
T 2cw9_A           34 SKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILD  113 (194)
T ss_dssp             HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHHHHTCHHHHHHHBCHHHHHHHHHHHHHHHHTTCEECCEEEE
T ss_pred             CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             88889999999997689999899999999999999999998488999988629999999999999999769800478840


Q ss_pred             HHHHHHHHHCCCCCEEEEEEEEEEEEEEEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCC--EEEEEEECC
Q ss_conf             0012454211346456999999888777667689968057657848999999999618989986--689576327
Q gi|254780815|r  159 IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN--WVLISTKLG  231 (232)
Q Consensus       159 i~~~~i~~~~~~~~~~~itV~F~~~~i~~~~d~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~--W~L~~iq~~  231 (232)
                      |.+++|.+++..++.++++|+|.++|++|++|++|+||+|+++++.+++|+|||+|++++.+||  |+|++||++
T Consensus       114 i~~~eI~~a~~~~~~~~i~V~F~~~qi~~~~D~~G~VveGd~~~i~~~~e~W~F~R~~~~~~pn~~W~L~ei~~~  188 (194)
T 2cw9_A          114 IDNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRLLDISAS  188 (194)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECEEECTTSCEEEECTTCCEEEEEEEEEEECTTCSCGGGCEEEEEEEEE
T ss_pred             CCCCEEEEEEEECCCEEEEEEEEEEEHHEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEHHC
T ss_conf             143223688850883299999999920117779998842898873587899999973777898998899975201


No 2  
>2fxt_A Import inner membrane translocase subunit TIM44; mitochondrial translocase, protein transport; 3.20A {Saccharomyces cerevisiae} SCOP: d.17.4.13
Probab=100.00  E-value=2.1e-36  Score=249.84  Aligned_cols=149  Identities=13%  Similarity=0.225  Sum_probs=141.7

Q ss_pred             CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-HHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEEEHH
Q ss_conf             2024577776612676798999999999999-999998427678999731899999999877764434982023662000
Q gi|254780815|r   82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID  160 (232)
Q Consensus        82 ~~~~~~~~~i~~~~~~Fd~~~Fl~gAk~af~-~I~~A~~~gD~~~L~~lls~~~~~~f~~~i~~r~~~~~~~~~~~v~i~  160 (232)
                      ++.+.+++.++++||+||..+|++|||.+|+ +|++||++||++.||+|||+++|+.|+.+|++|+++|.+++.++++|.
T Consensus        35 te~~~~l~~ik~~Dp~Fd~~~Fl~~ak~~~~p~Il~Af~~gD~~~Lk~lls~~vy~~f~~~I~~r~~~g~~~~~~~l~I~  114 (192)
T 2fxt_A           35 TESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGRILDIR  114 (192)
T ss_dssp             CCSHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHBCHHHHHHHHHHHHHHHHTTEECCEEECCCE
T ss_pred             CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             58999999999878999989999999999999999999837899999870699999999999999987985234650322


Q ss_pred             HHHHHHHCCC--CCEEEEEEEEEEEEEEEEEC-CCCCEECCCCCCCEEEEEEEEEEECCCCCCCC----EEEEEEEC
Q ss_conf             1245421134--64569999998887776676-89968057657848999999999618989986----68957632
Q gi|254780815|r  161 DMKIINASIE--ENTVYITIRIVGQFISASYD-KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLISTKL  230 (232)
Q Consensus       161 ~~~i~~~~~~--~~~~~itV~F~~~~i~~~~d-~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~----W~L~~iq~  230 (232)
                      +++|.+++..  ++.+.++|+|.++||+|++| ++|+||+|+++++..++|+|||+|++++.|||    |+|++.+-
T Consensus       115 ~~~I~~a~~~~~~~~~~itV~F~a~qi~~~~~dk~G~IIeGd~~~i~~v~d~WtF~R~~~~~~pn~~~~W~LiE~~r  191 (192)
T 2fxt_A          115 GVEIVSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEIAAGDEANILMSSYAMVFTRDPEQIDDDETEGWKILEFVR  191 (192)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEEECEEECCEETTTBTTSSCSCCCCCCEEEEEEEECCSSSCTTSSSTTCEEEEEEC
T ss_pred             CEEEEEEEEECCCCEEEEEEEEEEEEEEEEECCCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEEC
T ss_conf             11789999744887089999999999999971788866538988636999999999867568988989989998306


No 3  
>3cu3_A Domain of unknown function with A cystatin-like fold; ZP_00107529.1, structural genomics, joint center for structural genomics; 2.00A {Nostoc punctiforme pcc 73102} SCOP: d.17.4.28
Probab=92.25  E-value=0.32  Score=26.29  Aligned_cols=104  Identities=5%  Similarity=0.079  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHCHHH------------HHHHHHHHHHHHHCC---CCCEEEEEEHHHHHHHHHCCC
Q ss_conf             99999999999984276789997318999------------999998777644349---820236620001245421134
Q gi|254780815|r  106 EARNSYEAIVDSFFEGKVHAIEKLVDSRV------------YQDFNDSLSTRKSNE---KNVKSSLVGIDDMKIINASIE  170 (232)
Q Consensus       106 gAk~af~~I~~A~~~gD~~~L~~lls~~~------------~~~f~~~i~~r~~~~---~~~~~~~v~i~~~~i~~~~~~  170 (232)
                      ..+..|....+||+++|.+.+..+.+++.            .+.+.+.+..+-...   .........+.       ...
T Consensus        17 aI~al~~~~~~A~~~~D~d~~~~lfa~D~~~~~~~g~~~~G~e~i~~~~~~~~~~~~~~~~~~~~~~~i~-------~~~   89 (172)
T 3cu3_A           17 AIRAFHRQMIDAWNRGSGEGFAAPFSETADFITFEGTHLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVR-------FVN   89 (172)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCCEEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEE-------EEE
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEE-------EEC
T ss_conf             9999999999999869989998763146400146754113688999999998602666734897303788-------865


Q ss_pred             CCEEEEEEEEEEEEEEEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEC
Q ss_conf             645699999988877766768996805765784899999999961898998668957632
Q gi|254780815|r  171 ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL  230 (232)
Q Consensus       171 ~~~~~itV~F~~~~i~~~~d~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~W~L~~iq~  230 (232)
                      ++.+.+...+...    ...      .+.+.........++|.|.    +..|+++..+.
T Consensus        90 ~D~A~~~~~~~~~----~~~------~~~~~~~~~~r~t~Vl~R~----dG~WrI~~~H~  135 (172)
T 3cu3_A           90 SQLALMLVVIRVI----LPG------QTETSASRDSLPLYVVTKG----DEGWQIEGLLN  135 (172)
T ss_dssp             TTEEEEEEEEEEE----CTT------CSSBCGGGCBCCEEEEEEE----TTEEEEEEEEC
T ss_pred             CCEEEEEEEEEEE----EEC------CCCCCCEEEEEEEEEEEEE----CCEEEEEEEEC
T ss_conf             9579999999999----707------9988733779999999982----99899999863


No 4  
>3k7c_A Putative NTF2-like transpeptidase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PGE; 2.00A {Campylobacter jejuni}
Probab=88.73  E-value=1.2  Score=22.73  Aligned_cols=94  Identities=10%  Similarity=0.283  Sum_probs=51.5

Q ss_pred             HHHHHHHHHCCCHHHHHHHHC------HHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCCEEEEEEEEEEEE
Q ss_conf             999999984276789997318------99999999877764434982023662000124542113464569999998887
Q gi|254780815|r  111 YEAIVDSFFEGKVHAIEKLVD------SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF  184 (232)
Q Consensus       111 f~~I~~A~~~gD~~~L~~lls------~~~~~~f~~~i~~r~~~~~~~~~~~v~i~~~~i~~~~~~~~~~~itV~F~~~~  184 (232)
                      .+...++..+||.+....|++      +.+-+.+...+...........-+..+|.+.++.++..+++.+.|+|.++.  
T Consensus        13 ak~f~~~l~~GD~e~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ggik~v~i~~~~~~~~~A~V~~~~~y--   90 (114)
T 3k7c_A           13 AKNFTKDLYSGDTKSVMSYIDLSEAKSDEEKTFVSDKITQVVAENAAKAKRMGGVKDIQIEEKTINKDSAKIRVLVLF--   90 (114)
T ss_dssp             HHHHHHHHTTTCHHHHHHTBCCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEEECSSEEEEEEEEEE--
T ss_pred             HHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEEE--
T ss_conf             999999998289999985457765567789999999999988877766886289407999997732888999999997--


