BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780815|ref|YP_003065228.1| hypothetical protein
CLIBASIA_03530 [Candidatus Liberibacter asiaticus str. psy62]
         (232 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780815|ref|YP_003065228.1| hypothetical protein CLIBASIA_03530 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040492|gb|ACT57288.1| hypothetical protein CLIBASIA_03530 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 232

 Score =  461 bits (1185), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/232 (100%), Positives = 232/232 (100%)

Query: 1   MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60
           MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII
Sbjct: 1   MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60

Query: 61  TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
           TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE
Sbjct: 61  TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
           GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI
Sbjct: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE
Sbjct: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232


>gi|315122039|ref|YP_004062528.1| hypothetical protein CKC_01445 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495441|gb|ADR52040.1| hypothetical protein CKC_01445 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 231

 Score =  305 bits (781), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 157/231 (67%), Positives = 185/231 (80%), Gaps = 4/231 (1%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFS---GKYVFS-KRDERGIIT 61
           M  GDFLILL  FI  FV L+LR  LGK+TG+EKP SGF      K +FS K D   +++
Sbjct: 1   MYLGDFLILLCFFIAVFVILKLRSALGKRTGHEKPLSGFSPEQRKKSIFSPKGDGWNVVS 60

Query: 62  LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
           L KGKK+D LDSIN LFP+GTRLNKV RDIVS+Y+ FDPKDFLN  R+SY  IVDSFFEG
Sbjct: 61  LNKGKKEDVLDSINGLFPVGTRLNKVFRDIVSIYSGFDPKDFLNGVRDSYGVIVDSFFEG 120

Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
            +  IEKL+DS+VYQDF DSL  +KS+EK +KSSLVG+DD+KI+NAS+E N +YIT RIV
Sbjct: 121 NILKIEKLIDSKVYQDFADSLLIQKSSEKVIKSSLVGLDDLKIVNASVEGNNIYITTRIV 180

Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           GQFISASYDK+N LI+ DPEIFGKV+D+WTFVRNI  SNPNW+LISTK GE
Sbjct: 181 GQFISASYDKNNALIAGDPEIFGKVVDVWTFVRNISSSNPNWILISTKPGE 231


>gi|222147023|ref|YP_002547980.1| Membrane associated transporter protein [Agrobacterium vitis S4]
 gi|221734013|gb|ACM34976.1| Membrane associated transporter protein [Agrobacterium vitis S4]
          Length = 232

 Score =  167 bits (424), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 88/229 (38%), Positives = 133/229 (58%), Gaps = 5/229 (2%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGK--YVFSKRDERGIITLG 63
           M S DF+ L F      +F QLR VLG++TGNEKP    F+G+        ++  ++TL 
Sbjct: 1   MGSNDFVTLFFLVAAVLIFWQLRSVLGRRTGNEKPPKDPFAGRPDAASPAAEDARVVTLP 60

Query: 64  KGKKKDNLD---SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
           +  + D  +   +I+   P GT LN+ +R +V V   F PK+FLN AR +YE IV +F  
Sbjct: 61  RRDEADGEERQTAIDAYAPAGTPLNQQLRQVVEVDPSFVPKEFLNGARMAYEMIVTAFAA 120

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
           G   +++ L+   VY  F+ +++ R+   + +KS+ VGID  +I +A + +  V IT+R+
Sbjct: 121 GDRKSLKDLLSREVYDGFDAAITEREQRGEVMKSTFVGIDKAEITSAEVRDQEVQITVRL 180

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           V Q ISA+YD    +I  D E  G V DIWTF R+    +PNW LI+T+
Sbjct: 181 VSQLISATYDSQGAVIEGDAESVGDVNDIWTFARDTRSRDPNWKLIATE 229


>gi|325291461|ref|YP_004277325.1| hypothetical protein AGROH133_02812 [Agrobacterium sp. H13-3]
 gi|325059314|gb|ADY63005.1| hypothetical protein AGROH133_02812 [Agrobacterium sp. H13-3]
          Length = 232

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/229 (38%), Positives = 134/229 (58%), Gaps = 5/229 (2%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSK--RDERGIITLG 63
           M   DF+ L F      +FLQLR VLG++TGNEKP    ++ + V      D+  ++TL 
Sbjct: 1   MGFSDFITLFFLVAAVLIFLQLRSVLGRRTGNEKPPFDPYTPRDVAKGPVTDDNKVVTLP 60

Query: 64  KGKKKDNLDSINE---LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
           K  + ++ +   E   L P+ T LN  +R++++    F PK+FLN AR +YE IV  F +
Sbjct: 61  KRSEAEDENRFAEADALAPVDTALNTSLRELMTKDPTFRPKEFLNGARMAYEMIVMGFAD 120

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
           G    ++ L+   V+  F  ++S R+S  + VKS+ VGI+   I  A I ++   IT+RI
Sbjct: 121 GDRKTLKNLLSKEVFDGFEAAISERESRGEVVKSTFVGIEKADITQAGIRDSEEQITLRI 180

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           V Q ISA+YDKD  L+  DP+   +V DIWTF R++   +PNW LI+T+
Sbjct: 181 VSQLISATYDKDGKLVDGDPDAVAEVDDIWTFSRDVRSRDPNWKLIATE 229


>gi|222084209|ref|YP_002542735.1| translocase transmembrane protein [Agrobacterium radiobacter K84]
 gi|221721657|gb|ACM24813.1| translocase transmembrane protein [Agrobacterium radiobacter K84]
          Length = 233

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 133/230 (57%), Gaps = 6/230 (2%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFS---KRDERGIITL 62
           M + DF+ + F      +F QLR VLG++TGNEKP    +      +     D   ++TL
Sbjct: 1   MGANDFVTIFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYGSPDQATGPNAPDAGKVVTL 60

Query: 63  GK---GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
            +    + +D   +I+   P GT LN  +R++      F PK+F+N AR +YE IV +F 
Sbjct: 61  PRRDATEDEDRFAAIDAFTPAGTPLNDSLRELNKADPSFSPKEFVNGARMAYEMIVMAFA 120

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +G  +A++ L+   VY+ F+ +++ R++  + VKS+ VGID   I++A +++    +T+R
Sbjct: 121 DGDRNALKGLLSREVYEGFDAAITDRETKGEKVKSTFVGIDKADIVSAEMKDTEATVTMR 180

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           IV Q ISA+YDK   LI  D E   ++ D+WTF R+    +PNW L++T+
Sbjct: 181 IVSQMISATYDKAGTLIDGDAETVAEISDVWTFARDSRSRDPNWKLVATE 230


>gi|218661852|ref|ZP_03517782.1| import inner membrane translocase subunit Tim44 [Rhizobium etli
           IE4771]
          Length = 234

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 84/230 (36%), Positives = 131/230 (56%), Gaps = 6/230 (2%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG--IITLG 63
           M S DF+ L F      +F QLR VLG++TGNEKP    ++ +            ++TL 
Sbjct: 1   MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60

Query: 64  K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
           +    G+ +D   +I+ +   GT LN+ +R +      F+PK+FLN AR +YE IV ++ 
Sbjct: 61  RRDATGEDEDRFAAIDAVAAPGTPLNESLRALNKADPSFNPKEFLNGARMAYEMIVMAYA 120

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +G    ++ L+   VY  F+ ++  R+S  + VKS+ VGID  +I +A  + +   IT+R
Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGERESRGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           IV Q ISA+YDK + LI  D E   +V D+WTF R+    +PNW L++T+
Sbjct: 181 IVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATE 230


>gi|159184122|ref|NP_353048.2| hypothetical protein Atu0008 [Agrobacterium tumefaciens str. C58]
 gi|159139459|gb|AAK85833.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 217

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 85/214 (39%), Positives = 127/214 (59%), Gaps = 5/214 (2%)

Query: 21  FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSK--RDERGIITL---GKGKKKDNLDSIN 75
             +F QLR VLG++TGNEKP    +S + V      D+  ++TL   G+ ++ +     +
Sbjct: 1   MLIFFQLRSVLGRRTGNEKPPFDPYSPRDVAKGPVADDNKVVTLPKRGEAEEDNRFAEAD 60

Query: 76  ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
            L P  T LN  +RD+++    F PK+FLN AR +YE IV  F +G    ++ L+   V+
Sbjct: 61  ALAPADTPLNASLRDVMTKDPSFRPKEFLNGARMAYEMIVMGFADGDRKTLKNLLSKEVF 120

Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
             F  ++S R+S  + VKS+ VGI+   I  A + ++ V +T+RIV Q ISA+YDKD  L
Sbjct: 121 DGFEAAISERESRGEVVKSTFVGIEKADITQAGVRDSEVQVTLRIVSQLISATYDKDGKL 180

Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           +  DPE   +V DIWTF R+I   +PNW LI+T+
Sbjct: 181 VDGDPEAVAEVDDIWTFSRDIRSRDPNWKLIATE 214


>gi|218673282|ref|ZP_03522951.1| import inner membrane translocase subunit Tim44 [Rhizobium etli
           GR56]
          Length = 234

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 130/230 (56%), Gaps = 6/230 (2%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG--IITLG 63
           M S DF+ L F      +F QLR VLG++TGNEKP    ++ +            ++TL 
Sbjct: 1   MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60

Query: 64  K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
           +     + +D   +I+ +   GT LN+ +R +      F+PK+FLN AR +YE IV ++ 
Sbjct: 61  RRDATAEDEDRFAAIDAVAAPGTPLNESLRALNKADPSFNPKEFLNGARMAYEMIVMAYA 120

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +G    ++ L+   VY  F+ ++  R++  + VKS+ VGID  +I +A  + +   IT+R
Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           IV Q ISA+YDK + LI  D E   +V D+WTF R+    +PNW L++T+
Sbjct: 181 IVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATE 230


>gi|86355677|ref|YP_467569.1| putative translocase transmembrane protein [Rhizobium etli CFN 42]
 gi|86279779|gb|ABC88842.1| putative translocase transmembrane protein [Rhizobium etli CFN 42]
          Length = 234

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 126/237 (53%), Gaps = 20/237 (8%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFS------------GKYV-FS 52
           M S DF+ L F      +F QLR VLG++TGNEKP    +S            GK V   
Sbjct: 1   MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYSPREAAPPEAAEAGKVVTLP 60

Query: 53  KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
           +RD            +D   +I+     GT LN+ +R +      F PK+FLN AR +YE
Sbjct: 61  RRD-------ATADDEDRFSAIDAFAAPGTPLNESLRALNKADPSFSPKEFLNGARMAYE 113

Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
            +V ++ +G    ++ L+   VY  F  ++  R++  + VKS+ VGID  +I +A  + +
Sbjct: 114 MVVMAYADGDRKTLKSLLSREVYDGFEAAIGEREARGEKVKSTFVGIDKAEITHAETKGS 173

Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
              IT+RIV Q ISA+YDK + LI  D E   +V D+WTF R+    +PNW L++T+
Sbjct: 174 EAQITVRIVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATE 230


>gi|116249774|ref|YP_765612.1| hypothetical protein RL0008 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115254422|emb|CAK05496.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 234

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 6/230 (2%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG--IITLG 63
           M S DF+ L F      +F QLR VLG++TGNEKP    ++ +            ++TL 
Sbjct: 1   MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60

Query: 64  K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
           +     + +D   +I+     GT LN+ +R +      F PK+FLN AR +YE IV ++ 
Sbjct: 61  RRDATTEDEDRFAAIDAFAAPGTPLNESLRALNKADPAFSPKEFLNGARMAYEMIVMAYA 120

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +G    ++ L+   VY  F+ ++  R++  + VKS+ VGID  +I +A  + +   IT+R
Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           I  Q ISA+YDK ++LI  D E   +V D+WTF R+    +PNW L++T+
Sbjct: 181 IASQLISATYDKADVLIEGDAENVAEVNDVWTFARDTRSRDPNWKLVATE 230


>gi|209551513|ref|YP_002283430.1| import inner membrane translocase subunit Tim44 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209537269|gb|ACI57204.1| import inner membrane translocase subunit Tim44 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 234

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 129/230 (56%), Gaps = 6/230 (2%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG--IITLG 63
           M S DF+ L F      +F QLR VLG++TGNEKP    ++ +            ++TL 
Sbjct: 1   MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60

Query: 64  K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
           +     + +D   +I+     GT LN+ +R +      F PK+FLN AR +YE IV ++ 
Sbjct: 61  RRDATTEDEDRFAAIDAFAAPGTPLNESLRALNKADPAFSPKEFLNGARMAYEMIVMAYA 120

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +G    ++ L+   VY  F+ ++  R++  + VKS+ VGID  +I +A  + +   IT+R
Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGERETRGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           I+ Q ISA+YDK ++LI  D E   +V D+WTF R+    +PNW L++T+
Sbjct: 181 IISQLISATYDKADVLIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATE 230


>gi|241206951|ref|YP_002978047.1| import inner membrane translocase subunit Tim44 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240860841|gb|ACS58508.1| import inner membrane translocase subunit Tim44 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 234

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 6/230 (2%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG--IITLG 63
           M S DF+ L F      +F QLR VLG++TGNEKP    ++ +            ++TL 
Sbjct: 1   MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60

Query: 64  K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
           +     + +D   +I+     GT LN+ +R +      F PK+FLN AR +YE IV ++ 
Sbjct: 61  RRDATTEDEDRFAAIDAFAAPGTPLNESLRALNKADPAFTPKEFLNGARMAYEMIVMAYA 120

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +G    ++ L+   VY  F+ ++  R++  + VKS+ VGID  +I +A  + +   IT+R
Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           I  Q ISA+YDK ++LI  D E   +V D+WTF R+    +PNW L++T+
Sbjct: 181 IASQLISATYDKADVLIEGDAENVAEVNDVWTFARDTRSRDPNWKLVATE 230


>gi|150398408|ref|YP_001328875.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
           medicae WSM419]
 gi|150029923|gb|ABR62040.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
           medicae WSM419]
          Length = 234

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 81/231 (35%), Positives = 131/231 (56%), Gaps = 7/231 (3%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFS---KRDERGIITL 62
           M S DF+   F      +FLQLR VLG++TG+E+P    +S + +      +D   ++ L
Sbjct: 1   MGSFDFITFFFLIAAVVIFLQLRSVLGRRTGSERPPFDPYSSRDIAQGPEAKDNGKVVQL 60

Query: 63  ----GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
               G  + +     I  +   GT LN  +R +     +F+P +FLN A+ +YE IV +F
Sbjct: 61  PRRDGAAEDESRYAEIETVAKAGTPLNAQLRAVTDADPNFNPVEFLNGAKMAYEMIVMAF 120

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
            +G    ++ L+   VY+ F  +++ R++  + VKS+ VGID   I++A I+++   IT+
Sbjct: 121 ADGDRKTLKGLLSREVYEGFEAAIAERENKGEVVKSTFVGIDKADIVHAEIKDSEENITV 180

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           RI+ Q ISA+YDK   L+  D E   +V D+WTF R+I   +PNW LI+T+
Sbjct: 181 RIISQLISATYDKQGKLVDGDAESVAEVNDLWTFSRDIRSRDPNWKLIATE 231


>gi|328545867|ref|YP_004305976.1| Import inner membrane translocase subunit Tim44 [polymorphum gilvum
           SL003B-26A1]
 gi|326415607|gb|ADZ72670.1| Import inner membrane translocase subunit Tim44 [Polymorphum gilvum
           SL003B-26A1]
          Length = 242

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 82/242 (33%), Positives = 131/242 (54%), Gaps = 24/242 (9%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERG---------- 58
           D   ++F  +  FVF +LR VLGK+TGNE+P F       Y    RD R           
Sbjct: 6   DIYNIIFLALAIFVFFRLRSVLGKRTGNERPPFD-----PYSKPARDNRAPGGAEAGGVD 60

Query: 59  -IITL-------GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNS 110
            +I L       G G  +     ++++ P G+ LN  +R I+SV   F+P+ FL  AR +
Sbjct: 61  NVIPLPGKPVEAGAGDTERGAVVLDKVAPSGSALNAALRQILSVDRSFEPEQFLQGARAA 120

Query: 111 YEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE 170
           YE IV +F EG    ++ L+   VY  F  ++S R++  + ++S+ VGID   I+ A+++
Sbjct: 121 YEMIVTAFAEGDRKTLKNLLSKEVYDGFVTAISEREARGETIESTFVGIDKADIVEAALK 180

Query: 171 ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            +   +T+R+  + ISA+ DKD  ++  DP    +V+DIWTF R+    +PNW L++T+ 
Sbjct: 181 GSVAQVTVRLQSELISATRDKDGHVVDGDPSRVTEVVDIWTFARDTTSRDPNWKLVATES 240

Query: 231 GE 232
            E
Sbjct: 241 AE 242


>gi|15963761|ref|NP_384114.1| putative translocase transmembrane protein [Sinorhizobium meliloti
           1021]
 gi|307302564|ref|ZP_07582321.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
           meliloti BL225C]
 gi|307316105|ref|ZP_07595549.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
           meliloti AK83]
 gi|15072936|emb|CAC41395.1| Import inner membrane translocase subunit TIM44 [Sinorhizobium
           meliloti 1021]
 gi|306897945|gb|EFN28687.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
           meliloti AK83]
 gi|306903234|gb|EFN33824.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
           meliloti BL225C]
          Length = 233

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 131/230 (56%), Gaps = 6/230 (2%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFS---KRDERGIITL 62
           M S DF+   F      +FLQLR VLG++TG+E+P    +S + +      +D   ++ L
Sbjct: 1   MGSFDFITFFFLIAAVVIFLQLRSVLGRRTGSERPPFDPYSPRDIAQGPEAKDNGKVVQL 60

Query: 63  GK---GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
            +    + +    +I  +   GT LN  +R +     +F+P +FLN A+ +YE IV +F 
Sbjct: 61  PRRETAEDESRYAAIEIVAKAGTPLNAQLRAMTDADPNFNPAEFLNGAKMAYEMIVMAFA 120

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +G    ++ L+   VY+ F  +++ R++  + VKS+ VGID   I++A I++    IT+R
Sbjct: 121 DGDRKTLKGLLSREVYEGFEAAIAEREAKGEVVKSTFVGIDKADIVHAEIKDAEENITVR 180

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           I+ Q ISA+YDK   L+  D +   +V D+WTF R+I   +PNW LI+T+
Sbjct: 181 IISQLISATYDKQGKLVDGDADSVAEVNDLWTFARDIRSRDPNWKLIATE 230


>gi|239833115|ref|ZP_04681444.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
           intermedium LMG 3301]
 gi|239825382|gb|EEQ96950.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
           intermedium LMG 3301]
          Length = 253

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 125/212 (58%), Gaps = 4/212 (1%)

Query: 22  FVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINEL 77
            +FLQLR VLG++TGNEKP    ++   S     +  +   +++L +   + +  +I++ 
Sbjct: 39  IIFLQLRNVLGRRTGNEKPPFDPYTSARSADAAPAGSETDNVVSLPRRTGEKDFTAIDKA 98

Query: 78  FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD 137
            P GT +N  +R I +    FDP  F++  + +YE IV SF +G    ++ L+   VY+ 
Sbjct: 99  APAGTPVNDGLRAIYAADPSFDPASFVDGVKIAYEMIVMSFADGDRKVLKNLLSKDVYEG 158

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197
           F  ++  R++  ++V+SS VGID  +I  A ++ +  ++T+ IV Q IS++YDKD  LI 
Sbjct: 159 FVSAIDEREARGESVRSSFVGIDKAEITGAEMKGSEAHVTVNIVSQMISSTYDKDGKLID 218

Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            DPE   ++ D+WTF R+    +PNW L++T+
Sbjct: 219 GDPENVLEIKDLWTFARDTRSRDPNWKLVATE 250


>gi|227823867|ref|YP_002827840.1| putative import inner membrane translocase, subunit Tim44
           [Sinorhizobium fredii NGR234]
 gi|227342869|gb|ACP27087.1| putative import inner membrane translocase, subunit Tim44
           [Sinorhizobium fredii NGR234]
          Length = 233

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 128/230 (55%), Gaps = 6/230 (2%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF--SKRDERGIITLG 63
           M S DF+   F      +FLQLR VLG++TGNE+P    +S +       RD   ++ L 
Sbjct: 1   MGSFDFITFFFLIAAVVIFLQLRSVLGRRTGNERPPFDPYSPREAQGPEARDNGKVVQLP 60

Query: 64  K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
           +     + +    +I+     GT LN  +R +      F P +FLN A+ +YE IV +F 
Sbjct: 61  RRESTAEDESRYAAIDGFSKPGTPLNGQLRALSDADPSFQPAEFLNGAKMAYEMIVMAFA 120

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +G    ++ L+   VY+ F  +++ R++  + VKS+ VGI+   I++A +++    +T+R
Sbjct: 121 DGDRKTLKGLLSREVYEGFETAIAERETRGEVVKSTFVGIEKADIVHAELKDAEENVTVR 180

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           I+ Q ISA+YDK   LI  D +   +V D+WTF R+I   +PNW LI+T+
Sbjct: 181 IISQLISATYDKQGKLIDGDADSVAEVNDLWTFARDIRSRDPNWKLIATE 230


>gi|307943366|ref|ZP_07658710.1| import inner membrane translocase subunit Tim44 [Roseibium sp.
           TrichSKD4]
 gi|307772996|gb|EFO32213.1| import inner membrane translocase subunit Tim44 [Roseibium sp.
           TrichSKD4]
          Length = 244

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 136/246 (55%), Gaps = 30/246 (12%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERGIITLGKGKKK 68
           D   ++F  +  F+  +L+ VLGK+TGNE+P F         +SK+D+ G  + G   + 
Sbjct: 6   DVYNIIFLGLAVFILFRLKSVLGKRTGNERPPFD-------PYSKQDDAGQSSQGGKSQS 58

Query: 69  DNLDS----------------------INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNE 106
           DN+                        I++L P GT LN+ ++ I+SV   F+P++F+  
Sbjct: 59  DNVIPMPGQESYQETGIREPEENGEVVIDKLAPQGTALNEALKQILSVDRTFEPREFIEG 118

Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN 166
           A  +YE IV +F EG    +++L+   V+  F  ++  R+  ++ ++S+ VGID  +I+ 
Sbjct: 119 ASAAYEMIVTAFAEGDRKTLKQLLSKDVFDGFIMAIDEREKRDEVIESTFVGIDKAEIVE 178

Query: 167 ASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226
           A++++ T  +T+++  Q ISA+ DKD  ++  DP    +VIDIWTF R+    +PNW L+
Sbjct: 179 AALKDGTAQVTVKVQSQLISATCDKDGEVVDGDPNKVSEVIDIWTFARDTGSRDPNWKLV 238

Query: 227 STKLGE 232
           +T+  E
Sbjct: 239 ATESAE 244


>gi|190889648|ref|YP_001976190.1| translocase transmembrane protein [Rhizobium etli CIAT 652]
 gi|190694927|gb|ACE89012.1| putative translocase transmembrane protein [Rhizobium etli CIAT
           652]
          Length = 233

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 122/232 (52%), Gaps = 6/232 (2%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG--IITLG 63
           M S DF+ L F      +F QLR VLG++TGNEKP    +  +            ++TL 
Sbjct: 1   MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYQPRDAAPAEAADAGKVVTLP 60

Query: 64  K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
           +     + +D   +I+ +   GT LN+ +R +      F PK+FLN AR +YE IV ++ 
Sbjct: 61  RRDATAEDEDRFSAIDAVAAPGTPLNESLRALNKADASFTPKEFLNGARMAYEMIVMAYA 120

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +G    ++ L+   VY  F+ ++  R++  + VKS+ VGID  +I +A  +     IT+R
Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGTEAQITVR 180

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           IV Q ISA+YDK ++LI  D E   +V D+WTF    P +         ++G
Sbjct: 181 IVSQLISATYDKADVLIEGDAENVAEVNDLWTFAPRYPLARSELETCGDRIG 232


>gi|153008182|ref|YP_001369397.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
           anthropi ATCC 49188]
 gi|151560070|gb|ABS13568.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
           anthropi ATCC 49188]
          Length = 231

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 125/211 (59%), Gaps = 4/211 (1%)

Query: 23  VFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELF 78
           +FLQLR VLG++TG+EKP    ++   S     +  +   +++L +   + +  +I++  
Sbjct: 18  IFLQLRNVLGRRTGSEKPPFDPYTSARSADAAPASGETDNVVSLPRRPGEKDFTAIDKAA 77

Query: 79  PIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138
           P+GT +N  MR I +    FDP  F+   + +YE IV SF +G    ++ L+   V++ F
Sbjct: 78  PVGTPVNDGMRAIYAADPSFDPAGFVEGVKIAYEMIVMSFADGDRKVLKNLLSKDVFEGF 137

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
             ++  R++  ++V+SS VGID  +I  A ++ +  ++T+ IV Q IS+++DKD  LI  
Sbjct: 138 VSAIDDRETRGESVRSSFVGIDKAEIAGAEMKGSEAHVTVNIVSQMISSTFDKDGKLIDG 197

Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           DPE   ++ D+WTF R+    +PNW L++T+
Sbjct: 198 DPENVLEIKDLWTFARDTRSRDPNWKLVATE 228


>gi|118591473|ref|ZP_01548870.1| Calcium-binding EF-hand [Stappia aggregata IAM 12614]
 gi|118435801|gb|EAV42445.1| Calcium-binding EF-hand [Stappia aggregata IAM 12614]
          Length = 230

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 129/228 (56%), Gaps = 14/228 (6%)

Query: 19  ITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKR----DERGIITLGKGKKKDNL--- 71
           +  F+  +LR VLGK+TGNE+P    +S       R    D+  +I L     +D     
Sbjct: 3   LAVFILFRLRSVLGKRTGNERPPFDPYSKPDQQRDRKNGNDQDNVIPLPNQPMQDAETVE 62

Query: 72  DS-------INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
           D+       I+++ P G+ LN  ++ I+SV   F+P+ FL  AR +YE IV +F +G   
Sbjct: 63  DTGRGGDVVIDKVAPAGSALNSALKQILSVDRSFEPEPFLEGARAAYEMIVMAFADGDKK 122

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
           A++ L+   VY+ F  ++  R+   + ++S+ VGID  +I+ A+++ +T  +T++I  Q 
Sbjct: 123 ALKNLLSREVYEGFVAAIDEREKRGETIESTFVGIDKAEIVEAALKNSTAQVTVKIHSQL 182

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           ISA+ DK+  ++  DP    +VIDIWTF R+    +PNW L++T+  E
Sbjct: 183 ISATRDKNGEVVDGDPAKVSEVIDIWTFARDTTSRDPNWKLVATESAE 230


>gi|319407969|emb|CBI81623.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 230

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 128/227 (56%), Gaps = 4/227 (1%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKG 65
           D ++++   I   VF+QLR VLGK+TG E+P    +SG    +      D          
Sbjct: 4   DVVLVIALVIMVVVFMQLRNVLGKRTGFERPPFDPYSGCSKKQIETETVDHSLSFPHQAN 63

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
            +K +   I+ + P G+ LN  +R I    ++F P+ F+N  + +YE I+ +F +G    
Sbjct: 64  ARKKDFSEIDAIAPEGSALNDGLRAICQADSNFSPQFFVNGVQIAYEMIMTAFAQGDRDQ 123

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           ++KL+   V++ F  ++  R+  E+ V+ + VGI+ ++ + A +++N  ++T+RIV + I
Sbjct: 124 LKKLLSQDVFESFCAAIERREKREEKVEFTFVGINKVEFVAAEMQKNEEFLTVRIVSEII 183

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           S +Y+K N  I  DPE   ++ D+WTFVRN    +PNW L +T+ G+
Sbjct: 184 SVTYNKQNECIDGDPEAIVEIKDVWTFVRNSLSQDPNWKLFATEDGD 230


>gi|110635813|ref|YP_676021.1| import inner membrane translocase, subunit Tim44 [Mesorhizobium sp.
           BNC1]
 gi|110286797|gb|ABG64856.1| import inner membrane translocase, subunit Tim44 [Chelativorans sp.
           BNC1]
          Length = 235

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 131/231 (56%), Gaps = 8/231 (3%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDER----GIITLGK 64
           DF  + F      +F QLR VLG++TG+E+P F  + +G+   ++ ++      ++ L +
Sbjct: 5   DFGTIFFLVAAVVIFFQLRNVLGRRTGSERPPFDPYTAGRSRPAEAEKSVKNDTVVALPR 64

Query: 65  GK---KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
            K    ++  + I+++   GT LN+ +R I      FDP  F++ A+ +YE IV +F +G
Sbjct: 65  RKGLVDEERYNIIDKVAQPGTELNRGLRAIKDADPSFDPNTFVDGAKLAYEMIVMAFADG 124

Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
               ++ L+   VY+ F  ++  R+   + ++SS VGID   II+A ++ +  ++T+RIV
Sbjct: 125 DRRTLKNLLSREVYEGFVSAIDERERRSEKIESSFVGIDKATIISAEMKGSEAHVTLRIV 184

Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            + ISA+ D    +I  DPE   +V DIWTF R+    +PNW L++T+  E
Sbjct: 185 SELISATRDSGGSIIDGDPETVAEVKDIWTFARDTRSRDPNWKLVATEAEE 235


>gi|27375753|ref|NP_767282.1| hypothetical protein blr0642 [Bradyrhizobium japonicum USDA 110]
 gi|27348891|dbj|BAC45907.1| blr0642 [Bradyrhizobium japonicum USDA 110]
          Length = 235

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 11/230 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL-GKGKKK 68
           D   ++F  +  F+FL+LR VLG++TGNE+P     + +       ++ ++T+ GK   +
Sbjct: 2   DIYTIIFLALAVFIFLRLRSVLGQRTGNERPPFDHTAARNALGGAQDKNVVTMPGKVIDQ 61

Query: 69  DNLDSINELFPI----------GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
             L    E  P           GT L + +  IV   + FDP+ F++ AR +YE IV +F
Sbjct: 62  APLAPTVEPTPPSDRWKGLTEPGTALAQGLDAIVDKDSTFDPRHFISGARGAYEMIVLAF 121

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
             G   A+  L+ S VY+ F+ ++  R+ NE+  ++  V ID  +++ A + + T  +TI
Sbjct: 122 ANGDRRALRDLLSSEVYESFDAAIKEREKNEQKTETRFVSIDKAELVGAELRDRTAQLTI 181

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           R V Q ISA+ DK   ++    +    + DIWTF R+I   +PNW L+ T
Sbjct: 182 RFVSQMISATRDKAGNIVDGSADTVADITDIWTFARDITSRDPNWKLVGT 231


>gi|49474924|ref|YP_032965.1| hypothetical protein BH01040 [Bartonella henselae str. Houston-1]
 gi|49237729|emb|CAF26919.1| hypothetical protein BH01040 [Bartonella henselae str. Houston-1]
          Length = 230

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 128/224 (57%), Gaps = 4/224 (1%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKG 65
           D +++L   I   VF+QLR VLGK+ G EKP    +S     +      D    ++    
Sbjct: 4   DIVLVLALVIMVVVFMQLRNVLGKRIGFEKPPFDPYSSRSKKQIETETADNNASLSHQVN 63

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
            +K++   I+ + P G+ LNK +R +      F P+ F+  A+ +YE IV +F +G  + 
Sbjct: 64  SQKNDFSEIDAIAPEGSELNKGLRALHQNDPHFSPQFFIKGAQVAYEMIVTAFAKGDRNQ 123

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           + +L+   V++ F+ ++  R+ N + V+ + VGI+ ++ + A+++E   ++TIRIV + I
Sbjct: 124 LRRLLSQDVFESFDAAIEQREKNNERVQFTFVGINKIEFVAAAMQEKEEFLTIRIVSEMI 183

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           SA+Y++    I  DP+   ++ DIWTFVRN   ++PNW L +T+
Sbjct: 184 SATYNEQGERIDGDPDTIVEIRDIWTFVRNSLSTDPNWKLFATE 227


>gi|319780601|ref|YP_004140077.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317166489|gb|ADV10027.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 235

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 127/229 (55%), Gaps = 10/229 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKG 65
           DF  + F      +F QLR VLG++TG+E+P    +S   +G    +++ E  +++L + 
Sbjct: 5   DFGTIFFLIAAVVIFFQLRNVLGRRTGSERPPFDPYSAARTGDKDAAQKSE-NVVSLPRK 63

Query: 66  K-----KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
           +       D   +I+      T LNK +R I      F+PK F++ A+ +YE IV ++ +
Sbjct: 64  RPPGEPAPDAYAAIDAFAKPDTDLNKGLRTIKDNDPSFEPKGFVDGAKMAYEMIVMAYAD 123

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
           G    ++ L+   VY  F  ++  R++  + ++SS VGID   I++A ++    ++T+RI
Sbjct: 124 GDRKTLKNLLSREVYDGFVAAIGEREAKAEKIQSSFVGIDKADIVSAEMKGGEAHVTLRI 183

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           + + ISA+ DK   +I  DPE   +V D+WTF R+    +PNW L++T+
Sbjct: 184 ISELISATRDKAGAVIDGDPETVAEVKDVWTFARDTRSRDPNWKLVATE 232


>gi|62290918|ref|YP_222711.1| hypothetical protein BruAb1_2049 [Brucella abortus bv. 1 str.
           9-941]
 gi|62197050|gb|AAX75350.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
          Length = 231

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 124/214 (57%), Gaps = 4/214 (1%)

Query: 20  TFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
              +FLQLR VLG++TGNEKP    ++   S     +  +   +++L +   + +  +I+
Sbjct: 15  AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74

Query: 76  ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
           ++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   VY
Sbjct: 75  KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134

Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
           + F  ++  R+   + V+SS VGID   I  A ++ +  ++T+ IV Q IS++ D+D  +
Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 194

Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           I  DP+   ++ D+WTF R+    +PNW L++T+
Sbjct: 195 IDGDPDNMVEIKDLWTFARDTNSRDPNWKLVATE 228


>gi|260467422|ref|ZP_05813593.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
           opportunistum WSM2075]
 gi|259028818|gb|EEW30123.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
           opportunistum WSM2075]
          Length = 236

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 127/230 (55%), Gaps = 11/230 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITL--- 62
           DF  + F      +F QLR VLG++TG+E+P    ++   +G    +++ E  +++L   
Sbjct: 5   DFGTIFFLIAAVVIFFQLRNVLGRRTGSERPPFDPYTAARTGDKDAAQKPE-NVVSLPRK 63

Query: 63  ---GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
              G+    D   +I+      T LNK +R I      FDPK F++ A+ +YE IV ++ 
Sbjct: 64  RLPGEPAAPDAYAAIDAFAKPDTDLNKGLRTIKDNDPSFDPKGFVDGAKMAYEMIVMAYA 123

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +G    ++ L+   V+  F  ++  R++  + ++SS VGID   I++A ++    ++T+R
Sbjct: 124 DGDRKTLKNLLSREVFDGFVAAIGEREAKSEKIQSSFVGIDKADIVSAEMKGGEAHVTLR 183

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           I+ + ISA+ DK   +I  DPE   +V D+WTF R+    +PNW L++T+
Sbjct: 184 IISELISATRDKAGTVIDGDPETVAEVKDVWTFARDTRSRDPNWKLVATE 233


>gi|23502922|ref|NP_699049.1| hypothetical protein BR2074 [Brucella suis 1330]
 gi|82700829|ref|YP_415403.1| calcium-binding EF-hand [Brucella melitensis biovar Abortus 2308]
 gi|225626454|ref|ZP_03784493.1| import inner membrane translocase subunit Tim44 [Brucella ceti str.
           Cudo]
 gi|237816425|ref|ZP_04595418.1| Tim44-like domain protein [Brucella abortus str. 2308 A]
 gi|256370472|ref|YP_003107983.1| hypothetical protein BMI_I2096 [Brucella microti CCM 4915]
 gi|23348955|gb|AAN30964.1| conserved hypothetical protein [Brucella suis 1330]
 gi|82616930|emb|CAJ12031.1| Calcium-binding EF-hand [Brucella melitensis biovar Abortus 2308]
 gi|225618111|gb|EEH15154.1| import inner membrane translocase subunit Tim44 [Brucella ceti str.
           Cudo]
 gi|237788492|gb|EEP62707.1| Tim44-like domain protein [Brucella abortus str. 2308 A]
 gi|256000635|gb|ACU49034.1| hypothetical protein BMI_I2096 [Brucella microti CCM 4915]
          Length = 235

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 124/214 (57%), Gaps = 4/214 (1%)

Query: 20  TFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
              +FLQLR VLG++TGNEKP    ++   S     +  +   +++L +   + +  +I+
Sbjct: 19  AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 78

Query: 76  ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
           ++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   VY
Sbjct: 79  KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 138

Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
           + F  ++  R+   + V+SS VGID   I  A ++ +  ++T+ IV Q IS++ D+D  +
Sbjct: 139 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 198

Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           I  DP+   ++ D+WTF R+    +PNW L++T+
Sbjct: 199 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATE 232


>gi|161619988|ref|YP_001593875.1| import inner membrane translocase subunit Tim44 [Brucella canis
           ATCC 23365]
 gi|163844092|ref|YP_001628496.1| import inner membrane translocase subunit Tim44 [Brucella suis ATCC
           23445]
 gi|189025131|ref|YP_001935899.1| Calcium-binding EF-hand [Brucella abortus S19]
 gi|254690207|ref|ZP_05153461.1| Calcium-binding EF-hand [Brucella abortus bv. 6 str. 870]
 gi|254694697|ref|ZP_05156525.1| Calcium-binding EF-hand [Brucella abortus bv. 3 str. Tulya]
 gi|254696324|ref|ZP_05158152.1| Calcium-binding EF-hand [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700706|ref|ZP_05162534.1| Calcium-binding EF-hand [Brucella suis bv. 5 str. 513]
 gi|254705077|ref|ZP_05166905.1| Calcium-binding EF-hand [Brucella suis bv. 3 str. 686]
 gi|254709052|ref|ZP_05170863.1| Calcium-binding EF-hand [Brucella pinnipedialis B2/94]
 gi|254713521|ref|ZP_05175332.1| Calcium-binding EF-hand [Brucella ceti M644/93/1]
 gi|254716123|ref|ZP_05177934.1| Calcium-binding EF-hand [Brucella ceti M13/05/1]
 gi|254718117|ref|ZP_05179928.1| Calcium-binding EF-hand [Brucella sp. 83/13]
 gi|254731240|ref|ZP_05189818.1| Calcium-binding EF-hand [Brucella abortus bv. 4 str. 292]
 gi|256030577|ref|ZP_05444191.1| Calcium-binding EF-hand [Brucella pinnipedialis M292/94/1]
 gi|256060039|ref|ZP_05450221.1| Calcium-binding EF-hand [Brucella neotomae 5K33]
 gi|260169483|ref|ZP_05756294.1| Calcium-binding EF-hand [Brucella sp. F5/99]
 gi|260546180|ref|ZP_05821920.1| calcium-binding EF-hand protein [Brucella abortus NCTC 8038]
 gi|260567455|ref|ZP_05837925.1| calcium-binding EF-hand protein [Brucella suis bv. 4 str. 40]
 gi|260755747|ref|ZP_05868095.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 6 str. 870]
 gi|260758971|ref|ZP_05871319.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 4 str. 292]
 gi|260760695|ref|ZP_05873038.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|261215024|ref|ZP_05929305.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 3 str. Tulya]
 gi|261217893|ref|ZP_05932174.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           M13/05/1]
 gi|261316550|ref|ZP_05955747.1| import inner membrane translocase subunit Tim44 [Brucella
           pinnipedialis B2/94]
 gi|261321257|ref|ZP_05960454.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           M644/93/1]
 gi|261324015|ref|ZP_05963212.1| import inner membrane translocase subunit Tim44 [Brucella neotomae
           5K33]
 gi|261751215|ref|ZP_05994924.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
           5 str. 513]
 gi|261755779|ref|ZP_05999488.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
           3 str. 686]
 gi|261759008|ref|ZP_06002717.1| calcium-binding EF-hand protein [Brucella sp. F5/99]
 gi|265983069|ref|ZP_06095804.1| import inner membrane translocase subunit Tim44 [Brucella sp.
           83/13]
 gi|265987624|ref|ZP_06100181.1| import inner membrane translocase subunit Tim44 [Brucella
           pinnipedialis M292/94/1]
 gi|306839744|ref|ZP_07472546.1| import inner membrane translocase subunit Tim44 [Brucella sp. NF
           2653]
 gi|306842810|ref|ZP_07475450.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO2]
 gi|306843493|ref|ZP_07476094.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO1]
 gi|161336799|gb|ABX63104.1| import inner membrane translocase subunit Tim44 [Brucella canis
           ATCC 23365]
 gi|163674815|gb|ABY38926.1| import inner membrane translocase subunit Tim44 [Brucella suis ATCC
           23445]
 gi|189020703|gb|ACD73425.1| Calcium-binding EF-hand [Brucella abortus S19]
 gi|260096287|gb|EEW80163.1| calcium-binding EF-hand protein [Brucella abortus NCTC 8038]
 gi|260156973|gb|EEW92053.1| calcium-binding EF-hand protein [Brucella suis bv. 4 str. 40]
 gi|260669289|gb|EEX56229.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 4 str. 292]
 gi|260671127|gb|EEX57948.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260675855|gb|EEX62676.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 6 str. 870]
 gi|260916631|gb|EEX83492.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 3 str. Tulya]
 gi|260922982|gb|EEX89550.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           M13/05/1]
 gi|261293947|gb|EEX97443.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           M644/93/1]
 gi|261295773|gb|EEX99269.1| import inner membrane translocase subunit Tim44 [Brucella
           pinnipedialis B2/94]
 gi|261299995|gb|EEY03492.1| import inner membrane translocase subunit Tim44 [Brucella neotomae
           5K33]
 gi|261738992|gb|EEY26988.1| calcium-binding EF-hand protein [Brucella sp. F5/99]
 gi|261740968|gb|EEY28894.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
           5 str. 513]
 gi|261745532|gb|EEY33458.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
           3 str. 686]
 gi|264659821|gb|EEZ30082.1| import inner membrane translocase subunit Tim44 [Brucella
           pinnipedialis M292/94/1]
 gi|264661661|gb|EEZ31922.1| import inner membrane translocase subunit Tim44 [Brucella sp.
           83/13]
 gi|306276184|gb|EFM57884.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO1]
 gi|306287004|gb|EFM58515.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO2]
 gi|306405204|gb|EFM61481.1| import inner membrane translocase subunit Tim44 [Brucella sp. NF
           2653]
          Length = 231

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 124/214 (57%), Gaps = 4/214 (1%)

Query: 20  TFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
              +FLQLR VLG++TGNEKP    ++   S     +  +   +++L +   + +  +I+
Sbjct: 15  AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74

Query: 76  ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
           ++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   VY
Sbjct: 75  KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134

Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
           + F  ++  R+   + V+SS VGID   I  A ++ +  ++T+ IV Q IS++ D+D  +
Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 194

Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           I  DP+   ++ D+WTF R+    +PNW L++T+
Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATE 228


>gi|256112399|ref|ZP_05453320.1| transporter [Brucella melitensis bv. 3 str. Ether]
 gi|265993836|ref|ZP_06106393.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis bv. 3 str. Ether]
 gi|262764817|gb|EEZ10738.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis bv. 3 str. Ether]
          Length = 231

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 125/214 (58%), Gaps = 4/214 (1%)

Query: 20  TFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERG---IITLGKGKKKDNLDSIN 75
              +FLQLR VLG++TGNEKP F  + S +   +     G   +++L +   + +  +I+
Sbjct: 15  AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGGPDNVVSLPRRANEKDYTAID 74

Query: 76  ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
           ++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   VY
Sbjct: 75  KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134

Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
           + F  ++  R+   + V+SS VGID   I  A ++ +  ++T+ IV Q IS++ D+D  +
Sbjct: 135 EGFVAAIDEREKQGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 194

Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           I  DP+   ++ D+WTF R+    +PNW L++T+
Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATE 228


>gi|256158573|ref|ZP_05456463.1| calcium-binding EF-hand [Brucella ceti M490/95/1]
 gi|256253984|ref|ZP_05459520.1| calcium-binding EF-hand [Brucella ceti B1/94]
 gi|261221124|ref|ZP_05935405.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           B1/94]
 gi|265997084|ref|ZP_06109641.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           M490/95/1]
 gi|260919708|gb|EEX86361.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           B1/94]
 gi|262551552|gb|EEZ07542.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           M490/95/1]
          Length = 231

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 124/214 (57%), Gaps = 4/214 (1%)

Query: 20  TFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
              +FLQLR VLG++TGNEKP    ++   S     +  +   +++L +   + +  +I+
Sbjct: 15  AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74

Query: 76  ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
           ++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   VY
Sbjct: 75  KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134

Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
           + F  ++  R+   + V+SS VGID   I  A ++ +  ++T+ IV Q IS++ D+D  +
Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQIISSTLDRDGKV 194

Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           I  DP+   ++ D+WTF R+    +PNW L++T+
Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATE 228


>gi|17988336|ref|NP_540970.1| transporter [Brucella melitensis bv. 1 str. 16M]
 gi|17984111|gb|AAL53234.1| transporter [Brucella melitensis bv. 1 str. 16M]
          Length = 216

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 125/213 (58%), Gaps = 4/213 (1%)

Query: 21  FFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERG---IITLGKGKKKDNLDSINE 76
             +FLQLR VLG++TGNEKP F  + S +   +     G   +++L +   + +  +I++
Sbjct: 1   MIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGGPDNVVSLPRRANEKDYTAIDK 60

Query: 77  LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136
           + P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   VY+
Sbjct: 61  IAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVYE 120

Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196
            F  ++  R+   + V+SS VGID   I  A ++ +  ++T+ IV Q IS++ D+D  +I
Sbjct: 121 GFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKVI 180

Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
             DP+   ++ D+WTF R+    +PNW L++T+
Sbjct: 181 DGDPDNVVEIKDLWTFARDTNSRDPNWKLVATE 213


>gi|225853505|ref|YP_002733738.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis ATCC 23457]
 gi|256045678|ref|ZP_05448556.1| transporter [Brucella melitensis bv. 1 str. Rev.1]
 gi|256263013|ref|ZP_05465545.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis bv. 2 str. 63/9]
 gi|260562979|ref|ZP_05833465.1| calcium-binding EF-hand protein [Brucella melitensis bv. 1 str.
           16M]
 gi|265992099|ref|ZP_06104656.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|225641870|gb|ACO01784.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis ATCC 23457]
 gi|260152995|gb|EEW88087.1| calcium-binding EF-hand protein [Brucella melitensis bv. 1 str.
           16M]
 gi|263003165|gb|EEZ15458.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263092886|gb|EEZ17061.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis bv. 2 str. 63/9]
 gi|326410072|gb|ADZ67137.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis M28]
 gi|326539788|gb|ADZ88003.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis M5-90]
          Length = 231

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 125/214 (58%), Gaps = 4/214 (1%)

Query: 20  TFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERG---IITLGKGKKKDNLDSIN 75
              +FLQLR VLG++TGNEKP F  + S +   +     G   +++L +   + +  +I+
Sbjct: 15  AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGGPDNVVSLPRRANEKDYTAID 74

Query: 76  ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
           ++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   VY
Sbjct: 75  KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134

Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
           + F  ++  R+   + V+SS VGID   I  A ++ +  ++T+ IV Q IS++ D+D  +
Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 194

Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           I  DP+   ++ D+WTF R+    +PNW L++T+
Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATE 228


>gi|49473777|ref|YP_031819.1| hypothetical protein BQ00970 [Bartonella quintana str. Toulouse]
 gi|49239280|emb|CAF25603.1| hypothetical protein BQ00970 [Bartonella quintana str. Toulouse]
          Length = 230

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 130/224 (58%), Gaps = 4/224 (1%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG--IITLGK--G 65
           + +++L   I   VF+QLR VLGK+ G EKP    +SG+       E    I++      
Sbjct: 4   NIVLVLALVIMVVVFVQLRNVLGKRIGFEKPPFDPYSGRSKKQTETETADNIVSFPHQGN 63

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
            +K++   I+ + P G+ LN+ +R +      F P+ F+  A+ +YE IV +F +G    
Sbjct: 64  SQKNDFSEIDAISPKGSALNEGLRALRQSDPHFSPQFFIKGAQVAYEMIVTAFAKGDRDQ 123

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           ++KL+   V++ F  ++  R+ N + V+ + VGI+ ++ + A++++N  ++T+RIV + I
Sbjct: 124 LKKLLSQNVFESFCAAIEQREKNNERVQFTFVGINKIEFVAAAMQDNEEFLTVRIVSEMI 183

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           SA+Y++   LI  DP+   ++ D+WTFV N   S+PNW L +T+
Sbjct: 184 SATYNEQEELIDGDPDAIVEIRDVWTFVHNSLSSDPNWKLFATE 227


>gi|254500164|ref|ZP_05112315.1| Tim44-like domain family [Labrenzia alexandrii DFL-11]
 gi|222436235|gb|EEE42914.1| Tim44-like domain family [Labrenzia alexandrii DFL-11]
          Length = 245

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 130/228 (57%), Gaps = 17/228 (7%)

Query: 22  FVFLQLRGVLGKKTGNEKP----------FSGFFSGK------YVFSKRDERGIITLGKG 65
           F+  +LR VLGK+TG E+P           +G  +G+          ++   G   +   
Sbjct: 18  FILFRLRSVLGKRTGEERPPFDPYSKPEQQNGQANGQDNVIPLPHQGQQSPEGYDDMAPA 77

Query: 66  KKKDNLDS-INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
           +++++ +  I+++ P G+ LN  ++ I+SV   F+P+ F+  A+ +YE IV +F +G   
Sbjct: 78  RQEEDGEVVIDKVAPAGSALNNALKQILSVDRSFEPEPFIQGAKAAYEMIVMAFADGDKK 137

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
           A++ L+   V++ F+ ++  R+   + ++S+ VGID  +I+ A++++ T  +T+RI  Q 
Sbjct: 138 ALKNLLSRDVFEGFSAAIDDREKRGETIESTFVGIDKAEIVEAALKDTTAQVTVRIHSQL 197

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           ISA+ DK   ++  DP    +VIDIWTF R+    +PNW L++T+  E
Sbjct: 198 ISATRDKGGEVVDGDPAKVTEVIDIWTFARDTATRDPNWKLVATESAE 245


>gi|297247302|ref|ZP_06931020.1| hypothetical protein BAYG_00201 [Brucella abortus bv. 5 str. B3196]
 gi|297174471|gb|EFH33818.1| hypothetical protein BAYG_00201 [Brucella abortus bv. 5 str. B3196]
          Length = 235

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 124/214 (57%), Gaps = 4/214 (1%)

Query: 20  TFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
              +FLQLR VLG++TGNEKP    ++   S     +  +   +++L +   + +  +I+
Sbjct: 19  AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 78

Query: 76  ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
           ++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   VY
Sbjct: 79  KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 138

Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
           + F  ++  R+   + V+SS VGID   I  A ++ +  ++T+ IV Q IS++ D+D  +
Sbjct: 139 EGFVAAIDEREKWGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 198

Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           I  DP+   ++ D+WTF R+    +PNW L++T+
Sbjct: 199 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATE 232


>gi|294851303|ref|ZP_06791976.1| hypothetical protein BAZG_00203 [Brucella sp. NVSL 07-0026]
 gi|294819892|gb|EFG36891.1| hypothetical protein BAZG_00203 [Brucella sp. NVSL 07-0026]
          Length = 235

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 123/214 (57%), Gaps = 4/214 (1%)

Query: 20  TFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
              +FLQLR VLG +TGNEKP    ++   S     +  +   +++L +   + +  +I+
Sbjct: 19  AVIIFLQLRNVLGCRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 78

Query: 76  ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
           ++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   VY
Sbjct: 79  KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 138

Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
           + F  ++  R+   + V+SS VGID   I  A ++ +  ++T+ IV Q IS++ D+D  +
Sbjct: 139 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 198

Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           I  DP+   ++ D+WTF R+    +PNW L++T+
Sbjct: 199 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATE 232


>gi|256258462|ref|ZP_05463998.1| calcium-binding EF-hand [Brucella abortus bv. 9 str. C68]
 gi|260884773|ref|ZP_05896387.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 9 str. C68]
 gi|260874301|gb|EEX81370.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 9 str. C68]
          Length = 231

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 124/214 (57%), Gaps = 4/214 (1%)

Query: 20  TFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
              +FLQLR VLG++TGNEKP    ++   S     +  +   +++L +   + +  +I+
Sbjct: 15  AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74

Query: 76  ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
           ++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   VY
Sbjct: 75  KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134

Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
           + F  ++  R+   + V+SS VGID   I  A ++ +  ++T+ IV Q IS++ D+D  +
Sbjct: 135 EGFVAAIDEREKWGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 194

Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           I  DP+   ++ D+WTF R+    +PNW L++T+
Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATE 228


>gi|148559170|ref|YP_001259879.1| hypothetical protein BOV_1994 [Brucella ovis ATCC 25840]
 gi|148370427|gb|ABQ60406.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
          Length = 231

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 123/214 (57%), Gaps = 4/214 (1%)

Query: 20  TFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
              +FLQLR VLG++TGNEKP    ++   S     +  +   +++L +   + +  +I+
Sbjct: 15  AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74

Query: 76  ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
           ++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   VY
Sbjct: 75  KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDRKVLKNLLSKDVY 134

Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
           + F  ++  R+   + V+SS VGID   I  A ++ +  ++T+ IV Q IS+  D+D  +
Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSILDRDGKV 194

Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           I  DP+   ++ D+WTF R+    +PNW L++T+
Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATE 228


>gi|114706069|ref|ZP_01438972.1| Calcium-binding EF-hand [Fulvimarina pelagi HTCC2506]
 gi|114538915|gb|EAU42036.1| Calcium-binding EF-hand [Fulvimarina pelagi HTCC2506]
          Length = 229

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 126/233 (54%), Gaps = 23/233 (9%)

Query: 19  ITFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERG---------IITLGKGKKK 68
           +   V  QL  VLG++TGNE+P F  +   +     RD  G         ++TL   +  
Sbjct: 1   MAAIVLFQLYNVLGRRTGNERPPFDPYTRNR----SRDRSGESEDAAGDNVVTLPNRRAN 56

Query: 69  D-NLD--------SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
           D N D         I+ +   GT LNK +R I     +FDPK+FL  A+ +YE +VD+F 
Sbjct: 57  DRNEDVPAGVRYAEIDRVSETGTPLNKELRKIKDADPNFDPKEFLEGAKIAYEMVVDAFA 116

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +G  + +  L+   VY+ F  +++TR+ + + ++SS +GIDD KI++A +      +TIR
Sbjct: 117 QGDRNTLRNLLSPDVYEGFEAAIATREESGETMRSSFIGIDDAKIVSAELRGREALVTIR 176

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           IV + ISA+ + +  ++  D E   +V DIWTF R+    +PNW L+ T+  E
Sbjct: 177 IVSEMISATLNSNGDVLDGDMETVVEVRDIWTFGRDTKSRDPNWKLVGTESEE 229


>gi|240849776|ref|YP_002971164.1| putative translocase transmembrane protein [Bartonella grahamii
           as4aup]
 gi|240266899|gb|ACS50487.1| putative translocase transmembrane protein [Bartonella grahamii
           as4aup]
          Length = 230

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 130/223 (58%), Gaps = 5/223 (2%)

Query: 12  LILLFAFITFFV-FLQLRGVLGKKTGNEKPFSGFFS--GKYVFSKRDERGIITL--GKGK 66
           +IL+ A +   V F+QLR VLGK+ G EKP    +S   K          I++    K  
Sbjct: 5   VILVIALVVMVVIFVQLRNVLGKRIGFEKPPFDPYSRRSKKQVEAETADNIVSFPHQKNS 64

Query: 67  KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
           +KD+   I+++ P G+ LNK +R++  +   F P+ F+  A+ +YE IV +F +G  + +
Sbjct: 65  QKDDFSEIDKISPEGSILNKNLRELHKIDPQFSPQFFIKGAQIAYEMIVTAFAKGDRNQL 124

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
           + L+   V++ F  ++  R+ N++ ++ + VGI+ ++ + A+I+E    +TIRIV + IS
Sbjct: 125 KSLLCQDVFESFCTAIEQREKNKERIEFTFVGINKIEFVAAAIQEKDELLTIRIVSEMIS 184

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            +Y++    I  DP+   ++ DIWTFVRN   S+PNW L +T+
Sbjct: 185 VTYNEQGERIDGDPDAIVEIRDIWTFVRNSLSSDPNWKLFATE 227


>gi|92115749|ref|YP_575478.1| import inner membrane translocase, subunit Tim44 [Nitrobacter
           hamburgensis X14]
 gi|91798643|gb|ABE61018.1| import inner membrane translocase, subunit Tim44 [Nitrobacter
           hamburgensis X14]
          Length = 234

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 10/229 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64
           D   ++F  +  F+FL+LR VLG++TG+E+P     + + +   +D+  +   G      
Sbjct: 2   DIYTIIFLALAVFIFLRLRSVLGQRTGSERPPYDRATREVLHGTQDKNVVPMAGPVIDQA 61

Query: 65  -----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
                       D    L   GT L   +  I +  + FDPK F++ AR++YE IV +F 
Sbjct: 62  SSAPTADAASTPDRWKNLAEPGTPLALGLDAIAAHDSSFDPKHFISGARSAYEMIVLAFA 121

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
            G    ++ L+ S VY+ F+ ++  R+  E+  ++  V ID +++I A + ++   +T+R
Sbjct: 122 NGDRRTLKDLLSSDVYESFDAAIKDREKLEQKTETRFVSIDKVELIGAELRDSAEQLTVR 181

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            + Q IS + DK   ++  +PE    + D+WTF R+IP  +PNW L+ T
Sbjct: 182 FISQMISMTRDKTGAIVDGNPEKISDITDVWTFARDIPSRDPNWKLVGT 230


>gi|90420989|ref|ZP_01228893.1| conserved hypothetical protein, Tim44 domain [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90334767|gb|EAS48543.1| conserved hypothetical protein, Tim44 domain [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 238

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 123/234 (52%), Gaps = 17/234 (7%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG----IITLGKGK 66
           F  + F  +   V  QLR VLGK+TGNE+P    +S +   + RD+      ++TL   +
Sbjct: 3   FGTIFFIIVAAIVLFQLRSVLGKRTGNERPPFDPYSRRD--APRDDAARNDNVVTLPNRR 60

Query: 67  KKDNLD-----------SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115
               ++           +I+++   GT +N  +R I      FDPK+FL+ A+ +YE IV
Sbjct: 61  GGTEIEGEAAPAATPYEAIDKVAKPGTPVNAELRRIRDADPSFDPKEFLDGAKVAYEMIV 120

Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY 175
            +F +G    ++ L+   VYQ F  ++S R+  ++ ++ S VGIDD  I+ A  ++    
Sbjct: 121 TAFADGDRKLLKNLLSPDVYQGFEQAISEREQRDERMQFSFVGIDDATIVGAEQKDREAM 180

Query: 176 ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           +T+RIV Q ISA    D  ++  D E   +V D+WTF R+    +PNW L  T+
Sbjct: 181 VTLRIVAQVISAVVKPDETVVDGDLETVVEVKDVWTFARDTRSRDPNWKLAGTE 234


>gi|319406501|emb|CBI80142.1| Tim44 domain protein [Bartonella sp. 1-1C]
          Length = 230

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 119/210 (56%), Gaps = 4/210 (1%)

Query: 24  FLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFP 79
           F+QLR VLGK+ G EKP    +SG+        K D+   +      +K +   I+ + P
Sbjct: 18  FVQLRNVLGKRVGFEKPPFDSYSGYTKKPIEVEKNDKIVSLPDQSSSQKGDFSEIDAIAP 77

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
            G++LN  +R I      F P+ F+N  +  YE I+ +F +G  + +++ + S V++ F 
Sbjct: 78  EGSKLNSGLRSIRQFDPSFSPQFFVNGVQIVYEIIMTAFAQGDRNRLKEHLSSDVFESFC 137

Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199
           +++  R+ N + ++ + VGI  ++ I A +++    +T+RI+ + ISA+Y++    I  +
Sbjct: 138 EAIELREKNNERIQFTFVGISKIEFIAAEMQKEEALLTVRIISEMISATYNEQEECIEGN 197

Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           PE   ++ DIWTF+RNI   NPNW L +T+
Sbjct: 198 PEAIIEIRDIWTFIRNITSKNPNWKLFATE 227


>gi|319403587|emb|CBI77169.1| conserved hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 230

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 117/208 (56%), Gaps = 4/208 (1%)

Query: 26  QLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIG 81
           QLR VLGK+ G EKP    +SG+        K D+   +      +K +   I+ +   G
Sbjct: 20  QLRNVLGKRIGFEKPPFDSYSGYTKKPVEVEKNDKIVSLPDQSSSQKSDFSEIDAIASEG 79

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
           ++LN  +R I      F P+ F+N  +  YE I+ +F +G  + +++ + S V++ F ++
Sbjct: 80  SKLNSGLRSIRQFDPSFSPQFFVNGVQIVYEIIMTAFAQGDRNQLKEHLSSDVFESFCEA 139

Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201
           +  R+ N + ++ + VGI  ++ I A +++   ++T+RIV + ISA+Y++    I  +PE
Sbjct: 140 IELREKNNERIQFTFVGISKIEFIAAEMQKEEAFLTVRIVSEIISATYNEQEECIEGNPE 199

Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTK 229
              ++ DIWTFVRNI   NPNW L +T+
Sbjct: 200 AIIEIRDIWTFVRNITSKNPNWKLFATE 227


>gi|75674306|ref|YP_316727.1| hypothetical protein Nwi_0107 [Nitrobacter winogradskyi Nb-255]
 gi|74419176|gb|ABA03375.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 234

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 119/232 (51%), Gaps = 16/232 (6%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64
           D   ++F  +  F+FL+LR VLG++TG+E+P     + + +   +D   +   G      
Sbjct: 2   DIYTIIFLALAVFIFLRLRSVLGQRTGSERPPYDRATREVLGGTQDNNVVPVPGTVINQS 61

Query: 65  --------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116
                   G   D   S+ E    GT L   +  I +  + FDP  FL+ AR++YE IV 
Sbjct: 62  SAAPSADVGGAADRWKSVAEP---GTPLALGLDAIAAQDSSFDPAHFLSGARSAYEMIVL 118

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F  G    ++ L+ S VY+ F+ ++  R+  E+  ++  V ID +++I A + +    +
Sbjct: 119 AFANGDRRTLKDLLSSDVYESFDAAIKDRERLEQKTETRFVSIDKVELIGAEVRDGAEQL 178

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           T+R + Q IS + DK   ++  +PE    + D+WTF R+I   +PNW L+ T
Sbjct: 179 TVRFISQMISVTRDKTGAIVDGNPEKISDITDVWTFARDISSRDPNWKLVGT 230


>gi|146337371|ref|YP_001202419.1| hypothetical protein BRADO0204 [Bradyrhizobium sp. ORS278]
 gi|146190177|emb|CAL74169.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
          Length = 233

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 115/234 (49%), Gaps = 20/234 (8%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEK-PFSGFFSGKYVFSKRDERGIITLGK---- 64
           D   ++F  +  F+FL+LR VLG++TG+E+ PF    + +      D   +   G     
Sbjct: 2   DIYTIIFLGLAVFIFLRLRSVLGQRTGSERTPFD--RTARNAVGAPDNHVMPVPGAPLDP 59

Query: 65  ----------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
                     G   D    I E    GT L + +  I +    FDP+ FL  AR++YE I
Sbjct: 60  AGPSTGAADFGAPSDRWRGIAE---PGTPLARGLDAIAANDASFDPRHFLTGARSAYEMI 116

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
           V +F  G   A+  L+ S VY  F+  +  R+ NE+  ++  V ID  +++NA   + T 
Sbjct: 117 VLAFANGDRRALRDLLSSEVYDSFDAVIKDREKNEQKTETRFVSIDTAELVNAEARDRTA 176

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            +T+R V Q IS + DK   ++  +P+    + DIWTF R+    +PNW L+ T
Sbjct: 177 QLTVRFVSQMISVTRDKTGNIVDGNPDKVADITDIWTFARDTGSRDPNWKLVGT 230


>gi|90421823|ref|YP_530193.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris BisB18]
 gi|90103837|gb|ABD85874.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris BisB18]
          Length = 233

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
           D   ++F  +  F+FL+LR VLG+KTGNE+P     +   V   +D    +      +  
Sbjct: 2   DIYTIIFLALAVFIFLRLRNVLGQKTGNERPPFDRAARDVVRGAQDNVVPLPGAVVDQAP 61

Query: 70  NLDSINELFPI---------GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
              S + + P          GT L + +  IV+  + FDP+ FL  AR +YE IV +F  
Sbjct: 62  QTPSADVVPPTDRWKGVAEPGTPLAQGLNAIVAQDSSFDPQHFLTGARGAYEMIVLAFAN 121

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
           G   A++ L+   VY  F   +  R+  E+  ++  V ID  ++++A   +    +T+R 
Sbjct: 122 GDRRALKDLLSPEVYDSFEAVIREREKQEQKTETRFVSIDKAELVSAEARDRAAQLTVRF 181

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           V Q I+ + DK   ++  +P+    + D+WTF R++   +PNW L+ T
Sbjct: 182 VSQMITVTRDKTGAIVDGNPDKVADITDVWTFARDVGSRDPNWKLVGT 229


>gi|163757477|ref|ZP_02164566.1| hypothetical protein HPDFL43_18742 [Hoeflea phototrophica DFL-43]
 gi|162284979|gb|EDQ35261.1| hypothetical protein HPDFL43_18742 [Hoeflea phototrophica DFL-43]
          Length = 234

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 118/215 (54%), Gaps = 7/215 (3%)

Query: 22  FVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRD---ERGIITLGK----GKKKDNLDSI 74
            VF+QLR VLGK+TG+E+P       +     +D   +  ++TL +      + D   ++
Sbjct: 17  IVFIQLRAVLGKRTGHERPPREQMERRDQTDAQDGIDDPKVVTLPRRGREAAEPDAFAAV 76

Query: 75  NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134
           +     G+ LNK +R++V     F+PK+F+  A  +YE IV ++ +G    ++ L+   V
Sbjct: 77  DAYAEPGSDLNKGLRELVKADPSFNPKEFVGGATMAYEMIVSAYADGDRKTLKSLLSREV 136

Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNL 194
           +  F  ++  R++  + V+S+ VGI+   II A ++     +T+RI+ Q ISA+ DKD  
Sbjct: 137 FDGFVSAIDEREARGETVRSNFVGIEKANIIQAEMKGTEANVTLRIISQLISATLDKDGE 196

Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           ++  D      V D+WTF R+    +PNW LI+T+
Sbjct: 197 VVEGDLVEVTDVNDVWTFTRDTRSRDPNWRLIATE 231


>gi|163867402|ref|YP_001608597.1| hypothetical protein Btr_0112 [Bartonella tribocorum CIP 105476]
 gi|161017044|emb|CAK00602.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 230

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 127/223 (56%), Gaps = 5/223 (2%)

Query: 12  LILLFAFITFFV-FLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDE--RGIITLGKGK-- 66
           +IL+ A +   V F+QLR VLGK+ G EKP    +S +       E    I++    K  
Sbjct: 5   VILVIALVVMVVIFVQLRSVLGKRIGFEKPPFDPYSRRSKKQTEAETTENIVSFPHQKNL 64

Query: 67  KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
           +K +   I+E+ P G+ LN+ +R +  +   F P+ F+  A+ +YE IV +F +G    +
Sbjct: 65  QKGDFSEIDEIAPEGSILNENLRALRRIDPHFSPQSFIKGAQIAYEMIVTAFAKGDRSQL 124

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
           + L+   V++ F   +  R+ N++ ++ + VGI+ ++ ++A+I+E    +TIRI+ + IS
Sbjct: 125 KSLLCQDVFESFCAVIEQREKNKERIEFTFVGINKIEFVSAAIQEKDELLTIRIISEMIS 184

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            +Y++    I  +P+   ++ DIWTFVRN    +PNW L +T+
Sbjct: 185 VTYNEQGERIDGNPDAIVEIRDIWTFVRNSLSPDPNWKLFATE 227


>gi|85714085|ref|ZP_01045074.1| hypothetical protein NB311A_08013 [Nitrobacter sp. Nb-311A]
 gi|85699211|gb|EAQ37079.1| hypothetical protein NB311A_08013 [Nitrobacter sp. Nb-311A]
          Length = 234

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 118/229 (51%), Gaps = 10/229 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64
           D   ++F  +  F+FL+LR VLG++TG+E+P     + + +   +D+  +   G      
Sbjct: 2   DIYTIIFLALAVFIFLRLRSVLGQRTGSERPPYDGATREILRGAQDKNVVPVPGTVINQS 61

Query: 65  -----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
                     + D   +L   GT L   +  I +  + FDP  FL+ AR++YE IV +F 
Sbjct: 62  SATPTADVGPSADRWKDLTEPGTALALGLDAIAAQDSSFDPGHFLSGARSAYEMIVLAFA 121

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
            G    ++ L+ S VY+ F+ ++  R+  E+  ++  V ID +++I A + +    +T+R
Sbjct: 122 NGDRRTLKDLLSSDVYESFDAAIKDRERLEQKTETRFVSIDKVELIGAELRDGAEQLTVR 181

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            + Q IS + DK   ++  +PE    + D+WTF R I   +PNW L+ T
Sbjct: 182 FISQMISVTRDKTGAIVDGNPERISDITDVWTFAREISSRDPNWKLVGT 230


>gi|316931716|ref|YP_004106698.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
           palustris DX-1]
 gi|315599430|gb|ADU41965.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
           palustris DX-1]
          Length = 258

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 123/233 (52%), Gaps = 11/233 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL-GKGKKK 68
           D   ++F  +  F+FL+LR VLG++TGNE+P     + + + S + +  +I++ G    +
Sbjct: 25  DIYTIIFLALAVFIFLRLRNVLGQRTGNERPPFDRAAARDMISGKQDNNVISMPGTVIDQ 84

Query: 69  DNLDSINELFPIGTR----------LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
             +    ++ P   R          L   +  I    + FD + F++ A+++YE IV +F
Sbjct: 85  APIAPNADVVPPSDRWKGIAEPDSELEHGLNAIAQHDSSFDARHFVDGAKSAYEMIVMAF 144

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
             G   ++  L+ S VY+ F+ ++  R+ N+  V+S  V I+  ++I+A + + T  +T+
Sbjct: 145 ANGDRRSLRDLLSSEVYESFDAAIKDREKNDLKVESRFVAIEKAELISAELRDRTAMLTL 204

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           + V Q ISA+ DK   ++   P+    + D+WTF R+    +PNW L+ T  G
Sbjct: 205 KFVSQMISATRDKTGAVVDGSPDKVTDITDVWTFARDTSSRDPNWKLVGTGSG 257


>gi|91974901|ref|YP_567560.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris BisB5]
 gi|91681357|gb|ABE37659.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris BisB5]
          Length = 235

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 119/238 (50%), Gaps = 19/238 (7%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERGIITLG----K 64
           D   ++F  +  F+FL+LR VLG++TG+E+P F    +   +  K+D   +   G    +
Sbjct: 2   DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDNNVVPMPGTVIDQ 61

Query: 65  GKKKDNLDSINEL----------FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
                N D +              P+   LN V+    S    FD   FL  A+++YE I
Sbjct: 62  SPTAPNADVVPPSDRWKGIAEPDSPLAHGLNAVLVQDSS----FDANHFLTGAKSAYEMI 117

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
           V +F  G   A+  L+ + VY  F+ ++  R+ NE+  ++  V ID  +++ A + E+T 
Sbjct: 118 VMAFANGDRRALRDLLSTEVYDSFDAAIKDREKNERKTETRFVAIDKAELLGAEVREHTA 177

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            +T++ V Q IS + DK   ++  +P+    + D+WTF R+I   +PNW L+ T  G 
Sbjct: 178 QLTVKFVSQMISVTRDKAGAIVDGNPDKVADITDVWTFARDISSRDPNWKLVGTGSGH 235


>gi|115522403|ref|YP_779314.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris BisA53]
 gi|115516350|gb|ABJ04334.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris BisA53]
          Length = 233

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 118/239 (49%), Gaps = 23/239 (9%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRD------ERGIITLG 63
           D   ++F  +  F+FL+LR VLG++TG+E+P        Y  + RD      E  ++ + 
Sbjct: 2   DIYTIIFLALAVFIFLRLRNVLGQRTGDERP-------PYDRAARDLLRGSQEGNVVPMP 54

Query: 64  KGKKKDNLDSINELFPIGTRLNKV----------MRDIVSVYTDFDPKDFLNEARNSYEA 113
                  L    ++ P   R   V          +  I +  + FD + FL+ AR +YE 
Sbjct: 55  SPSIDPTLAPSADVTPPSDRWKSVAAPDSPLEHGLNAIAAHDSGFDAQHFLSGARGAYEM 114

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           IV +F  G   A++ L+ S VY  F  ++  R+ N+   ++  V ID  +++ A + + +
Sbjct: 115 IVLAFANGDRRALKDLLSSEVYDSFEAAIREREKNDHKTETRFVSIDKAELVTAEVRDRS 174

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
             +T+R V Q I+ + DK   ++  +P+    + D+WTF R++   +PNW L+ T  G+
Sbjct: 175 AQLTVRFVSQMITVTRDKTGAIVDGNPDKVADITDVWTFARDVASRDPNWKLVGTGSGQ 233


>gi|121602069|ref|YP_989543.1| Tim44 domain-containing protein [Bartonella bacilliformis KC583]
 gi|120614246|gb|ABM44847.1| Tim44 domain protein [Bartonella bacilliformis KC583]
          Length = 230

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 125/227 (55%), Gaps = 10/227 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKR----DERGIITLGKG 65
           D + ++   +   VF+QLR VLGK+TG E+P    +SG    SK+    D  G IT    
Sbjct: 4   DVVFVIALVVMVIVFVQLRNVLGKRTGFERPPFNPYSGH---SKKQVEADTTGDITSFPQ 60

Query: 66  K---KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
           +   +K +   I+ + P G+ LN  +R I    + F P+ F+N  + +YE I+ +F +G 
Sbjct: 61  QINAQKGDFSDIDAIAPKGSALNDGLRAIRQADSSFSPQFFINGVQVAYEMIMTAFAQGN 120

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
              +++L+   V++ F  ++  R+   + ++ + VGI+ ++ I A +++    +T+RIV 
Sbjct: 121 RDQLKELLSQNVFESFCKAIEQREKRNERIQFTFVGINKVEFIAAEMQKREELLTVRIVS 180

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           + IS  Y++    I  DPE   ++ D+WTFVR+    NPNW L +T+
Sbjct: 181 EIISVIYNEQEERIDGDPEAIVEIRDVWTFVRDSVSKNPNWKLFATE 227


>gi|319405014|emb|CBI78623.1| Tim44 domain protein [Bartonella sp. AR 15-3]
          Length = 230

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 115/206 (55%), Gaps = 4/206 (1%)

Query: 28  RGVLGKKTGNEKPFSGFFS--GKYVFSKRDERGIITL--GKGKKKDNLDSINELFPIGTR 83
           R VLGK+ G EKP    +S   K    +     I++L      KK+N   IN + P  + 
Sbjct: 22  RNVLGKRIGFEKPPFDSYSKHSKKQIERETSDNIVSLPDQSSSKKNNFSEINTIAPEKSA 81

Query: 84  LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
           LN  +R I    + F P+ F+N  +  YE I+ +F +G    +++ + S V++ F +++ 
Sbjct: 82  LNSGLRAISLADSSFSPQFFINGVQIVYEIIMTAFAQGNRDQLKEHLSSDVFESFCEAIE 141

Query: 144 TRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203
            R+ N + ++ + VGI+ ++ I A +++   ++T+RIV + ISA+Y++    I  DPE  
Sbjct: 142 QREKNNERIQFTFVGINKIEFIAAEMQKEEAFLTVRIVSEIISATYNEREEYIDGDPEAI 201

Query: 204 GKVIDIWTFVRNIPPSNPNWVLISTK 229
            ++ DIWTFVRN    NPNW L +T+
Sbjct: 202 IEIRDIWTFVRNTTSKNPNWKLFATE 227


>gi|254472289|ref|ZP_05085689.1| import inner membrane translocase, subunit Tim44 [Pseudovibrio sp.
           JE062]
 gi|211958572|gb|EEA93772.1| import inner membrane translocase, subunit Tim44 [Pseudovibrio sp.
           JE062]
          Length = 248

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 132/241 (54%), Gaps = 21/241 (8%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEK-PFSGFFSGKYVFSKR-----DERGIITL- 62
           D   ++F      +FL+LR VLG +TGNE+ PF  + + +   S++     +E  +I L 
Sbjct: 6   DVYNIIFLIAAVVIFLRLRSVLGNRTGNERQPFDPYSAQQKQDSQKTQAPENEDNVIPLP 65

Query: 63  -----------GKGKKKDNLDS-INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNS 110
                       + + ++ +++ I+++   GT LN  +R+I      F+PK+F+  AR +
Sbjct: 66  GSEHVHHDPERAEREAREQIEAEIDKVAKKGTDLNHGLREIWKAEPSFNPKEFVEGARGA 125

Query: 111 YEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA--S 168
           YE I+ SF +G    ++ L+   V+  F+ ++  R+S  + V+S+ VGID   I+ A  +
Sbjct: 126 YEIILMSFAQGDRRTLKDLLSPEVFTGFSAAIDDRESRNERVESTFVGIDKADIVEAVFN 185

Query: 169 IEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            +++   +T+R   Q I+A+ D +N ++  DP    ++ DIWTF R    ++PNW L++T
Sbjct: 186 QKDSLAEVTVRFKSQLITATRDSENRIVDGDPTAVSELTDIWTFARVTGVNDPNWKLVAT 245

Query: 229 K 229
           +
Sbjct: 246 E 246


>gi|148251774|ref|YP_001236359.1| hypothetical protein BBta_0156 [Bradyrhizobium sp. BTAi1]
 gi|146403947|gb|ABQ32453.1| hypothetical protein BBta_0156 [Bradyrhizobium sp. BTAi1]
          Length = 233

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 118/232 (50%), Gaps = 16/232 (6%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEK-PFSGFFSGKYVFSKRD----------ERG 58
           D   ++F  +  F+F++LR VLG++TG+E+ PF          +  +          +  
Sbjct: 2   DIYTIIFLALAVFIFVRLRAVLGQRTGSERTPFDRAARNAVQGAPDNHVMPVPGAPLDPA 61

Query: 59  IITLGK--GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116
           + T G   G   D    + E    GT L + +  +V+    FDP+ FL  AR++YE IV 
Sbjct: 62  VATAGAEPGVPSDRWRGVAEP---GTPLARGLDAVVANDPSFDPRHFLTGARSAYEMIVL 118

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F  G   A+  L+ S VY  F+  +  R+ +E+  ++  V ID  ++++A + + T  +
Sbjct: 119 AFANGDRRALRDLLSSEVYDSFDAVIKDREKHEQKTETRFVSIDTAELVSADLRDRTAQL 178

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           T+R V Q IS + DK   ++  +P+    + DIWTF R+    +PNW L+ T
Sbjct: 179 TVRFVSQMISVTRDKMGNIVDGNPDKVADITDIWTFARDTGSRDPNWKLVGT 230


>gi|298293768|ref|YP_003695707.1| import inner membrane translocase subunit Tim44 [Starkeya novella
           DSM 506]
 gi|296930279|gb|ADH91088.1| import inner membrane translocase subunit Tim44 [Starkeya novella
           DSM 506]
          Length = 241

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 123/238 (51%), Gaps = 20/238 (8%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKG 65
           D   ++F  +  F+F++LR VLG++TG E+P    +S     K      D+  +++    
Sbjct: 3   DIYTIIFLALAVFIFIRLRSVLGQRTGRERPPYDPYSRRDPAKAPAGPADK--VVSFPGA 60

