Query gi|254780815|ref|YP_003065228.1| hypothetical protein CLIBASIA_03530 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 232 No_of_seqs 133 out of 925 Neff 7.9 Searched_HMMs 23785 Date Mon May 30 12:52:53 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780815.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2cw9_A Translocase of inner mi 100.0 1.2E-38 5.2E-43 264.1 17.1 152 80-231 34-188 (194) 2 2fxt_A Import inner membrane t 100.0 2.1E-36 9E-41 249.8 14.5 149 82-230 35-191 (192) 3 3cu3_A Domain of unknown funct 92.3 0.32 1.4E-05 26.3 6.1 104 106-230 17-135 (172) 4 3k7c_A Putative NTF2-like tran 88.7 1.2 4.9E-05 22.7 7.5 94 111-226 13-112 (114) 5 2r4i_A Uncharacterized protein 86.0 1.7 7E-05 21.7 8.8 103 108-230 9-119 (123) 6 3ksp_A Calcium/calmodulin-depe 83.8 2.1 8.8E-05 21.1 6.0 104 108-230 12-123 (129) 7 3h3h_A Uncharacterized snoal-l 83.7 2.1 8.9E-05 21.1 6.8 29 106-134 9-37 (122) 8 3dmc_A NTF2-like protein; stru 82.2 0.38 1.6E-05 25.8 1.3 33 103-135 10-42 (134) 9 2gxf_A Hypothetical protein YY 79.9 2.9 0.00012 20.2 9.4 101 107-227 5-118 (142) 10 2f86_B Hypothetical protein K1 77.4 1.5 6.4E-05 22.0 3.1 27 108-134 15-41 (143) 11 3bb9_A Putative orphan protein 76.3 3.7 0.00015 19.6 7.2 28 107-134 32-59 (148) 12 2owp_A Hypothetical protein BX 76.2 3.7 0.00016 19.5 10.6 31 103-133 9-39 (129) 13 3ehc_A Snoal-like polyketide c 74.3 3.1 0.00013 20.0 4.0 29 106-134 4-32 (128) 14 3hx8_A MLR2180 protein, putati 70.0 5.2 0.00022 18.6 10.9 102 106-227 7-120 (129) 15 2ux0_A Calcium-calmodulin depe 69.6 5.3 0.00022 18.6 9.5 30 106-135 14-43 (143) 16 2gey_A ACLR protein; alpha+bet 65.7 1.5 6.4E-05 22.0 0.8 29 106-134 5-33 (158) 17 3gzr_A Uncharacterized protein 63.6 6.9 0.00029 17.8 9.4 104 107-229 8-126 (146) 18 3ebt_A Uncharacterized NTF2-li 60.3 7.9 0.00033 17.4 8.9 28 107-134 5-32 (132) 19 3fh1_A Uncharacterized NTF2-li 60.1 2.7 0.00011 20.5 1.3 28 107-134 19-46 (129) 20 2gex_A SNOL; alpha+beta barrel 57.9 2 8.6E-05 21.2 0.4 27 108-134 7-33 (152) 21 3f40_A Uncharacterized NTF2-li 56.5 2.7 0.00011 20.4 0.8 27 108-134 9-35 (114) 22 1s5a_A Hypothetical protein YE 56.2 4.4 0.00018 19.1 1.8 31 104-134 9-39 (150) 23 2k54_A Protein ATU0742; protei 55.5 4.2 0.00018 19.2 1.7 28 107-134 5-32 (123) 24 3en8_A Uncharacterized NTF-2 l 55.4 3.1 0.00013 20.1 0.9 30 105-134 5-34 (128) 25 3g0k_A Putative membrane prote 54.1 10 0.00042 16.8 4.6 25 111-135 34-58 (148) 26 3h51_A Putative calcium/calmod 50.4 11 0.00048 16.4 10.6 101 107-228 22-135 (156) 27 3g8z_A Protein of unknown func 50.0 3.6 0.00015 19.6 0.6 27 108-134 23-49 (148) 28 1nww_A Limonene-1,2-epoxide hy 47.7 6.4 0.00027 18.0 1.6 27 109-135 26-52 (149) 29 3fgy_A Uncharacterized NTF2-li 46.2 5.2 0.00022 18.6 0.9 28 108-135 8-35 (135) 30 3ec9_A Uncharacterized NTF2-li 45.0 4.7 0.0002 18.9 0.5 28 107-134 14-41 (140) 31 3cnx_A Uncharacterized protein 44.4 14 0.0006 15.8 13.6 109 104-229 11-152 (170) 32 3d9r_A Ketosteroid isomerase-l 43.9 14 0.00061 15.8 10.9 102 108-228 14-128 (135) 33 3f14_A Uncharacterized NTF2-li 42.5 2.3 9.7E-05 20.8 -1.4 27 108-134 3-29 (112) 34 2bng_A MB2760; epoxide hydrola 42.4 9.2 0.00038 17.0 1.7 29 107-135 17-45 (149) 35 3f7x_A Putative polyketide cyc 42.0 5.7 0.00024 18.4 0.6 25 110-134 25-49 (151) 36 3i0y_A Putative polyketide cyc 41.8 6.7 0.00028 17.9 0.9 30 105-134 8-37 (140) 37 3k0z_A Putative polyketide cyc 41.7 7.3 0.0003 17.7 1.1 25 110-134 39-63 (159) 38 3f9s_A Putative polyketide cyc 40.7 16 0.00068 15.5 6.4 27 108-134 9-36 (146) 39 1ohp_A Steroid delta-isomerase 40.4 9.2 0.00039 17.0 1.4 28 107-134 7-34 (125) 40 3ff2_A Uncharacterized cystati 38.2 7 0.00029 17.8 0.5 28 108-135 5-32 (117) 41 3dm8_A Uncharacterized protein 38.2 5.6 0.00023 18.4 0.0 27 108-134 7-33 (143) 42 2rcd_A Uncharacterized protein 37.6 18 0.00076 15.2 12.2 37 97-133 6-42 (129) 43 3fsd_A NTF2-like protein of un 35.6 19 0.00081 15.0 9.3 23 112-134 21-43 (134) 44 2f99_A Aklanonic acid methyl e 35.2 4.5 0.00019 19.0 -0.8 29 107-135 13-41 (153) 45 3gzb_A Putative snoal-like pol 35.1 16 0.00066 15.5 1.9 25 110-134 25-49 (154) 46 2l16_A SEC-independent protein 35.0 16 0.00069 15.4 2.0 16 9-24 6-21 (78) 47 1oh0_A Steroid delta-isomerase 32.7 12 0.00049 16.4 0.9 28 107-134 9-36 (131) 48 1tuh_A BAL32A, hypothetical pr 30.5 23 0.00098 14.4 6.7 27 108-134 32-58 (156) 49 3nrl_A Uncharacterized protein 30.2 13 0.00056 16.0 0.9 26 204-231 39-64 (81) 50 3f8h_A Putative polyketide cyc 30.0 8.3 0.00035 17.3 -0.2 27 108-134 21-47 (150) 51 1rzh_H Reaction center protein 29.8 22 0.00093 14.6 2.0 37 189-228 146-183 (260) 52 1sjw_A Nogalonic acid methyl e 27.2 4.9 0.00021 18.8 -1.7 27 108-134 5-31 (144) 53 2a15_A Hypothetical protein RV 26.3 16 0.00067 15.5 0.8 27 108-134 10-36 (139) 54 2knc_A Integrin alpha-IIB; tra 26.1 28 0.0012 14.0 3.3 17 11-27 12-28 (54) 55 2k1k_A Ephrin type-A receptor 24.5 30 0.0013 13.8 2.9 27 2-28 4-36 (38) 56 3ke7_A Putative ketosteroid is 24.5 30 0.0013 13.8 8.7 25 110-134 19-43 (134) 57 1puo_A Major allergen I polype 24.4 30 0.0013 13.8 3.2 33 106-140 37-69 (170) 58 1z1s_A Hypothetical protein PA 21.7 31 0.0013 13.7 1.5 29 107-135 25-53 (163) 59 1zkr_A Major allergen I polype 21.2 35 0.0015 13.4 2.8 32 106-139 108-139 (153) 60 3f7s_A Uncharacterized NTF2-li 20.9 35 0.0015 13.3 11.9 28 106-133 9-36 (142) No 1 >2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13 Probab=100.00 E-value=1.2e-38 Score=264.08 Aligned_cols=152 Identities=17% Similarity=0.394 Sum_probs=147.3 Q ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 542024577776612676798999999999-9999999984276789997318999999998777644349820236620 Q gi|254780815|r 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARN-SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG 158 (232) Q Consensus 80 ~~~~~~~~~~~i~~~~~~Fd~~~Fl~gAk~-af~~I~~A~~~gD~~~L~~lls~~~~~~f~~~i~~r~~~~~~~~~~~v~ 158 (232) ..++.+.+++.|+.+||+||.++|++|||. +|++|++||.+||++.|++|||+++|+.|+.+|++|+.+|.+++.++++ T Consensus 34 ~~~e~~~~l~~ik~~Dp~Fd~~~Fl~~ak~~a~~~I~~A~~~gD~~~Lk~l~se~~~~~f~~~i~~r~~~g~~~~~~il~ 113 (194) T 2cw9_A 34 SKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILD 113 (194) T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHHHHTCHHHHHHHBCHHHHHHHHHHHHHHHHTTCEECCEEEE T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 88889999999997689999899999999999999999998488999988629999999999999999769800478840 Q ss_pred HHHHHHHHHCCCCCEEEEEEEEEEEEEEEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCC--EEEEEEECC Q ss_conf 0012454211346456999999888777667689968057657848999999999618989986--689576327 Q gi|254780815|r 159 IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN--WVLISTKLG 231 (232) Q Consensus 159 i~~~~i~~~~~~~~~~~itV~F~~~~i~~~~d~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~--W~L~~iq~~ 231 (232) |.+++|.+++..++.++++|+|.++|++|++|++|+||+|+++++.+++|+|||+|++++.+|| |+|++||++ T Consensus 114 i~~~eI~~a~~~~~~~~i~V~F~~~qi~~~~D~~G~VveGd~~~i~~~~e~W~F~R~~~~~~pn~~W~L~ei~~~ 188 (194) T 2cw9_A 114 IDNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRLLDISAS 188 (194) T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECEEECTTSCEEEECTTCCEEEEEEEEEEECTTCSCGGGCEEEEEEEEE T ss_pred CCCCEEEEEEEECCCEEEEEEEEEEEHHEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEHHC T ss_conf 143223688850883299999999920117779998842898873587899999973777898998899975201 No 2 >2fxt_A Import inner membrane translocase subunit TIM44; mitochondrial translocase, protein transport; 3.20A {Saccharomyces cerevisiae} SCOP: d.17.4.13 Probab=100.00 E-value=2.1e-36 Score=249.84 Aligned_cols=149 Identities=13% Similarity=0.225 Sum_probs=141.7 Q ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-HHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEEEHH Q ss_conf 2024577776612676798999999999999-999998427678999731899999999877764434982023662000 Q gi|254780815|r 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160 (232) Q Consensus 82 ~~~~~~~~~i~~~~~~Fd~~~Fl~gAk~af~-~I~~A~~~gD~~~L~~lls~~~~~~f~~~i~~r~~~~~~~~~~~v~i~ 160 (232) ++.