Q ss_pred             EEEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCEEEE
Q ss_conf             776676899680576578489999999996189899866895
Q gi|254780815|r  185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI  226 (232)
Q Consensus       185 i~~~~d~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~W~L~  226 (232)
                                   ||.   ..-.+.|.+.|    .+..|++.
T Consensus        91 -------------~dg---t~~~~~v~lvk----~dg~Wkv~  112 (114)
T 3k7c_A           91 -------------NND---NNQSSNVFLAK----KDRKWLVL  112 (114)
T ss_dssp             -------------TTS---CEEEEEEEEEE----SSSSEEEC
T ss_pred             -------------CCC---CCEEEEEEEEE----ECCEEEEE
T ss_conf             -------------899---82688899899----99999998


No 5  
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15
Probab=86.03  E-value=1.7  Score=21.75  Aligned_cols=103  Identities=13%  Similarity=0.114  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHCHHHHH--------HHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCCEEEEEEE
Q ss_conf             99999999998427678999731899999--------9998777644349820236620001245421134645699999
Q gi|254780815|r  108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQ--------DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR  179 (232)
Q Consensus       108 k~af~~I~~A~~~gD~~~L~~lls~~~~~--------~f~~~i~~r~~~~~~~~~~~v~i~~~~i~~~~~~~~~~~itV~  179 (232)
                      .+......+|+.+||.+.|..|++|++.-        .-...++.......  ........+   ..+...++.+.++.+
T Consensus         9 ~~l~~~~~~A~~~~D~~~l~~l~a~d~~~~~~~G~~~~~~~~i~~~~~~~~--~~~~~~~~~---~~v~~~gd~Av~~~~   83 (123)
T 2r4i_A            9 LDCEKKLLTAIQNNDVESLEVLLHDDLLFIIPSGETVTKETDIAAYSSGKI--ALRAVVPSD---YIIRIIHDTVVVSVN   83 (123)
T ss_dssp             THHHHHHHHHHHHTCHHHHHHHEEEEEEEECTTSCEECHHHHHHHHHTTCE--EEEEEEEEE---EEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCEEEEHHHHHHHHHCCCC--CCCEEEEEE---EEEEEECCEEEEEEE
T ss_conf             999999999998599999997468876999279909616999999864898--863689865---689983667899999


Q ss_pred             EEEEEEEEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEC
Q ss_conf             988877766768996805765784899999999961898998668957632
Q gi|254780815|r  180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL  230 (232)
Q Consensus       180 F~~~~i~~~~d~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~W~L~~iq~  230 (232)
                      +.....     .+|....      ...+..-+|.|.    +..|+|+.-+.
T Consensus        84 ~~~~~~-----~~g~~~~------~~~r~t~V~~k~----~G~Wkiv~~h~  119 (123)
T 2r4i_A           84 IEIKGE-----YMEHTLD------NTFRYLRVWKLF----DGNWKVIAGSC  119 (123)
T ss_dssp             EEEEEE-----ETTEEEE------EEEEEEEEEEEE----TTEEEEEEEEE
T ss_pred             EEEEEE-----CCCCCEE------EEEEEEEEEEEE----CCEEEEEEEEE
T ss_conf             999983-----3997306------789999999999----99999999984


No 6  
>3ksp_A Calcium/calmodulin-dependent kinase II association domain; structural genomics, joint center for structural genomics, JCSG; HET: MSE NHE; 2.59A {Exiguobacterium sibiricum 255-15}
Probab=83.78  E-value=2.1  Score=21.11  Aligned_cols=104  Identities=14%  Similarity=0.172  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHCHHHHH--------HHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCCEEEEEEE
Q ss_conf             99999999998427678999731899999--------9998777644349820236620001245421134645699999
Q gi|254780815|r  108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQ--------DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR  179 (232)
Q Consensus       108 k~af~~I~~A~~~gD~~~L~~lls~~~~~--------~f~~~i~~r~~~~~~~~~~~v~i~~~~i~~~~~~~~~~~itV~  179 (232)
                      +..+.....|+.+||.+.|+.|+++++.-        .-.+.|+.....+.. .....   ......+...++.+.++..
T Consensus        12 ~~l~~~~~~a~~~~d~~~l~~lladdf~~i~~sG~~~~k~~~l~~~~~~~~~-~~~~~---~~~~~~v~~~gd~Avv~~~   87 (129)
T 3ksp_A           12 QTLLSERHAYLMEGNREAMHQLLSSDFSFIDGQGRQFDAETYLDHYVDPDQI-QWSNQ---ISESMVVEVFETTALVQEI   87 (129)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHEEEEEEEECTTCCEECHHHHHHHHSCTTTE-EEEEE---EEEEEEEEECSSEEEEEEE
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCC-CCCEE---CCCCEEEEEECCEEEEEEE
T ss_conf             9999999999983899999976086659996999462348899976515764-30000---1221026885251799999


Q ss_pred             EEEEEEEEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEC
Q ss_conf             988877766768996805765784899999999961898998668957632
Q gi|254780815|r  180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL  230 (232)
Q Consensus       180 F~~~~i~~~~d~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~W~L~~iq~  230 (232)
                      ......   .  .|....+    ....+.+|.-      .+..|+++.-|.
T Consensus        88 ~~~~~~---~--~g~~~~~----~~r~t~Vw~k------~~g~Wk~~~hQ~  123 (129)
T 3ksp_A           88 VEDHFS---Y--GRSMYIG----RFRSVSLYHW------ANEGWKWHFHQL  123 (129)
T ss_dssp             EEEEEE---E--TTEEEEE----EEEEEEEEEE------ETTEEEEEEEEE
T ss_pred             EEEEEE---E--CCCCCCE----EEEEEEEEEE------ECCEEEEEEEEC
T ss_conf             999998---5--5877534----7999999999------499789999827


No 7  
>3h3h_A Uncharacterized snoal-like protein; YP_438428.1, snoal-like protein of unknown function, structural genomics; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}
Probab=83.69  E-value=2.1  Score=21.08  Aligned_cols=29  Identities=14%  Similarity=0.063  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             99999999999984276789997318999
Q gi|254780815|r  106 EARNSYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       106 gAk~af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      .||+....-.+||+++|++.|-.++++++
T Consensus         9 ~a~~~~~~~~~a~n~~D~d~i~~~~aeD~   37 (122)
T 3h3h_A            9 FAQQFSREWIDAWNAHDLDAILSHYADGF   37 (122)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHTTEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHCCCCE
T ss_conf             99999999999997589678887377988


No 8  
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=82.17  E-value=0.38  Score=25.80  Aligned_cols=33  Identities=12%  Similarity=0.209  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHH
Q ss_conf             999999999999999842767899973189999
Q gi|254780815|r  103 FLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY  135 (232)
Q Consensus       103 Fl~gAk~af~~I~~A~~~gD~~~L~~lls~~~~  135 (232)
                      =++-|+++|+...+||.+||++.+..++++++.
T Consensus        10 ~~~~a~~~~e~f~~a~~~gD~e~~~~l~adD~~   42 (134)
T 3dmc_A           10 TLKVAHQGFEFFTQGLATGEWQKFLDMLTEDFT   42 (134)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCHHHHTTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEE
T ss_conf             699999999999999986898899987678579


No 9  
>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22
Probab=79.87  E-value=2.9  Score=20.21  Aligned_cols=101  Identities=9%  Similarity=0.096  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCHHHH---------HH---HHHHHHHHHHC-CCCCEEEEEEHHHHHHHHHCCCCCE
Q ss_conf             99999999999842767899973189999---------99---99877764434-9820236620001245421134645
Q gi|254780815|r  107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVY---------QD---FNDSLSTRKSN-EKNVKSSLVGIDDMKIINASIEENT  173 (232)
Q Consensus       107 Ak~af~~I~~A~~~gD~~~L~~lls~~~~---------~~---f~~~i~~r~~~-~~~~~~~~v~i~~~~i~~~~~~~~~  173 (232)
                      -+..+....+||++||.+.|..+.+|+..         ..   +.+.....-.. ......+      ...+.+...++.
T Consensus         5 I~~l~~~~~~A~~~~D~d~l~~l~a~Dav~~~~~g~~~~G~~ai~~~~~~~~~~~~~~~~~~------~~~~~v~~~gD~   78 (142)
T 2gxf_A            5 LKDIISACDLAIQNEDFDTLMNYYSEDAVLVVKPGMIARGKEEIKKAFITIANYFNHHIVPT------QGKMILLEAGDT   78 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHTTSEEEEEEEECSSSCEEEHHHHHHHHHHHTTSCCCSSCCCE------EEEEEEEEETTE
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCCEECCHHHHHHHHHHHHHHCCCCEEEE------EEEEEEEECCCE
T ss_conf             99999999999986999999973047808984899655278999999999987567752899------757999956996