Query: 66  KKKDNLDSINE--------------LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY 111
            +K ++    E              +  +G+ +   +  I +    FD + FL  AR +Y
Sbjct: 61  AEKPSVPEPAEATESDEPAPARWAGVAEVGSAVANGLDAIAAQERGFDAQHFLTGARAAY 120

Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171
           E IV +F  G   A+++L+   V++ F+ +++ R+   + +++  VGI+ ++II A ++ 
Sbjct: 121 EMIVVAFANGDRAALKELLAREVFEGFSAAIAEREQRGEKMETQFVGIEKVEIIEAGVKG 180

Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            +  +T+R + Q IS + DK   +I  DPE    V D+WTF R +   +PNW L++T+
Sbjct: 181 RSAQMTLRFLSQLISVTRDKAGRVIDGDPEQVADVTDVWTFARELGTRDPNWKLVATE 238


>gi|13473820|ref|NP_105388.1| hypothetical protein mlr4544 [Mesorhizobium loti MAFF303099]
 gi|14024571|dbj|BAB51174.1| mlr4544 [Mesorhizobium loti MAFF303099]
          Length = 211

 Score =  117 bits (294), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 116/210 (55%), Gaps = 12/210 (5%)

Query: 30  VLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITL------GKGKKKDNLDSINELFP 79
           +LG++TG+E+P    +S   + K    K +   +++L      G+    D   +I+    
Sbjct: 1   MLGRRTGSERPPFDPYSAARTDKDATQKPE--NVVSLPRKRLPGEPAPADAYTAIDAFAK 58

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
             T LNK +R I      FDPK F++ A+ +YE IV ++ +G    ++ L+   V+  F 
Sbjct: 59  PDTDLNKGLRAIKDNDPSFDPKGFVDGAKMAYEMIVMAYADGDRKTLKNLLSREVFDGFV 118

Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199
            ++  R++  + ++SS VGID   I++A ++    ++T+RI+ + ISA+ DK   +I  D
Sbjct: 119 AAIGEREAKSEKIQSSFVGIDKADIVSAEMKGGEAHVTLRIISELISATRDKAGTVIDGD 178

Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           PE   +V D+WTF R+    +PNW LI+T+
Sbjct: 179 PETVAEVKDVWTFARDTRSRDPNWKLIATE 208


>gi|86747526|ref|YP_484022.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris HaA2]
 gi|86570554|gb|ABD05111.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris HaA2]
          Length = 235

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 116/230 (50%), Gaps = 11/230 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERGIITLGKGKKK 68
           D   ++F  +  F+FL+LR VLG++TG+E+P F    +   +  K+D   +   G    +
Sbjct: 2   DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDTNVVSMPGSVIDQ 61

Query: 69  DNLDSINELFPIGTR----------LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
             +    ++ P   R          L   +  + +  + FD   FL+ A+ +YE IV +F
Sbjct: 62  SPIAPSADVVPPSDRWKGIAEPDSPLEHGLNAVFTQDSSFDANHFLSGAKGAYEMIVMAF 121

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
             G   A++ L+ S VY+ F  ++  R+ NE   ++  V I+  +++ A + ++   +T+
Sbjct: 122 ANGDRRALKDLLSSEVYESFEAAIKDREKNELKTETRFVAIEKAELLGAEVRDHVAQLTV 181

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           + V Q IS + DK   ++   P+    + D+WTF R+I   +PNW L+ T
Sbjct: 182 KFVSQMISVTRDKAGAVVDGSPDKVADITDVWTFARDISSRDPNWKLVGT 231


>gi|192288736|ref|YP_001989341.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
           palustris TIE-1]
 gi|192282485|gb|ACE98865.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
           palustris TIE-1]
          Length = 235

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 119/233 (51%), Gaps = 11/233 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERGIITLGKGKKK 68
           D   ++F  +  F+FL+LR VLG++TG+E+P F    +   +  K+D   +   G    +
Sbjct: 2   DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDNNVVSMPGTVIDQ 61

Query: 69  DNLDSINELFPIGTR----------LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
             +    ++ P   R          L   +  I    + FD + F+  A+++YE IV +F
Sbjct: 62  APMAPNADVVPPSDRWKGIAEPDSELEHGLNAIAQNDSSFDAQHFITGAKSAYEMIVMAF 121

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
             G   ++  L+ S VY+ F+ ++  R+ N+  V++  V I+  ++I+A + + T  +T+
Sbjct: 122 ANGDRRSLRDLLSSEVYESFDAAIKDREKNDLKVETRFVSIEKAELISAELRDRTAMLTL 181

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           + V Q ISA+ DK   ++   P+    + D+WTF R+    +PNW L+ T  G
Sbjct: 182 KFVSQMISATRDKTGAVVDGSPDKVVDITDVWTFARDTSSRDPNWKLVGTGSG 234


>gi|319898295|ref|YP_004158388.1| hypothetical protein BARCL_0116 [Bartonella clarridgeiae 73]
 gi|319402259|emb|CBI75797.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
          Length = 230

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 115/208 (55%), Gaps = 8/208 (3%)

Query: 28  RGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITL--GKGKKKDNLDSINELFPIG 81
           R VLGK+ G EKP    +SG+   +      D   I++L      +K +   I+ + P G
Sbjct: 22  RNVLGKRIGFEKPPFDSYSGYPKKQIEVETTD--NIVSLPDQSSSQKSDFSEIDAIAPEG 79

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
           + LN  +R I      F P+ F+N  +  YE I+ +F +G    +++ + S V++ F  +
Sbjct: 80  SELNVSLRTIRQFDPSFSPRFFMNGVQIVYEMIMTAFAQGDRVKLKEHLSSDVFESFCAA 139

Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201
           +  R+ N + ++ + VGI+ ++ I A +++   ++T+RIV + ISA+Y++    I  +PE
Sbjct: 140 IEQREKNNERIQFTFVGINRIEFIAAEMQKKEAFLTVRIVSEMISATYNEQEECIDGNPE 199

Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTK 229
              ++ DIWTFVRN    +PNW L +T+
Sbjct: 200 AIIEIRDIWTFVRNTTSQSPNWKLFATE 227


>gi|209883544|ref|YP_002287401.1| import inner membrane translocase, subunit Tim44 [Oligotropha
           carboxidovorans OM5]
 gi|209871740|gb|ACI91536.1| import inner membrane translocase, subunit Tim44 [Oligotropha
           carboxidovorans OM5]
          Length = 234

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 114/232 (49%), Gaps = 10/232 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
           D   ++F  +  F+FL+LR VLG++TG+E+P     +     S  D   +   G    + 
Sbjct: 2   DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRITRDMARSGNDNNVVKMPGTTIDQT 61

Query: 70  NLDSINELFPIGTR----------LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
            L    +  P   R          L   + ++ +    F+ + F++ A+++YE IV +F 
Sbjct: 62  PLAPAADPIPAQDRWKGIAEPDTPLATGLDEVAAADPSFNAQHFVSGAKSAYEMIVQAFA 121

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
            G    ++ L+ + VY  F   +  R+   + V++    ID   +++A + +   ++T+R
Sbjct: 122 SGDRRMLKDLLSAEVYDGFEAVIKGREQRGEKVETRFASIDKAALVSAGVRDRIAHLTVR 181

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
            V Q I+ + DKD  +I  +PE    V D+WTF R++   +PNW L+ T+ G
Sbjct: 182 FVSQMITVTRDKDGAVIDGNPEKLTDVTDVWTFSRDVSSRDPNWKLVGTESG 233


>gi|39933380|ref|NP_945656.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
           palustris CGA009]
 gi|39653005|emb|CAE25747.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
          Length = 289

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 119/233 (51%), Gaps = 11/233 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERGIITLGKGKKK 68
           D   ++F  +  F+FL+LR VLG++TG+E+P F    +   +  K+D   +   G    +
Sbjct: 56  DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDNNVVSMPGTVIDQ 115

Query: 69  DNLDSINELFPIGTR----------LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
             +    ++ P   R          L   +  I    + FD + F+  A+++YE IV +F
Sbjct: 116 APMAPNADVVPPSDRWKGIAEPDSELEHGLNAIAQNDSSFDAQHFITGAKSAYEMIVMAF 175

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
             G   ++  L+ S VY+ F+ ++  R+ N+  V++  V I+  ++I+A + + T  +T+
Sbjct: 176 ANGDRRSLRDLLSSEVYESFDAAIKDREKNDLKVETRFVSIEKAELISAELRDRTAMLTL 235

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           + V Q ISA+ DK   ++   P+    + D+WTF R+    +PNW L+ T  G
Sbjct: 236 KFVSQMISATRDKTGAVVDGSPDKVVDITDVWTFARDTSSRDPNWKLVGTGSG 288


>gi|299133204|ref|ZP_07026399.1| import inner membrane translocase subunit Tim44 [Afipia sp. 1NLS2]
 gi|298593341|gb|EFI53541.1| import inner membrane translocase subunit Tim44 [Afipia sp. 1NLS2]
          Length = 234

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 116/235 (49%), Gaps = 14/235 (5%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
           D   ++F  +  F+FL+LR VLG++TG+E+P     +     +  D   +   G    + 
Sbjct: 2   DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPYDRVTRDVAPTGNDNNVVRMPGTAVDQA 61

Query: 70  NLDSINELFPIGTR------------LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117
            L    +  P+  R            L   +  + +    F+ + F++ A+++YE IV +
Sbjct: 62  TLAPSAD--PVSPRERWKGIAAPDSELASGLDQVAAADPSFNAQHFISGAKSAYEMIVLA 119

Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
           F  G    ++ L+ S VY  F   +  R+   + V++    ID  ++++A + +   ++T
Sbjct: 120 FANGDRRTLKDLLSSDVYDGFEAVIKGREQQGEKVETKFASIDKAELVSAGVRDKLAHLT 179

Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           +R V Q I+A+ DKD  +I  +PE    V D+WTF R++   +PNW L+ T+ G 
Sbjct: 180 VRFVSQMITATRDKDGAVIDGNPEKLTDVTDVWTFSRDVSSRDPNWKLVGTESGH 234


>gi|154245991|ref|YP_001416949.1| import inner membrane translocase subunit Tim44 [Xanthobacter
           autotrophicus Py2]
 gi|154160076|gb|ABS67292.1| import inner membrane translocase subunit Tim44 [Xanthobacter
           autotrophicus Py2]
          Length = 250

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 116/234 (49%), Gaps = 11/234 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKR--DERGIITLGKGKK 67
           D   ++F  +  F+F++LR VLG++TG E+P    +S       +   ++ +    +   
Sbjct: 17  DIYTIIFLALAVFIFVRLRSVLGQRTGRERPPYDPYSRDTARPPQPASDKVVPLPERPVS 76

Query: 68  KDNLDSINELFPI---------GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
                 ++E  P          G+     + +I  +  DFD + FL  AR +YE IV +F
Sbjct: 77  PPAASPVDEAPPAYRWEGVAQEGSATAAALDEIARIEPDFDARHFLTGARAAYEMIVTAF 136

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
             G   A++ L+   VY  F  +++ R+S  + ++S  V ++  ++ + ++ + +  +T+
Sbjct: 137 AAGDRRALKDLLAKDVYDGFVSAIADRESRRETMESRFVAVEQAELQDVTVRDRSAQLTV 196

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           R V + IS +   D  ++   P+    V D+WTF R++   +PNW L++T+  +
Sbjct: 197 RFVSKLISVTRGPDGAVVDGSPDTVADVTDVWTFARDLGTRDPNWKLVATEAAQ 250


>gi|158426224|ref|YP_001527516.1| mitochondrial import inner membrane translocase [Azorhizobium
           caulinodans ORS 571]
 gi|158333113|dbj|BAF90598.1| mitochondrial import inner membrane translocase [Azorhizobium
           caulinodans ORS 571]
          Length = 279

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 122/237 (51%), Gaps = 16/237 (6%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL----GKG 65
           D   ++F  +  F+F++LR VLG++TG E+P    F+ +   +   +  +++L    G  
Sbjct: 45  DIYTIIFLALAVFIFVRLRSVLGQRTGKERPPYDPFTPRPPAAPSSD-NVVSLPERVGDA 103

Query: 66  KKKDNLDSINELFP----------IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115
            ++     +++  P           G+ L + +  I ++  DFD K F+  A+++YE IV
Sbjct: 104 PQRPTA-PVSQPLPGTFRWKGVTEEGSPLAEALDQIAAIEPDFDAKHFVEGAKSAYEMIV 162

Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY 175
            +F  G    ++ L+   V+  F  ++S R+   + ++S  V I+  +II AS+   T  
Sbjct: 163 LAFAAGDRRTLKDLLSKDVFDGFVAAISEREGRGETMESRFVAIEKAEIIEASVRGRTGQ 222

Query: 176 ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           +T+R V + ISA+  +D  ++    +    V D+WTF R +   +PNW L++T+  +
Sbjct: 223 VTLRFVSKIISATRSRDGAVVDGSADTVADVTDVWTFARELGARDPNWKLVATEAAQ 279


>gi|304392739|ref|ZP_07374679.1| import inner membrane translocase, subunit Tim44 [Ahrensia sp.
           R2A130]
 gi|303295369|gb|EFL89729.1| import inner membrane translocase, subunit Tim44 [Ahrensia sp.
           R2A130]
          Length = 230

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 14/230 (6%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
           D   LL      F+F +LR VLG + G EKP    ++            ++TL   K+ +
Sbjct: 2   DLFTLLPLLAAVFLFWKLRSVLGTRNGIEKPPYDPYTND---PNEAADNVVTLPGAKRAN 58

Query: 70  NLDS-----------INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
             D+           I +L      L + +  I S    FDP++FL   R +YE IV  F
Sbjct: 59  APDAEEDAGEAARKRIGKLAGKDKSLERGLLAIHSRDPGFDPEEFLQGGRMAYEMIVTGF 118

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
            +G    +E L+   VY+ F   +  R    + V +S VGID   I  A +  +   IT+
Sbjct: 119 ADGDKRTLENLLSREVYESFATVIDERSERGEKVNASFVGIDKAVIEGAEVLRDEAQITV 178

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           R V + ISA+ D  + +I  D +   +V D+WTF R +   +PNW L++T
Sbjct: 179 RFVSEMISATLDSSDEVIEGDLQEVAEVTDVWTFARPVKSRDPNWKLVAT 228


>gi|83313642|ref|YP_423906.1| hypothetical protein amb4543 [Magnetospirillum magneticum AMB-1]
 gi|82948483|dbj|BAE53347.1| Uncharacterized protein [Magnetospirillum magneticum AMB-1]
          Length = 281

 Score =  108 bits (269), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 115/220 (52%), Gaps = 11/220 (5%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           I+ FA +  F+ L+LR VLGK+TG E+P       ++   +     ++ L   ++     
Sbjct: 72  IVFFAMVAAFLVLRLRSVLGKRTGAERP-----PEQWTPPEAAADNVVDLQSVRR----- 121

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
           S +E  P  T + + +  I +    FD   FL  A+ ++E IV +F  G    ++ L+  
Sbjct: 122 SASEP-PAETPMGQGLAAIRAADRGFDLDGFLGGAKAAFEMIVIAFAHGDKATLQPLLAP 180

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            VY+ F+D++  R+ + + +++ LVGI   +++ A ++     +TIR V + ++A  D  
Sbjct: 181 DVYRHFSDAIDARRQHGETLQTELVGIRTAELVEAGMDGRFAALTIRFVSEQVNALRDAK 240

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
             ++  +PE    VID+WTF R+   ++PNW L +T   E
Sbjct: 241 GEVVEGNPERVIDVIDLWTFRRDTRSADPNWALAATHTPE 280


>gi|163850987|ref|YP_001639030.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           extorquens PA1]
 gi|218529814|ref|YP_002420630.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           chloromethanicum CM4]
 gi|240138118|ref|YP_002962590.1| hypothetical protein MexAM1_META1p1451 [Methylobacterium extorquens
           AM1]
 gi|254560680|ref|YP_003067775.1| hypothetical protein METDI2225 [Methylobacterium extorquens DM4]
 gi|163662592|gb|ABY29959.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           extorquens PA1]
 gi|218522117|gb|ACK82702.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           chloromethanicum CM4]
 gi|240008087|gb|ACS39313.1| conserved hypothetical protein, putative membrane protein
           [Methylobacterium extorquens AM1]
 gi|254267958|emb|CAX23826.1| conserved hypothetical protein, putative membrane protein
           [Methylobacterium extorquens DM4]
          Length = 239

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 110/240 (45%), Gaps = 17/240 (7%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEK------------PFSGFFSGKYV--F 51
            DS D   L+F  +  FV  +LR VLG+KTG E+            P +G   G  V   
Sbjct: 2   QDSFDATTLIFLALAVFVIWRLRSVLGQKTGTERSPFRPVERNRTEPPAGRGEGDNVVRL 61

Query: 52  SKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY 111
              D              +   I E    G+ + + +  +V +   F+P+ FL  A+ +Y
Sbjct: 62  PGADRSPAGAAAVQTAARDWRGIAE---PGSAVARGLEQVVQLEPAFEPRAFLEGAKGAY 118

Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171
           E IV +F +G    +  L+   V + F  ++S R+   +  +++ + ID  +I    ++ 
Sbjct: 119 ETIVTAFAKGDRKTLRALLSREVCEGFERAISEREKRNETAETTFISIDKAEIAAVEVKN 178

Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
               IT+R +   I+A+ D D  +I  + E   +V D+WTF R +   +PNW L++T  G
Sbjct: 179 RAAQITVRFLSNLITATRDADGKVIDGNAETGVEVPDVWTFARTLGSRDPNWQLVATDAG 238


>gi|170750111|ref|YP_001756371.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656633|gb|ACB25688.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           radiotolerans JCM 2831]
          Length = 237

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 114/235 (48%), Gaps = 9/235 (3%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEK-PFSGFFSGKYVFSKR-DERGIITLG 63
            DS D   ++F  +  FV  +LR VLG+KTG E+ PF      +     R D   ++ L 
Sbjct: 2   QDSFDVTTIIFLALAVFVIWRLRSVLGQKTGAERSPFKPVDRSRTEPQARSDGDNVVRLP 61

Query: 64  KGKKKDNLDSINE-------LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116
              +                +   G+ + + +   +     FDP+ F+  A+++YEAI+ 
Sbjct: 62  GADRVQAAPPPAAAPRDWRGIAEPGSEVARGLEACIQAEPSFDPRAFIEGAKSAYEAIMI 121

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F +G    +  L+   V + F  +++ R+ N + ++++ V ID  +I+   +     ++
Sbjct: 122 AFAKGDRKTLRGLLSKEVGEAFERAIAERERNRQTLETTFVSIDKAEIVAVEVRNRVAHV 181

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           T+R +   I+A+ + D  ++    E   +V D+WTF R +   +PNW L++T+ G
Sbjct: 182 TVRFLSNLITATRNADGKVVDGSAETVVEVPDVWTFARTLGSRDPNWQLVATEAG 236


>gi|188580934|ref|YP_001924379.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           populi BJ001]
 gi|179344432|gb|ACB79844.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           populi BJ001]
          Length = 242

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 108/240 (45%), Gaps = 14/240 (5%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEK------------PFSGFFSGKYV--F 51
            DS D   L+F  +  FV  +LR VLG+KTG E+            P +G   G  V   
Sbjct: 2   QDSFDATTLIFLALAVFVIWRLRSVLGQKTGTERSPFRPVERNRTEPPAGRGEGDNVVRL 61

Query: 52  SKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY 111
              D            +        +    + + + +  +V V   FDP+ FL  A+ +Y
Sbjct: 62  PGADRAQAGAQAGTATQTATRDWRGIAEPNSAVARGLEQVVQVEPGFDPRAFLEGAKGAY 121

Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171
           E IV +F +G    +  L+   V + F  ++S R+   +  +++ + ID  +I    ++ 
Sbjct: 122 ETIVTAFAKGDRKTLRALLSREVCEGFERAISEREKRRETAETTFISIDKAEIAAVEVKN 181

Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
               IT+R +   I+A+ D D  +I  + E   +V D+WTF R +   +PNW L++T  G
Sbjct: 182 RAAQITVRFLSNLITATRDADGKVIDGNAETGVEVPDVWTFARTLGSRDPNWQLVATDAG 241


>gi|46201691|ref|ZP_00054533.2| COG4395: Uncharacterized protein conserved in bacteria
           [Magnetospirillum magnetotacticum MS-1]
          Length = 219

 Score =  105 bits (262), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 113/217 (52%), Gaps = 11/217 (5%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           I+ FA +  F+ L+LR VLGK+TG E+P       K+   +     ++ L   ++     
Sbjct: 10  IVFFAMVAAFLVLRLRSVLGKRTGTERP-----PEKWSPVEAPADNVVDLQSVRR----- 59

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
           S +E  P  T L + +  I +    FD   FL  A+ ++E IV +F  G    ++ L+  
Sbjct: 60  SASEP-PAETPLGQGLAAIRAADRGFDLDGFLGGAKAAFEMIVIAFAHGDKATLQPLLAP 118

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            VY+ F++++  R+ + + +++ LVGI   +++ A ++     +TI+ V + ++A  D  
Sbjct: 119 DVYRHFSEAIDARRQHGETLQTELVGIRSAELVEAGMDGRFAALTIKFVSEQVNALRDAK 178

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
             ++  +PE    VID+WTF R+    +PNW L +T 
Sbjct: 179 GEVVEGNPERVIDVIDLWTFRRDTRSPDPNWALTATH 215


>gi|217977326|ref|YP_002361473.1| import inner membrane translocase subunit Tim44 [Methylocella
           silvestris BL2]
 gi|217502702|gb|ACK50111.1| import inner membrane translocase subunit Tim44 [Methylocella
           silvestris BL2]
          Length = 239

 Score =  105 bits (261), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 112/230 (48%), Gaps = 11/230 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERG---IITL--- 62
           D   ++FA +  FV  +LR +LG +TG EKP  + F +G+   +KR   G   +I L   
Sbjct: 6   DVSTIIFALLAAFVVWKLRSILGARTGTEKPPRNPFIAGEPSAAKRPGEGEGKVIPLPGA 65

Query: 63  -GKGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
                +    D  +   P    G++    +  I +    F+ K FL  A+ +YE IV  F
Sbjct: 66  SAPIAQAAAADPSSRWKPHAEPGSKAWAGLDAIAAADRSFEIKSFLEGAKTAYEMIVIGF 125

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
            +G    ++ L+D  VY  F  +L+ R+     +++S V ID+  I +A +      I +
Sbjct: 126 ADGDRPMLQNLLDKSVYDSFVTALTEREKRGDKIETSFVAIDNGAIADAELNGRMAEIAV 185

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           R   Q I+A+ +    +I  +PE   ++ D W F R++   +PNW LIST
Sbjct: 186 RFSAQIITATRNAAGTVIEGNPEQVVEINDTWRFARDVGARDPNWRLIST 235


>gi|260429391|ref|ZP_05783368.1| transporter, Tim44 family [Citreicella sp. SE45]
 gi|260420014|gb|EEX13267.1| transporter, Tim44 family [Citreicella sp. SE45]
          Length = 219

 Score =  104 bits (260), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 111/220 (50%), Gaps = 14/220 (6%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER--GIITLGKGKKKDN 70
           +L+ A I  F+ L+LR VLG + G EKP +         +KRD+R      +  G   D 
Sbjct: 8   LLVLAGIAIFLILRLRSVLGTRDGFEKPEA------PAPAKRDDRKRDFEVIEGGPDHDI 61

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
            D + E  P    L K+ R    +   F+  +FL+ AR +YE I+  F  G++  ++  +
Sbjct: 62  TDHVPENSPAAEALAKMKR----IEPSFNVTEFLSGARGAYEMILMGFDNGEIEDLKPFL 117

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQFISAS 188
              +Y+ F+D +  R      V++  VG+ ++ +++AS +E      IT++ VG+  S  
Sbjct: 118 SDEIYETFSDVIEQRGQQGLTVEAEFVGVRELSLVDASFDETRQLAEITVKYVGELTSVV 177

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            +    ++  +P    +  D+WT+ RN+   +PNW L++T
Sbjct: 178 KNAAGEIVEGNPRTVKRQKDVWTYARNMGTDDPNWQLVAT 217


>gi|182680015|ref|YP_001834161.1| import inner membrane translocase subunit Tim44 [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182635898|gb|ACB96672.1| import inner membrane translocase subunit Tim44 [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 260

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 108/242 (44%), Gaps = 20/242 (8%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKY--VFSKRDE----------- 56
           D  I++FA +  F+  +LR VLG + GNE+P      G++  +FS + +           
Sbjct: 8   DMSIVIFALLAAFLIWKLRSVLGTRQGNEEPRDNSVPGQWPSLFSPKSQDPSQANKNGAP 67

Query: 57  -------RGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN 109
                  R       G   +   + +      +     +  I      F P  FL  AR+
Sbjct: 68  GQPTFPNRPSPAGASGAPAEAGRNWSAFVEPNSPAAAGLEAIAKADPAFAPGPFLEGARH 127

Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
           +YE IV++F EG+  A+  L+   VY  F  +++ R+S    V+ + V +D  KI  A++
Sbjct: 128 AYEMIVNAFAEGQRSALANLLVRDVYAGFEAAITERESQGHKVELTFVSLDAAKIEEAAL 187

Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                 IT+R   + I  + D    ++   P+    V D+WTF R I   +PNW L +TK
Sbjct: 188 FHQIAEITLRYKAKMIKVTRDAQGAVVEGSPDHVVDVDDLWTFERMIGSQDPNWKLAATK 247

Query: 230 LG 231
            G
Sbjct: 248 TG 249


>gi|170739669|ref|YP_001768324.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           sp. 4-46]
 gi|168193943|gb|ACA15890.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           sp. 4-46]
          Length = 238

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 116/240 (48%), Gaps = 17/240 (7%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKP-FSGFFSGKY-VFSKRDERGIITLG 63
            DS D   L+F  +  FV  +LR VLG+KTG+E+P F+     +        E  ++ L 
Sbjct: 3   QDSLDLTTLIFLGLAVFVIWKLRAVLGQKTGHERPPFNPLVRRREEPPPAAREDNVVRLP 62

Query: 64  KGKKKD----------NLDSINELFPIGTR-LNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
            G  +           N   + E      R L+ V++        FDP+ F + A+ +YE
Sbjct: 63  AGGDRTAAAPVATVPRNWKGVVEPNSAAARGLDLVLQQ----EPGFDPRAFTDGAKIAYE 118

Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
            IV +F +G    ++ L+   V + F  ++  R+   ++V+++ V ID  +I+   +   
Sbjct: 119 TIVMAFAKGDRRTLKSLLSREVAEGFERAIQARERAGQSVETTFVSIDRAEIVGVDLRNR 178

Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
              IT+R + + I+A+ +    ++   P+    V D+WTF R +   +PNW L++T+ G+
Sbjct: 179 VAQITVRYLSKLITATRNAQGAVVDGSPDTVVDVTDVWTFARTLGSRDPNWQLVATEAGQ 238


>gi|126724535|ref|ZP_01740378.1| import inner membrane translocase, subunit Tim44 [Rhodobacterales
           bacterium HTCC2150]
 gi|126705699|gb|EBA04789.1| import inner membrane translocase, subunit Tim44 [Rhodobacterales
           bacterium HTCC2150]
          Length = 236

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 117/228 (51%), Gaps = 10/228 (4%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
           F KM S    +L+ A I  F+ L+L+ VLG + G EKP +    G+   S R +  ++  
Sbjct: 15  FTKMGSSMIQLLVLAGIAVFLILRLKNVLGTREGFEKPRAP--QGQAQQSNRPQLEVVEN 72

Query: 63  GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
           G  +       I E   I +     + +I +   +F  ++FL  A+ +YE I+ +F  GK
Sbjct: 73  GPDQ------DIAEYVEIDSEAGMALAEIKAQDRNFTVQEFLGGAKGAYEMILIAFEGGK 126

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRI 180
           +  +E  +   V + F + ++ R+     V ++ +G+ +M + +A+++   N   +T++ 
Sbjct: 127 LSDVEPFLSEEVMESFVEVVADREDQGLTVTANFIGLREMAVHDATLDPITNIAEVTVKF 186

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           VG+  S  ++ +  ++  D +   +  DIWTF R++   NPNW L++T
Sbjct: 187 VGEMTSVVHNAEGEVVEGDEKTIKRQKDIWTFARDLGDDNPNWQLVAT 234


>gi|99082695|ref|YP_614849.1| import inner membrane translocase, subunit Tim44 [Ruegeria sp.
           TM1040]
 gi|99038975|gb|ABF65587.1| import inner membrane translocase subunit Tim44 [Ruegeria sp.
           TM1040]
          Length = 218

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 117/225 (52%), Gaps = 11/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG + G EKP     S +   ++  +R    +   
Sbjct: 1   MESPLIELLVLAGIAVFLILRLKSVLGTREGFEKP--PLASSE---TRAPQRKFEVIEGS 55

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D +  ++E    G+  +K + D+    + F   +F+  AR +YE I+  F  G++  
Sbjct: 56  PDDDIIAYVDE----GSPQSKALSDMKRSDSSFQVAEFVQGARGAYEMILMGFETGELDG 111

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQ 183
           I+  +   ++Q F D++S R+     +++  +G+ +  II+A+ +   +T  IT+R VG+
Sbjct: 112 IQPFISDDIFQSFVDAVSAREDQGLTIEAEFIGVRETSIIDATFDTATSTAEITVRFVGE 171

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             SA  ++   ++  DP+   +  D WTF R +   +PNW+L++T
Sbjct: 172 LTSAVRNRAGEIVEGDPKAVKRQKDTWTFSRQMGTGDPNWLLVAT 216


>gi|260431955|ref|ZP_05785926.1| transporter, Tim44 family [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415783|gb|EEX09042.1| transporter, Tim44 family [Silicibacter lacuscaerulensis ITI-1157]
          Length = 219

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 112/225 (49%), Gaps = 10/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG + G EKP       +   + +  R    +  G
Sbjct: 1   MNSPLIQLLVLAGIAIFLILRLKSVLGTREGFEKPPVP----QQPAASKSRRDFEVIDGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
             +D  D + E   I   L  + R    V   F   +FL  AR++YE IV  F  G +  
Sbjct: 57  PDRDITDHVPEDSEIAQTLAAMKR----VEPSFSVSEFLQGARSAYEMIVMGFERGNLDE 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           I+  +   V++ F   ++ R+    ++++  +G+ +M +++A  +++T    IT+R VG+
Sbjct: 113 IQPFLSEEVFETFVSVVAEREDKGLSIEAEFIGVREMALVDAQFDKDTNRAEITVRFVGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             S   D+D  ++  +P    +  D WTF R +   +PNW+L++T
Sbjct: 173 LTSVVRDRDGNIVEGNPNTIKRQKDSWTFARVMGADDPNWLLVAT 217


>gi|220921009|ref|YP_002496310.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           nodulans ORS 2060]
 gi|219945615|gb|ACL56007.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           nodulans ORS 2060]
          Length = 241

 Score =  101 bits (251), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 113/244 (46%), Gaps = 21/244 (8%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERG---IIT 61
            DS D   L+F  +  FV  +LR VLG+KTGNE+P F+     +         G   ++ 
Sbjct: 2   QDSLDLTTLIFLGLAVFVIWKLRSVLGQKTGNERPPFNPLLRRREEPPPAPREGGDNVVR 61

Query: 62  LGKGKKKD------------NLDSINEL-FPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR 108
           L                   N   + E   P    L+ V++   S    FDP+ F + A+
Sbjct: 62  LPGAGADRGAAAPVAATVPRNWKGVVEPNSPAARGLDLVLQQEPS----FDPRAFTDGAK 117

Query: 109 NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS 168
            +YE IV +F +G    ++ L+   V   F  ++  R+   + V+++ V ID  +I+   
Sbjct: 118 VAYETIVMAFAKGDRKTLKSLLSREVADGFERAIQARERAGQTVETTFVSIDRAEIVGVD 177

Query: 169 IEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           +      IT+R + + I+A+ +    ++   P+    V D+WTF R +   +PNW L++T
Sbjct: 178 VRNRVAQITVRFLSKLITATRNPQGAVVDGSPDTVVDVTDVWTFARTLGSRDPNWQLVAT 237

Query: 229 KLGE 232
           + G+
Sbjct: 238 EAGQ 241


>gi|312115344|ref|YP_004012940.1| import inner membrane translocase subunit Tim44 [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311220473|gb|ADP71841.1| import inner membrane translocase subunit Tim44 [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 233

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 115/224 (51%), Gaps = 12/224 (5%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK-----GKK 67
           ILL A +   +FL+LR VLG++TG+E+     ++ +     RD   ++ L +     G  
Sbjct: 11  ILLLA-VAVAIFLRLRSVLGRRTGDEETRLDNYA-RDAAPTRD--NVVPLPRAEPRPGGA 66

Query: 68  KDNLDSINELF---PIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
                S++E     P  + +   +R I +    FD   F+N A+ +YE+I+ ++ +G   
Sbjct: 67  PSAGPSVDERLGNVPADSAVRAPLRQIATSDPSFDTASFVNGAKIAYESIITAYAKGDRE 126

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
            +  L+   V+  FN  ++ R+++ + V+   +GI   +I+ A +      + +R V   
Sbjct: 127 TLRHLLAPEVFDSFNVVINDREASGETVEFHFIGISSSEIVEAQLLGRVAQVKVRFVSDL 186

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           ++A+ DK   ++  D +   +V DIWTF R++   NPNW L++T
Sbjct: 187 VTATRDKHGEVVDGDDKAVRQVTDIWTFSRDVSSPNPNWQLVAT 230


>gi|146278709|ref|YP_001168868.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145556950|gb|ABP71563.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 219

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 115/225 (51%), Gaps = 10/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M S    +L+ A I  F+ ++L+ VLG + G EKP       +     R  R    +  G
Sbjct: 1   MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPPVPLEDPR----PRPRREFEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
             +D +D + +    G+   K +  +      F   +FL  AR +YE IV +F +G++  
Sbjct: 57  PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLTGARGAYEMIVMAFEKGELEQ 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQ 183
           I   + + V++ F D+++ R++   +V+++ +G+ ++ I  AS E ++    I +R VG+
Sbjct: 113 IRPFLSAEVFESFEDAVNAREAEGLSVEANFLGLREIDIHEASFERDSRIGQIAVRFVGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             S   +++  ++   P    +  D+WTF R++  ++PNW L++T
Sbjct: 173 LTSVVRNREGQVVEGSPTEIKRQRDVWTFERHMGANDPNWQLVAT 217


>gi|77464817|ref|YP_354321.1| hypothetical protein RSP_1239 [Rhodobacter sphaeroides 2.4.1]
 gi|77389235|gb|ABA80420.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
          Length = 219

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 112/225 (49%), Gaps = 10/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M S    +L+ A I  F+ ++L+ VLG + G EKP       K     R  R    +  G
Sbjct: 1   MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPAVPLEDPK----PRTRRDFEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
             +D +D + +    G+   K +  +      F   +FL  AR +YE IV +F +G++  
Sbjct: 57  PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLTGARGAYEMIVMAFEKGELEQ 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQ 183
           I   + S V++ F +++  R++   +V+++ +G+ ++ I  AS + +T    + +R VG+
Sbjct: 113 IRPFLSSDVFESFEEAVKAREAEGLSVEATFLGLREIDIHEASFDRDTRVGQVAVRFVGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             S   D+   +I   P    +  D+WTF R +  ++PNW L++T
Sbjct: 173 LTSVVRDRTGQVIEGSPTEVKRQRDVWTFERRMGANDPNWQLVAT 217


>gi|259417909|ref|ZP_05741828.1| import inner membrane translocase, subunit Tim44 [Silicibacter sp.
           TrichCH4B]
 gi|259346815|gb|EEW58629.1| import inner membrane translocase, subunit Tim44 [Silicibacter sp.
           TrichCH4B]
          Length = 218

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 119/226 (52%), Gaps = 13/226 (5%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG + G EKP     +     + + +  +I   +G
Sbjct: 1   MESPLIELLVLAGIAVFLILRLKSVLGTREGFEKPP---LANNEAPAPQRKFEVI---EG 54

Query: 66  KKKDNLDS-INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
              D++ + ++E    G+   + + D+    + F   +F+  AR +YE I+  F  G++ 
Sbjct: 55  SPDDDIVAYVDE----GSPQAQALSDMKRADSSFQVAEFVQGARGAYEMILMGFETGELD 110

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVG 182
            I+  +   ++Q F D++S R+     +++  +G+ +  I++A+ +   +T  +T+R VG
Sbjct: 111 GIQPFISEEIFQSFVDAVSAREDQGLTIEAEFIGVRETTIVDATFDAATSTAEVTVRFVG 170

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           +  SA  ++   ++  DP+   +  D WTF R +   +PNW+L++T
Sbjct: 171 ELTSAVRNRAGEIVEGDPKAVKRQKDTWTFSRQMGTGDPNWLLVAT 216


>gi|144900161|emb|CAM77025.1| Mitochondrial import inner membrane translocase, subunit Tim44
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 243

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 110/223 (49%), Gaps = 12/223 (5%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDE----RGIITLGKGKK- 67
           I+ FA +  F+ L+LR VLGK+TGNE+P       ++  + +D+      +I L + ++ 
Sbjct: 10  IVFFAVVAVFLILRLRSVLGKRTGNEEP------PRWTRTPKDDGETADNVIDLTRARRP 63

Query: 68  -KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
            +   D   ++      L +    I +    F    FL+ AR ++E IV +F  G   A+
Sbjct: 64  VEAEPDVTADVAATAGPLARGEAAIRARDPSFSNTGFLSGARMAFEMIVGAFAAGDKKAL 123

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
             L+  +VY+ F D++  R    + + + ++GI   +II A +      +T+R V + I+
Sbjct: 124 RPLLADQVYKPFCDAIDARARAGEELSTEIMGIKSAEIIEAIMVGTVAQVTVRFVSEQIN 183

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
              D D  ++  DP     V D WTF R+    +PNW L +T+
Sbjct: 184 VIKDLDGRIVEGDPSRIVPVTDEWTFSRDTRSKDPNWHLSATR 226


>gi|84684638|ref|ZP_01012539.1| hypothetical protein 1099457000260_RB2654_13474 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667617|gb|EAQ14086.1| hypothetical protein RB2654_13474 [Rhodobacterales bacterium
           HTCC2654]
          Length = 219

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 12/226 (5%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII-TLGK 64
           M S    +++ A I  F+ L+LR VLG + G EKP       + V    D RG    +  
Sbjct: 1   MSSPIIQLIVLAAIAIFLILRLRDVLGTREGFEKPVVSRTESQRV----DNRGKFEVIEG 56

Query: 65  GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
           G   D  D + +   I     + +  +      F   DFLN AR +YE I+ +F  G++ 
Sbjct: 57  GPDTDITDHVEDPASI-----EALAKMKGAERSFAVGDFLNGARGAYEMILMAFEAGELD 111

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI--EENTVYITIRIVG 182
            I+  +   VY+ F   +  R+ +   + ++ VG+ +MK++ A    E     ITIR +G
Sbjct: 112 KIKPFLSDEVYESFATVVEQREKDGYKIDANFVGLREMKLVEAEFDDESREGEITIRFIG 171

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           +  S   DK   ++  +P    +  D+WTF R +   NPNW L++T
Sbjct: 172 EITSVVRDKSGEIVEGNPTEVKRQKDVWTFARIMGSENPNWQLVAT 217


>gi|114762187|ref|ZP_01441655.1| transporter, Tim44 family protein [Pelagibaca bermudensis HTCC2601]
 gi|114545211|gb|EAU48214.1| transporter, Tim44 family protein [Roseovarius sp. HTCC2601]
          Length = 219

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 14/220 (6%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDE--RGIITLGKGKKKDN 70
           +L+ A I  F+ L+LR VLG + G EKP S         S+RD+  R    +  G   D 
Sbjct: 8   LLVLAGIAIFLILRLRSVLGTRDGFEKPES------PSPSRRDDTARDFEVIEGGPDHDI 61

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           +D + E  P    L K+ R        F   +FL+ AR +YE I+  F  G++  ++  +
Sbjct: 62  IDHVPENSPAAEALAKMKR----AEPSFGVGEFLSGARGAYEMILMGFDNGEIEDLKPFL 117

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISAS 188
              +Y+ F+D +  R      +++  VG+ ++ +++A+ +  E    IT++ VG+  S  
Sbjct: 118 SDEIYETFSDVIEQRAQQGLTIEAQFVGVRELSLVDATFDDTERLAEITVKYVGELTSVV 177

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            +    +I   P    +  D+WT+ R +   +PNW L++T
Sbjct: 178 KNAAGEVIEGSPTAVKRQKDVWTYARRMGSDDPNWQLVAT 217


>gi|163797060|ref|ZP_02191015.1| hypothetical protein BAL199_11141 [alpha proteobacterium BAL199]
 gi|159177576|gb|EDP62129.1| hypothetical protein BAL199_11141 [alpha proteobacterium BAL199]
          Length = 222

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 115/220 (52%), Gaps = 4/220 (1%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           I+L A +  FV  +LR VLG++TG+E+  +  F+      + ++ G I     +  +++D
Sbjct: 6   IILLAMLAGFVIFKLRSVLGRRTGHERRPTDPFAES---PETNDNGNIVRLPDRSAESVD 62

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
             ++  P G+ +   +  I      FD + FL  A++++  IV++F +G V  +  L+  
Sbjct: 63  GSDDDVP-GSSMAAGIMQIKLADDGFDERQFLQGAKSAFAMIVEAFAKGDVDGLRPLLSR 121

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            +Y  F  ++   +   +  ++++V I    ++ AS+E +   +T+  V + +  +   D
Sbjct: 122 ELYGGFASAIEACEKAGEIQETTIVTIRSADVVEASLENSVAKVTVEFVTEQVKVTRSSD 181

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
             +I  DP+    + DIWTF R+I   +PNW L++T++ E
Sbjct: 182 GEVIDGDPDRIDILTDIWTFARDIGNRDPNWELVATRVPE 221


>gi|83942018|ref|ZP_00954480.1| transporter, Tim44 family protein [Sulfitobacter sp. EE-36]
 gi|83953067|ref|ZP_00961789.1| transporter, Tim44 family protein [Sulfitobacter sp. NAS-14.1]
 gi|83842035|gb|EAP81203.1| transporter, Tim44 family protein [Sulfitobacter sp. NAS-14.1]
 gi|83847838|gb|EAP85713.1| transporter, Tim44 family protein [Sulfitobacter sp. EE-36]
          Length = 219

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 22/231 (9%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG------I 59
           M+S    +L+ A I  F+ L+L+ VLG +TG EKP           S++ ER       +
Sbjct: 1   MNSPMIQLLVLAAIAVFLILRLKNVLGTRTGFEKPAE--------VSEKPERPSGPAFEV 52

Query: 60  ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
           I  G      +LD I +  P G+     + ++  V   F   DFL  AR +YE IV  + 
Sbjct: 53  IEGGP-----DLD-ITDHAPEGSDTALALAEMKRVEPSFGVSDFLGGARGAYEMIVMGYE 106

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYIT 177
            G +  I+  +   +Y+ F + ++ R+     V+S  +GI +M++ NA++++ T    +T
Sbjct: 107 HGNLDEIKPFLSEDIYESFVEGVAAREDQGLTVESHFIGIREMELENATMDKTTNEAELT 166

Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           IR V +  S   D+D  ++        +  D W F R +   +PNW+L+ST
Sbjct: 167 IRFVAELTSVVKDRDGEIVEGSTTEVNRQKDTWVFARVMGSDDPNWLLVST 217


>gi|126463660|ref|YP_001044774.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
           sphaeroides ATCC 17029]
 gi|332559713|ref|ZP_08414035.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
           sphaeroides WS8N]
 gi|126105324|gb|ABN78002.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
           sphaeroides ATCC 17029]
 gi|332277425|gb|EGJ22740.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
           sphaeroides WS8N]
          Length = 219

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 10/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M S    +L+ A I  F+ ++L+ VLG + G EKP       K     R  R    +  G
Sbjct: 1   MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPAVPLEDPK----PRTRRDFEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
             +D +D + +    G+   K +  +      F   +FL  AR +YE IV +F +G++  
Sbjct: 57  PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLTGARGAYEMIVMAFEKGELEQ 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQ 183
           I   +   V++ F +++  R++   +V+++ +G+ ++ I  AS + +T    + +R VG+
Sbjct: 113 IRPFLSPDVFESFEEAVKAREAEGLSVEATFLGLREIDIHEASFDRDTRVGQVAVRFVGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             S   D+   +I   P    +  D+WTF R +  ++PNW L++T
Sbjct: 173 LTSVVRDRTGQVIEGSPTEVKRQRDVWTFERRMGANDPNWQLVAT 217


>gi|126730112|ref|ZP_01745924.1| transporter, Tim44 family protein [Sagittula stellata E-37]
 gi|126709492|gb|EBA08546.1| transporter, Tim44 family protein [Sagittula stellata E-37]
          Length = 219

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 10/218 (4%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           +L+ A I  F+ L+LR VLG + G E+P     S K   S+R+      +  G   D  D
Sbjct: 8   LLVLAGIAVFLVLRLRSVLGTRDGFERPTPAEKS-KETTSRRE---FEVIEGGPDHDITD 63

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
            + E    GT     +  +  V   F   +FL  AR +YE I+  F  G +  ++  +  
Sbjct: 64  HVAE----GTDAANALAAMKRVEPSFSVSEFLGGARGAYEMILMGFERGDIEGLKPFLAD 119

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISASYD 190
            V++ F++ +  R+S    + +  VG+ +M +  AS + +T    IT+R VG+  S   +
Sbjct: 120 DVFETFSEVVEARESEGLTIDADFVGVREMTLAGASFDPDTREAEITVRYVGELTSVVKN 179

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            +  ++   P    +  DIWT+ R +   +PNW L++T
Sbjct: 180 AEGEIVEGSPTAVKRQKDIWTYARTMGADDPNWQLVAT 217


>gi|209966267|ref|YP_002299182.1| hypothetical protein RC1_3002 [Rhodospirillum centenum SW]
 gi|209959733|gb|ACJ00370.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 230

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 108/224 (48%), Gaps = 6/224 (2%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEK----PFSGFFSGKYVFSKRDERGIITLGKGK 66
           F IL+F  +  F+  +LR VLG++ G E+    PF+         +  +   ++ L    
Sbjct: 8   FDILIFGMVAAFLVYRLRSVLGRRHGEERQRPNPFTPPPKAGQAPAPAESDNVVPLPDRG 67

Query: 67  KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
           +        E  PI   L + +R I +    F+ K FL  A+ ++E IV +F +G    +
Sbjct: 68  RPPEAPLPVETGPIS--LEEGLRQIRAADPTFNEKHFLQGAKAAFEMIVKAFADGDTPTL 125

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
             L+   VY  F +++  R++  +  ++ +   + + +  A ++     +TIR +   + 
Sbjct: 126 RPLLADDVYDGFAEAIRKRQAAGETRETRITAFESVDLKEARMDGRHAMVTIRFITHQVD 185

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            + +    ++  DP+   +V+DIWTF RN    +PNW+L+ T++
Sbjct: 186 CTVNAAGDVVDGDPDEAIEVVDIWTFSRNTRSPDPNWLLVETRV 229


>gi|89067415|ref|ZP_01154928.1| transporter, Tim44 family protein [Oceanicola granulosus HTCC2516]
 gi|89046984|gb|EAR53038.1| transporter, Tim44 family protein [Oceanicola granulosus HTCC2516]
          Length = 220

 Score = 98.2 bits (243), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 9/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+LR VLG + G EKP     S +    +R +  +I    G
Sbjct: 1   MNSPIIQLLVLAGIAVFLILRLRSVLGTREGFEKP-PVTESDRSALRRRPDLEVIE--GG 57

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
             +D +D ++     G+     +  +      F   DFL  AR +YE I+ +F  G +  
Sbjct: 58  PDRDIVDHVD----AGSDAADALARMKRAEPAFGVGDFLGGARGAYEMILMAFENGDLSE 113

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           ++  +   VY+ F+  +  R+    +V+++ VG+ ++ + +A  +E T    +T+R  G+
Sbjct: 114 VKDFLGPEVYEAFSQVIEERRERGLHVEATFVGLSEITLKDAEFDETTREAELTVRFTGE 173

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             S   D    ++   P    +  D+WTF R +  ++PNW+L++T
Sbjct: 174 ITSVVRDAGGDIVEGSPTEIKRQRDVWTFARTMGANDPNWILVAT 218


>gi|84501205|ref|ZP_00999410.1| transporter, Tim44 family protein [Oceanicola batsensis HTCC2597]
 gi|84390496|gb|EAQ02984.1| transporter, Tim44 family protein [Oceanicola batsensis HTCC2597]
          Length = 220

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 115/227 (50%), Gaps = 13/227 (5%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEK-PFSGFFSGKYVFSKRDERG-IITLG 63
           M+S    +L+ A I  F+ L+LR VLG + G EK P +   SG    S  + RG    + 
Sbjct: 1   MNSPIIQLLVLAGIAVFLILRLRSVLGTREGFEKTPVT--RSGP---SNSEARGNFEVIE 55

Query: 64  KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
            G   D +D + E  P    L ++ +    +   F   +FL  AR +YE I+  F  G++
Sbjct: 56  GGPDPDIVDHVPEDSPAAGALARMKQ----LEPSFSVGEFLGGARGAYEMILMGFERGEM 111

Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIV 181
             I+  +   VY+ F   ++ R +    +++  VG+ ++++++A +++ +    +T+R V
Sbjct: 112 AEIKPFLSEEVYESFAHVVNERDAKGLTIEADFVGVKELQLVDAELDDTSREGELTVRFV 171

Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           GQ   A  D+   +I  DP+      D+WTF R +   +PNW L++T
Sbjct: 172 GQLTFAVRDRAGEVIEGDPKSIKTQRDVWTFARKMGSDDPNWQLVAT 218


>gi|221640736|ref|YP_002526998.1| Import inner membrane translocase subunit Tim44 [Rhodobacter
           sphaeroides KD131]
 gi|221161517|gb|ACM02497.1| Import inner membrane translocase, subunit Tim44 precursor
           [Rhodobacter sphaeroides KD131]
          Length = 219

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 10/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M S    +L+ A I  F+ ++L+ VLG + G EKP       K     R  R    +  G
Sbjct: 1   MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPAVPLEDPK----PRTRRDFEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
             +D +D + +    G+   K +  +      F   +FL  AR +YE IV +F +G++  
Sbjct: 57  PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLIGARGAYEMIVMAFEKGELEQ 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQ 183
           I   +   V++ F +++  R++   +V+++ +G+ ++ I  AS + +T    + +R VG+
Sbjct: 113 IRPFLSPDVFESFEEAVKAREAEGLSVEATFLGLREIDIHEASFDRDTRVGQVAVRFVGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             S   D+   +I   P    +  D+WTF R +  ++PNW L++T
Sbjct: 173 LTSVVRDRTGQVIEGSPTEVKRQRDVWTFERRMGANDPNWQLVAT 217


>gi|154251701|ref|YP_001412525.1| import inner membrane translocase subunit Tim44 [Parvibaculum
           lavamentivorans DS-1]
 gi|154155651|gb|ABS62868.1| import inner membrane translocase subunit Tim44 [Parvibaculum
           lavamentivorans DS-1]
          Length = 247

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 109/228 (47%), Gaps = 25/228 (10%)

Query: 23  VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN---------LDS 73
           VFL+LR VLG++TG+E+P    +S +      D+  ++TL K  + D          +D+
Sbjct: 19  VFLKLRSVLGRRTGHERPPYDPYS-ENPAPGNDK--VVTLPKRGRTDAPASGARDRVIDA 75

Query: 74  INELFP-------------IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
             + F               G+ L   +  I      FD + FL+ AR +YE IV +F  
Sbjct: 76  AGDPFANAGARFRWRGVTEEGSPLAGALDAIADADRTFDTESFLSGARMAYEMIVTAFAA 135

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
           G    ++ L+   VY  F  ++S R+     +  S +GID   I   S++     +T+  
Sbjct: 136 GDRATLKPLLSDDVYASFEGAISAREKAGLQIDQSFIGIDKAAITGGSLDGTRARLTVSF 195

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             +  S++ + D +++  DP    ++ D+WTF R++   +PNW L++T
Sbjct: 196 RSELTSSTKNSDGVVVEGDPVTVREITDVWTFERDLRNRDPNWKLVAT 243


>gi|332186336|ref|ZP_08388081.1| tim44-like domain protein [Sphingomonas sp. S17]
 gi|332013704|gb|EGI55764.1| tim44-like domain protein [Sphingomonas sp. S17]
          Length = 257

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 108/219 (49%), Gaps = 9/219 (4%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEK-PFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
           F ++L A +  F+ L+L  VLGK+TG+E+ P           S  D    + L +  +  
Sbjct: 44  FYVVLLAMVALFLALRLYSVLGKRTGHEQQPLP--------RSADDRARPVVLPRAAEPA 95

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
              +      I  R  + +R I++    FD   FL  A+++Y   +++F++G   A+ +L
Sbjct: 96  QSPAPVANRNIDPRAEQGLRAIIAGEPGFDVNQFLGGAQSAYRMTLEAFWKGDEQALAEL 155

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           VD+ V   F ++++ R+   + + + L+ +D  KI+++ +      IT+R     ++ + 
Sbjct: 156 VDTDVLGAFAEAIAQRQEAGETLDNRLIRVDSAKIVDSQLAGRDARITVRFDADIVAVTR 215

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           D +  +I+       +  DIWTF R +   +PNW L+ T
Sbjct: 216 DAEGQVIAGSLSDAVETHDIWTFARTLKSGDPNWKLVDT 254


>gi|85705737|ref|ZP_01036834.1| transporter, Tim44 family protein [Roseovarius sp. 217]
 gi|85669727|gb|EAQ24591.1| transporter, Tim44 family protein [Roseovarius sp. 217]
          Length = 219

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 111/225 (49%), Gaps = 10/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG + G E P     + +   S+R E  +I    G
Sbjct: 1   MNSPILQLLVLAGIAIFLILRLKSVLGTRDGFEGPARNAPTPET--SRRREFEVIE--GG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D +D +    P  +     + D+  +  DF    FL  AR +YE I+ +F  GK+  
Sbjct: 57  PDHDIVDHV----PEDSEAAGALADMKRIEPDFSVTTFLQGARGAYEMILMAFERGKLDE 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           I   +D  VY+ F   + +R+    ++++  +G+ ++ + +A  +  T    IT+R VG+
Sbjct: 113 ITPFLDREVYETFAQVVDSREQQGLSIEAEFIGVRELSLFDAKFDAATRRAEITVRYVGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            +S   D +  ++   P    +  DIWT+ R +   +PNW L++T
Sbjct: 173 LVSVVRDSNGEIVEGAPGQSKRQKDIWTYERIMGSDDPNWRLVAT 217


>gi|126738514|ref|ZP_01754219.1| transporter, Tim44 family protein [Roseobacter sp. SK209-2-6]
 gi|126720313|gb|EBA17019.1| transporter, Tim44 family protein [Roseobacter sp. SK209-2-6]
          Length = 241

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 108/226 (47%), Gaps = 13/226 (5%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER-GIITLGK 64
           M+S    +L+ A I  F+ L+L+ VLG + G EKP            KR  R  +  +  
Sbjct: 24  MESPLIQLLVLAGIAVFLILRLKSVLGTREGFEKPPVS------AAEKRQGRPDLEVIEG 77

Query: 65  GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
           G  +D  D + E  P       + R        F   +F+  AR +YE I+  F  G++ 
Sbjct: 78  GPDRDITDHVEEESPAAQAFASMKR----AEPSFSVSEFVQGARGAYEMILMGFENGELD 133

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVG 182
           A++  +   VY  F ++++ R+     +++  +G+ +  ++ A  ++  NT  +T+R VG
Sbjct: 134 ALKGFLAEDVYDSFVEAVADREDKGLTIEAEFIGVRETAVVGAHFDDANNTAEVTMRFVG 193

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           +  S   D+D  ++  D +   +  D W F R++   +PNW L++T
Sbjct: 194 ELTSVVRDRDGEIVEGDAKAVKRQKDTWVFARSMGTDDPNWQLVAT 239


>gi|254486605|ref|ZP_05099810.1| transporter, Tim44 family [Roseobacter sp. GAI101]
 gi|214043474|gb|EEB84112.1| transporter, Tim44 family [Roseobacter sp. GAI101]
          Length = 219

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 110/225 (48%), Gaps = 10/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG + G EK          + +K  +         
Sbjct: 1   MNSPMIQLLVLAGIAVFLILRLKNVLGTREGFEKK-------PEIDAKPQKPSGPAFEVI 53

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
           +   +LD I +  P G+     + ++  V   F   DFL  AR +YE IV  F  G +  
Sbjct: 54  EGGPDLD-ITDHAPEGSDTALALAEMKRVEPSFGVSDFLGGARGAYEMIVMGFEHGNLDD 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           I+  +   ++  F D ++ R+     V+S+ +GI +M++ NA++++ T    +TIR V +
Sbjct: 113 IKPFLSEDIFDSFVDGIAAREDQGLTVESTFIGIREMELENATMDKATKEAELTIRFVAE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             S   DKD ++I   P    +  D W F R +   +PNW+L+ST
Sbjct: 173 MTSVVKDKDGMVIEGSPTEVKRQKDTWVFARVMGSDDPNWLLVST 217


>gi|83594937|ref|YP_428689.1| hypothetical protein Rru_A3608 [Rhodospirillum rubrum ATCC 11170]
 gi|83577851|gb|ABC24402.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
          Length = 219

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 115/233 (49%), Gaps = 37/233 (15%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEK----PFSGF---------FSGKYVFSKRDERGI 59
           I+ FA I  F+ L+LR VLG++TG E+    PF+            SG+   + R   G 
Sbjct: 10  IIFFAMIAAFLVLRLRSVLGRRTGEEQRRPDPFAQPESAQDNVIDLSGRKAVAGRPGDGT 69

Query: 60  ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
           +  G                        +  I      F P+ FL  A+ ++E I+ ++ 
Sbjct: 70  LAGG------------------------LTQIQLTDPSFSPEGFLIGAKAAFEMILMAYA 105

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +G    ++ L+   V+Q+F+ ++  R+  ++ +++ LVG   ++I+ A ++     +T++
Sbjct: 106 KGDKAVLKPLLAGEVFQNFSRAIDEREQADETMETDLVGFKSVEILRAGMDGQDALVTVK 165

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            V + +++  DK + ++  +P    +V DIWTF R+   ++PNW LI+T++ E
Sbjct: 166 FVTEQVNSVRDKSDTVVDGNPNQVEEVTDIWTFRRDTVSNDPNWDLIATQVPE 218


>gi|163745120|ref|ZP_02152480.1| hypothetical protein OIHEL45_06015 [Oceanibulbus indolifex HEL-45]
 gi|161381938|gb|EDQ06347.1| hypothetical protein OIHEL45_06015 [Oceanibulbus indolifex HEL-45]
          Length = 219

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 109/225 (48%), Gaps = 10/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG + G EKP           S R       +  G
Sbjct: 1   MNSPLIQLLVLAGIAVFLILRLKNVLGTREGFEKPPVS----DQTPSARSGPSFEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D  D + E    G  L ++ R    V   F   DFL  AR +YE IV  +  G +  
Sbjct: 57  PDLDITDHVPEDSTSGKALAEMKR----VEPSFGVNDFLQGARGAYEMIVMGYERGDLAE 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           I+  +   VY+ F D ++ R+     ++++ +G+ ++++I+A ++E T    +TIR VG+
Sbjct: 113 IQPFLAEDVYESFVDGVAAREDQGLTIEANFIGVRELELIDARMDEATKEAELTIRFVGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             SA  +++  ++        +  D W F R +   +PNW+L+ST
Sbjct: 173 LTSAVRNREGEIVEGSINEIKRQKDTWVFARVMGSDDPNWLLVST 217


>gi|103487499|ref|YP_617060.1| import inner membrane translocase, subunit Tim44 [Sphingopyxis
           alaskensis RB2256]
 gi|98977576|gb|ABF53727.1| import inner membrane translocase, subunit Tim44 [Sphingopyxis
           alaskensis RB2256]
          Length = 221

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 107/220 (48%), Gaps = 13/220 (5%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI---ITLGKGKK 67
           F I+L A I  F+ ++L  VLGK+TG+E+        + V  +RD+R     I L  G+ 
Sbjct: 4   FSIVLLAMIAAFLGMRLYSVLGKRTGHEQ--------EPVLPRRDDRSAPAPIRLDDGET 55

Query: 68  KDNLDSINELFPI--GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              + S  +   +         +R +++   +FD   F+  AR +Y  I+++F++G    
Sbjct: 56  SAIVTSATDTAGLVYEPSAEAGLRQLLANDRNFDAGRFMEGARAAYRMILEAFWKGDRET 115

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           +  L D   Y  F +++  R++  + +++ L+ ID  KI  A +      IT+R      
Sbjct: 116 LRDLCDDDSYDAFVEAIDAREARGETLENRLIRIDSAKITAAELNRGEARITVRYHADIS 175

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
           + + D D  LI+       +  D+WTF R I  ++PNW+L
Sbjct: 176 AITRDADGKLIAGSMSDAAQTDDLWTFRRQIGSNDPNWLL 215


>gi|296283090|ref|ZP_06861088.1| hypothetical protein CbatJ_05690 [Citromicrobium bathyomarinum
           JL354]
          Length = 220

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 111/227 (48%), Gaps = 15/227 (6%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEK-PFSGFFSGKYVFSKRDERGI-----ITLGK 64
           + I++ A I  F+ L+L  VLG++  +E+ P    F  K      D+ G+      T   
Sbjct: 3   YEIVILAMIAVFLGLRLYSVLGRRAEHEEEPVPHRFDAK------DKAGLAAAPQTTQAP 56

Query: 65  GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
            +     ++  ++ P+   + + ++ I++    FD   FL  A+ +Y  I++++++G   
Sbjct: 57  PRAVTEQEAKPDVLPV---VERGVQSIIAADRGFDITSFLEGAKGAYGMILEAYWKGDKE 113

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
            +  L D  VYQ F  ++  R+   + + + L+ I+D  I +A +E     IT+R V   
Sbjct: 114 TLRDLCDESVYQGFAQAIDAREEAGETLDNRLIRIEDATIRDAELERKEARITVRFVADI 173

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
            + ++D+D  +++   +   +  DIWTF R +    P+W L+ T  G
Sbjct: 174 AAVTHDRDGNMVAGSLDDAIESRDIWTFARRVDSRTPDWQLVETDEG 220


>gi|254460692|ref|ZP_05074108.1| import inner membrane translocase, subunit Tim44 [Rhodobacterales
           bacterium HTCC2083]
 gi|206677281|gb|EDZ41768.1| import inner membrane translocase, subunit Tim44 [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 217

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 14/226 (6%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG + G E+P +   SG+    KR E  +I  G  
Sbjct: 1   MNSPIIQLLVLAGIAVFLILRLKNVLGTREGFEQPPAQVPSGR----KRPEFEVIEGGPD 56

Query: 66  KK-KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
               D+ D + E         + +  + +    F   DFL  AR +YE I+  F  G++ 
Sbjct: 57  PDIADHTDGMPEA-------AEALAKMKAAEPSFGVSDFLGGARGAYEMILIGFERGEMA 109

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI-EENTV-YITIRIVG 182
            I+  +D  VY  F + +  R      V++  VGI +M + +A+  +EN +  ++++ +G
Sbjct: 110 DIKPFLDDDVYASFAEVVEMRAKQGLTVEAEFVGIREMSLADATFDDENGIGEVSVKFIG 169

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           +  S   D    ++  D +   +  DIWTF R +   +PNW L++T
Sbjct: 170 EMTSVVRDNAGEIVEGDAKKVKRQKDIWTFARKMGSDDPNWQLVAT 215


>gi|254463881|ref|ZP_05077292.1| transporter, Tim44 family [Rhodobacterales bacterium Y4I]
 gi|206684789|gb|EDZ45271.1| transporter, Tim44 family [Rhodobacterales bacterium Y4I]
          Length = 214

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 106/222 (47%), Gaps = 19/222 (8%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG----IITLGKGKKK 68
           +L+ A I  F+ L+LR VLG + G EKP            + + RG    +  +  G  +
Sbjct: 4   LLVLAGIAVFLILRLRSVLGTREGFEKP---------PLPQSEARGRRPDLEVIEGGPDR 54

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
           D  D + E    G++  + +  +      F  ++F+  AR +YE I+  F  G +  I+ 
Sbjct: 55  DITDYVAE----GSKQAQALAAMKRAEPSFQVQEFVQGARGAYEMILMGFEHGNLDDIQP 110

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFIS 186
            +   V+  F D+++ R+     +++  +G+ +  + +A  +  T    IT+R VG+  S
Sbjct: 111 FLAEDVFDSFVDAVAQREDKGYKIEADFIGVRETTLQDAQFDPQTGRAEITMRFVGELTS 170

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
              D+   ++  DP+   +  D W F RN+   +PNW L++T
Sbjct: 171 VVRDRGGDIVEGDPKAIKRQKDTWIFARNMGSDDPNWQLVAT 212


>gi|149912880|ref|ZP_01901414.1| transporter, Tim44 family protein [Roseobacter sp. AzwK-3b]
 gi|149813286|gb|EDM73112.1| transporter, Tim44 family protein [Roseobacter sp. AzwK-3b]
          Length = 219

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 112/224 (50%), Gaps = 8/224 (3%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG + G E P     +G     +RD   +I    G
Sbjct: 1   MNSPLLQLLVLAGIAIFLILRLKSVLGTRDGFEGPPRSERAGATP-QRRDTFEVIE--GG 57

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D +D++++       L ++ R    +   F+   FL  AR +YE I+ +F  G++  
Sbjct: 58  PDYDIIDNVSDGSDAADALARMKR----IEPSFNVTQFLQGARGAYEMILMAFERGQLED 113

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI-EENTVYITIRIVGQF 184
           +   +D  VY+ F   +  R+     V++  +G+ + K+  A++ ++N   IT+R VG+ 
Sbjct: 114 VAPFLDEDVYEAFAQVIDARQEQGLIVEAEFLGLRETKLAEATLSDDNRAAITVRFVGEL 173

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            S   D +  ++  D +   +  DIWTF R +   +PNW L++T
Sbjct: 174 TSIVRDANGEIVEGDAKTAKRQKDIWTFERVMGSDDPNWRLVAT 217


>gi|255263169|ref|ZP_05342511.1| transporter, Tim44 family [Thalassiobium sp. R2A62]
 gi|255105504|gb|EET48178.1| transporter, Tim44 family [Thalassiobium sp. R2A62]
          Length = 219

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 104/225 (46%), Gaps = 10/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+LR VLG + G EKP +   S       R       +  G
Sbjct: 1   MNSPIIQLLVLAGIAIFLILRLRNVLGTREGFEKPPAQQSSAP----DRALSDFEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D  D +    P G      +  +  V   F+  +FL  AR +YE I+ +F  G++  
Sbjct: 57  PDHDITDHV----PEGGDAYNALLGMKKVDPSFNVGEFLGGARGAYEMILMAFERGEIEE 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           I+  + S VY+ F   +  RK+    ++++ VGI DM +  A   E T    I +R VG+
Sbjct: 113 IKPFLSSDVYEAFATVVDDRKAKGVTIEANFVGISDMALNAADFNETTGEAEIAVRFVGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             S   DK   +I        +  D WTF R++   +PNW L++T
Sbjct: 173 MTSIVRDKGGDVIEGSETTVKRQKDTWTFARDMDADDPNWDLVAT 217


>gi|94498195|ref|ZP_01304756.1| import inner membrane translocase, subunit Tim44 [Sphingomonas sp.
           SKA58]
 gi|94422325|gb|EAT07365.1| import inner membrane translocase, subunit Tim44 [Sphingomonas sp.
           SKA58]
          Length = 217

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 109/222 (49%), Gaps = 13/222 (5%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK-- 68
           ++I++ A I  F+ L+L  VLGK+TG+E+  +       +    D   +  L  G     
Sbjct: 2   YVIVILAMIAGFLALRLYSVLGKRTGHEQEPA-------LRPAEDRAKVTVLQPGPTNHG 54

Query: 69  --DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
             D +     L   G      +R +++   +FD   F+  AR++Y+ ++++F+ G    +
Sbjct: 55  GGDTVRLAEGLIAPGAETG--VRTLIATDRNFDVPQFVEGARSAYKMVLEAFWRGDREEL 112

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
             L D+ V   F D+++ R+++   + + LV I+  +II A++ + T  I +R      +
Sbjct: 113 AWLCDADVLASFEDAIAAREADGHVLDNRLVRIEKAQIIEATVRDGTAEIAMRFEADIAA 172

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            + D+D  +I+          DIWTF R+I  ++PNW L  T
Sbjct: 173 VTRDRDGNVIAGSMTDAIDTKDIWTFTRDIRSADPNWKLSET 214


>gi|288959728|ref|YP_003450069.1| mitochondrial import inner membrane translocase [Azospirillum sp.
           B510]
 gi|288912036|dbj|BAI73525.1| mitochondrial import inner membrane translocase [Azospirillum sp.
           B510]
          Length = 231

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 110/224 (49%), Gaps = 12/224 (5%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRD------ERGIITLGKGK 66
           I++FA I  F+  +LR VLG++TG E+     FS     +K D      +R         
Sbjct: 10  IVIFAMIAAFLVYRLRSVLGRRTGEERQRPNPFSAAPGAAKPDNVVSLPQRNQPRPDAAP 69

Query: 67  KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
            +D + S +E   +   +++    I +    FD K FL+ A+ ++  IVD+F  G    +
Sbjct: 70  GQDVMAS-DEPLSLAASIDQ----IRAADPTFDEKHFLDGAKAAFAMIVDAFARGDTATL 124

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE-NTVYITIRIVGQFI 185
             L+   VY  F   +  R++  +  ++ +  + + +++ A ++   T  +T+R+V   +
Sbjct: 125 RPLLADDVYDGFARVIRDRQAAGEQHETRIEQVREAEVVEAKLDAGRTARVTVRLVSDQV 184

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           +   D++  ++  DP+   +  D+WTF R++   +PNW L+  +
Sbjct: 185 NVVRDRNGAVVDGDPKALVENTDVWTFARDLRSRDPNWALVEVR 228


>gi|85709415|ref|ZP_01040480.1| hypothetical protein NAP1_11058 [Erythrobacter sp. NAP1]
 gi|85688125|gb|EAQ28129.1| hypothetical protein NAP1_11058 [Erythrobacter sp. NAP1]
          Length = 219

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 110/219 (50%), Gaps = 4/219 (1%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           I++ A I  F+ L+L  VLG++  +E+        ++    + +      G+  +     
Sbjct: 5   IVILAMIAAFLGLRLYSVLGRRAEHEEES---VPQRFDAGDKPQAQPPIAGQPAQPAPQR 61

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
           SI EL  +   + + +R+I S    FD   F++ A+ +YE +++ F+EG    + +L D 
Sbjct: 62  SI-ELEGVMPAVERGVREIASADRSFDIGQFMDGAKGAYEMVLEGFWEGDKDTLRELCDD 120

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            VY  F+ ++  R+     + + L+ I++ +I +AS++     I +  V    + + DKD
Sbjct: 121 DVYAGFSAAIDAREEAGHTLDNKLIRIEETRIHSASMDGRMARIAVLFVADIAAVTRDKD 180

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
            ++++   +   +  D+WTF RNI   +PNWVL  T  G
Sbjct: 181 GVVVAGSLDDAIESRDVWTFSRNIGSRDPNWVLDETDEG 219


>gi|304320483|ref|YP_003854126.1| hypothetical protein PB2503_04547 [Parvularcula bermudensis
           HTCC2503]
 gi|303299385|gb|ADM08984.1| hypothetical protein PB2503_04547 [Parvularcula bermudensis
           HTCC2503]
          Length = 222

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 112/222 (50%), Gaps = 11/222 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
           D +++ F  I  F+  +L  +LG K G+E P         + + R ER     G+G ++D
Sbjct: 3   DPVLIFFVVIAAFLSYRLYTLLGSKGGHE-PTDAERERIGLPTGRPERD----GQGTQED 57

Query: 70  N--LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
              +   ++  P+      V  D    Y DFDP +F+  A+ +YE I+++F  G++  + 
Sbjct: 58  EAVVAPRSDAKPLPAWAETVRAD----YADFDPDEFVTGAKAAYEMIIEAFANGRLDDVR 113

Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
             VD  V + F  ++  R + ++ ++ +LVGI+  +++ A  +   + +T++     I  
Sbjct: 114 AYVDPDVMRTFEIAVRGRDNAQQTMEVTLVGIERAEVVEAKRQSAHLDVTVKFRSDQIRV 173

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           + + +  +I  DP     VID WTF R +  ++PNW L +T+
Sbjct: 174 TRNAEGDVIEGDPNRIDLVIDRWTFSRPLSSTDPNWTLTATE 215


>gi|254450565|ref|ZP_05064002.1| transporter, Tim44 family [Octadecabacter antarcticus 238]
 gi|198264971|gb|EDY89241.1| transporter, Tim44 family [Octadecabacter antarcticus 238]
          Length = 224

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 10/230 (4%)

Query: 1   MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60
           M    M+S    +L+ A I  F+ L+LR VLG + G EKP +       + ++R    + 
Sbjct: 1   MKETHMNSPVLQLLVLAGIAIFLILRLRNVLGTREGFEKPKAP----PAIPTRRFGPDLE 56

Query: 61  TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
            +  G   D  D ++      + + K +  + +    F+ ++FL  AR +YE I+  F +
Sbjct: 57  VIEGGPDPDVTDYVD----ADSDMAKALTAMKTADRSFNVREFLRGARGAYEMILTGFEK 112

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITI 178
           G +  I+  + S VY  F   + +R+ +  ++    +GI +  +++A  +E T    ITI
Sbjct: 113 GDLAEIKPFLSSDVYDAFAGVVESREKDGLSIDFKFIGISETTLVDAEFDETTKNAEITI 172

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           + + +  SA YD    L    P    K  D+WTF R +   +PNW L++T
Sbjct: 173 KFLNESTSAVYDNGGDLKEGSPTEIKKQRDVWTFGRTMGTGDPNWFLVAT 222


>gi|307294078|ref|ZP_07573922.1| import inner membrane translocase subunit Tim44 [Sphingobium
           chlorophenolicum L-1]
 gi|306880229|gb|EFN11446.1| import inner membrane translocase subunit Tim44 [Sphingobium
           chlorophenolicum L-1]
          Length = 218

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 116/224 (51%), Gaps = 17/224 (7%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK---- 66
           ++I++ A I  F+ L+L  VLGK+TG+E+        +      +ER  +T+ + +    
Sbjct: 2   YVIVILAMIAGFLALRLYSVLGKRTGHEQ--------EPALRPAEERAKVTIVQPRPVTE 53

Query: 67  -KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D++   + L   G      +R +++   +FD   F+  A+++Y  ++++F+ G    
Sbjct: 54  MAGDSVRLADGLIAPGGEAG--VRALIAADRNFDVPQFVEGAKSAYRMVLEAFWRGDRQE 111

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           +E L D+ V   F D+++ R++    + + LV I+ ++I++A +      I++R      
Sbjct: 112 LEWLCDADVLASFQDAITAREAEGHVLDNRLVRIEKVQIVDAGVTGRMAEISLRFEADIA 171

Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           + + D+D N++  S  +  G   DIWTF R++  ++PNW L  T
Sbjct: 172 AVTRDRDGNVVAGSLTDAVG-TNDIWTFTRDLRSTDPNWKLSET 214


>gi|254440619|ref|ZP_05054113.1| Tim44-like domain family [Octadecabacter antarcticus 307]
 gi|198256065|gb|EDY80379.1| Tim44-like domain family [Octadecabacter antarcticus 307]
          Length = 219

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 109/225 (48%), Gaps = 10/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+LR VLG + G EKP         + S+R    +  +  G
Sbjct: 1   MNSPVLQLLVLAGIAIFLILRLRNVLGTREGFEKPKVA----PAIPSRRPTPDLEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D  D ++      + + +V+  + +    F+ ++FL  AR +YE I+  F +G +  
Sbjct: 57  PDPDVTDYVD----ADSDVARVLTAMKTADRSFNVREFLRGARGAYEMILTGFEKGDIAE 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           I+  + S VY  F   +  R+ +  +V    +GI +  +++A  +E T    I+I+ + +
Sbjct: 113 IKPFLSSDVYDAFAGVVEAREKDGLSVDFKFIGISETTLVDAEFDETTKNAEISIKFLCE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             SA YDK   L         K  D+WTF R +   +PNW L++T
Sbjct: 173 STSAVYDKGGDLKEGSATDIKKQRDVWTFGRTMGTGDPNWFLVAT 217


>gi|296444992|ref|ZP_06886953.1| import inner membrane translocase subunit Tim44 [Methylosinus
           trichosporium OB3b]
 gi|296257413|gb|EFH04479.1| import inner membrane translocase subunit Tim44 [Methylosinus
           trichosporium OB3b]
          Length = 229

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 108/224 (48%), Gaps = 9/224 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII----TLGKG 65
           D  IL+ A +  FV  +L  VLG +T  E   +G      V S     G++    + G  
Sbjct: 8   DPSILVLAALAAFVVWKLWSVLGVRTDRENSAAG-----RVPSPGRRFGVVPPPASTGFA 62

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
               +    + L   G++    +  + +    FD K+FL  A+ +YE +V+SF +G    
Sbjct: 63  APPQDQSRWDGLAEPGSKGWAGLDALAAADRGFDAKNFLEGAKKAYELVVESFAKGDREM 122

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           +  L+ + VY  F  +++ R+   ++ ++ +V I+   + +A +E     + IR V + I
Sbjct: 123 LRNLLANDVYDSFAKAIAAREQRGESAEARVVAIETASVEDAQVERGRAQVAIRFVVKLI 182

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           SA  D    +I  D E    + D+WTF R+I   +PNW L++T+
Sbjct: 183 SARRDSAGEVIEGDVERPIDITDLWTFARDISSRDPNWKLVATE 226


>gi|56698697|ref|YP_169074.1| Tim44 family protein [Ruegeria pomeroyi DSS-3]
 gi|56680434|gb|AAV97100.1| transporter, Tim44 family [Ruegeria pomeroyi DSS-3]
          Length = 218

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 103/225 (45%), Gaps = 11/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG + G EKP             R  R    +  G
Sbjct: 1   MNSPLIQLLVLAGIAIFLILRLKSVLGTREGFEKP-----PVPQQPENRTRRDFEVIEGG 55

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
             +D  D + E  P    L  + R    +   F   +F+  AR +YE IV  F  G +  
Sbjct: 56  PDRDITDHVPEDSPQAQALAAMKR----IEPAFSVSEFVQGARGAYEMIVMGFERGNLDE 111

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183
           IE  +   V++ F   ++ R+     +++  +G+ +  I +   ++  N   IT+R VG+
Sbjct: 112 IEPFLTEEVFETFVGVVAAREDQGLTIEAEFIGVRETSIQDVHFDKDSNRGEITMRFVGE 171

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             S   D+   +I   P    +  D+WTF R +   +PNW+L++T
Sbjct: 172 LTSVVRDRGGDVIEGSPTAVKRQKDVWTFARVMGTDDPNWLLVAT 216


>gi|294675588|ref|YP_003576203.1| import inner membrane translocase subunit Tim44 [Rhodobacter
           capsulatus SB 1003]
 gi|294474408|gb|ADE83796.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
           capsulatus SB 1003]
          Length = 219

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 110/226 (48%), Gaps = 12/226 (5%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNE-KPFSGFFSGKYVFSKRDERGIITLGK 64
           M    F +++ A I  F+ L+L+ VLG + G E +P      G     + +      +  
Sbjct: 1   MSPALFQLIVLAAIAIFLILKLKSVLGTREGYEDEPMPVEAPGPRAADRFE-----VIEG 55