+.+++.++++||+||..+|++|||.+|+ +|++||++||++.||+|||+++|+.|+.+|++|+++|.+++.++++|. T Consensus 35 te~~~~l~~ik~~Dp~Fd~~~Fl~~ak~~~~p~Il~Af~~gD~~~Lk~lls~~vy~~f~~~I~~r~~~g~~~~~~~l~I~ 114 (192) T 2fxt_A 35 TESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGRILDIR 114 (192) T ss_dssp CCSHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHBCHHHHHHHHHHHHHHHHTTEECCEEECCCE T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEEECCC T ss_conf 58999999999878999989999999999999999999837899999870699999999999999987985234650322 Q ss_pred HHHHHHHCCC--CCEEEEEEEEEEEEEEEEEC-CCCCEECCCCCCCEEEEEEEEEEECCCCCCCC----EEEEEEEC Q ss_conf 1245421134--64569999998887776676-89968057657848999999999618989986----68957632 Q gi|254780815|r 161 DMKIINASIE--ENTVYITIRIVGQFISASYD-KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLISTKL 230 (232) Q Consensus 161 ~~~i~~~~~~--~~~~~itV~F~~~~i~~~~d-~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~----W~L~~iq~ 230 (232) +++|.+++.. ++.+.++|+|.++||+|++| ++|+||+|+++++..++|+|||+|++++.||| |+|++.+- T Consensus 115 ~~~I~~a~~~~~~~~~~itV~F~a~qi~~~~~dk~G~IIeGd~~~i~~v~d~WtF~R~~~~~~pn~~~~W~LiE~~r 191 (192) T 2fxt_A 115 GVEIVSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEIAAGDEANILMSSYAMVFTRDPEQIDDDETEGWKILEFVR 191 (192) T ss_dssp EEEEEEEEEETTTTEEEEEEEEEECEEECCEETTTBTTSSCSCCCCCCEEEEEEEECCSSSCTTSSSTTCEEEEEEC T ss_pred CEEEEEEEEECCCCEEEEEEEEEEEEEEEEECCCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEEC T ss_conf 11789999744887089999999999999971788866538988636999999999867568988989989998306 No 3 >3cu3_A Domain of unknown function with A cystatin-like fold; ZP_00107529.1, structural genomics, joint center for structural genomics; 2.00A {Nostoc punctiforme pcc 73102} SCOP: d.17.4.28 Probab=92.25 E-value=0.32 Score=26.29 Aligned_cols=104 Identities=5% Similarity=0.079 Sum_probs=56.1 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCHHH------------HHHHHHHHHHHHHCC---CCCEEEEEEHHHHHHHHHCCC Q ss_conf 99999999999984276789997318999------------999998777644349---820236620001245421134 Q gi|254780815|r 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRV------------YQDFNDSLSTRKSNE---KNVKSSLVGIDDMKIINASIE 170 (232) Q Consensus 106 gAk~af~~I~~A~~~gD~~~L~~lls~~~------------~~~f~~~i~~r~~~~---~~~~~~~v~i~~~~i~~~~~~ 170 (232) ..+..|....+||+++|.+.+..+.+++. .+.+.+.+..+-... .........+. ... T Consensus 17 aI~al~~~~~~A~~~~D~d~~~~lfa~D~~~~~~~g~~~~G~e~i~~~~~~~~~~~~~~~~~~~~~~~i~-------~~~ 89 (172) T 3cu3_A 17 AIRAFHRQMIDAWNRGSGEGFAAPFSETADFITFEGTHLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVR-------FVN 89 (172) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCCEEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEE-------EEE T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEE-------EEC T ss_conf 9999999999999869989998763146400146754113688999999998602666734897303788-------865 Q ss_pred CCEEEEEEEEEEEEEEEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEC Q ss_conf 645699999988877766768996805765784899999999961898998668957632 Q gi|254780815|r 171 ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 (232) Q Consensus 171 ~~~~~itV~F~~~~i~~~~d~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~W~L~~iq~ 230 (232) ++.+.+...+... ... .+.+.........++|.|. +..|+++..+. T Consensus 90 ~D~A~~~~~~~~~----~~~------~~~~~~~~~~r~t~Vl~R~----dG~WrI~~~H~ 135 (172) T 3cu3_A 90 SQLALMLVVIRVI----LPG------QTETSASRDSLPLYVVTKG----DEGWQIEGLLN 135 (172) T ss_dssp TTEEEEEEEEEEE----CTT------CSSBCGGGCBCCEEEEEEE----TTEEEEEEEEC T ss_pred CCEEEEEEEEEEE----EEC------CCCCCCEEEEEEEEEEEEE----CCEEEEEEEEC T ss_conf 9579999999999----707------9988733779999999982----99899999863 No 4 >3k7c_A Putative NTF2-like transpeptidase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PGE; 2.00A {Campylobacter jejuni} Probab=88.73 E-value=1.2 Score=22.73 Aligned_cols=94 Identities=10% Similarity=0.283 Sum_probs=51.5 Q ss_pred HHHHHHHHHCCCHHHHHHHHC------HHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCCEEEEEEEEEEEE Q ss_conf 999999984276789997318------99999999877764434982023662000124542113464569999998887 Q gi|254780815|r 111 YEAIVDSFFEGKVHAIEKLVD------SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 (232) Q Consensus 111 f~~I~~A~~~gD~~~L~~lls------~~~~~~f~~~i~~r~~~~~~~~~~~v~i~~~~i~~~~~~~~~~~itV~F~~~~ 184 (232) .+...++..+||.+....|++ +.+-+.+...+...........-+..+|.+.++.++..+++.+.|+|.++. T Consensus 13 ak~f~~~l~~GD~e~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ggik~v~i~~~~~~~~~A~V~~~~~y-- 90 (114) T 3k7c_A 13 AKNFTKDLYSGDTKSVMSYIDLSEAKSDEEKTFVSDKITQVVAENAAKAKRMGGVKDIQIEEKTINKDSAKIRVLVLF-- 90 (114) T ss_dssp HHHHHHHHTTTCHHHHHHTBCCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEEECSSEEEEEEEEEE-- T ss_pred HHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEEEEEE-- T ss_conf 999999998289999985457765567789999999999988877766886289407999997732888999999997-- Q ss_pred EEEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCEEEE Q ss_conf 776676899680576578489999999996189899866895 Q gi|254780815|r 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 (232) Q Consensus 185 i~~~~d~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~W~L~ 226 (232) ||. ..-.+.|.+.| .+..|++. T Consensus 91 -------------~dg---t~~~~~v~lvk----~dg~Wkv~ 112 (114) T 3k7c_A 91 -------------NND---NNQSSNVFLAK----KDRKWLVL 112 (114) T ss_dssp -------------TTS---CEEEEEEEEEE----SSSSEEEC T ss_pred -------------CCC---CCEEEEEEEEE----ECCEEEEE T ss_conf -------------899---82688899899----99999998 No 5 >2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15 Probab=86.03 E-value=1.7 Score=21.75 Aligned_cols=103 Identities=13% Similarity=0.114 Sum_probs=55.9 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHCHHHHH--------HHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCCEEEEEEE Q ss_conf 99999999998427678999731899999--------9998777644349820236620001245421134645699999 Q gi|254780815|r 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQ--------DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 (232) Q Consensus 108 k~af~~I~~A~~~gD~~~L~~lls~~~~~--------~f~~~i~~r~~~~~~~~~~~v~i~~~~i~~~~~~~~~~~itV~ 179 (232) .+......+|+.+||.+.|..|++|++.- .-...++....... ........+ ..+...++.+.++.+ T Consensus 9 ~~l~~~~~~A~~~~D~~~l~~l~a~d~~~~~~~G~~~~~~~~i~~~~~~~~--~~~~~~~~~---~~v~~~gd~Av~~~~ 83 (123) T 2r4i_A 9 LDCEKKLLTAIQNNDVESLEVLLHDDLLFIIPSGETVTKETDIAAYSSGKI--ALRAVVPSD---YIIRIIHDTVVVSVN 83 (123) T ss_dssp THHHHHHHHHHHHTCHHHHHHHEEEEEEEECTTSCEECHHHHHHHHHTTCE--EEEEEEEEE---EEEEEETTEEEEEEE T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCEEEEHHHHHHHHHCCCC--CCCEEEEEE---EEEEEECCEEEEEEE T ss_conf 999999999998599999997468876999279909616999999864898--863689865---689983667899999 Q ss_pred EEEEEEEEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEC Q ss_conf 988877766768996805765784899999999961898998668957632 Q gi|254780815|r 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 (232) Q Consensus 180 F~~~~i~~~~d~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~W~L~~iq~ 230 (232) +..... .+|.... ...+..-+|.|. +..|+|+.-+. T Consensus 84 ~~~~~~-----~~g~~~~------~~~r~t~V~~k~----~G~Wkiv~~h~ 119 (123) T 2r4i_A 84 IEIKGE-----YMEHTLD------NTFRYLRVWKLF----DGNWKVIAGSC 119 (123) T ss_dssp EEEEEE-----ETTEEEE------EEEEEEEEEEEE----TTEEEEEEEEE T ss_pred EEEEEE-----CCCCCEE------EEEEEEEEEEEE----CCEEEEEEEEE T ss_conf 999983-----3997306------789999999999----99999999984 No 6 >3ksp_A Calcium/calmodulin-dependent kinase II association domain; structural genomics, joint center for structural genomics, JCSG; HET: MSE NHE; 2.59A {Exiguobacterium sibiricum 255-15} Probab=83.78 E-value=2.1 Score=21.11 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=57.3 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHCHHHHH--------HHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCCEEEEEEE Q ss_conf 99999999998427678999731899999--------9998777644349820236620001245421134645699999 Q gi|254780815|r 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQ--------DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 (232) Q Consensus 108 k~af~~I~~A~~~gD~~~L~~lls~~~~~--------~f~~~i~~r~~~~~~~~~~~v~i~~~~i~~~~~~~~~~~itV~ 179 (232) +..