Q ss_pred             EEEEEEEEEEEEEEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCEEEEE
Q ss_conf             699999988877766768996805765784899999999961898998668957
Q gi|254780815|r  174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS  227 (232)
Q Consensus       174 ~~itV~F~~~~i~~~~d~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~W~L~~  227 (232)
                      ++++.++....     +..|..      .....+..++|.|.   .|..|+++-
T Consensus        79 A~v~~~~~~~~-----~~~g~~------~~~~gr~t~V~~r~---~DG~W~~~~  118 (142)
T 2gxf_A           79 VLVLSQTLLDS-----DKKDSE------YAMERRATYVFKKN---AQGEWLCVI  118 (142)
T ss_dssp             EEEEEEEECCC--------------------EEEEEEEEEEC---TTSCEEEEE
T ss_pred             EEEEEEEEEEE-----ECCCCC------EEEEEEEEEEEEEC---CCCCEEEEE
T ss_conf             99999999998-----469984------77789999999999---999899999


No 10 
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=77.43  E-value=1.5  Score=22.00  Aligned_cols=27  Identities=11%  Similarity=0.215  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             999999999984276789997318999
Q gi|254780815|r  108 RNSYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       108 k~af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      ..+.+...+||.+||++.+..+++|++
T Consensus        15 ~~~~~~~~~A~~~~D~da~~~l~~~D~   41 (143)
T 2f86_B           15 VRVTQTLLDAISCKDFETYTRLCDTSM   41 (143)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHCCCCC
T ss_conf             999999999998589989985218998


No 11 
>3bb9_A Putative orphan protein; YP_750657.1, putative ketosteroid isomerase, structural genomics; HET: MSE; 1.80A {Shewanella frigidimarina ncimb 400} SCOP: d.17.4.16
Probab=76.35  E-value=3.7  Score=19.56  Aligned_cols=28  Identities=14%  Similarity=0.173  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             9999999999984276789997318999
Q gi|254780815|r  107 ARNSYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       107 Ak~af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      +..+......||.+||.+.+..|+++++
T Consensus        32 i~~v~~~~~~A~~~gD~d~~~~l~a~D~   59 (148)
T 3bb9_A           32 AGNVVKQFHAALQMGNEAIVRQSLAANV   59 (148)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf             9999999999998489999998708985


No 12 
>2owp_A Hypothetical protein BXE_B1374; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Burkholderia xenovorans LB400} SCOP: d.17.4.18
Probab=76.22  E-value=3.7  Score=19.54  Aligned_cols=31  Identities=10%  Similarity=0.238  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHCHH
Q ss_conf             9999999999999998427678999731899
Q gi|254780815|r  103 FLNEARNSYEAIVDSFFEGKVHAIEKLVDSR  133 (232)
Q Consensus       103 Fl~gAk~af~~I~~A~~~gD~~~L~~lls~~  133 (232)
                      =....+.++....+||..||++.|..+.+++
T Consensus         9 ~~aeV~a~~~~~~~A~~~~D~~al~al~~~d   39 (129)
T 2owp_A            9 IVAQVQAAFVEYERALVENDIEAMNALFWHT   39 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHTBCCS
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC
T ss_conf             9999999999999999808999999864169


No 13 
>3ehc_A Snoal-like polyketide cyclase; 17741376, structural genomics, joint center for structural genomics, JCSG; 2.12A {Agrobacterium tumefaciens str}
Probab=74.31  E-value=3.1  Score=20.04  Aligned_cols=29  Identities=24%  Similarity=0.342  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             99999999999984276789997318999
Q gi|254780815|r  106 EARNSYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       106 gAk~af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      .++..|....+||+++|.+.+..|++|++
T Consensus         4 ~~~~~~~~y~~a~n~~d~d~~~~~~~~dv   32 (128)
T 3ehc_A            4 TLNDIYLAYLDSLNHQAFDELGTFVDDNV   32 (128)
T ss_dssp             CHHHHHHHHHHHHHTTCGGGGGGTEEEEE
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHCCCCE
T ss_conf             39999999999983589999986727765


No 14 
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}
Probab=70.01  E-value=5.2  Score=18.61  Aligned_cols=102  Identities=7%  Similarity=0.084  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHCHHHH------------HHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCCE
Q ss_conf             999999999999842767899973189999------------99998777644349820236620001245421134645
Q gi|254780815|r  106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVY------------QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT  173 (232)
Q Consensus       106 gAk~af~~I~~A~~~gD~~~L~~lls~~~~------------~~f~~~i~~r~~~~~~~~~~~v~i~~~~i~~~~~~~~~  173 (232)
                      .-+.++....+||+.+|.+.+..+.+|+..            +.+.+-....-..+.. ...      .+...+...++.
T Consensus         7 aI~~~~~~~~~A~~~~D~~~~~~l~~~d~~~~~~~~~~~~G~e~i~~~~~~~~~~~~~-~~~------~~~~~i~~~gd~   79 (129)
T 3hx8_A            7 AIEAANADFVKAYNSKDAAGVASKYMDDAAAFPPDMARVDGRQNIQKLWQGAMDMGIS-ELK------LTTLDVQESGDF   79 (129)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTSCCEESHHHHHHHHHHHHHTTCE-EEE------EEEEEEEEETTE
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCCEEECHHHHHHHHHHHHHCCCC-CEE------EEEEEEEECCCE
T ss_conf             9999999999999858999999861898389879983676789999999998732886-169------852677851885


Q ss_pred             EEEEEEEEEEEEEEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCEEEEE
Q ss_conf             699999988877766768996805765784899999999961898998668957
Q gi|254780815|r  174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS  227 (232)
Q Consensus       174 ~~itV~F~~~~i~~~~d~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~W~L~~  227 (232)
                      +.++-++...    .++++|..+.      ..-+.+.+|.|.   .|..|++..
T Consensus        80 A~~~~~~~~~----~~~~~g~~~~------~~g~~~~v~~k~---~dG~Wki~~  120 (129)
T 3hx8_A           80 AFESGSFSLK----APGKDSKLVD------AAGKYVVVWRKG---QDGGWKLYR  120 (129)
T ss_dssp             EEEEEEEEEE----EECTTSCEEE------EEEEEEEEEEEC---TTSCEEEEE
T ss_pred             EEEEEEEEEE----EECCCCCCEE------EEEEEEEEEEEC---CCCCEEEEE
T ss_conf             8999999999----7268886235------669999999997---899699999


No 15 
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM kinase) II gamma; transferase, oligomerisation domain, serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*
Probab=69.60  E-value=5.3  Score=18.55  Aligned_cols=30  Identities=20%  Similarity=0.319  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHCHHHH
Q ss_conf             999999999999842767899973189999
Q gi|254780815|r  106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVY  135 (232)
Q Consensus       106 gAk~af~~I~~A~~~gD~~~L~~lls~~~~  135 (232)
                      .-..+.....+||.+||.+.+..+++|+..
T Consensus        14 eI~~~~~~~~~A~~~~D~~~~~~l~~~d~~   43 (143)
T 2ux0_A           14 EIIKITEQLIEAINNGDFEAYTKICDPGLT   43 (143)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
T ss_conf             999999999999984999999986368950


No 16 
>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9
Probab=65.71  E-value=1.5  Score=22.01  Aligned_cols=29  Identities=14%  Similarity=0.116  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             99999999999984276789997318999
Q gi|254780815|r  106 EARNSYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       106 gAk~af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      .-|+......+||+++|++.|..+++|++
T Consensus         5 ~~k~lv~~~~~Awn~~D~~~l~~~~apD~   33 (158)
T 2gey_A            5 ERKALCLEMVAAWNRWDLSGIIKHWSPDI   33 (158)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHTTEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHCCCCE
T ss_conf             99999999999997689999998709998