Query: 65  GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
           G   D +D +    P G+     +  +  V   F+   FL  ++ +YE I+ +F  G + 
Sbjct: 56  GPDHDIIDHV----PEGSDAAVALAQMKRVEPTFNVGAFLQGSKVAYEMILMAFERGDLS 111

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVG 182
           A+ + +   V + F  +++ R+     V++S +G+ ++ +  AS  E++    +T+R  G
Sbjct: 112 AVRRFLAPEVLEAFETAVADRQRQGLTVEASFLGLRELVLTEASFNESSREAEVTVRFGG 171

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           + IS + D +  ++  DP+   K  D WTF R +  S+PNW L++T
Sbjct: 172 ELISVARDANGQIVEGDPKAPRKQRDSWTFARVMGSSDPNWQLVAT 217


>gi|149204297|ref|ZP_01881264.1| transporter, Tim44 family protein [Roseovarius sp. TM1035]
 gi|149142182|gb|EDM30229.1| transporter, Tim44 family protein [Roseovarius sp. TM1035]
          Length = 219

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 10/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG + G    F G          R  R    +  G
Sbjct: 1   MNSPILQLLVLAGIAIFLILRLKSVLGTRDG----FEGPTRSAPAPETRRRREFEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D +D + E       L ++ R    +  DF    FL  AR +YE I+ +F  GK+  
Sbjct: 57  PDHDIVDHVPEDSDAAAALAEMKR----IEPDFSVTTFLQGARGAYEMILMAFERGKLDE 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           +   +D  VY+ F   +  R+     +++  +G+ ++ + +A  + +T    I++R VG+
Sbjct: 113 VTPFLDRDVYETFAQVVDAREQQGLTIEAEFIGVRELTLADARFDADTRRAEISVRYVGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            IS   D    ++   P    +  D+WT+ R +   +PNW L++T
Sbjct: 173 LISVVRDSTGEIVEGVPGQSKRQKDVWTYERVMGADDPNWRLVAT 217


>gi|86136747|ref|ZP_01055325.1| transporter, Tim44 family protein [Roseobacter sp. MED193]
 gi|85826071|gb|EAQ46268.1| transporter, Tim44 family protein [Roseobacter sp. MED193]
          Length = 218

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 114/227 (50%), Gaps = 15/227 (6%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG--IITLG 63
           M+S    +L+ A I  F+ L+LR VLG + G EKP           +++   G  +  + 
Sbjct: 1   MESPLISLLVLAGIAVFLILRLRSVLGTREGFEKP-------PVAPTQKRSNGPDLEVIE 53

Query: 64  KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
            G  +D  D + E    G+   K +  +  V   F   +F+  AR++YE I+  F +G++
Sbjct: 54  GGPDRDITDYVEE----GSDQAKALAAMKRVEPSFQVGEFVQGARSAYEMILMGFEKGEL 109

Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIV 181
             I+  +   V+  F ++++ R+     +++  +G+ +  +++A  +E T    +T+R +
Sbjct: 110 DDIQGFLAEDVFDSFVEAVAQREDQGLTIEAEFIGVRETAVVDAIFDETTGVAELTMRFI 169

Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           G+  S   +++  ++  D +   +  DIW F R++   +PNW L++T
Sbjct: 170 GEMTSVVRNREGEIVEGDAKAIKRQKDIWVFARSMGVDDPNWQLVAT 216


>gi|119385510|ref|YP_916566.1| import inner membrane translocase, subunit Tim44 [Paracoccus
           denitrificans PD1222]
 gi|119375277|gb|ABL70870.1| import inner membrane translocase, subunit Tim44 [Paracoccus
           denitrificans PD1222]
          Length = 218

 Score = 91.7 bits (226), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 10/218 (4%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           +L+ A I  F+ L+LRGVLG + G E P         +  +  +R    +  G  +    
Sbjct: 8   LLVLAAIAVFLILRLRGVLGTRDGFESP--------RIPEEPVQRRRFDVIDGTAEAGDS 59

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
            I +    G+   K + ++  +  DF    FL+ A+++YE I+ +F  G +  +   +  
Sbjct: 60  DITDHAEPGSPAAKALAEMKRIEPDFAVGPFLSGAKSAYEMILMAFERGDLSEVRGFLAP 119

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISASYD 190
            V + F   +  RK+     ++  +G  +  +  A     T    +++R VG+ I A+ D
Sbjct: 120 PVAEAFESVIEDRKARNLTTEAQFLGTRETALAGAEFTPATGMAELSVRFVGEMIVATRD 179

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            D  +I  DP+   K  D WTF R +   +PNW L++T
Sbjct: 180 ADGNVIEGDPKAARKQRDTWTFARRMGQDDPNWQLVAT 217


>gi|163738003|ref|ZP_02145419.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis BS107]
 gi|163742601|ref|ZP_02149987.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis 2.10]
 gi|161384186|gb|EDQ08569.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis 2.10]
 gi|161388619|gb|EDQ12972.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis BS107]
          Length = 218

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 110/225 (48%), Gaps = 11/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG + G EKP       +   ++R E  +I    G
Sbjct: 1   MESPVIQLLVLAGIAVFLILRLKSVLGTREGFEKPAVPQADRQ---NRRPELEVIE--GG 55

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D +D + E  P  + L  + +        F+ +DF+  AR +YE I+ +F  G++  
Sbjct: 56  PDHDIVDYVPEDSPQASDLAAMKK----AEPSFEVRDFVQGARGAYEMILMAFERGELDD 111

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           IE  +   V+  F  +++ R+     +++  +G+ +  + + S +  T    IT+R V +
Sbjct: 112 IEAFLAPDVFDSFVTAVAHREDQGLTIEAEFIGVRETTLTDTSFDPATGDAQITMRFVAE 171

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             S   D+   ++  DP+   +  D W F R +  ++PNW L++T
Sbjct: 172 LTSVVRDRGGDIVEGDPKAVKRQKDTWVFGRTMGSADPNWHLVAT 216


>gi|254455846|ref|ZP_05069275.1| import inner membrane translocase, subunit Tim44 [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207082848|gb|EDZ60274.1| import inner membrane translocase, subunit Tim44 [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 198

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 49/226 (21%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           I+L A I  F+FL+LRG+LGK+TG        F GK                        
Sbjct: 10  IILLAMIAGFIFLRLRGILGKRTG--------FEGK------------------------ 37

Query: 73  SINELFPIGTRLNKVMRDIVS--------VYTDFDPKDFLNEARNSYEAIVDSFFEG--K 122
                     + +K++++ V+         + +   K+F+  A+ +YE I+  F +   K
Sbjct: 38  -------AAPQFDKILKEAVAKQAPVNNETFDENAQKEFIKGAKIAYETIITDFSDNDNK 90

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
           +   + L++  +Y  FND+L  R       + + +GI+   I      +  + +T+  + 
Sbjct: 91  LTTSKPLLNKEIYDQFNDALKERSERGHYAEITFIGINSATIKEHKKIDKILNVTVDFIA 150

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           + I+   DKD  +IS DPE   K+ D W F R++   NPNW L++T
Sbjct: 151 EVITCIKDKDKKIISGDPEKIKKIYDTWVFSRDVTSPNPNWQLVNT 196


>gi|46204686|ref|ZP_00049618.2| COG4395: Uncharacterized protein conserved in bacteria
           [Magnetospirillum magnetotacticum MS-1]
          Length = 223

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 104/224 (46%), Gaps = 16/224 (7%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEK------------PFSGFFSGKYVFS- 52
            DS D   L+F  +  FV  +LR VLG+KTG E+            P +G   G  V   
Sbjct: 2   QDSFDVTTLIFLALAVFVIWRLRSVLGQKTGAERSPFRPVERNRTEPPAGRAEGDNVVRL 61

Query: 53  KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
              +R            +   I E    G+ + + +  +V V   FDP+ FL  A+ +YE
Sbjct: 62  PGADRAQAAAAVQTVTRDWRGIAEP---GSAVARGLEQVVQVEPGFDPRTFLEGAKGAYE 118

Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
            IV +F +G    +  L+   VY  F+  +S R+   + V+++ + ID  +I+   ++  
Sbjct: 119 IIVTAFAQGDRKTLRPLLSREVYDGFDRVISERERRRETVETTFISIDKAEIVAIEVKNR 178

Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
              IT+R +   I+A+ D D  +I  + E   +V D+WTF R +
Sbjct: 179 AAQITVRFLSNLITATRDADGKVIDGNAETGVEVPDVWTFARTL 222


>gi|300024770|ref|YP_003757381.1| import inner membrane translocase subunit Tim44 [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526591|gb|ADJ25060.1| import inner membrane translocase subunit Tim44 [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 251

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 78/137 (56%), Gaps = 4/137 (2%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
           +FDP+ F+  A  +YE IV +F EG    ++ L+   V+  F+ +++ R++  + +    
Sbjct: 112 EFDPESFVTGAGRAYEMIVSAFAEGNRRMLKDLLSKDVFDGFSSAIADREARGEVLDQQF 171

Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
           VGI    I++A ++  T  +T+R + + ISA+ DK   +I+ D +    V DIW F R++
Sbjct: 172 VGIKKADIVDAEVKNGTAALTVRFISELISATRDKAGEVIAGDAQKIKDVTDIWIFSRDV 231

Query: 217 PP----SNPNWVLISTK 229
                 SNPNW L++T+
Sbjct: 232 SSAKALSNPNWRLVATQ 248


>gi|91762532|ref|ZP_01264497.1| Putative translocase transmembrane protein with Tim44 Pfam domain
           [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718334|gb|EAS84984.1| Putative translocase transmembrane protein with Tim44 Pfam domain
           [Candidatus Pelagibacter ubique HTCC1002]
          Length = 197

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 106/220 (48%), Gaps = 38/220 (17%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKY--VFSKRDERGIITLGKGKKKDN 70
           I+L A I  F+FL+LRG+LGKKTG        F GK    F K  ++  IT         
Sbjct: 10  IILLAMIAGFIFLRLRGILGKKTG--------FEGKIPPQFEKEFQKTNITPK------- 54

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG--KVHAIEK 128
                   P+    ++V +           K+FL  A+ +YE I+  F +   K+ A + 
Sbjct: 55  --------PVSENFDEVSQ-----------KEFLKGAKIAYETIITDFSDSDNKLIASKP 95

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
           L++ ++Y  F ++L  R +     + + +GI    I      E+++ +T+  V + I+  
Sbjct: 96  LLNKKIYDQFKEALEDRANKGHFAEITFIGIKSAVIKTHKKIEDSLEVTVDFVSEIITCI 155

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            DKD  ++S D +    V D W F ++I  SNPNW+LI+T
Sbjct: 156 KDKDKNIVSGDSDKIKTVYDTWVFSKDIKSSNPNWLLINT 195


>gi|85374926|ref|YP_458988.1| hypothetical protein ELI_10495 [Erythrobacter litoralis HTCC2594]
 gi|84788009|gb|ABC64191.1| hypothetical protein ELI_10495 [Erythrobacter litoralis HTCC2594]
          Length = 215

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 107/224 (47%), Gaps = 14/224 (6%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           F I++ A I  F+ ++L  VLG++   E+          V   R + G        K   
Sbjct: 3   FEIVILAMIAAFLGMRLYSVLGQRAEQEEE---------VIPNRYDAGDQPQQAAPKPAT 53

Query: 71  LDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
              + EL P   +   + + +R I +    FD   FL  A+ +Y  +++++++G    + 
Sbjct: 54  --QVVELQPNPNLHPSVEQGVRAIAAADRGFDVSSFLEGAKGAYGMVLEAYWKGDKETLR 111

Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
           +L D  VY  F  ++  R+   + + ++L+ I+D  I +A ++  T  +T+R V    + 
Sbjct: 112 ELCDDDVYASFAGAIDAREEAGEALDNTLIRIEDAVIRDAEMDGRTARVTVRFVADIAAV 171

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           + DKD  +I+   +   +  DIWTF RN+  + P+WVL  T  G
Sbjct: 172 TRDKDGNVIAGSLDDAIESRDIWTFSRNVDAAGPDWVLDETDEG 215


>gi|254476055|ref|ZP_05089441.1| transporter, Tim44 family [Ruegeria sp. R11]
 gi|214030298|gb|EEB71133.1| transporter, Tim44 family [Ruegeria sp. R11]
          Length = 214

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 105/218 (48%), Gaps = 11/218 (5%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           +L+ A I  F+ L+L+ VLG + G EKP +         SKR E  +I  G  +      
Sbjct: 4   LLVLAGIAVFLILRLKSVLGTREGFEKPIAPPAERP---SKRPEFEVIEGGPDQ------ 54

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
            I +  P G+   + +  +  V   F  +DF+  AR +YE I+ +F  G++  I+  +  
Sbjct: 55  DITDYVPEGSAQAEDLAAMKKVEPSFQVRDFVQGARGAYEMILMAFERGELDDIQPYLAP 114

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISASYD 190
            V+  F  +++ R+     +++  +G+ +  + + S +  T    IT+R V +  S   +
Sbjct: 115 DVFDSFVTAVAHREDQGLTIEADFIGVRETTLTDTSYDSVTGEAQITMRFVAEMTSVVRN 174

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
               ++  DP+   +  D W F R +  S+PNW L++T
Sbjct: 175 SAGEIVEGDPKAIKRQKDTWVFGRTMGSSDPNWFLVAT 212


>gi|71083043|ref|YP_265762.1| translocase [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062156|gb|AAZ21159.1| Putative translocase transmembrane protein with Tim44 Pfam domain
           [Candidatus Pelagibacter ubique HTCC1062]
          Length = 197

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 38/220 (17%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKY--VFSKRDERGIITLGKGKKKDN 70
           I+L A I  F+FL+LRG+LGKKTG        F GK    F K  ++  IT         
Sbjct: 10  IILLAMIAGFIFLRLRGILGKKTG--------FEGKIPPQFEKEFQKTNITPK------- 54

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG--KVHAIEK 128
                   P+    ++V +           K+FL  A+ +YE I+  F +   K+ A + 
Sbjct: 55  --------PVSENFDEVSQ-----------KEFLKGAKIAYETIITDFSDSDNKLIASKP 95

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
           L+  ++Y  F ++L  R +     + + +GI    I      E+++ +T+  V + I+  
Sbjct: 96  LLSKKIYDQFKEALEDRANKGHFAEITFIGIKSAVIKTHKKIEDSLEVTVDFVSEIITCI 155

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            DKD  ++S D +    V D W F ++I  SNPNW+LI+T
Sbjct: 156 KDKDKNIVSGDSDKIKTVYDTWVFSKDIKSSNPNWLLINT 195


>gi|310817171|ref|YP_003965135.1| transporter, Tim44 family protein [Ketogulonicigenium vulgare Y25]
 gi|308755906|gb|ADO43835.1| transporter, Tim44 family protein [Ketogulonicigenium vulgare Y25]
          Length = 219

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 99/205 (48%), Gaps = 10/205 (4%)

Query: 26  QLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLN 85
           +LR VLG + G EKP +     +    KR    +I    G  +D +D +    P G+   
Sbjct: 21  RLRSVLGSRDGFEKPIAQVPPEEA--RKRPTLDVIE--GGPDRDIVDHV----PEGSATA 72

Query: 86  KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145
            ++  +      F   +FL+ +R +YE I+ +F  G +  +   +   V+  F   ++ R
Sbjct: 73  LIIGQMKKAEPSFSLSEFLSGSRGAYEMILMAFERGDIEPVRGFIAPEVFDAFAGVIADR 132

Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISASYDKDNLLISSDPEIF 203
           ++    V++  +GI D+ + +A+ +  T    + +R V +  S   D D  ++   P++ 
Sbjct: 133 QARGLKVEAHFIGIRDVGLDDAAFDPATGEAELVVRFVAEMTSVVRDADGTVVEGAPDVA 192

Query: 204 GKVIDIWTFVRNIPPSNPNWVLIST 228
            +  D+WTF R +  S+PNW L++T
Sbjct: 193 KRQKDVWTFARKMGASDPNWTLVAT 217


>gi|83950785|ref|ZP_00959518.1| transporter, Tim44 family protein [Roseovarius nubinhibens ISM]
 gi|83838684|gb|EAP77980.1| transporter, Tim44 family protein [Roseovarius nubinhibens ISM]
          Length = 214

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 104/218 (47%), Gaps = 11/218 (5%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           +L+ A I  F+ L+LR VLG + G E P S     +   +    +G   +  G   D  D
Sbjct: 4   LLVLAGIAIFLLLRLRSVLGTRDGFEPPRS-----ELPGAPDRRQGFEVIEGGPDLDITD 58

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
            + E       L ++ R    +   F   +FL+ +R +YE I+ SF  GK+  I   +  
Sbjct: 59  HVPEDSDAAAALAEMKR----IEPSFSVSEFLSGSRQAYEWILMSFENGKLDEIVPFLSP 114

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISASYD 190
            V++ F   +  R+     V++   G+ D+ +I+A++++ T    IT++ +G+  S   +
Sbjct: 115 DVHEAFAQVIDARQEKNLTVEAEFYGVRDVTLIDAALDDTTKAAEITVKFLGELSSVVRN 174

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           +   +I   P    +  D WTF R +   +PNW L++T
Sbjct: 175 EQGEIIEGTPGEPKRQKDTWTFERVMGSDDPNWRLVAT 212


>gi|294085200|ref|YP_003551960.1| hypothetical protein SAR116_1633 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664775|gb|ADE39876.1| hypothetical protein SAR116_1633 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 212

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 30/227 (13%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVF--SKRDERGIITLGKG 65
           I++FA I   + L+L+ VLG++TG     ++KP      G  V   S +DE G +  G G
Sbjct: 6   IIIFAVIAVLLVLRLKSVLGQRTGFEQPQDKKPMQAANDGDVVPFPSNKDETGALN-GHG 64

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                         I T L K  R+       F    FL  A  ++E ++ ++ EG +  
Sbjct: 65  --------------IAT-LRKADRN-------FTEAAFLGGATQAFEMVLRAYAEGDLAQ 102

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           +++L+   + Q F  S+  R +N++++   L  I +  I+N ++ ++   +T+       
Sbjct: 103 LKRLLGYDLLQSFTQSIQKRNANKESLTIDLENIKEASILNIAVVDSVAAVTVHFHSVQT 162

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
             + D D  +I  D     +++DIWTF R++  ++PNW L+ T+  +
Sbjct: 163 RIARDADENIIDEDESQSQEIVDIWTFERDLTLNDPNWKLVETETAD 209


>gi|84514927|ref|ZP_01002290.1| hypothetical protein SKA53_11923 [Loktanella vestfoldensis SKA53]
 gi|84511086|gb|EAQ07540.1| hypothetical protein SKA53_11923 [Loktanella vestfoldensis SKA53]
          Length = 211

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 10/217 (4%)

Query: 14  LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73
           ++ A I  F+ L+LRGVLG + G EKP       +   + R +     +  G   D  D 
Sbjct: 1   MVLAGIAVFLILRLRGVLGTREGFEKPAVT----RQETTPRRKHDFDVIEGGPDLDITDH 56

Query: 74  INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
           +         L  + R    V  DF+  +FL  AR +YE I+ +F    + +I   +   
Sbjct: 57  VQADSAAAKALAAMKR----VDPDFNVTEFLGGARGAYEMILMAFENSDLDSIVPFISHD 112

Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQFISASYDK 191
           VY+ F   +  R+     V +S +GI DM + +A  +E T    +++R   +  S   + 
Sbjct: 113 VYEAFASVVDDRQRQGLTVTASFIGISDMTLAHAEFDEATKEGEVSVRFKSEMTSVVRNA 172

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           +  ++    +   +++D WTF R +   +PNW L++T
Sbjct: 173 EGEVVEGSTKEIKRLVDTWTFARKMDAGDPNWKLVAT 209


>gi|87198608|ref|YP_495865.1| import inner membrane translocase, subunit Tim44 [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134289|gb|ABD25031.1| import inner membrane translocase, subunit Tim44 [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 247

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 109/232 (46%), Gaps = 11/232 (4%)

Query: 8   SGDFL----ILLFAFITFFVFLQLRGVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITL 62
           SG+ L    I++ A I  F+ L+L  VLG++   +E+P           +K  + G +  
Sbjct: 13  SGNLLVIVQIVILAMIAAFLGLRLYSVLGRRPERDEEPMRRRIEQPDPSAKPHQPGSMGN 72

Query: 63  GKGKKKDNLD------SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116
            +  +   L       +  E           +R I++    FD   FL  A+ +Y  I++
Sbjct: 73  ARSAETGALAPRPRELAAPEAQTFDNSAEAGVRAIIAADRRFDVAQFLAGAKGAYGMILE 132

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F+ G    + +L D+ VY+ F  ++  R +  + + + L+ I++ +II ASIE  T  I
Sbjct: 133 AFWRGDKEELAQLCDADVYEGFASAIDARANAGETIDARLIRIEEARIIGASIEGTTARI 192

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            +R +    S + + +  +++   +      D+WTF R++   +P+W+L  T
Sbjct: 193 AVRFLADIASVTRNAEGHVVAGSLDDAIDARDLWTFRRDLTSRDPDWLLDET 244


>gi|254512041|ref|ZP_05124108.1| transporter, Tim44 family [Rhodobacteraceae bacterium KLH11]
 gi|221535752|gb|EEE38740.1| transporter, Tim44 family [Rhodobacteraceae bacterium KLH11]
          Length = 219

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 105/229 (45%), Gaps = 18/229 (7%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRD----ERGIIT 61
           M+S    +L+ A I  F+ L+L+ VLG + G EKP         +  +RD     R    
Sbjct: 1   MNSPLIQLLVLAGIAIFLILRLKSVLGTREGFEKP--------PLQQQRDTNDARRDFEV 52

Query: 62  LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
           +  G   D  D + E       L  + R    V   F   +F+  AR +YE IV  F +G
Sbjct: 53  IEGGPDHDITDHVAEDSEQAETLTAMKR----VEPSFSVSEFVQGARGAYEMIVMGFEKG 108

Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIR 179
            +  I+  +   V+  F   ++ R+     +++  +G+ +  + +   +++T    IT+R
Sbjct: 109 NLDEIQPFLSEEVFDTFVSVVADREDKGLTIEAEFIGVRETTLADVKFDKDTNQAEITMR 168

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            +G+  S   D+   +I  +P    +  D WTF R +   +PNW+L++T
Sbjct: 169 FIGELTSVVRDRGGDIIEGNPNTVKRQKDSWTFARVMGLDDPNWLLVAT 217


>gi|126734398|ref|ZP_01750145.1| import inner membrane translocase, subunit Tim44 [Roseobacter sp.
           CCS2]
 gi|126717264|gb|EBA14128.1| import inner membrane translocase, subunit Tim44 [Roseobacter sp.
           CCS2]
          Length = 220

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 98/225 (43%), Gaps = 9/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+LRGVLG + G EKP            K D      +  G
Sbjct: 1   MNSPLIQLLVLAGIAVFLILRLRGVLGTREGFEKPAVTRPEPSSRVGKPD---FDVIEGG 57

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D  D I E    G+   K + D+      F+  +FL  AR +YE I+ +F  G + +
Sbjct: 58  PDLDITDHIEE----GSDSAKALADMKRADPSFNVSEFLGGARGAYEMILMAFENGDLDS 113

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183
           I   +   VY+ F   +  R+     V +  +GI DM +  A  ++      +++R   +
Sbjct: 114 IVPFISEDVYEAFASVVDERQRQGLTVDAKFIGISDMTLTEAVFDDFSKEGEVSVRFKSE 173

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             S   D    +I        +  D WTF R +   +PNW L++T
Sbjct: 174 MTSVVRDNAGDIIEGSETEIKRQKDTWTFARKMDADDPNWRLVAT 218


>gi|148556731|ref|YP_001264313.1| import inner membrane translocase subunit Tim44 [Sphingomonas
           wittichii RW1]
 gi|148501921|gb|ABQ70175.1| import inner membrane translocase, subunit Tim44 [Sphingomonas
           wittichii RW1]
          Length = 226

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 99/219 (45%), Gaps = 13/219 (5%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK-KDNL 71
           I++ A +  FV  +L  VLG++TG+E+  +                      G+   +N 
Sbjct: 14  IVILAMVFLFVAFRLWSVLGRRTGHEQTIARPAEAAPAPIG----------AGRSLPENA 63

Query: 72  DSINELFP--IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
             +    P  +  R    +R I S    FD   FL  AR++Y  I+++++ G   A+ +L
Sbjct: 64  TPVLPAKPAVVEPRAEAGVRAIQSADGGFDAAQFLEGARSAYRMILEAYWRGDEEALRRL 123

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
            D  VY+ F  +++ R+   + + + LV I+   I  A +   T  +T+R      + + 
Sbjct: 124 TDDDVYEAFAAAITERREANEVLDNRLVSIESAVIEQARMNGQTANVTVRFDADIAAVTR 183

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           D +  +++          D+WTF R++   +PNW L+ T
Sbjct: 184 DGEGNVVAGSLTDAVPTHDVWTFSRHVRSDDPNWTLVET 222


>gi|254707406|ref|ZP_05169234.1| calcium-binding EF-hand [Brucella pinnipedialis M163/99/10]
          Length = 164

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 83/149 (55%), Gaps = 4/149 (2%)

Query: 20  TFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
              +FLQLR VLG++TGNEKP    ++   S     +  +   +++L +   + +  +I+
Sbjct: 15  AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74

Query: 76  ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
           ++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   VY
Sbjct: 75  KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134

Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164
           + F  ++  R+   + V+SS VGID   I
Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGI 163


>gi|110677837|ref|YP_680844.1| hypothetical protein RD1_0444 [Roseobacter denitrificans OCh 114]
 gi|109453953|gb|ABG30158.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 220

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 104/218 (47%), Gaps = 10/218 (4%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           +L+ A I  F+  +L+ VLG + G    F    +      +   R    +  G   D  D
Sbjct: 9   LLVLAGIAVFLIFRLKNVLGTRDG----FEPGPAQAPTSDRSPTRDFEVIEGGPDLDITD 64

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
            ++E       L  + R    +   F+  +FL  AR +YE IV  +  G++  I+  +  
Sbjct: 65  HVDEHSDAAEALANMKR----LEPGFNVTEFLGGARGAYEMIVMGYENGELADIQPFLAE 120

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISASYD 190
            +Y+ F D ++ R+     ++++ +G+ ++K+I+A+++ +T    +TIR   +  SA  +
Sbjct: 121 DIYESFVDGVAAREDQGLTIEANFIGVRELKLIDATLDPDTNEAELTIRFTAELTSAVRN 180

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            +  +I        +  D W+F R +   +PNW+L+ST
Sbjct: 181 SEGEIIEGSLTDVKRQKDTWSFARPMGSDDPNWILVST 218


>gi|21328722|gb|AAM48728.1| conserved hypothetical protein [uncultured marine proteobacterium]
          Length = 216

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 106/219 (48%), Gaps = 13/219 (5%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII-TLGKGKKKDNL 71
           +L  A I  ++ L+LRGVLG + G+E P +       + ++ D+R  +  +  G  +D  
Sbjct: 6   LLALAGIAIYLILKLRGVLGTRDGHEGPRAN------IVARADDRPKLEVIDGGPDQDIT 59

Query: 72  DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
           D   E     +   + +  +      F   +FL  ++++YE I+ +F  G + +++  ++
Sbjct: 60  DHAAE----DSDAARALLGMKHAEPSFSVTEFLYGSKSAYEMILMAFENGDLGSVKAFLN 115

Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASY 189
             VY  F   +  RK+   ++++  +G+ D  ++ A+ +   N   I +R + +  S   
Sbjct: 116 QDVYDAFASVVEARKAQGLSIEAEFIGVRDTGLMGATFDPKTNAAEIDVRFICELTSVLR 175

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           + D  +I  +     +  D+WTF R +   +PNW LI+T
Sbjct: 176 NSDGDIIEGNETEVKRQRDVWTFGRTMGADDPNWQLIAT 214


>gi|261314892|ref|ZP_05954089.1| import inner membrane translocase subunit Tim44 [Brucella
           pinnipedialis M163/99/10]
 gi|261303918|gb|EEY07415.1| import inner membrane translocase subunit Tim44 [Brucella
           pinnipedialis M163/99/10]
          Length = 168

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 83/149 (55%), Gaps = 4/149 (2%)

Query: 20  TFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
              +FLQLR VLG++TGNEKP    ++   S     +  +   +++L +   + +  +I+
Sbjct: 19  AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 78

Query: 76  ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
           ++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   VY
Sbjct: 79  KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 138

Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164
           + F  ++  R+   + V+SS VGID   I
Sbjct: 139 EGFVAAIDEREKRGETVRSSFVGIDKAGI 167


>gi|163732954|ref|ZP_02140398.1| hypothetical protein RLO149_09850 [Roseobacter litoralis Och 149]
 gi|161393489|gb|EDQ17814.1| hypothetical protein RLO149_09850 [Roseobacter litoralis Och 149]
          Length = 220

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 104/218 (47%), Gaps = 10/218 (4%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           +L+ A I  F+  +L+ VLG + G    F    S   +      R    +  G   D  D
Sbjct: 9   LLVLAGIAVFLIFRLKNVLGTRDG----FEPGPSQTPMSDSAPMRDFEVIEGGPDLDITD 64

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
            + E     +   + + ++  +   F+  +FL  AR +YE IV  +  G++  I+  +  
Sbjct: 65  HVEE----NSDAAEALANMKRLEPGFNVTEFLGGARGAYEMIVMGYENGELADIQPFLAE 120

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI--EENTVYITIRIVGQFISASYD 190
            +Y+ F D ++ R+     +++S +G+ ++K+++A++  E N   +TIR   +  SA  +
Sbjct: 121 DIYESFVDGVAAREDQGLTIEASFIGVRELKLMDATLDPETNEGELTIRFTAELTSAVRN 180

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            +  +I        +  D W+F R +   +PNW+L+ST
Sbjct: 181 SEGEIIEGSLTEVKRQKDTWSFARPMGSDDPNWILVST 218


>gi|323135818|ref|ZP_08070901.1| import inner membrane translocase subunit Tim44 [Methylocystis sp.
           ATCC 49242]
 gi|322398909|gb|EFY01428.1| import inner membrane translocase subunit Tim44 [Methylocystis sp.
           ATCC 49242]
          Length = 233

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 102/231 (44%), Gaps = 14/231 (6%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
           D  +++FA +  FV  +LR VLG +   + P    F  +    +    G   L      D
Sbjct: 9   DPSLVVFAALAVFVIWKLRSVLGVRVDRDAPPPAQFQPR----RPSPAGATPLPGAAPLD 64

Query: 70  NLDSINELFPI--------GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
           +  +     P         G      +  I +    FD + FL+ AR +Y+ IV +F  G
Sbjct: 65  DGAAARRNVPASWEGVAEKGGAAASGLDAIAAADPRFDGQAFLDGARRAYDMIVSAFARG 124

Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
               +  L+   V+  F   ++ R+ N + ++++++ ID   + +A        IT+R  
Sbjct: 125 DRDQLRPLLSKEVFDGFAAEIARREENGETMETAVIAIDSALVESARAAPRLNEITVRFA 184

Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            + ++   +K+   I     I   V+++WTF R+   S+PNW L++T+  E
Sbjct: 185 TRLMNLRRNKEGETIEGGHTI--PVVELWTFARDPRASDPNWKLVATRPAE 233


>gi|149185516|ref|ZP_01863832.1| hypothetical protein ED21_20864 [Erythrobacter sp. SD-21]
 gi|148830736|gb|EDL49171.1| hypothetical protein ED21_20864 [Erythrobacter sp. SD-21]
          Length = 218

 Score = 81.6 bits (200), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 108/225 (48%), Gaps = 13/225 (5%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEK-PFSGFFSGKYVFSKRDERGIITLGKG---K 66
           + I++ A I  F+ L+L  VLG+++ +E+ P    F          ER      +    +
Sbjct: 3   YEIVILAAIAAFLGLRLYSVLGERSEHEEEPARHRFDAPDAVPPAAERPAAPARESVRLR 62

Query: 67  KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
             DN  S NE           +R I S    FD   FL  A+ +Y  I+++F++G    +
Sbjct: 63  SVDNASSANE---------NAIRAIASADPRFDLLAFLEGAKAAYGMILEAFWKGDKDTL 113

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
             L D  VY  F+ ++  R +  +++++ LV I+D  I +A ++  T  I++  V    S
Sbjct: 114 RDLTDDDVYAGFSGAIDARDTAGESLENRLVRIEDATIHSAELDNRTARISVLFVSDIAS 173

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
            + DKD  +I+   +   +  DIWTF RN+   +PNWVL  T  G
Sbjct: 174 LTRDKDGNVIAGSLDDAVESRDIWTFTRNVDAMDPNWVLDETDQG 218


>gi|159045985|ref|YP_001534779.1| import inner membrane translocase [Dinoroseobacter shibae DFL 12]
 gi|157913745|gb|ABV95178.1| import inner membrane translocase [Dinoroseobacter shibae DFL 12]
          Length = 221

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 107/228 (46%), Gaps = 14/228 (6%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEK---PFSGFFSGKYVFSKRDERGIITL 62
           M+S    IL+   +  F+ L+LR VLG + G EK   P  G    + V  +RD      +
Sbjct: 1   MNSNMLQILVLLGVAVFLILRLRSVLGTREGFEKKPVPLDG--PERDVTPRRD---FEVI 55

Query: 63  GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
             G   D  D +    P G+   K +  +      F+  +FL  A+ +YE I+ SF  G 
Sbjct: 56  EGGPDTDITDHV----PDGSDSAKALAAMKMAEPGFNVTEFLGGAKGAYEWILMSFENGD 111

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRI 180
           +  ++  +   + + F++ +  R      V++  VG+ +  ++ A+ + +T    +T+R 
Sbjct: 112 MDDVQGFLSEELSEAFSEVIEQRNEQGLTVEAEFVGVRETTLVEAAFDRDTREGEVTVRF 171

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           VG+      + +  ++  DP    +  D+WTF R +   +PNW L++T
Sbjct: 172 VGELTFVVRNAEGEIVEGDPTEIKRQKDVWTFARVMGSDDPNWRLVAT 219


>gi|148259158|ref|YP_001233285.1| import inner membrane translocase, subunit Tim44 [Acidiphilium
           cryptum JF-5]
 gi|326402311|ref|YP_004282392.1| putative transporter [Acidiphilium multivorum AIU301]
 gi|146400839|gb|ABQ29366.1| import inner membrane translocase, subunit Tim44 [Acidiphilium
           cryptum JF-5]
 gi|325049172|dbj|BAJ79510.1| putative transporter [Acidiphilium multivorum AIU301]
          Length = 221

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 100/219 (45%), Gaps = 6/219 (2%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           I+L A +  F+ L+LR VLG++TG E+P     +      +    G +  G  +   +  
Sbjct: 9   IVLLALVAGFLVLRLRSVLGRRTGYERPPMPEPTAAGGMQRPG--GPVIEGVAEPPRSTR 66

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
            +       T + + +  I      FDP  FL+ A  S+  IV +F  G + A+  L+  
Sbjct: 67  PVPAPH---TVVGQTLARIAQAERGFDPARFLDGAEASFRRIVLAFAAGDLAALRPLLTP 123

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            V+  F  +++ R    +   + +V I +  I  A +      I +R V    + + D+ 
Sbjct: 124 GVFATFEQAVAQRAEAGETQHTEIVRIVEATIDEAELLGGEAVIVVRFVSDQQNYTRDRQ 183

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
             +I+   E   +++D+W+F +++  ++P W L + + G
Sbjct: 184 GQVIAGT-EAMTEIVDLWSFEKSLGAADPTWRLAAARSG 221


>gi|114328998|ref|YP_746155.1| transporter [Granulibacter bethesdensis CGDNIH1]
 gi|114317172|gb|ABI63232.1| transporter [Granulibacter bethesdensis CGDNIH1]
          Length = 231

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 107/227 (47%), Gaps = 25/227 (11%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYV-----FSKRDERGIITLGKGKK 67
           ++L   I  F+ L+LR VLG++ G E+P      G+          R  R    + + + 
Sbjct: 16  LVLLGMIAVFLVLRLRSVLGRRVGFERPEVPANQGQTGNRIPGLPVRLRRPDAAVAEART 75

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
               D+ +    +  R+ +V R        FD   FLN A  ++  IV ++ +G+  A+ 
Sbjct: 76  YVLPDASSPTGQVLARMKEVDRS-------FDAVRFLNNAEQAFRVIVTAYAQGEREALR 128

Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
            L+    +  F  ++  R+ +    ++ +  I D++I NA +E+    +TIR    F+S 
Sbjct: 129 PLLTEATFTIFCQAIDAREQDGARQQTEIQSIRDIRIENARLEQTQAALTIR----FVS- 183

Query: 188 SYDKDNLLI--SSDP----EIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             D+ N+++  + +P    E   +++D+WTF R++   +P W L  T
Sbjct: 184 --DQHNVMLNRTGEPVEGVEGLTEIVDVWTFERDLASRDPTWRLSGT 228


>gi|294010816|ref|YP_003544276.1| hypothetical protein SJA_C1-08300 [Sphingobium japonicum UT26S]
 gi|292674146|dbj|BAI95664.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
          Length = 218

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 116/228 (50%), Gaps = 25/228 (10%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           ++I++ A I  F+ L+L  VLGK+TG+E+        +      +ER  +T+ + +    
Sbjct: 2   YVIVILAMIAGFLALRLYSVLGKRTGHEQ--------EPALRPAEERAKVTIVQPR---- 49

Query: 71  LDSINELFPIGTRLNKVM---------RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
              + E+     RL++ +         R +++    FD   F+  A+ +Y+ ++++F+ G
Sbjct: 50  --PVPEMAGDSVRLSEGLIAPGGEAGVRALIAADRSFDVPQFVEGAKAAYKMVLEAFWRG 107

Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
               +E L D+ V   F ++++ R++    + + LV I+ ++I++A +      I++R  
Sbjct: 108 DRQELEWLCDADVLASFEEAIAAREAEGHVLDNRLVRIEKVQIVDAGVTGRMAEISLRFE 167

Query: 182 GQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
               + + D+D N++  S  +  G   DIWTF R++  ++PNW L  T
Sbjct: 168 ADIAAVTRDRDGNVVAGSLTDAVG-TNDIWTFTRDLRSTDPNWKLSET 214


>gi|4098584|gb|AAD00329.1| unknown [Rhodobacter capsulatus]
          Length = 183

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 85/166 (51%), Gaps = 6/166 (3%)

Query: 65  GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
           G   D +D +    P G+     +  +  V   F+   FL  ++ +YE I+ +F  G + 
Sbjct: 20  GPDHDIIDHV----PEGSDAAVALAQMKRVEPTFNVGAFLQGSKVAYEMILMAFERGDLS 75

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVG 182
           A+ + +   V + F  +++ R+     V++S +G+ ++ +  AS  E++    +T+R  G
Sbjct: 76  AVRRFLAPEVLEAFETAVADRQRQGLTVEASFLGLRELVLTEASFNESSREAEVTVRFGG 135

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           + IS + D +  ++  DP+   K  D WTF R +  S+PNW L++T
Sbjct: 136 ELISVARDANGQIVEGDPKAPRKQRDSWTFARVMGSSDPNWQLVAT 181


>gi|326386373|ref|ZP_08207996.1| import inner membrane translocase, subunit Tim44 [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209034|gb|EGD59828.1| import inner membrane translocase, subunit Tim44 [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 218

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 105/225 (46%), Gaps = 16/225 (7%)

Query: 16  FAFITFFVFLQLRGVLGKKT-GNEKPFSGFFSG-------KYVFSKRDERGIITLGKGKK 67
            A I  F+ L+L  VLG++  G+++P              + + SK  E+  +T      
Sbjct: 1   MAMIALFLGLRLYAVLGRRAEGSDEPLRRRVEQPDPQAALRAMPSKLPEKPAMT-----G 55

Query: 68  KDNLDSIN-ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
           + +L +     F  G      +R I++    FD   FL  A+ +Y  ++D+F+ G   A+
Sbjct: 56  RPSLPTAEPSAFDAGAETG--IRAIIAADRRFDVALFLTGAKAAYGMVLDAFWRGDKDAL 113

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
            +L +  VY+ F  ++  RK   + V + L+ +DD +I++A        I +R V    +
Sbjct: 114 AQLCERSVYESFAAAIDARKQAGETVDARLIRVDDARIVSADFNAPVARIAVRFVADVAT 173

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
            + + +  +++   +   +  D+WTF R++   +P+W L  T  G
Sbjct: 174 VTRNTEGTVVAGSLDDAIESRDLWTFSRDLTSRDPDWQLDETDQG 218


>gi|73667391|ref|YP_303407.1| membrane translocase, subunit Tim44 [Ehrlichia canis str. Jake]
 gi|72394532|gb|AAZ68809.1| membrane translocase, subunit Tim44 [Ehrlichia canis str. Jake]
          Length = 212

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 101/217 (46%), Gaps = 18/217 (8%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           + ++A +  F+F +L   LGK +G                  +    I++     ++  D
Sbjct: 4   LAIYALLAAFIFFRLYNSLGKTSG--------------LQPNNHSQAISIVVEDTQEYDD 49

Query: 73  SINELFPIGTRLNKVMRDIVSVYT----DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
           +  E+  +    NK  + I++       +F  K F++ +  ++E I+ +F EG VH +  
Sbjct: 50  AEIEIESVMDTCNKDEKSIINQIKKKDKEFSLKHFMDGSIKAFEIIIKAFNEGNVHILSM 109

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
           L+D+ +Y  F++ +  RK      +  +V +   KII   +  N  YIT++ + + I+  
Sbjct: 110 LLDTNLYNSFSEEIENRKKLNHVYEDIIVSVTSHKIIKLDLSGNIAYITVKFITEQINFV 169

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
            DKD+ +I        K+ D+WTF ++I  SN  W L
Sbjct: 170 KDKDDNVIQGSTSKINKIEDVWTFRKDITLSNKKWYL 206


>gi|83944953|ref|ZP_00957319.1| hypothetical protein OA2633_09999 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851735|gb|EAP89590.1| hypothetical protein OA2633_09999 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 219

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 13/221 (5%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL FA +  F+ ++L  VLGK +G         + + V  ++ ER     G G    ++ 
Sbjct: 6   ILFFAGLAVFLGVRLYMVLGKSSGR--------AAEDVEREQRERAEAA-GMGAPPPSMR 56

Query: 73  SINELFPIGTRL----NKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
              +  P   +      + +  I      FDP +F   AR +YE IV ++ +G   A+E 
Sbjct: 57  PQADETPFAAQFAGPAGEGLMQIAQHDPAFDPDEFRKGARAAYEMIVLAYAKGDREALEP 116

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
           L+  RV + ++ +++ R+     V + +  I   +I  AS+ +N   + I    +  S +
Sbjct: 117 LLTERVKKAYDQAIAAREEKNWTVTTEIDRIKSAEISEASLNDNRAKVKIAFSVELASET 176

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            +    ++  D      V +IW+F R++   NPNW L   K
Sbjct: 177 RNAQGDVVEGDLTTLKTVDEIWSFERDVTSENPNWRLSGVK 217


>gi|68171233|ref|ZP_00544637.1| Mitochondrial import inner membrane translocase, subunit Tim44
           [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658281|ref|YP_507053.1| tim44-like domain-containing protein [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67999353|gb|EAM85998.1| Mitochondrial import inner membrane translocase, subunit Tim44
           [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599738|gb|ABD45207.1| tim44-like domain protein [Ehrlichia chaffeensis str. Arkansas]
          Length = 212

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 102/215 (47%), Gaps = 14/215 (6%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           + ++AF+  F+F +L   LGK +G +             +   +   I +   ++ D  D
Sbjct: 4   LAIYAFLAAFIFFRLYHSLGKTSGLQS------------NSHSQTISIIMEDTQEHDTAD 51

Query: 73  -SINELFPIGTRLNK-VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
             I+ +  I    +K ++  I     +F  + F++ +  ++E I+ +F EG +H +  L+
Sbjct: 52  IDIDSVMEICNENDKSIINHIKKKDKEFSLRHFMDGSIKAFEIIIKAFNEGNIHILSMLL 111

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
           D+ +Y  F + +  RK+  +  +  +V I   KI   S+  N  YIT++ + + I+   D
Sbjct: 112 DTNLYNSFVEEIENRKALGQLYEDIIVSITSHKITKLSLSGNIAYITVKFISEQINFVKD 171

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
           KD+ ++        K+ D WTF ++   SN  W L
Sbjct: 172 KDDNILQGSTSKINKIEDTWTFRKDTTLSNKKWYL 206


>gi|89052682|ref|YP_508133.1| import inner membrane translocase, subunit Tim44 [Jannaschia sp.
           CCS1]
 gi|88862231|gb|ABD53108.1| import inner membrane translocase subunit Tim44 [Jannaschia sp.
           CCS1]
          Length = 235

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 10/214 (4%)

Query: 17  AFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINE 76
           A I  F+ L+LR VLG + G EKP     S     S+RD R    + +G   D++    +
Sbjct: 28  AGIAIFLILRLRSVLGTRDGFEKPPVAPGS-----SRRDVRRDFEVIEGGPDDDILDHVD 82

Query: 77  LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136
               G+   K +  +      F   +FL  AR +YE I+ +F  G V  +   +   V +
Sbjct: 83  D---GSDSAKALAAMKMAEPGFRVGEFLGGARQAYEMILMAFERGDVDGLRPFLADDVLE 139

Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQFISASYDKDNL 194
            F   +  R     ++++  VG+ ++ +  A+ + +     +T+R +G+  S   + D  
Sbjct: 140 TFETVIDQRNEQGLSIEAEFVGVREITLQEATFDRSAGVGEVTVRFIGELTSVVRNADGE 199

Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           +I  D     +  D+WTF R +   +PNW L++T
Sbjct: 200 IIEGDATEIKRQRDVWTFARKMGADDPNWALVAT 233


>gi|114769764|ref|ZP_01447374.1| transporter, Tim44 family protein [alpha proteobacterium HTCC2255]
 gi|114549469|gb|EAU52351.1| transporter, Tim44 family protein [alpha proteobacterium HTCC2255]
          Length = 218

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 104/223 (46%), Gaps = 17/223 (7%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEK---PFSGFFSGKYVFSKRDERGIITLGKGKK 67
           F +++   I  FV L+LR VLG ++G E    P   F   K    + D +          
Sbjct: 6   FQLVILGVIALFVILRLRSVLGTRSGFEPTNVPKPTFQKEKTPTEENDNK--------ID 57

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
           +D  D ++   P G  L+++ +      ++F   +F+  A  +YE I+ +F EG    + 
Sbjct: 58  RDIADYVSVDSPSGKALSQMKK----AESNFLVTEFIQGAGQAYEMILIAFEEGDRDGLR 113

Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFI 185
             +   VY  F   ++ R+  + N+ ++ +G+ ++K+ +A  +       IT+ +V +  
Sbjct: 114 PFLADDVYDSFESVITEREKAQLNIDATFIGLREIKLTSAEYDWRAKEGEITLSLVAELT 173

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           +   + ++ +I  D     K  D WTF R +   NPNW L++T
Sbjct: 174 TVVKNINDEIIEGDKNKIKKQKDTWTFSRIMGNDNPNWTLVAT 216


>gi|162147851|ref|YP_001602312.1| transporter protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786428|emb|CAP56010.1| putative transporter protein [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 228

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 16/225 (7%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           F ++LF  +  F+ L+LR +LG + G E             S     G +  G+ +    
Sbjct: 12  FDLVLFGLVAAFLALRLRSILGTRVGVEP--------APPPSAVPRPGPVIEGRAEPPAT 63

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           L   +   P  TR+ +V+  I     DF P  FL     ++  IV +F  G V  + + +
Sbjct: 64  LTDYDVPAP-ETRVGQVLAAIAQQERDFVPAQFLKGVEAAFRQIVLAFAAGDVAMLRERL 122

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE----NTVYITIRIVGQFIS 186
            +  +  F  ++ +R+ + +  K+ +  I  + I++A+IEE        I +RIV   IS
Sbjct: 123 TANAFSAFEAAIRSREQSGEIQKAEVRAIASLAIVDAAIEERDGATHARIDVRIVSDQIS 182

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVR--NIPPSNPNWVLISTK 229
            + DKD   ++   +   +  D+WTF R   +  S   W L +++
Sbjct: 183 LTSDKDGHPVAGT-DAVTEFSDLWTFERPLGVAISGAAWRLAASR 226


>gi|209542471|ref|YP_002274700.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530148|gb|ACI50085.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 226

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 16/225 (7%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           F ++LF  +  F+ L+LR +LG + G E             S     G +  G+ +    
Sbjct: 10  FDLVLFGLVAAFLALRLRSILGTRVGVEP--------APPPSAVPRPGPVIEGRAEPPAT 61

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           L   +   P  TR+ +V+  I     DF P  FL     ++  IV +F  G V  + + +
Sbjct: 62  LTDYDVPAP-ETRVGQVLAAIAQQERDFVPAQFLKGVEAAFRQIVLAFAAGDVAMLRERL 120

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE----NTVYITIRIVGQFIS 186
            +  +  F  ++ +R+ + +  K+ +  I  + I++A+IEE        I +RIV   IS
Sbjct: 121 TANAFSAFEAAIRSREQSGEIQKAEVRAIASLAIVDAAIEERDGATHARIDVRIVSDQIS 180

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVR--NIPPSNPNWVLISTK 229
            + DKD   ++   +   +  D+WTF R   +  S   W L +++
Sbjct: 181 LTSDKDGHPVAGT-DAVTEFSDLWTFERPLGVAISGAAWRLAASR 224


>gi|254295483|ref|YP_003061506.1| import inner membrane translocase subunit Tim44 [Hirschia baltica
           ATCC 49814]
 gi|254044014|gb|ACT60809.1| import inner membrane translocase subunit Tim44 [Hirschia baltica
           ATCC 49814]
          Length = 200

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 24/216 (11%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
           D  +++FA + FFV  +L  VLG KTG E P S     +    KR         +G  + 
Sbjct: 2   DIELIIFAAVAFFVLYRLYSVLGTKTGAEPPPSVV---REATQKRKN------SEGSDES 52

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
           N+      F  G   +  M +I  + + F P DF  +++ +YE IV++F EG    +  L
Sbjct: 53  NVTPFRPSF-TGPGAS-AMEEISQIDSTFSPSDFTRKSKKAYEMIVEAFAEGDKETLSNL 110

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           +   VY+ +  ++  R+ N       L+ +   +I +A + +         +GQ +S S+
Sbjct: 111 LVDDVYEAYVSAIDEREQNNTE-PLRLMRLKSAEIADAELLDGD-------IGQ-VSVSF 161

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
           +       SD E      +IWTF R++  SNP W+L
Sbjct: 162 EAQ----LSDGENLRTAKEIWTFERSLKSSNPAWLL 193


>gi|218460136|ref|ZP_03500227.1| hypothetical protein RetlK5_11796 [Rhizobium etli Kim 5]
          Length = 121

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 6/119 (5%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG--IITLG 63
           M S DF+ L F      +F QLR VLG++TGNEKP    ++ +            ++TL 
Sbjct: 1   MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60

Query: 64  K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
           +    G+ +D   +I+ +   GT LN+ +R +      F+PK+FLN AR +YE IV ++
Sbjct: 61  RRDATGEDEDRFAAIDAVAAPGTPLNESLRALNKADPSFNPKEFLNGARMAYEMIVMAY 119


>gi|161170260|gb|ABX59230.1| uncharacterized protein conserved in bacteria [uncultured marine
           bacterium EB000_55B11]
 gi|297183789|gb|ADI19912.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 218

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 102/224 (45%), Gaps = 19/224 (8%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           F +++   I  FV L+LR VLG ++G    F      K  F K          K   ++N
Sbjct: 6   FQLVILGVIALFVILRLRSVLGTRSG----FEPTNVPKPTFQKE---------KTPTEEN 52

Query: 71  LDSIN----ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
            + I+    +   + +   K +  +    ++F   +F+  A  +YE I+ +F EG    +
Sbjct: 53  DNKIDRDIADYVSVDSSSGKALSQMKKAESNFLVTEFIQGAGQAYEMILIAFEEGDRDGL 112

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQF 184
              +   VY  F   ++ R+  + N+ ++ +G+ ++K+ +A  +       IT+ +V + 
Sbjct: 113 RPFLADDVYDSFESVITEREKAQLNIDATFIGLREIKLTSAEYDWRAKEGEITLSLVAEL 172

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            +   + ++ +I  D     K  D WTF R +   NPNW L++T
Sbjct: 173 TTVVKNINDEIIEGDKNKIKKQKDTWTFSRIMGNDNPNWTLVAT 216


>gi|330813377|ref|YP_004357616.1| putative translocase transmembrane protein with Tim44 Pfam domain
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486472|gb|AEA80877.1| putative translocase transmembrane protein with Tim44 Pfam domain
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 193

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 93/210 (44%), Gaps = 35/210 (16%)

Query: 18  FITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINEL 77
            I  F+FL+LR VLGK   N  P    F+ K                   +D+   + E 
Sbjct: 1   MIAGFIFLRLRNVLGKGADNS-PIKPNFANK------------------SRDDFSFVKE- 40

Query: 78  FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD 137
             + T  NK +         FD   F   A  +YE I+++F +G   +++ L+  ++Y D
Sbjct: 41  --VRTESNKPV---------FDEASFKKGAEYAYEMIINAFAKGDKQSLKPLLTKKLYLD 89

Query: 138 FNDSLSTRKSNEKNVKSSL--VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
           F   +  R  NEK + SSL  +GI+ M I   S       +T R + Q I+   ++   +
Sbjct: 90  FEKIIDDR--NEKKLTSSLTFIGIEKMSIDKVSNVNTKYKVTARFISQIINCLKNEKGEV 147

Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
           +  D E      D+W+F R++  S+P W L
Sbjct: 148 VEGDAEKTKTTTDVWSFERDLKDSDPTWYL 177


>gi|269959143|ref|YP_003328932.1| Tim44-like domain containing protein [Anaplasma centrale str.
           Israel]
 gi|269848974|gb|ACZ49618.1| Tim44-like domain containing protein [Anaplasma centrale str.
           Israel]
          Length = 217

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 103/222 (46%), Gaps = 16/222 (7%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG-NEKP---FSGFFSGKYVFSKRDERGIITLGKGKKK 68
           + ++AF+  F+F +L G LGK +  N +P   + G  SG+   S          G  K +
Sbjct: 4   LAIYAFVAAFIFFRLYGSLGKASSVNFQPSAIYPGQVSGEQAASD---------GSVKPQ 54

Query: 69  D-NLDSI-NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
           D  +DS+  +  P+  +++ V   I +   DF  K F+  +  ++EAIV +  +G    +
Sbjct: 55  DIPVDSVVADSAPVD-QISSVFEAIKARNKDFSVKHFIEGSAAAFEAIVSALNQGNTELL 113

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
             L++  +Y  F   +  R+   +  +  +V I   K+ NA +E N   IT++ V + I+
Sbjct: 114 SSLLNRHMYNSFVKEVERRRDAGRVHEDVVVSITSQKVTNAELEGNFATITVQFVTEQIN 173

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
              D +  ++         + D W F R++  +   W L ST
Sbjct: 174 VVRDVEGQVVDGSTSKVNVIEDTWKFERDVTAAGRRWYLAST 215


>gi|296535049|ref|ZP_06897314.1| Tim44 domain protein [Roseomonas cervicalis ATCC 49957]
 gi|296264626|gb|EFH10986.1| Tim44 domain protein [Roseomonas cervicalis ATCC 49957]
          Length = 165

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 1/148 (0%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
           T + + ++ I      FDP  FL  A  ++  IV +F  G    +  L+    Y  F  +
Sbjct: 17  TPVGQALQRIRQADAGFDPYAFLGGAEGAFRMIVTAFAAGDRATLRDLLSEDTYAGFEQA 76

Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201
           ++ R+S  +  ++ + G+ +M I  A +  +   IT+RIV   ++ +       +S   E
Sbjct: 77  ITARESAGERQRTEIHGVHEMAIDAADLRGSVADITLRIVSDQVNLTTGPQGEAVSGT-E 135

Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTK 229
              ++ D+WTF R++   +P W L+ T+
Sbjct: 136 AVTELTDVWTFQRDLRSGDPTWKLVGTQ 163


>gi|296115110|ref|ZP_06833751.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295978211|gb|EFG84948.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 227

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 103/224 (45%), Gaps = 17/224 (7%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           ++    +  F+ L+LRG+LGK+ G E       + + +        +I   +GK +    
Sbjct: 12  LVFLGLVAVFLVLRLRGILGKRVGAEP------AARTMQPTPTPAPVI---EGKPEPVAP 62

Query: 73  SINELFPIG-TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
           +     P   TR+ +V+  I +    F P  F+ +  +++  IV ++  G +  + + + 
Sbjct: 63  ATTYDIPTPDTRVGQVLSAIAARQQGFTPDGFIRQVEDAFRQIVQAYAVGDIETLRQHLT 122

Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT----VYITIRIVGQFISA 187
              +  F  ++ +R+   + ++S +  I DM II+A +  +       I +RIV   +S 
Sbjct: 123 ESTFTAFEAAIVSRQQAHETMRSEIRDITDMAIIDAELSPDVSVPYARIEVRIVSDQVSV 182

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTK 229
           + D++   +S   +   +  D+WTF R +  + P   W L +++
Sbjct: 183 TLDQNGQPVSGV-DAVTEFSDLWTFERILGAATPGAQWRLGASR 225


>gi|114571519|ref|YP_758199.1| import inner membrane translocase Tim44 [Maricaulis maris MCS10]
 gi|114341981|gb|ABI67261.1| import inner membrane translocase, subunit Tim44 [Maricaulis maris
           MCS10]
          Length = 206

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 64/132 (48%)

Query: 94  VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153
           V T FDP      A+N+Y  IV++F  G    +E L+   V   +  ++  R    + V+
Sbjct: 69  VDTRFDPTAVKEGAQNAYVMIVEAFAAGDRKVLEPLLAPNVLDRYTTAIDQRADRGETVR 128

Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213
           + +  + D+ II A   +NT  I +R V +  + + D D+ +++ D      V + W F 
Sbjct: 129 TEVERLKDVDIIEAGHADNTARIKVRFVAEIATETRDSDDAVVAGDIGRLSTVTEDWVFE 188

Query: 214 RNIPPSNPNWVL 225
           R     +PNWVL
Sbjct: 189 RRTNKGDPNWVL 200


>gi|262277816|ref|ZP_06055609.1| import inner membrane translocase subunit Tim44 [alpha
           proteobacterium HIMB114]
 gi|262224919|gb|EEY75378.1| import inner membrane translocase subunit Tim44 [alpha
           proteobacterium HIMB114]
          Length = 204

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 95/213 (44%), Gaps = 29/213 (13%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           I+L A +  F+ L+LR  LGK   N  P    F+                          
Sbjct: 10  IILLAIMAGFILLRLRSTLGKGADN-MPMKARFTQA------------------------ 44

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
             NE F      +++ +D     T FD K F+  A  +YE I+++F +G   A++ L+  
Sbjct: 45  QSNEEFTKPIIEDEIKQDT----TKFDEKIFIKGAEAAYEIIINAFAKGDRKALKPLLTK 100

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            +Y++F   +  R+S + + + S +GI + KI++   ++    +  + V + ++      
Sbjct: 101 DLYKNFEGVIKERESKKISSQMSFIGIKETKILDIDNKDTFYKVKTKFVSEIVNCLKSDK 160

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
             +I  +PE    V D+W F +++  ++P W L
Sbjct: 161 GEVIEGNPEEIKLVTDVWVFEKDLKNNDPTWYL 193


>gi|58040316|ref|YP_192280.1| putative translocase transmembrane protein [Gluconobacter oxydans
           621H]
 gi|58002730|gb|AAW61624.1| Putative translocase transmembrane protein [Gluconobacter oxydans
           621H]
          Length = 265

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 107/242 (44%), Gaps = 26/242 (10%)

Query: 12  LILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFSKRDER--------- 57
           L++LF  +   + ++L  VLG++ G      E+P +GF  G    +  D           
Sbjct: 24  LVVLF-VLAVALGVRLYRVLGRRVGMQGVRQERPGAGFGPGAQKGAAPDAARPSIPPPLP 82

Query: 58  GIITLGKGKKKDNLDSI-----NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
           G +    G      D        E+    TR+  V+ +I SV+  F P  FL EA  ++ 
Sbjct: 83  GQVAGKPGAAPGVFDQAVPDVAYEIPAPATRVGTVLGEIGSVFPGFSPDGFLKEAEGTFR 142

Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA---SI 169
            +V +F  G   A+EKL+       F+ ++  R    +  +S L GI+ + I++A   S 
Sbjct: 143 QVVPAFAVGDRTALEKLLTPASMDSFSAAIDARVQAGETQRSDLRGIESLSILDAMLVSA 202

Query: 170 EENTVY--ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
           E+ T    I ++IV + ++   D++   +    E   +  D+W F R    S+  W L +
Sbjct: 203 EDGTRVGRIEVKIVSRQVNILTDREGEPVVGT-EAVTEFHDLWLFERVAGQSDARWRLAA 261

Query: 228 TK 229
           ++
Sbjct: 262 SR 263


>gi|329114333|ref|ZP_08243095.1| Import Inner Membrane Translocase Subunit [Acetobacter pomorum
           DM001]
 gi|326696409|gb|EGE48088.1| Import Inner Membrane Translocase Subunit [Acetobacter pomorum
           DM001]
          Length = 242

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 104/221 (47%), Gaps = 12/221 (5%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           ++L A +  F+ L+LR VLGK+ G + P       +   + R     +  GK ++ +   
Sbjct: 28  LVLLALVAAFLVLRLRSVLGKRVGIQ-PVQVQLQVRPDAAPR-----VVEGKPEQAEAAA 81

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
             +   P GTR+  ++ DI      F P+ FLN A+ ++  +V ++ +G ++ ++  +  
Sbjct: 82  EFDIPAP-GTRVGTLLADIRQKDPSFTPQQFLNGAQTAFAQVVGAYAQGNLNVLKTYLTP 140

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN---ASIEENT-VYITIRIVGQFISAS 188
            V+  F   ++ R + E+  ++ +  I  + I +     +E  T   I +RIV   IS  
Sbjct: 141 AVFSAFEAGITARTNAEETQRTDVKAIRSLAIEDVRLTPMEAGTAAAIDVRIVSDQISLV 200

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            +K+   ++   +   +  D+WTF R +  +   W L + +
Sbjct: 201 LNKEGQPVTGT-DAVTEFSDLWTFERLLDVNGSTWRLAAAR 240


>gi|302381470|ref|YP_003817293.1| import inner membrane translocase subunit Tim44 [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192098|gb|ADK99669.1| import inner membrane translocase subunit Tim44 [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 214

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 21/219 (9%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           FLI++FA I  FV  QL  VLGKK G +              + D +    L        
Sbjct: 5   FLIVIFAVIAAFVLFQLYNVLGKKVGRQ-------------PQDDAKAPPALPATGPDAP 51

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           L +      +   L      + +    FDP  F++ AR +YE IV  +  G   A++ L+
Sbjct: 52  LRTPG----VDATLLAAAASLRARDPAFDPAKFIDGARQAYETIVRGYAAGDRAALKPLL 107

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF---ISA 187
              V   F   ++ R++  +  +   +      +  AS E +     +R + +    I  
Sbjct: 108 TPAVLDSFETGIAARETRGETEQVEFLHPPRADLELASAEGDRAVAKVRFLAELRSKIMP 167

Query: 188 SYDKDNLLISSDPEIFG-KVIDIWTFVRNIPPSNPNWVL 225
             D+      ++P I   +  + WTF R++  S+PNWVL
Sbjct: 168 PADEATPGAPAEPRIEERRTAEHWTFERSLGASDPNWVL 206


>gi|258541896|ref|YP_003187329.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256632974|dbj|BAH98949.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256636031|dbj|BAI02000.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256639086|dbj|BAI05048.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256642140|dbj|BAI08095.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256645195|dbj|BAI11143.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256648250|dbj|BAI14191.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256651303|dbj|BAI17237.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654294|dbj|BAI20221.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 242

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 106/223 (47%), Gaps = 16/223 (7%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           ++L A +  F+ L+LR VLGK+ G + P       +   + R     +  GK ++ +   
Sbjct: 28  LVLLALVAAFLVLRLRSVLGKRVGIQ-PVQVKLQVRPDAAPR-----VVEGKPEQAETAA 81

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
             +   P GTR+  ++ DI      F P+ FLN A+ ++  +V ++ +G V  ++  +  
Sbjct: 82  EFDIPAP-GTRVGTLLADIRQKDPSFTPQQFLNGAQIAFAQVVGAYAQGNVDVLKTYLTP 140

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSL-----VGIDDMKIINASIEENT-VYITIRIVGQFIS 186
            V   F   ++ R + E+  ++ +     + I+D++I  + +E  T   I +RIV   IS
Sbjct: 141 AVLAAFEAGITARANAEETQRTDVKAIRSLAIEDVRI--SPMEAGTAAAIDVRIVSDQIS 198

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
              +K+   ++   +   +  D+WTF R +  +   W L + +
Sbjct: 199 LVLNKEGQPVTGT-DAVTEFSDLWTFERLLDVNGSTWRLAAAR 240


>gi|295691579|ref|YP_003595272.1| import inner membrane translocase subunit Tim44 [Caulobacter segnis
           ATCC 21756]
 gi|295433482|gb|ADG12654.1| import inner membrane translocase subunit Tim44 [Caulobacter segnis
           ATCC 21756]
          Length = 198

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 92/218 (42%), Gaps = 36/218 (16%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL  A +   V  QL   LG++ G                ++ E   +  G G       
Sbjct: 4   ILFLAAVAAIVLYQLYATLGRRVG----------------RQPEDTPVKAGAGGPA---- 43

Query: 73  SINELFPIGTRLNKVMRD-----IVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
                 P+ T  + V+R      + +   DFDP  F+  AR +YE IV ++ +G    ++
Sbjct: 44  ------PVTTDPHPVLRSEGLAALKARQPDFDPAKFMTGARAAYEQIVTAYADGDRETLK 97

Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
            L+   V  +F  +++ R++  ++ K   +    + + +  +  +T    +RI+ +  + 
Sbjct: 98  PLLAPEVMANFEQAMAAREAAGRSEKVEFLTSPRLDLESVDLVGDTAKAVVRILAEVRTR 157

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
           + D+    +        +  ++WTF R +  +NPNW+L
Sbjct: 158 TKDERGEGVDDR-----RTAELWTFEREVRNANPNWLL 190


>gi|218680118|ref|ZP_03528015.1| import inner membrane translocase subunit Tim44 [Rhizobium etli
           CIAT 894]
          Length = 78

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 44/67 (65%)

Query: 163 KIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222
           +I +A  + +   IT+RI+ Q ISA+YDK ++LI  D E   +V D+WTF R+    +PN
Sbjct: 8   EITHAETKGSEAQITVRIISQLISATYDKADVLIEGDAENVAEVNDLWTFARDTRSRDPN 67

Query: 223 WVLISTK 229
           W L++T+
Sbjct: 68  WKLVATE 74


>gi|167648993|ref|YP_001686656.1| import inner membrane translocase subunit Tim44 [Caulobacter sp.
           K31]
 gi|167351423|gb|ABZ74158.1| import inner membrane translocase subunit Tim44 [Caulobacter sp.
           K31]
          Length = 199

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 25/222 (11%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           F  ++ A +   +  QL   LG++ G + P     +     + RD + +   G       
Sbjct: 2   FEWIILAALAAVILYQLYATLGRRVGRQ-PEDAPAAVPASVAPRDVKTLEVPG------- 53

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
            ++++ L  +  R             DFD   FL+ AR +YE IV +F  G    ++ L+
Sbjct: 54  -EALSGLAALRAR-----------QADFDIGHFLSGARQAYEMIVKAFAAGDRETLKPLL 101

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
            + V  +F  +++ R++  +  K+  +      + +  +E +     +RI+ +  + S  
Sbjct: 102 AADVMANFEAAIADREAAGRTEKAEFLATPRTDLDSIKVEGDVARAVVRILAEVRTRSTS 161

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
                 + D     +  D+WTF R++   NPNW L+   + E
Sbjct: 162 A-----AGDAVDDRRTADLWTFERDLKSRNPNWTLVRVDVAE 198


>gi|222474811|ref|YP_002563226.1| hypothetical protein AMF_080 [Anaplasma marginale str. Florida]
 gi|255002781|ref|ZP_05277745.1| hypothetical protein AmarPR_00408 [Anaplasma marginale str. Puerto
           Rico]
 gi|222418947|gb|ACM48970.1| Conserved hypothetical protein [Anaplasma marginale str. Florida]
          Length = 219

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 96/226 (42%), Gaps = 24/226 (10%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           + ++AF+  F+F +L G LGK +      S  F    ++ ++          G++  +  
Sbjct: 6   LAIYAFVAAFIFFRLYGSLGKAS------SVNFQPSAIYPEQ--------AGGEQAASDG 51

Query: 73  SINEL-FPIGT---------RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
           SIN    P+ +         +++ V   I      F  K F+  +  ++EAIV +  +G 
Sbjct: 52  SINSQDIPVSSVVADCASVEQISSVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGN 111

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
              +  L+   ++  F   +  RKS     +  +V I   K+ +A ++ N+  IT++ V 
Sbjct: 112 AEFLSSLLSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVT 171

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           + I+   D    ++         + D W F R+I  S   W L ST
Sbjct: 172 EQINVVRDAGGQVVDGSTSKVNTIEDTWKFARDITTSGRRWYLTST 217


>gi|255003915|ref|ZP_05278716.1| hypothetical protein AmarV_00428 [Anaplasma marginale str.
           Virginia]
          Length = 217

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 96/226 (42%), Gaps = 24/226 (10%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           + ++AF+  F+F +L G LGK +      S  F    ++ ++          G++  +  
Sbjct: 4   LAIYAFVAAFIFFRLYGSLGKAS------SVNFQPSAIYPEQ--------AGGEQAASDG 49

Query: 73  SINEL-FPIGT---------RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
           SIN    P+ +         +++ V   I      F  K F+  +  ++EAIV +  +G 
Sbjct: 50  SINSQDIPVSSVVADCASVEQISSVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGN 109

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
              +  L+   ++  F   +  RKS     +  +V I   K+ +A ++ N+  IT++ V 
Sbjct: 110 AEFLSSLLSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVT 169

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           + I+   D    ++         + D W F R+I  S   W L ST
Sbjct: 170 EQINVVRDAGGQVVDGSTSKVNTIEDTWKFARDITTSGRRWYLTST 215


>gi|16127971|ref|NP_422535.1| hypothetical protein CC_3741 [Caulobacter crescentus CB15]
 gi|221236793|ref|YP_002519230.1| transporter [Caulobacter crescentus NA1000]
 gi|13425513|gb|AAK25703.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220965966|gb|ACL97322.1| transporter [Caulobacter crescentus NA1000]
          Length = 234

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 85/215 (39%), Gaps = 29/215 (13%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           F IL  A +   V  QL   LG++ G +                 E   +T   G     
Sbjct: 41  FQILFLAAVAALVLYQLYSTLGRRVGRQP----------------EDAAVTAMPGAAPAP 84

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           +D + +   + T        + +   DFDP  FL   R +YE IV ++ EG    +  L+
Sbjct: 85  VDPVLQAEGVAT--------LRARQPDFDPARFLMGVRAAYEQIVKAYAEGDRETLTPLL 136

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              V  +F  ++  R++  +  K   +    + +    +  +T    +RI+ +  + + D
Sbjct: 137 APDVMDNFERAMVARETAGRTEKVEFLTPPRVDLERVDVVGDTAKAVVRILAEVRTRTKD 196

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
           +    +        +  ++WTF R +  ++PNW L
Sbjct: 197 ERGEGVDDR-----RTAELWTFEREVKSTDPNWHL 226


>gi|42520013|ref|NP_965928.1| hypothetical protein WD0107 [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42409750|gb|AAS13862.1| conserved domain protein [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 216

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 101/216 (46%), Gaps = 18/216 (8%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71
           ++++A +  F+F +L   LG+    N K  +           R    ++   +G     +
Sbjct: 4   LVIYALLAAFIFSRLYNSLGRSANLNLKKLTNVLD-----VSRSREDVVENIEGY----I 54

Query: 72  DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
           DS +E       +    + I+    DF    F+  +  ++E I+  F +G +  ++ L+D
Sbjct: 55  DSNDE-----NSIKVTYKQILKKNKDFSISHFIEGSSIAFELIIKCFNQGNLSQLKPLLD 109

Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
             +Y +F + +  RK   +++   +V I   KI+   + +N V+I +  + + I+   + 
Sbjct: 110 KDLYDNFAEKIKHRKEVHESI---IVSIVSQKILEIKLVKNAVFIAVYFLSEQINFVKNN 166

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
           +  +IS       KV D+W F +N+  S+P+W+L+S
Sbjct: 167 EGDIISGSTSTINKVEDVWQFKKNVNSSDPSWLLVS 202


>gi|254994672|ref|ZP_05276862.1| hypothetical protein AmarM_00445 [Anaplasma marginale str.
           Mississippi]
          Length = 217

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 24/226 (10%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           + ++AF+  F+F +L G LGK +      S  F    ++ ++          G++  +  
Sbjct: 4   LAIYAFVAAFIFFRLYGSLGKAS------SVNFQPSAIYPEQ--------AGGEQAASDG 49

Query: 73  SINEL-FPIGTRLNKV--MRDIVSVYT-------DFDPKDFLNEARNSYEAIVDSFFEGK 122
           SIN    P+ + +     +  I SV+         F  K F+  +  ++EAIV +  +G 
Sbjct: 50  SINSQDIPVSSVVADCASVEQIASVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGN 109

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
              +  L+   ++  F   +  RKS     +  +V I   K+ +A ++ N+  IT++ V 
Sbjct: 110 AEFLSSLLSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVT 169

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           + I+   D    ++         + D W F R+I  S   W L ST
Sbjct: 170 EQINVVRDAGGQVVDGSTSKVNTIEDTWKFERDITTSGRRWYLTST 215


>gi|58584799|ref|YP_198372.1| hypothetical protein Wbm0542 [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|58419115|gb|AAW71130.1| Uncharacterized conserved protein related to eukaryotic translocase
           of inner mitochondrial membrane [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 218

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 18/216 (8%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71
           ++++A +  FVF +L   LG+ T  N K  +         S+  E  +  +     +D +
Sbjct: 4   LVIYALLAAFVFSRLYNSLGRSTSLNLKKLTSVLD----ISQVREDVVENI-----EDYI 54

Query: 72  DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
           DS N+  PI     ++++       DF    F+  +   +E I+  F +G +  ++ L+D
Sbjct: 55  DS-NDKDPIKATYEQILQK----NKDFSISHFMEGSGVVFELIIKYFNQGNLSQLKPLLD 109

Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
             +Y +F   +  RK   +  +S +V I   KI+   + +N V+I +  + + I+   + 
Sbjct: 110 KDLYNNFAGKIKQRK---EIYESIIVSIVSQKILEIKLVKNVVFIAVYFLSEQINFVKND 166

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
              +IS       KV D+W F +N+  SNP+W+L S
Sbjct: 167 KGDVISGSTSTINKVEDVWQFKKNVTSSNPSWLLTS 202


>gi|56416441|ref|YP_153515.1| hypothetical protein AM113 [Anaplasma marginale str. St. Maries]
 gi|56387673|gb|AAV86260.1| hypothetical protein AM113 [Anaplasma marginale str. St. Maries]
          Length = 217

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 96/226 (42%), Gaps = 24/226 (10%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           + ++AF+  F+F +L G LGK +      S  F    ++ ++          G++  +  
Sbjct: 4   LAIYAFVAAFIFFRLYGSLGKAS------SVNFQPSAIYPEQ--------AGGEQAASDG 49

Query: 73  SINEL-FPIGT---------RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
           SIN    P+ +         +++ V   I      F  K F+  +  ++EAIV +  +G 
Sbjct: 50  SINSQDIPVSSVVADCASVEQISSVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGN 109

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
              +  L+   ++  F   +  RKS     +  +V I   K+ +A ++ N+  IT++ V 
Sbjct: 110 AEFLSSLLSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVT 169

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           + I+   D    ++         + D W F R+I  S   W L ST
Sbjct: 170 EQINVVRDAGGQVVDGSTSKVNTIEDTWKFERDITTSGRRWYLTST 215


>gi|114799709|ref|YP_758741.1| Tim44 domain-containing protein [Hyphomonas neptunium ATCC 15444]
 gi|114739883|gb|ABI78008.1| Tim44 domain protein [Hyphomonas neptunium ATCC 15444]
          Length = 204

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 94/213 (44%), Gaps = 23/213 (10%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           +L+ A +  FV  +L   LG+  G+E P            KR   G +   + ++ +N  
Sbjct: 8   VLILAAVALFVLWRLYSALGRG-GDEGPVQ---RPAPTPEKRPTPGEMPAPQPRRIENER 63

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
            I      G      + DI +    F  ++F+  A+ +Y+ IV ++  G  +A+  L+D 
Sbjct: 64  PIFTGPAAG-----ALEDIYNADRSFSTEEFMRGAKAAYQLIVGAYARGDRNALRPLLDD 118

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            VY+ ++ +++ R +        L+ I   +I  A ++ +   + +R   +         
Sbjct: 119 DVYEAWDAAIAERDATGARA-FELLRIKKAEIDRAELDGSMARVMVRYEAEL-------- 169

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
                 D E    V +IWTF+R++  S+PNW+L
Sbjct: 170 -----GDGETTRIVREIWTFMRDVSSSDPNWLL 197


>gi|99034421|ref|ZP_01314428.1| hypothetical protein Wendoof_01000767 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 198

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 73/139 (52%), Gaps = 3/139 (2%)

Query: 89  RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148
           + I+    DF    F+  +  ++E I+  F +G +  ++ L+D  +Y +F + +  RK  
Sbjct: 49  KQILKKNKDFSISHFIEGSSIAFELIIKCFNQGNLSQLKPLLDKDLYDNFAEKIKHRKEV 108

Query: 149 EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208
            +++   +V I   KI+   + +N V+I +  + + I+   + +  +IS       KV D
Sbjct: 109 HESI---IVSIVSQKILEIKLVKNAVFIAVYFLSEQINFVKNNEGDIISGSTSTINKVED 165

Query: 209 IWTFVRNIPPSNPNWVLIS 227
           +W F +N+  S+P+W+L+S
Sbjct: 166 VWQFKKNVNSSDPSWLLVS 184


>gi|225677153|ref|ZP_03788152.1| hypothetical protein WUni_006480 [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590820|gb|EEH12048.1| hypothetical protein WUni_006480 [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 216

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 100/216 (46%), Gaps = 18/216 (8%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71
           ++++A +  F+F +L   LG+    N K  +           R    ++   +G     +
Sbjct: 4   LVIYALLAAFIFSRLYNSLGRSANLNLKKLTNVLD-----VSRSREDVVENIEGY----I 54

Query: 72  DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
           DS +E       +    + I+    DF    F+  +  ++E I+  F +G +  ++ L+D
Sbjct: 55  DSNDE-----NSIKVTYKQILKKNKDFSISHFIEGSSIAFELIIKCFNQGNLSQLKPLLD 109

Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
             +Y +F + +  RK   +++   +V I   KI+   + +N V+I +  + + I+   + 
Sbjct: 110 KDLYDNFAEKIKHRKEVHESI---IVSIVSQKILEIKLVKNAVFIAVYFLSEQINFVKNN 166

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
              +IS       KV D+W F +N+  S+P+W+L+S
Sbjct: 167 KGDIISGSTSTINKVEDVWQFKKNVNSSDPSWLLVS 202


>gi|58696732|ref|ZP_00372276.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58698125|ref|ZP_00373048.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225629991|ref|YP_002726782.1| hypothetical protein WRi_001450 [Wolbachia sp. wRi]
 gi|58535371|gb|EAL59447.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58537084|gb|EAL60206.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225591972|gb|ACN94991.1| hypothetical protein WRi_001450 [Wolbachia sp. wRi]
          Length = 216