+.....|+.+||.+.|+.|+++++.- .-.+.|+.....+.. ..... ......+...++.+.++.. T Consensus 12 ~~l~~~~~~a~~~~d~~~l~~lladdf~~i~~sG~~~~k~~~l~~~~~~~~~-~~~~~---~~~~~~v~~~gd~Avv~~~ 87 (129) T 3ksp_A 12 QTLLSERHAYLMEGNREAMHQLLSSDFSFIDGQGRQFDAETYLDHYVDPDQI-QWSNQ---ISESMVVEVFETTALVQEI 87 (129) T ss_dssp HHHHHHHHHHHHHTCHHHHHHHEEEEEEEECTTCCEECHHHHHHHHSCTTTE-EEEEE---EEEEEEEEECSSEEEEEEE T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCC-CCCEE---CCCCEEEEEECCEEEEEEE T ss_conf 9999999999983899999976086659996999462348899976515764-30000---1221026885251799999 Q ss_pred EEEEEEEEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEC Q ss_conf 988877766768996805765784899999999961898998668957632 Q gi|254780815|r 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 (232) Q Consensus 180 F~~~~i~~~~d~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~W~L~~iq~ 230 (232) ...... . .|....+ ....+.+|.- .+..|+++.-|. T Consensus 88 ~~~~~~---~--~g~~~~~----~~r~t~Vw~k------~~g~Wk~~~hQ~ 123 (129) T 3ksp_A 88 VEDHFS---Y--GRSMYIG----RFRSVSLYHW------ANEGWKWHFHQL 123 (129) T ss_dssp EEEEEE---E--TTEEEEE----EEEEEEEEEE------ETTEEEEEEEEE T ss_pred EEEEEE---E--CCCCCCE----EEEEEEEEEE------ECCEEEEEEEEC T ss_conf 999998---5--5877534----7999999999------499789999827 No 7 >3h3h_A Uncharacterized snoal-like protein; YP_438428.1, snoal-like protein of unknown function, structural genomics; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264} Probab=83.69 E-value=2.1 Score=21.08 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=23.2 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 99999999999984276789997318999 Q gi|254780815|r 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 106 gAk~af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) .||+....-.+||+++|++.|-.++++++ T Consensus 9 ~a~~~~~~~~~a~n~~D~d~i~~~~aeD~ 37 (122) T 3h3h_A 9 FAQQFSREWIDAWNAHDLDAILSHYADGF 37 (122) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEE T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHCCCCE T ss_conf 99999999999997589678887377988 No 8 >3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10 Probab=82.17 E-value=0.38 Score=25.80 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=29.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHH Q ss_conf 999999999999999842767899973189999 Q gi|254780815|r 103 FLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 (232) Q Consensus 103 Fl~gAk~af~~I~~A~~~gD~~~L~~lls~~~~ 135 (232) =++-|+++|+...+||.+||++.+..++++++. T Consensus 10 ~~~~a~~~~e~f~~a~~~gD~e~~~~l~adD~~ 42 (134) T 3dmc_A 10 TLKVAHQGFEFFTQGLATGEWQKFLDMLTEDFT 42 (134) T ss_dssp HHHHHHHHHHHHHHHHHHSCCHHHHTTEEEEEE T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEE T ss_conf 699999999999999986898899987678579 No 9 >2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22 Probab=79.87 E-value=2.9 Score=20.21 Aligned_cols=101 Identities=9% Similarity=0.096 Sum_probs=55.0 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCHHHH---------HH---HHHHHHHHHHC-CCCCEEEEEEHHHHHHHHHCCCCCE Q ss_conf 99999999999842767899973189999---------99---99877764434-9820236620001245421134645 Q gi|254780815|r 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVY---------QD---FNDSLSTRKSN-EKNVKSSLVGIDDMKIINASIEENT 173 (232) Q Consensus 107 Ak~af~~I~~A~~~gD~~~L~~lls~~~~---------~~---f~~~i~~r~~~-~~~~~~~~v~i~~~~i~~~~~~~~~ 173 (232) -+..+....+||++||.+.|..+.+|+.. .. +.+.....-.. ......+ ...+.+...++. T Consensus 5 I~~l~~~~~~A~~~~D~d~l~~l~a~Dav~~~~~g~~~~G~~ai~~~~~~~~~~~~~~~~~~------~~~~~v~~~gD~ 78 (142) T 2gxf_A 5 LKDIISACDLAIQNEDFDTLMNYYSEDAVLVVKPGMIARGKEEIKKAFITIANYFNHHIVPT------QGKMILLEAGDT 78 (142) T ss_dssp HHHHHHHHHHHHHTTCHHHHTTSEEEEEEEECSSSCEEEHHHHHHHHHHHTTSCCCSSCCCE------EEEEEEEEETTE T ss_pred HHHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCCEECCHHHHHHHHHHHHHHCCCCEEEE------EEEEEEEECCCE T ss_conf 99999999999986999999973047808984899655278999999999987567752899------757999956996 Q ss_pred EEEEEEEEEEEEEEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCEEEEE Q ss_conf 699999988877766768996805765784899999999961898998668957 Q gi|254780815|r 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 (232) Q Consensus 174 ~~itV~F~~~~i~~~~d~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~W~L~~ 227 (232) ++++.++.... +..|.. .....+..++|.|. .|..|+++- T Consensus 79 A~v~~~~~~~~-----~~~g~~------~~~~gr~t~V~~r~---~DG~W~~~~ 118 (142) T 2gxf_A 79 VLVLSQTLLDS-----DKKDSE------YAMERRATYVFKKN---AQGEWLCVI 118 (142) T ss_dssp EEEEEEEECCC--------------------EEEEEEEEEEC---TTSCEEEEE T ss_pred EEEEEEEEEEE-----ECCCCC------EEEEEEEEEEEEEC---CCCCEEEEE T ss_conf 99999999998-----469984------77789999999999---999899999 No 10 >2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7 Probab=77.43 E-value=1.5 Score=22.00 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=23.6 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 999999999984276789997318999 Q gi|254780815|r 108 RNSYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 108 k~af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) ..+.+...+||.+||++.+..+++|++ T Consensus 15 ~~~~~~~~~A~~~~D~da~~~l~~~D~ 41 (143) T 2f86_B 15 VRVTQTLLDAISCKDFETYTRLCDTSM 41 (143) T ss_dssp HHHHHHHHHHHHHTCHHHHHHHEEEEE T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCC T ss_conf 999999999998589989985218998 No 11 >3bb9_A Putative orphan protein; YP_750657.1, putative ketosteroid isomerase, structural genomics; HET: MSE; 1.80A {Shewanella frigidimarina ncimb 400} SCOP: d.17.4.16 Probab=76.35 E-value=3.7 Score=19.56 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=23.1 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 9999999999984276789997318999 Q gi|254780815|r 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 107 Ak~af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) +..+......||.+||.+.+..|+++++ T Consensus 32 i~~v~~~~~~A~~~gD~d~~~~l~a~D~ 59 (148) T 3bb9_A 32 AGNVVKQFHAALQMGNEAIVRQSLAANV 59 (148) T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHEEEEE T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCC T ss_conf 9999999999998489999998708985 No 12 >2owp_A Hypothetical protein BXE_B1374; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Burkholderia xenovorans LB400} SCOP: d.17.4.18 Probab=76.22 E-value=3.7 Score=19.54 Aligned_cols=31 Identities=10% Similarity=0.238 Sum_probs=25.3 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHCHH Q ss_conf 9999999999999998427678999731899 Q gi|254780815|r 103 FLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 (232) Q Consensus 103 Fl~gAk~af~~I~~A~~~gD~~~L~~lls~~ 133 (232) =....+.++....+||..||++.|..+.+++ T Consensus 9 ~~aeV~a~~~~~~~A~~~~D~~al~al~~~d 39 (129) T 2owp_A 9 IVAQVQAAFVEYERALVENDIEAMNALFWHT 39 (129) T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHTBCCS T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC T ss_conf 9999999999999999808999999864169 No 13 >3ehc_A Snoal-like polyketide cyclase; 17741376, structural genomics, joint center for structural genomics, JCSG; 2.12A {Agrobacterium tumefaciens str} Probab=74.31 E-value=3.1 Score=20.04 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=24.3 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 99999999999984276789997318999 Q gi|254780815|r 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 106 gAk~af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) .++..|....+||+++|.+.+..