No 17 
>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}
Probab=63.55  E-value=6.9  Score=17.81  Aligned_cols=104  Identities=6%  Similarity=-0.009  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCHHH------------HHHHHHHHHHHHHC---CCCCEEEEEEHHHHHHHHHCCCC
Q ss_conf             9999999999984276789997318999------------99999877764434---98202366200012454211346
Q gi|254780815|r  107 ARNSYEAIVDSFFEGKVHAIEKLVDSRV------------YQDFNDSLSTRKSN---EKNVKSSLVGIDDMKIINASIEE  171 (232)
Q Consensus       107 Ak~af~~I~~A~~~gD~~~L~~lls~~~------------~~~f~~~i~~r~~~---~~~~~~~~v~i~~~~i~~~~~~~  171 (232)
                      -+..+.....||+++|.+.+..+.+++.            .+.+.....+.-..   +.........+       ..+.+
T Consensus         8 I~~ll~~y~~A~~~~D~d~~~~l~~~d~~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~v-------~~~~~   80 (146)
T 3gzr_A            8 IQALIQAYFTAWNTNAPERFAEIFWPDGSWVNVVGMHWRGRDQIVFAHTAFLKTIFKDCKQELVTIEA-------RTIAP   80 (146)
T ss_dssp             HHHHHHHHHHHHHTTCGGGSGGGEEEEEEEECTTCCEEESHHHHHHHHHHHHHTTTTTCCEEEEEEEE-------EEEET
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEECCCCEEECHHHHHHHHHHHHHHCCCCEEEEEEEEEE-------EEECC
T ss_conf             99999999999986899999987404825993899877678899999999863046524999975789-------99737


Q ss_pred             CEEEEEEEEEEEEEEEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEE
Q ss_conf             4569999998887776676899680576578489999999996189899866895763
Q gi|254780815|r  172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK  229 (232)
Q Consensus       172 ~~~~itV~F~~~~i~~~~d~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~W~L~~iq  229 (232)
                      +.+.+.+++....   ..+..     |.+.........|+|.|.    +..|+++..+
T Consensus        81 d~A~~~~~~~~~~---~~~~~-----~~~~~~~~~~~t~v~~k~----~g~Wkiv~~H  126 (146)
T 3gzr_A           81 GSALAVVTLIQDA---YVTPD-----GRQMPRAHDRLTLLAVER----EGVWRFIHGH  126 (146)
T ss_dssp             TEEEEEEEEEECC---EECTT-----CCEECCEEEEEEEEEEEE----TTEEEEEEEE
T ss_pred             CEEEEEEEEEEEE---EECCC-----CCCCCCEEEEEEEEEEEE----CCEEEEEEEE
T ss_conf             1689999999987---50689-----973332379999999998----9999999988


No 18 
>3ebt_A Uncharacterized NTF2-like protein; YP_110153.1, NTF2-like protein of unknown function, structural genomics; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9
Probab=60.33  E-value=7.9  Score=17.44  Aligned_cols=28  Identities=7%  Similarity=0.146  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             9999999999984276789997318999
Q gi|254780815|r  107 ARNSYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       107 Ak~af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      .++......+||+++|.+.+..+++|++
T Consensus         5 n~~~v~~~~~a~~~~D~~~~~~~~~dD~   32 (132)
T 3ebt_A            5 NMQTVRESYEAFHRRDLPGVLAALAPDV   32 (132)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHTTEEEEE
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCCCE
T ss_conf             9999999999998689989998618666


No 19 
>3fh1_A Uncharacterized NTF2-like protein; NP_108339.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=60.11  E-value=2.7  Score=20.46  Aligned_cols=28  Identities=14%  Similarity=0.152  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             9999999999984276789997318999
Q gi|254780815|r  107 ARNSYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       107 Ak~af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      +++......+||+.||++.+..|++|++
T Consensus        19 ~~eiv~~~~~A~~~~D~da~~~l~a~D~   46 (129)
T 3fh1_A           19 TAEIMRRFNDVFQLHDPAALPELIAEEC   46 (129)
T ss_dssp             HHHHHHHHHHHHHTTCGGGHHHHEEEEE
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHCCCCE
T ss_conf             9999999999998479999998608766


No 20 
>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=57.94  E-value=2  Score=21.18  Aligned_cols=27  Identities=11%  Similarity=0.094  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             999999999984276789997318999
Q gi|254780815|r  108 RNSYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       108 k~af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      |+......+||+++|++.+..+++|++
T Consensus         7 ~~~v~~~~~awn~~D~~~~~~~~~pd~   33 (152)
T 2gex_A            7 KERCLEMVAAWNRWDVSGVVAHWAPDV   33 (152)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHTTEEEEE
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHCCCCE
T ss_conf             999999999995489999998708662


No 21 
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}
Probab=56.48  E-value=2.7  Score=20.45  Aligned_cols=27  Identities=11%  Similarity=0.159  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             999999999984276789997318999
Q gi|254780815|r  108 RNSYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       108 k~af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      |..-....+||+++|++.+..||++++
T Consensus         9 ~~lv~~y~~A~~~~D~d~~~~llaeD~   35 (114)
T 3f40_A            9 RDLVLEFIHALNTENFPAAKKRLNENF   35 (114)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHTEEEEE
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHCCCE
T ss_conf             999999999987339999998613577


No 22 
>1s5a_A Hypothetical protein YESE; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus subtilis} SCOP: d.17.4.10
Probab=56.16  E-value=4.4  Score=19.09  Aligned_cols=31  Identities=13%  Similarity=0.249  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             9999999999999984276789997318999
Q gi|254780815|r  104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       104 l~gAk~af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      ++.++..+....+|+.++|++.+..|+++++
T Consensus         9 ~~~~~e~v~~~~~a~~~~D~~~~~~l~~~D~   39 (150)
T 1s5a_A            9 FEKACETLRKFMAYMLEKDMKSWTELWDENA   39 (150)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHTTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHCCCCE
T ss_conf             7999999999999998389999998528977


No 23 
>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29
Probab=55.49  E-value=4.2  Score=19.16  Aligned_cols=28  Identities=4%  Similarity=0.044  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             9999999999984276789997318999
Q gi|254780815|r  107 ARNSYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       107 Ak~af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      .+..-.+..+||+++|++.+..+++|++
T Consensus         5 ~e~~V~~~~~A~n~~D~d~~~~~~a~D~   32 (123)
T 2k54_A            5 IELPVQKQLEAYNARDIDAFMAWWADDC   32 (123)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHTEEEEE
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHCCCCE
T ss_conf             8999999999997779999997538875


No 24 
>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structural genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20
Probab=55.44  E-value=3.1  Score=20.07  Aligned_cols=30  Identities=17%  Similarity=0.205  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             999999999999984276789997318999
Q gi|254780815|r  105 NEARNSYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       105 ~gAk~af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      +..|+......+||++||++.+..|+++++
T Consensus         5 e~~keiv~~~~~A~~~~D~d~~~~l~~dD~   34 (128)
T 3en8_A            5 EKIREALNAHWQASAAGDFDAEHDIYDDDA   34 (128)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHTTTEEEEE
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHCCCE
T ss_conf             999999999999998589999998616888


No 25 
>3g0k_A Putative membrane protein; YP_498150.1, protein of unknown function with A cystatin- like fold; HET: MSE; 1.30A {Novosphingobium aromaticivorans DSM12444}
Probab=54.13  E-value=10  Score=16.79  Aligned_cols=25  Identities=8%  Similarity=0.115  Sum_probs=19.5

Q ss_pred             HHHHHHHHHCCCHHHHHHHHCHHHH
Q ss_conf             9999999842767899973189999
Q gi|254780815|r  111 YEAIVDSFFEGKVHAIEKLVDSRVY  135 (232)
Q Consensus       111 f~~I~~A~~~gD~~~L~~lls~~~~  135 (232)
                      -+...++|+++|++.|..|++|++.
T Consensus        34 ~~fy~~~~n~~D~~al~~~~a~d~v   58 (148)
T 3g0k_A           34 IEMYNKVLIAMDSSAVDRYIAPGYV   58 (148)
T ss_dssp             HHHHHHTTTTTCGGGGGGTEEEEEE
T ss_pred             HHHHHHHHHCCCHHHHHHHHCCCEE
T ss_conf             9999999975899999987097858