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 70/131 (53%), Gaps = 3/131 (2%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
           DF    F+  +  ++E I+  F +G +  ++ L+D  +Y +F + +  RK   +++   +
Sbjct: 75  DFSISHFIEGSSIAFELIIKYFNQGNLSQLKPLLDKDLYDNFAEKIKHRKEVHESI---I 131

Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
           V I   KI+   + +N V+I +  + + I+   + +  +IS       KV D+W F +N+
Sbjct: 132 VSIVSQKILEIKLVKNVVFIAVYFLSEQINFVKNNEGDIISGSTSTINKVEDVWQFKKNV 191

Query: 217 PPSNPNWVLIS 227
             S+P+W+L+S
Sbjct: 192 NSSDPSWLLVS 202


>gi|56552532|ref|YP_163371.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|260753807|ref|YP_003226700.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|56544106|gb|AAV90260.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|258553170|gb|ACV76116.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 217

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 94/204 (46%), Gaps = 10/204 (4%)

Query: 27  LRGVLGKKTGNEKPFSGFFS-GKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLN 85
           L  VLG++TG+E+ F+        V ++ +   ++   + KK++ +        +     
Sbjct: 18  LYNVLGRRTGHEQSFTKPAEVSTTVVAQPNTALLMPASEQKKREEI--------VQPEAW 69

Query: 86  KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145
             +R IVS    FD   F+  A+++Y  I+++F++     +  +V   V++ F   +  R
Sbjct: 70  DGIRRIVSRDAHFDLTGFIEGAKSAYGKILEAFWQNDRSKLADMVSKDVFEAFQQVIEKR 129

Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
           ++    +++ LV ID   +  A IE +   IT+       +   + + ++I+        
Sbjct: 130 EAEGSRLENRLVNIDKALVQKAGIEGDNAIITVSYDAWISTMLRNHEGIMIAGSSTDALP 189

Query: 206 VIDIWTFVRNIPPS-NPNWVLIST 228
             D+WTF R+I      NW+L+ T
Sbjct: 190 THDVWTFSRSIKQEPKTNWLLVET 213


>gi|218459911|ref|ZP_03500002.1| putative translocase transmembrane protein [Rhizobium etli Kim 5]
          Length = 59

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 37/54 (68%)

Query: 176 ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           IT+RIV Q ISA+YDK + LI  D E   +V D+WTF R+    +PNW L++T+
Sbjct: 2   ITVRIVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATE 55


>gi|11992022|gb|AAG42409.1|AF300471_12 unknown [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 201

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 94/204 (46%), Gaps = 10/204 (4%)

Query: 27  LRGVLGKKTGNEKPFSGFFS-GKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLN 85
           L  VLG++TG+E+ F+        V ++ +   ++   + KK++ +        +     
Sbjct: 2   LYNVLGRRTGHEQSFTKPAEVSTTVVAQPNTALLMPASEQKKREEI--------VQPEAW 53

Query: 86  KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145
             +R IVS    FD   F+  A+++Y  I+++F++     +  +V   V++ F   +  R
Sbjct: 54  DGIRRIVSRDAHFDLTGFIEGAKSAYGKILEAFWQNDRSKLADMVSKDVFEAFQQVIEKR 113

Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
           ++    +++ LV ID   +  A IE +   IT+       +   + + ++I+        
Sbjct: 114 EAEGSRLENRLVNIDKALVQKAGIEGDNAIITVSYDAWISTMLRNHEGIMIAGSSTDALP 173

Query: 206 VIDIWTFVRNIPPS-NPNWVLIST 228
             D+WTF R+I      NW+L+ T
Sbjct: 174 THDVWTFSRSIKQEPKTNWLLVET 197


>gi|241762227|ref|ZP_04760309.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241373274|gb|EER62893.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 217

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 94/204 (46%), Gaps = 10/204 (4%)

Query: 27  LRGVLGKKTGNEKPFSGFFS-GKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLN 85
           L  VLG++TG+E+ F+        V ++ +   ++   + KK++ +        +     
Sbjct: 18  LYNVLGRRTGHEQSFTKPTEVSTTVVAQPNTALLMPASEQKKREEI--------VQPEAW 69

Query: 86  KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145
             +R IVS    FD   F+  A+++Y  I+++F++     +  +V   V++ F   +  R
Sbjct: 70  DGIRRIVSRDAHFDLTGFIEGAKSAYGKILEAFWQNDRSKLADMVSKDVFEAFQQVIEKR 129

Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
           ++    +++ LV ID   +  A IE +   IT+       +   + + ++I+        
Sbjct: 130 EAEGSRLENRLVNIDKALVQKAGIEGDNAIITVSYDAWISTMLRNHEGIMIAGSSTDALP 189

Query: 206 VIDIWTFVRNIPPS-NPNWVLIST 228
             D+WTF R+I      NW+L+ T
Sbjct: 190 THDVWTFSRSIKQEPKTNWLLVET 213


>gi|254417984|ref|ZP_05031708.1| Tim44-like domain superfamily [Brevundimonas sp. BAL3]
 gi|196184161|gb|EDX79137.1| Tim44-like domain superfamily [Brevundimonas sp. BAL3]
          Length = 213

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 32/225 (14%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI----ITLGKG 65
            F I++FA I   V  QL  VLGK+ G +              + D + +     +  + 
Sbjct: 4   QFQIVIFAVIAAIVLFQLYNVLGKRVGRQP-------------QEDAKALPSSPTSTAEA 50

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
            K   LD+       G +     RD       FDP  F+  AR +YE IV  +  G   A
Sbjct: 51  SKTPALDAATLASIAGLK----ARDPA-----FDPNRFVEGARQAYETIVRGYAAGDRAA 101

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           +  L+   V   F+  ++ R++  +      +      +  A+++ +     +R + +  
Sbjct: 102 LTPLLTPNVMASFDAGIAARETRGETETVEFLFPPRADLEGATVQGDKAVAKVRFLAELR 161

Query: 186 S----ASYDKDNLLISSDPEIFG-KVIDIWTFVRNIPPSNPNWVL 225
           S    AS D  +  ++ +P +   +  + WTF R +  ++PNWVL
Sbjct: 162 SRVTKASGDTAD-SVTGEPLVEERRTAEHWTFERTLGAADPNWVL 205


>gi|329891166|ref|ZP_08269509.1| tim44-like domain protein [Brevundimonas diminuta ATCC 11568]
 gi|328846467|gb|EGF96031.1| tim44-like domain protein [Brevundimonas diminuta ATCC 11568]
          Length = 205

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 84/218 (38%), Gaps = 26/218 (11%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKP---FSGFFSGKYVFSKRDERGIITLGKGKK 67
           F I++FA I   +  QL  VLGKK G +                +    RG +       
Sbjct: 3   FQIVIFAVIAAVLLFQLYNVLGKKVGRQPEDNPKPVPVPAAPAGAPEAARGPV------- 55

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
                       +   L   +  + +   +FDP  FL  AR +YE IV ++ +G   A+ 
Sbjct: 56  ------------VDPALTAAIAGLKTRDPNFDPHRFLEGARQAYETIVRAYAKGDRDALR 103

Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
            L+  +V   F   ++ R++        LV      +  A+ E +     +R + +   +
Sbjct: 104 PLLTDKVMGSFEAGIAAREARGDAESVELVHAPRADLELATTEGDRALAKVRFLAEVRGS 163

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
                   ++ +     +  +IWTF R +  S+PNW L
Sbjct: 164 LTPSGGETVTEE----RRTAEIWTFERRLGASDPNWAL 197


>gi|330993443|ref|ZP_08317378.1| putative transporter protein [Gluconacetobacter sp. SXCC-1]
 gi|329759473|gb|EGG75982.1| putative transporter protein [Gluconacetobacter sp. SXCC-1]
          Length = 258

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 104/235 (44%), Gaps = 26/235 (11%)

Query: 8   SGDFLI--LLFAFITFFVFLQLRGVLGKKTGNE---KPFSGFFSGKYVFSKRDERGIITL 62
           SG F +  ++   +  F+ L+LR +LG++ G E   +P +   + +             +
Sbjct: 35  SGHFPLDLVVLGLVAVFLVLRLRSILGRRVGAEPAVRPMAAQPAAQ------------PM 82

Query: 63  GKGKKKDNLDSINELFPIG-TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
            +   +    +I    P   TR+  V+  I ++   F P++F      ++  IV ++  G
Sbjct: 83  VEKPVEPPPPAITYEIPTPDTRVGGVLARIAALQPGFTPQEFARGTETAFRQIVGAYAAG 142

Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT-----VYI 176
            +  + + + +  +  F  ++ +R+   + ++S +  I D+ II A ++E         I
Sbjct: 143 DLDVLRERLTAATFGAFEAAIQSRQQAGEVLRSEIRDITDIAIIGAEVDEAAGPSPLARI 202

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTK 229
            +RIV   IS + D     ++   +   +  D+WTF R +  + P   W L +++
Sbjct: 203 EVRIVSDQISLTVDSSGHPVAGV-DAVTEFSDLWTFERLLGVNAPGAGWRLGASR 256


>gi|190571472|ref|YP_001975830.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018875|ref|ZP_03334683.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357744|emb|CAQ55195.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995826|gb|EEB56466.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 219

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 98/216 (45%), Gaps = 18/216 (8%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71
           ++++A +  F+F +L   LG+    N K  +G        S+  E  +  +      ++ 
Sbjct: 4   LVIYALLAAFIFSRLYNSLGRSASLNLKKLTGVLD----VSQSKEDVVENIEDYIYSNDK 59

Query: 72  DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
            SI   +    + NK          +F   +F+  +  ++E I+  F +G +  ++ L+D
Sbjct: 60  SSIETTYEQILQKNK----------EFSISNFIEGSSIAFELIIKYFNQGNLPQLKSLLD 109

Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
             +Y  F D +  RK   +++   +V I   KI+   + +N ++I +  + + I+   + 
Sbjct: 110 KDLYNSFVDKIKHRKETHESI---IVSIVSQKILEIKLVKNVIFIAVYFLSEQINFVKNN 166

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
           +  + S       KV D+W F +NI  S+  W+L+S
Sbjct: 167 EGNITSGSMSTINKVEDVWQFKKNINSSDLTWLLVS 202


>gi|197103473|ref|YP_002128850.1| hypothetical protein PHZ_c0007 [Phenylobacterium zucineum HLK1]
 gi|196476893|gb|ACG76421.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 205

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 92/221 (41%), Gaps = 23/221 (10%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           +++FA +   V  QL  VLG++ G +                +++      +G  +  +D
Sbjct: 6   LIIFAGLAAIVLYQLYSVLGRRVGRQP---------------EDQAAAEPAQGSVR-AVD 49

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
            + E    G  L  +   + ++   FD   FL  A+ +YE IV +F +G    ++ L+  
Sbjct: 50  RMAEPADDGVALTGLAA-VKALDPSFDVGHFLGGAKQAYEMIVRAFADGDRATLKNLLAP 108

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV-YITIRIVGQFISASYDK 191
           +V   F  ++  R++  +             +  A +    +  +T+R + +F S +   
Sbjct: 109 QVLASFEAAIDQREAEGRTESVEFFHPPRADLEKADVTGADLGRVTVRFLAEFRSRTKGP 168

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           +   +        +  ++WTF RN+   +PNW+L+     E
Sbjct: 169 EGEAVDDR-----RTAELWTFERNLKSRDPNWMLVHVDAAE 204


>gi|254796736|ref|YP_003081572.1| hypothetical protein NRI_0348 [Neorickettsia risticii str.
           Illinois]
 gi|254589983|gb|ACT69345.1| conserved hypothetical protein [Neorickettsia risticii str.
           Illinois]
          Length = 208

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 99/218 (45%), Gaps = 19/218 (8%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           ++L+A + FF+F +L    G+    E+           F   + + I+     KK   +D
Sbjct: 3   LVLYAILVFFIFNRLYASFGR-VSVERELG--------FKAAEVKEILE----KKVRAID 49

Query: 73  SINELFPIGTRLNKVM---RDIVSVY-TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
               + P  + L +++   ++I S++  DF    F+  A  ++E    +F +  +  + K
Sbjct: 50  QFTYVAP--SDLQEIVSAKKEIESLWKQDFSTDRFMEGAERAFEMFTKAFTDCDLKVLSK 107

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
           L+  + +   ++ ++ RK     ++ +LV +    +I   + +  +Y T+R V + I+  
Sbjct: 108 LLSKKAFSVVSEKVAQRKIRGNTLERTLVALRSKNLIKLDVIKGVLYATVRFVSEQINVV 167

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226
            D    ++S D +    + D W F R++   N +WV+ 
Sbjct: 168 RDDAGRILSGDHDTIEVIEDKWVFERSLRSPNNSWVVC 205


>gi|88608273|ref|YP_506249.1| Tim44-like domain-containing protein [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600442|gb|ABD45910.1| Tim44-like domain protein [Neorickettsia sennetsu str. Miyayama]
          Length = 208

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/218 (20%), Positives = 101/218 (46%), Gaps = 19/218 (8%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           ++L+A + FF+F +L    G+ +   +   GF + +        + I+     KK  ++D
Sbjct: 3   LILYAILVFFIFNRLYASFGRISVEREL--GFKAAEV-------KEILE----KKVRDID 49

Query: 73  SINELFPIGTRLNKVM---RDIVSVY-TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
               + P  + L +++   ++I S++  DF    F+  A  ++E    +F +  +  + K
Sbjct: 50  QFTYVAP--SDLQEIVSAKKEIESLWKQDFSTDRFMEGAERAFEMFTKAFTDCDLKVLSK 107

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
           L+  + +   ++ +  RK     ++ +LV +    +I   + +  +Y T+R V + I+  
Sbjct: 108 LLSKKAFSVVSEKIEQRKIRGNTLERTLVALRSKNLIKLDVIKGVLYATVRFVSEQINVV 167

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226
            D    ++S D +    + D W F R++   + +WV+ 
Sbjct: 168 RDDAGRVLSGDHDTIEVIEDKWIFERSLKSPHNSWVVC 205


>gi|329847374|ref|ZP_08262402.1| tim44-like domain protein [Asticcacaulis biprosthecum C19]
 gi|328842437|gb|EGF92006.1| tim44-like domain protein [Asticcacaulis biprosthecum C19]
          Length = 212

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 34/224 (15%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           +++FA +   +  QL  VLG+K G                 R E   +T+ KG    +L 
Sbjct: 4   LIIFAIVAVVILFQLYNVLGRKVGF----------------RAEDKPVTV-KGDDFGDLS 46

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
           +  +  P  +R+   +  + +   +F+  +FL +AR SYE +V +F +G++ A++  +  
Sbjct: 47  TKTDKLPEASRMPN-LEMLKTRDANFNELNFLEKARESYEQVVIAFHKGELDAVKDKLSD 105

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            VY  F  +L  R + E+ +  S V      I +   ++    I +R + + +   Y+K 
Sbjct: 106 TVYGIFAKALVGRAAPEETL--SFVDQPKADIDHIDFKDEVAQIRVRFLSELV---YEKT 160

Query: 193 NLLISS--------DPEI---FGKVIDIWTFVRNIPPSNPNWVL 225
                S         P++     +  + WTF + +  +N  W+L
Sbjct: 161 EAPAESAVPPTKADAPKVHRSHKRTAEYWTFQKGMKVANSPWLL 204


>gi|149192059|ref|ZP_01870285.1| hypothetical protein VSAK1_02529 [Vibrio shilonii AK1]
 gi|148834122|gb|EDL51133.1| hypothetical protein VSAK1_02529 [Vibrio shilonii AK1]
          Length = 294

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 34/224 (15%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           IL+F  I F +F  +RG+LG K G  N++     F G             T  + +++ N
Sbjct: 97  ILIFGLIAFVIFKFMRGMLGAKQGSMNQQRQQPAFGGN------------TRNQFEQQPN 144

Query: 71  LDSI----NELFPIGTRLNKVMRDIVSVYTD-FDPKDFLNEARNSYEAIVDSFFEGKVHA 125
             +     N     G        D+   Y   FD   FLN AR  Y  +  ++   ++H 
Sbjct: 145 FQNFEQPQNGGAATGGFGAAGHSDVPHNYPPGFDQAAFLNGAREHYRILQGAWNHNELHT 204

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           IE+ V   + QD    ++ R   E    + ++ + D +I+ A  + N   ++++  G++ 
Sbjct: 205 IEEYVSPSLLQDL---MAERAKLEGEQHTDVMYV-DAEIVRADFDANKAQLSLQFSGRYR 260

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            A  +     +  D E      DIW   R++   N  W+++  +
Sbjct: 261 DAVEN-----VEEDIE------DIWHLERDLTVPNAPWLIVGIQ 293


>gi|58617502|ref|YP_196701.1| hypothetical protein ERGA_CDS_07750 [Ehrlichia ruminantium str.
           Gardel]
 gi|58417114|emb|CAI28227.1| Hypothetical protein ERGA_CDS_07750 [Ehrlichia ruminantium str.
           Gardel]
          Length = 213

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/223 (20%), Positives = 99/223 (44%), Gaps = 21/223 (9%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
           + ++AF+  F+F +L   LG+ +G     + +P S       +  + D     T      
Sbjct: 4   LAIYAFVAAFIFFRLYNSLGRTSGLQPNNHSQPVS-------ILIQEDNNHDYT------ 50

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
             ++D  + +         +M  I     +F  K F++ +  +++ I+ +F EG +  + 
Sbjct: 51  --DIDIESVMESCDDNDQSIMNTIKRKDREFSLKYFMDGSMKAFDIIIKAFNEGNIQILC 108

Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
            L+D  +Y  F   +  RK+  +  +  +V I   KI    +  N  +IT++ + + I+ 
Sbjct: 109 SLLDKDLYNSFLTEIEYRKNLGQVYEDVIVSIIYHKITKLKLSGNIAHITVKFISEQINF 168

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIP-PSNPNWVLISTK 229
             D++  ++        K+ D+WTF +++   ++  W L S +
Sbjct: 169 VKDQEGNILQGSTSKINKIEDVWTFKKDMSLLTSKKWYLSSIQ 211


>gi|57239470|ref|YP_180606.1| hypothetical protein Erum7440 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579448|ref|YP_197660.1| hypothetical protein ERWE_CDS_07840 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161549|emb|CAH58476.1| conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58418074|emb|CAI27278.1| Hypothetical protein ERWE_CDS_07840 [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 213

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/223 (20%), Positives = 98/223 (43%), Gaps = 21/223 (9%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
           + ++AF+  F+F +L   LG+ +G     + +P S       +  + D     T      
Sbjct: 4   LAIYAFVAAFIFFRLYNSLGRTSGLQPNNHSQPVS-------ILIQEDNNHDYT------ 50

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
             ++D  + +         +M  I     +F  K F++ +  +++ I+ +F EG    + 
Sbjct: 51  --DIDIESVMESCDDNDKSIMSTIKRKDREFSLKYFMDGSMKAFDIIIKAFNEGNTQILC 108

Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
            L+D  +Y  F   +  RK+  +  +  +V I   KI    +  N  +IT++ + + I+ 
Sbjct: 109 SLLDKDLYNSFLTEIEYRKNLGQVYEDVIVSIIHHKITKLKLSGNIAHITVKFISEQINF 168

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIP-PSNPNWVLISTK 229
             D++  ++        K+ D+WTF +++   ++  W L S +
Sbjct: 169 VKDQEGNILQGSTSKINKIEDVWTFKKDMSLLTSKKWYLSSIQ 211


>gi|317050977|ref|YP_004112093.1| import inner membrane translocase subunit Tim44 [Desulfurispirillum
           indicum S5]
 gi|316946061|gb|ADU65537.1| import inner membrane translocase subunit Tim44 [Desulfurispirillum
           indicum S5]
          Length = 249

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 90/223 (40%), Gaps = 14/223 (6%)

Query: 7   DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
           +S  F I    FI   +F  +R + G+ + N  P   +  G      +D        + +
Sbjct: 28  NSATFSIFDILFIGAIIFFIVRALRGRTSRNNNPKDDWTLGG---KDQDSYSPTASNEPR 84

Query: 67  KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
                D I  L+P  T  +K +R I     +F   DFL  AR  +  +  +    ++  I
Sbjct: 85  TTPGADKITSLYPEQT-THKGLRPIEMSDPNFTEGDFLAAAREVFSTVQQAKANEELEQI 143

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
           E L+D  +     + ++T +   K V+     I    + +A  +  T  IT++       
Sbjct: 144 EFLMDKAMLNQLQEDIATWRKEGKRVQLDSATIHSALVADAIQQMGTDCITVK-----FE 198

Query: 187 ASYDKDNLL--ISSDPE-IFGKVIDIWTFVRNIPPSNPNWVLI 226
           A+ D+  L   +  +PE +   V + W F+RNI      W LI
Sbjct: 199 ATLDRTFLPVDVEGEPEPVHETVTEYWRFMRNI--GEAAWQLI 239


>gi|88607695|ref|YP_504724.1| Tim44-like domain-containing protein [Anaplasma phagocytophilum HZ]
 gi|88598758|gb|ABD44228.1| Tim44-like domain protein [Anaplasma phagocytophilum HZ]
          Length = 241

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 94/220 (42%), Gaps = 13/220 (5%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKR--DERGIITLGKGKKKDN 70
           + ++AF+  F+F +L   LG+ +      S  F G     ++  D+R  +     ++   
Sbjct: 30  LAIYAFVAAFIFFRLYSSLGRAS------SINFQGACATPEKPGDDRIALDAKNDQQDIP 83

Query: 71  LDSINE--LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
           L S+ E   F   +   +VMR   +   DF  ++F+  +  ++E I+ +   G    +  
Sbjct: 84  LTSVTEEEHFEEVSPGIEVMR---ARSMDFSLRNFMAGSAAAFEVIMKALNRGDTELLSS 140

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
           L+   +Y+ F   +  R S     +  +V I   KI  A +  +   IT++ + + I+  
Sbjct: 141 LLSDDIYKSFEKEIMRRNSEGHIHEDVVVSIVSQKITAAKVIGDVAAITVKFLTEQINVV 200

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            +    +I+        V D WTF +N    +  W L +T
Sbjct: 201 RNAAGDVIAGSTSKINVVEDFWTFEKNANSPSRKWYLSAT 240


>gi|260767913|ref|ZP_05876847.1| hypothetical protein VFA_000962 [Vibrio furnissii CIP 102972]
 gi|260615943|gb|EEX41128.1| hypothetical protein VFA_000962 [Vibrio furnissii CIP 102972]
 gi|315179616|gb|ADT86530.1| Tim44-like domain family [Vibrio furnissii NCTC 11218]
          Length = 291

 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/225 (19%), Positives = 96/225 (42%), Gaps = 40/225 (17%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGN------EKP-FSGFFSGKYVFSKRDERGIITLGKG 65
           IL+   I F +F  +RG+LG K G+      ++P F G     +                
Sbjct: 98  ILIIGLIAFVIFKLMRGLLGAKQGSMNQHQQQQPAFGGMNRNTF---------------- 141

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTD-FDPKDFLNEARNSYEAIVDSFFEGKVH 124
            ++ N+ +  +    G   +++  D+   Y D FD   F+N AR  Y  +  ++   ++ 
Sbjct: 142 -EQPNVHNFEQPQNSGGFGSQMQSDVPHNYPDGFDRVAFVNGAREHYRILQGAWNHNQLE 200

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
            IE+ V   +++D     + R   + + ++ ++ + D +I+ A  + N   ++++  G++
Sbjct: 201 TIEEYVSPSLFEDLK---AERAKIDTDPQTDVMYV-DAEIVRADYDANKAQLSLQFSGRY 256

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
              S D +             + DIW   R++   N  W+++  +
Sbjct: 257 RDPSEDLEE-----------NIDDIWHLERDLTTPNAPWLIVGIQ 290


>gi|163803720|ref|ZP_02197579.1| hypothetical protein 1103602000427_AND4_04363 [Vibrio sp. AND4]
 gi|159172471|gb|EDP57338.1| hypothetical protein AND4_04363 [Vibrio sp. AND4]
          Length = 288

 Score = 48.1 bits (113), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 47/228 (20%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGN-----EKPFSGFFSGKYVFS-----KRDERGIITL 62
           IL+   I F +F  +RG+LG K G      ++P  G  + K+        ++      T 
Sbjct: 96  ILIMGLIAFVIFKLMRGMLGAKQGTMNQHRQQPAFGGNASKFEQPNMQNFEQQPNSAGTG 155

Query: 63  GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
           G G K D    I   +P G                FD   F+N +R  Y  +  ++   +
Sbjct: 156 GFGSKTD----IPHNYPPG----------------FDQAAFVNGSREHYRTLQGAWNHNQ 195

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
           +H IE+ V   ++    D L   ++     + + V   D +I+ A  + N   ++++  G
Sbjct: 196 LHTIEEYVSPSLF----DDLKAERAKLDGEQHTDVMYVDAEIVRADYDANKAQLSLQFSG 251

Query: 183 QFISASYDKDNLL-ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           ++      +D++  +  D      + DIW   R++   N  W+++  +
Sbjct: 252 RY------RDSVEGVEED------IQDIWHLERDLTVPNAPWLIVGIQ 287


>gi|315497202|ref|YP_004086006.1| import inner membrane translocase subunit tim44 [Asticcacaulis
           excentricus CB 48]
 gi|315415214|gb|ADU11855.1| import inner membrane translocase subunit Tim44 [Asticcacaulis
           excentricus CB 48]
          Length = 207

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 89/217 (41%), Gaps = 26/217 (11%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG---NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
           +L+ A I   V  QL  VLG++ G    +KP         V    D  G       + K 
Sbjct: 5   LLILALIAVVVLFQLYNVLGRRVGFKAEDKPV--------VPKTEDSEGPFNRPGQEPKA 56

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
                    P   R+   +  + S    F+  +F+ +AR +YE IV +F  G++  ++  
Sbjct: 57  Q--------PERLRMPN-LDALKSRDAHFNEINFVEKAREAYEQIVLAFNRGEIEGLKDR 107

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           +   VY  F  ++  R   +K +  S V      +    ++++   + +R + + +    
Sbjct: 108 LSESVYGVFAKAIEAR-GEQKAMTVSFVESPKTDLDQIDLKDDRASVRVRFLSELLYEMA 166

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNI-PPSNPNWVL 225
           D D        +   +  + WTF +N+  P+NP W+L
Sbjct: 167 DPDG---GEPKKAHRRTAEFWTFQKNLKSPTNP-WIL 199


>gi|302773644|ref|XP_002970239.1| hypothetical protein SELMODRAFT_441105 [Selaginella moellendorffii]
 gi|300161755|gb|EFJ28369.1| hypothetical protein SELMODRAFT_441105 [Selaginella moellendorffii]
          Length = 257

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 9/141 (6%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKS 154
           +  ++ K F  EA + Y+ I      G +  + +LV    +    + +  R++    V  
Sbjct: 112 HKGYNQKVFYREATDLYKEINKLSAAGDLGKLRRLVTEHFFSVIKNQIKQRQAAYSRVHW 171

Query: 155 SLVG-IDDMKIINASI--------EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
            +VG I  M+ +   +        +   V IT+RI    I A+YDK+N +I  D E    
Sbjct: 172 EMVGQIKLMRTLQGRLIGIDRKDLDNAFVQITLRIQSNQIFAAYDKNNNIIKGDLEKPLL 231

Query: 206 VIDIWTFVRNIPPSNPNWVLI 226
           V DIW F +++   +  W L 
Sbjct: 232 VEDIWIFEKHLTRPDSTWRLC 252


>gi|302793266|ref|XP_002978398.1| hypothetical protein SELMODRAFT_418250 [Selaginella moellendorffii]
 gi|300153747|gb|EFJ20384.1| hypothetical protein SELMODRAFT_418250 [Selaginella moellendorffii]
          Length = 260

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 9/141 (6%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKS 154
           +  ++ K F  EA + Y+ I      G +  + +LV    +    + +  R++    V  
Sbjct: 115 HKGYNQKVFYREATDLYKEINKLSAAGDLGKLRRLVTEHFFSVIKNQIKQRQAAYSRVHW 174

Query: 155 SLVG-IDDMKIINASI--------EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
            +VG I  M+ +   +        +   V IT+RI    I A+YDK+N +I  D E    
Sbjct: 175 EMVGQIKLMRTLQGRLIGIDRKDLDNAFVQITLRIQSNQIFAAYDKNNNIIKGDLEKPLL 234

Query: 206 VIDIWTFVRNIPPSNPNWVLI 226
           V DIW F +++   +  W L 
Sbjct: 235 VEDIWIFEKHLTRPDSTWRLC 255


>gi|37679309|ref|NP_933918.1| hypothetical protein VV1125 [Vibrio vulnificus YJ016]
 gi|320156948|ref|YP_004189327.1| hypothetical protein VVM_03684 [Vibrio vulnificus MO6-24/O]
 gi|326424146|ref|NP_761953.2| hypothetical protein VV1_3163 [Vibrio vulnificus CMCP6]
 gi|37198052|dbj|BAC93889.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
 gi|319932260|gb|ADV87124.1| hypothetical protein VVMO6_02102 [Vibrio vulnificus MO6-24/O]
 gi|319999531|gb|AAO11480.2| hypothetical protein VV1_3163 [Vibrio vulnificus CMCP6]
          Length = 289

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 46/228 (20%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGK---------YVFSKRDERGIIT 61
           IL+   I F +F  +RG+L  K G  N+      F G+         + F +        
Sbjct: 96  ILIIGLIAFVIFKLMRGLLASKQGSMNQHRQQPAFGGQAPKFEQSNVHNFEQSPNTPTGG 155

Query: 62  LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
            G G + D    +   +P G                FD   F+N AR  Y  +  ++   
Sbjct: 156 FGFGAQSD----VPHNYPPG----------------FDQVAFVNGAREHYRILQGAWNHN 195

Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
           ++  IE+ V   +++D    L   ++     + + V   D +I+ A  + +T +++++  
Sbjct: 196 QLETIEEYVSPSLFED----LKAERAKLDGEQHTDVMYVDAQIVRADYDASTAHLSLQFS 251

Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           G++  A        I  D      + DIW   R++   N  W+++  +
Sbjct: 252 GRYRDAVEG-----IEED------ITDIWHLERDLTAPNAPWMIVGIQ 288


>gi|86148689|ref|ZP_01066968.1| hypothetical protein MED222_20209 [Vibrio sp. MED222]
 gi|218710150|ref|YP_002417771.1| hypothetical protein VS_2180 [Vibrio splendidus LGP32]
 gi|85833536|gb|EAQ51715.1| hypothetical protein MED222_20209 [Vibrio sp. MED222]
 gi|218323169|emb|CAV19346.1| hypothetical protein VS_2180 [Vibrio splendidus LGP32]
          Length = 307

 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 29/224 (12%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGN--------EKP-FSGFFSGKYVFSKRDERGIITLG 63
           IL+   I F  F  LRG+LG K G+        ++P F G    K+   K+ +  +    
Sbjct: 99  ILIMGLIAFLAFKFLRGMLGAKQGSMNQQNARGQQPAFGGMGQNKFEQPKQ-QPNVHNFE 157

Query: 64  KGKKKDNLDSINELFPIGTRLNKVMRDIVSVY-TDFDPKDFLNEARNSYEAIVDSFFEGK 122
           + + +    S N     G        D+   Y   FD   F+N +R  Y  +  ++   +
Sbjct: 158 QAQPQSQPHSQNSAGGFGF---GAQSDVPHNYPPGFDQAAFINGSREHYRTLQGAWNHNE 214

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
           ++ IE+ V   +++D    L   ++     + + V   D +I+ A  + +   ++++  G
Sbjct: 215 LNTIEEYVSPSLFED----LKAERNKLDGDQHTDVMYVDAEIVRADHDGSKAQLSLQFSG 270

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226
           ++   +       I  D      + DIW   R++   N  W+++
Sbjct: 271 RYRDTADG-----IEED------ITDIWHLERDLTTQNAPWLIV 303


>gi|261253352|ref|ZP_05945925.1| hypothetical protein VIA_003377 [Vibrio orientalis CIP 102891]
 gi|260936743|gb|EEX92732.1| hypothetical protein VIA_003377 [Vibrio orientalis CIP 102891]
          Length = 292

 Score = 45.1 bits (105), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 85/217 (39%), Gaps = 29/217 (13%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           IL+   I F +F  +R +LG K G  N++     F G     K ++  +          N
Sbjct: 98  ILIMGLIAFVIFKLMRSMLGAKQGSMNQQRQQPAFGGSA--PKFEQPNV---------HN 146

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTD-FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
            +        G        D+   Y   FD   F+N +R  Y  +  ++   ++H IE+ 
Sbjct: 147 FEQPQNAPQGGGFGFGAQTDVPHNYPPGFDQSAFINGSREHYRILQGAWNHNQLHTIEEY 206

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V   +Y+D    L   ++     + + V   D +I+ A  +     ++++  G++  A  
Sbjct: 207 VSPSLYED----LKAERAKLNGEQHTDVMYVDAEIVRADHDATKAQLSLQFSGRYRDAVE 262

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226
                 I  D      + DIW   R++   N  W+++
Sbjct: 263 G-----IEED------ITDIWHLERDLTTPNAPWLIV 288


>gi|258626499|ref|ZP_05721339.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258581210|gb|EEW06119.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 290

 Score = 44.3 bits (103), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/224 (19%), Positives = 89/224 (39%), Gaps = 38/224 (16%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65
           IL+   I F +F  +RG+L  K G  N+      +SG  +  F + +        ++G G
Sbjct: 97  ILIMGLIAFVIFKLMRGLLASKQGSMNQSQQQPAYSGMNRTSFEQPNVHNFEQPQSMGGG 156

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                   +   +P+G                FD   F+N AR  Y  +  ++   ++  
Sbjct: 157 FGSAAQSDVPHNYPVG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 200

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           I + V   +++D    L   ++N +  + + V   D +I+ A  + N   ++++  G++ 
Sbjct: 201 IREYVSPSLFED----LQAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYR 256

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            A              I   + D+W   R++   N  W+++  +
Sbjct: 257 DAVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 289


>gi|28897713|ref|NP_797318.1| hypothetical protein VP0939 [Vibrio parahaemolyticus RIMD 2210633]
 gi|28805926|dbj|BAC59202.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|328473305|gb|EGF44153.1| hypothetical protein VP10329_21550 [Vibrio parahaemolyticus 10329]
          Length = 290

 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 90/220 (40%), Gaps = 29/220 (13%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           IL+   I F +F  +RG+LG K G  N++     F G    SK ++  +          N
Sbjct: 96  ILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNA--SKFEQPNM---------QN 144

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
            +        G        D+   Y   FD   F+N +R  Y  +  ++   ++  IE+ 
Sbjct: 145 FEQQPNTNAGGFTGFGAQTDVPHNYPPGFDQAAFINGSREHYRILQGAWNHNQLDTIEEY 204

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V   +++D    L   ++  +  + + V   D +I+ A  + N   ++++  G++  A+ 
Sbjct: 205 VSPSLFED----LKAERAKLEGEQHTDVMYVDAEIVRAEYDANKAQLSLQFSGRYRDAAE 260

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                 +  D E      DIW   R++   N  W+++  +
Sbjct: 261 G-----VEEDIE------DIWHLERDLTVPNAPWLIVGIQ 289


>gi|260878333|ref|ZP_05890688.1| import inner membrane translocase, subunit Tim44 [Vibrio
           parahaemolyticus AN-5034]
 gi|308092753|gb|EFO42448.1| import inner membrane translocase, subunit Tim44 [Vibrio
           parahaemolyticus AN-5034]
          Length = 287

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 89/218 (40%), Gaps = 29/218 (13%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           IL+   I F +F  +RG+LG K G  N++     F G    SK ++  +          N
Sbjct: 96  ILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNA--SKFEQPNM---------QN 144

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
            +        G        D+   Y   FD   F+N +R  Y  +  ++   ++  IE+ 
Sbjct: 145 FEQQPNTNAGGFTGFGAQTDVPHNYPPGFDQAAFINGSREHYRILQGAWNHNQLDTIEEY 204

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V   +++D    L   ++  +  + + V   D +I+ A  + N   ++++  G++  A+ 
Sbjct: 205 VSPSLFED----LKAERAKLEGEQHTDVMYVDAEIVRAEYDANKAQLSLQFSGRYRDAAE 260

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
                 +  D E      DIW   R++   N  W+++ 
Sbjct: 261 G-----VEEDIE------DIWHLERDLTVPNAPWLIVG 287


>gi|61806584|ref|NP_001013525.1| mitochondrial import inner membrane translocase subunit TIM44
           [Danio rerio]
 gi|60649493|gb|AAH90431.1| Translocase of inner mitochondrial membrane 44 homolog (yeast)
           [Danio rerio]
 gi|182891522|gb|AAI64677.1| Timm44 protein [Danio rerio]
          Length = 452

 Score = 43.9 bits (102), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 38/189 (20%), Positives = 78/189 (41%), Gaps = 5/189 (2%)

Query: 41  FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100
           F+ FF  K  + + D    I   +       D I  LF   T +++V+ +I+ V   FD 
Sbjct: 255 FNRFFEMKMKYDESD-NAFIRASRAVTDKMTDIIGGLFS-KTEMSEVLTEILKVDPTFDK 312

Query: 101 KDFLNEA-RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159
             FL +  ++    I+++  +G++  ++       Y      +   K+      S ++ I
Sbjct: 313 DSFLKQCEKDIIPNILEAMIQGELDVLKDWCYEATYSQLAHPIQQAKAMGLQFHSKILDI 372

Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
           D++ +    + E    + I    Q +    +    ++  DPE   +++ +W   R+    
Sbjct: 373 DNIDLAMGKMMEQGPVLIITFQAQLVMVIRNVKGEVVEGDPEKVLRMMYVWALCRDQEEL 432

Query: 220 NPN--WVLI 226
           NPN  W L+
Sbjct: 433 NPNAAWRLL 441


>gi|262166075|ref|ZP_06033812.1| hypothetical protein VMA_002525 [Vibrio mimicus VM223]
 gi|262025791|gb|EEY44459.1| hypothetical protein VMA_002525 [Vibrio mimicus VM223]
          Length = 290

 Score = 43.5 bits (101), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 38/224 (16%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65
           IL+   I F +F  +RG+L  K G  N+      +SG  +  F + +        ++G G
Sbjct: 97  ILIMGLIAFVIFKLMRGLLASKQGSMNQSQQQPAYSGMNRTSFEQPNVHNFEQPQSMGGG 156

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                   +   +P G                FD   F+N AR  Y  +  ++   ++  
Sbjct: 157 FGSAAQSDVPHNYPAG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 200

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           I + V   +++D    L   ++N +  + + V   D +I+ A  + N   ++++  G++ 
Sbjct: 201 IREYVSPSLFED----LQAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYR 256

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            A              I   + D+W   R++   N  W+++  +
Sbjct: 257 DAVEG-----------IEENIEDVWHLERDLTVQNAPWLIVGIQ 289


>gi|148907785|gb|ABR17018.1| unknown [Picea sitchensis]
          Length = 190

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 17/172 (9%)

Query: 64  KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
           +G K+   D I+E F     + K+ +      T +    F  EA   Y+ I     +G  
Sbjct: 22  RGWKRSKEDLISE-FKTAYAIAKLRK-----LTKYSKPKFYEEAIQLYKEINSHLAQGDR 75

Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL----VGIDDMKIINASIEENT-----V 174
            ++ +LV   +Y  F   +  R++    V   +    V I  ++    ++++N      V
Sbjct: 76  TSLRQLVTENMYTIFKREIKQRETTWSRVHWEMIEPTVRIRTLRARMIAVDKNNLDNAFV 135

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226
            IT+ I+     A+YD   +LI+ D ++   V DIW F R++      W L 
Sbjct: 136 QITLEILTNQKFAAYDLKGILITEDSKVL--VEDIWVFERSLFQPGARWRLC 185


>gi|258621272|ref|ZP_05716306.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|262171047|ref|ZP_06038725.1| hypothetical protein VII_001862 [Vibrio mimicus MB-451]
 gi|258586660|gb|EEW11375.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|261892123|gb|EEY38109.1| hypothetical protein VII_001862 [Vibrio mimicus MB-451]
          Length = 290

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 38/224 (16%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65
           IL+   I F +F  +RG+L  K G  N+      +SG  +  F + +        ++G G
Sbjct: 97  ILIMGLIAFVIFKLMRGLLASKQGSMNQSQQQPAYSGMNRTSFEQPNVHNFEQPQSMGGG 156

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                   +   +P G                FD   F+N AR  Y  +  ++   ++  
Sbjct: 157 FGSAAQSDVPHNYPAG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 200

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           I + V   +++D    L   ++N +  + + V   D +I+ A  + N   ++++  G++ 
Sbjct: 201 IREYVSPSLFED----LQAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYR 256

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            A              I   + D+W   R++   N  W+++  +
Sbjct: 257 DAVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 289


>gi|269965560|ref|ZP_06179674.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269829785|gb|EEZ84020.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 290

 Score = 42.7 bits (99), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 29/217 (13%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           IL+   I F +F  +RG+LG K G  N+      F G    SK ++  +          N
Sbjct: 96  ILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNA--SKFEQPNM---------QN 144

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTD-FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
            +        G        D+   Y   FD   F+N +R  Y  +  ++   ++  IE+ 
Sbjct: 145 FEQQPNTNNGGFGGFGAQTDVPHNYPPGFDQAAFINGSREHYRILQGAWNHNQLETIEEY 204

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V   +++D    L   ++     + + V   D +I+ A  + N   ++++  G++     
Sbjct: 205 VSPSLFED----LKAERAKLDGEQHTDVMYVDAEIVRADYDANKAQLSLQFSGRY----- 255

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226
            +D +    +     ++ DIW   R++   N  W+++
Sbjct: 256 -RDTVEGVEE-----EIEDIWHLERDLTAPNAPWLIV 286


>gi|148977909|ref|ZP_01814462.1| hypothetical protein VSWAT3_01775 [Vibrionales bacterium SWAT-3]
 gi|145962855|gb|EDK28127.1| hypothetical protein VSWAT3_01775 [Vibrionales bacterium SWAT-3]
          Length = 304

 Score = 42.4 bits (98), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 43/229 (18%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT----LGKGK-- 66
           IL+   I F  F  LRG+LG K G+              ++++ RG       +G+ K  
Sbjct: 100 ILIMGLIAFLAFKFLRGMLGAKQGS-------------MNQQNARGQQPAFGGMGQNKFE 146

Query: 67  ---KKDNLDSINELFPIGTRLNKV-----MRDIVSVYT-DFDPKDFLNEARNSYEAIVDS 117
              ++ N+ +  +  P               D+   Y   FD   F+N +R  Y  +  +
Sbjct: 147 QPTQQPNVHNFEQAQPQSQGTAGGFGFGAQSDVPHNYPPGFDQAAFINGSREHYRTLQGA 206

Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
           +   ++  IE+ V   +++D    L   +S     + + V   D +I+ A  + +   ++
Sbjct: 207 WNHNELSTIEEYVSPSLFED----LKAERSKLDGDQHTDVMYVDAEIVRADHDGSKAQLS 262

Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226
           ++  G++  ++       I  D      + DIW   R++   N  W+++
Sbjct: 263 LQFSGRYRDSAEG-----IEED------ITDIWHLERDLTTDNAPWLIV 300


>gi|261210612|ref|ZP_05924905.1| hypothetical protein VCJ_000865 [Vibrio sp. RC341]
 gi|260840397|gb|EEX66968.1| hypothetical protein VCJ_000865 [Vibrio sp. RC341]
          Length = 289

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 44/224 (19%), Positives = 86/224 (38%), Gaps = 38/224 (16%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65
           IL+   I F +F  +RG+L  K G  N+      F G  +  F + +        ++G G
Sbjct: 96  ILIMGLIAFVIFKLMRGLLASKQGSMNQSQQQPAFGGMNRTPFEQPNVHNFEQPQSMGGG 155

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                   I   +P G                FD   F+N AR  Y  +  ++   ++  
Sbjct: 156 FGSAAQSDIPHNYPAG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 199

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           I + V   ++    D L   ++N +  + + V   D +I+ A  + N   ++++  G++ 
Sbjct: 200 IREYVSPSLF----DDLKAERANYEGEQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYR 255

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            A              I   + D+W   R++   N  W+++  +
Sbjct: 256 DAVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 288


>gi|117923796|ref|YP_864413.1| import inner membrane translocase, subunit Tim44 [Magnetococcus sp.
           MC-1]
 gi|117607552|gb|ABK43007.1| import inner membrane translocase, subunit Tim44 [Magnetococcus sp.
           MC-1]
          Length = 331

 Score = 42.4 bits (98), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 26/137 (18%), Positives = 60/137 (43%)

Query: 96  TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155
           ++FD   F++ A+  +E +  S+    +  ++ L+  ++ ++  +     ++N +     
Sbjct: 195 SNFDEFTFIDGAKRCFEMLQTSWSTFDMTTLQGLLTPQMMEEVENHARQLQANGQRDVVK 254

Query: 156 LVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRN 215
            V   +  ++ A  E+   Y+T+R     +    D    ++S D     +V + W F R 
Sbjct: 255 NVHFSEAALVEAWSEQGQDYLTVRFDVSLVEYVEDASGQVVSGDANHPQQVQEFWVFTRA 314

Query: 216 IPPSNPNWVLISTKLGE 232
               NPNW L + +  +
Sbjct: 315 QGARNPNWQLSAIQQAQ 331


>gi|239947276|ref|ZP_04699029.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921552|gb|EER21576.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 211

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 64/135 (47%), Gaps = 13/135 (9%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---------SKRDERGIITLG 63
           +L+FA I FF+  +L   LG  +  E+     + G+ V          S ++E+ I T  
Sbjct: 8   LLIFAVIAFFIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSTVKSNKEEKNIPTAQ 67

Query: 64  KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
             K   ++   + +  +   + +V   + S    FDP  F+N A+ +++ I+++ ++   
Sbjct: 68  DIKAFKDIIVEHNITAVVDGMEQVHNRLYS----FDPVKFINNAKTAFQMIIEAAYKKDT 123

Query: 124 HAIEKLVDSRVYQDF 138
             + +L+D R  ++F
Sbjct: 124 QELSELIDKRYLEEF 138


>gi|254507626|ref|ZP_05119759.1| import inner membrane translocase, subunit Tim44 [Vibrio
           parahaemolyticus 16]
 gi|219549513|gb|EED26505.1| import inner membrane translocase, subunit Tim44 [Vibrio
           parahaemolyticus 16]
          Length = 292

 Score = 42.4 bits (98), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 29/217 (13%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           IL+   I F +F  +RG+LG K G  N++     F G     K ++  +          N
Sbjct: 98  ILIIGLIAFVIFKLMRGMLGAKQGSMNQQRQQPAFGGSA--PKFEQPNV---------HN 146

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTD-FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
            +   +    G        D+   Y   FD   F+N +R  Y  +  ++   ++  IE+ 
Sbjct: 147 FEQPQQTGSQGGFGFGSQTDVPHNYPPGFDHAAFINGSREHYRILQGAWNHNQLETIEEY 206

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V   ++ D    L + ++  +  + + V   D +I+ A  + +   ++++  G++  A  
Sbjct: 207 VSPSLFAD----LKSERAKLEGEQHTDVMYVDAEIVRADYDASKAQLSLQFSGRYRDAVE 262

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226
                 I  D      + DIW   R++   N  W+++
Sbjct: 263 G-----IEED------IADIWHLERDLTVPNAPWLIV 288


>gi|67459060|ref|YP_246684.1| hypothetical protein RF_0668 [Rickettsia felis URRWXCal2]
 gi|67004593|gb|AAY61519.1| unknown [Rickettsia felis URRWXCal2]
          Length = 211

 Score = 42.4 bits (98), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 45/230 (19%), Positives = 94/230 (40%), Gaps = 49/230 (21%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---------SKRDERGIITLG 63
           +L+FA I F++  +L   LG  +  E+     + G+ V          S ++E+ I T  
Sbjct: 8   LLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSTVKSNKEEKNIPTAQ 67

Query: 64  KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
             K   ++   + +  +   + +V + + S    FDP  F+N A+ +++ I+++ ++   
Sbjct: 68  DIKAFKDIIVEHNITAVVDGMEQVHKHLYS----FDPIKFINNAKTAFQMIIEAAYKKDA 123

Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE-----NTVYITI 178
             + +L+D R  ++F           + +  S     D+  ++A   E     N ++I +
Sbjct: 124 KELSELIDKRYLEEF-----------EKITPSYGDFFDLSALSAKYSEIYMFGNNIFIKL 172

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDI---WTFVRNIPPSNPNWVL 225
              G+                  +  K+ D+   WTF RN      +W L
Sbjct: 173 LFQGK-----------------NVVDKIEDLKEEWTFTRNANTKEVDWFL 205


>gi|326678158|ref|XP_003201001.1| PREDICTED: mitochondrial import inner membrane translocase subunit
           TIM44-like [Danio rerio]
 gi|94734038|emb|CAK04039.1| novel protein containing a Tim44-like domain (zgc:110764) [Danio
           rerio]
          Length = 452

 Score = 42.4 bits (98), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 37/189 (19%), Positives = 78/189 (41%), Gaps = 5/189 (2%)

Query: 41  FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100
           F+ FF  K  + + D    I   +       D I  LF   T +++V+ +I+ V   FD 
Sbjct: 255 FNRFFEMKMKYDESD-NAFIRASRAVTDKMTDIIGGLFS-KTEMSEVLTEILKVDPSFDK 312

Query: 101 KDFLNEA-RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159
             FL +  ++    I+++  +G++  ++       Y      +   K+      S ++ I
Sbjct: 313 DSFLKQCEKDIIPNILEAMIQGELDVLKDWCYEATYSQLAHPIQQAKAMGLQFHSKILDI 372

Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
           D++ +    + E    + I    Q +    +    ++  DP+   +++ +W   R+    
Sbjct: 373 DNIDLAMGKMMEQGPVLIITFQAQLVMVIRNVKGEVVEGDPDKVLRMMYVWALCRDQEEL 432

Query: 220 NPN--WVLI 226
           NPN  W L+
Sbjct: 433 NPNAAWRLL 441


>gi|157803805|ref|YP_001492354.1| hypothetical protein A1E_03170 [Rickettsia canadensis str. McKiel]
 gi|157785068|gb|ABV73569.1| hypothetical protein A1E_03170 [Rickettsia canadensis str. McKiel]
          Length = 211

 Score = 42.0 bits (97), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 13/135 (9%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---------SKRDERGIITLG 63
           +L+FA I FF+  +L   LG     E+     + G+ V          S + E+ + T+ 
Sbjct: 8   LLIFALIAFFIINKLITTLGSTAEEEQTKQKSYFGEPVIKDVTYSAVKSNKAEKNLPTVE 67

Query: 64  KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
             K   ++     +  +   + +V + + S    FDP  F+N A+ +++ I+++ ++   
Sbjct: 68  DIKAFQDIIVEQNITAVVDGMEQVHKRLYS----FDPVKFINNAKTAFQMIIEAAYKKDT 123

Query: 124 HAIEKLVDSRVYQDF 138
             + +LVD R  ++F
Sbjct: 124 QELSELVDKRYLEEF 138


>gi|157964519|ref|YP_001499343.1| hypothetical protein RMA_0619 [Rickettsia massiliae MTU5]
 gi|157844295|gb|ABV84796.1| hypothetical protein RMA_0619 [Rickettsia massiliae MTU5]
          Length = 211

 Score = 42.0 bits (97), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 65/135 (48%), Gaps = 13/135 (9%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---------SKRDERGIITLG 63
           +L+FA ITF++  +L   LG  +  E+     + G+ +          S ++E+ I T  
Sbjct: 8   LLIFAVITFYIINKLITTLGSTSEEEQTNQKSYFGEPIIKDVTYSTVKSNKEEKNIPTTQ 67

Query: 64  KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
             K   ++   + +  +   + +V + + S    FDP  F+N A+ +++ I+++ ++   
Sbjct: 68  DIKAFKDIIVEHNITAVVDGMEQVHKRLYS----FDPVKFINNAKTAFQMIIEAAYKKDA 123

Query: 124 HAIEKLVDSRVYQDF 138
             + +L+D R   +F
Sbjct: 124 KELSELIDKRYLAEF 138


>gi|84387756|ref|ZP_00990772.1| hypothetical protein V12B01_05945 [Vibrio splendidus 12B01]
 gi|84377439|gb|EAP94306.1| hypothetical protein V12B01_05945 [Vibrio splendidus 12B01]
          Length = 302

 Score = 42.0 bits (97), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 44/229 (19%), Positives = 92/229 (40%), Gaps = 43/229 (18%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGN--------EKP-FSGFFSGKYVFSKRDERGIITLG 63
           IL+   I F  F  LRG+LG K G+        ++P F G    K+              
Sbjct: 98  ILIMGLIAFLAFKFLRGMLGAKQGSMNQQNARGQQPAFGGMGQNKFE------------- 144

Query: 64  KGKKKDNLDSINELFPIGTRLNKV-----MRDIVSVYT-DFDPKDFLNEARNSYEAIVDS 117
           + K++ N+ +  +  P               D+   Y   FD   F+N +R  Y  +  +
Sbjct: 145 QPKQQPNVHNFEQAQPQSQGAAGGFGFGAQSDVPHNYPPGFDQAAFINGSREHYRTLQGA 204

Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
           +   +++ IE+ V   +++D    L   ++     + + V   D +I+ A  + +   ++
Sbjct: 205 WNHNELNTIEEYVSPSLFED----LKAERNKLDGDQHTDVMYVDAEIVRADHDGSKAQLS 260

Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226
           ++  G++   +       +  D      + DIW   R++  +N  W+++
Sbjct: 261 LQFSGRYRDTADG-----VEED------ITDIWHLERDLTTNNAPWLIV 298


>gi|262404319|ref|ZP_06080874.1| hypothetical protein VOA_002310 [Vibrio sp. RC586]
 gi|262349351|gb|EEY98489.1| hypothetical protein VOA_002310 [Vibrio sp. RC586]
          Length = 290

 Score = 42.0 bits (97), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 43/224 (19%), Positives = 86/224 (38%), Gaps = 38/224 (16%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65
           IL+   I F +F  +RG+L  K G  N       +SG  +  F + +        ++G G
Sbjct: 97  ILIMGLIAFVIFKLMRGLLASKQGSMNHSQQQPAYSGMNRTSFEQPNVHNFEQPQSMGGG 156

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                   +   +P G                FD   F+N AR  Y  +  ++   ++  
Sbjct: 157 FGSTAQSDVPHNYPAG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 200

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           I + V   +++D    L   ++N    + + V   D +I+ A  + N   ++++  G++ 
Sbjct: 201 IREYVSPSLFED----LKAERANYAGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYR 256

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            A              I   + D+W   R++   N  W+++  +
Sbjct: 257 DAVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 289


>gi|59712270|ref|YP_205046.1| Tim44-like domain-contain protein [Vibrio fischeri ES114]
 gi|59480371|gb|AAW86158.1| Tim44-like domain family [Vibrio fischeri ES114]
          Length = 297

 Score = 42.0 bits (97), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 43/218 (19%), Positives = 87/218 (39%), Gaps = 20/218 (9%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+ A I F +F   R ++  K G+     G     Y   +  +    +    ++    D
Sbjct: 98  ILIMAGIAFILFKVFRSMMAAKAGSMNQRQG---AAYAGPQGQQDAQPSFRDNQQYFQAD 154

Query: 73  SINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
                 P G        D+   Y   FD + F+N +R  Y  +  ++   ++  I++ V 
Sbjct: 155 QATAQ-PTGGFGAASADDVPHNYPPGFDMQAFINGSREHYRILQGAWNHNQLETIQEYVS 213

Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
             +Y   ND +  R + E    + ++ + D +++ A  + N   ++++  G++  A    
Sbjct: 214 ISLY---NDLVQERATLEGEQHTDVMYV-DAEVVRADYDANRAQLSLQFSGRYRDAVEG- 268

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
               I  D      + DIW   R++   N  W++I  +
Sbjct: 269 ----IEED------ITDIWHLERDLTQPNAPWLIIGIQ 296


>gi|229586715|ref|YP_002845216.1| hypothetical protein RAF_ORF0564 [Rickettsia africae ESF-5]
 gi|228021765|gb|ACP53473.1| Unknown [Rickettsia africae ESF-5]
          Length = 211

 Score = 42.0 bits (97), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 65/135 (48%), Gaps = 13/135 (9%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---------SKRDERGIITLG 63
           +L+FA I F++  +L   LG  +  E+     + G+ V          S ++E+ I T  
Sbjct: 8   LLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSIVKSNKEEKNIPTAQ 67

Query: 64  KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
             K   ++   + +  +   + +V + + S    FDP  F+N A+ +++ I+++ ++   
Sbjct: 68  DIKAFKDIIVEHNITAVVDGMEQVHKRLYS----FDPVKFINNAKTAFQMIIEAAYKKDA 123

Query: 124 HAIEKLVDSRVYQDF 138
             + +L+D R  ++F
Sbjct: 124 KELSELIDKRYLEEF 138


>gi|15892527|ref|NP_360241.1| hypothetical protein RC0604 [Rickettsia conorii str. Malish 7]
 gi|15619688|gb|AAL03142.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 211

 Score = 42.0 bits (97), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 65/135 (48%), Gaps = 13/135 (9%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---------SKRDERGIITLG 63
           +L+FA I F++  +L   LG  +  E+     + G+ +          S ++E+ I T  
Sbjct: 8   LLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPIIKDVTYSIVKSNKEEKNIPTAQ 67

Query: 64  KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
             K   ++   + +  I   + +V + + S    FDP  F+N A+ +++ I+++ ++   
Sbjct: 68  DIKAFKDIIVEHNITAIVDGMEQVHKRLYS----FDPVKFINNAKTAFQMIIEAAYKKDA 123

Query: 124 HAIEKLVDSRVYQDF 138
             + +L+D R  ++F
Sbjct: 124 KELSELIDKRYLEEF 138


>gi|34580481|ref|ZP_00141961.1| hypothetical protein [Rickettsia sibirica 246]
 gi|157828477|ref|YP_001494719.1| hypothetical protein A1G_03400 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933195|ref|YP_001649984.1| hypothetical protein RrIowa_0720 [Rickettsia rickettsii str. Iowa]
 gi|28261866|gb|EAA25370.1| unknown [Rickettsia sibirica 246]
 gi|157800958|gb|ABV76211.1| hypothetical protein A1G_03400 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908282|gb|ABY72578.1| hypothetical protein RrIowa_0720 [Rickettsia rickettsii str. Iowa]
          Length = 211

 Score = 41.6 bits (96), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 65/135 (48%), Gaps = 13/135 (9%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---------SKRDERGIITLG 63
           +L+FA I F++  +L   LG  +  E+     + G+ V          S ++E+ I T  
Sbjct: 8   LLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSIVKSNKEEKNIPTAQ 67

Query: 64  KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
             K   ++   + +  +   + +V + + S    FDP  F+N A+ +++ I+++ ++   
Sbjct: 68  DIKAFKDIIVEHNITAVVDGMEQVHKRLYS----FDPVKFINNAKTAFQMIIEAAYKKDA 123

Query: 124 HAIEKLVDSRVYQDF 138
             + +L+D R  ++F
Sbjct: 124 KELSELIDKRYLEEF 138


>gi|53804400|ref|YP_113719.1| hypothetical protein MCA1256 [Methylococcus capsulatus str. Bath]
 gi|53758161|gb|AAU92452.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
          Length = 204

 Score = 41.6 bits (96), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 85/213 (39%), Gaps = 31/213 (14%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           +LLFA I FF++     +L  +    +P +G  +G Y  S+    G      G+   + D
Sbjct: 15  LLLFAGIGFFLYR----LLAARGSQPQPAAG--AGYYPHSENP--GGANPVSGRPAFDTD 66

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
            ++             +   S   DFD   FLN A+ +Y  +  ++ E  +  +  L   
Sbjct: 67  LLSR--------RGGAQPAQSQPADFDTTGFLNGAKAAYRQLQAAWDERDLGTLRALTTD 118

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
           +V+ +  D L  R S E++         ++  ++A I      + +R  G     +   D
Sbjct: 119 KVFAELQDQL--RASAERHST-------ELLRVDAEI------LEVRDRGDEREVAVLFD 163

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
             L  +  E    V ++W FVR+     P W L
Sbjct: 164 VTLREAPAEEAAVVHEVWHFVRSRSSRQPTWFL 196


>gi|197334926|ref|YP_002156484.1| import inner membrane translocase, subunit Tim44 [Vibrio fischeri
           MJ11]
 gi|197316416|gb|ACH65863.1| import inner membrane translocase, subunit Tim44 [Vibrio fischeri
           MJ11]
          Length = 297

 Score = 41.6 bits (96), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 43/218 (19%), Positives = 87/218 (39%), Gaps = 20/218 (9%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+ A I F +F   R ++  K G+     G     Y   +  +    +    ++    D
Sbjct: 98  ILIMAGIAFILFKVFRSMMAAKAGSMNQRQG---AAYAGPQGQQDAQPSFRDNQQYFQAD 154

Query: 73  SINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
                 P G        D+   Y   FD + F+N +R  Y  +  ++   ++  I++ V 
Sbjct: 155 QATTQ-PTGGFGAASADDVPHNYPPGFDMQSFINGSREHYRILQGAWNHNQLETIQEYVS 213

Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
             +Y   ND +  R + E    + ++ + D +++ A  + N   ++++  G++  A    
Sbjct: 214 ISLY---NDLVQERATLEGEQHTDVMYV-DAEVVRADHDANRAQLSLQFSGRYRDAVEG- 268

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
               I  D      + DIW   R++   N  W++I  +
Sbjct: 269 ----IEED------ITDIWHLERDLTQPNAPWLIIGIQ 296


>gi|323491921|ref|ZP_08097090.1| hypothetical protein VIBR0546_04127 [Vibrio brasiliensis LMG 20546]
 gi|323313779|gb|EGA66874.1| hypothetical protein VIBR0546_04127 [Vibrio brasiliensis LMG 20546]
          Length = 292

 Score = 41.6 bits (96), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 43/220 (19%), Positives = 90/220 (40%), Gaps = 35/220 (15%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGN-----EKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
           IL+   I F +F  +RG+LG K G+     ++P  G  + K+              +   
Sbjct: 98  ILIMGLIAFVIFKLMRGMLGSKQGSMNKNRQQPAFGGSAPKF--------------EQPN 143

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYTD-FDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
             N +        G        DI   Y   FD   F+N +R  Y  +  ++   ++  I
Sbjct: 144 VHNFEQPQSGAQGGGFGFGAQSDIPHNYPPGFDQTAFINGSREHYRILQGAWNHNQLETI 203

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
           E+ V   +++D    L + ++  +  + + V   D +I+ A  + +   ++++  G++  
Sbjct: 204 EEYVSPSLFED----LKSERAKLEGEQHTDVMYVDAEIVRADYDASKAQLSLQFSGRY-- 257

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226
               +D++       I   + DIW   R++   N  W+++
Sbjct: 258 ----RDSV-----EGIEENIEDIWHLERDLTTPNAPWLIV 288


>gi|262394794|ref|YP_003286648.1| hypothetical protein VEA_004023 [Vibrio sp. Ex25]
 gi|262338388|gb|ACY52183.1| hypothetical protein VEA_004023 [Vibrio sp. Ex25]
          Length = 290

 Score = 41.2 bits (95), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 44/220 (20%), Positives = 88/220 (40%), Gaps = 29/220 (13%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           IL+   I F +F  +RG+LG K G  N+      F G    SK ++  +          N
Sbjct: 96  ILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNA--SKFEQPNM---------QN 144

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTD-FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
            +        G        D+   Y   FD   F+N +R  Y  +  ++   ++  IE+ 
Sbjct: 145 FEQQPNTNNGGFGGFGAQTDVPHNYPPGFDQAAFINGSREHYRILQGAWNHNQLETIEEY 204

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V   +++D    L   ++     + + V   D +I+ A    N   ++++  G++     
Sbjct: 205 VSPSLFED----LKAERAKLDGEQHTDVMYVDAEIVRADYNANKAQLSLQFSGRY----- 255

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            +D +    +     ++ DIW   R++   N  W+++  +
Sbjct: 256 -RDTVEGVEE-----EIEDIWHLERDLTVPNAPWLIVGIQ 289


>gi|238650294|ref|YP_002916146.1| hypothetical protein RPR_00625 [Rickettsia peacockii str. Rustic]
 gi|238624392|gb|ACR47098.1| hypothetical protein RPR_00625 [Rickettsia peacockii str. Rustic]
          Length = 211

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 65/135 (48%), Gaps = 13/135 (9%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---------SKRDERGIITLG 63
           +L+FA I F++  +L   LG  +  E+     + G+ V          S ++E+ I T  
Sbjct: 8   LLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSIVKSNKEEKNIPTAQ 67

Query: 64  KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
             K   ++   + +  +   + +V + + S    FDP  F+N A+ +++ I+++ ++   
Sbjct: 68  DIKVFKDIIVEHNITAVVDGMEQVHKRLYS----FDPVKFINNAKTAFQMIIEAAYKKDA 123

Query: 124 HAIEKLVDSRVYQDF 138
             + +L+D R  ++F
Sbjct: 124 KELSELIDKRYLEEF 138


>gi|312882412|ref|ZP_07742153.1| hypothetical protein VIBC2010_18049 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369812|gb|EFP97323.1| hypothetical protein VIBC2010_18049 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 281

 Score = 41.2 bits (95), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 90/218 (41%), Gaps = 29/218 (13%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           IL+   I F +F  +R +LG K G  N+      F G    SK ++  +       K+  
Sbjct: 85  ILIMGIIAFVIFKLVRAMLGAKQGSLNQHRQQPAFGGSA--SKFEQPNVNQF----KEQQ 138

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
             + N+    G        D+   Y   FD   F+N +R  Y  +  ++   ++  IE+ 
Sbjct: 139 QPTTNQTGGFGF---SAQSDVPHNYPPGFDNAAFVNGSREHYRLLQGAWNHNQLDTIEEY 195

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V   ++    D L T ++     + + V   D +I+ A  + +   ++++  G++     
Sbjct: 196 VSQSLF----DDLKTERAKLSGEQHTDVMFVDAEIVRADYDASKAQLSLQFSGRY----- 246

Query: 190 DKDNLL-ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226
            +D +  I  D      + DIW   R++   N  W+++
Sbjct: 247 -RDTVEGIEED------ITDIWHLERDLTTPNAPWLIV 277


>gi|25009742|gb|AAN71045.1| AT09326p [Drosophila melanogaster]
 gi|40882559|gb|AAR96191.1| AT24717p [Drosophila melanogaster]
          Length = 459

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ M ++V +   FD KDFL +        I++S   G +  ++       +    +
Sbjct: 301 TELSETMTELVKIDPSFDQKDFLRDCETDIIPNILESIVRGDLEILKDWCFESTFNIIAN 360

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K     + S ++ I+++++    + E    + I    Q I    D+ + ++  DP
Sbjct: 361 PIKEAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKSQVVEGDP 420

Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226
           E   +V  +W   R+    NP   W L+
Sbjct: 421 EKVMRVHYVWVLCRDRNELNPKAAWRLM 448


>gi|260776293|ref|ZP_05885188.1| hypothetical protein VIC_001677 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607516|gb|EEX33781.1| hypothetical protein VIC_001677 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 292

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/220 (19%), Positives = 89/220 (40%), Gaps = 29/220 (13%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           IL+   + F +F  +RG+LG K G  N++     F G     K ++  +          N
Sbjct: 98  ILIMGLVAFIIFKLMRGLLGSKQGSMNQQRQQPAFGGSA--PKFEQPNV---------HN 146

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTD-FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
            +   +    G        DI   Y   FD   F+N +R  Y  +  ++   ++  IE+ 
Sbjct: 147 FEQQPQSGSQGGFGFGAQSDIPHNYPPGFDKVAFINGSREHYRTLQGAWNHNQLDTIEEY 206

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V   +++D    L   ++  +  + + V   D +I+ A  + +   ++++  G++  A  
Sbjct: 207 VSPSLFED----LKAERAKLEGEQHTDVMYVDAEIVRADYDASKAQLSLQFSGRYRDAVE 262

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           + +             + DIW   R++   N  W+++  +
Sbjct: 263 NVEE-----------NIEDIWHLERDLTVPNAPWLIVGIQ 291


>gi|24648138|ref|NP_650786.2| CG11779, isoform A [Drosophila melanogaster]
 gi|78706780|ref|NP_001027193.1| CG11779, isoform D [Drosophila melanogaster]
 gi|7300484|gb|AAF55639.1| CG11779, isoform A [Drosophila melanogaster]
 gi|71854566|gb|AAZ52532.1| CG11779, isoform D [Drosophila melanogaster]
          Length = 459

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ M ++V +   FD KDFL +        I++S   G +  ++       +    +
Sbjct: 301 TELSETMTELVKIDPSFDQKDFLRDCETDIIPNILESIVRGDLEILKDWCFESTFNIIAN 360

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K     + S ++ I+++++    + E    + I    Q I    D+ + ++  DP
Sbjct: 361 PIKEAKKAGVYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKSQVVEGDP 420

Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226
           E   +V  +W   R+    NP   W L+
Sbjct: 421 EKVMRVHYVWVLCRDRNELNPKAAWRLM 448


>gi|323499402|ref|ZP_08104378.1| hypothetical protein VISI1226_21579 [Vibrio sinaloensis DSM 21326]
 gi|323315587|gb|EGA68622.1| hypothetical protein VISI1226_21579 [Vibrio sinaloensis DSM 21326]
          Length = 292

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 43/225 (19%), Positives = 86/225 (38%), Gaps = 39/225 (17%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYV--FSKRD----ERGIITLGK 64
           IL+   I F +F  +RG+LG K G  N+      F G+    F + +    E+       
Sbjct: 98  ILIIGLIAFLIFKLMRGMLGAKQGSMNQHRQQPAFGGQSAPKFEQPNVHNFEQPQTGSQG 157

Query: 65  GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
           G        +   +P G                FD   F+N +R  Y  +  ++   ++ 
Sbjct: 158 GFGFGGQTDVPHNYPPG----------------FDHAAFINGSREHYRILQGAWNHNQLE 201

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
            IE+ V   +Y+D    L   ++     + + V   D +I+ A  + +   ++++  G++
Sbjct: 202 TIEEYVSPSLYED----LKAERAKLDGEQHTDVMYVDAEIVRADYDASKAQLSLQFSGRY 257

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
             A    +             + DIW   R++   N  W+++  +
Sbjct: 258 RDAVEGVEE-----------NIEDIWHLERDLTTPNAPWLIVGIQ 291


>gi|269961023|ref|ZP_06175392.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834242|gb|EEZ88332.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 303

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 17/178 (9%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           IL+   I F +F  +RG+LG K G  N+      F G    SK ++  +    +     N
Sbjct: 108 ILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNA--SKFEQPNMQNFEQQPNNTN 165

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTD-FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
                              DI   Y   FD   F+N +R  Y  +  ++   ++H IE+ 
Sbjct: 166 AGG--------FGGFGAQTDIPHNYPPGFDQAAFINGSREHYRILQGAWNHNQLHTIEEY 217

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
           V   +++D    L   ++     + + V   D +I+ A  + N   ++++  G++  A
Sbjct: 218 VSPSLFED----LKAERAKLDGEQHTDVMYVDAEIVRADYDANKAQLSLQFSGRYRDA 271


>gi|195497862|ref|XP_002096280.1| GE25149 [Drosophila yakuba]
 gi|194182381|gb|EDW95992.1| GE25149 [Drosophila yakuba]
          Length = 459

 Score = 40.8 bits (94), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ M ++V +   FD KDFL +        I++S   G +  ++       +    +
Sbjct: 301 TELSETMTELVKIDPSFDQKDFLRDCETDIIPNILESIVRGDLEILKDWCFESTFNIIAN 360

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K     + S ++ I+++++    + E    + I    Q I    D+ + ++  DP
Sbjct: 361 PIKEAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKSQVVEGDP 420

Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226
           E   +V  +W   R+    NP   W L+
Sbjct: 421 EKVMRVHYVWVLCRDRNELNPKAAWRLM 448


>gi|229521878|ref|ZP_04411295.1| hypothetical protein VIF_002420 [Vibrio cholerae TM 11079-80]
 gi|229340803|gb|EEO05808.1| hypothetical protein VIF_002420 [Vibrio cholerae TM 11079-80]
          Length = 291

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 42/224 (18%), Positives = 87/224 (38%), Gaps = 38/224 (16%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65
           IL+   I F +F  +R  L  K G  N+      +SG  +  F + +        ++G G
Sbjct: 98  ILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQPQSMGGG 157

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                   +   +P+G                FD   F+N AR  Y  +  ++   ++  
Sbjct: 158 FGSAAQSDVPHNYPVG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 201

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           I + V   +++D    L   ++N +  + + V   D +I+ A  + N   ++++  G++ 
Sbjct: 202 IREYVSPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYR 257

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            A              I   + D+W   R++   N  W+++  +
Sbjct: 258 DAVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 290


>gi|195108009|ref|XP_001998585.1| GI24055 [Drosophila mojavensis]
 gi|193915179|gb|EDW14046.1| GI24055 [Drosophila mojavensis]
          Length = 452

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 11/152 (7%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEAR-----NSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136
           T L++ M ++V +  +FD K FL++       N  EAIV     G +  ++       Y 
Sbjct: 294 TELSETMTELVKIDPNFDQKQFLHDCEKDIIPNVLEAIV----RGDLEILKDWCFESTYN 349

Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196
                ++  K     + S ++ I+++++    + E    + I    Q I    D+   ++
Sbjct: 350 IIATPITQAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKGQVV 409

Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPN--WVLI 226
             DPE   +V  +W   R+    NP   W L+
Sbjct: 410 EGDPEKVMRVHYVWVLCRDRNELNPKAAWRLM 441


>gi|195353703|ref|XP_002043343.1| GM10044 [Drosophila sechellia]
 gi|194127457|gb|EDW49500.1| GM10044 [Drosophila sechellia]
          Length = 458

 Score = 40.4 bits (93), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ M ++V +   FD KDFL +        I++S   G +  ++       +    +
Sbjct: 300 TELSETMTELVKIDPSFDQKDFLRDCETDIIPNILESIVRGDLEILKDWCFESTFNIIAN 359

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K     + S ++ I+++++    + E    + I    Q I    D+ + ++  DP
Sbjct: 360 PIKEAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKSQVVEGDP 419

Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226
           E   +V  +W   R+    NP   W L+
Sbjct: 420 EKVMRVHYVWVLCRDRNELNPKAAWRLM 447


>gi|24648140|ref|NP_732403.1| CG11779, isoform B [Drosophila melanogaster]
 gi|7300485|gb|AAF55640.1| CG11779, isoform B [Drosophila melanogaster]
          Length = 428

 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ M ++V +   FD KDFL +        I++S   G +  ++       +    +
Sbjct: 270 TELSETMTELVKIDPSFDQKDFLRDCETDIIPNILESIVRGDLEILKDWCFESTFNIIAN 329

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K     + S ++ I+++++    + E    + I    Q I    D+ + ++  DP
Sbjct: 330 PIKEAKKAGVYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKSQVVEGDP 389

Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226
           E   +V  +W   R+    NP   W L+
Sbjct: 390 EKVMRVHYVWVLCRDRNELNPKAAWRLM 417


>gi|195569739|ref|XP_002102866.1| GD20131 [Drosophila simulans]
 gi|194198793|gb|EDX12369.1| GD20131 [Drosophila simulans]
          Length = 304

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ M ++V +   FD KDFL +        I++S   G +  ++       +    +
Sbjct: 146 TELSETMTELVKIDPSFDQKDFLRDCETDIIPNILESIVRGDLEILKDWCFESTFNIIAN 205

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K     + S ++ I+++++    + E    + I    Q I    D+ + ++  DP
Sbjct: 206 PIKEAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKSQVVEGDP 265

Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226
           E   +V  +W   R+    NP   W L+
Sbjct: 266 EKVMRVHYVWVLCRDRNELNPKAAWRLM 293


>gi|63093891|dbj|BAD98172.1| hypothetical protein [Drosophila parabipectinata]
          Length = 460

 Score = 40.4 bits (93), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ M ++V +   FD K+FL++        I+++   G +  ++       Y     
Sbjct: 302 TELSETMTELVKIDPSFDQKEFLHDCETDIIPNILEAIVRGDLEILKDWCFESTYNIIAT 361

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            ++  K     + S ++ I+++++    + E    + I    Q I    D+   ++  DP
Sbjct: 362 PITQAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKAQVVEGDP 421

Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226
           E   +V  +W   R+    NP   W L+
Sbjct: 422 EKVMRVHYVWVLCRDRNELNPKAAWRLM 449


>gi|194900032|ref|XP_001979561.1| GG16152 [Drosophila erecta]
 gi|190651264|gb|EDV48519.1| GG16152 [Drosophila erecta]
          Length = 459

 Score = 40.0 bits (92), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ M ++V +   FD KDFL +        I++S   G +  ++       +    +
Sbjct: 301 TELSETMTELVKIDPCFDQKDFLRDCETDIIPNILESIVRGDLEILKDWCFESTFNIIAN 360

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K     + S ++ I+++++    + E    + I    Q I    D+ + ++  DP
Sbjct: 361 PIKEAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKSQVVEGDP 420

Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226
           E   +V  +W   R+    NP   W L+
Sbjct: 421 EKVMRVHYVWVLCRDRNELNPKAAWRLM 448


>gi|153826379|ref|ZP_01979046.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|149739857|gb|EDM54048.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
          Length = 223

 Score = 40.0 bits (92), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 42/224 (18%), Positives = 86/224 (38%), Gaps = 38/224 (16%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65
           IL+   I F +F  +R  L  K G  N+      +SG  +  F + +        ++G G
Sbjct: 30  ILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQPQSMGGG 89

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                   +   +P G                FD   F+N AR  Y  +  ++   ++  
Sbjct: 90  FGSAAQSDVPHNYPAG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 133

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           I + V   +++D    L   ++N +  + + V   D +I+ A  + N   ++++  G++ 
Sbjct: 134 IREYVSPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYR 189

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            A              I   + D+W   R++   N  W+++  +
Sbjct: 190 DAVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 222


>gi|157825721|ref|YP_001493441.1| hypothetical protein A1C_03235 [Rickettsia akari str. Hartford]
 gi|157799679|gb|ABV74933.1| hypothetical protein A1C_03235 [Rickettsia akari str. Hartford]
          Length = 211

 Score = 40.0 bits (92), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 64/135 (47%), Gaps = 13/135 (9%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---------SKRDERGIITLG 63
           +L+FA I F++  +L   LG  +  E+     + G+ V          S ++E+ I T  
Sbjct: 8   LLIFAVIAFYIINKLITTLGSTSEEEQTRQKSYFGEPVIKDVTYSTVKSNKEEKNIPTAQ 67

Query: 64  KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
             K   ++   + +  +   + +V + + S    FDP  F+N A+ +++ I+++ ++   
Sbjct: 68  DIKAFKDIIVEHNITAVVDGMEQVHKRLYS----FDPVKFINNAKTAFQMIIEAAYKKDS 123

Query: 124 HAIEKLVDSRVYQDF 138
             + +L+D R  + F
Sbjct: 124 KELSELIDKRYLEAF 138


>gi|195452294|ref|XP_002073291.1| GK13236 [Drosophila willistoni]
 gi|194169376|gb|EDW84277.1| GK13236 [Drosophila willistoni]
          Length = 457

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 66/151 (43%), Gaps = 9/151 (5%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
           T L++ M ++V +  +FD K+FL++       I+ +  E  V     ++    ++     
Sbjct: 299 TELSETMTELVKIDPNFDQKEFLHDCETD---IIPNILEAIVRGDLDILKDWCFESTYSI 355

Query: 142 LSTRKSNEKN----VKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197
           +ST   N K     + S ++ I+++++    + E    + I    Q I    D+   ++ 
Sbjct: 356 ISTPILNAKKTGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKAQVVE 415

Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPN--WVLI 226
            DPE   +V  +W   R+    NP   W L+
Sbjct: 416 GDPEKVMRVHYVWVLCRDRNELNPKAAWRLM 446


>gi|153820281|ref|ZP_01972948.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126509172|gb|EAZ71766.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
          Length = 239

 Score = 40.0 bits (92), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 42/224 (18%), Positives = 86/224 (38%), Gaps = 38/224 (16%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65
           IL+   I F +F  +R  L  K G  N+      +SG  +  F + +        ++G G
Sbjct: 46  ILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQPQSMGGG 105

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                   +   +P G                FD   F+N AR  Y  +  ++   ++  
Sbjct: 106 FGSAAQSDVPHNYPAG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 149

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           I + V   +++D    L   ++N +  + + V   D +I+ A  + N   ++++  G++ 
Sbjct: 150 IREYVSPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYR 205

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            A              I   + D+W   R++   N  W+++  +
Sbjct: 206 DAVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 238


>gi|312385733|gb|EFR30159.1| hypothetical protein AND_00421 [Anopheles darlingi]
          Length = 340

 Score = 40.0 bits (92), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 90/202 (44%), Gaps = 19/202 (9%)

Query: 25  LQLRGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPI 80
           ++ RG+L  +   E+PF    +G     YV  + D R      +G K+    +I +L   
Sbjct: 83  MKERGILPPRPWLERPFYISCTGGVFEPYVPPEGDGRMSAISREGAKQ----AIEQL-EK 137

Query: 81  GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
            T+    +R I S   DFD +DF  +A++ Y     +  E   + + ++V  R Y +   
Sbjct: 138 KTKSMMAIRKIRSYDEDFDARDFATQAQDIYIQAHQTMCEKNKYKLREIVTERAYPELMH 197

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASI-----EENT-VYITIRIVGQFISASYDKDNL 194
           +++ +    + +KS    ++  ++++A       +EN    +T+R   Q + A YD+   
Sbjct: 198 NVADKTIRWQFIKS----LEPPRVVHARCTDVITKENIFAQVTVRFHSQQLLAIYDRFGR 253

Query: 195 LISSDPEIFGKVIDIWTFVRNI 216
           L+     I    ++   F +++
Sbjct: 254 LMHGSETIEKDCLEYVVFEKHL 275


>gi|195037110|ref|XP_001990008.1| GH18477 [Drosophila grimshawi]
 gi|193894204|gb|EDV93070.1| GH18477 [Drosophila grimshawi]
          Length = 452

 Score = 39.7 bits (91), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 11/152 (7%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEAR-----NSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136
           T L++ M ++V +  +FD K+FL++       N  EAIV     G +  ++       Y 
Sbjct: 294 TELSETMTELVKIDPNFDQKEFLHDCEKDIIPNVLEAIV----RGDLEILKDWCFESTYN 349

Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196
                ++  K +   + S ++ I+++++    + E    + I    Q I    D+   ++
Sbjct: 350 IIATPITQAKKSGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKAQVV 409

Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPN--WVLI 226
             DP+   +V  +W   R+    NP   W L+
Sbjct: 410 EGDPDKVMRVHYVWVLCRDRNELNPKAAWRLM 441


>gi|63093892|dbj|BAD98173.1| hypothetical protein [Drosophila parabipectinata]
          Length = 428

 Score = 39.7 bits (91), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ M ++V +   FD K+FL++        I+++   G +  ++       Y     
Sbjct: 270 TELSETMTELVKIDPSFDQKEFLHDCETDIIPNILEAIVRGDLEILKDWCFESTYNIIAT 329

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            ++  K     + S ++ I+++++    + E    + I    Q I    D+   ++  DP
Sbjct: 330 PITQAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKAQVVEGDP 389

Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226
           E   +V  +W   R+    NP   W L+
Sbjct: 390 EKVMRVHYVWVLCRDRNELNPKAAWRLM 417


>gi|327484501|gb|AEA78908.1| hypothetical protein VCLMA_A1705 [Vibrio cholerae LMA3894-4]
          Length = 291

 Score = 39.7 bits (91), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 42/224 (18%), Positives = 86/224 (38%), Gaps = 38/224 (16%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65
           IL+   I F +F  +R  L  K G  N+      +SG  +  F + +        ++G G
Sbjct: 98  ILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQPQSMGGG 157

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                   +   +P G                FD   F+N AR  Y  +  ++   ++  
Sbjct: 158 FGSAAQSDVPHNYPAG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 201

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           I + V   +++D    L   ++N +  + + V   D +I+ A  + N   ++++  G++ 
Sbjct: 202 IREYVSPSLFED----LKAERANYEGDQHTNVMYVDAEIVRADYDANRAQLSLQFSGRYR 257

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            A              I   + D+W   R++   N  W+++  +
Sbjct: 258 DAVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 290


>gi|229529012|ref|ZP_04418402.1| hypothetical protein VCG_002105 [Vibrio cholerae 12129(1)]
 gi|229332786|gb|EEN98272.1| hypothetical protein VCG_002105 [Vibrio cholerae 12129(1)]
          Length = 291

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 42/224 (18%), Positives = 86/224 (38%), Gaps = 38/224 (16%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65
           IL+   I F +F  +R  L  K G  N+      +SG  +  F + +        ++G G
Sbjct: 98  ILIMGLIAFVIFKLMRAFLASKQGSLNQSQQQPAYSGMNRTPFEQPNVHNFEQPQSMGGG 157

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                   +   +P G                FD   F+N AR  Y  +  ++   ++  
Sbjct: 158 FGSAAQSDVPHNYPAG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 201

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           I + V   +++D    L   ++N +  + + V   D +I+ A  + N   ++++  G++ 
Sbjct: 202 IREYVSPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYR 257

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            A              I   + D+W   R++   N  W+++  +
Sbjct: 258 DAVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 290


>gi|15641966|ref|NP_231598.1| hypothetical protein VC1964 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121590647|ref|ZP_01677981.1| hypothetical protein VC274080_2004 [Vibrio cholerae 2740-80]
 gi|121728634|ref|ZP_01681653.1| hypothetical protein VCV52_1929 [Vibrio cholerae V52]
 gi|147674189|ref|YP_001217491.1| hypothetical protein VC0395_A1550 [Vibrio cholerae O395]
 gi|153217402|ref|ZP_01951153.1| hypothetical protein A55_2172 [Vibrio cholerae 1587]
 gi|153801838|ref|ZP_01956424.1| hypothetical protein A51_B2032 [Vibrio cholerae MZO-3]
 gi|153822436|ref|ZP_01975103.1| hypothetical protein A5E_2262 [Vibrio cholerae B33]
 gi|229507945|ref|ZP_04397450.1| hypothetical protein VCF_003177 [Vibrio cholerae BX 330286]
 gi|229511819|ref|ZP_04401298.1| hypothetical protein VCE_003228 [Vibrio cholerae B33]
 gi|229518956|ref|ZP_04408399.1| hypothetical protein VCC_002983 [Vibrio cholerae RC9]
 gi|229523980|ref|ZP_04413385.1| hypothetical protein VCA_001559 [Vibrio cholerae bv. albensis
           VL426]
 gi|229607490|ref|YP_002878138.1| hypothetical protein VCD_002402 [Vibrio cholerae MJ-1236]
 gi|254226808|ref|ZP_04920380.1| hypothetical protein VCV51_1323 [Vibrio cholerae V51]
 gi|254849050|ref|ZP_05238400.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255745285|ref|ZP_05419234.1| hypothetical protein VCH_001631 [Vibrio cholera CIRS 101]
 gi|262156009|ref|ZP_06029129.1| hypothetical protein VIG_001228 [Vibrio cholerae INDRE 91/1]
 gi|262167916|ref|ZP_06035616.1| hypothetical protein VIJ_001090 [Vibrio cholerae RC27]
 gi|297579473|ref|ZP_06941401.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|9656503|gb|AAF95112.1| hypothetical protein VC_1964 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547490|gb|EAX57596.1| hypothetical protein VC274080_2004 [Vibrio cholerae 2740-80]
 gi|121629097|gb|EAX61542.1| hypothetical protein VCV52_1929 [Vibrio cholerae V52]
 gi|124113586|gb|EAY32406.1| hypothetical protein A55_2172 [Vibrio cholerae 1587]
 gi|124122610|gb|EAY41353.1| hypothetical protein A51_B2032 [Vibrio cholerae MZO-3]
 gi|125620655|gb|EAZ49017.1| hypothetical protein VCV51_1323 [Vibrio cholerae V51]
 gi|126520012|gb|EAZ77235.1| hypothetical protein A5E_2262 [Vibrio cholerae B33]
 gi|146316072|gb|ABQ20611.1| hypothetical protein VC0395_A1550 [Vibrio cholerae O395]
 gi|227013861|gb|ACP10071.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229337561|gb|EEO02578.1| hypothetical protein VCA_001559 [Vibrio cholerae bv. albensis
           VL426]
 gi|229343645|gb|EEO08620.1| hypothetical protein VCC_002983 [Vibrio cholerae RC9]
 gi|229351784|gb|EEO16725.1| hypothetical protein VCE_003228 [Vibrio cholerae B33]
 gi|229355450|gb|EEO20371.1| hypothetical protein VCF_003177 [Vibrio cholerae BX 330286]
 gi|229370145|gb|ACQ60568.1| hypothetical protein VCD_002402 [Vibrio cholerae MJ-1236]
 gi|254844755|gb|EET23169.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255737115|gb|EET92511.1| hypothetical protein VCH_001631 [Vibrio cholera CIRS 101]
 gi|262023643|gb|EEY42344.1| hypothetical protein VIJ_001090 [Vibrio cholerae RC27]
 gi|262030187|gb|EEY48831.1| hypothetical protein VIG_001228 [Vibrio cholerae INDRE 91/1]
 gi|297537067|gb|EFH75900.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 291

 Score = 39.7 bits (91), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 42/224 (18%), Positives = 86/224 (38%), Gaps = 38/224 (16%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65
           IL+   I F +F  +R  L  K G  N+      +SG  +  F + +        ++G G
Sbjct: 98  ILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQPQSMGGG 157

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                   +   +P G                FD   F+N AR  Y  +  ++   ++  
Sbjct: 158 FGSAAQSDVPHNYPAG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 201

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           I + V   +++D    L   ++N +  + + V   D +I+ A  + N   ++++  G++ 
Sbjct: 202 IREYVSPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYR 257

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            A              I   + D+W   R++   N  W+++  +
Sbjct: 258 DAVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 290


>gi|198450930|ref|XP_001358182.2| GA11194 [Drosophila pseudoobscura pseudoobscura]
 gi|198131257|gb|EAL27319.2| GA11194 [Drosophila pseudoobscura pseudoobscura]
          Length = 458

 Score = 39.7 bits (91), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 11/152 (7%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEAR-----NSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136
           T L++ M ++V +   FD K FL +       N  EAIV     G +  ++       Y 
Sbjct: 300 TELSETMTELVKIDPAFDQKQFLRDCETDIIPNVLEAIV----RGDLEILKDWCFESTYN 355

Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196
                ++  K +   + S ++ I+D+ +    + +    + I    Q I    D    ++
Sbjct: 356 VIATPITQAKKSGLYLDSKILDIEDIDLAMGKVMDQGPVLIITFQAQQIMCVRDPKGKVV 415

Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPN--WVLI 226
             DPE   +V  +W   R+    NP   W L+
Sbjct: 416 EGDPEKVMRVAYVWVLCRDREELNPKAAWRLL 447


>gi|307109340|gb|EFN57578.1| hypothetical protein CHLNCDRAFT_51139 [Chlorella variabilis]
          Length = 395

 Score = 39.3 bits (90), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 23/153 (15%)

Query: 83  RLNKVMRDIVSVYT---------DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
           R  + +    S+YT          F+   F  E+   Y  I     +G+  ++ +LV   
Sbjct: 136 RWQRTLSQFKSMYTLAKCKKYVPGFNRNAFKQESLELYRDICRLLAQGERGSLRQLVTPA 195

Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVG------IDDMKIINASI------EENT--VYITIR 179
           V+ D    L  R+        S         +D++  ++  +      +E +    +T+R
Sbjct: 196 VFSDMKRQLKQREDPAAGRACSGTSSGWEPTVDELTTVHGRLIMINPKDETSGFAQLTVR 255

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTF 212
           I      A+YDK   L++ DPE    V D W F
Sbjct: 256 IPSAQRFAAYDKAGKLVAGDPEQSIDVEDYWVF 288


>gi|254286893|ref|ZP_04961845.1| hypothetical protein A33_1875 [Vibrio cholerae AM-19226]
 gi|150423043|gb|EDN14992.1| hypothetical protein A33_1875 [Vibrio cholerae AM-19226]
          Length = 291

 Score = 39.3 bits (90), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 42/224 (18%), Positives = 86/224 (38%), Gaps = 38/224 (16%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65
           IL+   I F +F  +R  L  K G  N+      +SG  +  F + +        ++G G
Sbjct: 98  ILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQPQSMGGG 157

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                   +   +P G                FD   F+N AR  Y  +  ++   ++  
Sbjct: 158 FGSAAQSDVPHNYPAG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 201

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           I + V   +++D    L   ++N +  + + V   D +I+ A  + N   ++++  G++ 
Sbjct: 202 IREYVSPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYR 257

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            A              I   + D+W   R++   N  W+++  +
Sbjct: 258 DAVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 290


>gi|195143739|ref|XP_002012855.1| GL23705 [Drosophila persimilis]
 gi|194101798|gb|EDW23841.1| GL23705 [Drosophila persimilis]
          Length = 458

 Score = 39.3 bits (90), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 11/152 (7%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEAR-----NSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136
           T L++ M ++V +   FD K FL +       N  EAIV     G +  ++       Y 
Sbjct: 300 TELSETMTELVKIDPAFDQKQFLRDCETDIIPNVLEAIV----RGDLEILKDWCFESTYN 355

Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196
                ++  K +   + S ++ I+D+ +    + +    + I    Q I    D    ++
Sbjct: 356 IIATPITQAKKSGLYLDSKILDIEDIDLAMGKVMDQGPVLIITFQAQQIMCVRDPKGKVV 415

Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPN--WVLI 226
             DPE   +V  +W   R+    NP   W L+
Sbjct: 416 EGDPEKVMRVAYVWVLCRDREELNPKAAWRLL 447


>gi|260310504|gb|ACX36515.1| RE11601p [Drosophila melanogaster]
          Length = 428

 Score = 39.3 bits (90), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 62/148 (41%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ M ++V +   FD KDFL +        I++S   G +  ++       +    +
Sbjct: 270 TELSETMTELVKIDPSFDQKDFLRDCETDIIPNILESIVRGDLEILKDWCFESTFNIIAN 329

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K     + S ++ I+++++      E    + I    Q I    D+ + ++  DP
Sbjct: 330 PIKEAKKAGVYLDSKILDIENIELAMGKFMEQGPVLIITFQAQQIMCVRDQKSQVVEGDP 389

Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226
           E   +V  +W   R+    NP   W L+
Sbjct: 390 EKVMRVHYVWVLCRDRNELNPKAAWRLM 417


>gi|159041402|ref|YP_001540654.1| DNA primase, large subunit [Caldivirga maquilingensis IC-167]
 gi|157920237|gb|ABW01664.1| DNA primase, large subunit [Caldivirga maquilingensis IC-167]
          Length = 371

 Score = 38.9 bits (89), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 31/163 (19%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH------AIEKLV--- 130
           +G R++++M        +F+P   +N+A    EA++ +    K++      A+ + +   
Sbjct: 28  VGIRVSELMS------REFEP--IVNDALRMLEALIKNGEHAKLNFSVRDVAVSRYIAYV 79

Query: 131 -----DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
                D R+++   DS S   SN   VK S +   +++ I     E    + +RI+G   
Sbjct: 80  LTASMDKRIWRRIADSESKIFSN--MVKLSYLNKPNLECIKEVARE----LELRIIGVGE 133

Query: 186 SASYDKDNLLISSD---PEIFGKVIDIWTFVRNIPPSNPNWVL 225
            +S     L +      P+ F   + IW ++RN P ++PNWVL
Sbjct: 134 VSSLVAKRLNLQGQVLMPKPFMYAVSIWDYLRNSPRNDPNWVL 176


>gi|229515345|ref|ZP_04404805.1| hypothetical protein VCB_003002 [Vibrio cholerae TMA 21]
 gi|229348050|gb|EEO13009.1| hypothetical protein VCB_003002 [Vibrio cholerae TMA 21]
          Length = 291

 Score = 38.9 bits (89), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 42/223 (18%), Positives = 88/223 (39%), Gaps = 36/223 (16%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGIITLGKGKKK 68
           IL+   I F +F  +R  L  K G  N+      +SG  +  F               ++
Sbjct: 98  ILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPF---------------EQ 142

Query: 69  DNLDSINELFPIGTRLNKVMR-DIVSVY-TDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
            N+ +  +   +G       + D+   Y   FD   F+N AR  Y  +  ++   ++  I
Sbjct: 143 PNVHNFEQPQSVGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 202

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
            + V   +++D    L   ++N +  + + V   D +I+ A  + N   ++++  G++  
Sbjct: 203 REYVSPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 258

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           A              I   + D+W   R++   N  W+++  +
Sbjct: 259 AVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 290


>gi|47225693|emb|CAG08036.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 397

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 37/193 (19%), Positives = 78/193 (40%), Gaps = 5/193 (2%)

Query: 37  NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT 96
           N   F+ FF  K  + + D   +I   +       D I  LF   T +++V+ +I+ V  
Sbjct: 196 NNAVFNRFFEMKMKYDESD-NALIRASRAVTDKMSDLIGGLFS-KTEMSEVLTEILKVDP 253

Query: 97  DFDPKDFLNEA-RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155
            FD   FL    R+    I+++  +G++  ++       Y      +   K+      S 
Sbjct: 254 SFDKDSFLKLCERDIIPNILEAMIQGELDVLKDWCYEATYSQLAHPIQQAKATGLKFHSK 313

Query: 156 LVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRN 215
           ++ ID++ +    + +    + I    Q +    +    ++  DP+   +++ +W   R+
Sbjct: 314 ILDIDNIDLAMGKMMDQGPVLIITFQAQLVMVIRNPKGEVVEGDPDKVIRMMYVWALCRD 373

Query: 216 IPPSNP--NWVLI 226
               NP   W L+
Sbjct: 374 QEELNPYAAWRLL 386


>gi|330446574|ref|ZP_08310226.1| tim44-like domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490765|dbj|GAA04723.1| tim44-like domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 290

 Score = 38.9 bits (89), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 41/219 (18%), Positives = 92/219 (42%), Gaps = 30/219 (13%)

Query: 10  DFLIL-LFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
           D LI+ + AF+ F +F  +R   G   G+ + ++G    +    ++  R         + 
Sbjct: 96  DILIIGVIAFVLFKLFKAMRANKGTPMGHRESYAGNSPQQPQQPQQQYRQAAGAQSQPQN 155

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
              +S +   P     N            F+   FL+ +R+ Y  I  ++   ++  I +
Sbjct: 156 GGFESTDSDVPFNLPPN------------FNMNAFLSGSRDHYRIIQGAWNHNELEKIRE 203

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
            V   ++ D  ++   + S E++ +   V   D +++ A  + NT  ++I+  G++    
Sbjct: 204 YVSPALFADL-EAERAKLSGEQHTEVMYV---DAELVRADYDANTAQLSIKFSGRY---- 255

Query: 189 YDKDNLL-ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226
             KD++  +  D      + D+W   R++   N  W+++
Sbjct: 256 --KDSVEGVEED------ITDVWHLERDLKTPNAPWLIV 286


>gi|73987180|ref|XP_542123.2| PREDICTED: similar to Import inner membrane translocase subunit
           TIM44, mitochondrial precursor [Canis familiaris]
          Length = 454

 Score = 38.5 bits (88), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 35/189 (18%), Positives = 77/189 (40%), Gaps = 5/189 (2%)

Query: 41  FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100
           F+ FF  K  + + D   +I   +       D +  LF   T +++V+ +I+ V   FD 
Sbjct: 257 FNRFFEMKMKYDESD-NALIRASRALTDKVTDLLGGLFS-KTEMSEVLTEILRVDPAFDK 314

Query: 101 KDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159
           + FL +  N     ++++   G++  ++       Y      +   K+      S ++ I
Sbjct: 315 ERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDI 374

Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
           D++ +    + E    + I    Q +    +    ++  DP+   +++ +W   R+    
Sbjct: 375 DNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEGDPDKVLRMLYVWALCRDQDEL 434

Query: 220 NP--NWVLI 226
           NP   W L+
Sbjct: 435 NPYAAWRLL 443


>gi|194746677|ref|XP_001955803.1| GF18940 [Drosophila ananassae]
 gi|190628840|gb|EDV44364.1| GF18940 [Drosophila ananassae]
          Length = 461

 Score = 38.5 bits (88), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 9/151 (5%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA-IEKLVDSRVYQDFN- 139
           T L++ M ++V +   FD K+FL++       I+ +  E  V   +E L D      FN 
Sbjct: 303 TELSETMTELVKIDPSFDQKEFLHDCETD---IIPNILEAIVRGDLEILKDWCFESTFNI 359

Query: 140 --DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197
               ++  K     + S ++ I+++++    + E    + I    Q I    D+   ++ 
Sbjct: 360 IATPITQAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKAQVVE 419

Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPN--WVLI 226
            DPE   +V  +W   R+    NP   W L+
Sbjct: 420 GDPEKVMRVHYVWVLCRDRNELNPKAAWRLM 450


>gi|311248590|ref|XP_003123248.1| PREDICTED: mitochondrial import inner membrane translocase subunit
           TIM44-like [Sus scrofa]
          Length = 454

 Score = 38.5 bits (88), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 26/148 (17%), Positives = 62/148 (41%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T +++V+ +I+ V   FD + FL +  N     ++++   G++  ++       Y     
Sbjct: 296 TEMSEVLTEILRVDPAFDKERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 355

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K+      S ++ ID++ +    + E    + I    Q +    +    ++  DP
Sbjct: 356 PIQQAKALGLQFHSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEGDP 415

Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLI 226
           +   +++ +W   R+    NP   W L+
Sbjct: 416 DKVLRMLYVWALCRDQDELNPYAAWRLL 443


>gi|119776251|ref|YP_928991.1| hypothetical protein Sama_3119 [Shewanella amazonensis SB2B]
 gi|119768751|gb|ABM01322.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 295

 Score = 38.5 bits (88), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 24/132 (18%), Positives = 61/132 (46%), Gaps = 15/132 (11%)

Query: 98  FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157
           FD   FL  AR  Y+ +  ++ EG ++ I++ V   ++    + LS ++   +  + + V
Sbjct: 178 FDLAAFLEGARGHYKTLQQAWNEGDLNKIQEYVSIELF----NELSQQRRELEGQQHTEV 233

Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217
              D +++ A+       ++++  G++  A+       +  D      + ++W   RN+ 
Sbjct: 234 MFLDAELVRATYNNELAEVSVKFSGRYRDAAEG-----VEED------IKEVWHLERNLL 282

Query: 218 PSNPNWVLISTK 229
            +N  W+++  +
Sbjct: 283 QANSPWLIVGIQ 294


>gi|189236504|ref|XP_975336.2| PREDICTED: similar to mitochondrial import inner membrane
           translocase subunit tim44 [Tribolium castaneum]
          Length = 424

 Score = 38.5 bits (88), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ + +I  +   FD K FL +        I+++   G +  ++       +  F  
Sbjct: 266 TELSETLTEICKIDPTFDTKKFLKQCETDIIPNILEAMTRGDLEVLKDWCHEGPFNLFAI 325

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +         + S ++ +D++ ++   + E    + I    Q +    D +  ++  DP
Sbjct: 326 PIKEAYKKGYKIDSKVLDVDNVDLVMGKVMEQGPVLIISFTSQQMMCVRDPNGNVVEGDP 385

Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226
           E   +V  +W   R+I   +P   W L+
Sbjct: 386 EKVMRVAYVWVLCRDISEPDPRAAWRLL 413


>gi|156973734|ref|YP_001444641.1| hypothetical protein VIBHAR_01439 [Vibrio harveyi ATCC BAA-1116]
 gi|156525328|gb|ABU70414.1| hypothetical protein VIBHAR_01439 [Vibrio harveyi ATCC BAA-1116]
          Length = 290

 Score = 38.1 bits (87), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 43/229 (18%), Positives = 89/229 (38%), Gaps = 47/229 (20%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGN-----EKPFSGFFSGKYV------FSKRDERGIIT 61
           IL+   I F +F  +RG+LG K G+     ++P  G  + K+       F ++       
Sbjct: 96  ILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNFEQQPNTNAGG 155

Query: 62  LGK-GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
            G  G + D    I   +P G                FD   F+N +R  Y  +  ++  
Sbjct: 156 FGGFGSQTD----IPHNYPPG----------------FDQAAFINGSREHYRILQGAWNH 195

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
            ++H IE+ V   +++D    L   ++     + + V   D +I+ A  + +   ++++ 
Sbjct: 196 NQLHTIEEYVSPSLFED----LKAERAKLDGEQHTDVMYVDAEIVRADYDASKAQLSLQF 251

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            G++  A    +  +              W   R++   N  W+++  +
Sbjct: 252 SGRYRDAEEGIEEDIEDI-----------WHLERDLTVPNAPWLIVGIQ 289


>gi|270005995|gb|EFA02443.1| hypothetical protein TcasGA2_TC008130 [Tribolium castaneum]
          Length = 421

 Score = 38.1 bits (87), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ + +I  +   FD K FL +        I+++   G +  ++       +  F  
Sbjct: 263 TELSETLTEICKIDPTFDTKKFLKQCETDIIPNILEAMTRGDLEVLKDWCHEGPFNLFAI 322

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +         + S ++ +D++ ++   + E    + I    Q +    D +  ++  DP
Sbjct: 323 PIKEAYKKGYKIDSKVLDVDNVDLVMGKVMEQGPVLIISFTSQQMMCVRDPNGNVVEGDP 382

Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226
           E   +V  +W   R+I   +P   W L+
Sbjct: 383 EKVMRVAYVWVLCRDISEPDPRAAWRLL 410


>gi|118103065|ref|XP_418174.2| PREDICTED: similar to Translocase of inner mitochondrial membrane
           44 homolog (yeast) [Gallus gallus]
          Length = 451

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/189 (19%), Positives = 77/189 (40%), Gaps = 5/189 (2%)

Query: 41  FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100
           F+ FF  K  + + D    I   +       D I  LF   T +++V+ +I+ V   FD 
Sbjct: 254 FNRFFEMKMKYDESD-NAFIRASRAVTDKVTDLIGGLFS-KTEMSEVLTEILKVDPSFDK 311

Query: 101 KDFLNEA-RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159
             FL +  R+    ++++   G++  ++       Y      +   K+      S ++ I
Sbjct: 312 DRFLKQCERDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKAMGLQFHSRILDI 371

Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
           D++ +    + E    + I    Q +    ++   ++  DP+   +++ +W   R+    
Sbjct: 372 DNIDLAMGKMMEQGPVLIITFQAQIVMVIKNQKGEVVEGDPDKVLRMLYVWALCRDQDEL 431

Query: 220 NP--NWVLI 226
           NP   W L+
Sbjct: 432 NPYAAWRLL 440


>gi|157131210|ref|XP_001655824.1| mitochondrial ribosomal protein, L45, putative [Aedes aegypti]
 gi|108871608|gb|EAT35833.1| mitochondrial ribosomal protein, L45, putative [Aedes aegypti]
          Length = 334

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 80/177 (45%), Gaps = 19/177 (10%)

Query: 25  LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK----KKDNLDSINELFPI 80
           ++ RG+L  +   E+PF    +G  VF    E  +   G GK     K+      EL   
Sbjct: 81  MKERGILPPRPWMERPFYISCTGG-VF----EPYVPPEGDGKMSAVSKEGAKQKFELLEK 135

Query: 81  GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
            T+    +R I S   DF+P +F  +A+  Y    +   E   + + +++  R Y +   
Sbjct: 136 KTKSMMAVRKIRSFDDDFEPPEFAAQAQEIYIQAHNLLMEKNKYKLREIITERAYPEMMH 195

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINAS----IEENTVY--ITIRIVGQFISASYDK 191
           +++ +    K +KS    ++  ++++A     I ++ ++  +T+R   Q I A YD+
Sbjct: 196 NVTDKTIRWKFLKS----LEPPRVVHARCTDVISKDNIFGQVTVRFHTQQILAIYDR 248


>gi|332852444|ref|XP_003316109.1| PREDICTED: mitochondrial import inner membrane translocase subunit
           TIM44 isoform 1 [Pan troglodytes]
          Length = 452

 Score = 37.7 bits (86), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T +++V+ +I+ V   FD   FL +  N     ++++   G++  ++       Y     
Sbjct: 294 TEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 353

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K+      S ++ ID++ +    + E    + I    Q +    +    ++  DP
Sbjct: 354 PIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDP 413

Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLI 226
           +   +++ +W   R+    NP   W L+
Sbjct: 414 DKVLRMLYVWALCRDQDELNPYVAWRLL 441


>gi|2809420|gb|AAB97740.1| translocase of inner mitochondrial membrane Tim44 precursor [Homo
           sapiens]
          Length = 452

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T +++V+ +I+ V   FD   FL +  N     ++++   G++  ++       Y     
Sbjct: 294 TEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 353

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K+      S ++ ID++ +    + E    + I    Q +    +    ++  DP
Sbjct: 354 PIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDP 413

Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLI 226
           +   +++ +W   R+    NP   W L+
Sbjct: 414 DKVLRMLYVWALCRDQDELNPYAAWRLL 441


>gi|33636719|ref|NP_006342.2| mitochondrial import inner membrane translocase subunit TIM44
           precursor [Homo sapiens]
 gi|25014073|sp|O43615|TIM44_HUMAN RecName: Full=Mitochondrial import inner membrane translocase
           subunit TIM44; Flags: Precursor
 gi|21708003|gb|AAH33628.1| Translocase of inner mitochondrial membrane 44 homolog (yeast)
           [Homo sapiens]
 gi|119589360|gb|EAW68954.1| translocase of inner mitochondrial membrane 44 homolog (yeast),
           isoform CRA_a [Homo sapiens]
 gi|119589361|gb|EAW68955.1| translocase of inner mitochondrial membrane 44 homolog (yeast),
           isoform CRA_a [Homo sapiens]
 gi|123980796|gb|ABM82227.1| translocase of inner mitochondrial membrane 44 homolog (yeast)
           [synthetic construct]
 gi|123995621|gb|ABM85412.1| translocase of inner mitochondrial membrane 44 homolog (yeast)
           [synthetic construct]
 gi|158260291|dbj|BAF82323.1| unnamed protein product [Homo sapiens]
 gi|307685105|dbj|BAJ20483.1| translocase of inner mitochondrial membrane 44 homolog [synthetic
           construct]
          Length = 452

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T +++V+ +I+ V   FD   FL +  N     ++++   G++  ++       Y     
Sbjct: 294 TEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 353

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K+      S ++ ID++ +    + E    + I    Q +    +    ++  DP
Sbjct: 354 PIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDP 413

Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLI 226
           +   +++ +W   R+    NP   W L+
Sbjct: 414 DKVLRMLYVWALCRDQDELNPYAAWRLL 441


>gi|301773124|ref|XP_002921985.1| PREDICTED: mitochondrial import inner membrane translocase subunit
           TIM44-like, partial [Ailuropoda melanoleuca]
          Length = 452

 Score = 37.7 bits (86), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/189 (17%), Positives = 77/189 (40%), Gaps = 5/189 (2%)

Query: 41  FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100
           F+ FF  K  + + D   +I   +       D +  LF   T +++V+ +I+ V   FD 
Sbjct: 255 FNRFFEMKMKYDESD-NALIRASRALTDKVTDLLGGLFS-KTEMSEVLTEILRVDPAFDK 312

Query: 101 KDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159
           + FL +  N     ++++   G++  ++       Y      +   ++      S ++ I
Sbjct: 313 ERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQARALGLQFHSRILDI 372

Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
           D++ +    + E    + I    Q +    +    ++  DP+   +++ +W   R+    
Sbjct: 373 DNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEGDPDKVLRMLYVWALCRDQDEL 432

Query: 220 NP--NWVLI 226
           NP   W L+
Sbjct: 433 NPYAAWRLL 441


>gi|326934236|ref|XP_003213198.1| PREDICTED: mitochondrial import inner membrane translocase subunit
           TIM44-like [Meleagris gallopavo]
          Length = 435

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/189 (19%), Positives = 77/189 (40%), Gaps = 5/189 (2%)

Query: 41  FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100
           F+ FF  K  + + D    I   +       D I  LF   T +++V+ +I+ V   FD 
Sbjct: 238 FNRFFEMKMKYDESD-NAFIRASRAVTDKVTDLIGGLFS-KTEMSEVLTEILKVDPSFDK 295

Query: 101 KDFLNEA-RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159
             FL +  R+    ++++   G++  ++       Y      +   K+      S ++ I
Sbjct: 296 DRFLKQCERDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKAMGLQFHSRILDI 355

Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
           D++ +    + E    + I    Q +    ++   ++  DP+   +++ +W   R+    
Sbjct: 356 DNIDLAMGKMMEQGPVLIITFQAQVVMVIKNQKGEVVEGDPDKVLRMLYVWALCRDQDEL 415

Query: 220 NP--NWVLI 226
           NP   W L+
Sbjct: 416 NPYAAWRLL 424


>gi|4103602|gb|AAD01797.1| putative mitochondrial inner membrane protein import receptor [Homo
           sapiens]
          Length = 415

 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T +++V+ +I+ V   FD   FL +  N     ++++   G++  ++       Y     
Sbjct: 257 TEMSEVLTEILRVDPPFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 316

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K+      S ++ ID++ +    + E    + I    Q +    +    ++  DP
Sbjct: 317 PIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDP 376

Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLI 226
           +   +++ +W   R+    NP   W L+
Sbjct: 377 DKVLRMLYVWALCRDQDELNPYAAWRLL 404


>gi|332852446|ref|XP_512338.3| PREDICTED: mitochondrial import inner membrane translocase subunit
           TIM44 isoform 2 [Pan troglodytes]
          Length = 415

 Score = 37.4 bits (85), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T +++V+ +I+ V   FD   FL +  N     ++++   G++  ++       Y     
Sbjct: 257 TEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 316

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K+      S ++ ID++ +    + E    + I    Q +    +    ++  DP
Sbjct: 317 PIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDP 376

Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLI 226
           +   +++ +W   R+    NP   W L+
Sbjct: 377 DKVLRMLYVWALCRDQDELNPYVAWRLL 404


>gi|260773108|ref|ZP_05882024.1| hypothetical protein VIB_001575 [Vibrio metschnikovii CIP 69.14]
 gi|260612247|gb|EEX37450.1| hypothetical protein VIB_001575 [Vibrio metschnikovii CIP 69.14]
          Length = 289

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 39/223 (17%), Positives = 89/223 (39%), Gaps = 39/223 (17%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFS---GKYVFSKRDE---RGIITLGKGK 66
           IL+F  I F +F   R  L  K G+  P    ++    +  F +  E   +   + G G 
Sbjct: 99  ILIFGLIGFALFKLARHFLAGKQGSLNPRQPAYNTNVHRQSFEQAPEQEFKPAASSGFGS 158

Query: 67  KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
              N   +   +P G                FD   F+N +R  Y  +  ++   ++  I
Sbjct: 159 TMHN--DVPHNYPPG----------------FDKIAFINGSREHYRILQGAWNHNQLETI 200

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
           E+ V   ++ D     + R+  ++  ++ ++ + D +I+ A  ++    ++++  G+   
Sbjct: 201 EEYVSQSLFSDLK---AEREKLDQQPQTEVMYV-DAEIVRADYDDRKAQLSLQFTGRCRD 256

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
              + +            +++DIW   R++   N  W+++  +
Sbjct: 257 LGDETEE-----------EILDIWHLERDLTQPNAPWLIVGIQ 288


>gi|62897685|dbj|BAD96782.1| translocase of inner mitochondrial membrane 44 homolog [Homo
           sapiens]
          Length = 452

 Score = 37.4 bits (85), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T +++V+ +I+ V   FD   FL +  N     ++++   G++  ++       Y     
Sbjct: 294 TEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 353

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K+      S ++ ID++ +    + E    + I    Q +    +    ++  DP
Sbjct: 354 PIQQAKALGLQFHSRILDIDNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKGEVVEGDP 413

Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLI 226
           +   +++ +W   R+    NP   W L+
Sbjct: 414 DKVLRMLYVWALCRDQDELNPYAAWRLL 441


>gi|148224361|ref|NP_001087692.1| translocase of inner mitochondrial membrane 44 [Xenopus laevis]
 gi|51703695|gb|AAH81090.1| MGC82677 protein [Xenopus laevis]
          Length = 451

 Score = 37.0 bits (84), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 4/158 (2%)

Query: 72  DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEAIVDSFFEGKVHAIEKLV 130
           D I  LF   T +++V+ +I+ V  +FD   FL    R+    I+++   G +  ++   
Sbjct: 284 DLIGGLFS-KTEMSEVLTEILKVDPNFDKDKFLKLCERDIIPNILEAMIRGDLDVLKDWC 342

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
               Y      +   KS      S ++ ID++ +    + E    + I    Q + A  +
Sbjct: 343 YEATYSQLAHPIQQAKSMGLQFNSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMAITN 402

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLI 226
           +   ++  D +   +++ +W   R+    NP   W L+
Sbjct: 403 QRGDIVEGDQDKVLRMLYVWALCRDQDELNPYAAWRLL 440


>gi|281349988|gb|EFB25572.1| hypothetical protein PANDA_010903 [Ailuropoda melanoleuca]
          Length = 405

 Score = 37.0 bits (84), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 34/189 (17%), Positives = 77/189 (40%), Gaps = 5/189 (2%)

Query: 41  FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100
           F+ FF  K  + + D   +I   +       D +  LF   T +++V+ +I+ V   FD 
Sbjct: 208 FNRFFEMKMKYDESD-NALIRASRALTDKVTDLLGGLFS-KTEMSEVLTEILRVDPAFDK 265

Query: 101 KDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159
           + FL +  N     ++++   G++  ++       Y      +   ++      S ++ I
Sbjct: 266 ERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQARALGLQFHSRILDI 325

Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
           D++ +    + E    + I    Q +    +    ++  DP+   +++ +W   R+    
Sbjct: 326 DNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEGDPDKVLRMLYVWALCRDQDEL 385

Query: 220 NP--NWVLI 226
           NP   W L+
Sbjct: 386 NPYAAWRLL 394


>gi|291411565|ref|XP_002722049.1| PREDICTED: translocase of inner mitochondrial membrane 44
           [Oryctolagus cuniculus]
          Length = 452

 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 35/189 (18%), Positives = 76/189 (40%), Gaps = 5/189 (2%)

Query: 41  FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100
           F+ FF  K  + + D   +I   +       D +  LF   T +++V+ +I+ V   FD 
Sbjct: 255 FNRFFEMKMKYDESD-NALIRASRALTDKVTDLLGGLFS-KTEMSEVLTEILRVDPAFDK 312

Query: 101 KDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159
             FL +  N     I+++   G++  ++       Y      +   K+      S ++ +
Sbjct: 313 DRFLQQCENDIIPNILEAMISGELDILKDWCYEATYSQLAHPIQQAKALGFQFHSRILDV 372

Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
           D++ +    + E    + I    Q +    +    ++  DP+   +++ +W   R+    
Sbjct: 373 DNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEGDPDKVLRMLYVWALCRDQDEL 432

Query: 220 NP--NWVLI 226
           NP   W L+
Sbjct: 433 NPYAAWRLL 441


>gi|300798484|ref|NP_001179583.1| mitochondrial import inner membrane translocase subunit TIM44 [Bos
           taurus]
 gi|297476712|ref|XP_002688909.1| PREDICTED: translocase of inner mitochondrial membrane 44 homolog
           (yeast) [Bos taurus]
 gi|296485872|gb|DAA27987.1| translocase of inner mitochondrial membrane 44 homolog [Bos taurus]
          Length = 454

 Score = 37.0 bits (84), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/148 (17%), Positives = 60/148 (40%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T +++V+ +I+ V   FD   FL +  N     ++++   G++  ++       Y     
Sbjct: 296 TEMSEVLTEILRVDPAFDKDRFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 355

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K+      S ++ ID + +    + E    + I    Q +    +    ++  DP
Sbjct: 356 PIQQAKALGLQFHSRILDIDHIDLAMGKMMEQGPVLIITFQAQMVMVIKNPKGEVVEGDP 415

Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLI 226
           +   +++ +W   R+    NP   W L+
Sbjct: 416 DKVLRMLYVWALCRDQDELNPYAAWRLL 443


>gi|156048528|ref|XP_001590231.1| predicted protein [Sclerotinia sclerotiorum 1980]
 gi|154693392|gb|EDN93130.1| predicted protein [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 135

 Score = 36.2 bits (82), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDF---NDSLSTRKSNEKNVK 153
           D+ P+D  N    ++   +   FEGK+  + ++ D R+YQ+F    D    + + E+N K
Sbjct: 10  DYTPQDIKNPWPMNFHLALGGDFEGKIEVLVEVRDERIYQNFYKGKDFELMKNTPERNAK 69

Query: 154 SSLVG 158
             ++G
Sbjct: 70  DPVIG 74


>gi|296232753|ref|XP_002761726.1| PREDICTED: mitochondrial import inner membrane translocase subunit
           TIM44 [Callithrix jacchus]
          Length = 452

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 34/189 (17%), Positives = 75/189 (39%), Gaps = 5/189 (2%)

Query: 41  FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100
           F+ FF  K  + + D   +I   +       D +  LF   T +++ + +I+ V   FD 
Sbjct: 255 FNRFFEMKVKYDESDN-ALIRASRALTDKVTDLLGGLFS-KTEMSEALTEILRVDPAFDK 312

Query: 101 KDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159
             FL +  N     ++++   G++  ++       Y      +   K+      S ++ I
Sbjct: 313 DRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDI 372

Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
           D++ +    + E    + I    Q +    +    ++  DP+   +++ +W   R+    
Sbjct: 373 DNVDLAMGKMMEQGPVLIITFQAQLVMLVRNPKGEVVEGDPDKVLRMLYVWALCRDQDEL 432

Query: 220 NP--NWVLI 226
           NP   W L+
Sbjct: 433 NPYAAWRLL 441


>gi|126323825|ref|XP_001376780.1| PREDICTED: similar to Translocase of inner mitochondrial membrane
           44 homolog (yeast) [Monodelphis domestica]
          Length = 443

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 35/189 (18%), Positives = 77/189 (40%), Gaps = 5/189 (2%)

Query: 41  FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100
           F+ FF  K  + + D   +I + +       D +  LF   T +++V+ +I+ V   FD 
Sbjct: 246 FNRFFEMKMKYDESD-NTLIRVSRAVTDKITDLVGGLFS-KTEMSEVLTEILKVDPTFDK 303

Query: 101 KDFLNEA-RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159
             FL +  R+    ++++   G++  ++       Y      +   KS      S ++ I
Sbjct: 304 DRFLQQCERDIIPNVLEAMITGELDILKDWCYEATYSQLAHPIHQAKSMGLQFHSRILDI 363

Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
            ++ +    + E    + I    Q +    +    ++  DP+   +++ +W   R+    
Sbjct: 364 SNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGDVVEGDPDKVLRMLYVWALCRDQTEL 423

Query: 220 NP--NWVLI 226
           NP   W L+
Sbjct: 424 NPYAAWRLL 432


>gi|255641370|gb|ACU20962.1| unknown [Glycine max]
          Length = 181

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 27/145 (18%), Positives = 58/145 (40%), Gaps = 19/145 (13%)

Query: 96  TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNE------ 149
           T +    F NEA N Y+ I     +G    + K V   ++    + +  R++        
Sbjct: 30  TGYSKNQFYNEAANMYKEINTLIAKGDKRTLRKAVTENMFSALKNEIKQRETAWSRVYWE 89

Query: 150 --------KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201
                   + +++ L+G+D        + +  + +T+ I+ +    +YD    +++ D  
Sbjct: 90  MVEPVVKIRTLRARLIGVD-----RKDLNKTFIQLTLEILAKQKFEAYDSKGSVVAGDKS 144

Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLI 226
               V DIW F +++  +   W L 
Sbjct: 145 KEVLVRDIWVFEKSMFHAGATWRLC 169


>gi|125976736|ref|XP_001352401.1| GA10857 [Drosophila pseudoobscura pseudoobscura]
 gi|54641147|gb|EAL29897.1| GA10857 [Drosophila pseudoobscura pseudoobscura]
          Length = 625

 Score = 36.2 bits (82), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
           SR +Q   D  S   + E+N++  L G+D+++ I AS+E++TV  T 
Sbjct: 567 SRTHQVSRDLRSAADNAEQNLRQLLTGVDNLRQIAASLEQSTVQSTA 613


>gi|89073249|ref|ZP_01159779.1| hypothetical protein SKA34_19790 [Photobacterium sp. SKA34]
 gi|89050959|gb|EAR56423.1| hypothetical protein SKA34_19790 [Photobacterium sp. SKA34]
          Length = 291

 Score = 36.2 bits (82), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 27/130 (20%), Positives = 62/130 (47%), Gaps = 15/130 (11%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
           +F+   FL+ +R+ Y  I  ++   ++  I++ V S ++ D   +   + S E++ +   
Sbjct: 173 NFNMNSFLSGSRDHYRIIQGAWNHNELAKIKEYVSSALFADLQ-AERAKLSGEQHTEVMY 231

Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
           V   D +++ A  + N+  ++I+  G++      KD     S   I   + D+W   R++
Sbjct: 232 V---DAELVRADYDANSAQLSIQFSGRY------KD-----SQEGIEEDINDVWHLERDL 277

Query: 217 PPSNPNWVLI 226
              N  W+++
Sbjct: 278 KTPNAPWLIV 287


>gi|297703381|ref|XP_002828619.1| PREDICTED: mitochondrial import inner membrane translocase subunit
           TIM44-like [Pongo abelii]
          Length = 451

 Score = 36.2 bits (82), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 25/148 (16%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T +++V+ +I+ V   FD   FL +  N     ++++   G++  ++       Y     
Sbjct: 293 TEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 352

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K+      S ++ ID++ +    + E    + I    Q +    +    ++  +P
Sbjct: 353 PIQQAKALGLQFHSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGNP 412

Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLI 226
           +   +++ +W   R+    NP   W L+
Sbjct: 413 DEVLRMLYVWALCRDQDELNPYAAWRLL 440


>gi|170068221|ref|XP_001868783.1| mitochondrial import inner membrane translocase subunit tim44
           [Culex quinquefasciatus]
 gi|167864292|gb|EDS27675.1| mitochondrial import inner membrane translocase subunit tim44
           [Culex quinquefasciatus]
          Length = 431

 Score = 36.2 bits (82), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 28/148 (18%), Positives = 59/148 (39%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ + +I  +   FD K FL +  N     I+++   G +  ++       Y     
Sbjct: 273 TELSETLTEICKIDPSFDQKQFLRDCENDIIPNILEAMIRGDLEILKDWCFESTYNIIAT 332

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            ++  +     + S ++ I+++ +    + E    + +    Q I    D  N ++  DP
Sbjct: 333 PIAQAQKAGFFLDSKILDIENVDLAMGKVMEQGPVLIVTFQTQQIMCVRDSKNAVVEGDP 392

Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226
           E   +   +W   R+    NP   W L+
Sbjct: 393 EKVMRCNYVWVLCRDPNDLNPRSAWRLM 420


>gi|209694565|ref|YP_002262493.1| putative transport protein [Aliivibrio salmonicida LFI1238]
 gi|208008516|emb|CAQ78689.1| putative transport protein [Aliivibrio salmonicida LFI1238]
          Length = 316

 Score = 35.8 bits (81), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 24/133 (18%), Positives = 62/133 (46%), Gaps = 17/133 (12%)

Query: 98  FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157
           FD + F+N +R  Y  +  ++   ++  I++ V   +Y D    L   ++N +  + + V
Sbjct: 199 FDLQGFINGSREHYRILQGAWNHNQLETIQEYVSISLYND----LVQERANLEGEQHTDV 254

Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL-ISSDPEIFGKVIDIWTFVRNI 216
              D +++ A    ++  ++++  G++      +D++  +  D      + D+W   R++
Sbjct: 255 MFVDAEVVRAEHNASSAQLSLQFSGRY------RDSVEGLQED------ITDVWHLERDL 302

Query: 217 PPSNPNWVLISTK 229
              N  W++I  +
Sbjct: 303 TQPNAPWLIIGIQ 315


>gi|298498003|ref|ZP_07007810.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|297542336|gb|EFH78386.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 272

 Score = 35.8 bits (81), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 36/183 (19%), Positives = 74/183 (40%), Gaps = 27/183 (14%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65
           IL+   I F +F  +R  L  K G  N+      +SG  +  F + +        ++G G
Sbjct: 98  ILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQPQSMGGG 157

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                   +   +P G                FD   F+N AR  Y  +  ++   ++  
Sbjct: 158 FGSAAQSDVPHNYPAG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 201

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           I + V   +++D    L   ++N +  + + V   D +I+ A  + N   ++++  G+++
Sbjct: 202 IREYVSPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYV 257

Query: 186 SAS 188
           + S
Sbjct: 258 TLS 260


>gi|114328920|ref|YP_746077.1| transporter [Granulibacter bethesdensis CGDNIH1]
 gi|114317094|gb|ABI63154.1| transporter [Granulibacter bethesdensis CGDNIH1]
          Length = 326

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197
           FN+ L+   S   +   + V +    +  A  E    Y T+ ++   I A+YD    ++ 
Sbjct: 235 FNEQLTALASRGLHNTVTNVTLQKGDLSEAWREGTLEYATVAMLFSMIDATYDSSGRVVE 294

Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
            D        + WTFVR+  P  P W+L
Sbjct: 295 GDASQLQTATEFWTFVRS--PGGP-WIL 319


>gi|297275995|ref|XP_001098363.2| PREDICTED: mitochondrial import inner membrane translocase subunit
           TIM44 [Macaca mulatta]
          Length = 461

 Score = 35.8 bits (81), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T +++V+ +I+ V   FD   FL +  N     ++++   G++  ++       Y     
Sbjct: 303 TEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAY 362

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K+      S ++ ID++ +    + E    + I    Q +    +    ++  DP
Sbjct: 363 PIQQAKALGLQFHSRILDIDNIDLAMGKMMEPGPVLIITFQAQLVVVVRNPKGEVVEGDP 422

Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLI 226
           +   +++ +W   R+    NP   W L+
Sbjct: 423 DKVLRMLYVWALCRDQDELNPYAAWRLL 450


>gi|254425847|ref|ZP_05039564.1| hypothetical protein S7335_414 [Synechococcus sp. PCC 7335]
 gi|196188270|gb|EDX83235.1| hypothetical protein S7335_414 [Synechococcus sp. PCC 7335]
          Length = 515

 Score = 35.8 bits (81), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 55  DERGIITLGKGKKK-DNLDSINELFPIGT-RLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
           D++ IIT  +GK    NLD + +    GT +   V  D +   +D  P   L  A  S +
Sbjct: 168 DQQSIITYSQGKSYLYNLDGVEQATFAGTIQWGTVDGDYLIAVSDDRPGFLLYSAEGSLQ 227

Query: 113 AIVDSFFEGKVHAIEKLV-----DSRVYQDFNDSL 142
           A  + FF G V + +KLV     +SR+Y +F+ SL
Sbjct: 228 ATFEGFFRGFVPSEQKLVVTDNDESRLY-NFDGSL 261


>gi|170042852|ref|XP_001849125.1| 39S ribosomal protein L45 [Culex quinquefasciatus]
 gi|167866282|gb|EDS29665.1| 39S ribosomal protein L45 [Culex quinquefasciatus]
          Length = 336

 Score = 35.8 bits (81), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 19/202 (9%)

Query: 25  LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK----KKDNLDSINELFPI 80
           ++ RG+L  +   E+PF    +G  VF    E  I   G GK     K+      E    
Sbjct: 80  MKERGLLPPRPWLERPFHISCTGG-VF----EPYIPPEGDGKMSAVSKEGAKQKFEQLEK 134

Query: 81  GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
            T+    +R I S   DF+P +F   A++ Y    ++      + + ++V  R Y +   
Sbjct: 135 KTKSMMAIRKIRSYDDDFEPPEFAGYAQDIYIDTHNTLAAKNKYKLREIVTERAYPELIH 194

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINAS----IEENTVY--ITIRIVGQFISASYDKDNL 194
           ++S +  + K +KS    ++  ++++A     I ++ ++  +T+R   Q I A YD+   
Sbjct: 195 NVSDKTIHWKFLKS----LEPPRVVHARCTDVISKDNIFAQVTVRFHSQQILAIYDRFGR 250

Query: 195 LISSDPEIFGKVIDIWTFVRNI 216
           L+     I    ++   F +++
Sbjct: 251 LMHGSETIAKDCLEYVVFEKHV 272


>gi|119115002|ref|XP_310830.3| AGAP000291-PA [Anopheles gambiae str. PEST]
 gi|116130625|gb|EAA06726.3| AGAP000291-PA [Anopheles gambiae str. PEST]
          Length = 401

 Score = 35.8 bits (81), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNS-YEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ + +I  +   FD K FL +  N     ++++   G++  +        Y     
Sbjct: 243 TELSETLTEICKIDPSFDQKQFLRDCENDIIPNVLEAIVRGELEVLRDWCFESTYNIIAT 302

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            ++  +     + S ++ I+++ +    + E    + +    Q I    D    +I  DP
Sbjct: 303 PIAQAQKAGCRLDSKILDIENVDLAMGKVMEQGPVLIVTFQTQQIMCVRDGKGAVIEGDP 362

Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226
           E   +   +W   R+    +P   W L+
Sbjct: 363 EKVMRCHHVWVLCRDPNELDPKAAWRLM 390


>gi|290993354|ref|XP_002679298.1| predicted protein [Naegleria gruberi]
 gi|284092914|gb|EFC46554.1| predicted protein [Naegleria gruberi]
          Length = 240

 Score = 35.4 bits (80), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 14/129 (10%)

Query: 88  MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV---HAIEKLVDSRVYQDFNDSL-- 142
           + D +    DF P D+ +E ++ Y  IV+ F  G +       KL       +F  ++  
Sbjct: 5   VEDYMGELYDFYP-DYWDEGQHGYWGIVNGFQSGTIFFNDNTTKLDTLNPSSNFMCAVRY 63

Query: 143 --STRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
             S + SNE   K  L     + I +A+     +Y+T+R +G+      D D++ +  +P
Sbjct: 64  IVSNKPSNEIAAKDCLYSSKQLDIFSATASSFGIYVTVRNLGR------DYDSVRLGLNP 117

Query: 201 EIFGKVIDI 209
           E  G  + +
Sbjct: 118 ERLGSGVHV 126


>gi|91206049|ref|YP_538404.1| hypothetical protein RBE_1234 [Rickettsia bellii RML369-C]
 gi|157826585|ref|YP_001495649.1| hypothetical protein A1I_01080 [Rickettsia bellii OSU 85-389]
 gi|91069593|gb|ABE05315.1| unknown [Rickettsia bellii RML369-C]
 gi|157801889|gb|ABV78612.1| hypothetical protein A1I_01080 [Rickettsia bellii OSU 85-389]
          Length = 211

 Score = 35.4 bits (80), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 46/227 (20%), Positives = 91/227 (40%), Gaps = 43/227 (18%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---------SKRDERGIITLG 63
           +L+FA I FF+  +L   LG  + ++      + G+ V          S  +E+ + T  
Sbjct: 8   LLIFAGIAFFIINKLITTLGATSDDDPAKQKSYFGEPVIKDVTHSSNKSYEEEKDLPTAQ 67

Query: 64  KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
             K   NL     +  +   +  V + + +    F P  F+N A+ +++ I+++ ++ + 
Sbjct: 68  DIKTFKNLIVEQNITAVVDGMETVHKRLNA----FQPIKFINNAKIAFQMIIEAAYKNQT 123

Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE-----NTVYITI 178
             + +LVD R  ++F           + +  S     D   +NA   E     N ++I +
Sbjct: 124 EELAELVDKRFLEEF-----------EKISDSYGNFFDSTALNAKYSEIYTFGNNIFIKL 172

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
              G+ +    DK             ++ + WTF RN      +W L
Sbjct: 173 LFQGKNV---VDK-----------IEELKEEWTFTRNANTKEVDWFL 205


>gi|221102145|ref|XP_002170372.1| PREDICTED: similar to mitochondrial ribosomal protein L45, partial
           [Hydra magnipapillata]
          Length = 98

 Score = 35.4 bits (80), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 5/81 (6%)

Query: 148 NEKNVKSSLVGIDDMKIINAS---IEENTVY--ITIRIVGQFISASYDKDNLLISSDPEI 202
            + NV + +  ++  ++INA+   + EN +Y  +T+R+  + I    D+ N +++ DP+ 
Sbjct: 9   QQTNVLAIVKEVEKPRVINAALSAVSENDLYAQVTVRLHTEQILTIRDRFNRIVTGDPKT 68

Query: 203 FGKVIDIWTFVRNIPPSNPNW 223
              VID   F R++P     W
Sbjct: 69  PRSVIDYVVFERHLPDPYGKW 89


>gi|289741253|gb|ADD19374.1| mitochondrial import inner membrane translocase subunit TIM44
           [Glossina morsitans morsitans]
          Length = 421

 Score = 35.4 bits (80), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 28/161 (17%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEA-------------RNSYEAIVDSFFEGKVHAIEK 128
           T L++ M ++  +  +FD K FL +              R   E + D  FE   +    
Sbjct: 262 TELSETMTELCKIDPNFDQKQFLRDCEVDIIPNILEATVRGDLEILKDWCFESTYN---- 317

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
           L+ + + Q     L         + S ++ I+++ ++   + E    + I    Q I   
Sbjct: 318 LIATPINQAIKSGLC--------LDSKILDIENIDLVMGKVMEQGPVLIITFQAQQIMCL 369

Query: 189 YDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPN--WVLI 226
            D+  N ++  DPE   +V  +W   R+    NP   W L+
Sbjct: 370 KDRATNKIVEGDPEKVMRVNHVWVLCRDPNELNPKAAWRLL 410


>gi|160877221|ref|YP_001556537.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
           OS195]
 gi|160862743|gb|ABX51277.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
           OS195]
 gi|315269425|gb|ADT96278.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
           OS678]
          Length = 287

 Score = 35.0 bits (79), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 44/222 (19%), Positives = 96/222 (43%), Gaps = 34/222 (15%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG-NEKPF---SGFFSGKYVFSKRDERGIITLGKGKKK 68
           IL+   + F +F  +R V+  K G  ++P    +G  +      + ++ G  T       
Sbjct: 94  ILIIGLLAFVLFKIVRTVMASKAGAQQRPAYAGAGQPNPNMQRQQTEQTGFAT------- 146

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
            N +S +  F  G   + V  D+ +    FD   FL  AR+ Y+ +  ++ E  +  I++
Sbjct: 147 -NTNSGSNGF--GQATSAVPFDLPA---GFDLPSFLEGARSHYKTLQLAWNENDLSKIQE 200

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
            V   +Y +    LS ++      + + V   D +++ A+   N   ++++  G++    
Sbjct: 201 YVSIELYNE----LSNQRRELVGDQHTEVMFLDAELVRATHNANLAEVSVKFSGRY---- 252

Query: 189 YDKDNLL-ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
             +D +  +  D      + +IW   RN+  +N  W+++  +
Sbjct: 253 --RDTVEGVEED------IKEIWHLERNVTQANSPWLIVGVE 286


>gi|195388820|ref|XP_002053076.1| GJ23681 [Drosophila virilis]
 gi|194151162|gb|EDW66596.1| GJ23681 [Drosophila virilis]
          Length = 428

 Score = 35.0 bits (79), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 11/152 (7%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEAR-----NSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136
           T L++ M ++V +  +FD K+FL +       N  EAIV     G +  ++       Y 
Sbjct: 270 TELSETMTELVKIDPNFDQKEFLYDCEKDIIPNVLEAIV----RGDLEILKDWCFESTYN 325

Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196
                +   K +   + S ++ I+++++    + E    + I    Q I    D+   ++
Sbjct: 326 IIATPIMQAKKSGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKAQVV 385

Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPN--WVLI 226
             +P+   +V  +W   R+    NP   W L+
Sbjct: 386 EGNPDKVMRVHYVWVLCRDRNELNPKAAWRLM 417


>gi|17508985|ref|NP_491780.1| hypothetical protein T09B4.9 [Caenorhabditis elegans]
 gi|6016367|sp|O02161|TIM44_CAEEL RecName: Full=Probable mitochondrial import inner membrane
           translocase subunit tim-44; Flags: Precursor
 gi|2039379|gb|AAB53011.1| Hypothetical protein T09B4.9 [Caenorhabditis elegans]
          Length = 425

 Score = 35.0 bits (79), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 28/165 (16%), Positives = 70/165 (42%), Gaps = 4/165 (2%)

Query: 72  DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLV 130
           + I  +F     +++V+ +I  +  +FD +++L          I+++F    +  ++   
Sbjct: 256 EKIGSVFSGQNEVSEVLTEIHKIDANFDKQEWLRFCETKIIPNILEAFIRFDLEVLQSWC 315

Query: 131 DSRVYQDFNDSLSTRKSNEKNVK-SSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
             R Y   +  +   +    + K S ++ I+ +++    + E    + I      I+ + 
Sbjct: 316 HERAYTQLSTVVKEYQKMHFSTKDSRIIDINKVEMATGKMMEQGPVLIISFQVYMINVTK 375

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKLGE 232
           + D  ++  DP+   ++  IW   R++   NP   W L+   + E
Sbjct: 376 NADGKVVEGDPDNPKRINHIWVLCRDVEEYNPALAWKLLEVHMQE 420


>gi|332264171|ref|XP_003281120.1| PREDICTED: mitochondrial import inner membrane translocase subunit
           TIM44 [Nomascus leucogenys]
          Length = 455

 Score = 35.0 bits (79), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 31/167 (18%), Positives = 65/167 (38%), Gaps = 15/167 (8%)

Query: 72  DSINELFPIG----TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE------G 121
           D + +L   G    T +++V+ +I+ V   FD   FL +  N    I+ +  E      G
Sbjct: 281 DKVTDLLGEGSVSKTEMSEVLTEILRVDPAFDKDRFLKQCEND---IIPNVLEVGAAPPG 337

Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
            +      +  + Y      +   K+      S ++ ID++ +    + E    + I   
Sbjct: 338 PLPGSRSWLHQQTYSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQ 397

Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLI 226
            Q +    +    ++  DP+   +++ +W   R+    NP   W L+
Sbjct: 398 AQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRLL 444


>gi|170584097|ref|XP_001896855.1| Tim44-like domain containing protein [Brugia malayi]
 gi|158595793|gb|EDP34297.1| Tim44-like domain containing protein [Brugia malayi]
          Length = 773

 Score = 34.7 bits (78), Expect = 9.5,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 64/142 (45%), Gaps = 2/142 (1%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           + +++V+ +I  V  +F+  ++L          ++++F  G +  ++     R Y   + 
Sbjct: 614 SEISEVLSEIQKVDPNFEKNEWLRFCEKEIIPNVLEAFIRGDLKILKDWCYERAYNILSA 673

Query: 141 SLST-RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199
           +++  +K N     S ++ I+ ++++   + E+   I I      ++   + +  ++  D
Sbjct: 674 TVNEYKKINFNTTDSRIIDINRVEMVTGKMMEHGPVIIITFQAYMVNIVRNMEGKVVEGD 733

Query: 200 PEIFGKVIDIWTFVRNIPPSNP 221
           P    +V  +W   R++   NP
Sbjct: 734 PNSPVRVHHVWVMCRDMEEYNP 755


>gi|157118792|ref|XP_001653263.1| mitochondrial import inner membrane translocase subunit tim44
           [Aedes aegypti]
 gi|108875602|gb|EAT39827.1| mitochondrial import inner membrane translocase subunit tim44
           [Aedes aegypti]
          Length = 433

 Score = 34.7 bits (78), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 30/148 (20%), Positives = 59/148 (39%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ + +I  +  +FD K FL +  N     I+++   G +  ++       Y     
Sbjct: 275 TELSETLTEICKIDPNFDQKQFLRDCENDIIPNILEAMIRGDLEVLKDWCFESTYNIIAT 334

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +S  +     + S ++ I+++ +    + E    + I    Q I    D    +I  DP
Sbjct: 335 PISQAQKLGYYLDSKVLDIENVDLAMGKVMEQGPVLIITFQTQQIMCVRDSKGNVIEGDP 394

Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226
           E   +   +W   R+    NP   W L+
Sbjct: 395 EKVMRCNYVWVLCRDPNDLNPKSAWRLM 422


>gi|90075058|dbj|BAE87209.1| unnamed protein product [Macaca fascicularis]
          Length = 453

 Score = 34.7 bits (78), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T +++V+ +I+ V   FD   FL +  N     ++++   G++  ++       Y     
Sbjct: 295 TEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAY 354

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K+      S ++ ID++ +    + E    + I    Q +    +    ++  DP
Sbjct: 355 PIQQAKALGLQFHSRILDIDNIDLAMGKMMEPGPVLIITFQAQLVMVVRNPKGEVVEGDP 414

Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLI 226
           +   +++ +W   R+    NP   W L+
Sbjct: 415 DKVLRMLYVWALYRDQDELNPYAAWRLL 442


Searching..................................................done


Results from round 2




>gi|218661852|ref|ZP_03517782.1| import inner membrane translocase subunit Tim44 [Rhizobium etli
           IE4771]
          Length = 234

 Score =  294 bits (753), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 84/233 (36%), Positives = 131/233 (56%), Gaps = 6/233 (2%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER--GIITLG 63
           M S DF+ L F      +F QLR VLG++TGNEKP    ++ +            ++TL 
Sbjct: 1   MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60

Query: 64  K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
           +    G+ +D   +I+ +   GT LN+ +R +      F+PK+FLN AR +YE IV ++ 
Sbjct: 61  RRDATGEDEDRFAAIDAVAAPGTPLNESLRALNKADPSFNPKEFLNGARMAYEMIVMAYA 120

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +G    ++ L+   VY  F+ ++  R+S  + VKS+ VGID  +I +A  + +   IT+R
Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGERESRGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           IV Q ISA+YDK + LI  D E   +V D+WTF R+    +PNW L++T+   
Sbjct: 181 IVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATESEH 233


>gi|218673282|ref|ZP_03522951.1| import inner membrane translocase subunit Tim44 [Rhizobium etli
           GR56]
          Length = 234

 Score =  292 bits (749), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 82/233 (35%), Positives = 130/233 (55%), Gaps = 6/233 (2%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER--GIITLG 63
           M S DF+ L F      +F QLR VLG++TGNEKP    ++ +            ++TL 
Sbjct: 1   MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60

Query: 64  K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
           +     + +D   +I+ +   GT LN+ +R +      F+PK+FLN AR +YE IV ++ 
Sbjct: 61  RRDATAEDEDRFAAIDAVAAPGTPLNESLRALNKADPSFNPKEFLNGARMAYEMIVMAYA 120

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +G    ++ L+   VY  F+ ++  R++  + VKS+ VGID  +I +A  + +   IT+R
Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           IV Q ISA+YDK + LI  D E   +V D+WTF R+    +PNW L++T+   
Sbjct: 181 IVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATESEH 233


>gi|39933380|ref|NP_945656.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
           palustris CGA009]
 gi|39653005|emb|CAE25747.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
          Length = 289

 Score =  291 bits (744), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64
           D   ++F  +  F+FL+LR VLG++TG+E+P     + + +   + +  ++++       
Sbjct: 56  DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDNNVVSMPGTVIDQ 115

Query: 65  ------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
                        D    +    + L   +  I    + FD + F+  A+++YE IV +F
Sbjct: 116 APMAPNADVVPPSDRWKGIAEPDSELEHGLNAIAQNDSSFDAQHFITGAKSAYEMIVMAF 175

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
             G   ++  L+ S VY+ F+ ++  R+ N+  V++  V I+  ++I+A + + T  +T+
Sbjct: 176 ANGDRRSLRDLLSSEVYESFDAAIKDREKNDLKVETRFVSIEKAELISAELRDRTAMLTL 235

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           + V Q ISA+ DK   ++   P+    + D+WTF R+    +PNW L+ T  G
Sbjct: 236 KFVSQMISATRDKTGAVVDGSPDKVVDITDVWTFARDTSSRDPNWKLVGTGSG 288


>gi|328545867|ref|YP_004305976.1| Import inner membrane translocase subunit Tim44 [polymorphum gilvum
           SL003B-26A1]
 gi|326415607|gb|ADZ72670.1| Import inner membrane translocase subunit Tim44 [Polymorphum gilvum
           SL003B-26A1]
          Length = 242

 Score =  290 bits (743), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 76/238 (31%), Positives = 128/238 (53%), Gaps = 14/238 (5%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRD------------- 55
            D   ++F  +  FVF +LR VLGK+TGNE+P    +S     ++               
Sbjct: 5   FDIYNIIFLALAIFVFFRLRSVLGKRTGNERPPFDPYSKPARDNRAPGGAEAGGVDNVIP 64

Query: 56  -ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
                +  G G  +     ++++ P G+ LN  +R I+SV   F+P+ FL  AR +YE I
Sbjct: 65  LPGKPVEAGAGDTERGAVVLDKVAPSGSALNAALRQILSVDRSFEPEQFLQGARAAYEMI 124

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
           V +F EG    ++ L+   VY  F  ++S R++  + ++S+ VGID   I+ A+++ +  
Sbjct: 125 VTAFAEGDRKTLKNLLSKEVYDGFVTAISEREARGETIESTFVGIDKADIVEAALKGSVA 184

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            +T+R+  + ISA+ DKD  ++  DP    +V+DIWTF R+    +PNW L++T+  E
Sbjct: 185 QVTVRLQSELISATRDKDGHVVDGDPSRVTEVVDIWTFARDTTSRDPNWKLVATESAE 242


>gi|299133204|ref|ZP_07026399.1| import inner membrane translocase subunit Tim44 [Afipia sp. 1NLS2]
 gi|298593341|gb|EFI53541.1| import inner membrane translocase subunit Tim44 [Afipia sp. 1NLS2]
          Length = 234

 Score =  289 bits (741), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 114/233 (48%), Gaps = 10/233 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
           D   ++F  +  F+FL+LR VLG++TG+E+P     +     +  D   +   G    + 
Sbjct: 2   DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPYDRVTRDVAPTGNDNNVVRMPGTAVDQA 61

Query: 70  NLDSINEL----------FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
            L    +               + L   +  + +    F+ + F++ A+++YE IV +F 
Sbjct: 62  TLAPSADPVSPRERWKGIAAPDSELASGLDQVAAADPSFNAQHFISGAKSAYEMIVLAFA 121

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
            G    ++ L+ S VY  F   +  R+   + V++    ID  ++++A + +   ++T+R
Sbjct: 122 NGDRRTLKDLLSSDVYDGFEAVIKGREQQGEKVETKFASIDKAELVSAGVRDKLAHLTVR 181

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            V Q I+A+ DKD  +I  +PE    V D+WTF R++   +PNW L+ T+ G 
Sbjct: 182 FVSQMITATRDKDGAVIDGNPEKLTDVTDVWTFSRDVSSRDPNWKLVGTESGH 234


>gi|209551513|ref|YP_002283430.1| import inner membrane translocase subunit Tim44 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209537269|gb|ACI57204.1| import inner membrane translocase subunit Tim44 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 234

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 81/233 (34%), Positives = 129/233 (55%), Gaps = 6/233 (2%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER--GIITLG 63
           M S DF+ L F      +F QLR VLG++TGNEKP    ++ +            ++TL 
Sbjct: 1   MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60

Query: 64  KG----KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
           +     + +D   +I+     GT LN+ +R +      F PK+FLN AR +YE IV ++ 
Sbjct: 61  RRDATTEDEDRFAAIDAFAAPGTPLNESLRALNKADPAFSPKEFLNGARMAYEMIVMAYA 120

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +G    ++ L+   VY  F+ ++  R++  + VKS+ VGID  +I +A  + +   IT+R
Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGERETRGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           I+ Q ISA+YDK ++LI  D E   +V D+WTF R+    +PNW L++T+   
Sbjct: 181 IISQLISATYDKADVLIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATESEH 233


>gi|27375753|ref|NP_767282.1| hypothetical protein blr0642 [Bradyrhizobium japonicum USDA 110]
 gi|27348891|dbj|BAC45907.1| blr0642 [Bradyrhizobium japonicum USDA 110]
          Length = 235

 Score =  289 bits (740), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 11/233 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG---- 65
           D   ++F  +  F+FL+LR VLG++TGNE+P     + +       ++ ++T+       
Sbjct: 2   DIYTIIFLALAVFIFLRLRSVLGQRTGNERPPFDHTAARNALGGAQDKNVVTMPGKVIDQ 61

Query: 66  -------KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
                  +     D    L   GT L + +  IV   + FDP+ F++ AR +YE IV +F
Sbjct: 62  APLAPTVEPTPPSDRWKGLTEPGTALAQGLDAIVDKDSTFDPRHFISGARGAYEMIVLAF 121

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
             G   A+  L+ S VY+ F+ ++  R+ NE+  ++  V ID  +++ A + + T  +TI
Sbjct: 122 ANGDRRALRDLLSSEVYESFDAAIKEREKNEQKTETRFVSIDKAELVGAELRDRTAQLTI 181

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           R V Q ISA+ DK   ++    +    + DIWTF R+I   +PNW L+ T   
Sbjct: 182 RFVSQMISATRDKAGNIVDGSADTVADITDIWTFARDITSRDPNWKLVGTGSA 234


>gi|86355677|ref|YP_467569.1| putative translocase transmembrane protein [Rhizobium etli CFN 42]
 gi|86279779|gb|ABC88842.1| putative translocase transmembrane protein [Rhizobium etli CFN 42]
          Length = 234

 Score =  289 bits (740), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 82/233 (35%), Positives = 126/233 (54%), Gaps = 6/233 (2%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER--GIITLG 63
           M S DF+ L F      +F QLR VLG++TGNEKP    +S +            ++TL 
Sbjct: 1   MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYSPREAAPPEAAEAGKVVTLP 60

Query: 64  K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
           +       +D   +I+     GT LN+ +R +      F PK+FLN AR +YE +V ++ 
Sbjct: 61  RRDATADDEDRFSAIDAFAAPGTPLNESLRALNKADPSFSPKEFLNGARMAYEMVVMAYA 120

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +G    ++ L+   VY  F  ++  R++  + VKS+ VGID  +I +A  + +   IT+R
Sbjct: 121 DGDRKTLKSLLSREVYDGFEAAIGEREARGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           IV Q ISA+YDK + LI  D E   +V D+WTF R+    +PNW L++T+   
Sbjct: 181 IVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATESEH 233


>gi|116249774|ref|YP_765612.1| hypothetical protein RL0008 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115254422|emb|CAK05496.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 234

 Score =  288 bits (738), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 81/233 (34%), Positives = 128/233 (54%), Gaps = 6/233 (2%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER--GIITLG 63
           M S DF+ L F      +F QLR VLG++TGNEKP    ++ +            ++TL 
Sbjct: 1   MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60

Query: 64  KG----KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
           +     + +D   +I+     GT LN+ +R +      F PK+FLN AR +YE IV ++ 
Sbjct: 61  RRDATTEDEDRFAAIDAFAAPGTPLNESLRALNKADPAFSPKEFLNGARMAYEMIVMAYA 120

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +G    ++ L+   VY  F+ ++  R++  + VKS+ VGID  +I +A  + +   IT+R
Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           I  Q ISA+YDK ++LI  D E   +V D+WTF R+    +PNW L++T+   
Sbjct: 181 IASQLISATYDKADVLIEGDAENVAEVNDVWTFARDTRSRDPNWKLVATESEH 233


>gi|227823867|ref|YP_002827840.1| putative import inner membrane translocase, subunit Tim44
           [Sinorhizobium fredii NGR234]
 gi|227342869|gb|ACP27087.1| putative import inner membrane translocase, subunit Tim44
           [Sinorhizobium fredii NGR234]
          Length = 233

 Score =  288 bits (738), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 128/231 (55%), Gaps = 6/231 (2%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYV--FSKRDERGIITLG 63
           M S DF+   F      +FLQLR VLG++TGNE+P    +S +       RD   ++ L 
Sbjct: 1   MGSFDFITFFFLIAAVVIFLQLRSVLGRRTGNERPPFDPYSPREAQGPEARDNGKVVQLP 60

Query: 64  K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
           +     + +    +I+     GT LN  +R +      F P +FLN A+ +YE IV +F 
Sbjct: 61  RRESTAEDESRYAAIDGFSKPGTPLNGQLRALSDADPSFQPAEFLNGAKMAYEMIVMAFA 120

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +G    ++ L+   VY+ F  +++ R++  + VKS+ VGI+   I++A +++    +T+R
Sbjct: 121 DGDRKTLKGLLSREVYEGFETAIAERETRGEVVKSTFVGIEKADIVHAELKDAEENVTVR 180

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           I+ Q ISA+YDK   LI  D +   +V D+WTF R+I   +PNW LI+T+ 
Sbjct: 181 IISQLISATYDKQGKLIDGDADSVAEVNDLWTFARDIRSRDPNWKLIATES 231


>gi|241206951|ref|YP_002978047.1| import inner membrane translocase subunit Tim44 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240860841|gb|ACS58508.1| import inner membrane translocase subunit Tim44 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 234

 Score =  287 bits (736), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 81/233 (34%), Positives = 128/233 (54%), Gaps = 6/233 (2%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER--GIITLG 63
           M S DF+ L F      +F QLR VLG++TGNEKP    ++ +            ++TL 
Sbjct: 1   MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60

Query: 64  KG----KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
           +     + +D   +I+     GT LN+ +R +      F PK+FLN AR +YE IV ++ 
Sbjct: 61  RRDATTEDEDRFAAIDAFAAPGTPLNESLRALNKADPAFTPKEFLNGARMAYEMIVMAYA 120

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +G    ++ L+   VY  F+ ++  R++  + VKS+ VGID  +I +A  + +   IT+R
Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           I  Q ISA+YDK ++LI  D E   +V D+WTF R+    +PNW L++T+   
Sbjct: 181 IASQLISATYDKADVLIEGDAENVAEVNDVWTFARDTRSRDPNWKLVATESEH 233


>gi|222147023|ref|YP_002547980.1| Membrane associated transporter protein [Agrobacterium vitis S4]
 gi|221734013|gb|ACM34976.1| Membrane associated transporter protein [Agrobacterium vitis S4]
          Length = 232

 Score =  287 bits (735), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 88/232 (37%), Positives = 133/232 (57%), Gaps = 5/232 (2%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKY--VFSKRDERGIITLG 63
           M S DF+ L F      +F QLR VLG++TGNEKP    F+G+        ++  ++TL 
Sbjct: 1   MGSNDFVTLFFLVAAVLIFWQLRSVLGRRTGNEKPPKDPFAGRPDAASPAAEDARVVTLP 60

Query: 64  KGKKKD---NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
           +  + D      +I+   P GT LN+ +R +V V   F PK+FLN AR +YE IV +F  
Sbjct: 61  RRDEADGEERQTAIDAYAPAGTPLNQQLRQVVEVDPSFVPKEFLNGARMAYEMIVTAFAA 120

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
           G   +++ L+   VY  F+ +++ R+   + +KS+ VGID  +I +A + +  V IT+R+
Sbjct: 121 GDRKSLKDLLSREVYDGFDAAITEREQRGEVMKSTFVGIDKAEITSAEVRDQEVQITVRL 180

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           V Q ISA+YD    +I  D E  G V DIWTF R+    +PNW LI+T+  +
Sbjct: 181 VSQLISATYDSQGAVIEGDAESVGDVNDIWTFARDTRSRDPNWKLIATESDQ 232


