HHSEARCH alignment of GI: 254780815 and SCOP domain: d2cw9a1

Alignment
>d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.6e-39  Score=266.86  Aligned_cols=151  Identities=17%  Similarity=0.401  Sum_probs=146.4

Q ss_pred             CCHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEEEH
Q ss_conf             42024577776612676798999999999-99999999842767899973189999999987776443498202366200
Q gi|254780815|r   81 GTRLNKVMRDIVSVYTDFDPKDFLNEARN-SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI  159 (232)
Q Consensus        81 ~~~~~~~~~~i~~~~~~Fd~~~Fl~gAk~-af~~I~~A~~~gD~~~L~~lls~~~~~~f~~~i~~r~~~~~~~~~~~v~i  159 (232)
                      .++.+.+++.|++.||+||.++|++|||. +|++|++||++||++.|++|||+++|+.|+++|++|+.+|.+.++++++|
T Consensus        24 ~~~~~~~l~~i~~~Dp~F~~~~Fl~gAk~~~~~~i~~A~~~gD~~~L~~llt~~~~~~f~~~i~~r~~~g~~~~~~~i~i  103 (182)
T d2cw9a1          24 KTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDI  103 (182)
T ss_dssp             HHHHHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHHHHTCHHHHHHHBCHHHHHHHHHHHHHHHHTTCEECCEEEEE
T ss_pred             CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             78899999999966889998999999999999999999871679999998509999999999999987798024431465


Q ss_pred             HHHHHHHHCCCCCEEEEEEEEEEEEEEEEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCC--EEEEEEECC
Q ss_conf             012454211346456999999888777667689968057657848999999999618989986--689576327
Q gi|254780815|r  160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN--WVLISTKLG  231 (232)
Q Consensus       160 ~~~~i~~~~~~~~~~~itV~F~~~~i~~~~d~~g~vveG~~~~~~~~~e~WtF~R~~~~~~p~--W~L~~iq~~  231 (232)
                      .+++|++++..++.+++||+|.++|++|++|++|+||+|+++.+.+++|+|||+|++++.+||  |+|++||+.
T Consensus       104 ~~~ei~~a~~~~~~~~itV~F~~~qi~~~~D~~G~iveG~~d~i~~v~e~W~F~R~~~s~~Pn~~W~L~~iq~~  177 (182)
T d2cw9a1         104 DNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRLLDISAS  177 (182)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEECEEECTTSCEEEECTTCCEEEEEEEEEEECTTCSCGGGCEEEEEEEEE
T ss_pred             CCCEEEEEEEECCCEEEEEEEEEEEHHHEECCCCCEECCCCCCCEEEEEEEEEEECCCCCCCCCCEEEEEECCC
T ss_conf             54226788962882499999999812202057998850898873687899999974767898998899986245


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: TIM44-like
domain: Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]