No 26 
>3h51_A Putative calcium/calmodulin dependent protein kinase II association domain; NP_636218.1, structural genomics; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}
Probab=50.41  E-value=11  Score=16.42  Aligned_cols=101  Identities=7%  Similarity=0.132  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCHHH--H-----------HHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCCE
Q ss_conf             9999999999984276789997318999--9-----------99998777644349820236620001245421134645
Q gi|254780815|r  107 ARNSYEAIVDSFFEGKVHAIEKLVDSRV--Y-----------QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT  173 (232)
Q Consensus       107 Ak~af~~I~~A~~~gD~~~L~~lls~~~--~-----------~~f~~~i~~r~~~~~~~~~~~v~i~~~~i~~~~~~~~~  173 (232)
                      .++.+....+||++||.+.+..+.+|+.  +           +.+..-.................   ..    ...++.
T Consensus        22 I~al~~~~~~A~~~~D~d~~~al~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---v~----~~~~d~   94 (156)
T 3h51_A           22 VAALFDTWNAALATGNPHKVADLYAPDGVLLPTVSNEVRASREQIENYFEMFLTKKPKGVINYRT---VR----LLDDDS   94 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHTTEEEEEEEECSSCSSCBCSHHHHHHHHHHHGGGCCEEEEEEEE---EE----ECSSSE
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCCCCEEECCCCCCEECCHHHHHHHHHHHHHCCCCEEEECCE---EE----EECCCC
T ss_conf             99999999999986899999974056847962789840068899988988764128725970334---89----964873


Q ss_pred             EEEEEEEEEEEEEEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCEEEEEE
Q ss_conf             6999999888777667689968057657848999999999618989986689576
Q gi|254780815|r  174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST  228 (232)
Q Consensus       174 ~~itV~F~~~~i~~~~d~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~W~L~~i  228 (232)
                      +.++..+....    ...+|..     .. ...+..++|.|.    +..|+++..
T Consensus        95 A~~~~~~~~~~----~~~~g~~-----~~-~~~R~t~v~~K~----dG~WkI~~~  135 (156)
T 3h51_A           95 AVDAGVYTFTL----TDKNGKK-----SD-VQARYTFVYEKR----DGKWLIINH  135 (156)
T ss_dssp             EEEEEEEEEEE----ECTTSCE-----EE-EEEEEEEEEEEE----TTEEEEEEE
T ss_pred             EEEEEEEEEEE----ECCCCCC-----CE-EEEEEEEEEEEE----CCEEEEEEE
T ss_conf             48999999997----2378986-----36-899999999998----998899999


No 27 
>3g8z_A Protein of unknown function with cystatin-like fold; NP_639274.1, snoal-like polyketide cyclase, structural genomics; HET: MSE; 1.90A {Xanthomonas campestris PV}
Probab=50.03  E-value=3.6  Score=19.60  Aligned_cols=27  Identities=7%  Similarity=0.209  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             999999999984276789997318999
Q gi|254780815|r  108 RNSYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       108 k~af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      +.......+||.++|++.+..|++|++
T Consensus        23 ~eiv~~~~~A~~~~D~e~~~~l~a~Dv   49 (148)
T 3g8z_A           23 IDIAKSYITAIQTGDHATLGSIISPDV   49 (148)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHCCCCE
T ss_conf             999999999998489999998559988


No 28 
>1nww_A Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {Rhodococcus erythropolis} SCOP: d.17.4.8 PDB: 1nu3_A*
Probab=47.69  E-value=6.4  Score=18.05  Aligned_cols=27  Identities=4%  Similarity=0.053  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHCHHHH
Q ss_conf             999999999842767899973189999
Q gi|254780815|r  109 NSYEAIVDSFFEGKVHAIEKLVDSRVY  135 (232)
Q Consensus       109 ~af~~I~~A~~~gD~~~L~~lls~~~~  135 (232)
                      +..+.+.+||+++|.+.+..|++|++.
T Consensus        26 ~iv~~~~~A~~~~D~~~~~~~~a~D~~   52 (149)
T 1nww_A           26 KIVLEFMDALTSNDAAKLIEYFAEDTM   52 (149)
T ss_dssp             HHHHHHHHHGGGCCHHHHHTTBCSSCE
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHCCCEE
T ss_conf             999999999875699999987078779


No 29 
>3fgy_A Uncharacterized NTF2-like protein; YP_554211.1, NTF2-like protein of unknown function., structural genomics; HET: MSE; 1.59A {Burkholderia xenovorans LB400}
Probab=46.20  E-value=5.2  Score=18.60  Aligned_cols=28  Identities=4%  Similarity=0.030  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHCHHHH
Q ss_conf             9999999999842767899973189999
Q gi|254780815|r  108 RNSYEAIVDSFFEGKVHAIEKLVDSRVY  135 (232)
Q Consensus       108 k~af~~I~~A~~~gD~~~L~~lls~~~~  135 (232)
                      ++..+...+||.+||++.+..+++|++.
T Consensus         8 ~~~v~~~~~a~~~~D~d~~~~~~~~D~~   35 (135)
T 3fgy_A            8 VQIVKDFFAAMGRGDKKGLLAVSAEDIE   35 (135)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHTEEEEEE
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHCCCEE
T ss_conf             9999999999985899999987185748


No 30 
>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10
Probab=44.97  E-value=4.7  Score=18.86  Aligned_cols=28  Identities=4%  Similarity=-0.148  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             9999999999984276789997318999
Q gi|254780815|r  107 ARNSYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       107 Ak~af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      +++.......||+++|++.+..+++|++
T Consensus        14 ~~~iV~~~~~A~~~~D~~~~~~~la~D~   41 (140)
T 3ec9_A           14 PYQIVADHYAASDRHDPAAMMADIAPAI   41 (140)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHTTEEEEE
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHCCCCC
T ss_conf             9999999999998649989998629762


No 31 
>3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein, structural genomics center for structural genomics, JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis} SCOP: d.17.4.17
Probab=44.36  E-value=14  Score=15.83  Aligned_cols=109  Identities=15%  Similarity=0.133  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHCH---------------------------------HHHHHHHHHHHHHHHCCC
Q ss_conf             99999999999999842767899973189---------------------------------999999987776443498
Q gi|254780815|r  104 LNEARNSYEAIVDSFFEGKVHAIEKLVDS---------------------------------RVYQDFNDSLSTRKSNEK  150 (232)
Q Consensus       104 l~gAk~af~~I~~A~~~gD~~~L~~lls~---------------------------------~~~~~f~~~i~~r~~~~~  150 (232)
                      .+....+-+..-+||.+||++.+..+-++                                 ++.+.|..-..    ...
T Consensus        11 ~~~v~~a~~afy~A~~~~D~~~m~alw~~~~~~~~~~~~~~~~~~d~v~cvhPgg~~~~G~~ai~~~w~~~~~----~~~   86 (170)
T 3cnx_A           11 VEQVGLANTAFYEAMERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPGWPVLSGRGEVLRSYALIMA----NTE   86 (170)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHBCCHHHHTC------CCCTTCCEEECTTCCEEEHHHHHHHHHHHHHH----TCS
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHC----CCC
T ss_conf             9999999999999998089999997514654433344444544557448878998643599999999999963----577


Q ss_pred             CCEEEEEEHHHHHHHHHCCCCCEEEEEEEEEEEEEEEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEE
Q ss_conf             2023662000124542113464569999998887776676899680576578489999999996189899866895763
Q gi|254780815|r  151 NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK  229 (232)
Q Consensus       151 ~~~~~~v~i~~~~i~~~~~~~~~~~itV~F~~~~i~~~~d~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~W~L~~iq  229 (232)
                      ...++..      .+.+...++.++++..-....   .....+....+.+.....+.-..+|.|.    +..|+|+.-+
T Consensus        87 ~~~~~~~------~v~v~v~gD~A~v~~~e~v~~---~~~~~~~~~~~g~~~~~~~r~T~Vfrr~----dg~WkivhhH  152 (170)
T 3cnx_A           87 YIQFFLT------DVHVSVTGDTALVTCTENILS---GGPPPDDSDELGPLVGQLVVATNVFRRT----PDGWKLWSHH  152 (170)
T ss_dssp             EEEEEEE------EEEEEEETTEEEEEEEEEEEE---EC---------CCCEEEEEEEEEEEECC----TTCCEEEEEE
T ss_pred             CCCCEEE------CCEEEEECCEEEEEEEEEEEE---CCCCCCCCCCCCCCCCEEEEEEEEEEEE----CCEEEEEEEC
T ss_conf             6531443------156999687899999999873---2555554356776444279999999997----9979999984