|++|++ T Consensus 4 ~~~~~~~~y~~a~n~~d~d~~~~~~~~dv 32 (128) T 3ehc_A 4 TLNDIYLAYLDSLNHQAFDELGTFVDDNV 32 (128) T ss_dssp CHHHHHHHHHHHHHTTCGGGGGGTEEEEE T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHCCCCE T ss_conf 39999999999983589999986727765 No 14 >3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti} Probab=70.01 E-value=5.2 Score=18.61 Aligned_cols=102 Identities=7% Similarity=0.084 Sum_probs=55.6 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCHHHH------------HHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCCE Q ss_conf 999999999999842767899973189999------------99998777644349820236620001245421134645 Q gi|254780815|r 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVY------------QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 (232) Q Consensus 106 gAk~af~~I~~A~~~gD~~~L~~lls~~~~------------~~f~~~i~~r~~~~~~~~~~~v~i~~~~i~~~~~~~~~ 173 (232) .-+.++....+||+.+|.+.+..+.+|+.. +.+.+-....-..+.. ... .+...+...++. T Consensus 7 aI~~~~~~~~~A~~~~D~~~~~~l~~~d~~~~~~~~~~~~G~e~i~~~~~~~~~~~~~-~~~------~~~~~i~~~gd~ 79 (129) T 3hx8_A 7 AIEAANADFVKAYNSKDAAGVASKYMDDAAAFPPDMARVDGRQNIQKLWQGAMDMGIS-ELK------LTTLDVQESGDF 79 (129) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTSCCEESHHHHHHHHHHHHHTTCE-EEE------EEEEEEEEETTE T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCCEEECHHHHHHHHHHHHHCCCC-CEE------EEEEEEEECCCE T ss_conf 9999999999999858999999861898389879983676789999999998732886-169------852677851885 Q ss_pred EEEEEEEEEEEEEEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCEEEEE Q ss_conf 699999988877766768996805765784899999999961898998668957 Q gi|254780815|r 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 (232) Q Consensus 174 ~~itV~F~~~~i~~~~d~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~W~L~~ 227 (232) +.++-++... .++++|..+. ..-+.+.+|.|. .|..|++.. T Consensus 80 A~~~~~~~~~----~~~~~g~~~~------~~g~~~~v~~k~---~dG~Wki~~ 120 (129) T 3hx8_A 80 AFESGSFSLK----APGKDSKLVD------AAGKYVVVWRKG---QDGGWKLYR 120 (129) T ss_dssp EEEEEEEEEE----EECTTSCEEE------EEEEEEEEEEEC---TTSCEEEEE T ss_pred EEEEEEEEEE----EECCCCCCEE------EEEEEEEEEEEC---CCCCEEEEE T ss_conf 8999999999----7268886235------669999999997---899699999 No 15 >2ux0_A Calcium-calmodulin dependent protein kinase (CAM kinase) II gamma; transferase, oligomerisation domain, serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A* Probab=69.60 E-value=5.3 Score=18.55 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=24.8 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCHHHH Q ss_conf 999999999999842767899973189999 Q gi|254780815|r 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 (232) Q Consensus 106 gAk~af~~I~~A~~~gD~~~L~~lls~~~~ 135 (232) .-..+.....+||.+||.+.+..+++|+.. T Consensus 14 eI~~~~~~~~~A~~~~D~~~~~~l~~~d~~ 43 (143) T 2ux0_A 14 EIIKITEQLIEAINNGDFEAYTKICDPGLT 43 (143) T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEE T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCCCCC T ss_conf 999999999999984999999986368950 No 16 >2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9 Probab=65.71 E-value=1.5 Score=22.01 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=23.8 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 99999999999984276789997318999 Q gi|254780815|r 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 106 gAk~af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) .-|+......+||+++|++.|..+++|++ T Consensus 5 ~~k~lv~~~~~Awn~~D~~~l~~~~apD~ 33 (158) T 2gey_A 5 ERKALCLEMVAAWNRWDLSGIIKHWSPDI 33 (158) T ss_dssp HHHHHHHHHHHHHHTTCTHHHHTTEEEEE T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHCCCCE T ss_conf 99999999999997689999998709998 No 17 >3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides} Probab=63.55 E-value=6.9 Score=17.81 Aligned_cols=104 Identities=6% Similarity=-0.009 Sum_probs=54.0 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCHHH------------HHHHHHHHHHHHHC---CCCCEEEEEEHHHHHHHHHCCCC Q ss_conf 9999999999984276789997318999------------99999877764434---98202366200012454211346 Q gi|254780815|r 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRV------------YQDFNDSLSTRKSN---EKNVKSSLVGIDDMKIINASIEE 171 (232) Q Consensus 107 Ak~af~~I~~A~~~gD~~~L~~lls~~~------------~~~f~~~i~~r~~~---~~~~~~~~v~i~~~~i~~~~~~~ 171 (232) -+..+.....||+++|.+.+..+.+++. .+.+.....+.-.. +.........+ ..+.+ T Consensus 8 I~~ll~~y~~A~~~~D~d~~~~l~~~d~~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~v-------~~~~~ 80 (146) T 3gzr_A 8 IQALIQAYFTAWNTNAPERFAEIFWPDGSWVNVVGMHWRGRDQIVFAHTAFLKTIFKDCKQELVTIEA-------RTIAP 80 (146) T ss_dssp HHHHHHHHHHHHHTTCGGGSGGGEEEEEEEECTTCCEEESHHHHHHHHHHHHHTTTTTCCEEEEEEEE-------EEEET T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEECCCCEEECHHHHHHHHHHHHHHCCCCEEEEEEEEEE-------EEECC T ss_conf 99999999999986899999987404825993899877678899999999863046524999975789-------99737 Q ss_pred CEEEEEEEEEEEEEEEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEE Q ss_conf 4569999998887776676899680576578489999999996189899866895763 Q gi|254780815|r 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 (232) Q Consensus 172 ~~~~itV~F~~~~i~~~~d~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~W~L~~iq 229 (232) +.+.+.+++.... ..+.. |.+.........|+|.|. +..|+++..+ T Consensus 81 d~A~~~~~~~~~~---~~~~~-----~~~~~~~~~~~t~v~~k~----~g~Wkiv~~H 126 (146) T 3gzr_A 81 GSALAVVTLIQDA---YVTPD-----GRQMPRAHDRLTLLAVER----EGVWRFIHGH 126 (146) T ss_dssp TEEEEEEEEEECC---EECTT-----CCEECCEEEEEEEEEEEE----TTEEEEEEEE T ss_pred CEEEEEEEEEEEE---EECCC-----CCCCCCEEEEEEEEEEEE----CCEEEEEEEE T ss_conf 1689999999987---50689-----973332379999999998----9999999988 No 18 >3ebt_A Uncharacterized NTF2-like protein; YP_110153.1, NTF2-like protein of unknown function, structural genomics; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9 Probab=60.33 E-value=7.9 Score=17.44 Aligned_cols=28 Identities=7% Similarity=0.146 Sum_probs=23.7 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 9999999999984276789997318999 Q gi|254780815|r 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 107 Ak~af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) .++......+||+++|.+.+..+++|++ T Consensus 5 n~~~v~~~~~a~~~~D~~~~~~~~~dD~ 32 (132) T 3ebt_A 5 NMQTVRESYEAFHRRDLPGVLAALAPDV 32 (132) T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEE T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCE T ss_conf 9999999999998689989998618666 No 19 >3fh1_A Uncharacterized NTF2-like protein; NP_108339.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.60A {Mesorhizobium loti} Probab=60.11 E-value=2.7 Score=20.46 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=24.5 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 9999999999984276789997318999 Q gi|254780815|r 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 107 Ak~af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) +++......+||+.||++.+..|++|++ T Consensus 19 ~~eiv~~~~~A~~~~D~da~~~l~a~D~ 46 (129) T 3fh1_A 19 TAEIMRRFNDVFQLHDPAALPELIAEEC 46 (129) T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHEEEEE T ss_pred HHHHHHHHHHHHHCCCHHHHHHHCCCCE T ss_conf 9999999999998479999998608766 No 20 >2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9 Probab=57.94 E-value=2 Score=21.18 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=21.5 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 999999999984276789997318999 Q gi|254780815|r 108 RNSYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 108 k~af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) |+......+||+++|++.+..+++|++ T Consensus 7 ~~~v~~~~~awn~~D~~~~~~~~~pd~ 33 (152) T 2gex_A 7 KERCLEMVAAWNRWDVSGVVAHWAPDV 33 (152) T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEE T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCE T ss_conf 999999999995489999998708662 No 21 >3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406} Probab=56.48 E-value=2.7 Score=20.45 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=22.0 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 999999999984276789997318999 Q gi|254780815|r 108 RNSYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 108 k~af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) |..-....+||+++|++.+..