>gi|222084209|ref|YP_002542735.1| translocase transmembrane protein [Agrobacterium radiobacter K84]
 gi|221721657|gb|ACM24813.1| translocase transmembrane protein [Agrobacterium radiobacter K84]
          Length = 233

 Score =  287 bits (735), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 81/233 (34%), Positives = 134/233 (57%), Gaps = 6/233 (2%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYV---FSKRDERGIITL 62
           M + DF+ + F      +F QLR VLG++TGNEKP    +         +  D   ++TL
Sbjct: 1   MGANDFVTIFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYGSPDQATGPNAPDAGKVVTL 60

Query: 63  GKG---KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
            +    + +D   +I+   P GT LN  +R++      F PK+F+N AR +YE IV +F 
Sbjct: 61  PRRDATEDEDRFAAIDAFTPAGTPLNDSLRELNKADPSFSPKEFVNGARMAYEMIVMAFA 120

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +G  +A++ L+   VY+ F+ +++ R++  + VKS+ VGID   I++A +++    +T+R
Sbjct: 121 DGDRNALKGLLSREVYEGFDAAITDRETKGEKVKSTFVGIDKADIVSAEMKDTEATVTMR 180

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           IV Q ISA+YDK   LI  D E   ++ D+WTF R+    +PNW L++T+  +
Sbjct: 181 IVSQMISATYDKAGTLIDGDAETVAEISDVWTFARDSRSRDPNWKLVATESEQ 233


>gi|90421823|ref|YP_530193.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris BisB18]
 gi|90103837|gb|ABD85874.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris BisB18]
          Length = 233

 Score =  287 bits (735), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 9/230 (3%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
           D   ++F  +  F+FL+LR VLG+KTGNE+P     +   V   +D    +      +  
Sbjct: 2   DIYTIIFLALAVFIFLRLRNVLGQKTGNERPPFDRAARDVVRGAQDNVVPLPGAVVDQAP 61

Query: 70  NLDSINELFP---------IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
              S + + P          GT L + +  IV+  + FDP+ FL  AR +YE IV +F  
Sbjct: 62  QTPSADVVPPTDRWKGVAEPGTPLAQGLNAIVAQDSSFDPQHFLTGARGAYEMIVLAFAN 121

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
           G   A++ L+   VY  F   +  R+  E+  ++  V ID  ++++A   +    +T+R 
Sbjct: 122 GDRRALKDLLSPEVYDSFEAVIREREKQEQKTETRFVSIDKAELVSAEARDRAAQLTVRF 181

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           V Q I+ + DK   ++  +P+    + D+WTF R++   +PNW L+ T  
Sbjct: 182 VSQMITVTRDKTGAIVDGNPDKVADITDVWTFARDVGSRDPNWKLVGTGS 231


>gi|319780601|ref|YP_004140077.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317166489|gb|ADV10027.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 235

 Score =  287 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 123/235 (52%), Gaps = 8/235 (3%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGK---YVFSKRDERGIITL 62
           M   DF  + F      +F QLR VLG++TG+E+P    +S        + +    +++L
Sbjct: 1   MGFFDFGTIFFLIAAVVIFFQLRNVLGRRTGSERPPFDPYSAARTGDKDAAQKSENVVSL 60

Query: 63  G-----KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117
                      D   +I+      T LNK +R I      F+PK F++ A+ +YE IV +
Sbjct: 61  PRKRPPGEPAPDAYAAIDAFAKPDTDLNKGLRTIKDNDPSFEPKGFVDGAKMAYEMIVMA 120

Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
           + +G    ++ L+   VY  F  ++  R++  + ++SS VGID   I++A ++    ++T
Sbjct: 121 YADGDRKTLKNLLSREVYDGFVAAIGEREAKAEKIQSSFVGIDKADIVSAEMKGGEAHVT 180

Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           +RI+ + ISA+ DK   +I  DPE   +V D+WTF R+    +PNW L++T+  +
Sbjct: 181 LRIISELISATRDKAGAVIDGDPETVAEVKDVWTFARDTRSRDPNWKLVATEEED 235


>gi|260467422|ref|ZP_05813593.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
           opportunistum WSM2075]
 gi|259028818|gb|EEW30123.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
           opportunistum WSM2075]
          Length = 236

 Score =  287 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 124/236 (52%), Gaps = 9/236 (3%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGK---YVFSKRDERGIITL 62
           M   DF  + F      +F QLR VLG++TG+E+P    ++        + +    +++L
Sbjct: 1   MGFFDFGTIFFLIAAVVIFFQLRNVLGRRTGSERPPFDPYTAARTGDKDAAQKPENVVSL 60

Query: 63  G------KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116
                  +    D   +I+      T LNK +R I      FDPK F++ A+ +YE IV 
Sbjct: 61  PRKRLPGEPAAPDAYAAIDAFAKPDTDLNKGLRTIKDNDPSFDPKGFVDGAKMAYEMIVM 120

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           ++ +G    ++ L+   V+  F  ++  R++  + ++SS VGID   I++A ++    ++
Sbjct: 121 AYADGDRKTLKNLLSREVFDGFVAAIGEREAKSEKIQSSFVGIDKADIVSAEMKGGEAHV 180

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           T+RI+ + ISA+ DK   +I  DPE   +V D+WTF R+    +PNW L++T+  +
Sbjct: 181 TLRIISELISATRDKAGTVIDGDPETVAEVKDVWTFARDTRSRDPNWKLVATEEED 236


>gi|239833115|ref|ZP_04681444.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
           intermedium LMG 3301]
 gi|239825382|gb|EEQ96950.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
           intermedium LMG 3301]
          Length = 253

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 125/219 (57%), Gaps = 4/219 (1%)

Query: 18  FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73
                +FLQLR VLG++TGNEKP    +    S     +  +   +++L +   + +  +
Sbjct: 35  IAAVIIFLQLRNVLGRRTGNEKPPFDPYTSARSADAAPAGSETDNVVSLPRRTGEKDFTA 94

Query: 74  INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
           I++  P GT +N  +R I +    FDP  F++  + +YE IV SF +G    ++ L+   
Sbjct: 95  IDKAAPAGTPVNDGLRAIYAADPSFDPASFVDGVKIAYEMIVMSFADGDRKVLKNLLSKD 154

Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
           VY+ F  ++  R++  ++V+SS VGID  +I  A ++ +  ++T+ IV Q IS++YDKD 
Sbjct: 155 VYEGFVSAIDEREARGESVRSSFVGIDKAEITGAEMKGSEAHVTVNIVSQMISSTYDKDG 214

Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            LI  DPE   ++ D+WTF R+    +PNW L++T+  +
Sbjct: 215 KLIDGDPENVLEIKDLWTFARDTRSRDPNWKLVATEAED 253


>gi|192288736|ref|YP_001989341.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
           palustris TIE-1]
 gi|192282485|gb|ACE98865.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
           palustris TIE-1]
          Length = 235

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64
           D   ++F  +  F+FL+LR VLG++TG+E+P     + + +   + +  ++++       
Sbjct: 2   DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDNNVVSMPGTVIDQ 61

Query: 65  ------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
                        D    +    + L   +  I    + FD + F+  A+++YE IV +F
Sbjct: 62  APMAPNADVVPPSDRWKGIAEPDSELEHGLNAIAQNDSSFDAQHFITGAKSAYEMIVMAF 121

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
             G   ++  L+ S VY+ F+ ++  R+ N+  V++  V I+  ++I+A + + T  +T+
Sbjct: 122 ANGDRRSLRDLLSSEVYESFDAAIKDREKNDLKVETRFVSIEKAELISAELRDRTAMLTL 181

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           + V Q ISA+ DK   ++   P+    + D+WTF R+    +PNW L+ T  G
Sbjct: 182 KFVSQMISATRDKTGAVVDGSPDKVVDITDVWTFARDTSSRDPNWKLVGTGSG 234


>gi|118591473|ref|ZP_01548870.1| Calcium-binding EF-hand [Stappia aggregata IAM 12614]
 gi|118435801|gb|EAV42445.1| Calcium-binding EF-hand [Stappia aggregata IAM 12614]
          Length = 230

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 127/229 (55%), Gaps = 14/229 (6%)

Query: 18  FITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKR----DERGIITLGKGKKKDNLDS 73
            +  F+  +LR VLGK+TGNE+P    +S       R    D+  +I L     +D    
Sbjct: 2   GLAVFILFRLRSVLGKRTGNERPPFDPYSKPDQQRDRKNGNDQDNVIPLPNQPMQDAETV 61

Query: 74  ----------INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
                     I+++ P G+ LN  ++ I+SV   F+P+ FL  AR +YE IV +F +G  
Sbjct: 62  EDTGRGGDVVIDKVAPAGSALNSALKQILSVDRSFEPEPFLEGARAAYEMIVMAFADGDK 121

Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
            A++ L+   VY+ F  ++  R+   + ++S+ VGID  +I+ A+++ +T  +T++I  Q
Sbjct: 122 KALKNLLSREVYEGFVAAIDEREKRGETIESTFVGIDKAEIVEAALKNSTAQVTVKIHSQ 181

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            ISA+ DK+  ++  DP    +VIDIWTF R+    +PNW L++T+  E
Sbjct: 182 LISATRDKNGEVVDGDPAKVSEVIDIWTFARDTTSRDPNWKLVATESAE 230


>gi|15963761|ref|NP_384114.1| putative translocase transmembrane protein [Sinorhizobium meliloti
           1021]
 gi|307302564|ref|ZP_07582321.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
           meliloti BL225C]
 gi|307316105|ref|ZP_07595549.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
           meliloti AK83]
 gi|15072936|emb|CAC41395.1| Import inner membrane translocase subunit TIM44 [Sinorhizobium
           meliloti 1021]
 gi|306897945|gb|EFN28687.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
           meliloti AK83]
 gi|306903234|gb|EFN33824.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
           meliloti BL225C]
          Length = 233

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 131/231 (56%), Gaps = 6/231 (2%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYV---FSKRDERGIITL 62
           M S DF+   F      +FLQLR VLG++TG+E+P    +S + +      +D   ++ L
Sbjct: 1   MGSFDFITFFFLIAAVVIFLQLRSVLGRRTGSERPPFDPYSPRDIAQGPEAKDNGKVVQL 60

Query: 63  GK---GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
            +    + +    +I  +   GT LN  +R +     +F+P +FLN A+ +YE IV +F 
Sbjct: 61  PRRETAEDESRYAAIEIVAKAGTPLNAQLRAMTDADPNFNPAEFLNGAKMAYEMIVMAFA 120

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +G    ++ L+   VY+ F  +++ R++  + VKS+ VGID   I++A I++    IT+R
Sbjct: 121 DGDRKTLKGLLSREVYEGFEAAIAEREAKGEVVKSTFVGIDKADIVHAEIKDAEENITVR 180

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           I+ Q ISA+YDK   L+  D +   +V D+WTF R+I   +PNW LI+T+ 
Sbjct: 181 IISQLISATYDKQGKLVDGDADSVAEVNDLWTFARDIRSRDPNWKLIATES 231


>gi|91974901|ref|YP_567560.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris BisB5]
 gi|91681357|gb|ABE37659.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris BisB5]
          Length = 235

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 116/234 (49%), Gaps = 11/234 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64
           D   ++F  +  F+FL+LR VLG++TG+E+P     + + +   + +  ++ +       
Sbjct: 2   DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDNNVVPMPGTVIDQ 61

Query: 65  ------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
                        D    +    + L   +  ++   + FD   FL  A+++YE IV +F
Sbjct: 62  SPTAPNADVVPPSDRWKGIAEPDSPLAHGLNAVLVQDSSFDANHFLTGAKSAYEMIVMAF 121

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
             G   A+  L+ + VY  F+ ++  R+ NE+  ++  V ID  +++ A + E+T  +T+
Sbjct: 122 ANGDRRALRDLLSTEVYDSFDAAIKDREKNERKTETRFVAIDKAELLGAEVREHTAQLTV 181

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           + V Q IS + DK   ++  +P+    + D+WTF R+I   +PNW L+ T  G 
Sbjct: 182 KFVSQMISVTRDKAGAIVDGNPDKVADITDVWTFARDISSRDPNWKLVGTGSGH 235


>gi|325291461|ref|YP_004277325.1| hypothetical protein AGROH133_02812 [Agrobacterium sp. H13-3]
 gi|325059314|gb|ADY63005.1| hypothetical protein AGROH133_02812 [Agrobacterium sp. H13-3]
          Length = 232

 Score =  286 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 87/232 (37%), Positives = 134/232 (57%), Gaps = 5/232 (2%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKR--DERGIITLG 63
           M   DF+ L F      +FLQLR VLG++TGNEKP    ++ + V      D+  ++TL 
Sbjct: 1   MGFSDFITLFFLVAAVLIFLQLRSVLGRRTGNEKPPFDPYTPRDVAKGPVTDDNKVVTLP 60

Query: 64  ---KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
              + + ++     + L P+ T LN  +R++++    F PK+FLN AR +YE IV  F +
Sbjct: 61  KRSEAEDENRFAEADALAPVDTALNTSLRELMTKDPTFRPKEFLNGARMAYEMIVMGFAD 120

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
           G    ++ L+   V+  F  ++S R+S  + VKS+ VGI+   I  A I ++   IT+RI
Sbjct: 121 GDRKTLKNLLSKEVFDGFEAAISERESRGEVVKSTFVGIEKADITQAGIRDSEEQITLRI 180

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           V Q ISA+YDKD  L+  DP+   +V DIWTF R++   +PNW LI+T+  +
Sbjct: 181 VSQLISATYDKDGKLVDGDPDAVAEVDDIWTFSRDVRSRDPNWKLIATESEQ 232


>gi|110635813|ref|YP_676021.1| import inner membrane translocase, subunit Tim44 [Mesorhizobium sp.
           BNC1]
 gi|110286797|gb|ABG64856.1| import inner membrane translocase, subunit Tim44 [Chelativorans sp.
           BNC1]
          Length = 235

 Score =  286 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 75/235 (31%), Positives = 127/235 (54%), Gaps = 8/235 (3%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDE-----RGII 60
           M+  DF  + F      +F QLR VLG++TG+E+P    ++         E       ++
Sbjct: 1   MEFFDFGTIFFLVAAVVIFFQLRNVLGRRTGSERPPFDPYTAGRSRPAEAEKSVKNDTVV 60

Query: 61  TLGKGK---KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117
            L + K    ++  + I+++   GT LN+ +R I      FDP  F++ A+ +YE IV +
Sbjct: 61  ALPRRKGLVDEERYNIIDKVAQPGTELNRGLRAIKDADPSFDPNTFVDGAKLAYEMIVMA 120

Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
           F +G    ++ L+   VY+ F  ++  R+   + ++SS VGID   II+A ++ +  ++T
Sbjct: 121 FADGDRRTLKNLLSREVYEGFVSAIDERERRSEKIESSFVGIDKATIISAEMKGSEAHVT 180

Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           +RIV + ISA+ D    +I  DPE   +V DIWTF R+    +PNW L++T+  E
Sbjct: 181 LRIVSELISATRDSGGSIIDGDPETVAEVKDIWTFARDTRSRDPNWKLVATEAEE 235


>gi|115522403|ref|YP_779314.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris BisA53]
 gi|115516350|gb|ABJ04334.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris BisA53]
          Length = 233

 Score =  286 bits (731), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 113/232 (48%), Gaps = 9/232 (3%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK- 68
           D   ++F  +  F+FL+LR VLG++TG+E+P     +   +   ++   +          
Sbjct: 2   DIYTIIFLALAVFIFLRLRNVLGQRTGDERPPYDRAARDLLRGSQEGNVVPMPSPSIDPT 61

Query: 69  --------DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
                      D    +    + L   +  I +  + FD + FL+ AR +YE IV +F  
Sbjct: 62  LAPSADVTPPSDRWKSVAAPDSPLEHGLNAIAAHDSGFDAQHFLSGARGAYEMIVLAFAN 121

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
           G   A++ L+ S VY  F  ++  R+ N+   ++  V ID  +++ A + + +  +T+R 
Sbjct: 122 GDRRALKDLLSSEVYDSFEAAIREREKNDHKTETRFVSIDKAELVTAEVRDRSAQLTVRF 181

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           V Q I+ + DK   ++  +P+    + D+WTF R++   +PNW L+ T  G+
Sbjct: 182 VSQMITVTRDKTGAIVDGNPDKVADITDVWTFARDVASRDPNWKLVGTGSGQ 233


>gi|150398408|ref|YP_001328875.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
           medicae WSM419]
 gi|150029923|gb|ABR62040.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
           medicae WSM419]
          Length = 234

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 80/232 (34%), Positives = 131/232 (56%), Gaps = 7/232 (3%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYV---FSKRDERGIITL 62
           M S DF+   F      +FLQLR VLG++TG+E+P    +S + +      +D   ++ L
Sbjct: 1   MGSFDFITFFFLIAAVVIFLQLRSVLGRRTGSERPPFDPYSSRDIAQGPEAKDNGKVVQL 60

Query: 63  GK----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
            +     + +     I  +   GT LN  +R +     +F+P +FLN A+ +YE IV +F
Sbjct: 61  PRRDGAAEDESRYAEIETVAKAGTPLNAQLRAVTDADPNFNPVEFLNGAKMAYEMIVMAF 120

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
            +G    ++ L+   VY+ F  +++ R++  + VKS+ VGID   I++A I+++   IT+
Sbjct: 121 ADGDRKTLKGLLSREVYEGFEAAIAERENKGEVVKSTFVGIDKADIVHAEIKDSEENITV 180

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           RI+ Q ISA+YDK   L+  D E   +V D+WTF R+I   +PNW LI+T+ 
Sbjct: 181 RIISQLISATYDKQGKLVDGDAESVAEVNDLWTFSRDIRSRDPNWKLIATES 232


>gi|307943366|ref|ZP_07658710.1| import inner membrane translocase subunit Tim44 [Roseibium sp.
           TrichSKD4]
 gi|307772996|gb|EFO32213.1| import inner membrane translocase subunit Tim44 [Roseibium sp.
           TrichSKD4]
          Length = 244

 Score =  285 bits (729), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 133/240 (55%), Gaps = 16/240 (6%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDE------RGIITL 62
            D   ++F  +  F+  +L+ VLGK+TGNE+P    +S +    +  +        +I +
Sbjct: 5   FDVYNIIFLGLAVFILFRLKSVLGKRTGNERPPFDPYSKQDDAGQSSQGGKSQSDNVIPM 64

Query: 63  GKG----------KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
                         +++    I++L P GT LN+ ++ I+SV   F+P++F+  A  +YE
Sbjct: 65  PGQESYQETGIREPEENGEVVIDKLAPQGTALNEALKQILSVDRTFEPREFIEGASAAYE 124

Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
            IV +F EG    +++L+   V+  F  ++  R+  ++ ++S+ VGID  +I+ A++++ 
Sbjct: 125 MIVTAFAEGDRKTLKQLLSKDVFDGFIMAIDEREKRDEVIESTFVGIDKAEIVEAALKDG 184

Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           T  +T+++  Q ISA+ DKD  ++  DP    +VIDIWTF R+    +PNW L++T+  E
Sbjct: 185 TAQVTVKVQSQLISATCDKDGEVVDGDPNKVSEVIDIWTFARDTGSRDPNWKLVATESAE 244


>gi|316931716|ref|YP_004106698.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
           palustris DX-1]
 gi|315599430|gb|ADU41965.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
           palustris DX-1]
          Length = 258

 Score =  285 bits (729), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 119/233 (51%), Gaps = 11/233 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64
           D   ++F  +  F+FL+LR VLG++TGNE+P     + + + S + +  +I++       
Sbjct: 25  DIYTIIFLALAVFIFLRLRNVLGQRTGNERPPFDRAAARDMISGKQDNNVISMPGTVIDQ 84

Query: 65  ------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
                        D    +    + L   +  I    + FD + F++ A+++YE IV +F
Sbjct: 85  APIAPNADVVPPSDRWKGIAEPDSELEHGLNAIAQHDSSFDARHFVDGAKSAYEMIVMAF 144

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
             G   ++  L+ S VY+ F+ ++  R+ N+  V+S  V I+  ++I+A + + T  +T+
Sbjct: 145 ANGDRRSLRDLLSSEVYESFDAAIKDREKNDLKVESRFVAIEKAELISAELRDRTAMLTL 204

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           + V Q ISA+ DK   ++   P+    + D+WTF R+    +PNW L+ T  G
Sbjct: 205 KFVSQMISATRDKTGAVVDGSPDKVTDITDVWTFARDTSSRDPNWKLVGTGSG 257


>gi|209883544|ref|YP_002287401.1| import inner membrane translocase, subunit Tim44 [Oligotropha
           carboxidovorans OM5]
 gi|209871740|gb|ACI91536.1| import inner membrane translocase, subunit Tim44 [Oligotropha
           carboxidovorans OM5]
          Length = 234

 Score =  284 bits (727), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 114/232 (49%), Gaps = 10/232 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
           D   ++F  +  F+FL+LR VLG++TG+E+P     +     S  D   +   G    + 
Sbjct: 2   DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRITRDMARSGNDNNVVKMPGTTIDQT 61

Query: 70  NLDSINELFP----------IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
            L    +  P            T L   + ++ +    F+ + F++ A+++YE IV +F 
Sbjct: 62  PLAPAADPIPAQDRWKGIAEPDTPLATGLDEVAAADPSFNAQHFVSGAKSAYEMIVQAFA 121

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
            G    ++ L+ + VY  F   +  R+   + V++    ID   +++A + +   ++T+R
Sbjct: 122 SGDRRMLKDLLSAEVYDGFEAVIKGREQRGEKVETRFASIDKAALVSAGVRDRIAHLTVR 181

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
            V Q I+ + DKD  +I  +PE    V D+WTF R++   +PNW L+ T+ G
Sbjct: 182 FVSQMITVTRDKDGAVIDGNPEKLTDVTDVWTFSRDVSSRDPNWKLVGTESG 233


>gi|92115749|ref|YP_575478.1| import inner membrane translocase, subunit Tim44 [Nitrobacter
           hamburgensis X14]
 gi|91798643|gb|ABE61018.1| import inner membrane translocase, subunit Tim44 [Nitrobacter
           hamburgensis X14]
          Length = 234

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 67/233 (28%), Positives = 123/233 (52%), Gaps = 10/233 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
           D   ++F  +  F+FL+LR VLG++TG+E+P     + + +   +D+  +   G    + 
Sbjct: 2   DIYTIIFLALAVFIFLRLRSVLGQRTGSERPPYDRATREVLHGTQDKNVVPMAGPVIDQA 61

Query: 70  NLDSINE----------LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
           +     +          L   GT L   +  I +  + FDPK F++ AR++YE IV +F 
Sbjct: 62  SSAPTADAASTPDRWKNLAEPGTPLALGLDAIAAHDSSFDPKHFISGARSAYEMIVLAFA 121

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
            G    ++ L+ S VY+ F+ ++  R+  E+  ++  V ID +++I A + ++   +T+R
Sbjct: 122 NGDRRTLKDLLSSDVYESFDAAIKDREKLEQKTETRFVSIDKVELIGAELRDSAEQLTVR 181

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            + Q IS + DK   ++  +PE    + D+WTF R+IP  +PNW L+ T   +
Sbjct: 182 FISQMISMTRDKTGAIVDGNPEKISDITDVWTFARDIPSRDPNWKLVGTGSTD 234


>gi|86747526|ref|YP_484022.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris HaA2]
 gi|86570554|gb|ABD05111.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris HaA2]
          Length = 235

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 114/230 (49%), Gaps = 11/230 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64
           D   ++F  +  F+FL+LR VLG++TG+E+P     + + +   + +  ++++       
Sbjct: 2   DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDTNVVSMPGSVIDQ 61

Query: 65  ------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
                        D    +    + L   +  + +  + FD   FL+ A+ +YE IV +F
Sbjct: 62  SPIAPSADVVPPSDRWKGIAEPDSPLEHGLNAVFTQDSSFDANHFLSGAKGAYEMIVMAF 121

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
             G   A++ L+ S VY+ F  ++  R+ NE   ++  V I+  +++ A + ++   +T+
Sbjct: 122 ANGDRRALKDLLSSEVYESFEAAIKDREKNELKTETRFVAIEKAELLGAEVRDHVAQLTV 181

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           + V Q IS + DK   ++   P+    + D+WTF R+I   +PNW L+ T
Sbjct: 182 KFVSQMISVTRDKAGAVVDGSPDKVADITDVWTFARDISSRDPNWKLVGT 231


>gi|23502922|ref|NP_699049.1| hypothetical protein BR2074 [Brucella suis 1330]
 gi|82700829|ref|YP_415403.1| calcium-binding EF-hand [Brucella melitensis biovar Abortus 2308]
 gi|225626454|ref|ZP_03784493.1| import inner membrane translocase subunit Tim44 [Brucella ceti str.
           Cudo]
 gi|237816425|ref|ZP_04595418.1| Tim44-like domain protein [Brucella abortus str. 2308 A]
 gi|256370472|ref|YP_003107983.1| hypothetical protein BMI_I2096 [Brucella microti CCM 4915]
 gi|23348955|gb|AAN30964.1| conserved hypothetical protein [Brucella suis 1330]
 gi|82616930|emb|CAJ12031.1| Calcium-binding EF-hand [Brucella melitensis biovar Abortus 2308]
 gi|225618111|gb|EEH15154.1| import inner membrane translocase subunit Tim44 [Brucella ceti str.
           Cudo]
 gi|237788492|gb|EEP62707.1| Tim44-like domain protein [Brucella abortus str. 2308 A]
 gi|256000635|gb|ACU49034.1| hypothetical protein BMI_I2096 [Brucella microti CCM 4915]
          Length = 235

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 124/219 (56%), Gaps = 4/219 (1%)

Query: 18  FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73
                +FLQLR VLG++TGNEKP    +    S     +  +   +++L +   + +  +
Sbjct: 17  IAAVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTA 76

Query: 74  INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
           I+++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   
Sbjct: 77  IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKD 136

Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
           VY+ F  ++  R+   + V+SS VGID   I  A ++ +  ++T+ IV Q IS++ D+D 
Sbjct: 137 VYEGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDG 196

Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            +I  DP+   ++ D+WTF R+    +PNW L++T+  +
Sbjct: 197 KVIDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 235


>gi|161619988|ref|YP_001593875.1| import inner membrane translocase subunit Tim44 [Brucella canis
           ATCC 23365]
 gi|163844092|ref|YP_001628496.1| import inner membrane translocase subunit Tim44 [Brucella suis ATCC
           23445]
 gi|189025131|ref|YP_001935899.1| Calcium-binding EF-hand [Brucella abortus S19]
 gi|254690207|ref|ZP_05153461.1| Calcium-binding EF-hand [Brucella abortus bv. 6 str. 870]
 gi|254694697|ref|ZP_05156525.1| Calcium-binding EF-hand [Brucella abortus bv. 3 str. Tulya]
 gi|254696324|ref|ZP_05158152.1| Calcium-binding EF-hand [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700706|ref|ZP_05162534.1| Calcium-binding EF-hand [Brucella suis bv. 5 str. 513]
 gi|254705077|ref|ZP_05166905.1| Calcium-binding EF-hand [Brucella suis bv. 3 str. 686]
 gi|254709052|ref|ZP_05170863.1| Calcium-binding EF-hand [Brucella pinnipedialis B2/94]
 gi|254713521|ref|ZP_05175332.1| Calcium-binding EF-hand [Brucella ceti M644/93/1]
 gi|254716123|ref|ZP_05177934.1| Calcium-binding EF-hand [Brucella ceti M13/05/1]
 gi|254718117|ref|ZP_05179928.1| Calcium-binding EF-hand [Brucella sp. 83/13]
 gi|254731240|ref|ZP_05189818.1| Calcium-binding EF-hand [Brucella abortus bv. 4 str. 292]
 gi|256030577|ref|ZP_05444191.1| Calcium-binding EF-hand [Brucella pinnipedialis M292/94/1]
 gi|256060039|ref|ZP_05450221.1| Calcium-binding EF-hand [Brucella neotomae 5K33]
 gi|260169483|ref|ZP_05756294.1| Calcium-binding EF-hand [Brucella sp. F5/99]
 gi|260546180|ref|ZP_05821920.1| calcium-binding EF-hand protein [Brucella abortus NCTC 8038]
 gi|260567455|ref|ZP_05837925.1| calcium-binding EF-hand protein [Brucella suis bv. 4 str. 40]
 gi|260755747|ref|ZP_05868095.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 6 str. 870]
 gi|260758971|ref|ZP_05871319.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 4 str. 292]
 gi|260760695|ref|ZP_05873038.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|261215024|ref|ZP_05929305.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 3 str. Tulya]
 gi|261217893|ref|ZP_05932174.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           M13/05/1]
 gi|261316550|ref|ZP_05955747.1| import inner membrane translocase subunit Tim44 [Brucella
           pinnipedialis B2/94]
 gi|261321257|ref|ZP_05960454.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           M644/93/1]
 gi|261324015|ref|ZP_05963212.1| import inner membrane translocase subunit Tim44 [Brucella neotomae
           5K33]
 gi|261751215|ref|ZP_05994924.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
           5 str. 513]
 gi|261755779|ref|ZP_05999488.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
           3 str. 686]
 gi|261759008|ref|ZP_06002717.1| calcium-binding EF-hand protein [Brucella sp. F5/99]
 gi|265983069|ref|ZP_06095804.1| import inner membrane translocase subunit Tim44 [Brucella sp.
           83/13]
 gi|265987624|ref|ZP_06100181.1| import inner membrane translocase subunit Tim44 [Brucella
           pinnipedialis M292/94/1]
 gi|306839744|ref|ZP_07472546.1| import inner membrane translocase subunit Tim44 [Brucella sp. NF
           2653]
 gi|306842810|ref|ZP_07475450.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO2]
 gi|306843493|ref|ZP_07476094.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO1]
 gi|161336799|gb|ABX63104.1| import inner membrane translocase subunit Tim44 [Brucella canis
           ATCC 23365]
 gi|163674815|gb|ABY38926.1| import inner membrane translocase subunit Tim44 [Brucella suis ATCC
           23445]
 gi|189020703|gb|ACD73425.1| Calcium-binding EF-hand [Brucella abortus S19]
 gi|260096287|gb|EEW80163.1| calcium-binding EF-hand protein [Brucella abortus NCTC 8038]
 gi|260156973|gb|EEW92053.1| calcium-binding EF-hand protein [Brucella suis bv. 4 str. 40]
 gi|260669289|gb|EEX56229.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 4 str. 292]
 gi|260671127|gb|EEX57948.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260675855|gb|EEX62676.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 6 str. 870]
 gi|260916631|gb|EEX83492.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 3 str. Tulya]
 gi|260922982|gb|EEX89550.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           M13/05/1]
 gi|261293947|gb|EEX97443.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           M644/93/1]
 gi|261295773|gb|EEX99269.1| import inner membrane translocase subunit Tim44 [Brucella
           pinnipedialis B2/94]
 gi|261299995|gb|EEY03492.1| import inner membrane translocase subunit Tim44 [Brucella neotomae
           5K33]
 gi|261738992|gb|EEY26988.1| calcium-binding EF-hand protein [Brucella sp. F5/99]
 gi|261740968|gb|EEY28894.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
           5 str. 513]
 gi|261745532|gb|EEY33458.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
           3 str. 686]
 gi|264659821|gb|EEZ30082.1| import inner membrane translocase subunit Tim44 [Brucella
           pinnipedialis M292/94/1]
 gi|264661661|gb|EEZ31922.1| import inner membrane translocase subunit Tim44 [Brucella sp.
           83/13]
 gi|306276184|gb|EFM57884.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO1]
 gi|306287004|gb|EFM58515.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO2]
 gi|306405204|gb|EFM61481.1| import inner membrane translocase subunit Tim44 [Brucella sp. NF
           2653]
          Length = 231

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 124/219 (56%), Gaps = 4/219 (1%)

Query: 18  FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73
                +FLQLR VLG++TGNEKP    +    S     +  +   +++L +   + +  +
Sbjct: 13  IAAVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTA 72

Query: 74  INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
           I+++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   
Sbjct: 73  IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKD 132

Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
           VY+ F  ++  R+   + V+SS VGID   I  A ++ +  ++T+ IV Q IS++ D+D 
Sbjct: 133 VYEGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDG 192

Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            +I  DP+   ++ D+WTF R+    +PNW L++T+  +
Sbjct: 193 KVIDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231


>gi|75674306|ref|YP_316727.1| hypothetical protein Nwi_0107 [Nitrobacter winogradskyi Nb-255]
 gi|74419176|gb|ABA03375.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 234

 Score =  282 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 115/232 (49%), Gaps = 10/232 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL------- 62
           D   ++F  +  F+FL+LR VLG++TG+E+P     + + +   +D   +          
Sbjct: 2   DIYTIIFLALAVFIFLRLRSVLGQRTGSERPPYDRATREVLGGTQDNNVVPVPGTVINQS 61

Query: 63  ---GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
                       D    +   GT L   +  I +  + FDP  FL+ AR++YE IV +F 
Sbjct: 62  SAAPSADVGGAADRWKSVAEPGTPLALGLDAIAAQDSSFDPAHFLSGARSAYEMIVLAFA 121

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
            G    ++ L+ S VY+ F+ ++  R+  E+  ++  V ID +++I A + +    +T+R
Sbjct: 122 NGDRRTLKDLLSSDVYESFDAAIKDRERLEQKTETRFVSIDKVELIGAEVRDGAEQLTVR 181

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
            + Q IS + DK   ++  +PE    + D+WTF R+I   +PNW L+ T   
Sbjct: 182 FISQMISVTRDKTGAIVDGNPEKISDITDVWTFARDISSRDPNWKLVGTGSA 233


>gi|256112399|ref|ZP_05453320.1| transporter [Brucella melitensis bv. 3 str. Ether]
 gi|265993836|ref|ZP_06106393.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis bv. 3 str. Ether]
 gi|262764817|gb|EEZ10738.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis bv. 3 str. Ether]
          Length = 231

 Score =  282 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 123/219 (56%), Gaps = 4/219 (1%)

Query: 18  FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73
                +FLQLR VLG++TGNEKP    +    S     +      +++L +   + +  +
Sbjct: 13  IAAVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGGPDNVVSLPRRANEKDYTA 72

Query: 74  INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
           I+++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   
Sbjct: 73  IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKD 132

Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
           VY+ F  ++  R+   + V+SS VGID   I  A ++ +  ++T+ IV Q IS++ D+D 
Sbjct: 133 VYEGFVAAIDEREKQGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDG 192

Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            +I  DP+   ++ D+WTF R+    +PNW L++T+  +
Sbjct: 193 KVIDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231


>gi|225853505|ref|YP_002733738.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis ATCC 23457]
 gi|256045678|ref|ZP_05448556.1| transporter [Brucella melitensis bv. 1 str. Rev.1]
 gi|256263013|ref|ZP_05465545.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis bv. 2 str. 63/9]
 gi|260562979|ref|ZP_05833465.1| calcium-binding EF-hand protein [Brucella melitensis bv. 1 str.
           16M]
 gi|265992099|ref|ZP_06104656.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|225641870|gb|ACO01784.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis ATCC 23457]
 gi|260152995|gb|EEW88087.1| calcium-binding EF-hand protein [Brucella melitensis bv. 1 str.
           16M]
 gi|263003165|gb|EEZ15458.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263092886|gb|EEZ17061.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis bv. 2 str. 63/9]
 gi|326410072|gb|ADZ67137.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis M28]
 gi|326539788|gb|ADZ88003.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis M5-90]
          Length = 231

 Score =  282 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 123/219 (56%), Gaps = 4/219 (1%)

Query: 18  FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73
                +FLQLR VLG++TGNEKP    +    S     +      +++L +   + +  +
Sbjct: 13  IAAVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGGPDNVVSLPRRANEKDYTA 72

Query: 74  INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
           I+++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   
Sbjct: 73  IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKD 132

Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
           VY+ F  ++  R+   + V+SS VGID   I  A ++ +  ++T+ IV Q IS++ D+D 
Sbjct: 133 VYEGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDG 192

Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            +I  DP+   ++ D+WTF R+    +PNW L++T+  +
Sbjct: 193 KVIDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231


>gi|62290918|ref|YP_222711.1| hypothetical protein BruAb1_2049 [Brucella abortus bv. 1 str.
           9-941]
 gi|62197050|gb|AAX75350.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
          Length = 231

 Score =  281 bits (720), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 124/219 (56%), Gaps = 4/219 (1%)

Query: 18  FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73
                +FLQLR VLG++TGNEKP    +    S     +  +   +++L +   + +  +
Sbjct: 13  IAAVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTA 72

Query: 74  INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
           I+++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   
Sbjct: 73  IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKD 132

Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
           VY+ F  ++  R+   + V+SS VGID   I  A ++ +  ++T+ IV Q IS++ D+D 
Sbjct: 133 VYEGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDG 192

Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            +I  DP+   ++ D+WTF R+    +PNW L++T+  +
Sbjct: 193 KVIDGDPDNMVEIKDLWTFARDTNSRDPNWKLVATEAED 231


>gi|297247302|ref|ZP_06931020.1| hypothetical protein BAYG_00201 [Brucella abortus bv. 5 str. B3196]
 gi|297174471|gb|EFH33818.1| hypothetical protein BAYG_00201 [Brucella abortus bv. 5 str. B3196]
          Length = 235

 Score =  281 bits (720), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 124/219 (56%), Gaps = 4/219 (1%)

Query: 18  FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73
                +FLQLR VLG++TGNEKP    +    S     +  +   +++L +   + +  +
Sbjct: 17  IAAVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTA 76

Query: 74  INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
           I+++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   
Sbjct: 77  IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKD 136

Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
           VY+ F  ++  R+   + V+SS VGID   I  A ++ +  ++T+ IV Q IS++ D+D 
Sbjct: 137 VYEGFVAAIDEREKWGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDG 196

Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            +I  DP+   ++ D+WTF R+    +PNW L++T+  +
Sbjct: 197 KVIDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 235


>gi|294851303|ref|ZP_06791976.1| hypothetical protein BAZG_00203 [Brucella sp. NVSL 07-0026]
 gi|294819892|gb|EFG36891.1| hypothetical protein BAZG_00203 [Brucella sp. NVSL 07-0026]
          Length = 235

 Score =  281 bits (720), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 123/219 (56%), Gaps = 4/219 (1%)

Query: 18  FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73
                +FLQLR VLG +TGNEKP    +    S     +  +   +++L +   + +  +
Sbjct: 17  IAAVIIFLQLRNVLGCRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTA 76

Query: 74  INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
           I+++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   
Sbjct: 77  IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKD 136

Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
           VY+ F  ++  R+   + V+SS VGID   I  A ++ +  ++T+ IV Q IS++ D+D 
Sbjct: 137 VYEGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDG 196

Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            +I  DP+   ++ D+WTF R+    +PNW L++T+  +
Sbjct: 197 KVIDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 235


>gi|158426224|ref|YP_001527516.1| mitochondrial import inner membrane translocase [Azorhizobium
           caulinodans ORS 571]
 gi|158333113|dbj|BAF90598.1| mitochondrial import inner membrane translocase [Azorhizobium
           caulinodans ORS 571]
          Length = 279

 Score =  281 bits (719), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 117/235 (49%), Gaps = 12/235 (5%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI--ITLGKGKK 67
           D   ++F  +  F+F++LR VLG++TG E+P    F+ +   +   +  +          
Sbjct: 45  DIYTIIFLALAVFIFVRLRSVLGQRTGKERPPYDPFTPRPPAAPSSDNVVSLPERVGDAP 104

Query: 68  KDNLDSINELFP----------IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117
           +     +++  P           G+ L + +  I ++  DFD K F+  A+++YE IV +
Sbjct: 105 QRPTAPVSQPLPGTFRWKGVTEEGSPLAEALDQIAAIEPDFDAKHFVEGAKSAYEMIVLA 164

Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
           F  G    ++ L+   V+  F  ++S R+   + ++S  V I+  +II AS+   T  +T
Sbjct: 165 FAAGDRRTLKDLLSKDVFDGFVAAISEREGRGETMESRFVAIEKAEIIEASVRGRTGQVT 224

Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           +R V + ISA+  +D  ++    +    V D+WTF R +   +PNW L++T+  +
Sbjct: 225 LRFVSKIISATRSRDGAVVDGSADTVADVTDVWTFARELGARDPNWKLVATEAAQ 279


>gi|256158573|ref|ZP_05456463.1| calcium-binding EF-hand [Brucella ceti M490/95/1]
 gi|256253984|ref|ZP_05459520.1| calcium-binding EF-hand [Brucella ceti B1/94]
 gi|261221124|ref|ZP_05935405.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           B1/94]
 gi|265997084|ref|ZP_06109641.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           M490/95/1]
 gi|260919708|gb|EEX86361.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           B1/94]
 gi|262551552|gb|EEZ07542.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           M490/95/1]
          Length = 231

 Score =  281 bits (719), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 124/219 (56%), Gaps = 4/219 (1%)

Query: 18  FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73
                +FLQLR VLG++TGNEKP    +    S     +  +   +++L +   + +  +
Sbjct: 13  IAAVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTA 72

Query: 74  INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
           I+++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   
Sbjct: 73  IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKD 132

Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
           VY+ F  ++  R+   + V+SS VGID   I  A ++ +  ++T+ IV Q IS++ D+D 
Sbjct: 133 VYEGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQIISSTLDRDG 192

Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            +I  DP+   ++ D+WTF R+    +PNW L++T+  +
Sbjct: 193 KVIDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231


>gi|256258462|ref|ZP_05463998.1| calcium-binding EF-hand [Brucella abortus bv. 9 str. C68]
 gi|260884773|ref|ZP_05896387.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 9 str. C68]
 gi|260874301|gb|EEX81370.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 9 str. C68]
          Length = 231

 Score =  280 bits (718), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 124/219 (56%), Gaps = 4/219 (1%)

Query: 18  FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73
                +FLQLR VLG++TGNEKP    +    S     +  +   +++L +   + +  +
Sbjct: 13  IAAVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTA 72

Query: 74  INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
           I+++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   
Sbjct: 73  IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKD 132

Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
           VY+ F  ++  R+   + V+SS VGID   I  A ++ +  ++T+ IV Q IS++ D+D 
Sbjct: 133 VYEGFVAAIDEREKWGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDG 192

Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            +I  DP+   ++ D+WTF R+    +PNW L++T+  +
Sbjct: 193 KVIDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231


>gi|148559170|ref|YP_001259879.1| hypothetical protein BOV_1994 [Brucella ovis ATCC 25840]
 gi|148370427|gb|ABQ60406.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
          Length = 231

 Score =  280 bits (717), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 123/219 (56%), Gaps = 4/219 (1%)

Query: 18  FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73
                +FLQLR VLG++TGNEKP    +    S     +  +   +++L +   + +  +
Sbjct: 13  IAAVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTA 72

Query: 74  INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
           I+++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   
Sbjct: 73  IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDRKVLKNLLSKD 132

Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
           VY+ F  ++  R+   + V+SS VGID   I  A ++ +  ++T+ IV Q IS+  D+D 
Sbjct: 133 VYEGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSILDRDG 192

Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            +I  DP+   ++ D+WTF R+    +PNW L++T+  +
Sbjct: 193 KVIDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231


>gi|85714085|ref|ZP_01045074.1| hypothetical protein NB311A_08013 [Nitrobacter sp. Nb-311A]
 gi|85699211|gb|EAQ37079.1| hypothetical protein NB311A_08013 [Nitrobacter sp. Nb-311A]
          Length = 234

 Score =  280 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 117/232 (50%), Gaps = 10/232 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL------- 62
           D   ++F  +  F+FL+LR VLG++TG+E+P     + + +   +D+  +          
Sbjct: 2   DIYTIIFLALAVFIFLRLRSVLGQRTGSERPPYDGATREILRGAQDKNVVPVPGTVINQS 61

Query: 63  ---GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
                     + D   +L   GT L   +  I +  + FDP  FL+ AR++YE IV +F 
Sbjct: 62  SATPTADVGPSADRWKDLTEPGTALALGLDAIAAQDSSFDPGHFLSGARSAYEMIVLAFA 121

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
            G    ++ L+ S VY+ F+ ++  R+  E+  ++  V ID +++I A + +    +T+R
Sbjct: 122 NGDRRTLKDLLSSDVYESFDAAIKDRERLEQKTETRFVSIDKVELIGAELRDGAEQLTVR 181

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
            + Q IS + DK   ++  +PE    + D+WTF R I   +PNW L+ T   
Sbjct: 182 FISQMISVTRDKTGAIVDGNPERISDITDVWTFAREISSRDPNWKLVGTGSA 233


>gi|319407969|emb|CBI81623.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 230

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 128/228 (56%), Gaps = 4/228 (1%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGK 64
            D ++++   I   VF+QLR VLGK+TG E+P    +SG    +      D         
Sbjct: 3   FDVVLVIALVIMVVVFMQLRNVLGKRTGFERPPFDPYSGCSKKQIETETVDHSLSFPHQA 62

Query: 65  GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
             +K +   I+ + P G+ LN  +R I    ++F P+ F+N  + +YE I+ +F +G   
Sbjct: 63  NARKKDFSEIDAIAPEGSALNDGLRAICQADSNFSPQFFVNGVQIAYEMIMTAFAQGDRD 122

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
            ++KL+   V++ F  ++  R+  E+ V+ + VGI+ ++ + A +++N  ++T+RIV + 
Sbjct: 123 QLKKLLSQDVFESFCAAIERREKREEKVEFTFVGINKVEFVAAEMQKNEEFLTVRIVSEI 182

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           IS +Y+K N  I  DPE   ++ D+WTFVRN    +PNW L +T+ G+
Sbjct: 183 ISVTYNKQNECIDGDPEAIVEIKDVWTFVRNSLSQDPNWKLFATEDGD 230


>gi|148251774|ref|YP_001236359.1| hypothetical protein BBta_0156 [Bradyrhizobium sp. BTAi1]
 gi|146403947|gb|ABQ32453.1| hypothetical protein BBta_0156 [Bradyrhizobium sp. BTAi1]
          Length = 233

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 113/231 (48%), Gaps = 10/231 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDE----------RGI 59
           D   ++F  +  F+F++LR VLG++TG+E+      +   V    D              
Sbjct: 2   DIYTIIFLALAVFIFVRLRAVLGQRTGSERTPFDRAARNAVQGAPDNHVMPVPGAPLDPA 61

Query: 60  ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
           +     +     D    +   GT L + +  +V+    FDP+ FL  AR++YE IV +F 
Sbjct: 62  VATAGAEPGVPSDRWRGVAEPGTPLARGLDAVVANDPSFDPRHFLTGARSAYEMIVLAFA 121

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
            G   A+  L+ S VY  F+  +  R+ +E+  ++  V ID  ++++A + + T  +T+R
Sbjct: 122 NGDRRALRDLLSSEVYDSFDAVIKDREKHEQKTETRFVSIDTAELVSADLRDRTAQLTVR 181

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            V Q IS + DK   ++  +P+    + DIWTF R+    +PNW L+ T  
Sbjct: 182 FVSQMISVTRDKMGNIVDGNPDKVADITDIWTFARDTGSRDPNWKLVGTGS 232


>gi|153008182|ref|YP_001369397.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
           anthropi ATCC 49188]
 gi|151560070|gb|ABS13568.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
           anthropi ATCC 49188]
          Length = 231

 Score =  279 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 125/219 (57%), Gaps = 4/219 (1%)

Query: 18  FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73
                +FLQLR VLG++TG+EKP    +    S     +  +   +++L +   + +  +
Sbjct: 13  IAAVIIFLQLRNVLGRRTGSEKPPFDPYTSARSADAAPASGETDNVVSLPRRPGEKDFTA 72

Query: 74  INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
           I++  P+GT +N  MR I +    FDP  F+   + +YE IV SF +G    ++ L+   
Sbjct: 73  IDKAAPVGTPVNDGMRAIYAADPSFDPAGFVEGVKIAYEMIVMSFADGDRKVLKNLLSKD 132

Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
           V++ F  ++  R++  ++V+SS VGID  +I  A ++ +  ++T+ IV Q IS+++DKD 
Sbjct: 133 VFEGFVSAIDDRETRGESVRSSFVGIDKAEIAGAEMKGSEAHVTVNIVSQMISSTFDKDG 192

Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            LI  DPE   ++ D+WTF R+    +PNW L++T+  +
Sbjct: 193 KLIDGDPENVLEIKDLWTFARDTRSRDPNWKLVATEAED 231


>gi|17988336|ref|NP_540970.1| transporter [Brucella melitensis bv. 1 str. 16M]
 gi|17984111|gb|AAL53234.1| transporter [Brucella melitensis bv. 1 str. 16M]
          Length = 216

 Score =  278 bits (712), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 68/215 (31%), Positives = 123/215 (57%), Gaps = 4/215 (1%)

Query: 22  FVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSINEL 77
            +FLQLR VLG++TGNEKP    +    S     +      +++L +   + +  +I+++
Sbjct: 2   IIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGGPDNVVSLPRRANEKDYTAIDKI 61

Query: 78  FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD 137
            P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   VY+ 
Sbjct: 62  APAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVYEG 121

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197
           F  ++  R+   + V+SS VGID   I  A ++ +  ++T+ IV Q IS++ D+D  +I 
Sbjct: 122 FVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKVID 181

Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            DP+   ++ D+WTF R+    +PNW L++T+  +
Sbjct: 182 GDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 216


>gi|146337371|ref|YP_001202419.1| hypothetical protein BRADO0204 [Bradyrhizobium sp. ORS278]
 gi|146190177|emb|CAL74169.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
          Length = 233

 Score =  278 bits (712), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 111/231 (48%), Gaps = 10/231 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK- 68
           D   ++F  +  F+FL+LR VLG++TG+E+      +   V +  +    +         
Sbjct: 2   DIYTIIFLGLAVFIFLRLRSVLGQRTGSERTPFDRTARNAVGAPDNHVMPVPGAPLDPAG 61

Query: 69  ---------DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
                       D    +   GT L + +  I +    FDP+ FL  AR++YE IV +F 
Sbjct: 62  PSTGAADFGAPSDRWRGIAEPGTPLARGLDAIAANDASFDPRHFLTGARSAYEMIVLAFA 121

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
            G   A+  L+ S VY  F+  +  R+ NE+  ++  V ID  +++NA   + T  +T+R
Sbjct: 122 NGDRRALRDLLSSEVYDSFDAVIKDREKNEQKTETRFVSIDTAELVNAEARDRTAQLTVR 181

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            V Q IS + DK   ++  +P+    + DIWTF R+    +PNW L+ T  
Sbjct: 182 FVSQMISVTRDKTGNIVDGNPDKVADITDIWTFARDTGSRDPNWKLVGTGS 232


>gi|254780815|ref|YP_003065228.1| hypothetical protein CLIBASIA_03530 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040492|gb|ACT57288.1| hypothetical protein CLIBASIA_03530 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 232

 Score =  277 bits (709), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 232/232 (100%), Positives = 232/232 (100%)

Query: 1   MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60
           MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII
Sbjct: 1   MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60

Query: 61  TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
           TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE
Sbjct: 61  TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
           GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI
Sbjct: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE
Sbjct: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232


>gi|254500164|ref|ZP_05112315.1| Tim44-like domain family [Labrenzia alexandrii DFL-11]
 gi|222436235|gb|EEE42914.1| Tim44-like domain family [Labrenzia alexandrii DFL-11]
          Length = 245

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 126/230 (54%), Gaps = 17/230 (7%)

Query: 20  TFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRD--ERGIITLGKGKKK--------- 68
             F+  +LR VLGK+TG E+P    +S     + +   +  +I L    ++         
Sbjct: 16  AVFILFRLRSVLGKRTGEERPPFDPYSKPEQQNGQANGQDNVIPLPHQGQQSPEGYDDMA 75

Query: 69  ------DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
                 D    I+++ P G+ LN  ++ I+SV   F+P+ F+  A+ +YE IV +F +G 
Sbjct: 76  PARQEEDGEVVIDKVAPAGSALNNALKQILSVDRSFEPEPFIQGAKAAYEMIVMAFADGD 135

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
             A++ L+   V++ F+ ++  R+   + ++S+ VGID  +I+ A++++ T  +T+RI  
Sbjct: 136 KKALKNLLSRDVFEGFSAAIDDREKRGETIESTFVGIDKAEIVEAALKDTTAQVTVRIHS 195

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           Q ISA+ DK   ++  DP    +VIDIWTF R+    +PNW L++T+  E
Sbjct: 196 QLISATRDKGGEVVDGDPAKVTEVIDIWTFARDTATRDPNWKLVATESAE 245


>gi|298293768|ref|YP_003695707.1| import inner membrane translocase subunit Tim44 [Starkeya novella
           DSM 506]
 gi|296930279|gb|ADH91088.1| import inner membrane translocase subunit Tim44 [Starkeya novella
           DSM 506]
          Length = 241

 Score =  275 bits (703), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 121/239 (50%), Gaps = 16/239 (6%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF--SKRDERGIITLGKGK 66
            D   ++F  +  F+F++LR VLG++TG E+P    +S +            +++     
Sbjct: 2   FDIYTIIFLALAVFIFIRLRSVLGQRTGRERPPYDPYSRRDPAKAPAGPADKVVSFPGAA 61

Query: 67  KKDNLDSINE--------------LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
           +K ++    E              +  +G+ +   +  I +    FD + FL  AR +YE
Sbjct: 62  EKPSVPEPAEATESDEPAPARWAGVAEVGSAVANGLDAIAAQERGFDAQHFLTGARAAYE 121

Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
            IV +F  G   A+++L+   V++ F+ +++ R+   + +++  VGI+ ++II A ++  
Sbjct: 122 MIVVAFANGDRAALKELLAREVFEGFSAAIAEREQRGEKMETQFVGIEKVEIIEAGVKGR 181

Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           +  +T+R + Q IS + DK   +I  DPE    V D+WTF R +   +PNW L++T+  
Sbjct: 182 SAQMTLRFLSQLISVTRDKAGRVIDGDPEQVADVTDVWTFARELGTRDPNWKLVATEAA 240


>gi|154245991|ref|YP_001416949.1| import inner membrane translocase subunit Tim44 [Xanthobacter
           autotrophicus Py2]
 gi|154160076|gb|ABS67292.1| import inner membrane translocase subunit Tim44 [Xanthobacter
           autotrophicus Py2]
          Length = 250

 Score =  274 bits (701), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 115/234 (49%), Gaps = 11/234 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRD-ERGIITLGKGKKK 68
           D   ++F  +  F+F++LR VLG++TG E+P    +S       +     ++ L +    
Sbjct: 17  DIYTIIFLALAVFIFVRLRSVLGQRTGRERPPYDPYSRDTARPPQPASDKVVPLPERPVS 76

Query: 69  DNLDSINELFPI----------GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
               S  +  P           G+     + +I  +  DFD + FL  AR +YE IV +F
Sbjct: 77  PPAASPVDEAPPAYRWEGVAQEGSATAAALDEIARIEPDFDARHFLTGARAAYEMIVTAF 136

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
             G   A++ L+   VY  F  +++ R+S  + ++S  V ++  ++ + ++ + +  +T+
Sbjct: 137 AAGDRRALKDLLAKDVYDGFVSAIADRESRRETMESRFVAVEQAELQDVTVRDRSAQLTV 196

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           R V + IS +   D  ++   P+    V D+WTF R++   +PNW L++T+  +
Sbjct: 197 RFVSKLISVTRGPDGAVVDGSPDTVADVTDVWTFARDLGTRDPNWKLVATEAAQ 250


>gi|49473777|ref|YP_031819.1| hypothetical protein BQ00970 [Bartonella quintana str. Toulouse]
 gi|49239280|emb|CAF25603.1| hypothetical protein BQ00970 [Bartonella quintana str. Toulouse]
          Length = 230

 Score =  274 bits (700), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 127/225 (56%), Gaps = 4/225 (1%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGK----YVFSKRDERGIITLGK 64
            + +++L   I   VF+QLR VLGK+ G EKP    +SG+          D         
Sbjct: 3   FNIVLVLALVIMVVVFVQLRNVLGKRIGFEKPPFDPYSGRSKKQTETETADNIVSFPHQG 62

Query: 65  GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
             +K++   I+ + P G+ LN+ +R +      F P+ F+  A+ +YE IV +F +G   
Sbjct: 63  NSQKNDFSEIDAISPKGSALNEGLRALRQSDPHFSPQFFIKGAQVAYEMIVTAFAKGDRD 122

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
            ++KL+   V++ F  ++  R+ N + V+ + VGI+ ++ + A++++N  ++T+RIV + 
Sbjct: 123 QLKKLLSQNVFESFCAAIEQREKNNERVQFTFVGINKIEFVAAAMQDNEEFLTVRIVSEM 182

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           ISA+Y++   LI  DP+   ++ D+WTFV N   S+PNW L +T+
Sbjct: 183 ISATYNEQEELIDGDPDAIVEIRDVWTFVHNSLSSDPNWKLFATE 227


>gi|49474924|ref|YP_032965.1| hypothetical protein BH01040 [Bartonella henselae str. Houston-1]
 gi|49237729|emb|CAF26919.1| hypothetical protein BH01040 [Bartonella henselae str. Houston-1]
          Length = 230

 Score =  273 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 129/228 (56%), Gaps = 4/228 (1%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKY----VFSKRDERGIITLGK 64
            D +++L   I   VF+QLR VLGK+ G EKP    +S +          D    ++   
Sbjct: 3   FDIVLVLALVIMVVVFMQLRNVLGKRIGFEKPPFDPYSSRSKKQIETETADNNASLSHQV 62

Query: 65  GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
             +K++   I+ + P G+ LNK +R +      F P+ F+  A+ +YE IV +F +G  +
Sbjct: 63  NSQKNDFSEIDAIAPEGSELNKGLRALHQNDPHFSPQFFIKGAQVAYEMIVTAFAKGDRN 122

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
            + +L+   V++ F+ ++  R+ N + V+ + VGI+ ++ + A+++E   ++TIRIV + 
Sbjct: 123 QLRRLLSQDVFESFDAAIEQREKNNERVQFTFVGINKIEFVAAAMQEKEEFLTIRIVSEM 182

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           ISA+Y++    I  DP+   ++ DIWTFVRN   ++PNW L +T+  +
Sbjct: 183 ISATYNEQGERIDGDPDTIVEIRDIWTFVRNSLSTDPNWKLFATEDED 230


>gi|254486605|ref|ZP_05099810.1| transporter, Tim44 family [Roseobacter sp. GAI101]
 gi|214043474|gb|EEB84112.1| transporter, Tim44 family [Roseobacter sp. GAI101]
          Length = 219

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 10/226 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG + G EK             K        +  G
Sbjct: 1   MNSPMIQLLVLAGIAVFLILRLKNVLGTREGFEKKP----EIDAKPQKPSGPAFEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D  D      P G+     + ++  V   F   DFL  AR +YE IV  F  G +  
Sbjct: 57  PDLDITDH----APEGSDTALALAEMKRVEPSFGVSDFLGGARGAYEMIVMGFEHGNLDD 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           I+  +   ++  F D ++ R+     V+S+ +GI +M++ NA++++ T    +TIR V +
Sbjct: 113 IKPFLSEDIFDSFVDGIAAREDQGLTVESTFIGIREMELENATMDKATKEAELTIRFVAE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
             S   DKD ++I   P    +  D W F R +   +PNW+L+ST 
Sbjct: 173 MTSVVKDKDGMVIEGSPTEVKRQKDTWVFARVMGSDDPNWLLVSTD 218


>gi|83942018|ref|ZP_00954480.1| transporter, Tim44 family protein [Sulfitobacter sp. EE-36]
 gi|83953067|ref|ZP_00961789.1| transporter, Tim44 family protein [Sulfitobacter sp. NAS-14.1]
 gi|83842035|gb|EAP81203.1| transporter, Tim44 family protein [Sulfitobacter sp. NAS-14.1]
 gi|83847838|gb|EAP85713.1| transporter, Tim44 family protein [Sulfitobacter sp. EE-36]
          Length = 219

 Score =  272 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 105/226 (46%), Gaps = 10/226 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG +TG EKP            +        +  G
Sbjct: 1   MNSPMIQLLVLAAIAVFLILRLKNVLGTRTGFEKP----AEVSEKPERPSGPAFEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D  D      P G+     + ++  V   F   DFL  AR +YE IV  +  G +  
Sbjct: 57  PDLDITDH----APEGSDTALALAEMKRVEPSFGVSDFLGGARGAYEMIVMGYEHGNLDE 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183
           I+  +   +Y+ F + ++ R+     V+S  +GI +M++ NA++++  N   +TIR V +
Sbjct: 113 IKPFLSEDIYESFVEGVAAREDQGLTVESHFIGIREMELENATMDKTTNEAELTIRFVAE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
             S   D+D  ++        +  D W F R +   +PNW+L+ST 
Sbjct: 173 LTSVVKDRDGEIVEGSTTEVNRQKDTWVFARVMGSDDPNWLLVSTD 218


>gi|260431955|ref|ZP_05785926.1| transporter, Tim44 family [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415783|gb|EEX09042.1| transporter, Tim44 family [Silicibacter lacuscaerulensis ITI-1157]
          Length = 219

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 113/227 (49%), Gaps = 10/227 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG + G EKP       +   + +  R    +  G
Sbjct: 1   MNSPLIQLLVLAGIAIFLILRLKSVLGTREGFEKPPVP----QQPAASKSRRDFEVIDGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
             +D  D +    P  + + + +  +  V   F   +FL  AR++YE IV  F  G +  
Sbjct: 57  PDRDITDHV----PEDSEIAQTLAAMKRVEPSFSVSEFLQGARSAYEMIVMGFERGNLDE 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           I+  +   V++ F   ++ R+    ++++  +G+ +M +++A  +++T    IT+R VG+
Sbjct: 113 IQPFLSEEVFETFVSVVAEREDKGLSIEAEFIGVREMALVDAQFDKDTNRAEITVRFVGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             S   D+D  ++  +P    +  D WTF R +   +PNW+L++T  
Sbjct: 173 LTSVVRDRDGNIVEGNPNTIKRQKDSWTFARVMGADDPNWLLVATDA 219


>gi|170739669|ref|YP_001768324.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           sp. 4-46]
 gi|168193943|gb|ACA15890.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           sp. 4-46]
          Length = 238

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 112/236 (47%), Gaps = 9/236 (3%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFF--SGKYVFSKRDERGIITLG 63
            DS D   L+F  +  FV  +LR VLG+KTG+E+P         +       E  ++ L 
Sbjct: 3   QDSLDLTTLIFLGLAVFVIWKLRAVLGQKTGHERPPFNPLVRRREEPPPAAREDNVVRLP 62

Query: 64  KGKKKDNLDSIN-------ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116
            G  +     +         +    +   + +  ++     FDP+ F + A+ +YE IV 
Sbjct: 63  AGGDRTAAAPVATVPRNWKGVVEPNSAAARGLDLVLQQEPGFDPRAFTDGAKIAYETIVM 122

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F +G    ++ L+   V + F  ++  R+   ++V+++ V ID  +I+   +      I
Sbjct: 123 AFAKGDRRTLKSLLSREVAEGFERAIQARERAGQSVETTFVSIDRAEIVGVDLRNRVAQI 182

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           T+R + + I+A+ +    ++   P+    V D+WTF R +   +PNW L++T+ G+
Sbjct: 183 TVRYLSKLITATRNAQGAVVDGSPDTVVDVTDVWTFARTLGSRDPNWQLVATEAGQ 238


>gi|240849776|ref|YP_002971164.1| putative translocase transmembrane protein [Bartonella grahamii
           as4aup]
 gi|240266899|gb|ACS50487.1| putative translocase transmembrane protein [Bartonella grahamii
           as4aup]
          Length = 230

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 128/225 (56%), Gaps = 4/225 (1%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKY----VFSKRDERGIITLGK 64
            D ++++   +   +F+QLR VLGK+ G EKP    +S +          D        K
Sbjct: 3   FDVILVIALVVMVVIFVQLRNVLGKRIGFEKPPFDPYSRRSKKQVEAETADNIVSFPHQK 62

Query: 65  GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
             +KD+   I+++ P G+ LNK +R++  +   F P+ F+  A+ +YE IV +F +G  +
Sbjct: 63  NSQKDDFSEIDKISPEGSILNKNLRELHKIDPQFSPQFFIKGAQIAYEMIVTAFAKGDRN 122

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
            ++ L+   V++ F  ++  R+ N++ ++ + VGI+ ++ + A+I+E    +TIRIV + 
Sbjct: 123 QLKSLLCQDVFESFCTAIEQREKNKERIEFTFVGINKIEFVAAAIQEKDELLTIRIVSEM 182

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           IS +Y++    I  DP+   ++ DIWTFVRN   S+PNW L +T+
Sbjct: 183 ISVTYNEQGERIDGDPDAIVEIRDIWTFVRNSLSSDPNWKLFATE 227


>gi|159184122|ref|NP_353048.2| hypothetical protein Atu0008 [Agrobacterium tumefaciens str. C58]
 gi|159139459|gb|AAK85833.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 217

 Score =  269 bits (687), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 84/215 (39%), Positives = 127/215 (59%), Gaps = 5/215 (2%)

Query: 23  VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKR--DERGIITLG---KGKKKDNLDSINEL 77
           +F QLR VLG++TGNEKP    +S + V      D+  ++TL    + ++ +     + L
Sbjct: 3   IFFQLRSVLGRRTGNEKPPFDPYSPRDVAKGPVADDNKVVTLPKRGEAEEDNRFAEADAL 62

Query: 78  FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD 137
            P  T LN  +RD+++    F PK+FLN AR +YE IV  F +G    ++ L+   V+  
Sbjct: 63  APADTPLNASLRDVMTKDPSFRPKEFLNGARMAYEMIVMGFADGDRKTLKNLLSKEVFDG 122

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197
           F  ++S R+S  + VKS+ VGI+   I  A + ++ V +T+RIV Q ISA+YDKD  L+ 
Sbjct: 123 FEAAISERESRGEVVKSTFVGIEKADITQAGVRDSEVQVTLRIVSQLISATYDKDGKLVD 182

Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            DPE   +V DIWTF R+I   +PNW LI+T+  +
Sbjct: 183 GDPEAVAEVDDIWTFSRDIRSRDPNWKLIATESEQ 217


>gi|220921009|ref|YP_002496310.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           nodulans ORS 2060]
 gi|219945615|gb|ACL56007.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           nodulans ORS 2060]
          Length = 241

 Score =  267 bits (684), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 108/240 (45%), Gaps = 13/240 (5%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGK----YVFSKRDERGIIT 61
            DS D   L+F  +  FV  +LR VLG+KTGNE+P       +        +     ++ 
Sbjct: 2   QDSLDLTTLIFLGLAVFVIWKLRSVLGQKTGNERPPFNPLLRRREEPPPAPREGGDNVVR 61

Query: 62  LGKGKKKDNL---------DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
           L                   +   +    +   + +  ++     FDP+ F + A+ +YE
Sbjct: 62  LPGAGADRGAAAPVAATVPRNWKGVVEPNSPAARGLDLVLQQEPSFDPRAFTDGAKVAYE 121

Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
            IV +F +G    ++ L+   V   F  ++  R+   + V+++ V ID  +I+   +   
Sbjct: 122 TIVMAFAKGDRKTLKSLLSREVADGFERAIQARERAGQTVETTFVSIDRAEIVGVDVRNR 181

Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
              IT+R + + I+A+ +    ++   P+    V D+WTF R +   +PNW L++T+ G+
Sbjct: 182 VAQITVRFLSKLITATRNPQGAVVDGSPDTVVDVTDVWTFARTLGSRDPNWQLVATEAGQ 241


>gi|254450565|ref|ZP_05064002.1| transporter, Tim44 family [Octadecabacter antarcticus 238]
 gi|198264971|gb|EDY89241.1| transporter, Tim44 family [Octadecabacter antarcticus 238]
          Length = 224

 Score =  267 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 10/230 (4%)

Query: 1   MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60
           M    M+S    +L+ A I  F+ L+LR VLG + G EKP +       + ++R    + 
Sbjct: 1   MKETHMNSPVLQLLVLAGIAIFLILRLRNVLGTREGFEKPKAPPA----IPTRRFGPDLE 56

Query: 61  TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
            +  G   D  D ++      + + K +  + +    F+ ++FL  AR +YE I+  F +
Sbjct: 57  VIEGGPDPDVTDYVD----ADSDMAKALTAMKTADRSFNVREFLRGARGAYEMILTGFEK 112

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITI 178
           G +  I+  + S VY  F   + +R+ +  ++    +GI +  +++A  +E T    ITI
Sbjct: 113 GDLAEIKPFLSSDVYDAFAGVVESREKDGLSIDFKFIGISETTLVDAEFDETTKNAEITI 172

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           + + +  SA YD    L    P    K  D+WTF R +   +PNW L++T
Sbjct: 173 KFLNESTSAVYDNGGDLKEGSPTEIKKQRDVWTFGRTMGTGDPNWFLVAT 222


>gi|84501205|ref|ZP_00999410.1| transporter, Tim44 family protein [Oceanicola batsensis HTCC2597]
 gi|84390496|gb|EAQ02984.1| transporter, Tim44 family protein [Oceanicola batsensis HTCC2597]
          Length = 220

 Score =  267 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 9/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+LR VLG + G EK      +     +         +  G
Sbjct: 1   MNSPIIQLLVLAGIAVFLILRLRSVLGTREGFEKTP---VTRSGPSNSEARGNFEVIEGG 57

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D +D +    P  +     +  +  +   F   +FL  AR +YE I+  F  G++  
Sbjct: 58  PDPDIVDHV----PEDSPAAGALARMKQLEPSFSVGEFLGGARGAYEMILMGFERGEMAE 113

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183
           I+  +   VY+ F   ++ R +    +++  VG+ ++++++A +++      +T+R VGQ
Sbjct: 114 IKPFLSEEVYESFAHVVNERDAKGLTIEADFVGVKELQLVDAELDDTSREGELTVRFVGQ 173

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
              A  D+   +I  DP+      D+WTF R +   +PNW L++T
Sbjct: 174 LTFAVRDRAGEVIEGDPKSIKTQRDVWTFARKMGSDDPNWQLVAT 218


>gi|114762187|ref|ZP_01441655.1| transporter, Tim44 family protein [Pelagibaca bermudensis HTCC2601]
 gi|114545211|gb|EAU48214.1| transporter, Tim44 family protein [Roseovarius sp. HTCC2601]
          Length = 219

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 108/227 (47%), Gaps = 10/227 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M++    +L+ A I  F+ L+LR VLG + G EKP S   S +   +    R    +  G
Sbjct: 1   MNTPIVQLLVLAGIAIFLILRLRSVLGTRDGFEKPESPSPSRRDDTA----RDFEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D +D + E  P      + +  +      F   +FL+ AR +YE I+  F  G++  
Sbjct: 57  PDHDIIDHVPENSPA----AEALAKMKRAEPSFGVGEFLSGARGAYEMILMGFDNGEIED 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           ++  +   +Y+ F+D +  R      +++  VG+ ++ +++A+ ++      IT++ VG+
Sbjct: 113 LKPFLSDEIYETFSDVIEQRAQQGLTIEAQFVGVRELSLVDATFDDTERLAEITVKYVGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             S   +    +I   P    +  D+WT+ R +   +PNW L++T  
Sbjct: 173 LTSVVKNAAGEVIEGSPTAVKRQKDVWTYARRMGSDDPNWQLVATDE 219


>gi|260429391|ref|ZP_05783368.1| transporter, Tim44 family [Citreicella sp. SE45]
 gi|260420014|gb|EEX13267.1| transporter, Tim44 family [Citreicella sp. SE45]
          Length = 219

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 111/227 (48%), Gaps = 10/227 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M++    +L+ A I  F+ L+LR VLG + G EKP +   + +       +R    +  G
Sbjct: 1   MNTPIVQLLVLAGIAIFLILRLRSVLGTRDGFEKPEAPAPAKRDD----RKRDFEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D  D + E  P      + +  +  +   F+  +FL+ AR +YE I+  F  G++  
Sbjct: 57  PDHDITDHVPENSPA----AEALAKMKRIEPSFNVTEFLSGARGAYEMILMGFDNGEIED 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           ++  +   +Y+ F+D +  R      V++  VG+ ++ +++AS +E      IT++ VG+
Sbjct: 113 LKPFLSDEIYETFSDVIEQRGQQGLTVEAEFVGVRELSLVDASFDETRQLAEITVKYVGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             S   +    ++  +P    +  D+WT+ RN+   +PNW L++T  
Sbjct: 173 LTSVVKNAAGEIVEGNPRTVKRQKDVWTYARNMGTDDPNWQLVATDE 219


>gi|126463660|ref|YP_001044774.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
           sphaeroides ATCC 17029]
 gi|332559713|ref|ZP_08414035.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
           sphaeroides WS8N]
 gi|126105324|gb|ABN78002.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
           sphaeroides ATCC 17029]
 gi|332277425|gb|EGJ22740.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
           sphaeroides WS8N]
          Length = 219

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 110/225 (48%), Gaps = 10/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M S    +L+ A I  F+ ++L+ VLG + G EKP             R  R    +  G
Sbjct: 1   MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPAVPL----EDPKPRTRRDFEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
             +D +D + +    G+   K +  +      F   +FL  AR +YE IV +F +G++  
Sbjct: 57  PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLTGARGAYEMIVMAFEKGELEQ 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           I   +   V++ F +++  R++   +V+++ +G+ ++ I  AS + +T    + +R VG+
Sbjct: 113 IRPFLSPDVFESFEEAVKAREAEGLSVEATFLGLREIDIHEASFDRDTRVGQVAVRFVGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             S   D+   +I   P    +  D+WTF R +  ++PNW L++T
Sbjct: 173 LTSVVRDRTGQVIEGSPTEVKRQRDVWTFERRMGANDPNWQLVAT 217


>gi|163745120|ref|ZP_02152480.1| hypothetical protein OIHEL45_06015 [Oceanibulbus indolifex HEL-45]
 gi|161381938|gb|EDQ06347.1| hypothetical protein OIHEL45_06015 [Oceanibulbus indolifex HEL-45]
          Length = 219

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 10/226 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG + G EKP           S R       +  G
Sbjct: 1   MNSPLIQLLVLAGIAVFLILRLKNVLGTREGFEKPPV----SDQTPSARSGPSFEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D  D +    P  +   K + ++  V   F   DFL  AR +YE IV  +  G +  
Sbjct: 57  PDLDITDHV----PEDSTSGKALAEMKRVEPSFGVNDFLQGARGAYEMIVMGYERGDLAE 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           I+  +   VY+ F D ++ R+     ++++ +G+ ++++I+A ++E T    +TIR VG+
Sbjct: 113 IQPFLAEDVYESFVDGVAAREDQGLTIEANFIGVRELELIDARMDEATKEAELTIRFVGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
             SA  +++  ++        +  D W F R +   +PNW+L+ST 
Sbjct: 173 LTSAVRNREGEIVEGSINEIKRQKDTWVFARVMGSDDPNWLLVSTD 218


>gi|163867402|ref|YP_001608597.1| hypothetical protein Btr_0112 [Bartonella tribocorum CIP 105476]
 gi|161017044|emb|CAK00602.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 230

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 126/225 (56%), Gaps = 4/225 (1%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKY--VFSKRDERGIITLGKGK 66
            D ++++   +   +F+QLR VLGK+ G EKP    +S +            I++    K
Sbjct: 3   FDVILVIALVVMVVIFVQLRSVLGKRIGFEKPPFDPYSRRSKKQTEAETTENIVSFPHQK 62

Query: 67  --KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
             +K +   I+E+ P G+ LN+ +R +  +   F P+ F+  A+ +YE IV +F +G   
Sbjct: 63  NLQKGDFSEIDEIAPEGSILNENLRALRRIDPHFSPQSFIKGAQIAYEMIVTAFAKGDRS 122

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
            ++ L+   V++ F   +  R+ N++ ++ + VGI+ ++ ++A+I+E    +TIRI+ + 
Sbjct: 123 QLKSLLCQDVFESFCAVIEQREKNKERIEFTFVGINKIEFVSAAIQEKDELLTIRIISEM 182

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           IS +Y++    I  +P+   ++ DIWTFVRN    +PNW L +T+
Sbjct: 183 ISVTYNEQGERIDGNPDAIVEIRDIWTFVRNSLSPDPNWKLFATE 227


>gi|56698697|ref|YP_169074.1| Tim44 family protein [Ruegeria pomeroyi DSS-3]
 gi|56680434|gb|AAV97100.1| transporter, Tim44 family [Ruegeria pomeroyi DSS-3]
          Length = 218

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 11/227 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG + G EKP             R  R    +  G
Sbjct: 1   MNSPLIQLLVLAGIAIFLILRLKSVLGTREGFEKPPVPQ-----QPENRTRRDFEVIEGG 55

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
             +D  D +    P  +   + +  +  +   F   +F+  AR +YE IV  F  G +  
Sbjct: 56  PDRDITDHV----PEDSPQAQALAAMKRIEPAFSVSEFVQGARGAYEMIVMGFERGNLDE 111

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183
           IE  +   V++ F   ++ R+     +++  +G+ +  I +   ++  N   IT+R VG+
Sbjct: 112 IEPFLTEEVFETFVGVVAAREDQGLTIEAEFIGVRETSIQDVHFDKDSNRGEITMRFVGE 171

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             S   D+   +I   P    +  D+WTF R +   +PNW+L++T  
Sbjct: 172 LTSVVRDRGGDVIEGSPTAVKRQKDVWTFARVMGTDDPNWLLVATDA 218


>gi|146278709|ref|YP_001168868.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145556950|gb|ABP71563.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 219

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 113/225 (50%), Gaps = 10/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M S    +L+ A I  F+ ++L+ VLG + G EKP       +     R  R    +  G
Sbjct: 1   MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPPVPLEDPR----PRPRREFEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
             +D +D + +    G+   K +  +      F   +FL  AR +YE IV +F +G++  
Sbjct: 57  PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLTGARGAYEMIVMAFEKGELEQ 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI--EENTVYITIRIVGQ 183
           I   + + V++ F D+++ R++   +V+++ +G+ ++ I  AS   +     I +R VG+
Sbjct: 113 IRPFLSAEVFESFEDAVNAREAEGLSVEANFLGLREIDIHEASFERDSRIGQIAVRFVGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             S   +++  ++   P    +  D+WTF R++  ++PNW L++T
Sbjct: 173 LTSVVRNREGQVVEGSPTEIKRQRDVWTFERHMGANDPNWQLVAT 217


>gi|126738514|ref|ZP_01754219.1| transporter, Tim44 family protein [Roseobacter sp. SK209-2-6]
 gi|126720313|gb|EBA17019.1| transporter, Tim44 family protein [Roseobacter sp. SK209-2-6]
          Length = 241

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 107/230 (46%), Gaps = 11/230 (4%)

Query: 2   VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61
             + M+S    +L+ A I  F+ L+L+ VLG + G EKP       +          +  
Sbjct: 20  REVLMESPLIQLLVLAGIAVFLILRLKSVLGTREGFEKPPVSAAEKRQGRP-----DLEV 74

Query: 62  LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
           +  G  +D  D + E  P      +    +      F   +F+  AR +YE I+  F  G
Sbjct: 75  IEGGPDRDITDHVEEESPA----AQAFASMKRAEPSFSVSEFVQGARGAYEMILMGFENG 130

Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIR 179
           ++ A++  +   VY  F ++++ R+     +++  +G+ +  ++ A  ++  NT  +T+R
Sbjct: 131 ELDALKGFLAEDVYDSFVEAVADREDKGLTIEAEFIGVRETAVVGAHFDDANNTAEVTMR 190

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            VG+  S   D+D  ++  D +   +  D W F R++   +PNW L++T 
Sbjct: 191 FVGELTSVVRDRDGEIVEGDAKAVKRQKDTWVFARSMGTDDPNWQLVATD 240