No 32 
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27
Probab=43.88  E-value=14  Score=15.78  Aligned_cols=102  Identities=5%  Similarity=0.089  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHCHHHH------------HHHHHHHHHHHHCCC-CCEEEEEEHHHHHHHHHCCCCCEE
Q ss_conf             9999999999842767899973189999------------999987776443498-202366200012454211346456
Q gi|254780815|r  108 RNSYEAIVDSFFEGKVHAIEKLVDSRVY------------QDFNDSLSTRKSNEK-NVKSSLVGIDDMKIINASIEENTV  174 (232)
Q Consensus       108 k~af~~I~~A~~~gD~~~L~~lls~~~~------------~~f~~~i~~r~~~~~-~~~~~~v~i~~~~i~~~~~~~~~~  174 (232)
                      ++++.....||+++|.+.+..+.+++..            +.+.+.....-.... ......     ..+  ..+.++.+
T Consensus        14 ~~~~~~y~~A~~~~D~~~~~~l~t~D~v~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~d~A   86 (135)
T 3d9r_A           14 EAAAIAYLTAFNRADIPAVIATYTDDGVLMGPGRPAAVGKDELAEVYLSVFETVGFDMAYEI-----KEV--VQTSADWA   86 (135)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTSCCEESHHHHHHHHHHHHHHEEEEEEEEE-----EEE--EEEETTEE
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHCCCCEEECCCCCEEECHHHHHHHHHHHHHCCCCEEEEEE-----EEE--EEECCCEE
T ss_conf             99999999999869999999873346257547995670789999999999840873158850-----026--86169989


Q ss_pred             EEEEEEEEEEEEEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCEEEEEE
Q ss_conf             999999888777667689968057657848999999999618989986689576
Q gi|254780815|r  175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST  228 (232)
Q Consensus       175 ~itV~F~~~~i~~~~d~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~W~L~~i  228 (232)
                      .+...+.....   .+..|.      ..+.....+..|.|.   .|..|+++.-
T Consensus        87 ~~~~~~~~~~~---~~~~~~------~~~~~~~~~~v~~r~---~dG~Wki~~~  128 (135)
T 3d9r_A           87 FVRSATEGTET---NKATGV------VTPAAYQELFLLRKS---ATGSWQTARY  128 (135)
T ss_dssp             EEEEEEEEEEE---ETTTCC------EEEEEEEEEEEEEEC---TTSCEEEEEE
T ss_pred             EEEEEEEEEEE---ECCCCC------EEEEEEEEEEEEEEC---CCCCEEEEEE
T ss_conf             99999999999---859995------065207999999998---9995999997


No 33 
>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}
Probab=42.49  E-value=2.3  Score=20.84  Aligned_cols=27  Identities=15%  Similarity=0.228  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             999999999984276789997318999
Q gi|254780815|r  108 RNSYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       108 k~af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      +.....|++||++||++.+..++++++
T Consensus         3 e~~~~~~~~~f~~gD~~~~~~~~~dDv   29 (112)
T 3f14_A            3 ETTHYSIAQHFSSGDFPAVYACFNDII   29 (112)
T ss_dssp             HHHHHHHHHHHHTTCGGGTGGGEEEEE
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHCCCCE
T ss_conf             148999999998789999998659989


No 34 
>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8
Probab=42.43  E-value=9.2  Score=17.04  Aligned_cols=29  Identities=10%  Similarity=0.237  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCHHHH
Q ss_conf             99999999999842767899973189999
Q gi|254780815|r  107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVY  135 (232)
Q Consensus       107 Ak~af~~I~~A~~~gD~~~L~~lls~~~~  135 (232)
                      +....+....||.+||++.+..|+++++.
T Consensus        17 n~~vV~~~~~A~~~~D~d~~~~l~aeD~~   45 (149)
T 2bng_A           17 AIRAVEAFLNALQNEDFDTVDAALGDDLV   45 (149)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCCCEE
T ss_conf             99999999999875899999987188869


No 35 
>3f7x_A Putative polyketide cyclase; NP_743055.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.24A {Pseudomonas putida KT2440}
Probab=41.97  E-value=5.7  Score=18.36  Aligned_cols=25  Identities=24%  Similarity=0.274  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             9999999984276789997318999
Q gi|254780815|r  110 SYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       110 af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      ..+...+||+.+|.+.+..+++|++
T Consensus        25 iv~~~~~A~n~~D~~~l~~~~a~Dv   49 (151)
T 3f7x_A           25 LVNAYYAAFNAGDMPAFLALLSEDV   49 (151)
T ss_dssp             HHHHHHHHHHHTCHHHHHHTEEEEE
T ss_pred             HHHHHHHHHHCCCHHHHHHHCCCCE
T ss_conf             9999999998789999998469988


No 36 
>3i0y_A Putative polyketide cyclase; NP_635776.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.50A {Xanthomonas campestris PV}
Probab=41.79  E-value=6.7  Score=17.90  Aligned_cols=30  Identities=20%  Similarity=0.272  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             999999999999984276789997318999
Q gi|254780815|r  105 NEARNSYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       105 ~gAk~af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      +.++...+...+||+++|++.+..++++++
T Consensus         8 ~~~~~li~~~~~a~~~~D~~~~~~~~~~D~   37 (140)
T 3i0y_A            8 QRATGLVQAYYEAFNRGDWDAMLAFLAEDV   37 (140)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHTEEEEE
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHCCCCE
T ss_conf             799999999999998789999998628785


No 37 
>3k0z_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: NHE; 1.91A {Bacillus cereus atcc 10987}
Probab=41.66  E-value=7.3  Score=17.68  Aligned_cols=25  Identities=16%  Similarity=0.143  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             9999999984276789997318999
Q gi|254780815|r  110 SYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       110 af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      +..+..+||++||++.|..+++|++
T Consensus        39 ~a~~~~~awn~gd~~~i~~l~a~d~   63 (159)
T 3k0z_A           39 AAQRFYAFWDTGKEELIPQTVTENF   63 (159)
T ss_dssp             HHHHHHHHHHHCCGGGHHHHEEEEE
T ss_pred             HHHHHHHHHHCCCHHHHHHHCCCCE
T ss_conf             9999999986699999998618789


No 38 
>3f9s_A Putative polyketide cyclase; AFE_2539, structural genomics, joint center for structural genomics, JCSG; 1.76A {Acidithiobacillus ferrooxidans ATCC23270}
Probab=40.72  E-value=16  Score=15.47  Aligned_cols=27  Identities=15%  Similarity=0.357  Sum_probs=19.7

Q ss_pred             HHHHHHH-HHHHHCCCHHHHHHHHCHHH
Q ss_conf             9999999-99984276789997318999
Q gi|254780815|r  108 RNSYEAI-VDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       108 k~af~~I-~~A~~~gD~~~L~~lls~~~  134 (232)
                      |+..... .++|+++|.+.+..|++|++
T Consensus         9 k~~V~~~~~~~~n~~d~~~~~~~~a~d~   36 (146)
T 3f9s_A            9 KEILTQFTREVWSEGNIEASDKYIAPKY   36 (146)
T ss_dssp             HHHHHHHHHHHTTTCCGGGHHHHEEEEE
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCCCE
T ss_conf             9999999999986799999998728888


No 39 
>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 1ogz_A* 3m8c_A* 1buq_A*
Probab=40.41  E-value=9.2  Score=17.02  Aligned_cols=28  Identities=14%  Similarity=0.190  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             9999999999984276789997318999
Q gi|254780815|r  107 ARNSYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       107 Ak~af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      .++..+....||..+|++.+..++++++
T Consensus         7 ~~~~v~~~~~a~~~~D~~~~~~~~a~D~   34 (125)
T 1ohp_A            7 MTAVVQRYVAALNAGDLDGIVALFADDA   34 (125)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHTTEEEEE
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf             9999999999987699999999727785


No 40 
>3ff2_A Uncharacterized cystatin fold protein (YP_497570.1) from NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=38.24  E-value=7  Score=17.80  Aligned_cols=28  Identities=7%  Similarity=0.154  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHCHHHH
Q ss_conf             9999999999842767899973189999
Q gi|254780815|r  108 RNSYEAIVDSFFEGKVHAIEKLVDSRVY  135 (232)
Q Consensus       108 k~af~~I~~A~~~gD~~~L~~lls~~~~  135 (232)
                      ++..+...+||+++|++.+..++++++.
T Consensus         5 ~e~v~~~~~A~n~~D~d~~~~~~adD~~   32 (117)
T 3ff2_A            5 LETAKAMIAAYNAQDVDTYVSYMTDDAC   32 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHTTEEEEEE
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHCCCCEE
T ss_conf             9999999999986699999975366669