||++++ T Consensus 9 ~~lv~~y~~A~~~~D~d~~~~llaeD~ 35 (114) T 3f40_A 9 RDLVLEFIHALNTENFPAAKKRLNENF 35 (114) T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEE T ss_pred HHHHHHHHHHHHCCCHHHHHHHHCCCE T ss_conf 999999999987339999998613577 No 22 >1s5a_A Hypothetical protein YESE; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus subtilis} SCOP: d.17.4.10 Probab=56.16 E-value=4.4 Score=19.09 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=26.7 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 9999999999999984276789997318999 Q gi|254780815|r 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 104 l~gAk~af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) ++.++..+....+|+.++|++.+..|+++++ T Consensus 9 ~~~~~e~v~~~~~a~~~~D~~~~~~l~~~D~ 39 (150) T 1s5a_A 9 FEKACETLRKFMAYMLEKDMKSWTELWDENA 39 (150) T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHTTEEEEE T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHCCCCE T ss_conf 7999999999999998389999998528977 No 23 >2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29 Probab=55.49 E-value=4.2 Score=19.16 Aligned_cols=28 Identities=4% Similarity=0.044 Sum_probs=24.0 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 9999999999984276789997318999 Q gi|254780815|r 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 107 Ak~af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) .+..-.+..+||+++|++.+..+++|++ T Consensus 5 ~e~~V~~~~~A~n~~D~d~~~~~~a~D~ 32 (123) T 2k54_A 5 IELPVQKQLEAYNARDIDAFMAWWADDC 32 (123) T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEE T ss_pred HHHHHHHHHHHHHCCCHHHHHHHCCCCE T ss_conf 8999999999997779999997538875 No 24 >3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structural genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20 Probab=55.44 E-value=3.1 Score=20.07 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=25.0 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 999999999999984276789997318999 Q gi|254780815|r 105 NEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 105 ~gAk~af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) +..|+......+||++||++.+..|+++++ T Consensus 5 e~~keiv~~~~~A~~~~D~d~~~~l~~dD~ 34 (128) T 3en8_A 5 EKIREALNAHWQASAAGDFDAEHDIYDDDA 34 (128) T ss_dssp HHHHHHHHHHHHHHHHTCHHHHTTTEEEEE T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCE T ss_conf 999999999999998589999998616888 No 25 >3g0k_A Putative membrane protein; YP_498150.1, protein of unknown function with A cystatin- like fold; HET: MSE; 1.30A {Novosphingobium aromaticivorans DSM12444} Probab=54.13 E-value=10 Score=16.79 Aligned_cols=25 Identities=8% Similarity=0.115 Sum_probs=19.5 Q ss_pred HHHHHHHHHCCCHHHHHHHHCHHHH Q ss_conf 9999999842767899973189999 Q gi|254780815|r 111 YEAIVDSFFEGKVHAIEKLVDSRVY 135 (232) Q Consensus 111 f~~I~~A~~~gD~~~L~~lls~~~~ 135 (232) -+...++|+++|++.|..|++|++. T Consensus 34 ~~fy~~~~n~~D~~al~~~~a~d~v 58 (148) T 3g0k_A 34 IEMYNKVLIAMDSSAVDRYIAPGYV 58 (148) T ss_dssp HHHHHHTTTTTCGGGGGGTEEEEEE T ss_pred HHHHHHHHHCCCHHHHHHHHCCCEE T ss_conf 9999999975899999987097858 No 26 >3h51_A Putative calcium/calmodulin dependent protein kinase II association domain; NP_636218.1, structural genomics; HET: MSE PG4; 1.70A {Xanthomonas campestris PV} Probab=50.41 E-value=11 Score=16.42 Aligned_cols=101 Identities=7% Similarity=0.132 Sum_probs=52.1 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCHHH--H-----------HHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCCE Q ss_conf 9999999999984276789997318999--9-----------99998777644349820236620001245421134645 Q gi|254780815|r 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRV--Y-----------QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 (232) Q Consensus 107 Ak~af~~I~~A~~~gD~~~L~~lls~~~--~-----------~~f~~~i~~r~~~~~~~~~~~v~i~~~~i~~~~~~~~~ 173 (232) .++.+....+||++||.+.+..+.+|+. + +.+..-................. .. ...++. T Consensus 22 I~al~~~~~~A~~~~D~d~~~al~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---v~----~~~~d~ 94 (156) T 3h51_A 22 VAALFDTWNAALATGNPHKVADLYAPDGVLLPTVSNEVRASREQIENYFEMFLTKKPKGVINYRT---VR----LLDDDS 94 (156) T ss_dssp HHHHHHHHHHHHHHTCHHHHHTTEEEEEEEECSSCSSCBCSHHHHHHHHHHHGGGCCEEEEEEEE---EE----ECSSSE T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCCEEECCCCCCEECCHHHHHHHHHHHHHCCCCEEEECCE---EE----EECCCC T ss_conf 99999999999986899999974056847962789840068899988988764128725970334---89----964873 Q ss_pred EEEEEEEEEEEEEEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCEEEEEE Q ss_conf 6999999888777667689968057657848999999999618989986689576 Q gi|254780815|r 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 (232) Q Consensus 174 ~~itV~F~~~~i~~~~d~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~W~L~~i 228 (232) +.++..+.... ...+|.. .. ...+..++|.|. +..|+++.. T Consensus 95 A~~~~~~~~~~----~~~~g~~-----~~-~~~R~t~v~~K~----dG~WkI~~~ 135 (156) T 3h51_A 95 AVDAGVYTFTL----TDKNGKK-----SD-VQARYTFVYEKR----DGKWLIINH 135 (156) T ss_dssp EEEEEEEEEEE----ECTTSCE-----EE-EEEEEEEEEEEE----TTEEEEEEE T ss_pred EEEEEEEEEEE----ECCCCCC-----CE-EEEEEEEEEEEE----CCEEEEEEE T ss_conf 48999999997----2378986-----36-899999999998----998899999 No 27 >3g8z_A Protein of unknown function with cystatin-like fold; NP_639274.1, snoal-like polyketide cyclase, structural genomics; HET: MSE; 1.90A {Xanthomonas campestris PV} Probab=50.03 E-value=3.6 Score=19.60 Aligned_cols=27 Identities=7% Similarity=0.209 Sum_probs=22.4 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 999999999984276789997318999 Q gi|254780815|r 108 RNSYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 108 k~af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) +.......+||.++|++.+..|++|++ T Consensus 23 ~eiv~~~~~A~~~~D~e~~~~l~a~Dv 49 (148) T 3g8z_A 23 IDIAKSYITAIQTGDHATLGSIISPDV 49 (148) T ss_dssp HHHHHHHHHHHHHTCHHHHHHHEEEEE T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCE T ss_conf 999999999998489999998559988 No 28 >1nww_A Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {Rhodococcus erythropolis} SCOP: d.17.4.8 PDB: 1nu3_A* Probab=47.69 E-value=6.4 Score=18.05 Aligned_cols=27 Identities=4% Similarity=0.053 Sum_probs=22.7 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHCHHHH Q ss_conf 999999999842767899973189999 Q gi|254780815|r 109 NSYEAIVDSFFEGKVHAIEKLVDSRVY 135 (232) Q Consensus 109 ~af~~I~~A~~~gD~~~L~~lls~~~~ 135 (232) +..+.+.+||+++|.+.+..|++|++. T Consensus 26 ~iv~~~~~A~~~~D~~~~~~~~a~D~~ 52 (149) T 1nww_A 26 KIVLEFMDALTSNDAAKLIEYFAEDTM 52 (149) T ss_dssp HHHHHHHHHGGGCCHHHHHTTBCSSCE T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCEE T ss_conf 999999999875699999987078779 No 29 >3fgy_A Uncharacterized NTF2-like protein; YP_554211.1, NTF2-like protein of unknown function., structural genomics; HET: MSE; 1.59A {Burkholderia xenovorans LB400} Probab=46.20 E-value=5.2 Score=18.60 Aligned_cols=28 Identities=4% Similarity=0.030 Sum_probs=22.9 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHCHHHH Q ss_conf 9999999999842767899973189999 Q gi|254780815|r 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 (232) Q Consensus 108 k~af~~I~~A~~~gD~~~L~~lls~~~~ 135 (232) ++..+...+||.+||++.+..+++|++. T Consensus 8 ~~~v~~~~~a~~~~D~d~~~~~~~~D~~ 35 (135) T 3fgy_A 8 VQIVKDFFAAMGRGDKKGLLAVSAEDIE 35 (135) T ss_dssp HHHHHHHHHHHHHTCHHHHHHTEEEEEE T ss_pred HHHHHHHHHHHHCCCHHHHHHHHCCCEE T ss_conf 9999999999985899999987185748 No 30 >3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10 Probab=44.97 E-value=4.7 Score=18.86 Aligned_cols=28 Identities=4% Similarity=-0.148 Sum_probs=23.2 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 9999999999984276789997318999 Q gi|254780815|r 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 107 Ak~af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) +++.......||+++|++.+..