>gi|255263169|ref|ZP_05342511.1| transporter, Tim44 family [Thalassiobium sp. R2A62]
 gi|255105504|gb|EET48178.1| transporter, Tim44 family [Thalassiobium sp. R2A62]
          Length = 219

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 10/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+LR VLG + G EKP     + +     R       +  G
Sbjct: 1   MNSPIIQLLVLAGIAIFLILRLRNVLGTREGFEKPP----AQQSSAPDRALSDFEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D  D +    P G      +  +  V   F+  +FL  AR +YE I+ +F  G++  
Sbjct: 57  PDHDITDHV----PEGGDAYNALLGMKKVDPSFNVGEFLGGARGAYEMILMAFERGEIEE 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           I+  + S VY+ F   +  RK+    ++++ VGI DM +  A   E T    I +R VG+
Sbjct: 113 IKPFLSSDVYEAFATVVDDRKAKGVTIEANFVGISDMALNAADFNETTGEAEIAVRFVGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             S   DK   +I        +  D WTF R++   +PNW L++T
Sbjct: 173 MTSIVRDKGGDVIEGSETTVKRQKDTWTFARDMDADDPNWDLVAT 217


>gi|221640736|ref|YP_002526998.1| Import inner membrane translocase subunit Tim44 [Rhodobacter
           sphaeroides KD131]
 gi|221161517|gb|ACM02497.1| Import inner membrane translocase, subunit Tim44 precursor
           [Rhodobacter sphaeroides KD131]
          Length = 219

 Score =  265 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 110/225 (48%), Gaps = 10/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M S    +L+ A I  F+ ++L+ VLG + G EKP             R  R    +  G
Sbjct: 1   MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPAVPL----EDPKPRTRRDFEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
             +D +D + +    G+   K +  +      F   +FL  AR +YE IV +F +G++  
Sbjct: 57  PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLIGARGAYEMIVMAFEKGELEQ 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           I   +   V++ F +++  R++   +V+++ +G+ ++ I  AS + +T    + +R VG+
Sbjct: 113 IRPFLSPDVFESFEEAVKAREAEGLSVEATFLGLREIDIHEASFDRDTRVGQVAVRFVGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             S   D+   +I   P    +  D+WTF R +  ++PNW L++T
Sbjct: 173 LTSVVRDRTGQVIEGSPTEVKRQRDVWTFERRMGANDPNWQLVAT 217


>gi|77464817|ref|YP_354321.1| hypothetical protein RSP_1239 [Rhodobacter sphaeroides 2.4.1]
 gi|77389235|gb|ABA80420.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
          Length = 219

 Score =  265 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 10/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M S    +L+ A I  F+ ++L+ VLG + G EKP             R  R    +  G
Sbjct: 1   MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPAVPL----EDPKPRTRRDFEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
             +D +D + +    G+   K +  +      F   +FL  AR +YE IV +F +G++  
Sbjct: 57  PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLTGARGAYEMIVMAFEKGELEQ 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           I   + S V++ F +++  R++   +V+++ +G+ ++ I  AS + +T    + +R VG+
Sbjct: 113 IRPFLSSDVFESFEEAVKAREAEGLSVEATFLGLREIDIHEASFDRDTRVGQVAVRFVGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             S   D+   +I   P    +  D+WTF R +  ++PNW L++T
Sbjct: 173 LTSVVRDRTGQVIEGSPTEVKRQRDVWTFERRMGANDPNWQLVAT 217


>gi|83313642|ref|YP_423906.1| hypothetical protein amb4543 [Magnetospirillum magneticum AMB-1]
 gi|82948483|dbj|BAE53347.1| Uncharacterized protein [Magnetospirillum magneticum AMB-1]
          Length = 281

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 113/220 (51%), Gaps = 11/220 (5%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           I+ FA +  F+ L+LR VLGK+TG E+P       ++   +     ++ L   ++  +  
Sbjct: 72  IVFFAMVAAFLVLRLRSVLGKRTGAERPPE-----QWTPPEAAADNVVDLQSVRRSASEP 126

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
                 P  T + + +  I +    FD   FL  A+ ++E IV +F  G    ++ L+  
Sbjct: 127 ------PAETPMGQGLAAIRAADRGFDLDGFLGGAKAAFEMIVIAFAHGDKATLQPLLAP 180

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            VY+ F+D++  R+ + + +++ LVGI   +++ A ++     +TIR V + ++A  D  
Sbjct: 181 DVYRHFSDAIDARRQHGETLQTELVGIRTAELVEAGMDGRFAALTIRFVSEQVNALRDAK 240

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
             ++  +PE    VID+WTF R+   ++PNW L +T   E
Sbjct: 241 GEVVEGNPERVIDVIDLWTFRRDTRSADPNWALAATHTPE 280


>gi|254472289|ref|ZP_05085689.1| import inner membrane translocase, subunit Tim44 [Pseudovibrio sp.
           JE062]
 gi|211958572|gb|EEA93772.1| import inner membrane translocase, subunit Tim44 [Pseudovibrio sp.
           JE062]
          Length = 248

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 123/244 (50%), Gaps = 21/244 (8%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKY------VFSKRDERGIITL 62
            D   ++F      +FL+LR VLG +TGNE+     +S +         +  +E  +I L
Sbjct: 5   FDVYNIIFLIAAVVIFLRLRSVLGNRTGNERQPFDPYSAQQKQDSQKTQAPENEDNVIPL 64

Query: 63  GKGK-------------KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN 109
              +             ++     I+++   GT LN  +R+I      F+PK+F+  AR 
Sbjct: 65  PGSEHVHHDPERAEREAREQIEAEIDKVAKKGTDLNHGLREIWKAEPSFNPKEFVEGARG 124

Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
           +YE I+ SF +G    ++ L+   V+  F+ ++  R+S  + V+S+ VGID   I+ A  
Sbjct: 125 AYEIILMSFAQGDRRTLKDLLSPEVFTGFSAAIDDRESRNERVESTFVGIDKADIVEAVF 184

Query: 170 --EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
             +++   +T+R   Q I+A+ D +N ++  DP    ++ DIWTF R    ++PNW L++
Sbjct: 185 NQKDSLAEVTVRFKSQLITATRDSENRIVDGDPTAVSELTDIWTFARVTGVNDPNWKLVA 244

Query: 228 TKLG 231
           T+  
Sbjct: 245 TESA 248


>gi|126724535|ref|ZP_01740378.1| import inner membrane translocase, subunit Tim44 [Rhodobacterales
           bacterium HTCC2150]
 gi|126705699|gb|EBA04789.1| import inner membrane translocase, subunit Tim44 [Rhodobacterales
           bacterium HTCC2150]
          Length = 236

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 61/229 (26%), Positives = 117/229 (51%), Gaps = 10/229 (4%)

Query: 2   VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61
            F KM S    +L+ A I  F+ L+L+ VLG + G EKP +    G+   S R +  ++ 
Sbjct: 14  RFTKMGSSMIQLLVLAGIAVFLILRLKNVLGTREGFEKPRAP--QGQAQQSNRPQLEVVE 71

Query: 62  LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
            G  +       I E   I +     + +I +   +F  ++FL  A+ +YE I+ +F  G
Sbjct: 72  NGPDQD------IAEYVEIDSEAGMALAEIKAQDRNFTVQEFLGGAKGAYEMILIAFEGG 125

Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIR 179
           K+  +E  +   V + F + ++ R+     V ++ +G+ +M + +A+++   N   +T++
Sbjct: 126 KLSDVEPFLSEEVMESFVEVVADREDQGLTVTANFIGLREMAVHDATLDPITNIAEVTVK 185

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            VG+  S  ++ +  ++  D +   +  DIWTF R++   NPNW L++T
Sbjct: 186 FVGEMTSVVHNAEGEVVEGDEKTIKRQKDIWTFARDLGDDNPNWQLVAT 234


>gi|126730112|ref|ZP_01745924.1| transporter, Tim44 family protein [Sagittula stellata E-37]
 gi|126709492|gb|EBA08546.1| transporter, Tim44 family protein [Sagittula stellata E-37]
          Length = 219

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 10/227 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M +    +L+ A I  F+ L+LR VLG + G E+P       +        R    +  G
Sbjct: 1   MQNPLLQLLVLAGIAVFLVLRLRSVLGTRDGFERP----TPAEKSKETTSRREFEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D  D + E    GT     +  +  V   F   +FL  AR +YE I+  F  G +  
Sbjct: 57  PDHDITDHVAE----GTDAANALAAMKRVEPSFSVSEFLGGARGAYEMILMGFERGDIEG 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           ++  +   V++ F++ +  R+S    + +  VG+ +M +  AS + +T    IT+R VG+
Sbjct: 113 LKPFLADDVFETFSEVVEARESEGLTIDADFVGVREMTLAGASFDPDTREAEITVRYVGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             S   + +  ++   P    +  DIWT+ R +   +PNW L++T  
Sbjct: 173 LTSVVKNAEGEIVEGSPTAVKRQKDIWTYARTMGADDPNWQLVATDE 219


>gi|114706069|ref|ZP_01438972.1| Calcium-binding EF-hand [Fulvimarina pelagi HTCC2506]
 gi|114538915|gb|EAU42036.1| Calcium-binding EF-hand [Fulvimarina pelagi HTCC2506]
          Length = 229

 Score =  262 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 15/229 (6%)

Query: 19  ITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF------SKRDERGIITLGKGKKKDN-- 70
           +   V  QL  VLG++TGNE+P    ++                  ++TL   +  D   
Sbjct: 1   MAAIVLFQLYNVLGRRTGNERPPFDPYTRNRSRDRSGESEDAAGDNVVTLPNRRANDRNE 60

Query: 71  -------LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
                     I+ +   GT LNK +R I     +FDPK+FL  A+ +YE +VD+F +G  
Sbjct: 61  DVPAGVRYAEIDRVSETGTPLNKELRKIKDADPNFDPKEFLEGAKIAYEMVVDAFAQGDR 120

Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
           + +  L+   VY+ F  +++TR+ + + ++SS +GIDD KI++A +      +TIRIV +
Sbjct: 121 NTLRNLLSPDVYEGFEAAIATREESGETMRSSFIGIDDAKIVSAELRGREALVTIRIVSE 180

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            ISA+ + +  ++  D E   +V DIWTF R+    +PNW L+ T+  E
Sbjct: 181 MISATLNSNGDVLDGDMETVVEVRDIWTFGRDTKSRDPNWKLVGTESEE 229


>gi|149912880|ref|ZP_01901414.1| transporter, Tim44 family protein [Roseobacter sp. AzwK-3b]
 gi|149813286|gb|EDM73112.1| transporter, Tim44 family protein [Roseobacter sp. AzwK-3b]
          Length = 219

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 109/224 (48%), Gaps = 8/224 (3%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG + G E P     +G      +       +  G
Sbjct: 1   MNSPLLQLLVLAGIAIFLILRLKSVLGTRDGFEGPPRSERAGAT---PQRRDTFEVIEGG 57

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D +D++++    G+     +  +  +   F+   FL  AR +YE I+ +F  G++  
Sbjct: 58  PDYDIIDNVSD----GSDAADALARMKRIEPSFNVTQFLQGARGAYEMILMAFERGQLED 113

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI-EENTVYITIRIVGQF 184
           +   +D  VY+ F   +  R+     V++  +G+ + K+  A++ ++N   IT+R VG+ 
Sbjct: 114 VAPFLDEDVYEAFAQVIDARQEQGLIVEAEFLGLRETKLAEATLSDDNRAAITVRFVGEL 173

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            S   D +  ++  D +   +  DIWTF R +   +PNW L++T
Sbjct: 174 TSIVRDANGEIVEGDAKTAKRQKDIWTFERVMGSDDPNWRLVAT 217


>gi|89067415|ref|ZP_01154928.1| transporter, Tim44 family protein [Oceanicola granulosus HTCC2516]
 gi|89046984|gb|EAR53038.1| transporter, Tim44 family protein [Oceanicola granulosus HTCC2516]
          Length = 220

 Score =  261 bits (667), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 109/225 (48%), Gaps = 9/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+LR VLG + G EKP         +  + D   +  +  G
Sbjct: 1   MNSPIIQLLVLAGIAVFLILRLRSVLGTREGFEKPPVTESDRSALRRRPD---LEVIEGG 57

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
             +D +D ++     G+     +  +      F   DFL  AR +YE I+ +F  G +  
Sbjct: 58  PDRDIVDHVD----AGSDAADALARMKRAEPAFGVGDFLGGARGAYEMILMAFENGDLSE 113

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           ++  +   VY+ F+  +  R+    +V+++ VG+ ++ + +A  +E T    +T+R  G+
Sbjct: 114 VKDFLGPEVYEAFSQVIEERRERGLHVEATFVGLSEITLKDAEFDETTREAELTVRFTGE 173

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             S   D    ++   P    +  D+WTF R +  ++PNW+L++T
Sbjct: 174 ITSVVRDAGGDIVEGSPTEIKRQRDVWTFARTMGANDPNWILVAT 218


>gi|254460692|ref|ZP_05074108.1| import inner membrane translocase, subunit Tim44 [Rhodobacterales
           bacterium HTCC2083]
 gi|206677281|gb|EDZ41768.1| import inner membrane translocase, subunit Tim44 [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 217

 Score =  260 bits (666), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 12/225 (5%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG + G E+P +       V S R       +  G
Sbjct: 1   MNSPIIQLLVLAGIAVFLILRLKNVLGTREGFEQPPA------QVPSGRKRPEFEVIEGG 54

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D  D  + +        + +  + +    F   DFL  AR +YE I+  F  G++  
Sbjct: 55  PDPDIADHTDGMPEA----AEALAKMKAAEPSFGVSDFLGGARGAYEMILIGFERGEMAD 110

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183
           I+  +D  VY  F + +  R      V++  VGI +M + +A+ ++      ++++ +G+
Sbjct: 111 IKPFLDDDVYASFAEVVEMRAKQGLTVEAEFVGIREMSLADATFDDENGIGEVSVKFIGE 170

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             S   D    ++  D +   +  DIWTF R +   +PNW L++T
Sbjct: 171 MTSVVRDNAGEIVEGDAKKVKRQKDIWTFARKMGSDDPNWQLVAT 215


>gi|190889648|ref|YP_001976190.1| translocase transmembrane protein [Rhizobium etli CIAT 652]
 gi|190694927|gb|ACE89012.1| putative translocase transmembrane protein [Rhizobium etli CIAT
           652]
          Length = 233

 Score =  260 bits (666), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 78/232 (33%), Positives = 122/232 (52%), Gaps = 6/232 (2%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER--GIITLG 63
           M S DF+ L F      +F QLR VLG++TGNEKP    +  +            ++TL 
Sbjct: 1   MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYQPRDAAPAEAADAGKVVTLP 60

Query: 64  K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
           +     + +D   +I+ +   GT LN+ +R +      F PK+FLN AR +YE IV ++ 
Sbjct: 61  RRDATAEDEDRFSAIDAVAAPGTPLNESLRALNKADASFTPKEFLNGARMAYEMIVMAYA 120

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +G    ++ L+   VY  F+ ++  R++  + VKS+ VGID  +I +A  +     IT+R
Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGTEAQITVR 180

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           IV Q ISA+YDK ++LI  D E   +V D+WTF    P +         ++G
Sbjct: 181 IVSQLISATYDKADVLIEGDAENVAEVNDLWTFAPRYPLARSELETCGDRIG 232


>gi|254512041|ref|ZP_05124108.1| transporter, Tim44 family [Rhodobacteraceae bacterium KLH11]
 gi|221535752|gb|EEE38740.1| transporter, Tim44 family [Rhodobacteraceae bacterium KLH11]
          Length = 219

 Score =  260 bits (665), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 104/227 (45%), Gaps = 10/227 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG + G EKP       +   +    R    +  G
Sbjct: 1   MNSPLIQLLVLAGIAIFLILRLKSVLGTREGFEKPP----LQQQRDTNDARRDFEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D  D + E     +   + +  +  V   F   +F+  AR +YE IV  F +G +  
Sbjct: 57  PDHDITDHVAE----DSEQAETLTAMKRVEPSFSVSEFVQGARGAYEMIVMGFEKGNLDE 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           I+  +   V+  F   ++ R+     +++  +G+ +  + +   +++T    IT+R +G+
Sbjct: 113 IQPFLSEEVFDTFVSVVADREDKGLTIEAEFIGVRETTLADVKFDKDTNQAEITMRFIGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             S   D+   +I  +P    +  D WTF R +   +PNW+L++T  
Sbjct: 173 LTSVVRDRGGDIIEGNPNTVKRQKDSWTFARVMGLDDPNWLLVATDA 219


>gi|90420989|ref|ZP_01228893.1| conserved hypothetical protein, Tim44 domain [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90334767|gb|EAS48543.1| conserved hypothetical protein, Tim44 domain [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 238

 Score =  260 bits (665), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 13/235 (5%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFS--KRDERGIITLG----- 63
           F  + F  +   V  QLR VLGK+TGNE+P    +S +            ++TL      
Sbjct: 3   FGTIFFIIVAAIVLFQLRSVLGKRTGNERPPFDPYSRRDAPRDDAARNDNVVTLPNRRGG 62

Query: 64  ------KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117
                         ++I+++   GT +N  +R I      FDPK+FL+ A+ +YE IV +
Sbjct: 63  TEIEGEAAPAATPYEAIDKVAKPGTPVNAELRRIRDADPSFDPKEFLDGAKVAYEMIVTA 122

Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
           F +G    ++ L+   VYQ F  ++S R+  ++ ++ S VGIDD  I+ A  ++    +T
Sbjct: 123 FADGDRKLLKNLLSPDVYQGFEQAISEREQRDERMQFSFVGIDDATIVGAEQKDREAMVT 182

Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           +RIV Q ISA    D  ++  D E   +V D+WTF R+    +PNW L  T+  +
Sbjct: 183 LRIVAQVISAVVKPDETVVDGDLETVVEVKDVWTFARDTRSRDPNWKLAGTESED 237


>gi|163850987|ref|YP_001639030.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           extorquens PA1]
 gi|218529814|ref|YP_002420630.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           chloromethanicum CM4]
 gi|240138118|ref|YP_002962590.1| hypothetical protein MexAM1_META1p1451 [Methylobacterium extorquens
           AM1]
 gi|254560680|ref|YP_003067775.1| hypothetical protein METDI2225 [Methylobacterium extorquens DM4]
 gi|163662592|gb|ABY29959.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           extorquens PA1]
 gi|218522117|gb|ACK82702.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           chloromethanicum CM4]
 gi|240008087|gb|ACS39313.1| conserved hypothetical protein, putative membrane protein
           [Methylobacterium extorquens AM1]
 gi|254267958|emb|CAX23826.1| conserved hypothetical protein, putative membrane protein
           [Methylobacterium extorquens DM4]
          Length = 239

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 109/237 (45%), Gaps = 11/237 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSG---KYVFSKRDERGIITL 62
            DS D   L+F  +  FV  +LR VLG+KTG E+           +    + +   ++ L
Sbjct: 2   QDSFDATTLIFLALAVFVIWRLRSVLGQKTGTERSPFRPVERNRTEPPAGRGEGDNVVRL 61

Query: 63  GKGKKKDNL--------DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
               +                 +   G+ + + +  +V +   F+P+ FL  A+ +YE I
Sbjct: 62  PGADRSPAGAAAVQTAARDWRGIAEPGSAVARGLEQVVQLEPAFEPRAFLEGAKGAYETI 121

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
           V +F +G    +  L+   V + F  ++S R+   +  +++ + ID  +I    ++    
Sbjct: 122 VTAFAKGDRKTLRALLSREVCEGFERAISEREKRNETAETTFISIDKAEIAAVEVKNRAA 181

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
            IT+R +   I+A+ D D  +I  + E   +V D+WTF R +   +PNW L++T  G
Sbjct: 182 QITVRFLSNLITATRDADGKVIDGNAETGVEVPDVWTFARTLGSRDPNWQLVATDAG 238


>gi|46201691|ref|ZP_00054533.2| COG4395: Uncharacterized protein conserved in bacteria
           [Magnetospirillum magnetotacticum MS-1]
          Length = 219

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 112/220 (50%), Gaps = 11/220 (5%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           I+ FA +  F+ L+LR VLGK+TG E+P       K+   +     ++ L   ++  +  
Sbjct: 10  IVFFAMVAAFLVLRLRSVLGKRTGTERPPE-----KWSPVEAPADNVVDLQSVRRSASEP 64

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
                 P  T L + +  I +    FD   FL  A+ ++E IV +F  G    ++ L+  
Sbjct: 65  ------PAETPLGQGLAAIRAADRGFDLDGFLGGAKAAFEMIVIAFAHGDKATLQPLLAP 118

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            VY+ F++++  R+ + + +++ LVGI   +++ A ++     +TI+ V + ++A  D  
Sbjct: 119 DVYRHFSEAIDARRQHGETLQTELVGIRSAELVEAGMDGRFAALTIKFVSEQVNALRDAK 178

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
             ++  +PE    VID+WTF R+    +PNW L +T   +
Sbjct: 179 GEVVEGNPERVIDVIDLWTFRRDTRSPDPNWALTATHTPD 218


>gi|121602069|ref|YP_989543.1| Tim44 domain-containing protein [Bartonella bacilliformis KC583]
 gi|120614246|gb|ABM44847.1| Tim44 domain protein [Bartonella bacilliformis KC583]
          Length = 230

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSG--KYVFSKRDERGIITLGKG- 65
            D + ++   +   VF+QLR VLGK+TG E+P    +SG  K          I +  +  
Sbjct: 3   FDVVFVIALVVMVIVFVQLRNVLGKRTGFERPPFNPYSGHSKKQVEADTTGDITSFPQQI 62

Query: 66  -KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
             +K +   I+ + P G+ LN  +R I    + F P+ F+N  + +YE I+ +F +G   
Sbjct: 63  NAQKGDFSDIDAIAPKGSALNDGLRAIRQADSSFSPQFFINGVQVAYEMIMTAFAQGNRD 122

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
            +++L+   V++ F  ++  R+   + ++ + VGI+ ++ I A +++    +T+RIV + 
Sbjct: 123 QLKELLSQNVFESFCKAIEQREKRNERIQFTFVGINKVEFIAAEMQKREELLTVRIVSEI 182

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           IS  Y++    I  DPE   ++ D+WTFVR+    NPNW L +T+
Sbjct: 183 ISVIYNEQEERIDGDPEAIVEIRDVWTFVRDSVSKNPNWKLFATE 227


>gi|254463881|ref|ZP_05077292.1| transporter, Tim44 family [Rhodobacterales bacterium Y4I]
 gi|206684789|gb|EDZ45271.1| transporter, Tim44 family [Rhodobacterales bacterium Y4I]
          Length = 214

 Score =  259 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 11/223 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              +L+ A I  F+ L+LR VLG + G EKP       +          +  +  G  +D
Sbjct: 1   MIQLLVLAGIAVFLILRLRSVLGTREGFEKPPLPQSEARGRRP-----DLEVIEGGPDRD 55

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
             D + E    G++  + +  +      F  ++F+  AR +YE I+  F  G +  I+  
Sbjct: 56  ITDYVAE----GSKQAQALAAMKRAEPSFQVQEFVQGARGAYEMILMGFEHGNLDDIQPF 111

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISA 187
           +   V+  F D+++ R+     +++  +G+ +  + +A  +  T    IT+R VG+  S 
Sbjct: 112 LAEDVFDSFVDAVAQREDKGYKIEADFIGVRETTLQDAQFDPQTGRAEITMRFVGELTSV 171

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             D+   ++  DP+   +  D W F RN+   +PNW L++T  
Sbjct: 172 VRDRGGDIVEGDPKAIKRQKDTWIFARNMGSDDPNWQLVATDA 214


>gi|86136747|ref|ZP_01055325.1| transporter, Tim44 family protein [Roseobacter sp. MED193]
 gi|85826071|gb|EAQ46268.1| transporter, Tim44 family protein [Roseobacter sp. MED193]
          Length = 218

 Score =  259 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 111/226 (49%), Gaps = 11/226 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+LR VLG + G EKP       +          +  +  G
Sbjct: 1   MESPLISLLVLAGIAVFLILRLRSVLGTREGFEKPPVAPTQKRSNGP-----DLEVIEGG 55

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
             +D  D + E    G+   K +  +  V   F   +F+  AR++YE I+  F +G++  
Sbjct: 56  PDRDITDYVEE----GSDQAKALAAMKRVEPSFQVGEFVQGARSAYEMILMGFEKGELDD 111

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           I+  +   V+  F ++++ R+     +++  +G+ +  +++A  +E T    +T+R +G+
Sbjct: 112 IQGFLAEDVFDSFVEAVAQREDQGLTIEAEFIGVRETAVVDAIFDETTGVAELTMRFIGE 171

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
             S   +++  ++  D +   +  DIW F R++   +PNW L++T 
Sbjct: 172 MTSVVRNREGEIVEGDAKAIKRQKDIWVFARSMGVDDPNWQLVATD 217


>gi|126734398|ref|ZP_01750145.1| import inner membrane translocase, subunit Tim44 [Roseobacter sp.
           CCS2]
 gi|126717264|gb|EBA14128.1| import inner membrane translocase, subunit Tim44 [Roseobacter sp.
           CCS2]
          Length = 220

 Score =  259 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 98/225 (43%), Gaps = 9/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+LRGVLG + G EKP            K D      +  G
Sbjct: 1   MNSPLIQLLVLAGIAVFLILRLRGVLGTREGFEKPAVTRPEPSSRVGKPD---FDVIEGG 57

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D  D I E    G+   K + D+      F+  +FL  AR +YE I+ +F  G + +
Sbjct: 58  PDLDITDHIEE----GSDSAKALADMKRADPSFNVSEFLGGARGAYEMILMAFENGDLDS 113

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183
           I   +   VY+ F   +  R+     V +  +GI DM +  A  ++      +++R   +
Sbjct: 114 IVPFISEDVYEAFASVVDERQRQGLTVDAKFIGISDMTLTEAVFDDFSKEGEVSVRFKSE 173

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             S   D    +I        +  D WTF R +   +PNW L++T
Sbjct: 174 MTSVVRDNAGDIIEGSETEIKRQKDTWTFARKMDADDPNWRLVAT 218


>gi|170750111|ref|YP_001756371.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656633|gb|ACB25688.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           radiotolerans JCM 2831]
          Length = 237

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 113/235 (48%), Gaps = 9/235 (3%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEK-PFSGFFSGKYVFSKRDERGIITLGK 64
            DS D   ++F  +  FV  +LR VLG+KTG E+ PF      +     R +   +    
Sbjct: 2   QDSFDVTTIIFLALAVFVIWRLRSVLGQKTGAERSPFKPVDRSRTEPQARSDGDNVVRLP 61

Query: 65  GKKK--------DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116
           G  +                +   G+ + + +   +     FDP+ F+  A+++YEAI+ 
Sbjct: 62  GADRVQAAPPPAAAPRDWRGIAEPGSEVARGLEACIQAEPSFDPRAFIEGAKSAYEAIMI 121

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F +G    +  L+   V + F  +++ R+ N + ++++ V ID  +I+   +     ++
Sbjct: 122 AFAKGDRKTLRGLLSKEVGEAFERAIAERERNRQTLETTFVSIDKAEIVAVEVRNRVAHV 181

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           T+R +   I+A+ + D  ++    E   +V D+WTF R +   +PNW L++T+ G
Sbjct: 182 TVRFLSNLITATRNADGKVVDGSAETVVEVPDVWTFARTLGSRDPNWQLVATEAG 236


>gi|259417909|ref|ZP_05741828.1| import inner membrane translocase, subunit Tim44 [Silicibacter sp.
           TrichCH4B]
 gi|259346815|gb|EEW58629.1| import inner membrane translocase, subunit Tim44 [Silicibacter sp.
           TrichCH4B]
          Length = 218

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 113/227 (49%), Gaps = 11/227 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG + G EKP           +   +R    +   
Sbjct: 1   MESPLIELLVLAGIAVFLILRLKSVLGTREGFEKPPLANNE-----APAPQRKFEVIEGS 55

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D +  ++E    G+   + + D+    + F   +F+  AR +YE I+  F  G++  
Sbjct: 56  PDDDIVAYVDE----GSPQAQALSDMKRADSSFQVAEFVQGARGAYEMILMGFETGELDG 111

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183
           I+  +   ++Q F D++S R+     +++  +G+ +  I++A+ +   +T  +T+R VG+
Sbjct: 112 IQPFISEEIFQSFVDAVSAREDQGLTIEAEFIGVRETTIVDATFDAATSTAEVTVRFVGE 171

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             SA  ++   ++  DP+   +  D WTF R +   +PNW+L++T  
Sbjct: 172 LTSAVRNRAGEIVEGDPKAVKRQKDTWTFSRQMGTGDPNWLLVATDA 218


>gi|163738003|ref|ZP_02145419.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis BS107]
 gi|163742601|ref|ZP_02149987.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis 2.10]
 gi|161384186|gb|EDQ08569.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis 2.10]
 gi|161388619|gb|EDQ12972.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis BS107]
          Length = 218

 Score =  258 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 106/227 (46%), Gaps = 11/227 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG + G EKP       +    +     +  +  G
Sbjct: 1   MESPVIQLLVLAGIAVFLILRLKSVLGTREGFEKPAVPQADRQNRRPE-----LEVIEGG 55

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D +D + E  P  +     +  +      F+ +DF+  AR +YE I+ +F  G++  
Sbjct: 56  PDHDIVDYVPEDSPQASD----LAAMKKAEPSFEVRDFVQGARGAYEMILMAFERGELDD 111

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           IE  +   V+  F  +++ R+     +++  +G+ +  + + S +  T    IT+R V +
Sbjct: 112 IEAFLAPDVFDSFVTAVAHREDQGLTIEAEFIGVRETTLTDTSFDPATGDAQITMRFVAE 171

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             S   D+   ++  DP+   +  D W F R +  ++PNW L++T  
Sbjct: 172 LTSVVRDRGGDIVEGDPKAVKRQKDTWVFGRTMGSADPNWHLVATDA 218


>gi|209966267|ref|YP_002299182.1| hypothetical protein RC1_3002 [Rhodospirillum centenum SW]
 gi|209959733|gb|ACJ00370.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 230

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 108/225 (48%), Gaps = 6/225 (2%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEK----PFSGFFSGKYVFSKRDERGIITLGKGK 66
           F IL+F  +  F+  +LR VLG++ G E+    PF+         +  +   ++ L    
Sbjct: 8   FDILIFGMVAAFLVYRLRSVLGRRHGEERQRPNPFTPPPKAGQAPAPAESDNVVPLPDRG 67

Query: 67  KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
           +        E  PI   L + +R I +    F+ K FL  A+ ++E IV +F +G    +
Sbjct: 68  RPPEAPLPVETGPIS--LEEGLRQIRAADPTFNEKHFLQGAKAAFEMIVKAFADGDTPTL 125

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
             L+   VY  F +++  R++  +  ++ +   + + +  A ++     +TIR +   + 
Sbjct: 126 RPLLADDVYDGFAEAIRKRQAAGETRETRITAFESVDLKEARMDGRHAMVTIRFITHQVD 185

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
            + +    ++  DP+   +V+DIWTF RN    +PNW+L+ T++ 
Sbjct: 186 CTVNAAGDVVDGDPDEAIEVVDIWTFSRNTRSPDPNWLLVETRVP 230


>gi|163757477|ref|ZP_02164566.1| hypothetical protein HPDFL43_18742 [Hoeflea phototrophica DFL-43]
 gi|162284979|gb|EDQ35261.1| hypothetical protein HPDFL43_18742 [Hoeflea phototrophica DFL-43]
          Length = 234

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/218 (31%), Positives = 119/218 (54%), Gaps = 7/218 (3%)

Query: 22  FVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRD---ERGIITLG----KGKKKDNLDSI 74
            VF+QLR VLGK+TG+E+P       +     +D   +  ++TL     +  + D   ++
Sbjct: 17  IVFIQLRAVLGKRTGHERPPREQMERRDQTDAQDGIDDPKVVTLPRRGREAAEPDAFAAV 76

Query: 75  NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134
           +     G+ LNK +R++V     F+PK+F+  A  +YE IV ++ +G    ++ L+   V
Sbjct: 77  DAYAEPGSDLNKGLRELVKADPSFNPKEFVGGATMAYEMIVSAYADGDRKTLKSLLSREV 136

Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNL 194
           +  F  ++  R++  + V+S+ VGI+   II A ++     +T+RI+ Q ISA+ DKD  
Sbjct: 137 FDGFVSAIDEREARGETVRSNFVGIEKANIIQAEMKGTEANVTLRIISQLISATLDKDGE 196

Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           ++  D      V D+WTF R+    +PNW LI+T+  +
Sbjct: 197 VVEGDLVEVTDVNDVWTFTRDTRSRDPNWRLIATEADQ 234


>gi|84684638|ref|ZP_01012539.1| hypothetical protein 1099457000260_RB2654_13474 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667617|gb|EAQ14086.1| hypothetical protein RB2654_13474 [Rhodobacterales bacterium
           HTCC2654]
          Length = 219

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 10/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M S    +++ A I  F+ L+LR VLG + G EKP       + V    +      +  G
Sbjct: 1   MSSPIIQLIVLAAIAIFLILRLRDVLGTREGFEKPVVSRTESQRV---DNRGKFEVIEGG 57

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D  D + +   I     + +  +      F   DFLN AR +YE I+ +F  G++  
Sbjct: 58  PDTDITDHVEDPASI-----EALAKMKGAERSFAVGDFLNGARGAYEMILMAFEAGELDK 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183
           I+  +   VY+ F   +  R+ +   + ++ VG+ +MK++ A  ++      ITIR +G+
Sbjct: 113 IKPFLSDEVYESFATVVEQREKDGYKIDANFVGLREMKLVEAEFDDESREGEITIRFIGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             S   DK   ++  +P    +  D+WTF R +   NPNW L++T
Sbjct: 173 ITSVVRDKSGEIVEGNPTEVKRQKDVWTFARIMGSENPNWQLVAT 217


>gi|99082695|ref|YP_614849.1| import inner membrane translocase, subunit Tim44 [Ruegeria sp.
           TM1040]
 gi|99038975|gb|ABF65587.1| import inner membrane translocase subunit Tim44 [Ruegeria sp.
           TM1040]
          Length = 218

 Score =  257 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 114/227 (50%), Gaps = 11/227 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG + G EKP       +       +R    +   
Sbjct: 1   MESPLIELLVLAGIAVFLILRLKSVLGTREGFEKPPLASSETR-----APQRKFEVIEGS 55

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D +  ++E    G+  +K + D+    + F   +F+  AR +YE I+  F  G++  
Sbjct: 56  PDDDIIAYVDE----GSPQSKALSDMKRSDSSFQVAEFVQGARGAYEMILMGFETGELDG 111

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQ 183
           I+  +   ++Q F D++S R+     +++  +G+ +  II+A+ +   +T  IT+R VG+
Sbjct: 112 IQPFISDDIFQSFVDAVSAREDQGLTIEAEFIGVRETSIIDATFDTATSTAEITVRFVGE 171

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             SA  ++   ++  DP+   +  D WTF R +   +PNW+L++T  
Sbjct: 172 LTSAVRNRAGEIVEGDPKAVKRQKDTWTFSRQMGTGDPNWLLVATDA 218


>gi|254476055|ref|ZP_05089441.1| transporter, Tim44 family [Ruegeria sp. R11]
 gi|214030298|gb|EEB71133.1| transporter, Tim44 family [Ruegeria sp. R11]
          Length = 214

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 101/223 (45%), Gaps = 11/223 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              +L+ A I  F+ L+L+ VLG + G EKP +          +        +  G  +D
Sbjct: 1   MIQLLVLAGIAVFLILRLKSVLGTREGFEKPIAPPAERPSKRPE-----FEVIEGGPDQD 55

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
             D +    P G+   + +  +  V   F  +DF+  AR +YE I+ +F  G++  I+  
Sbjct: 56  ITDYV----PEGSAQAEDLAAMKKVEPSFQVRDFVQGARGAYEMILMAFERGELDDIQPY 111

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQFISA 187
           +   V+  F  +++ R+     +++  +G+ +  + + S +       IT+R V +  S 
Sbjct: 112 LAPDVFDSFVTAVAHREDQGLTIEADFIGVRETTLTDTSYDSVTGEAQITMRFVAEMTSV 171

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             +    ++  DP+   +  D W F R +  S+PNW L++T  
Sbjct: 172 VRNSAGEIVEGDPKAIKRQKDTWVFGRTMGSSDPNWFLVATDA 214


>gi|149204297|ref|ZP_01881264.1| transporter, Tim44 family protein [Roseovarius sp. TM1035]
 gi|149142182|gb|EDM30229.1| transporter, Tim44 family protein [Roseovarius sp. TM1035]
          Length = 219

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 10/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG + G E P             R  R    +  G
Sbjct: 1   MNSPILQLLVLAGIAIFLILRLKSVLGTRDGFEGP----TRSAPAPETRRRREFEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D +D +    P  +     + ++  +  DF    FL  AR +YE I+ +F  GK+  
Sbjct: 57  PDHDIVDHV----PEDSDAAAALAEMKRIEPDFSVTTFLQGARGAYEMILMAFERGKLDE 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           +   +D  VY+ F   +  R+     +++  +G+ ++ + +A  + +T    I++R VG+
Sbjct: 113 VTPFLDRDVYETFAQVVDAREQQGLTIEAEFIGVRELTLADARFDADTRRAEISVRYVGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            IS   D    ++   P    +  D+WT+ R +   +PNW L++T
Sbjct: 173 LISVVRDSTGEIVEGVPGQSKRQKDVWTYERVMGADDPNWRLVAT 217


>gi|188580934|ref|YP_001924379.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           populi BJ001]
 gi|179344432|gb|ACB79844.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           populi BJ001]
          Length = 242

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 14/240 (5%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSG---KYVFSKRDERGIITL 62
            DS D   L+F  +  FV  +LR VLG+KTG E+           +    + +   ++ L
Sbjct: 2   QDSFDATTLIFLALAVFVIWRLRSVLGQKTGTERSPFRPVERNRTEPPAGRGEGDNVVRL 61

Query: 63  GKGKKKDNL-----------DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY 111
               +                    +    + + + +  +V V   FDP+ FL  A+ +Y
Sbjct: 62  PGADRAQAGAQAGTATQTATRDWRGIAEPNSAVARGLEQVVQVEPGFDPRAFLEGAKGAY 121

Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171
           E IV +F +G    +  L+   V + F  ++S R+   +  +++ + ID  +I    ++ 
Sbjct: 122 ETIVTAFAKGDRKTLRALLSREVCEGFERAISEREKRRETAETTFISIDKAEIAAVEVKN 181

Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
               IT+R +   I+A+ D D  +I  + E   +V D+WTF R +   +PNW L++T  G
Sbjct: 182 RAAQITVRFLSNLITATRDADGKVIDGNAETGVEVPDVWTFARTLGSRDPNWQLVATDAG 241


>gi|85705737|ref|ZP_01036834.1| transporter, Tim44 family protein [Roseovarius sp. 217]
 gi|85669727|gb|EAQ24591.1| transporter, Tim44 family protein [Roseovarius sp. 217]
          Length = 219

 Score =  256 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 10/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+L+ VLG + G E P                R    +  G
Sbjct: 1   MNSPILQLLVLAGIAIFLILRLKSVLGTRDGFEGP----ARNAPTPETSRRREFEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D +D +    P  +     + D+  +  DF    FL  AR +YE I+ +F  GK+  
Sbjct: 57  PDHDIVDHV----PEDSEAAGALADMKRIEPDFSVTTFLQGARGAYEMILMAFERGKLDE 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183
           I   +D  VY+ F   + +R+    ++++  +G+ ++ + +A  +       IT+R VG+
Sbjct: 113 ITPFLDREVYETFAQVVDSREQQGLSIEAEFIGVRELSLFDAKFDAATRRAEITVRYVGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            +S   D +  ++   P    +  DIWT+ R +   +PNW L++T
Sbjct: 173 LVSVVRDSNGEIVEGAPGQSKRQKDIWTYERIMGSDDPNWRLVAT 217


>gi|254440619|ref|ZP_05054113.1| Tim44-like domain family [Octadecabacter antarcticus 307]
 gi|198256065|gb|EDY80379.1| Tim44-like domain family [Octadecabacter antarcticus 307]
          Length = 219

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 109/225 (48%), Gaps = 10/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    +L+ A I  F+ L+LR VLG + G EKP         + S+R    +  +  G
Sbjct: 1   MNSPVLQLLVLAGIAIFLILRLRNVLGTREGFEKPKVAPA----IPSRRPTPDLEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D  D ++      + + +V+  + +    F+ ++FL  AR +YE I+  F +G +  
Sbjct: 57  PDPDVTDYVD----ADSDVARVLTAMKTADRSFNVREFLRGARGAYEMILTGFEKGDIAE 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           I+  + S VY  F   +  R+ +  +V    +GI +  +++A  +E T    I+I+ + +
Sbjct: 113 IKPFLSSDVYDAFAGVVEAREKDGLSVDFKFIGISETTLVDAEFDETTKNAEISIKFLCE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             SA YDK   L         K  D+WTF R +   +PNW L++T
Sbjct: 173 STSAVYDKGGDLKEGSATDIKKQRDVWTFGRTMGTGDPNWFLVAT 217


>gi|144900161|emb|CAM77025.1| Mitochondrial import inner membrane translocase, subunit Tim44
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 243

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 104/218 (47%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           I+ FA +  F+ L+LR VLGK+TGNE+P     + K      D    +T  +   +   D
Sbjct: 10  IVFFAVVAVFLILRLRSVLGKRTGNEEPPRWTRTPKDDGETADNVIDLTRARRPVEAEPD 69

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
              ++      L +    I +    F    FL+ AR ++E IV +F  G   A+  L+  
Sbjct: 70  VTADVAATAGPLARGEAAIRARDPSFSNTGFLSGARMAFEMIVGAFAAGDKKALRPLLAD 129

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
           +VY+ F D++  R    + + + ++GI   +II A +      +T+R V + I+   D D
Sbjct: 130 QVYKPFCDAIDARARAGEELSTEIMGIKSAEIIEAIMVGTVAQVTVRFVSEQINVIKDLD 189

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             ++  DP     V D WTF R+    +PNW L +T+ 
Sbjct: 190 GRIVEGDPSRIVPVTDEWTFSRDTRSKDPNWHLSATRA 227


>gi|304392739|ref|ZP_07374679.1| import inner membrane translocase, subunit Tim44 [Ahrensia sp.
           R2A130]
 gi|303295369|gb|EFL89729.1| import inner membrane translocase, subunit Tim44 [Ahrensia sp.
           R2A130]
          Length = 230

 Score =  254 bits (650), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 107/232 (46%), Gaps = 14/232 (6%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
           D   LL      F+F +LR VLG + G EKP    ++            ++TL   K+ +
Sbjct: 2   DLFTLLPLLAAVFLFWKLRSVLGTRNGIEKPPYDPYTND---PNEAADNVVTLPGAKRAN 58

Query: 70  NLDS-----------INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
             D+           I +L      L + +  I S    FDP++FL   R +YE IV  F
Sbjct: 59  APDAEEDAGEAARKRIGKLAGKDKSLERGLLAIHSRDPGFDPEEFLQGGRMAYEMIVTGF 118

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
            +G    +E L+   VY+ F   +  R    + V +S VGID   I  A +  +   IT+
Sbjct: 119 ADGDKRTLENLLSREVYESFATVIDERSERGEKVNASFVGIDKAVIEGAEVLRDEAQITV 178

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           R V + ISA+ D  + +I  D +   +V D+WTF R +   +PNW L++T  
Sbjct: 179 RFVSEMISATLDSSDEVIEGDLQEVAEVTDVWTFARPVKSRDPNWKLVATDA 230


>gi|217977326|ref|YP_002361473.1| import inner membrane translocase subunit Tim44 [Methylocella
           silvestris BL2]
 gi|217502702|gb|ACK50111.1| import inner membrane translocase subunit Tim44 [Methylocella
           silvestris BL2]
          Length = 239

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 11/234 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFF-SGKYVFSKRDERG---IIT 61
            +S D   ++FA +  FV  +LR +LG +TG EKP    F +G+   +KR   G   +I 
Sbjct: 2   QNSFDVSTIIFALLAAFVVWKLRSILGARTGTEKPPRNPFIAGEPSAAKRPGEGEGKVIP 61

Query: 62  LGKGKKK-------DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
           L             D           G++    +  I +    F+ K FL  A+ +YE I
Sbjct: 62  LPGASAPIAQAAAADPSSRWKPHAEPGSKAWAGLDAIAAADRSFEIKSFLEGAKTAYEMI 121

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
           V  F +G    ++ L+D  VY  F  +L+ R+     +++S V ID+  I +A +     
Sbjct: 122 VIGFADGDRPMLQNLLDKSVYDSFVTALTEREKRGDKIETSFVAIDNGAIADAELNGRMA 181

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            I +R   Q I+A+ +    +I  +PE   ++ D W F R++   +PNW LIST
Sbjct: 182 EIAVRFSAQIITATRNAAGTVIEGNPEQVVEINDTWRFARDVGARDPNWRLIST 235


>gi|182680015|ref|YP_001834161.1| import inner membrane translocase subunit Tim44 [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182635898|gb|ACB96672.1| import inner membrane translocase subunit Tim44 [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 260

 Score =  254 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 20/248 (8%)

Query: 4   IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYV------------- 50
                 D  I++FA +  F+  +LR VLG + GNE+P      G++              
Sbjct: 2   THEPPFDMSIVIFALLAAFLIWKLRSVLGTRQGNEEPRDNSVPGQWPSLFSPKSQDPSQA 61

Query: 51  -------FSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDF 103
                        R       G   +   + +      +     +  I      F P  F
Sbjct: 62  NKNGAPGQPTFPNRPSPAGASGAPAEAGRNWSAFVEPNSPAAAGLEAIAKADPAFAPGPF 121

Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163
           L  AR++YE IV++F EG+  A+  L+   VY  F  +++ R+S    V+ + V +D  K
Sbjct: 122 LEGARHAYEMIVNAFAEGQRSALANLLVRDVYAGFEAAITERESQGHKVELTFVSLDAAK 181

Query: 164 IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223
           I  A++      IT+R   + I  + D    ++   P+    V D+WTF R I   +PNW
Sbjct: 182 IEEAALFHQIAEITLRYKAKMIKVTRDAQGAVVEGSPDHVVDVDDLWTFERMIGSQDPNW 241

Query: 224 VLISTKLG 231
            L +TK G
Sbjct: 242 KLAATKTG 249


>gi|13473820|ref|NP_105388.1| hypothetical protein mlr4544 [Mesorhizobium loti MAFF303099]
 gi|14024571|dbj|BAB51174.1| mlr4544 [Mesorhizobium loti MAFF303099]
          Length = 211

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 63/211 (29%), Positives = 114/211 (54%), Gaps = 8/211 (3%)

Query: 30  VLGKKTGNEKPFSGFFSGK--YVFSKRDERGIITLG------KGKKKDNLDSINELFPIG 81
           +LG++TG+E+P    +S       + +    +++L       +    D   +I+      
Sbjct: 1   MLGRRTGSERPPFDPYSAARTDKDATQKPENVVSLPRKRLPGEPAPADAYTAIDAFAKPD 60

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
           T LNK +R I      FDPK F++ A+ +YE IV ++ +G    ++ L+   V+  F  +
Sbjct: 61  TDLNKGLRAIKDNDPSFDPKGFVDGAKMAYEMIVMAYADGDRKTLKNLLSREVFDGFVAA 120

Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201
           +  R++  + ++SS VGID   I++A ++    ++T+RI+ + ISA+ DK   +I  DPE
Sbjct: 121 IGEREAKSEKIQSSFVGIDKADIVSAEMKGGEAHVTLRIISELISATRDKAGTVIDGDPE 180

Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
              +V D+WTF R+    +PNW LI+T+  +
Sbjct: 181 TVAEVKDVWTFARDTRSRDPNWKLIATEEED 211


>gi|312115344|ref|YP_004012940.1| import inner membrane translocase subunit Tim44 [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311220473|gb|ADP71841.1| import inner membrane translocase subunit Tim44 [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 233

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 112/236 (47%), Gaps = 13/236 (5%)

Query: 6   MDSGDFLI--LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
           M S  F +  +L   +   +FL+LR VLG++TG+E+     ++     +      ++ L 
Sbjct: 1   MTSEIFDLTNILLLAVAVAIFLRLRSVLGRRTGDEETRLDNYARDAAPT---RDNVVPLP 57

Query: 64  KGKKKDNLDSINELF--------PIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115
           + + +                  P  + +   +R I +    FD   F+N A+ +YE+I+
Sbjct: 58  RAEPRPGGAPSAGPSVDERLGNVPADSAVRAPLRQIATSDPSFDTASFVNGAKIAYESII 117

Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY 175
            ++ +G    +  L+   V+  FN  ++ R+++ + V+   +GI   +I+ A +      
Sbjct: 118 TAYAKGDRETLRHLLAPEVFDSFNVVINDREASGETVEFHFIGISSSEIVEAQLLGRVAQ 177

Query: 176 ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           + +R V   ++A+ DK   ++  D +   +V DIWTF R++   NPNW L++T   
Sbjct: 178 VKVRFVSDLVTATRDKHGEVVDGDDKAVRQVTDIWTFSRDVSSPNPNWQLVATDAA 233


>gi|110677837|ref|YP_680844.1| hypothetical protein RD1_0444 [Roseobacter denitrificans OCh 114]
 gi|109453953|gb|ABG30158.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 220

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 107/225 (47%), Gaps = 10/225 (4%)

Query: 7   DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
            S    +L+ A I  F+  +L+ VLG + G E       +      +   R    +  G 
Sbjct: 3   SSPLIQLLVLAGIAVFLIFRLKNVLGTRDGFE----PGPAQAPTSDRSPTRDFEVIEGGP 58

Query: 67  KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
             D  D ++E     +   + + ++  +   F+  +FL  AR +YE IV  +  G++  I
Sbjct: 59  DLDITDHVDEH----SDAAEALANMKRLEPGFNVTEFLGGARGAYEMIVMGYENGELADI 114

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQF 184
           +  +   +Y+ F D ++ R+     ++++ +G+ ++K+I+A+++ +T    +TIR   + 
Sbjct: 115 QPFLAEDIYESFVDGVAAREDQGLTIEANFIGVRELKLIDATLDPDTNEAELTIRFTAEL 174

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            SA  + +  +I        +  D W+F R +   +PNW+L+ST 
Sbjct: 175 TSAVRNSEGEIIEGSLTDVKRQKDTWSFARPMGSDDPNWILVSTD 219


>gi|319406501|emb|CBI80142.1| Tim44 domain protein [Bartonella sp. 1-1C]
          Length = 230

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 67/210 (31%), Positives = 118/210 (56%), Gaps = 4/210 (1%)

Query: 24  FLQLRGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFP 79
           F+QLR VLGK+ G EKP    +SG         K D+   +      +K +   I+ + P
Sbjct: 18  FVQLRNVLGKRVGFEKPPFDSYSGYTKKPIEVEKNDKIVSLPDQSSSQKGDFSEIDAIAP 77

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
            G++LN  +R I      F P+ F+N  +  YE I+ +F +G  + +++ + S V++ F 
Sbjct: 78  EGSKLNSGLRSIRQFDPSFSPQFFVNGVQIVYEIIMTAFAQGDRNRLKEHLSSDVFESFC 137

Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199
           +++  R+ N + ++ + VGI  ++ I A +++    +T+RI+ + ISA+Y++    I  +
Sbjct: 138 EAIELREKNNERIQFTFVGISKIEFIAAEMQKEEALLTVRIISEMISATYNEQEECIEGN 197

Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           PE   ++ DIWTF+RNI   NPNW L +T+
Sbjct: 198 PEAIIEIRDIWTFIRNITSKNPNWKLFATE 227


>gi|163732954|ref|ZP_02140398.1| hypothetical protein RLO149_09850 [Roseobacter litoralis Och 149]
 gi|161393489|gb|EDQ17814.1| hypothetical protein RLO149_09850 [Roseobacter litoralis Och 149]
          Length = 220

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 107/227 (47%), Gaps = 11/227 (4%)

Query: 6   MDS-GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK 64
           M+S     +L+ A I  F+  +L+ VLG + G E       S   +      R    +  
Sbjct: 1   MNSSPLIQLLVLAGIAVFLIFRLKNVLGTRDGFE----PGPSQTPMSDSAPMRDFEVIEG 56

Query: 65  GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
           G   D  D + E     +   + + ++  +   F+  +FL  AR +YE IV  +  G++ 
Sbjct: 57  GPDLDITDHVEEN----SDAAEALANMKRLEPGFNVTEFLGGARGAYEMIVMGYENGELA 112

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVG 182
            I+  +   +Y+ F D ++ R+     +++S +G+ ++K+++A+++   N   +TIR   
Sbjct: 113 DIQPFLAEDIYESFVDGVAAREDQGLTIEASFIGVRELKLMDATLDPETNEGELTIRFTA 172

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           +  SA  + +  +I        +  D W+F R +   +PNW+L+ST 
Sbjct: 173 ELTSAVRNSEGEIIEGSLTEVKRQKDTWSFARPMGSDDPNWILVSTD 219


>gi|163797060|ref|ZP_02191015.1| hypothetical protein BAL199_11141 [alpha proteobacterium BAL199]
 gi|159177576|gb|EDP62129.1| hypothetical protein BAL199_11141 [alpha proteobacterium BAL199]
          Length = 222

 Score =  249 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 115/224 (51%), Gaps = 4/224 (1%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
               I+L A +  FV  +LR VLG++TG+E+  +  F+      + ++ G I     +  
Sbjct: 2   PYLDIILLAMLAGFVIFKLRSVLGRRTGHERRPTDPFA---ESPETNDNGNIVRLPDRSA 58

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
           +++D  ++  P G+ +   +  I      FD + FL  A++++  IV++F +G V  +  
Sbjct: 59  ESVDGSDDDVP-GSSMAAGIMQIKLADDGFDERQFLQGAKSAFAMIVEAFAKGDVDGLRP 117

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
           L+   +Y  F  ++   +   +  ++++V I    ++ AS+E +   +T+  V + +  +
Sbjct: 118 LLSRELYGGFASAIEACEKAGEIQETTIVTIRSADVVEASLENSVAKVTVEFVTEQVKVT 177

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
              D  +I  DP+    + DIWTF R+I   +PNW L++T++ E
Sbjct: 178 RSSDGEVIDGDPDRIDILTDIWTFARDIGNRDPNWELVATRVPE 221


>gi|294675588|ref|YP_003576203.1| import inner membrane translocase subunit Tim44 [Rhodobacter
           capsulatus SB 1003]
 gi|294474408|gb|ADE83796.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
           capsulatus SB 1003]
          Length = 219

 Score =  247 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 10/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M    F +++ A I  F+ L+L+ VLG + G E               R       +  G
Sbjct: 1   MSPALFQLIVLAAIAIFLILKLKSVLGTREGYEDEPMPV----EAPGPRAADRFEVIEGG 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D +D +    P G+     +  +  V   F+   FL  ++ +YE I+ +F  G + A
Sbjct: 57  PDHDIIDHV----PEGSDAAVALAQMKRVEPTFNVGAFLQGSKVAYEMILMAFERGDLSA 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183
           + + +   V + F  +++ R+     V++S +G+ ++ +  AS  E      +T+R  G+
Sbjct: 113 VRRFLAPEVLEAFETAVADRQRQGLTVEASFLGLRELVLTEASFNESSREAEVTVRFGGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            IS + D +  ++  DP+   K  D WTF R +  S+PNW L++T
Sbjct: 173 LISVARDANGQIVEGDPKAPRKQRDSWTFARVMGSSDPNWQLVAT 217


>gi|159045985|ref|YP_001534779.1| import inner membrane translocase [Dinoroseobacter shibae DFL 12]
 gi|157913745|gb|ABV95178.1| import inner membrane translocase [Dinoroseobacter shibae DFL 12]
          Length = 221

 Score =  247 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 104/225 (46%), Gaps = 8/225 (3%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S    IL+   +  F+ L+LR VLG + G EK        +   + R  R    +  G
Sbjct: 1   MNSNMLQILVLLGVAVFLILRLRSVLGTREGFEKKPVPLDGPERDVTPR--RDFEVIEGG 58

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              D  D +    P G+   K +  +      F+  +FL  A+ +YE I+ SF  G +  
Sbjct: 59  PDTDITDHV----PDGSDSAKALAAMKMAEPGFNVTEFLGGAKGAYEWILMSFENGDMDD 114

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           ++  +   + + F++ +  R      V++  VG+ +  ++ A+ + +T    +T+R VG+
Sbjct: 115 VQGFLSEELSEAFSEVIEQRNEQGLTVEAEFVGVRETTLVEAAFDRDTREGEVTVRFVGE 174

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
                 + +  ++  DP    +  D+WTF R +   +PNW L++T
Sbjct: 175 LTFVVRNAEGEIVEGDPTEIKRQKDVWTFARVMGSDDPNWRLVAT 219


>gi|319403587|emb|CBI77169.1| conserved hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 230

 Score =  247 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 67/208 (32%), Positives = 116/208 (55%), Gaps = 4/208 (1%)

Query: 26  QLRGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIG 81
           QLR VLGK+ G EKP    +SG         K D+   +      +K +   I+ +   G
Sbjct: 20  QLRNVLGKRIGFEKPPFDSYSGYTKKPVEVEKNDKIVSLPDQSSSQKSDFSEIDAIASEG 79

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
           ++LN  +R I      F P+ F+N  +  YE I+ +F +G  + +++ + S V++ F ++
Sbjct: 80  SKLNSGLRSIRQFDPSFSPQFFVNGVQIVYEIIMTAFAQGDRNQLKEHLSSDVFESFCEA 139

Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201
           +  R+ N + ++ + VGI  ++ I A +++   ++T+RIV + ISA+Y++    I  +PE
Sbjct: 140 IELREKNNERIQFTFVGISKIEFIAAEMQKEEAFLTVRIVSEIISATYNEQEECIEGNPE 199

Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTK 229
              ++ DIWTFVRNI   NPNW L +T+
Sbjct: 200 AIIEIRDIWTFVRNITSKNPNWKLFATE 227


>gi|315122039|ref|YP_004062528.1| hypothetical protein CKC_01445 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495441|gb|ADR52040.1| hypothetical protein CKC_01445 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 231

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 154/231 (66%), Positives = 182/231 (78%), Gaps = 4/231 (1%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYV----FSKRDERGIIT 61
           M  GDFLILL  FI  FV L+LR  LGK+TG+EKP SGF   +        K D   +++
Sbjct: 1   MYLGDFLILLCFFIAVFVILKLRSALGKRTGHEKPLSGFSPEQRKKSIFSPKGDGWNVVS 60

Query: 62  LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
           L KGKK+D LDSIN LFP+GTRLNKV RDIVS+Y+ FDPKDFLN  R+SY  IVDSFFEG
Sbjct: 61  LNKGKKEDVLDSINGLFPVGTRLNKVFRDIVSIYSGFDPKDFLNGVRDSYGVIVDSFFEG 120

Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
            +  IEKL+DS+VYQDF DSL  +KS+EK +KSSLVG+DD+KI+NAS+E N +YIT RIV
Sbjct: 121 NILKIEKLIDSKVYQDFADSLLIQKSSEKVIKSSLVGLDDLKIVNASVEGNNIYITTRIV 180

Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           GQFISASYDK+N LI+ DPEIFGKV+D+WTFVRNI  SNPNW+LISTK GE
Sbjct: 181 GQFISASYDKNNALIAGDPEIFGKVVDVWTFVRNISSSNPNWILISTKPGE 231


>gi|83950785|ref|ZP_00959518.1| transporter, Tim44 family protein [Roseovarius nubinhibens ISM]
 gi|83838684|gb|EAP77980.1| transporter, Tim44 family protein [Roseovarius nubinhibens ISM]
          Length = 214

 Score =  245 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 11/221 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              +L+ A I  F+ L+LR VLG + G E P       +   +    +G   +  G   D
Sbjct: 1   MLQLLVLAGIAIFLLLRLRSVLGTRDGFEPP-----RSELPGAPDRRQGFEVIEGGPDLD 55

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
             D +    P  +     + ++  +   F   +FL+ +R +YE I+ SF  GK+  I   
Sbjct: 56  ITDHV----PEDSDAAAALAEMKRIEPSFSVSEFLSGSRQAYEWILMSFENGKLDEIVPF 111

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISA 187
           +   V++ F   +  R+     V++   G+ D+ +I+A++++ T    IT++ +G+  S 
Sbjct: 112 LSPDVHEAFAQVIDARQEKNLTVEAEFYGVRDVTLIDAALDDTTKAAEITVKFLGELSSV 171

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             ++   +I   P    +  D WTF R +   +PNW L++T
Sbjct: 172 VRNEQGEIIEGTPGEPKRQKDTWTFERVMGSDDPNWRLVAT 212


>gi|288959728|ref|YP_003450069.1| mitochondrial import inner membrane translocase [Azospirillum sp.
           B510]
 gi|288912036|dbj|BAI73525.1| mitochondrial import inner membrane translocase [Azospirillum sp.
           B510]
          Length = 231

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 106/224 (47%), Gaps = 2/224 (0%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
             I++FA I  F+  +LR VLG++TG E+     FS     +K D    +      + D 
Sbjct: 8   IEIVIFAMIAAFLVYRLRSVLGRRTGEERQRPNPFSAAPGAAKPDNVVSLPQRNQPRPDA 67

Query: 71  LDSINELFP-IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
               + +       L   +  I +    FD K FL+ A+ ++  IVD+F  G    +  L
Sbjct: 68  APGQDVMASDEPLSLAASIDQIRAADPTFDEKHFLDGAKAAFAMIVDAFARGDTATLRPL 127

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE-ENTVYITIRIVGQFISAS 188
           +   VY  F   +  R++  +  ++ +  + + +++ A ++   T  +T+R+V   ++  
Sbjct: 128 LADDVYDGFARVIRDRQAAGEQHETRIEQVREAEVVEAKLDAGRTARVTVRLVSDQVNVV 187

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            D++  ++  DP+   +  D+WTF R++   +PNW L+  +  +
Sbjct: 188 RDRNGAVVDGDPKALVENTDVWTFARDLRSRDPNWALVEVRPVQ 231


>gi|83594937|ref|YP_428689.1| hypothetical protein Rru_A3608 [Rhodospirillum rubrum ATCC 11170]
 gi|83577851|gb|ABC24402.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
          Length = 219

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 114/222 (51%), Gaps = 11/222 (4%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
             I+ FA I  F+ L+LR VLG++TG E+     F+      +  +  +I L   K    
Sbjct: 8   IDIIFFAMIAAFLVLRLRSVLGRRTGEEQRRPDPFAQ----PESAQDNVIDLSGRK---- 59

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
                   P    L   +  I      F P+ FL  A+ ++E I+ ++ +G    ++ L+
Sbjct: 60  ---AVAGRPGDGTLAGGLTQIQLTDPSFSPEGFLIGAKAAFEMILMAYAKGDKAVLKPLL 116

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              V+Q+F+ ++  R+  ++ +++ LVG   ++I+ A ++     +T++ V + +++  D
Sbjct: 117 AGEVFQNFSRAIDEREQADETMETDLVGFKSVEILRAGMDGQDALVTVKFVTEQVNSVRD 176

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           K + ++  +P    +V DIWTF R+   ++PNW LI+T++ E
Sbjct: 177 KSDTVVDGNPNQVEEVTDIWTFRRDTVSNDPNWDLIATQVPE 218


>gi|319898295|ref|YP_004158388.1| hypothetical protein BARCL_0116 [Bartonella clarridgeiae 73]
 gi|319402259|emb|CBI75797.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
          Length = 230

 Score =  242 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 111/206 (53%), Gaps = 4/206 (1%)

Query: 28  RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83
           R VLGK+ G EKP    +SG    +      D    +      +K +   I+ + P G+ 
Sbjct: 22  RNVLGKRIGFEKPPFDSYSGYPKKQIEVETTDNIVSLPDQSSSQKSDFSEIDAIAPEGSE 81

Query: 84  LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
           LN  +R I      F P+ F+N  +  YE I+ +F +G    +++ + S V++ F  ++ 
Sbjct: 82  LNVSLRTIRQFDPSFSPRFFMNGVQIVYEMIMTAFAQGDRVKLKEHLSSDVFESFCAAIE 141

Query: 144 TRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203
            R+ N + ++ + VGI+ ++ I A +++   ++T+RIV + ISA+Y++    I  +PE  
Sbjct: 142 QREKNNERIQFTFVGINRIEFIAAEMQKKEAFLTVRIVSEMISATYNEQEECIDGNPEAI 201

Query: 204 GKVIDIWTFVRNIPPSNPNWVLISTK 229
            ++ DIWTFVRN    +PNW L +T+
Sbjct: 202 IEIRDIWTFVRNTTSQSPNWKLFATE 227


>gi|332186336|ref|ZP_08388081.1| tim44-like domain protein [Sphingomonas sp. S17]
 gi|332013704|gb|EGI55764.1| tim44-like domain protein [Sphingomonas sp. S17]
          Length = 257

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 107/222 (48%), Gaps = 7/222 (3%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F ++L A +  F+ L+L  VLGK+TG+E+            S  D    + L +  +  
Sbjct: 43  LFYVVLLAMVALFLALRLYSVLGKRTGHEQQPLPR-------SADDRARPVVLPRAAEPA 95

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
              +      I  R  + +R I++    FD   FL  A+++Y   +++F++G   A+ +L
Sbjct: 96  QSPAPVANRNIDPRAEQGLRAIIAGEPGFDVNQFLGGAQSAYRMTLEAFWKGDEQALAEL 155

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           VD+ V   F ++++ R+   + + + L+ +D  KI+++ +      IT+R     ++ + 
Sbjct: 156 VDTDVLGAFAEAIAQRQEAGETLDNRLIRVDSAKIVDSQLAGRDARITVRFDADIVAVTR 215

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           D +  +I+       +  DIWTF R +   +PNW L+ T   
Sbjct: 216 DAEGQVIAGSLSDAVETHDIWTFARTLKSGDPNWKLVDTDEA 257


>gi|319405014|emb|CBI78623.1| Tim44 domain protein [Bartonella sp. AR 15-3]
          Length = 230

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 115/206 (55%), Gaps = 4/206 (1%)

Query: 28  RGVLGKKTGNEKPFSGFFS--GKYVFSKRDERGIITLGKGK--KKDNLDSINELFPIGTR 83
           R VLGK+ G EKP    +S   K    +     I++L      KK+N   IN + P  + 
Sbjct: 22  RNVLGKRIGFEKPPFDSYSKHSKKQIERETSDNIVSLPDQSSSKKNNFSEINTIAPEKSA 81

Query: 84  LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
           LN  +R I    + F P+ F+N  +  YE I+ +F +G    +++ + S V++ F +++ 
Sbjct: 82  LNSGLRAISLADSSFSPQFFINGVQIVYEIIMTAFAQGNRDQLKEHLSSDVFESFCEAIE 141

Query: 144 TRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203
            R+ N + ++ + VGI+ ++ I A +++   ++T+RIV + ISA+Y++    I  DPE  
Sbjct: 142 QREKNNERIQFTFVGINKIEFIAAEMQKEEAFLTVRIVSEIISATYNEREEYIDGDPEAI 201

Query: 204 GKVIDIWTFVRNIPPSNPNWVLISTK 229
            ++ DIWTFVRN    NPNW L +T+
Sbjct: 202 IEIRDIWTFVRNTTSKNPNWKLFATE 227


>gi|154251701|ref|YP_001412525.1| import inner membrane translocase subunit Tim44 [Parvibaculum
           lavamentivorans DS-1]
 gi|154155651|gb|ABS62868.1| import inner membrane translocase subunit Tim44 [Parvibaculum
           lavamentivorans DS-1]
          Length = 247

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 103/231 (44%), Gaps = 25/231 (10%)

Query: 23  VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS--------- 73
           VFL+LR VLG++TG+E+P    +S            ++TL K  + D   S         
Sbjct: 19  VFLKLRSVLGRRTGHERPPYDPYSENPAPG---NDKVVTLPKRGRTDAPASGARDRVIDA 75

Query: 74  -------------INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
                           +   G+ L   +  I      FD + FL+ AR +YE IV +F  
Sbjct: 76  AGDPFANAGARFRWRGVTEEGSPLAGALDAIADADRTFDTESFLSGARMAYEMIVTAFAA 135

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
           G    ++ L+   VY  F  ++S R+     +  S +GID   I   S++     +T+  
Sbjct: 136 GDRATLKPLLSDDVYASFEGAISAREKAGLQIDQSFIGIDKAAITGGSLDGTRARLTVSF 195

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
             +  S++ + D +++  DP    ++ D+WTF R++   +PNW L++T   
Sbjct: 196 RSELTSSTKNSDGVVVEGDPVTVREITDVWTFERDLRNRDPNWKLVATGAA 246


>gi|85709415|ref|ZP_01040480.1| hypothetical protein NAP1_11058 [Erythrobacter sp. NAP1]
 gi|85688125|gb|EAQ28129.1| hypothetical protein NAP1_11058 [Erythrobacter sp. NAP1]
          Length = 219

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 110/222 (49%), Gaps = 4/222 (1%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              I++ A I  F+ L+L  VLG++  +E+        ++    + +      G+  +  
Sbjct: 2   ILEIVILAMIAAFLGLRLYSVLGRRAEHEEESVP---QRFDAGDKPQAQPPIAGQPAQPA 58

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
              SI EL  +   + + +R+I S    FD   F++ A+ +YE +++ F+EG    + +L
Sbjct: 59  PQRSI-ELEGVMPAVERGVREIASADRSFDIGQFMDGAKGAYEMVLEGFWEGDKDTLREL 117

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
            D  VY  F+ ++  R+     + + L+ I++ +I +AS++     I +  V    + + 
Sbjct: 118 CDDDVYAGFSAAIDAREEAGHTLDNKLIRIEETRIHSASMDGRMARIAVLFVADIAAVTR 177

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           DKD ++++   +   +  D+WTF RNI   +PNWVL  T  G
Sbjct: 178 DKDGVVVAGSLDDAIESRDVWTFSRNIGSRDPNWVLDETDEG 219


>gi|119385510|ref|YP_916566.1| import inner membrane translocase, subunit Tim44 [Paracoccus
           denitrificans PD1222]
 gi|119375277|gb|ABL70870.1| import inner membrane translocase, subunit Tim44 [Paracoccus
           denitrificans PD1222]
          Length = 218

 Score =  235 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 10/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M +    +L+ A I  F+ L+LRGVLG + G E P         +  +  +R    +  G
Sbjct: 1   MSNPLLQLLVLAAIAVFLILRLRGVLGTRDGFESPR--------IPEEPVQRRRFDVIDG 52

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
             +     I +    G+   K + ++  +  DF    FL+ A+++YE I+ +F  G +  
Sbjct: 53  TAEAGDSDITDHAEPGSPAAKALAEMKRIEPDFAVGPFLSGAKSAYEMILMAFERGDLSE 112

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183
           +   +   V + F   +  RK+     ++  +G  +  +  A     T    +++R VG+
Sbjct: 113 VRGFLAPPVAEAFESVIEDRKARNLTTEAQFLGTRETALAGAEFTPATGMAELSVRFVGE 172

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            I A+ D D  +I  DP+   K  D WTF R +   +PNW L++T
Sbjct: 173 MIVATRDADGNVIEGDPKAARKQRDTWTFARRMGQDDPNWQLVAT 217


>gi|21328722|gb|AAM48728.1| conserved hypothetical protein [uncultured marine proteobacterium]
          Length = 216

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 102/221 (46%), Gaps = 11/221 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              +L  A I  ++ L+LRGVLG + G+E P +   +        D   +  +  G  +D
Sbjct: 3   IIQLLALAGIAIYLILKLRGVLGTRDGHEGPRANIVARAD-----DRPKLEVIDGGPDQD 57

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
             D   E     +   + +  +      F   +FL  ++++YE I+ +F  G + +++  
Sbjct: 58  ITDHAAE----DSDAARALLGMKHAEPSFSVTEFLYGSKSAYEMILMAFENGDLGSVKAF 113

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISA 187
           ++  VY  F   +  RK+   ++++  +G+ D  ++ A+ +  T    I +R + +  S 
Sbjct: 114 LNQDVYDAFASVVEARKAQGLSIEAEFIGVRDTGLMGATFDPKTNAAEIDVRFICELTSV 173

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             + D  +I  +     +  D+WTF R +   +PNW LI+T
Sbjct: 174 LRNSDGDIIEGNETEVKRQRDVWTFGRTMGADDPNWQLIAT 214


>gi|103487499|ref|YP_617060.1| import inner membrane translocase, subunit Tim44 [Sphingopyxis
           alaskensis RB2256]
 gi|98977576|gb|ABF53727.1| import inner membrane translocase, subunit Tim44 [Sphingopyxis
           alaskensis RB2256]
          Length = 221

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 7/223 (3%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           F I+L A I  F+ ++L  VLGK+TG+E+              R     I L  G+    
Sbjct: 4   FSIVLLAMIAAFLGMRLYSVLGKRTGHEQEPVLPRRDD-----RSAPAPIRLDDGETSAI 58

Query: 71  LDSINELFPI--GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
           + S  +   +         +R +++   +FD   F+  AR +Y  I+++F++G    +  
Sbjct: 59  VTSATDTAGLVYEPSAEAGLRQLLANDRNFDAGRFMEGARAAYRMILEAFWKGDRETLRD 118

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
           L D   Y  F +++  R++  + +++ L+ ID  KI  A +      IT+R      + +
Sbjct: 119 LCDDDSYDAFVEAIDAREARGETLENRLIRIDSAKITAAELNRGEARITVRYHADISAIT 178

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
            D D  LI+       +  D+WTF R I  ++PNW+L   +  
Sbjct: 179 RDADGKLIAGSMSDAAQTDDLWTFRRQIGSNDPNWLLDEAESA 221


>gi|114769764|ref|ZP_01447374.1| transporter, Tim44 family protein [alpha proteobacterium HTCC2255]
 gi|114549469|gb|EAU52351.1| transporter, Tim44 family protein [alpha proteobacterium HTCC2255]
          Length = 218

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 11/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M    F +++   I  FV L+LR VLG ++G E       + +   +  +E         
Sbjct: 1   MSDPMFQLVILGVIALFVILRLRSVLGTRSGFEPTNVPKPTFQKEKTPTEEN-------- 52

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                   I +   + +   K +  +    ++F   +F+  A  +YE I+ +F EG    
Sbjct: 53  -DNKIDRDIADYVSVDSPSGKALSQMKKAESNFLVTEFIQGAGQAYEMILIAFEEGDRDG 111

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQ 183
           +   +   VY  F   ++ R+  + N+ ++ +G+ ++K+ +A  +       IT+ +V +
Sbjct: 112 LRPFLADDVYDSFESVITEREKAQLNIDATFIGLREIKLTSAEYDWRAKEGEITLSLVAE 171

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             +   + ++ +I  D     K  D WTF R +   NPNW L++T
Sbjct: 172 LTTVVKNINDEIIEGDKNKIKKQKDTWTFSRIMGNDNPNWTLVAT 216


>gi|161170260|gb|ABX59230.1| uncharacterized protein conserved in bacteria [uncultured marine
           bacterium EB000_55B11]
 gi|297183789|gb|ADI19912.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 218

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 11/225 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M    F +++   I  FV L+LR VLG ++G E       + +   +  +E         
Sbjct: 1   MSDPMFQLVILGVIALFVILRLRSVLGTRSGFEPTNVPKPTFQKEKTPTEEN-------- 52

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                   I +   + +   K +  +    ++F   +F+  A  +YE I+ +F EG    
Sbjct: 53  -DNKIDRDIADYVSVDSSSGKALSQMKKAESNFLVTEFIQGAGQAYEMILIAFEEGDRDG 111

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQ 183
           +   +   VY  F   ++ R+  + N+ ++ +G+ ++K+ +A  +       IT+ +V +
Sbjct: 112 LRPFLADDVYDSFESVITEREKAQLNIDATFIGLREIKLTSAEYDWRAKEGEITLSLVAE 171

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             +   + ++ +I  D     K  D WTF R +   NPNW L++T
Sbjct: 172 LTTVVKNINDEIIEGDKNKIKKQKDTWTFSRIMGNDNPNWTLVAT 216


>gi|94498195|ref|ZP_01304756.1| import inner membrane translocase, subunit Tim44 [Sphingomonas sp.
           SKA58]
 gi|94422325|gb|EAT07365.1| import inner membrane translocase, subunit Tim44 [Sphingomonas sp.
           SKA58]
          Length = 217

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 109/222 (49%), Gaps = 5/222 (2%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            ++I++ A I  F+ L+L  VLGK+TG+E+  +   +         + G    G G   D
Sbjct: 1   MYVIVILAMIAGFLALRLYSVLGKRTGHEQEPALRPAEDRAKVTVLQPGPTNHGGG---D 57

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
            +     L   G      +R +++   +FD   F+  AR++Y+ ++++F+ G    +  L
Sbjct: 58  TVRLAEGLIAPGAET--GVRTLIATDRNFDVPQFVEGARSAYKMVLEAFWRGDREELAWL 115

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
            D+ V   F D+++ R+++   + + LV I+  +II A++ + T  I +R      + + 
Sbjct: 116 CDADVLASFEDAIAAREADGHVLDNRLVRIEKAQIIEATVRDGTAEIAMRFEADIAAVTR 175

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           D+D  +I+          DIWTF R+I  ++PNW L  T   
Sbjct: 176 DRDGNVIAGSMTDAIDTKDIWTFTRDIRSADPNWKLSETDEA 217


>gi|296283090|ref|ZP_06861088.1| hypothetical protein CbatJ_05690 [Citromicrobium bathyomarinum
           JL354]
          Length = 220

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 105/222 (47%), Gaps = 3/222 (1%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            + I++ A I  F+ L+L  VLG++  +E+            +        T    +   
Sbjct: 2   IYEIVILAMIAVFLGLRLYSVLGRRAEHEEEPVPHRFDAKDKAGLAAAPQTTQAPPRAVT 61

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
             ++  ++ P+   + + ++ I++    FD   FL  A+ +Y  I++++++G    +  L
Sbjct: 62  EQEAKPDVLPV---VERGVQSIIAADRGFDITSFLEGAKGAYGMILEAYWKGDKETLRDL 118

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
            D  VYQ F  ++  R+   + + + L+ I+D  I +A +E     IT+R V    + ++
Sbjct: 119 CDESVYQGFAQAIDAREEAGETLDNRLIRIEDATIRDAELERKEARITVRFVADIAAVTH 178

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           D+D  +++   +   +  DIWTF R +    P+W L+ T  G
Sbjct: 179 DRDGNMVAGSLDDAIESRDIWTFARRVDSRTPDWQLVETDEG 220


>gi|84514927|ref|ZP_01002290.1| hypothetical protein SKA53_11923 [Loktanella vestfoldensis SKA53]
 gi|84511086|gb|EAQ07540.1| hypothetical protein SKA53_11923 [Loktanella vestfoldensis SKA53]
          Length = 211

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 56/216 (25%), Positives = 99/216 (45%), Gaps = 10/216 (4%)

Query: 15  LFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSI 74
           + A I  F+ L+LRGVLG + G EKP       +   + R +     +  G   D  D +
Sbjct: 2   VLAGIAVFLILRLRGVLGTREGFEKPAVT----RQETTPRRKHDFDVIEGGPDLDITDHV 57

Query: 75  NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134
                      K +  +  V  DF+  +FL  AR +YE I+ +F    + +I   +   V
Sbjct: 58  QADS----AAAKALAAMKRVDPDFNVTEFLGGARGAYEMILMAFENSDLDSIVPFISHDV 113

Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISASYDKD 192
           Y+ F   +  R+     V +S +GI DM + +A  +E T    +++R   +  S   + +
Sbjct: 114 YEAFASVVDDRQRQGLTVTASFIGISDMTLAHAEFDEATKEGEVSVRFKSEMTSVVRNAE 173