No 41 
>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, protein structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20
Probab=38.17  E-value=5.6  Score=18.42  Aligned_cols=27  Identities=7%  Similarity=0.228  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             999999999984276789997318999
Q gi|254780815|r  108 RNSYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       108 k~af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      +.....+.+|++++|++.+..++++++
T Consensus         7 ~~~~r~~y~A~~~~d~d~~~~l~~dDv   33 (143)
T 3dm8_A            7 WRFSRALHRALNDRQTEELATIIDDNI   33 (143)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHEEEEE
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHCCCCE
T ss_conf             999999999986479999998648865


No 42 
>2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18
Probab=37.56  E-value=18  Score=15.16  Aligned_cols=37  Identities=14%  Similarity=0.243  Sum_probs=29.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHH
Q ss_conf             6798999999999999999998427678999731899
Q gi|254780815|r   97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR  133 (232)
Q Consensus        97 ~Fd~~~Fl~gAk~af~~I~~A~~~gD~~~L~~lls~~  133 (232)
                      +=+..+=+.....++....+||..||++.|..|.+++
T Consensus         6 ~~~~~~~~aeI~~a~~~y~~A~~~~D~~~l~~l~~~d   42 (129)
T 2rcd_A            6 DVNQADVLADVTAAFYRYEKALTGNDVAVLDELFWHD   42 (129)
T ss_dssp             GBCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHBCCS
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
T ss_conf             6688769999999999999999839999999875079


No 43 
>3fsd_A NTF2-like protein of unknown function in nutrient uptake; YP_427473.1, structural genomics; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170}
Probab=35.62  E-value=19  Score=14.97  Aligned_cols=23  Identities=17%  Similarity=0.466  Sum_probs=20.2

Q ss_pred             HHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             99999984276789997318999
Q gi|254780815|r  112 EAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       112 ~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      +.+.+|+..+|.+.|..|++|++
T Consensus        21 e~~~~A~~~~D~~~l~~l~add~   43 (134)
T 3fsd_A           21 ERLRAAMLTGDLKGLETLLADDL   43 (134)
T ss_dssp             HHHHHHHHHTCHHHHHHHEEEEE
T ss_pred             HHHHHHHHCCCHHHHHHHHCCCE
T ss_conf             99999998589999998641887


No 44 
>2f99_A Aklanonic acid methyl ester cyclase, AKNH; anthracycline,polyketide cyclase,stereoselectivity, aklavinone, biosynthetic protein; HET: AKV; 1.90A {Streptomyces galilaeus} SCOP: d.17.4.9 PDB: 2f98_A*
Probab=35.24  E-value=4.5  Score=18.99  Aligned_cols=29  Identities=10%  Similarity=0.289  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCHHHH
Q ss_conf             99999999999842767899973189999
Q gi|254780815|r  107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVY  135 (232)
Q Consensus       107 Ak~af~~I~~A~~~gD~~~L~~lls~~~~  135 (232)
                      ..++.....+||++||.+.+..|++|++.
T Consensus        13 ~~a~Vr~~~~a~n~gd~d~l~~~~~~d~v   41 (153)
T 2f99_A           13 QIAAVRRMVEAYNTGKTDDVADYIHPEYM   41 (153)
T ss_dssp             HHHHHHHHHHHHHHCCCTTGGGTEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHCCCCEE
T ss_conf             99999999999985999899986599879


No 45 
>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens cn-32} PDB: 3lza_A*
Probab=35.06  E-value=16  Score=15.54  Aligned_cols=25  Identities=8%  Similarity=0.062  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             9999999984276789997318999
Q gi|254780815|r  110 SYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       110 af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      ......+||+++|.+.|..|+++++
T Consensus        25 l~~~~~~a~~~~D~~~l~~~~a~D~   49 (154)
T 3gzb_A           25 LAVKYMDALTEHDYKTLITFYNRDS   49 (154)
T ss_dssp             HHHHHHHHHHTTCHHHHHTTCCTTC
T ss_pred             HHHHHHHHHHHCCHHHHHHHCCCCE
T ss_conf             9999999873429999987506656


No 46 
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=34.99  E-value=16  Score=15.42  Aligned_cols=16  Identities=25%  Similarity=0.432  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             2699999999999999
Q gi|254780815|r    9 GDFLILLFAFITFFVF   24 (232)
Q Consensus         9 ~~i~Iii~A~IA~fl~   24 (232)
                      +..+|+++++||.++|
T Consensus         6 G~~ElliI~vvallvf   21 (78)
T 2l16_A            6 GIPGLILIFVIALIIF   21 (78)
T ss_dssp             CHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHEE
T ss_conf             8999999999986316


No 47 
>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...
Probab=32.67  E-value=12  Score=16.39  Aligned_cols=28  Identities=11%  Similarity=0.170  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             9999999999984276789997318999
Q gi|254780815|r  107 ARNSYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       107 Ak~af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      .+.......+||+++|.+.+..|+++++
T Consensus         9 ~~~~v~~y~~a~~~~D~~~~~~l~a~D~   36 (131)
T 1oh0_A            9 VQGLMARYIELVDVGDIEAIVQMYADDA   36 (131)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf             9999999999997689999999718884


No 48 
>1tuh_A BAL32A, hypothetical protein EGC068; unknown function; 1.85A {Uncultured bacterium} SCOP: d.17.4.11
Probab=30.54  E-value=23  Score=14.44  Aligned_cols=27  Identities=15%  Similarity=0.286  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             999999999984276789997318999
Q gi|254780815|r  108 RNSYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       108 k~af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      ++..+....||+++|.+.+..+++|++
T Consensus        32 ~~iv~~~~~A~~~~D~~~~~~~~~eDv   58 (156)
T 1tuh_A           32 AETVRRGYAAFNSGDMKTLTELFDENA   58 (156)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHCCCCE
T ss_conf             999999999998589999998709988


No 49 
>3nrl_A Uncharacterized protein rumgna_01417; beta protein, structural genomics, PSI-2, protein structure initiative; 1.90A {Ruminococcus gnavus}
Probab=30.20  E-value=13  Score=16.02  Aligned_cols=26  Identities=31%  Similarity=0.537  Sum_probs=19.1

Q ss_pred             EEEEEEEEEEECCCCCCCCEEEEEEECC
Q ss_conf             8999999999618989986689576327
Q gi|254780815|r  204 GKVIDIWTFVRNIPPSNPNWVLISTKLG  231 (232)
Q Consensus       204 ~~~~e~WtF~R~~~~~~p~W~L~~iq~~  231 (232)
                      ..+.+.|.=.|=-..  -+|+|+||...
T Consensus        39 V~v~~~WvptRiEm~--~~WYLVGl~~~   64 (81)
T 3nrl_A           39 VKVKDVWVPVRIEMG--DDWYLVGLNVS   64 (81)
T ss_dssp             EEETTEEEEEEEEES--SSEEEESCCCS
T ss_pred             EEECCEEEEEEEEEC--CCEEEECCCCC
T ss_conf             998999963544732--51699545501


No 50 
>3f8h_A Putative polyketide cyclase; YP_611791.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.00A {Silicibacter SP}
Probab=29.96  E-value=8.3  Score=17.30  Aligned_cols=27  Identities=15%  Similarity=0.288  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             999999999984276789997318999
Q gi|254780815|r  108 RNSYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       108 k~af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      +...+...+||+++|.+.+..+++|++
T Consensus        21 ~eiv~~y~~A~n~~D~~~i~~~~~~D~   47 (150)
T 3f8h_A           21 NDTIARYFDAFNAGDTDGMLACLSEDV   47 (150)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHTTEEEEE
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHCCCCE
T ss_conf             999999999998789999998638999


No 51 
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton transfer pathway, revertant, X-RAY crystallography; HET: BCL BPH BPB U10 SPO LDA HTO CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=29.84  E-value=22  Score=14.61  Aligned_cols=37  Identities=30%  Similarity=0.455  Sum_probs=20.6