+++|++ T Consensus 14 ~~~iV~~~~~A~~~~D~~~~~~~la~D~ 41 (140) T 3ec9_A 14 PYQIVADHYAASDRHDPAAMMADIAPAI 41 (140) T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEE T ss_pred HHHHHHHHHHHHHCCCHHHHHHHCCCCC T ss_conf 9999999999998649989998629762 No 31 >3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein, structural genomics center for structural genomics, JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis} SCOP: d.17.4.17 Probab=44.36 E-value=14 Score=15.83 Aligned_cols=109 Identities=15% Similarity=0.133 Sum_probs=54.5 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCH---------------------------------HHHHHHHHHHHHHHHCCC Q ss_conf 99999999999999842767899973189---------------------------------999999987776443498 Q gi|254780815|r 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDS---------------------------------RVYQDFNDSLSTRKSNEK 150 (232) Q Consensus 104 l~gAk~af~~I~~A~~~gD~~~L~~lls~---------------------------------~~~~~f~~~i~~r~~~~~ 150 (232) .+....+-+..-+||.+||++.+..+-++ ++.+.|..-.. ... T Consensus 11 ~~~v~~a~~afy~A~~~~D~~~m~alw~~~~~~~~~~~~~~~~~~d~v~cvhPgg~~~~G~~ai~~~w~~~~~----~~~ 86 (170) T 3cnx_A 11 VEQVGLANTAFYEAMERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPGWPVLSGRGEVLRSYALIMA----NTE 86 (170) T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHBCCHHHHTC------CCCTTCCEEECTTCCEEEHHHHHHHHHHHHHH----TCS T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHC----CCC T ss_conf 9999999999999998089999997514654433344444544557448878998643599999999999963----577 Q ss_pred CCEEEEEEHHHHHHHHHCCCCCEEEEEEEEEEEEEEEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEE Q ss_conf 2023662000124542113464569999998887776676899680576578489999999996189899866895763 Q gi|254780815|r 151 NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 (232) Q Consensus 151 ~~~~~~v~i~~~~i~~~~~~~~~~~itV~F~~~~i~~~~d~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~W~L~~iq 229 (232) ...++.. .+.+...++.++++..-.... .....+....+.+.....+.-..+|.|. +..|+|+.-+ T Consensus 87 ~~~~~~~------~v~v~v~gD~A~v~~~e~v~~---~~~~~~~~~~~g~~~~~~~r~T~Vfrr~----dg~WkivhhH 152 (170) T 3cnx_A 87 YIQFFLT------DVHVSVTGDTALVTCTENILS---GGPPPDDSDELGPLVGQLVVATNVFRRT----PDGWKLWSHH 152 (170) T ss_dssp EEEEEEE------EEEEEEETTEEEEEEEEEEEE---EC---------CCCEEEEEEEEEEEECC----TTCCEEEEEE T ss_pred CCCCEEE------CCEEEEECCEEEEEEEEEEEE---CCCCCCCCCCCCCCCCEEEEEEEEEEEE----CCEEEEEEEC T ss_conf 6531443------156999687899999999873---2555554356776444279999999997----9979999984 No 32 >3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27 Probab=43.88 E-value=14 Score=15.78 Aligned_cols=102 Identities=5% Similarity=0.089 Sum_probs=51.7 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHCHHHH------------HHHHHHHHHHHHCCC-CCEEEEEEHHHHHHHHHCCCCCEE Q ss_conf 9999999999842767899973189999------------999987776443498-202366200012454211346456 Q gi|254780815|r 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVY------------QDFNDSLSTRKSNEK-NVKSSLVGIDDMKIINASIEENTV 174 (232) Q Consensus 108 k~af~~I~~A~~~gD~~~L~~lls~~~~------------~~f~~~i~~r~~~~~-~~~~~~v~i~~~~i~~~~~~~~~~ 174 (232) ++++.....||+++|.+.+..+.+++.. +.+.+.....-.... ...... ..+ ..+.++.+ T Consensus 14 ~~~~~~y~~A~~~~D~~~~~~l~t~D~v~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~d~A 86 (135) T 3d9r_A 14 EAAAIAYLTAFNRADIPAVIATYTDDGVLMGPGRPAAVGKDELAEVYLSVFETVGFDMAYEI-----KEV--VQTSADWA 86 (135) T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTSCCEESHHHHHHHHHHHHHHEEEEEEEEE-----EEE--EEEETTEE T ss_pred HHHHHHHHHHHHCCCHHHHHHHHCCCCEEECCCCCEEECHHHHHHHHHHHHHCCCCEEEEEE-----EEE--EEECCCEE T ss_conf 99999999999869999999873346257547995670789999999999840873158850-----026--86169989 Q ss_pred EEEEEEEEEEEEEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCEEEEEE Q ss_conf 999999888777667689968057657848999999999618989986689576 Q gi|254780815|r 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 (232) Q Consensus 175 ~itV~F~~~~i~~~~d~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~W~L~~i 228 (232) .+...+..... .+..|. ..+.....+..|.|. .|..|+++.- T Consensus 87 ~~~~~~~~~~~---~~~~~~------~~~~~~~~~~v~~r~---~dG~Wki~~~ 128 (135) T 3d9r_A 87 FVRSATEGTET---NKATGV------VTPAAYQELFLLRKS---ATGSWQTARY 128 (135) T ss_dssp EEEEEEEEEEE---ETTTCC------EEEEEEEEEEEEEEC---TTSCEEEEEE T ss_pred EEEEEEEEEEE---ECCCCC------EEEEEEEEEEEEEEC---CCCCEEEEEE T ss_conf 99999999999---859995------065207999999998---9995999997 No 33 >3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406} Probab=42.49 E-value=2.3 Score=20.84 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=22.0 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 999999999984276789997318999 Q gi|254780815|r 108 RNSYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 108 k~af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) +.....|++||++||++.+..++++++ T Consensus 3 e~~~~~~~~~f~~gD~~~~~~~~~dDv 29 (112) T 3f14_A 3 ETTHYSIAQHFSSGDFPAVYACFNDII 29 (112) T ss_dssp HHHHHHHHHHHHTTCGGGTGGGEEEEE T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCE T ss_conf 148999999998789999998659989 No 34 >2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8 Probab=42.43 E-value=9.2 Score=17.04 Aligned_cols=29 Identities=10% Similarity=0.237 Sum_probs=24.1 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCHHHH Q ss_conf 99999999999842767899973189999 Q gi|254780815|r 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 (232) Q Consensus 107 Ak~af~~I~~A~~~gD~~~L~~lls~~~~ 135 (232) +....+....||.+||++.+..|+++++. T Consensus 17 n~~vV~~~~~A~~~~D~d~~~~l~aeD~~ 45 (149) T 2bng_A 17 AIRAVEAFLNALQNEDFDTVDAALGDDLV 45 (149) T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHEEEEEE T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCEE T ss_conf 99999999999875899999987188869 No 35 >3f7x_A Putative polyketide cyclase; NP_743055.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.24A {Pseudomonas putida KT2440} Probab=41.97 E-value=5.7 Score=18.36 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=21.1 Q ss_pred HHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 9999999984276789997318999 Q gi|254780815|r 110 SYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 110 af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) ..+...+||+.+|.+.+..+++|++ T Consensus 25 iv~~~~~A~n~~D~~~l~~~~a~Dv 49 (151) T 3f7x_A 25 LVNAYYAAFNAGDMPAFLALLSEDV 49 (151) T ss_dssp HHHHHHHHHHHTCHHHHHHTEEEEE T ss_pred HHHHHHHHHHCCCHHHHHHHCCCCE T ss_conf 9999999998789999998469988 No 36 >3i0y_A Putative polyketide cyclase; NP_635776.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.50A {Xanthomonas campestris PV} Probab=41.79 E-value=6.7 Score=17.90 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=23.5 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 999999999999984276789997318999 Q gi|254780815|r 105 NEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 105 ~gAk~af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) +.++...+...+||+++|++.+..++++++ T Consensus 8 ~~~~~li~~~~~a~~~~D~~~~~~~~~~D~ 37 (140) T 3i0y_A 8 QRATGLVQAYYEAFNRGDWDAMLAFLAEDV 37 (140) T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHTEEEEE T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHCCCCE T ss_conf 799999999999998789999998628785 No 37 >3k0z_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: NHE; 1.91A {Bacillus cereus atcc 10987} Probab=41.66 E-value=7.3 Score=17.68 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=20.5 Q ss_pred HHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 9999999984276789997318999 Q gi|254780815|r 110 SYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 110 af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) +..+..+||++||++.|..+++|++ T Consensus 39 ~a~~~~~awn~gd~~~i~~l~a~d~ 63 (159) T 3k0z_A 39 AAQRFYAFWDTGKEELIPQTVTENF 63 (159) T ss_dssp HHHHHHHHHHHCCGGGHHHHEEEEE T ss_pred HHHHHHHHHHCCCHHHHHHHCCCCE T ss_conf 9999999986699999998618789 No 38 >3f9s_A Putative polyketide cyclase; AFE_2539, structural genomics, joint center for structural genomics, JCSG; 1.76A {Acidithiobacillus ferrooxidans ATCC23270} Probab=40.72 E-value=16 Score=15.47 Aligned_cols=27 Identities=15% Similarity=0.357 Sum_probs=19.7 Q ss_pred HHHHHHH-HHHHHCCCHHHHHHHHCHHH Q ss_conf 9999999-99984276789997318999 Q gi|254780815|r 108 RNSYEAI-VDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 108 k~af~~I-~~A~~~gD~~~L~~lls~~~ 134 (232) |+..... .