Q ss_pred             ECCCC-CEECCCCCCCEEEEEEEEEEECCCCCCCCEEEEEE
Q ss_conf             76899-68057657848999999999618989986689576
Q gi|254780815|r  189 YDKDN-LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST  228 (232)
Q Consensus       189 ~d~~g-~vveG~~~~~~~~~e~WtF~R~~~~~~p~W~L~~i  228 (232)
                      +|-.| .|+..|.+.+=+++|+|.=   -.+.-+.|+.+.|
T Consensus       146 ~DPrG~~Vvg~DGe~iGtV~DlwVD---~~E~~iRYLeVdt  183 (260)
T 1rzh_H          146 KNPIGLPVRGCDLEIAGKVVDIWVD---IPEQMARFLEVEL  183 (260)
T ss_dssp             CCCTTCEEEETTSCEEEEEEEEEEE---TTTTEEEEEEEEC
T ss_pred             CCCCCCEEECCCCCCCCEEEEEEEE---CCCCEEEEEEEEE
T ss_conf             8878985277898842378899980---8877688999996


No 52 
>1sjw_A Nogalonic acid methyl ester cyclase; anthracyclines, nogalamycin, snoal, aldol condensation, lyase, structural genomics; HET: NGV; 1.35A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=27.21  E-value=4.9  Score=18.75  Aligned_cols=27  Identities=11%  Similarity=0.345  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             999999999984276789997318999
Q gi|254780815|r  108 RNSYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       108 k~af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      +...+...+||++||.+.+..|++|++
T Consensus         5 ~eiV~~~~~a~~~~d~~~l~~~~~~d~   31 (144)
T 1sjw_A            5 TEIVRRMVSAFNTGRTDDVDEYIHPDY   31 (144)
T ss_dssp             HHHHHHHHHHHHHCCCTTGGGTEEEEE
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHCCCCE
T ss_conf             999999999998399999997658687


No 53 
>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A
Probab=26.32  E-value=16  Score=15.49  Aligned_cols=27  Identities=7%  Similarity=-0.098  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             999999999984276789997318999
Q gi|254780815|r  108 RNSYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       108 k~af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      ..+++...+|+..+|++.+..|.+|++
T Consensus        10 ~~~~~~~~~a~~~~D~d~~~~l~a~D~   36 (139)
T 2a15_A           10 LIASQSSWRCVQAHDREGWLALMADDV   36 (139)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHTEEEEE
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHCCCCE
T ss_conf             999999999998669889998735987


No 54 
>2knc_A Integrin alpha-IIB; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens}
Probab=26.11  E-value=28  Score=13.95  Aligned_cols=17  Identities=12%  Similarity=0.278  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999
Q gi|254780815|r   11 FLILLFAFITFFVFLQL   27 (232)
Q Consensus        11 i~Iii~A~IA~fl~~RL   27 (232)
                      +.||+.+++++.|++-|
T Consensus        12 ~WiIivsv~~GlLlL~l   28 (54)
T 2knc_A           12 IWWVLVGVLGGLLLLTI   28 (54)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             EEHHHHHHHHHHHHHHH
T ss_conf             30469999999999999


No 55 
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=24.51  E-value=30  Score=13.77  Aligned_cols=27  Identities=19%  Similarity=0.407  Sum_probs=15.4

Q ss_pred             EECCCCHHHHHHHHH------HHHHHHHHHHHH
Q ss_conf             221267026999999------999999999998
Q gi|254780815|r    2 VFIKMDSGDFLILLF------AFITFFVFLQLR   28 (232)
Q Consensus         2 ~~~~m~~~~i~Iii~------A~IA~fl~~RLr   28 (232)
                      +|.|...+-|.-++|      |.+.+++|||-|
T Consensus         4 v~rgltggeivavifglll~~alllg~~~fr~r   36 (38)
T 2k1k_A            4 VSRGLTGGEIVAVIFGLLLGAALLLGILVFRSR   36 (38)
T ss_dssp             SSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCEEHHHHHHHHHHHHHHHHHHHEECC
T ss_conf             556776763089999999999999988841012


No 56 
>3ke7_A Putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG; HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc 8503}
Probab=24.50  E-value=30  Score=13.77  Aligned_cols=25  Identities=16%  Similarity=0.097  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHCHHH
Q ss_conf             9999999984276789997318999
Q gi|254780815|r  110 SYEAIVDSFFEGKVHAIEKLVDSRV  134 (232)
Q Consensus       110 af~~I~~A~~~gD~~~L~~lls~~~  134 (232)
                      ......+||..+|.+.+-.+.+|+.
T Consensus        19 ~i~~~~~A~~~~D~d~~~~l~a~Da   43 (134)
T 3ke7_A           19 IISLEKEALASTDPMAFVELSDTDV   43 (134)
T ss_dssp             HHHHHHHHHHCSCTTHHHHHEEEEE
T ss_pred             HHHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf             9999999998389999998737882


No 57 
>1puo_A Major allergen I polypeptide, fused chain 2, chain 1; CAT allergen, uteroglobin, secretoglobin; 1.85A {Felis catus} SCOP: a.101.1.1 a.101.1.1
Probab=24.40  E-value=30  Score=13.75  Aligned_cols=33  Identities=18%  Similarity=0.378  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHH
Q ss_conf             99999999999984276789997318999999998
Q gi|254780815|r  106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND  140 (232)
Q Consensus       106 gAk~af~~I~~A~~~gD~~~L~~lls~~~~~~f~~  140 (232)
                      +-|.||+.||..|.++-+.+  .++.|.++.++..
T Consensus        37 ~Ek~AfeKIQdCy~E~Glkt--klLdpqIM~si~~   69 (170)
T 1puo_A           37 PERTAMKKIQDCYVENGLIS--RVLDGLVMTTISS   69 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHC
T ss_conf             88999999999997414776--6525999999976


No 58 
>1z1s_A Hypothetical protein PA3332; beta barrel, conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: PGE; 1.49A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.10
Probab=21.68  E-value=31  Score=13.66  Aligned_cols=29  Identities=10%  Similarity=0.037  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCHHHH
Q ss_conf             99999999999842767899973189999
Q gi|254780815|r  107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVY  135 (232)
Q Consensus       107 Ak~af~~I~~A~~~gD~~~L~~lls~~~~  135 (232)
                      ++.....-.+++.+||++.+..|++|++.
T Consensus        25 ~~eiv~~~~~~~~~gD~e~~~~lfaeD~v   53 (163)
T 1z1s_A           25 AKEILVHSLRLLENGDARGWCDLFHPEGV   53 (163)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHTEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHCCCCEE
T ss_conf             99999999999876799899987189889


No 59 
>1zkr_A Major allergen I polypeptide, fused chain 1, chain 2; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A
Probab=21.21  E-value=35  Score=13.35  Aligned_cols=32  Identities=19%  Similarity=0.385  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHH
Q ss_conf             9999999999998427678999731899999999
Q gi|254780815|r  106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN  139 (232)
Q Consensus       106 gAk~af~~I~~A~~~gD~~~L~~lls~~~~~~f~  139 (232)
                      +-|.||+.||..|..+-+.+  .++.+.++..+.
T Consensus       108 ~Er~AfeKIQdCy~E~Glkt--klldpqIM~a~~  139 (153)
T 1zkr_A          108 PERTAMKKIQDCYVENGLIS--RVLDGLVMTTIS  139 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTGGG--SSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCC--HHHCHHHHHHHH
T ss_conf             57889999998863126300--342589999995


No 60 
>3f7s_A Uncharacterized NTF2-like protein; NP_746665.1, NTF2-like protein of unknown function, structural genomics; 2.11A {Pseudomonas putida KT2440}
Probab=20.91  E-value=35  Score=13.32  Aligned_cols=28  Identities=14%  Similarity=0.112  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHCHH
Q ss_conf             9999999999998427678999731899
Q gi|254780815|r  106 EARNSYEAIVDSFFEGKVHAIEKLVDSR  133 (232)
Q Consensus       106 gAk~af~~I~~A~~~gD~~~L~~lls~~  133 (232)
                      .-+..++....||.++|.+.+..+++|+
T Consensus         9 eI~~~~~~~~~A~~~~D~~~~~~~~~~d   36 (142)
T 3f7s_A            9 EIRQLIERWMQAVRDRDIPGIIAPYADD   36 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHTTEEEE
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHCCCC
T ss_conf             9999999999999858999999521388


Done!