++|+++|.+.+..|++|++ T Consensus 9 k~~V~~~~~~~~n~~d~~~~~~~~a~d~ 36 (146) T 3f9s_A 9 KEILTQFTREVWSEGNIEASDKYIAPKY 36 (146) T ss_dssp HHHHHHHHHHHTTTCCGGGHHHHEEEEE T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCE T ss_conf 9999999999986799999998728888 No 39 >1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 1ogz_A* 3m8c_A* 1buq_A* Probab=40.41 E-value=9.2 Score=17.02 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=23.5 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 9999999999984276789997318999 Q gi|254780815|r 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 107 Ak~af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) .++..+....||..+|++.+..++++++ T Consensus 7 ~~~~v~~~~~a~~~~D~~~~~~~~a~D~ 34 (125) T 1ohp_A 7 MTAVVQRYVAALNAGDLDGIVALFADDA 34 (125) T ss_dssp HHHHHHHHHHHHHHTCHHHHHTTEEEEE T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCC T ss_conf 9999999999987699999999727785 No 40 >3ff2_A Uncharacterized cystatin fold protein (YP_497570.1) from NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans DSM12444} Probab=38.24 E-value=7 Score=17.80 Aligned_cols=28 Identities=7% Similarity=0.154 Sum_probs=22.6 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHCHHHH Q ss_conf 9999999999842767899973189999 Q gi|254780815|r 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 (232) Q Consensus 108 k~af~~I~~A~~~gD~~~L~~lls~~~~ 135 (232) ++..+...+||+++|++.+..++++++. T Consensus 5 ~e~v~~~~~A~n~~D~d~~~~~~adD~~ 32 (117) T 3ff2_A 5 LETAKAMIAAYNAQDVDTYVSYMTDDAC 32 (117) T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEE T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCEE T ss_conf 9999999999986699999975366669 No 41 >3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, protein structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20 Probab=38.17 E-value=5.6 Score=18.42 Aligned_cols=27 Identities=7% Similarity=0.228 Sum_probs=22.1 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 999999999984276789997318999 Q gi|254780815|r 108 RNSYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 108 k~af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) +.....+.+|++++|++.+..++++++ T Consensus 7 ~~~~r~~y~A~~~~d~d~~~~l~~dDv 33 (143) T 3dm8_A 7 WRFSRALHRALNDRQTEELATIIDDNI 33 (143) T ss_dssp HHHHHHHHHHHHHCCCHHHHHHEEEEE T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCE T ss_conf 999999999986479999998648865 No 42 >2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18 Probab=37.56 E-value=18 Score=15.16 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=29.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHH Q ss_conf 6798999999999999999998427678999731899 Q gi|254780815|r 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 (232) Q Consensus 97 ~Fd~~~Fl~gAk~af~~I~~A~~~gD~~~L~~lls~~ 133 (232) +=+..+=+.....++....+||..||++.|..|.+++ T Consensus 6 ~~~~~~~~aeI~~a~~~y~~A~~~~D~~~l~~l~~~d 42 (129) T 2rcd_A 6 DVNQADVLADVTAAFYRYEKALTGNDVAVLDELFWHD 42 (129) T ss_dssp GBCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHBCCS T ss_pred HCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC T ss_conf 6688769999999999999999839999999875079 No 43 >3fsd_A NTF2-like protein of unknown function in nutrient uptake; YP_427473.1, structural genomics; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} Probab=35.62 E-value=19 Score=14.97 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=20.2 Q ss_pred HHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 99999984276789997318999 Q gi|254780815|r 112 EAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 112 ~~I~~A~~~gD~~~L~~lls~~~ 134 (232) +.+.+|+..+|.+.|..|++|++ T Consensus 21 e~~~~A~~~~D~~~l~~l~add~ 43 (134) T 3fsd_A 21 ERLRAAMLTGDLKGLETLLADDL 43 (134) T ss_dssp HHHHHHHHHTCHHHHHHHEEEEE T ss_pred HHHHHHHHCCCHHHHHHHHCCCE T ss_conf 99999998589999998641887 No 44 >2f99_A Aklanonic acid methyl ester cyclase, AKNH; anthracycline,polyketide cyclase,stereoselectivity, aklavinone, biosynthetic protein; HET: AKV; 1.90A {Streptomyces galilaeus} SCOP: d.17.4.9 PDB: 2f98_A* Probab=35.24 E-value=4.5 Score=18.99 Aligned_cols=29 Identities=10% Similarity=0.289 Sum_probs=23.6 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCHHHH Q ss_conf 99999999999842767899973189999 Q gi|254780815|r 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 (232) Q Consensus 107 Ak~af~~I~~A~~~gD~~~L~~lls~~~~ 135 (232) ..++.....+||++||.+.+..|++|++. T Consensus 13 ~~a~Vr~~~~a~n~gd~d~l~~~~~~d~v 41 (153) T 2f99_A 13 QIAAVRRMVEAYNTGKTDDVADYIHPEYM 41 (153) T ss_dssp HHHHHHHHHHHHHHCCCTTGGGTEEEEEE T ss_pred HHHHHHHHHHHHHCCCHHHHHHHCCCCEE T ss_conf 99999999999985999899986599879 No 45 >3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens cn-32} PDB: 3lza_A* Probab=35.06 E-value=16 Score=15.54 Aligned_cols=25 Identities=8% Similarity=0.062 Sum_probs=20.4 Q ss_pred HHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 9999999984276789997318999 Q gi|254780815|r 110 SYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 110 af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) ......+||+++|.+.|..|+++++ T Consensus 25 l~~~~~~a~~~~D~~~l~~~~a~D~ 49 (154) T 3gzb_A 25 LAVKYMDALTEHDYKTLITFYNRDS 49 (154) T ss_dssp HHHHHHHHHHTTCHHHHHTTCCTTC T ss_pred HHHHHHHHHHHCCHHHHHHHCCCCE T ss_conf 9999999873429999987506656 No 46 >2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis} Probab=34.99 E-value=16 Score=15.42 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=11.8 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 2699999999999999 Q gi|254780815|r 9 GDFLILLFAFITFFVF 24 (232) Q Consensus 9 ~~i~Iii~A~IA~fl~ 24 (232) +..+|+++++||.++| T Consensus 6 G~~ElliI~vvallvf 21 (78) T 2l16_A 6 GIPGLILIFVIALIIF 21 (78) T ss_dssp CHHHHHHHHHHHHHHS T ss_pred CHHHHHHHHHHHHHEE T ss_conf 8999999999986316 No 47 >1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ... Probab=32.67 E-value=12 Score=16.39 Aligned_cols=28 Identities=11% Similarity=0.170 Sum_probs=23.4 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 9999999999984276789997318999 Q gi|254780815|r 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 107 Ak~af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) .+.......+||+++|.+.+..|+++++ T Consensus 9 ~~~~v~~y~~a~~~~D~~~~~~l~a~D~ 36 (131) T 1oh0_A 9 VQGLMARYIELVDVGDIEAIVQMYADDA 36 (131) T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHEEEEE T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCC T ss_conf 9999999999997689999999718884 No 48 >1tuh_A BAL32A, hypothetical protein EGC068; unknown function; 1.85A {Uncultured bacterium} SCOP: d.17.4.11 Probab=30.54 E-value=23 Score=14.44 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=22.0 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 999999999984276789997318999 Q gi|254780815|r 108 RNSYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 108 k~af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) ++..+....||+++|.+.+..+++|++ T Consensus 32 ~~iv~~~~~A~~~~D~~~~~~~~~eDv 58 (156) T 1tuh_A 32 AETVRRGYAAFNSGDMKTLTELFDENA 58 (156) T ss_dssp HHHHHHHHHHHHHTCHHHHHHHEEEEE T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCE T ss_conf 999999999998589999998709988 No 49 >3nrl_A Uncharacterized protein rumgna_01417; beta protein, structural genomics, PSI-2, protein structure initiative; 1.90A {Ruminococcus gnavus} Probab=30.20 E-value=13 Score=16.02 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=19.1 Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEECC Q ss_conf 8999999999618989986689576327 Q gi|254780815|r 204 GKVIDIWTFVRNIPPSNPNWVLISTKLG 231 (232) Q Consensus 204 ~~~~e~WtF~R~~~~~~p~W~L~~iq~~ 231 (232) ..+.+.|.=.|=-.. -+|+|+||... T Consensus 39 V~v~~~WvptRiEm~--~~WYLVGl~~~ 64 (81) T 3nrl_A 39 VKVKDVWVPVRIEMG--DDWYLVGLNVS 64 (81) T ss_dssp EEETTEEEEEEEEES--SSEEEESCCCS T ss_pred EEECCEEEEEEEEEC--CCEEEECCCCC T ss_conf 998999963544732--51699545501 No 50 >3f8h_A Putative polyketide cyclase; YP_611791.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.00A {Silicibacter SP} Probab=29.96 E-value=8.3 Score=17.30 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=22.2 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 999999999984276789997318999 Q gi|254780815|r 108 RNSYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 108 k~af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) +...+...+||+++|.+.+..+++|++ T Consensus 21 ~eiv~~y~~A~n~~D~~~i~~~~~~D~ 47 (150) T 3f8h_A 21 NDTIARYFDAFNAGDTDGMLACLSEDV 47 (150) T ss_dssp CCHHHHHHHHHHHTCHHHHHTTEEEEE T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCE T ss_conf 999999999998789999998638999 No 51 >1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton transfer pathway, revertant, X-RAY crystallography; HET: BCL BPH BPB U10 SPO LDA HTO CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ... Probab=29.84 E-value=22 Score=14.61 Aligned_cols=37 Identities=30% Similarity=0.455 Sum_probs=20.6 Q ss_pred ECCCC-CEECCCCCCCEEEEEEEEEEECCCCCCCCEEEEEE Q ss_conf 76899-68057657848999999999618989986689576 Q gi|254780815|r 189 YDKDN-LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 (232) Q Consensus 189 ~d~~g-~vveG~~~~~~~~~e~WtF~R~~~~~~p~W~L~~i 228 (232) +|-.| .|+..|.+.+=+++|+|.= -.+.-+.|+.+.| T Consensus 146 ~DPrG~~Vvg~DGe~iGtV~DlwVD---~~E~~iRYLeVdt 183 (260) T 1rzh_H 146 KNPIGLPVRGCDLEIAGKVVDIWVD---IPEQMARFLEVEL 183 (260) T ss_dssp CCCTTCEEEETTSCEEEEEEEEEEE---TTTTEEEEEEEEC T ss_pred CCCCCCEEECCCCCCCCEEEEEEEE---CCCCEEEEEEEEE T ss_conf 8878985277898842378899980---8877688999996 No 52 >1sjw_A Nogalonic acid methyl ester cyclase; anthracyclines, nogalamycin, snoal, aldol condensation, lyase, structural genomics; HET: NGV; 1.35A {Streptomyces nogalater} SCOP: d.17.4.9 Probab=27.21 E-value=4.9 Score=18.75 Aligned_cols=27 Identities=11% Similarity=0.345 Sum_probs=22.1 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 999999999984276789997318999 Q gi|254780815|r 108 RNSYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 108 k~af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) +...+...+||++||.+.+..|++|++ T Consensus 5 ~eiV~~~~~a~~~~d~~~l~~~~~~d~ 31 (144) T 1sjw_A 5 TEIVRRMVSAFNTGRTDDVDEYIHPDY 31 (144) T ss_dssp HHHHHHHHHHHHHCCCTTGGGTEEEEE T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCE T ss_conf 999999999998399999997658687 No 53 >2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A Probab=26.32 E-value=16 Score=15.49 Aligned_cols=27 Identities=7% Similarity=-0.098 Sum_probs=21.6 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 999999999984276789997318999 Q gi|254780815|r 108 RNSYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 108 k~af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) ..+++...+|+..+|++.+..|.+|++ T Consensus 10 ~~~~~~~~~a~~~~D~d~~~~l~a~D~ 36 (139) T 2a15_A 10 LIASQSSWRCVQAHDREGWLALMADDV 36 (139) T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEE T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCE T ss_conf 999999999998669889998735987 No 54 >2knc_A Integrin alpha-IIB; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens} Probab=26.11 E-value=28 Score=13.95 Aligned_cols=17 Identities=12% Similarity=0.278 Sum_probs=9.6 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999 Q gi|254780815|r 11 FLILLFAFITFFVFLQL 27 (232) Q Consensus 11 i~Iii~A~IA~fl~~RL 27 (232) +.||+.+++++.|++-| T Consensus 12 ~WiIivsv~~GlLlL~l 28 (54) T 2knc_A 12 IWWVLVGVLGGLLLLTI 28 (54) T ss_dssp HHHHHHHHHHHHHHHHH T ss_pred EEHHHHHHHHHHHHHHH T ss_conf 30469999999999999 No 55 >2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A Probab=24.51 E-value=30 Score=13.77 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=15.4 Q ss_pred EECCCCHHHHHHHHH------HHHHHHHHHHHH Q ss_conf 221267026999999------999999999998 Q gi|254780815|r 2 VFIKMDSGDFLILLF------AFITFFVFLQLR 28 (232) Q Consensus 2 ~~~~m~~~~i~Iii~------A~IA~fl~~RLr 28 (232) +|.|...+-|.-++| |.+.+++|||-| T Consensus 4 v~rgltggeivavifglll~~alllg~~~fr~r 36 (38) T 2k1k_A 4 VSRGLTGGEIVAVIFGLLLGAALLLGILVFRSR 36 (38) T ss_dssp SSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred CCCCCCCCEEHHHHHHHHHHHHHHHHHHHEECC T ss_conf 556776763089999999999999988841012 No 56 >3ke7_A Putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG; HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc 8503} Probab=24.50 E-value=30 Score=13.77 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=20.1 Q ss_pred HHHHHHHHHHCCCHHHHHHHHCHHH Q ss_conf 9999999984276789997318999 Q gi|254780815|r 110 SYEAIVDSFFEGKVHAIEKLVDSRV 134 (232) Q Consensus 110 af~~I~~A~~~gD~~~L~~lls~~~ 134 (232) ......+||..+|.+.+-.+.+|+. T Consensus 19 ~i~~~~~A~~~~D~d~~~~l~a~Da 43 (134) T 3ke7_A 19 IISLEKEALASTDPMAFVELSDTDV 43 (134) T ss_dssp HHHHHHHHHHCSCTTHHHHHEEEEE T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCC T ss_conf 9999999998389999998737882 No 57 >1puo_A Major allergen I polypeptide, fused chain 2, chain 1; CAT allergen, uteroglobin, secretoglobin; 1.85A {Felis catus} SCOP: a.101.1.1 a.101.1.1 Probab=24.40 E-value=30 Score=13.75 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=22.0 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHH Q ss_conf 99999999999984276789997318999999998 Q gi|254780815|r 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 (232) Q Consensus 106 gAk~af~~I~~A~~~gD~~~L~~lls~~~~~~f~~ 140 (232) +-|.||+.||..|.++-+.+ .++.|.++.++.. T Consensus 37 ~Ek~AfeKIQdCy~E~Glkt--klLdpqIM~si~~ 69 (170) T 1puo_A 37 PERTAMKKIQDCYVENGLIS--RVLDGLVMTTISS 69 (170) T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHC T ss_conf 88999999999997414776--6525999999976 No 58 >1z1s_A Hypothetical protein PA3332; beta barrel, conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: PGE; 1.49A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.10 Probab=21.68 E-value=31 Score=13.66 Aligned_cols=29 Identities=10% Similarity=0.037 Sum_probs=24.1 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCHHHH Q ss_conf 99999999999842767899973189999 Q gi|254780815|r 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 (232) Q Consensus 107 Ak~af~~I~~A~~~gD~~~L~~lls~~~~ 135 (232) ++.....-.+++.+||++.+..|++|++. T Consensus 25 ~~eiv~~~~~~~~~gD~e~~~~lfaeD~v 53 (163) T 1z1s_A 25 AKEILVHSLRLLENGDARGWCDLFHPEGV 53 (163) T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTEEEEEE T ss_pred HHHHHHHHHHHHHCCCHHHHHHHCCCCEE T ss_conf 99999999999876799899987189889 No 59 >1zkr_A Major allergen I polypeptide, fused chain 1, chain 2; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A Probab=21.21 E-value=35 Score=13.35 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=24.0 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHH Q ss_conf 9999999999998427678999731899999999 Q gi|254780815|r 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 (232) Q Consensus 106 gAk~af~~I~~A~~~gD~~~L~~lls~~~~~~f~ 139 (232) +-|.||+.||..|..+-+.+ .++.+.++..+. T Consensus 108 ~Er~AfeKIQdCy~E~Glkt--klldpqIM~a~~ 139 (153) T 1zkr_A 108 PERTAMKKIQDCYVENGLIS--RVLDGLVMTTIS 139 (153) T ss_dssp HHHHHHHHHHHHHHHTTGGG--SSSHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCC--HHHCHHHHHHHH T ss_conf 57889999998863126300--342589999995 No 60 >3f7s_A Uncharacterized NTF2-like protein; NP_746665.1, NTF2-like protein of unknown function, structural genomics; 2.11A {Pseudomonas putida KT2440} Probab=20.91 E-value=35 Score=13.32 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=24.2 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCHH Q ss_conf 9999999999998427678999731899 Q gi|254780815|r 106 EARNSYEAIVDSFFEGKVHAIEKLVDSR 133 (232) Q Consensus 106 gAk~af~~I~~A~~~gD~~~L~~lls~~ 133 (232) .-+..++....||.++|.+.+..+++|+ T Consensus 9 eI~~~~~~~~~A~~~~D~~~~~~~~~~d 36 (142) T 3f7s_A 9 EIRQLIERWMQAVRDRDIPGIIAPYADD 36 (142) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEE T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHCCCC T ss_conf 9999999999999858999999521388 Done!