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             ++    +   +++D WTF R +   +PNW L++T
Sbjct: 174 GEVVEGSTKEIKRLVDTWTFARKMDAGDPNWKLVAT 209


>gi|323135818|ref|ZP_08070901.1| import inner membrane translocase subunit Tim44 [Methylocystis sp.
           ATCC 49242]
 gi|322398909|gb|EFY01428.1| import inner membrane translocase subunit Tim44 [Methylocystis sp.
           ATCC 49242]
          Length = 233

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 102/230 (44%), Gaps = 6/230 (2%)

Query: 7   DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFS----KRDERGIITL 62
           +  D  +++FA +  FV  +LR VLG +   + P    F  +               +  
Sbjct: 6   EPFDPSLVVFAALAVFVIWKLRSVLGVRVDRDAPPPAQFQPRRPSPAGATPLPGAAPLDD 65

Query: 63  GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
           G   +++   S   +   G      +  I +    FD + FL+ AR +Y+ IV +F  G 
Sbjct: 66  GAAARRNVPASWEGVAEKGGAAASGLDAIAAADPRFDGQAFLDGARRAYDMIVSAFARGD 125

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
              +  L+   V+  F   ++ R+ N + ++++++ ID   + +A        IT+R   
Sbjct: 126 RDQLRPLLSKEVFDGFAAEIARREENGETMETAVIAIDSALVESARAAPRLNEITVRFAT 185

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           + ++   +K+   I         V+++WTF R+   S+PNW L++T+  E
Sbjct: 186 RLMNLRRNKEGETIEGGHT--IPVVELWTFARDPRASDPNWKLVATRPAE 233


>gi|307294078|ref|ZP_07573922.1| import inner membrane translocase subunit Tim44 [Sphingobium
           chlorophenolicum L-1]
 gi|306880229|gb|EFN11446.1| import inner membrane translocase subunit Tim44 [Sphingobium
           chlorophenolicum L-1]
          Length = 218

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 111/222 (50%), Gaps = 5/222 (2%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            ++I++ A I  F+ L+L  VLGK+TG+E+  +   + +       +   +T   G   D
Sbjct: 1   MYVIVILAMIAGFLALRLYSVLGKRTGHEQEPALRPAEERAKVTIVQPRPVTEMAG---D 57

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
           ++   + L   G      +R +++   +FD   F+  A+++Y  ++++F+ G    +E L
Sbjct: 58  SVRLADGLIAPGGE--AGVRALIAADRNFDVPQFVEGAKSAYRMVLEAFWRGDRQELEWL 115

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
            D+ V   F D+++ R++    + + LV I+ ++I++A +      I++R      + + 
Sbjct: 116 CDADVLASFQDAITAREAEGHVLDNRLVRIEKVQIVDAGVTGRMAEISLRFEADIAAVTR 175

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           D+D  +++          DIWTF R++  ++PNW L  T   
Sbjct: 176 DRDGNVVAGSLTDAVGTNDIWTFTRDLRSTDPNWKLSETDEA 217


>gi|89052682|ref|YP_508133.1| import inner membrane translocase, subunit Tim44 [Jannaschia sp.
           CCS1]
 gi|88862231|gb|ABD53108.1| import inner membrane translocase subunit Tim44 [Jannaschia sp.
           CCS1]
          Length = 235

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 10/215 (4%)

Query: 17  AFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINE 76
           A I  F+ L+LR VLG + G EKP     S +        R    +  G   D L    +
Sbjct: 28  AGIAIFLILRLRSVLGTRDGFEKPPVAPGSSRRDV----RRDFEVIEGGPDDDIL----D 79

Query: 77  LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136
               G+   K +  +      F   +FL  AR +YE I+ +F  G V  +   +   V +
Sbjct: 80  HVDDGSDSAKALAAMKMAEPGFRVGEFLGGARQAYEMILMAFERGDVDGLRPFLADDVLE 139

Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYDKDNL 194
            F   +  R     ++++  VG+ ++ +  A+ +       +T+R +G+  S   + D  
Sbjct: 140 TFETVIDQRNEQGLSIEAEFVGVREITLQEATFDRSAGVGEVTVRFIGELTSVVRNADGE 199

Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           +I  D     +  D+WTF R +   +PNW L++T 
Sbjct: 200 IIEGDATEIKRQRDVWTFARKMGADDPNWALVATD 234


>gi|87198608|ref|YP_495865.1| import inner membrane translocase, subunit Tim44 [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134289|gb|ABD25031.1| import inner membrane translocase, subunit Tim44 [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 247

 Score =  228 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 104/229 (45%), Gaps = 7/229 (3%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKK-TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
              I++ A I  F+ L+L  VLG++   +E+P           +K  + G +   +  + 
Sbjct: 19  IVQIVILAMIAAFLGLRLYSVLGRRPERDEEPMRRRIEQPDPSAKPHQPGSMGNARSAET 78

Query: 69  DNLDS------INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
             L          E           +R I++    FD   FL  A+ +Y  I+++F+ G 
Sbjct: 79  GALAPRPRELAAPEAQTFDNSAEAGVRAIIAADRRFDVAQFLAGAKGAYGMILEAFWRGD 138

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
              + +L D+ VY+ F  ++  R +  + + + L+ I++ +II ASIE  T  I +R + 
Sbjct: 139 KEELAQLCDADVYEGFASAIDARANAGETIDARLIRIEEARIIGASIEGTTARIAVRFLA 198

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
              S + + +  +++   +      D+WTF R++   +P+W+L  T   
Sbjct: 199 DIASVTRNAEGHVVAGSLDDAIDARDLWTFRRDLTSRDPDWLLDETDEA 247


>gi|148259158|ref|YP_001233285.1| import inner membrane translocase, subunit Tim44 [Acidiphilium
           cryptum JF-5]
 gi|326402311|ref|YP_004282392.1| putative transporter [Acidiphilium multivorum AIU301]
 gi|146400839|gb|ABQ29366.1| import inner membrane translocase, subunit Tim44 [Acidiphilium
           cryptum JF-5]
 gi|325049172|dbj|BAJ79510.1| putative transporter [Acidiphilium multivorum AIU301]
          Length = 221

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 6/221 (2%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
             I+L A +  F+ L+LR VLG++TG E+P     +      +    G +  G  +   +
Sbjct: 7   VDIVLLALVAGFLVLRLRSVLGRRTGYERPPMPEPTAAGGMQRP--GGPVIEGVAEPPRS 64

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
              +       T + + +  I      FDP  FL+ A  S+  IV +F  G + A+  L+
Sbjct: 65  TRPVPAPH---TVVGQTLARIAQAERGFDPARFLDGAEASFRRIVLAFAAGDLAALRPLL 121

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              V+  F  +++ R    +   + +V I +  I  A +      I +R V    + + D
Sbjct: 122 TPGVFATFEQAVAQRAEAGETQHTEIVRIVEATIDEAELLGGEAVIVVRFVSDQQNYTRD 181

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           +   +I+   E   +++D+W+F +++  ++P W L + + G
Sbjct: 182 RQGQVIAG-TEAMTEIVDLWSFEKSLGAADPTWRLAAARSG 221


>gi|296444992|ref|ZP_06886953.1| import inner membrane translocase subunit Tim44 [Methylosinus
           trichosporium OB3b]
 gi|296257413|gb|EFH04479.1| import inner membrane translocase subunit Tim44 [Methylosinus
           trichosporium OB3b]
          Length = 229

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 107/228 (46%), Gaps = 9/228 (3%)

Query: 7   DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK-- 64
           ++ D  IL+ A +  FV  +L  VLG +T  E       +   V S     G++      
Sbjct: 5   EAFDPSILVLAALAAFVVWKLWSVLGVRTDRE-----NSAAGRVPSPGRRFGVVPPPAST 59

Query: 65  --GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
                  +    + L   G++    +  + +    FD K+FL  A+ +YE +V+SF +G 
Sbjct: 60  GFAAPPQDQSRWDGLAEPGSKGWAGLDALAAADRGFDAKNFLEGAKKAYELVVESFAKGD 119

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
              +  L+ + VY  F  +++ R+   ++ ++ +V I+   + +A +E     + IR V 
Sbjct: 120 REMLRNLLANDVYDSFAKAIAAREQRGESAEARVVAIETASVEDAQVERGRAQVAIRFVV 179

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           + ISA  D    +I  D E    + D+WTF R+I   +PNW L++T+ 
Sbjct: 180 KLISARRDSAGEVIEGDVERPIDITDLWTFARDISSRDPNWKLVATET 227


>gi|85374926|ref|YP_458988.1| hypothetical protein ELI_10495 [Erythrobacter litoralis HTCC2594]
 gi|84788009|gb|ABC64191.1| hypothetical protein ELI_10495 [Erythrobacter litoralis HTCC2594]
          Length = 215

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 105/223 (47%), Gaps = 10/223 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPF-SGFFSGKYVFSKRDERGIITLGKGKKK 68
            F I++ A I  F+ ++L  VLG++   E+      +       +   +    + + +  
Sbjct: 2   IFEIVILAMIAAFLGMRLYSVLGQRAEQEEEVIPNRYDAGDQPQQAAPKPATQVVELQPN 61

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
            NL            + + +R I +    FD   FL  A+ +Y  +++++++G    + +
Sbjct: 62  PNLHP---------SVEQGVRAIAAADRGFDVSSFLEGAKGAYGMVLEAYWKGDKETLRE 112

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
           L D  VY  F  ++  R+   + + ++L+ I+D  I +A ++  T  +T+R V    + +
Sbjct: 113 LCDDDVYASFAGAIDAREEAGEALDNTLIRIEDAVIRDAEMDGRTARVTVRFVADIAAVT 172

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
            DKD  +I+   +   +  DIWTF RN+  + P+WVL  T  G
Sbjct: 173 RDKDGNVIAGSLDDAIESRDIWTFSRNVDAAGPDWVLDETDEG 215


>gi|46204686|ref|ZP_00049618.2| COG4395: Uncharacterized protein conserved in bacteria
           [Magnetospirillum magnetotacticum MS-1]
          Length = 223

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 10/222 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSG---KYVFSKRDERGIITL 62
            DS D   L+F  +  FV  +LR VLG+KTG E+           +    + +   ++ L
Sbjct: 2   QDSFDVTTLIFLALAVFVIWRLRSVLGQKTGAERSPFRPVERNRTEPPAGRAEGDNVVRL 61

Query: 63  GKGKKKDNL-------DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115
               +                +   G+ + + +  +V V   FDP+ FL  A+ +YE IV
Sbjct: 62  PGADRAQAAAAVQTVTRDWRGIAEPGSAVARGLEQVVQVEPGFDPRTFLEGAKGAYEIIV 121

Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY 175
            +F +G    +  L+   VY  F+  +S R+   + V+++ + ID  +I+   ++     
Sbjct: 122 TAFAQGDRKTLRPLLSREVYDGFDRVISERERRRETVETTFISIDKAEIVAIEVKNRAAQ 181

Query: 176 ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217
           IT+R +   I+A+ D D  +I  + E   +V D+WTF R + 
Sbjct: 182 ITVRFLSNLITATRDADGKVIDGNAETGVEVPDVWTFARTLG 223


>gi|310817171|ref|YP_003965135.1| transporter, Tim44 family protein [Ketogulonicigenium vulgare Y25]
 gi|308755906|gb|ADO43835.1| transporter, Tim44 family protein [Ketogulonicigenium vulgare Y25]
          Length = 219

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 10/205 (4%)

Query: 26  QLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLN 85
           +LR VLG + G EKP +           R    +  +  G  +D +D +    P G+   
Sbjct: 21  RLRSVLGSRDGFEKPIAQV----PPEEARKRPTLDVIEGGPDRDIVDHV----PEGSATA 72

Query: 86  KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145
            ++  +      F   +FL+ +R +YE I+ +F  G +  +   +   V+  F   ++ R
Sbjct: 73  LIIGQMKKAEPSFSLSEFLSGSRGAYEMILMAFERGDIEPVRGFIAPEVFDAFAGVIADR 132

Query: 146 KSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQFISASYDKDNLLISSDPEIF 203
           ++    V++  +GI D+ + +A+ +       + +R V +  S   D D  ++   P++ 
Sbjct: 133 QARGLKVEAHFIGIRDVGLDDAAFDPATGEAELVVRFVAEMTSVVRDADGTVVEGAPDVA 192

Query: 204 GKVIDIWTFVRNIPPSNPNWVLIST 228
            +  D+WTF R +  S+PNW L++T
Sbjct: 193 KRQKDVWTFARKMGASDPNWTLVAT 217


>gi|114328998|ref|YP_746155.1| transporter [Granulibacter bethesdensis CGDNIH1]
 gi|114317172|gb|ABI63232.1| transporter [Granulibacter bethesdensis CGDNIH1]
          Length = 231

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 99/222 (44%), Gaps = 5/222 (2%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
             ++L   I  F+ L+LR VLG++ G E+P      G+         G+    +      
Sbjct: 14  VDLVLLGMIAVFLVLRLRSVLGRRVGFERPEVPANQGQT---GNRIPGLPVRLRRPDAAV 70

Query: 71  LDSINELFP-IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
            ++   + P   +   +V+  +  V   FD   FLN A  ++  IV ++ +G+  A+  L
Sbjct: 71  AEARTYVLPDASSPTGQVLARMKEVDRSFDAVRFLNNAEQAFRVIVTAYAQGEREALRPL 130

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           +    +  F  ++  R+ +    ++ +  I D++I NA +E+    +TIR V    +   
Sbjct: 131 LTEATFTIFCQAIDAREQDGARQQTEIQSIRDIRIENARLEQTQAALTIRFVSDQHNVML 190

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           ++    +    E   +++D+WTF R++   +P W L  T   
Sbjct: 191 NRTGEPVEG-VEGLTEIVDVWTFERDLASRDPTWRLSGTDNA 231


>gi|148556731|ref|YP_001264313.1| import inner membrane translocase subunit Tim44 [Sphingomonas
           wittichii RW1]
 gi|148501921|gb|ABQ70175.1| import inner membrane translocase, subunit Tim44 [Sphingomonas
           wittichii RW1]
          Length = 226

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 11/229 (4%)

Query: 5   KMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK 64
           ++      I++ A +  FV  +L  VLG++TG+E+          +    +         
Sbjct: 6   RIGGPVTTIVILAMVFLFVAFRLWSVLGRRTGHEQ---------TIARPAEAAPAPIGAG 56

Query: 65  GKKKDNLDSINELFP--IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
               +N   +    P  +  R    +R I S    FD   FL  AR++Y  I+++++ G 
Sbjct: 57  RSLPENATPVLPAKPAVVEPRAEAGVRAIQSADGGFDAAQFLEGARSAYRMILEAYWRGD 116

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
             A+ +L D  VY+ F  +++ R+   + + + LV I+   I  A +   T  +T+R   
Sbjct: 117 EEALRRLTDDDVYEAFAAAITERREANEVLDNRLVSIESAVIEQARMNGQTANVTVRFDA 176

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
              + + D +  +++          D+WTF R++   +PNW L+ T   
Sbjct: 177 DIAAVTRDGEGNVVAGSLTDAVPTHDVWTFSRHVRSDDPNWTLVETDEA 225


>gi|300024770|ref|YP_003757381.1| import inner membrane translocase subunit Tim44 [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526591|gb|ADJ25060.1| import inner membrane translocase subunit Tim44 [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 251

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 112/246 (45%), Gaps = 23/246 (9%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTG-NEKPFSGFFSGKYVFSKR-----DERGIITL 62
            D + L+   +     ++LR VLG +T  +E+      + +   S+R         +IT+
Sbjct: 5   FDLITLIALIVAVAAIIKLRSVLGHRTDEDEQRVERLRAREREASQRAGADAPSADVITM 64

Query: 63  GKGKKKDNL-------------DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN 109
            +  +                   IN        +   +  +  +  +FDP+ F+  A  
Sbjct: 65  PRRDRDAAPAAPAAEAAGPSAETRINAYPVSNPDVTAGLLQVAKLDPEFDPESFVTGAGR 124

Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
           +YE IV +F EG    ++ L+   V+  F+ +++ R++  + +    VGI    I++A +
Sbjct: 125 AYEMIVSAFAEGNRRMLKDLLSKDVFDGFSSAIADREARGEVLDQQFVGIKKADIVDAEV 184

Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP----SNPNWVL 225
           +  T  +T+R + + ISA+ DK   +I+ D +    V DIW F R++      SNPNW L
Sbjct: 185 KNGTAALTVRFISELISATRDKAGEVIAGDAQKIKDVTDIWIFSRDVSSAKALSNPNWRL 244

Query: 226 ISTKLG 231
           ++T+  
Sbjct: 245 VATQAP 250


>gi|294010816|ref|YP_003544276.1| hypothetical protein SJA_C1-08300 [Sphingobium japonicum UT26S]
 gi|292674146|dbj|BAI95664.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
          Length = 218

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 108/222 (48%), Gaps = 5/222 (2%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            ++I++ A I  F+ L+L  VLGK+TG+E+  +   + +       +   +    G   D
Sbjct: 1   MYVIVILAMIAGFLALRLYSVLGKRTGHEQEPALRPAEERAKVTIVQPRPVPEMAG---D 57

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
           ++     L   G      +R +++    FD   F+  A+ +Y+ ++++F+ G    +E L
Sbjct: 58  SVRLSEGLIAPGGE--AGVRALIAADRSFDVPQFVEGAKAAYKMVLEAFWRGDRQELEWL 115

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
            D+ V   F ++++ R++    + + LV I+ ++I++A +      I++R      + + 
Sbjct: 116 CDADVLASFEEAIAAREAEGHVLDNRLVRIEKVQIVDAGVTGRMAEISLRFEADIAAVTR 175

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           D+D  +++          DIWTF R++  ++PNW L  T   
Sbjct: 176 DRDGNVVAGSLTDAVGTNDIWTFTRDLRSTDPNWKLSETDEA 217


>gi|83944953|ref|ZP_00957319.1| hypothetical protein OA2633_09999 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851735|gb|EAP89590.1| hypothetical protein OA2633_09999 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 219

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 5/222 (2%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              IL FA +  F+ ++L  VLGK +G           +    +R E   +       + 
Sbjct: 3   ILQILFFAGLAVFLGVRLYMVLGKSSGR-----AAEDVEREQRERAEAAGMGAPPPSMRP 57

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
             D             + +  I      FDP +F   AR +YE IV ++ +G   A+E L
Sbjct: 58  QADETPFAAQFAGPAGEGLMQIAQHDPAFDPDEFRKGARAAYEMIVLAYAKGDREALEPL 117

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           +  RV + ++ +++ R+     V + +  I   +I  AS+ +N   + I    +  S + 
Sbjct: 118 LTERVKKAYDQAIAAREEKNWTVTTEIDRIKSAEISEASLNDNRAKVKIAFSVELASETR 177

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           +    ++  D      V +IW+F R++   NPNW L   K  
Sbjct: 178 NAQGDVVEGDLTTLKTVDEIWSFERDVTSENPNWRLSGVKPA 219


>gi|326386373|ref|ZP_08207996.1| import inner membrane translocase, subunit Tim44 [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209034|gb|EGD59828.1| import inner membrane translocase, subunit Tim44 [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 218

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 95/218 (43%), Gaps = 2/218 (0%)

Query: 16  FAFITFFVFLQLRGVLGKK-TGNEKPFSGFFSGKYVFSK-RDERGIITLGKGKKKDNLDS 73
            A I  F+ L+L  VLG++  G+++P           +  R     +             
Sbjct: 1   MAMIALFLGLRLYAVLGRRAEGSDEPLRRRVEQPDPQAALRAMPSKLPEKPAMTGRPSLP 60

Query: 74  INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
             E           +R I++    FD   FL  A+ +Y  ++D+F+ G   A+ +L +  
Sbjct: 61  TAEPSAFDAGAETGIRAIIAADRRFDVALFLTGAKAAYGMVLDAFWRGDKDALAQLCERS 120

Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
           VY+ F  ++  RK   + V + L+ +DD +I++A        I +R V    + + + + 
Sbjct: 121 VYESFAAAIDARKQAGETVDARLIRVDDARIVSADFNAPVARIAVRFVADVATVTRNTEG 180

Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
            +++   +   +  D+WTF R++   +P+W L  T  G
Sbjct: 181 TVVAGSLDDAIESRDLWTFSRDLTSRDPDWQLDETDQG 218


>gi|294085200|ref|YP_003551960.1| hypothetical protein SAR116_1633 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664775|gb|ADE39876.1| hypothetical protein SAR116_1633 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 212

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 103/224 (45%), Gaps = 16/224 (7%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
               I++FA I   + L+L+ VLG++TG E+P       K      ++  ++     K +
Sbjct: 2   PYIDIIIFAVIAVLLVLRLKSVLGQRTGFEQPQD-----KKPMQAANDGDVVPFPSNKDE 56

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
                       G      +  +     +F    FL  A  ++E ++ ++ EG +  +++
Sbjct: 57  -----------TGALNGHGIATLRKADRNFTEAAFLGGATQAFEMVLRAYAEGDLAQLKR 105

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
           L+   + Q F  S+  R +N++++   L  I +  I+N ++ ++   +T+         +
Sbjct: 106 LLGYDLLQSFTQSIQKRNANKESLTIDLENIKEASILNIAVVDSVAAVTVHFHSVQTRIA 165

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            D D  +I  D     +++DIWTF R++  ++PNW L+ T+  +
Sbjct: 166 RDADENIIDEDESQSQEIVDIWTFERDLTLNDPNWKLVETETAD 209


>gi|149185516|ref|ZP_01863832.1| hypothetical protein ED21_20864 [Erythrobacter sp. SD-21]
 gi|148830736|gb|EDL49171.1| hypothetical protein ED21_20864 [Erythrobacter sp. SD-21]
          Length = 218

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 7/223 (3%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEK-PFSGFFSGKYVFSKRDERGIITLGKGKKK 68
            + I++ A I  F+ L+L  VLG+++ +E+ P    F          ER      +  + 
Sbjct: 2   IYEIVILAAIAAFLGLRLYSVLGERSEHEEEPARHRFDAPDAVPPAAERPAAPARESVRL 61

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
            ++D+        +     +R I S    FD   FL  A+ +Y  I+++F++G    +  
Sbjct: 62  RSVDN------ASSANENAIRAIASADPRFDLLAFLEGAKAAYGMILEAFWKGDKDTLRD 115

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
           L D  VY  F+ ++  R +  +++++ LV I+D  I +A ++  T  I++  V    S +
Sbjct: 116 LTDDDVYAGFSGAIDARDTAGESLENRLVRIEDATIHSAELDNRTARISVLFVSDIASLT 175

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
            DKD  +I+   +   +  DIWTF RN+   +PNWVL  T  G
Sbjct: 176 RDKDGNVIAGSLDDAVESRDIWTFTRNVDAMDPNWVLDETDQG 218


>gi|222474811|ref|YP_002563226.1| hypothetical protein AMF_080 [Anaplasma marginale str. Florida]
 gi|255002781|ref|ZP_05277745.1| hypothetical protein AmarPR_00408 [Anaplasma marginale str. Puerto
           Rico]
 gi|222418947|gb|ACM48970.1| Conserved hypothetical protein [Anaplasma marginale str. Florida]
          Length = 219

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 91/222 (40%), Gaps = 4/222 (1%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
           G   + ++AF+  F+F +L G LGK +      S  +  +    +    G I      + 
Sbjct: 2   GMVELAIYAFVAAFIFFRLYGSLGKASSVNFQPSAIYPEQAGGEQAASDGSIN----SQD 57

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
             + S+        +++ V   I      F  K F+  +  ++EAIV +  +G    +  
Sbjct: 58  IPVSSVVADCASVEQISSVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGNAEFLSS 117

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
           L+   ++  F   +  RKS     +  +V I   K+ +A ++ N+  IT++ V + I+  
Sbjct: 118 LLSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVTEQINVV 177

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            D    ++         + D W F R+I  S   W L ST  
Sbjct: 178 RDAGGQVVDGSTSKVNTIEDTWKFARDITTSGRRWYLTSTSA 219


>gi|254994672|ref|ZP_05276862.1| hypothetical protein AmarM_00445 [Anaplasma marginale str.
           Mississippi]
          Length = 217

 Score =  205 bits (521), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              + ++AF+  F+F +L G LGK +      S  +  +    +    G I      +  
Sbjct: 1   MVELAIYAFVAAFIFFRLYGSLGKASSVNFQPSAIYPEQAGGEQAASDGSIN----SQDI 56

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
            + S+        ++  V   I      F  K F+  +  ++EAIV +  +G    +  L
Sbjct: 57  PVSSVVADCASVEQIASVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGNAEFLSSL 116

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           +   ++  F   +  RKS     +  +V I   K+ +A ++ N+  IT++ V + I+   
Sbjct: 117 LSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVTEQINVVR 176

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D    ++         + D W F R+I  S   W L ST  
Sbjct: 177 DAGGQVVDGSTSKVNTIEDTWKFERDITTSGRRWYLTSTSA 217


>gi|73667391|ref|YP_303407.1| membrane translocase, subunit Tim44 [Ehrlichia canis str. Jake]
 gi|72394532|gb|AAZ68809.1| membrane translocase, subunit Tim44 [Ehrlichia canis str. Jake]
          Length = 212

 Score =  205 bits (521), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 102/225 (45%), Gaps = 18/225 (8%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              + ++A +  F+F +L   LGK +G                  +    I++     ++
Sbjct: 1   MVELAIYALLAAFIFFRLYNSLGKTSG--------------LQPNNHSQAISIVVEDTQE 46

Query: 70  NLDSINELFPIGTRLNK----VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
             D+  E+  +    NK    ++  I     +F  K F++ +  ++E I+ +F EG VH 
Sbjct: 47  YDDAEIEIESVMDTCNKDEKSIINQIKKKDKEFSLKHFMDGSIKAFEIIIKAFNEGNVHI 106

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           +  L+D+ +Y  F++ +  RK      +  +V +   KII   +  N  YIT++ + + I
Sbjct: 107 LSMLLDTNLYNSFSEEIENRKKLNHVYEDIIVSVTSHKIIKLDLSGNIAYITVKFITEQI 166

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           +   DKD+ +I        K+ D+WTF ++I  SN  W L + + 
Sbjct: 167 NFVKDKDDNVIQGSTSKINKIEDVWTFRKDITLSNKKWYLNAIQS 211


>gi|56416441|ref|YP_153515.1| hypothetical protein AM113 [Anaplasma marginale str. St. Maries]
 gi|56387673|gb|AAV86260.1| hypothetical protein AM113 [Anaplasma marginale str. St. Maries]
          Length = 217

 Score =  204 bits (520), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              + ++AF+  F+F +L G LGK +      S  +  +    +    G I      +  
Sbjct: 1   MVELAIYAFVAAFIFFRLYGSLGKASSVNFQPSAIYPEQAGGEQAASDGSIN----SQDI 56

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
            + S+        +++ V   I      F  K F+  +  ++EAIV +  +G    +  L
Sbjct: 57  PVSSVVADCASVEQISSVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGNAEFLSSL 116

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           +   ++  F   +  RKS     +  +V I   K+ +A ++ N+  IT++ V + I+   
Sbjct: 117 LSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVTEQINVVR 176

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D    ++         + D W F R+I  S   W L ST  
Sbjct: 177 DAGGQVVDGSTSKVNTIEDTWKFERDITTSGRRWYLTSTSA 217


>gi|255003915|ref|ZP_05278716.1| hypothetical protein AmarV_00428 [Anaplasma marginale str.
           Virginia]
          Length = 217

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              + ++AF+  F+F +L G LGK +      S  +  +    +    G I      +  
Sbjct: 1   MVELAIYAFVAAFIFFRLYGSLGKASSVNFQPSAIYPEQAGGEQAASDGSIN----SQDI 56

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
            + S+        +++ V   I      F  K F+  +  ++EAIV +  +G    +  L
Sbjct: 57  PVSSVVADCASVEQISSVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGNAEFLSSL 116

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           +   ++  F   +  RKS     +  +V I   K+ +A ++ N+  IT++ V + I+   
Sbjct: 117 LSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVTEQINVVR 176

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D    ++         + D W F R+I  S   W L ST  
Sbjct: 177 DAGGQVVDGSTSKVNTIEDTWKFARDITTSGRRWYLTSTSA 217


>gi|42520013|ref|NP_965928.1| hypothetical protein WD0107 [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42409750|gb|AAS13862.1| conserved domain protein [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 216

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 101/221 (45%), Gaps = 18/221 (8%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
              ++++A +  F+F +L   LG+    N K  +         S+  E  +  +      
Sbjct: 1   MIELVIYALLAAFIFSRLYNSLGRSANLNLKKLTNVLD----VSRSREDVVENIEGYIDS 56

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
           ++ +SI   +          + I+    DF    F+  +  ++E I+  F +G +  ++ 
Sbjct: 57  NDENSIKVTY----------KQILKKNKDFSISHFIEGSSIAFELIIKCFNQGNLSQLKP 106

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
           L+D  +Y +F + +  RK   +  +S +V I   KI+   + +N V+I +  + + I+  
Sbjct: 107 LLDKDLYDNFAEKIKHRK---EVHESIIVSIVSQKILEIKLVKNAVFIAVYFLSEQINFV 163

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            + +  +IS       KV D+W F +N+  S+P+W+L+S  
Sbjct: 164 KNNEGDIISGSTSTINKVEDVWQFKKNVNSSDPSWLLVSIH 204


>gi|58696732|ref|ZP_00372276.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58698125|ref|ZP_00373048.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225629991|ref|YP_002726782.1| hypothetical protein WRi_001450 [Wolbachia sp. wRi]
 gi|58535371|gb|EAL59447.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58537084|gb|EAL60206.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225591972|gb|ACN94991.1| hypothetical protein WRi_001450 [Wolbachia sp. wRi]
          Length = 216

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 100/221 (45%), Gaps = 18/221 (8%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
              ++++A +  F+F +L   LG+    N K  +         S+  E  +  +      
Sbjct: 1   MIELVIYALLAAFIFSRLYNSLGRSANLNLKKLTSVLD----VSRSREDVVENIEGYIDS 56

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
           ++ +SI   +            I+    DF    F+  +  ++E I+  F +G +  ++ 
Sbjct: 57  NDENSIKVTYE----------QILKKNKDFSISHFIEGSSIAFELIIKYFNQGNLSQLKP 106

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
           L+D  +Y +F + +  RK   +  +S +V I   KI+   + +N V+I +  + + I+  
Sbjct: 107 LLDKDLYDNFAEKIKHRK---EVHESIIVSIVSQKILEIKLVKNVVFIAVYFLSEQINFV 163

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            + +  +IS       KV D+W F +N+  S+P+W+L+S  
Sbjct: 164 KNNEGDIISGSTSTINKVEDVWQFKKNVNSSDPSWLLVSIH 204


>gi|197103473|ref|YP_002128850.1| hypothetical protein PHZ_c0007 [Phenylobacterium zucineum HLK1]
 gi|196476893|gb|ACG76421.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 205

 Score =  200 bits (510), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
             +++FA +   V  QL  VLG++ G                ++ E              
Sbjct: 4   LELIIFAGLAAIVLYQLYSVLGRRVG----------------RQPEDQAAAEPAQGSVRA 47

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           +D + E    G  L   +  + ++   FD   FL  A+ +YE IV +F +G    ++ L+
Sbjct: 48  VDRMAEPADDGVAL-TGLAAVKALDPSFDVGHFLGGAKQAYEMIVRAFADGDRATLKNLL 106

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE-NTVYITIRIVGQFISASY 189
             +V   F  ++  R++  +             +  A +   +   +T+R + +F S + 
Sbjct: 107 APQVLASFEAAIDQREAEGRTESVEFFHPPRADLEKADVTGADLGRVTVRFLAEFRSRTK 166

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
             +   +        +  ++WTF RN+   +PNW+L+     E
Sbjct: 167 GPEGEAVDD-----RRTAELWTFERNLKSRDPNWMLVHVDAAE 204


>gi|269959143|ref|YP_003328932.1| Tim44-like domain containing protein [Anaplasma centrale str.
           Israel]
 gi|269848974|gb|ACZ49618.1| Tim44-like domain containing protein [Anaplasma centrale str.
           Israel]
          Length = 217

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              + ++AF+  F+F +L G LGK +      S  + G+    +    G +      +  
Sbjct: 1   MVELAIYAFVAAFIFFRLYGSLGKASSVNFQPSAIYPGQVSGEQAASDGSV----KPQDI 56

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
            +DS+        +++ V   I +   DF  K F+  +  ++EAIV +  +G    +  L
Sbjct: 57  PVDSVVADSAPVDQISSVFEAIKARNKDFSVKHFIEGSAAAFEAIVSALNQGNTELLSSL 116

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           ++  +Y  F   +  R+   +  +  +V I   K+ NA +E N   IT++ V + I+   
Sbjct: 117 LNRHMYNSFVKEVERRRDAGRVHEDVVVSITSQKVTNAELEGNFATITVQFVTEQINVVR 176

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D +  ++         + D W F R++  +   W L ST  
Sbjct: 177 DVEGQVVDGSTSKVNVIEDTWKFERDVTAAGRRWYLASTSA 217


>gi|4098584|gb|AAD00329.1| unknown [Rhodobacter capsulatus]
          Length = 183

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 85/182 (46%), Gaps = 6/182 (3%)

Query: 49  YVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR 108
                R       +  G   D +D +    P G+     +  +  V   F+   FL  ++
Sbjct: 4   EAPGPRAADRFEVIEGGPDHDIIDHV----PEGSDAAVALAQMKRVEPTFNVGAFLQGSK 59

Query: 109 NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS 168
            +YE I+ +F  G + A+ + +   V + F  +++ R+     V++S +G+ ++ +  AS
Sbjct: 60  VAYEMILMAFERGDLSAVRRFLAPEVLEAFETAVADRQRQGLTVEASFLGLRELVLTEAS 119

Query: 169 IEE--NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226
             E      +T+R  G+ IS + D +  ++  DP+   K  D WTF R +  S+PNW L+
Sbjct: 120 FNESSREAEVTVRFGGELISVARDANGQIVEGDPKAPRKQRDSWTFARVMGSSDPNWQLV 179

Query: 227 ST 228
           +T
Sbjct: 180 AT 181


>gi|225677153|ref|ZP_03788152.1| hypothetical protein WUni_006480 [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590820|gb|EEH12048.1| hypothetical protein WUni_006480 [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 216

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 100/221 (45%), Gaps = 18/221 (8%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
              ++++A +  F+F +L   LG+    N K  +         S+  E  +  +      
Sbjct: 1   MIELVIYALLAAFIFSRLYNSLGRSANLNLKKLTNVLD----VSRSREDVVENIEGYIDS 56

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
           ++ +SI   +          + I+    DF    F+  +  ++E I+  F +G +  ++ 
Sbjct: 57  NDENSIKVTY----------KQILKKNKDFSISHFIEGSSIAFELIIKCFNQGNLSQLKP 106

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
           L+D  +Y +F + +  RK   +  +S +V I   KI+   + +N V+I +  + + I+  
Sbjct: 107 LLDKDLYDNFAEKIKHRK---EVHESIIVSIVSQKILEIKLVKNAVFIAVYFLSEQINFV 163

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            +    +IS       KV D+W F +N+  S+P+W+L+S  
Sbjct: 164 KNNKGDIISGSTSTINKVEDVWQFKKNVNSSDPSWLLVSIH 204


>gi|68171233|ref|ZP_00544637.1| Mitochondrial import inner membrane translocase, subunit Tim44
           [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658281|ref|YP_507053.1| tim44-like domain-containing protein [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67999353|gb|EAM85998.1| Mitochondrial import inner membrane translocase, subunit Tim44
           [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599738|gb|ABD45207.1| tim44-like domain protein [Ehrlichia chaffeensis str. Arkansas]
          Length = 212

 Score =  198 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 104/223 (46%), Gaps = 14/223 (6%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              + ++AF+  F+F +L   LGK +G +             +   +   I +   ++ D
Sbjct: 1   MVELAIYAFLAAFIFFRLYHSLGKTSGLQ------------SNSHSQTISIIMEDTQEHD 48

Query: 70  NLD-SINELFPIGTRLNK-VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
             D  I+ +  I    +K ++  I     +F  + F++ +  ++E I+ +F EG +H + 
Sbjct: 49  TADIDIDSVMEICNENDKSIINHIKKKDKEFSLRHFMDGSIKAFEIIIKAFNEGNIHILS 108

Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
            L+D+ +Y  F + +  RK+  +  +  +V I   KI   S+  N  YIT++ + + I+ 
Sbjct: 109 MLLDTNLYNSFVEEIENRKALGQLYEDIIVSITSHKITKLSLSGNIAYITVKFISEQINF 168

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             DKD+ ++        K+ D WTF ++   SN  W L + + 
Sbjct: 169 VKDKDDNILQGSTSKINKIEDTWTFRKDTTLSNKKWYLSTIQS 211


>gi|329114333|ref|ZP_08243095.1| Import Inner Membrane Translocase Subunit [Acetobacter pomorum
           DM001]
 gi|326696409|gb|EGE48088.1| Import Inner Membrane Translocase Subunit [Acetobacter pomorum
           DM001]
          Length = 242

 Score =  197 bits (502), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 102/225 (45%), Gaps = 12/225 (5%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
             ++L A +  F+ L+LR VLGK+ G  +P       +   + R     +  GK ++ + 
Sbjct: 26  VDLVLLALVAAFLVLRLRSVLGKRVGI-QPVQVQLQVRPDAAPR-----VVEGKPEQAEA 79

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
               +   P GTR+  ++ DI      F P+ FLN A+ ++  +V ++ +G ++ ++  +
Sbjct: 80  AAEFDIPAP-GTRVGTLLADIRQKDPSFTPQQFLNGAQTAFAQVVGAYAQGNLNVLKTYL 138

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE----ENTVYITIRIVGQFIS 186
              V+  F   ++ R + E+  ++ +  I  + I +  +          I +RIV   IS
Sbjct: 139 TPAVFSAFEAGITARTNAEETQRTDVKAIRSLAIEDVRLTPMEAGTAAAIDVRIVSDQIS 198

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
              +K+   ++   +   +  D+WTF R +  +   W L + +  
Sbjct: 199 LVLNKEGQPVTG-TDAVTEFSDLWTFERLLDVNGSTWRLAAARSA 242


>gi|58617502|ref|YP_196701.1| hypothetical protein ERGA_CDS_07750 [Ehrlichia ruminantium str.
           Gardel]
 gi|58417114|emb|CAI28227.1| Hypothetical protein ERGA_CDS_07750 [Ehrlichia ruminantium str.
           Gardel]
          Length = 213

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 96/222 (43%), Gaps = 11/222 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              + ++AF+  F+F +L   LG+ +G +   +       +  + D              
Sbjct: 1   MVELAIYAFVAAFIFFRLYNSLGRTSGLQ--PNNHSQPVSILIQEDNNH--------DYT 50

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
           ++D  + +         +M  I     +F  K F++ +  +++ I+ +F EG +  +  L
Sbjct: 51  DIDIESVMESCDDNDQSIMNTIKRKDREFSLKYFMDGSMKAFDIIIKAFNEGNIQILCSL 110

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           +D  +Y  F   +  RK+  +  +  +V I   KI    +  N  +IT++ + + I+   
Sbjct: 111 LDKDLYNSFLTEIEYRKNLGQVYEDVIVSIIYHKITKLKLSGNIAHITVKFISEQINFVK 170

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIP-PSNPNWVLISTKL 230
           D++  ++        K+ D+WTF +++   ++  W L S + 
Sbjct: 171 DQEGNILQGSTSKINKIEDVWTFKKDMSLLTSKKWYLSSIQP 212


>gi|88607695|ref|YP_504724.1| Tim44-like domain-containing protein [Anaplasma phagocytophilum HZ]
 gi|88598758|gb|ABD44228.1| Tim44-like domain protein [Anaplasma phagocytophilum HZ]
          Length = 241

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 89/221 (40%), Gaps = 7/221 (3%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
           G   + ++AF+  F+F +L   LG+ +      S  F G     ++     I L     +
Sbjct: 26  GMVELAIYAFVAAFIFFRLYSSLGRAS------SINFQGACATPEKPGDDRIALDAKNDQ 79

Query: 69  DNLDSINELFPIG-TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
            ++   +         ++  +  + +   DF  ++F+  +  ++E I+ +   G    + 
Sbjct: 80  QDIPLTSVTEEEHFEEVSPGIEVMRARSMDFSLRNFMAGSAAAFEVIMKALNRGDTELLS 139

Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
            L+   +Y+ F   +  R S     +  +V I   KI  A +  +   IT++ + + I+ 
Sbjct: 140 SLLSDDIYKSFEKEIMRRNSEGHIHEDVVVSIVSQKITAAKVIGDVAAITVKFLTEQINV 199

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             +    +I+        V D WTF +N    +  W L +T
Sbjct: 200 VRNAAGDVIAGSTSKINVVEDFWTFEKNANSPSRKWYLSAT 240


>gi|254455846|ref|ZP_05069275.1| import inner membrane translocase, subunit Tim44 [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207082848|gb|EDZ60274.1| import inner membrane translocase, subunit Tim44 [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 198

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 97/223 (43%), Gaps = 39/223 (17%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
             I+L A I  F+FL+LRG+LGK+TG E                          GK    
Sbjct: 8   IDIILLAMIAGFIFLRLRGILGKRTGFE--------------------------GKAAPQ 41

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFD---PKDFLNEARNSYEAIVDSFFEGK--VHA 125
            D I +          V +        FD    K+F+  A+ +YE I+  F +    +  
Sbjct: 42  FDKILKEA--------VAKQAPVNNETFDENAQKEFIKGAKIAYETIITDFSDNDNKLTT 93

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
            + L++  +Y  FND+L  R       + + +GI+   I      +  + +T+  + + I
Sbjct: 94  SKPLLNKEIYDQFNDALKERSERGHYAEITFIGINSATIKEHKKIDKILNVTVDFIAEVI 153

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           +   DKD  +IS DPE   K+ D W F R++   NPNW L++T
Sbjct: 154 TCIKDKDKKIISGDPEKIKKIYDTWVFSRDVTSPNPNWQLVNT 196


>gi|304320483|ref|YP_003854126.1| hypothetical protein PB2503_04547 [Parvularcula bermudensis
           HTCC2503]
 gi|303299385|gb|ADM08984.1| hypothetical protein PB2503_04547 [Parvularcula bermudensis
           HTCC2503]
          Length = 222

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 111/222 (50%), Gaps = 7/222 (3%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
            D +++ F  I  F+  +L  +LG K G+E P         + + R ER     G+G ++
Sbjct: 2   NDPVLIFFVVIAAFLSYRLYTLLGSKGGHE-PTDAERERIGLPTGRPERD----GQGTQE 56

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
           D  +++         L      + + Y DFDP +F+  A+ +YE I+++F  G++  +  
Sbjct: 57  D--EAVVAPRSDAKPLPAWAETVRADYADFDPDEFVTGAKAAYEMIIEAFANGRLDDVRA 114

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
            VD  V + F  ++  R + ++ ++ +LVGI+  +++ A  +   + +T++     I  +
Sbjct: 115 YVDPDVMRTFEIAVRGRDNAQQTMEVTLVGIERAEVVEAKRQSAHLDVTVKFRSDQIRVT 174

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            + +  +I  DP     VID WTF R +  ++PNW L +T+ 
Sbjct: 175 RNAEGDVIEGDPNRIDLVIDRWTFSRPLSSTDPNWTLTATEA 216


>gi|58584799|ref|YP_198372.1| hypothetical protein Wbm0542 [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|58419115|gb|AAW71130.1| Uncharacterized conserved protein related to eukaryotic translocase
           of inner mitochondrial membrane [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 218

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 96/220 (43%), Gaps = 18/220 (8%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
              ++++A +  FVF +L   LG+ T  N K  +         S+  E  +  +      
Sbjct: 1   MIELVIYALLAAFVFSRLYNSLGRSTSLNLKKLTSVLD----ISQVREDVVENIEDYIDS 56

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
           ++ D I   +            I+    DF    F+  +   +E I+  F +G +  ++ 
Sbjct: 57  NDKDPIKATYE----------QILQKNKDFSISHFMEGSGVVFELIIKYFNQGNLSQLKP 106

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
           L+D  +Y +F   +  RK   +  +S +V I   KI+   + +N V+I +  + + I+  
Sbjct: 107 LLDKDLYNNFAGKIKQRK---EIYESIIVSIVSQKILEIKLVKNVVFIAVYFLSEQINFV 163

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            +    +IS       KV D+W F +N+  SNP+W+L S 
Sbjct: 164 KNDKGDVISGSTSTINKVEDVWQFKKNVTSSNPSWLLTSI 203


>gi|57239470|ref|YP_180606.1| hypothetical protein Erum7440 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579448|ref|YP_197660.1| hypothetical protein ERWE_CDS_07840 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161549|emb|CAH58476.1| conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58418074|emb|CAI27278.1| Hypothetical protein ERWE_CDS_07840 [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 213

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 95/222 (42%), Gaps = 11/222 (4%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              + ++AF+  F+F +L   LG+ +G +   +       +  + D              
Sbjct: 1   MVELAIYAFVAAFIFFRLYNSLGRTSGLQ--PNNHSQPVSILIQEDNNH--------DYT 50

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
           ++D  + +         +M  I     +F  K F++ +  +++ I+ +F EG    +  L
Sbjct: 51  DIDIESVMESCDDNDKSIMSTIKRKDREFSLKYFMDGSMKAFDIIIKAFNEGNTQILCSL 110

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           +D  +Y  F   +  RK+  +  +  +V I   KI    +  N  +IT++ + + I+   
Sbjct: 111 LDKDLYNSFLTEIEYRKNLGQVYEDVIVSIIHHKITKLKLSGNIAHITVKFISEQINFVK 170

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIP-PSNPNWVLISTKL 230
           D++  ++        K+ D+WTF +++   ++  W L S + 
Sbjct: 171 DQEGNILQGSTSKINKIEDVWTFKKDMSLLTSKKWYLSSIQP 212


>gi|258541896|ref|YP_003187329.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256632974|dbj|BAH98949.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256636031|dbj|BAI02000.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256639086|dbj|BAI05048.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256642140|dbj|BAI08095.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256645195|dbj|BAI11143.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256648250|dbj|BAI14191.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256651303|dbj|BAI17237.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654294|dbj|BAI20221.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 242

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 100/225 (44%), Gaps = 12/225 (5%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
             ++L A +  F+ L+LR VLGK+ G  +P       +   + R     +  GK ++ + 
Sbjct: 26  VDLVLLALVAAFLVLRLRSVLGKRVGI-QPVQVKLQVRPDAAPR-----VVEGKPEQAET 79

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
               +   P GTR+  ++ DI      F P+ FLN A+ ++  +V ++ +G V  ++  +
Sbjct: 80  AAEFDIPAP-GTRVGTLLADIRQKDPSFTPQQFLNGAQIAFAQVVGAYAQGNVDVLKTYL 138

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE----ENTVYITIRIVGQFIS 186
              V   F   ++ R + E+  ++ +  I  + I +  I          I +RIV   IS
Sbjct: 139 TPAVLAAFEAGITARANAEETQRTDVKAIRSLAIEDVRISPMEAGTAAAIDVRIVSDQIS 198

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
              +K+   ++   +   +  D+WTF R +  +   W L + +  
Sbjct: 199 LVLNKEGQPVTG-TDAVTEFSDLWTFERLLDVNGSTWRLAAARSA 242


>gi|114799709|ref|YP_758741.1| Tim44 domain-containing protein [Hyphomonas neptunium ATCC 15444]
 gi|114739883|gb|ABI78008.1| Tim44 domain protein [Hyphomonas neptunium ATCC 15444]
          Length = 204

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 23/226 (10%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M +    +L+ A +  FV  +L   LG + G+E P            KR   G +   + 
Sbjct: 1   MSNPLIEVLILAAVALFVLWRLYSALG-RGGDEGPVQRP---APTPEKRPTPGEMPAPQP 56

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
           ++ +N   I      G      + DI +    F  ++F+  A+ +Y+ IV ++  G  +A
Sbjct: 57  RRIENERPIFTGPAAG-----ALEDIYNADRSFSTEEFMRGAKAAYQLIVGAYARGDRNA 111

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           +  L+D  VY+ ++ +++ R +        L+ I   +I  A ++ +   + +R   +  
Sbjct: 112 LRPLLDDDVYEAWDAAIAERDATGARA-FELLRIKKAEIDRAELDGSMARVMVRYEAEL- 169

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
                        D E    V +IWTF+R++  S+PNW+L   ++ 
Sbjct: 170 ------------GDGETTRIVREIWTFMRDVSSSDPNWLLDDVEVA 203


>gi|71083043|ref|YP_265762.1| translocase [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062156|gb|AAZ21159.1| Putative translocase transmembrane protein with Tim44 Pfam domain
           [Candidatus Pelagibacter ubique HTCC1062]
          Length = 197

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 34/220 (15%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
             I+L A I  F+FL+LRG+LGKKTG E      F  ++            +      +N
Sbjct: 8   IDIILLAMIAGFIFLRLRGILGKKTGFEGKIPPQFEKEFQK--------TNITPKPVSEN 59

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK--VHAIEK 128
            D +                          K+FL  A+ +YE I+  F +    + A + 
Sbjct: 60  FDEV------------------------SQKEFLKGAKIAYETIITDFSDSDNKLIASKP 95

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
           L+  ++Y  F ++L  R +     + + +GI    I      E+++ +T+  V + I+  
Sbjct: 96  LLSKKIYDQFKEALEDRANKGHFAEITFIGIKSAVIKTHKKIEDSLEVTVDFVSEIITCI 155

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            DKD  ++S D +    V D W F ++I  SNPNW+LI+T
Sbjct: 156 KDKDKNIVSGDSDKIKTVYDTWVFSKDIKSSNPNWLLINT 195


>gi|91762532|ref|ZP_01264497.1| Putative translocase transmembrane protein with Tim44 Pfam domain
           [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718334|gb|EAS84984.1| Putative translocase transmembrane protein with Tim44 Pfam domain
           [Candidatus Pelagibacter ubique HTCC1002]
          Length = 197

 Score =  192 bits (487), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 34/220 (15%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
             I+L A I  F+FL+LRG+LGKKTG E      F  ++            +      +N
Sbjct: 8   IDIILLAMIAGFIFLRLRGILGKKTGFEGKIPPQFEKEFQK--------TNITPKPVSEN 59

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK--VHAIEK 128
            D +                          K+FL  A+ +YE I+  F +    + A + 
Sbjct: 60  FDEV------------------------SQKEFLKGAKIAYETIITDFSDSDNKLIASKP 95

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
           L++ ++Y  F ++L  R +     + + +GI    I      E+++ +T+  V + I+  
Sbjct: 96  LLNKKIYDQFKEALEDRANKGHFAEITFIGIKSAVIKTHKKIEDSLEVTVDFVSEIITCI 155

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            DKD  ++S D +    V D W F ++I  SNPNW+LI+T
Sbjct: 156 KDKDKNIVSGDSDKIKTVYDTWVFSKDIKSSNPNWLLINT 195


>gi|190571472|ref|YP_001975830.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018875|ref|ZP_03334683.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357744|emb|CAQ55195.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995826|gb|EEB56466.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 219

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 97/220 (44%), Gaps = 18/220 (8%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
              ++++A +  F+F +L   LG+    N K  +G        S+  E  +  +      
Sbjct: 1   MIELVIYALLAAFIFSRLYNSLGRSASLNLKKLTGVLD----VSQSKEDVVENIEDYIYS 56

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
           ++  SI   +            I+    +F   +F+  +  ++E I+  F +G +  ++ 
Sbjct: 57  NDKSSIETTYE----------QILQKNKEFSISNFIEGSSIAFELIIKYFNQGNLPQLKS 106

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
           L+D  +Y  F D +  RK   +  +S +V I   KI+   + +N ++I +  + + I+  
Sbjct: 107 LLDKDLYNSFVDKIKHRK---ETHESIIVSIVSQKILEIKLVKNVIFIAVYFLSEQINFV 163

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            + +  + S       KV D+W F +NI  S+  W+L+S 
Sbjct: 164 KNNEGNITSGSMSTINKVEDVWQFKKNINSSDLTWLLVSI 203


>gi|254417984|ref|ZP_05031708.1| Tim44-like domain superfamily [Brevundimonas sp. BAL3]
 gi|196184161|gb|EDX79137.1| Tim44-like domain superfamily [Brevundimonas sp. BAL3]
          Length = 213

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 88/225 (39%), Gaps = 22/225 (9%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           F I++FA I   V  QL  VLGK+ G +              + D + + +      + +
Sbjct: 5   FQIVIFAVIAAIVLFQLYNVLGKRVGRQ-------------PQEDAKALPSSPTSTAEAS 51

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
                +   + +     +  + +    FDP  F+  AR +YE IV  +  G   A+  L+
Sbjct: 52  KTPALDAATLAS-----IAGLKARDPAFDPNRFVEGARQAYETIVRGYAAGDRAALTPLL 106

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              V   F+  ++ R++  +      +      +  A+++ +     +R + +  S    
Sbjct: 107 TPNVMASFDAGIAARETRGETETVEFLFPPRADLEGATVQGDKAVAKVRFLAELRSRVTK 166

Query: 191 KDNLL---ISSDP-EIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
                   ++ +P     +  + WTF R +  ++PNWVL   +  
Sbjct: 167 ASGDTADSVTGEPLVEERRTAEHWTFERTLGAADPNWVLARVEPA 211


>gi|302381470|ref|YP_003817293.1| import inner membrane translocase subunit Tim44 [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192098|gb|ADK99669.1| import inner membrane translocase subunit Tim44 [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 214

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 89/225 (39%), Gaps = 21/225 (9%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           FLI++FA I  FV  QL  VLGKK G  +P     +   + +   +  + T G       
Sbjct: 5   FLIVIFAVIAAFVLFQLYNVLGKKVGR-QPQDDAKAPPALPATGPDAPLRTPG------- 56

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
                    +   L      + +    FDP  F++ AR +YE IV  +  G   A++ L+
Sbjct: 57  ---------VDATLLAAAASLRARDPAFDPAKFIDGARQAYETIVRGYAAGDRAALKPLL 107

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              V   F   ++ R++  +  +   +      +  AS E +     +R + +  S    
Sbjct: 108 TPAVLDSFETGIAARETRGETEQVEFLHPPRADLELASAEGDRAVAKVRFLAELRSKIMP 167

Query: 191 KDNLLISSDPEIF----GKVIDIWTFVRNIPPSNPNWVLISTKLG 231
             +      P        +  + WTF R++  S+PNWVL   +  
Sbjct: 168 PADEATPGAPAEPRIEERRTAEHWTFERSLGASDPNWVLARVEPA 212


>gi|262277816|ref|ZP_06055609.1| import inner membrane translocase subunit Tim44 [alpha
           proteobacterium HIMB114]
 gi|262224919|gb|EEY75378.1| import inner membrane translocase subunit Tim44 [alpha
           proteobacterium HIMB114]
          Length = 204

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 29/226 (12%)

Query: 7   DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
           + G   I+L A +  F+ L+LR  LGK   N  P    F+      +  +  I       
Sbjct: 4   NFGYIDIILLAIMAGFILLRLRSTLGKGADN-MPMKARFTQAQSNEEFTKPIIE------ 56

Query: 67  KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
                                  +I    T FD K F+  A  +YE I+++F +G   A+
Sbjct: 57  ----------------------DEIKQDTTKFDEKIFIKGAEAAYEIIINAFAKGDRKAL 94

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
           + L+   +Y++F   +  R+S + + + S +GI + KI++   ++    +  + V + ++
Sbjct: 95  KPLLTKDLYKNFEGVIKERESKKISSQMSFIGIKETKILDIDNKDTFYKVKTKFVSEIVN 154

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
                   +I  +PE    V D+W F +++  ++P W L      E
Sbjct: 155 CLKSDKGEVIEGNPEEIKLVTDVWVFEKDLKNNDPTWYLTELSSEE 200


>gi|296115110|ref|ZP_06833751.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295978211|gb|EFG84948.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 227

 Score =  188 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 100/225 (44%), Gaps = 15/225 (6%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           ++    +  F+ L+LRG+LGK+ G E P +         +         +    +     
Sbjct: 12  LVFLGLVAVFLVLRLRGILGKRVGAE-PAARTMQPTPTPAP-------VIEGKPEPVAPA 63

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
           +  ++    TR+ +V+  I +    F P  F+ +  +++  IV ++  G +  + + +  
Sbjct: 64  TTYDIPTPDTRVGQVLSAIAARQQGFTPDGFIRQVEDAFRQIVQAYAVGDIETLRQHLTE 123

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT----VYITIRIVGQFISAS 188
             +  F  ++ +R+   + ++S +  I DM II+A +  +       I +RIV   +S +
Sbjct: 124 STFTAFEAAIVSRQQAHETMRSEIRDITDMAIIDAELSPDVSVPYARIEVRIVSDQVSVT 183

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKLG 231
            D++   +S   +   +  D+WTF R +  + P   W L +++  
Sbjct: 184 LDQNGQPVSG-VDAVTEFSDLWTFERILGAATPGAQWRLGASRSA 227


>gi|329891166|ref|ZP_08269509.1| tim44-like domain protein [Brevundimonas diminuta ATCC 11568]
 gi|328846467|gb|EGF96031.1| tim44-like domain protein [Brevundimonas diminuta ATCC 11568]
          Length = 205

 Score =  188 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 20/222 (9%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F I++FA I   +  QL  VLGKK G                ++ E     +       
Sbjct: 2   TFQIVIFAVIAAVLLFQLYNVLGKKVG----------------RQPEDNPKPVPVPAAPA 45

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
                     +   L   +  + +   +FDP  FL  AR +YE IV ++ +G   A+  L
Sbjct: 46  GAPEAARGPVVDPALTAAIAGLKTRDPNFDPHRFLEGARQAYETIVRAYAKGDRDALRPL 105

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           +  +V   F   ++ R++        LV      +  A+ E +     +R + +   +  
Sbjct: 106 LTDKVMGSFEAGIAAREARGDAESVELVHAPRADLELATTEGDRALAKVRFLAEVRGSLT 165

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
                 ++ +     +  +IWTF R +  S+PNW L   +  
Sbjct: 166 PSGGETVTEE----RRTAEIWTFERRLGASDPNWALARVEPA 203


>gi|167648993|ref|YP_001686656.1| import inner membrane translocase subunit Tim44 [Caulobacter sp.
           K31]
 gi|167351423|gb|ABZ74158.1| import inner membrane translocase subunit Tim44 [Caulobacter sp.
           K31]
          Length = 199

 Score =  187 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 90/223 (40%), Gaps = 25/223 (11%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F  ++ A +   +  QL   LG++ G  +P     +     + RD + +   G+     
Sbjct: 1   MFEWIILAALAAVILYQLYATLGRRVGR-QPEDAPAAVPASVAPRDVKTLEVPGEAL--- 56

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
                             +  + +   DFD   FL+ AR +YE IV +F  G    ++ L
Sbjct: 57  ----------------SGLAALRARQADFDIGHFLSGARQAYEMIVKAFAAGDRETLKPL 100

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           + + V  +F  +++ R++  +  K+  +      + +  +E +     +RI+ +  + S 
Sbjct: 101 LAADVMANFEAAIADREAAGRTEKAEFLATPRTDLDSIKVEGDVARAVVRILAEVRTRST 160

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
                 +        +  D+WTF R++   NPNW L+   + E
Sbjct: 161 SAAGDAVDD-----RRTADLWTFERDLKSRNPNWTLVRVDVAE 198


>gi|162147851|ref|YP_001602312.1| transporter protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786428|emb|CAP56010.1| putative transporter protein [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 228

 Score =  187 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 101/227 (44%), Gaps = 16/227 (7%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           F ++LF  +  F+ L+LR +LG + G E             S     G +  G+ +    
Sbjct: 12  FDLVLFGLVAAFLALRLRSILGTRVGVE--------PAPPPSAVPRPGPVIEGRAEPPAT 63

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           L   +   P  TR+ +V+  I     DF P  FL     ++  IV +F  G V  + + +
Sbjct: 64  LTDYDVPAPE-TRVGQVLAAIAQQERDFVPAQFLKGVEAAFRQIVLAFAAGDVAMLRERL 122

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT----VYITIRIVGQFIS 186
            +  +  F  ++ +R+ + +  K+ +  I  + I++A+IEE        I +RIV   IS
Sbjct: 123 TANAFSAFEAAIRSREQSGEIQKAEVRAIASLAIVDAAIEERDGATHARIDVRIVSDQIS 182

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP--SNPNWVLISTKLG 231
            + DKD   ++   +   +  D+WTF R +    S   W L +++  
Sbjct: 183 LTSDKDGHPVAG-TDAVTEFSDLWTFERPLGVAISGAAWRLAASRSA 228


>gi|209542471|ref|YP_002274700.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530148|gb|ACI50085.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 226

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 101/227 (44%), Gaps = 16/227 (7%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           F ++LF  +  F+ L+LR +LG + G E             S     G +  G+ +    
Sbjct: 10  FDLVLFGLVAAFLALRLRSILGTRVGVE--------PAPPPSAVPRPGPVIEGRAEPPAT 61

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           L   +   P  TR+ +V+  I     DF P  FL     ++  IV +F  G V  + + +
Sbjct: 62  LTDYDVPAPE-TRVGQVLAAIAQQERDFVPAQFLKGVEAAFRQIVLAFAAGDVAMLRERL 120

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT----VYITIRIVGQFIS 186
            +  +  F  ++ +R+ + +  K+ +  I  + I++A+IEE        I +RIV   IS
Sbjct: 121 TANAFSAFEAAIRSREQSGEIQKAEVRAIASLAIVDAAIEERDGATHARIDVRIVSDQIS 180

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP--SNPNWVLISTKLG 231
            + DKD   ++   +   +  D+WTF R +    S   W L +++  
Sbjct: 181 LTSDKDGHPVAG-TDAVTEFSDLWTFERPLGVAISGAAWRLAASRSA 226


>gi|330993443|ref|ZP_08317378.1| putative transporter protein [Gluconacetobacter sp. SXCC-1]
 gi|329759473|gb|EGG75982.1| putative transporter protein [Gluconacetobacter sp. SXCC-1]
          Length = 258

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 103/237 (43%), Gaps = 20/237 (8%)

Query: 6   MD--SGDF--LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61
           M+  SG F   +++   +  F+ L+LR +LG++ G E P     + +       E+ +  
Sbjct: 31  MNFISGHFPLDLVVLGLVAVFLVLRLRSILGRRVGAE-PAVRPMAAQPAAQPMVEKPVEP 89

Query: 62  LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
                         E+    TR+  V+  I ++   F P++F      ++  IV ++  G
Sbjct: 90  PPPAITY-------EIPTPDTRVGGVLARIAALQPGFTPQEFARGTETAFRQIVGAYAAG 142

Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT-----VYI 176
            +  + + + +  +  F  ++ +R+   + ++S +  I D+ II A ++E         I
Sbjct: 143 DLDVLRERLTAATFGAFEAAIQSRQQAGEVLRSEIRDITDIAIIGAEVDEAAGPSPLARI 202

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKLG 231
            +RIV   IS + D     ++   +   +  D+WTF R +  + P   W L +++  
Sbjct: 203 EVRIVSDQISLTVDSSGHPVAG-VDAVTEFSDLWTFERLLGVNAPGAGWRLGASRSA 258


>gi|295691579|ref|YP_003595272.1| import inner membrane translocase subunit Tim44 [Caulobacter segnis
           ATCC 21756]
 gi|295433482|gb|ADG12654.1| import inner membrane translocase subunit Tim44 [Caulobacter segnis
           ATCC 21756]
          Length = 198

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 89/223 (39%), Gaps = 26/223 (11%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              IL  A +   V  QL   LG++ G +   +   +G    +         L       
Sbjct: 1   MLQILFLAAVAAIVLYQLYATLGRRVGRQPEDTPVKAGAGGPAPVTTDPHPVLR------ 54

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
                          ++ +  + +   DFDP  F+  AR +YE IV ++ +G    ++ L
Sbjct: 55  ---------------SEGLAALKARQPDFDPAKFMTGARAAYEQIVTAYADGDRETLKPL 99

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           +   V  +F  +++ R++  ++ K   +    + + +  +  +T    +RI+ +  + + 
Sbjct: 100 LAPEVMANFEQAMAAREAAGRSEKVEFLTSPRLDLESVDLVGDTAKAVVRILAEVRTRTK 159

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           D+    +        +  ++WTF R +  +NPNW+L      E
Sbjct: 160 DERGEGVDD-----RRTAELWTFEREVRNANPNWLLSFVAAAE 197


>gi|16127971|ref|NP_422535.1| hypothetical protein CC_3741 [Caulobacter crescentus CB15]
 gi|221236793|ref|YP_002519230.1| transporter [Caulobacter crescentus NA1000]
 gi|13425513|gb|AAK25703.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220965966|gb|ACL97322.1| transporter [Caulobacter crescentus NA1000]
          Length = 234

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 87/222 (39%), Gaps = 29/222 (13%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           F IL  A +   V  QL   LG++ G                ++ E   +T   G     
Sbjct: 41  FQILFLAAVAALVLYQLYSTLGRRVG----------------RQPEDAAVTAMPGAAPAP 84

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           +D + +         + +  + +   DFDP  FL   R +YE IV ++ EG    +  L+
Sbjct: 85  VDPVLQ--------AEGVATLRARQPDFDPARFLMGVRAAYEQIVKAYAEGDRETLTPLL 136

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              V  +F  ++  R++  +  K   +    + +    +  +T    +RI+ +  + + D
Sbjct: 137 APDVMDNFERAMVARETAGRTEKVEFLTPPRVDLERVDVVGDTAKAVVRILAEVRTRTKD 196

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           +    +        +  ++WTF R +  ++PNW L      E
Sbjct: 197 ERGEGVDD-----RRTAELWTFEREVKSTDPNWHLTFVAAAE 233


>gi|261314892|ref|ZP_05954089.1| import inner membrane translocase subunit Tim44 [Brucella
           pinnipedialis M163/99/10]
 gi|261303918|gb|EEY07415.1| import inner membrane translocase subunit Tim44 [Brucella
           pinnipedialis M163/99/10]
          Length = 168

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 82/152 (53%), Gaps = 4/152 (2%)

Query: 18  FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73
                +FLQLR VLG++TGNEKP    +    S     +  +   +++L +   + +  +
Sbjct: 17  IAAVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTA 76

Query: 74  INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
           I+++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   
Sbjct: 77  IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKD 136

Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165
           VY+ F  ++  R+   + V+SS VGID   I 
Sbjct: 137 VYEGFVAAIDEREKRGETVRSSFVGIDKAGIA 168


>gi|254707406|ref|ZP_05169234.1| calcium-binding EF-hand [Brucella pinnipedialis M163/99/10]
          Length = 164

 Score =  184 bits (468), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 82/152 (53%), Gaps = 4/152 (2%)

Query: 18  FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73
                +FLQLR VLG++TGNEKP    +    S     +  +   +++L +   + +  +
Sbjct: 13  IAAVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTA 72

Query: 74  INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
           I+++ P G+ +N+ +R I +V   F+P  F++  + +YE IV SF +G    ++ L+   
Sbjct: 73  IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKD 132

Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165
           VY+ F  ++  R+   + V+SS VGID   I 
Sbjct: 133 VYEGFVAAIDEREKRGETVRSSFVGIDKAGIA 164


>gi|330813377|ref|YP_004357616.1| putative translocase transmembrane protein with Tim44 Pfam domain
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486472|gb|AEA80877.1| putative translocase transmembrane protein with Tim44 Pfam domain
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 193

 Score =  184 bits (467), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 31/210 (14%)

Query: 18  FITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINEL 77
            I  F+FL+LR VLGK                     D   I      K +D+   + E+
Sbjct: 1   MIAGFIFLRLRNVLGK-------------------GADNSPIKPNFANKSRDDFSFVKEV 41

Query: 78  FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD 137
                          S    FD   F   A  +YE I+++F +G   +++ L+  ++Y D
Sbjct: 42  ------------RTESNKPVFDEASFKKGAEYAYEMIINAFAKGDKQSLKPLLTKKLYLD 89

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197
           F   +  R   +     + +GI+ M I   S       +T R + Q I+   ++   ++ 
Sbjct: 90  FEKIIDDRNEKKLTSSLTFIGIEKMSIDKVSNVNTKYKVTARFISQIINCLKNEKGEVVE 149

Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
            D E      D+W+F R++  S+P W L  
Sbjct: 150 GDAEKTKTTTDVWSFERDLKDSDPTWYLTE 179


>gi|254295483|ref|YP_003061506.1| import inner membrane translocase subunit Tim44 [Hirschia baltica
           ATCC 49814]
 gi|254044014|gb|ACT60809.1| import inner membrane translocase subunit Tim44 [Hirschia baltica
           ATCC 49814]
          Length = 200

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 26/223 (11%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
           D  +++FA + FFV  +L  VLG KTG E P S                     +G  + 
Sbjct: 2   DIELIIFAAVAFFVLYRLYSVLGTKTGAEPPPSVVREATQKRKNS---------EGSDES 52

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
           N+      F         M +I  + + F P DF  +++ +YE IV++F EG    +  L
Sbjct: 53  NVTPFRPSFT--GPGASAMEEISQIDSTFSPSDFTRKSKKAYEMIVEAFAEGDKETLSNL 110

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYITIRIVGQFISAS 188
           +   VY+ +  ++  R+ N       L+ +   +I +A  ++ +   +++    Q     
Sbjct: 111 LVDDVYEAYVSAIDEREQNN-TEPLRLMRLKSAEIADAELLDGDIGQVSVSFEAQL---- 165

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
                    SD E      +IWTF R++  SNP W+L      
Sbjct: 166 ---------SDGENLRTAKEIWTFERSLKSSNPAWLLGGVSEA 199


>gi|296535049|ref|ZP_06897314.1| Tim44 domain protein [Roseomonas cervicalis ATCC 49957]
 gi|296264626|gb|EFH10986.1| Tim44 domain protein [Roseomonas cervicalis ATCC 49957]
          Length = 165

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 1/155 (0%)

Query: 77  LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136
           +    T + + ++ I      FDP  FL  A  ++  IV +F  G    +  L+    Y 
Sbjct: 12  VPDPRTPVGQALQRIRQADAGFDPYAFLGGAEGAFRMIVTAFAAGDRATLRDLLSEDTYA 71

Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196
            F  +++ R+S  +  ++ + G+ +M I  A +  +   IT+RIV   ++ +       +
Sbjct: 72  GFEQAITARESAGERQRTEIHGVHEMAIDAADLRGSVADITLRIVSDQVNLTTGPQGEAV 131

Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           S   E   ++ D+WTF R++   +P W L+ T+  
Sbjct: 132 SG-TEAVTELTDVWTFQRDLRSGDPTWKLVGTQAA 165


>gi|241762227|ref|ZP_04760309.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241373274|gb|EER62893.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 217

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 8/206 (3%)

Query: 27  LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK 86
           L  VLG++TG+E+ F+           +    ++     +KK           +      
Sbjct: 18  LYNVLGRRTGHEQSFTKPTEVSTTVVAQPNTALLMPASEQKKRE-------EIVQPEAWD 70

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
            +R IVS    FD   F+  A+++Y  I+++F++     +  +V   V++ F   +  R+
Sbjct: 71  GIRRIVSRDAHFDLTGFIEGAKSAYGKILEAFWQNDRSKLADMVSKDVFEAFQQVIEKRE 130

Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
           +    +++ LV ID   +  A IE +   IT+       +   + + ++I+         
Sbjct: 131 AEGSRLENRLVNIDKALVQKAGIEGDNAIITVSYDAWISTMLRNHEGIMIAGSSTDALPT 190

Query: 207 IDIWTFVRNIPP-SNPNWVLISTKLG 231
            D+WTF R+I      NW+L+ T   
Sbjct: 191 HDVWTFSRSIKQEPKTNWLLVETLAA 216


>gi|56552532|ref|YP_163371.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|260753807|ref|YP_003226700.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|56544106|gb|AAV90260.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|258553170|gb|ACV76116.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 217

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 8/206 (3%)

Query: 27  LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK 86
           L  VLG++TG+E+ F+           +    ++     +KK           +      
Sbjct: 18  LYNVLGRRTGHEQSFTKPAEVSTTVVAQPNTALLMPASEQKKRE-------EIVQPEAWD 70

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
            +R IVS    FD   F+  A+++Y  I+++F++     +  +V   V++ F   +  R+
Sbjct: 71  GIRRIVSRDAHFDLTGFIEGAKSAYGKILEAFWQNDRSKLADMVSKDVFEAFQQVIEKRE 130

Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
           +    +++ LV ID   +  A IE +   IT+       +   + + ++I+         
Sbjct: 131 AEGSRLENRLVNIDKALVQKAGIEGDNAIITVSYDAWISTMLRNHEGIMIAGSSTDALPT 190

Query: 207 IDIWTFVRNIPP-SNPNWVLISTKLG 231
            D+WTF R+I      NW+L+ T   
Sbjct: 191 HDVWTFSRSIKQEPKTNWLLVETLAA 216


>gi|11992022|gb|AAG42409.1|AF300471_12 unknown [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 201

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 8/206 (3%)

Query: 27  LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK 86
           L  VLG++TG+E+ F+           +    ++     +KK           +      
Sbjct: 2   LYNVLGRRTGHEQSFTKPAEVSTTVVAQPNTALLMPASEQKKRE-------EIVQPEAWD 54

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
            +R IVS    FD   F+  A+++Y  I+++F++     +  +V   V++ F   +  R+
Sbjct: 55  GIRRIVSRDAHFDLTGFIEGAKSAYGKILEAFWQNDRSKLADMVSKDVFEAFQQVIEKRE 114

Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
           +    +++ LV ID   +  A IE +   IT+       +   + + ++I+         
Sbjct: 115 AEGSRLENRLVNIDKALVQKAGIEGDNAIITVSYDAWISTMLRNHEGIMIAGSSTDALPT 174

Query: 207 IDIWTFVRNIPP-SNPNWVLISTKLG 231
            D+WTF R+I      NW+L+ T   
Sbjct: 175 HDVWTFSRSIKQEPKTNWLLVETLAA 200


>gi|58040316|ref|YP_192280.1| putative translocase transmembrane protein [Gluconobacter oxydans
           621H]
 gi|58002730|gb|AAW61624.1| Putative translocase transmembrane protein [Gluconobacter oxydans
           621H]
          Length = 265

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 100/243 (41%), Gaps = 25/243 (10%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFSKRDERGIITLGKGK- 66
           +++   +   + ++L  VLG++ G      E+P +GF  G    +  D            
Sbjct: 24  LVVLFVLAVALGVRLYRVLGRRVGMQGVRQERPGAGFGPGAQKGAAPDAARPSIPPPLPG 83

Query: 67  -------------KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
                         +   D   E+    TR+  V+ +I SV+  F P  FL EA  ++  
Sbjct: 84  QVAGKPGAAPGVFDQAVPDVAYEIPAPATRVGTVLGEIGSVFPGFSPDGFLKEAEGTFRQ 143

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE-- 171
           +V +F  G   A+EKL+       F+ ++  R    +  +S L GI+ + I++A +    
Sbjct: 144 VVPAFAVGDRTALEKLLTPASMDSFSAAIDARVQAGETQRSDLRGIESLSILDAMLVSAE 203

Query: 172 ---NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
                  I ++IV + ++   D++   +    E   +  D+W F R    S+  W L ++
Sbjct: 204 DGTRVGRIEVKIVSRQVNILTDREGEPVVG-TEAVTEFHDLWLFERVAGQSDARWRLAAS 262

Query: 229 KLG 231
           +  
Sbjct: 263 RPA 265


>gi|114571519|ref|YP_758199.1| import inner membrane translocase Tim44 [Maricaulis maris MCS10]
 gi|114341981|gb|ABI67261.1| import inner membrane translocase, subunit Tim44 [Maricaulis maris
           MCS10]
          Length = 206

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 87/216 (40%), Gaps = 17/216 (7%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
           D   L+      F   +L  VLG++ G+ +  +     +          +    +G    
Sbjct: 2   DIWTLIGGVAAIFFAYRLYTVLGRREGHMEAPAPRTKPEAASDSDKAPSLRPAFEGPAAA 61

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
            L++I                   V T FDP      A+N+Y  IV++F  G    +E L
Sbjct: 62  GLEAIAA-----------------VDTRFDPTAVKEGAQNAYVMIVEAFAAGDRKVLEPL 104

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           +   V   +  ++  R    + V++ +  + D+ II A   +NT  I +R V +  + + 
Sbjct: 105 LAPNVLDRYTTAIDQRADRGETVRTEVERLKDVDIIEAGHADNTARIKVRFVAEIATETR 164

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
           D D+ +++ D      V + W F R     +PNWVL
Sbjct: 165 DSDDAVVAGDIGRLSTVTEDWVFERRTNKGDPNWVL 200


>gi|99034421|ref|ZP_01314428.1| hypothetical protein Wendoof_01000767 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 198

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 90/203 (44%), Gaps = 18/203 (8%)

Query: 28  RGVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK 86
              LG+    N K  +         S+  E  +  +      ++ +SI   +        
Sbjct: 1   YNSLGRSANLNLKKLTNVLD----VSRSGEDVVENIEGYIDSNDENSIKVTY-------- 48

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
             + I+    DF    F+  +  ++E I+  F +G +  ++ L+D  +Y +F + +  RK
Sbjct: 49  --KQILKKNKDFSISHFIEGSSIAFELIIKCFNQGNLSQLKPLLDKDLYDNFAEKIKHRK 106

Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
              +  +S +V I   KI+   + +N V+I +  + + I+   + +  +IS       KV
Sbjct: 107 ---EVHESIIVSIVSQKILEIKLVKNAVFIAVYFLSEQINFVKNNEGDIISGSTSTINKV 163

Query: 207 IDIWTFVRNIPPSNPNWVLISTK 229
            D+W F +N+  S+P+W+L+S  
Sbjct: 164 EDVWQFKKNVNSSDPSWLLVSIH 186


>gi|315497202|ref|YP_004086006.1| import inner membrane translocase subunit tim44 [Asticcacaulis
           excentricus CB 48]
 gi|315415214|gb|ADU11855.1| import inner membrane translocase subunit Tim44 [Asticcacaulis
           excentricus CB 48]
          Length = 207

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 20/220 (9%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           +L+ A I   V  QL  VLG++ G             V    D  G       + K    
Sbjct: 5   LLILALIAVVVLFQLYNVLGRRVGF-----KAEDKPVVPKTEDSEGPFNRPGQEPKA--- 56

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
                 P   R+   +  + S    F+  +F+ +AR +YE IV +F  G++  ++  +  
Sbjct: 57  -----QPERLRMPN-LDALKSRDAHFNEINFVEKAREAYEQIVLAFNRGEIEGLKDRLSE 110

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            VY  F  ++  R    K +  S V      +    ++++   + +R + + +    D D
Sbjct: 111 SVYGVFAKAIEARGEQ-KAMTVSFVESPKTDLDQIDLKDDRASVRVRFLSELLYEMADPD 169

Query: 193 NLLISSDP-EIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
                 +P +   +  + WTF +N+      W+L   +  
Sbjct: 170 G----GEPKKAHRRTAEFWTFQKNLKSPTNPWILSRVEAA 205


>gi|289609222|emb|CBI60483.1| unnamed protein product [Sordaria macrospora]
          Length = 173

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 78/182 (42%), Gaps = 9/182 (4%)

Query: 18  FITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINEL 77
            +  F+ ++L  VLGK+TG+E P       +           +T            +   
Sbjct: 1   MVAAFLAMRLYAVLGKRTGHE-PLPRTADERIATPPVARPIEVTPEAR--------VLGP 51

Query: 78  FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD 137
             + +     +R +++    FD   F+  A+++Y  I+++F++G    +E L +  V + 
Sbjct: 52  RHVESGAESGLRSLIAADPSFDVAQFIEGAKSAYRMILEAFWKGDEATLEWLTERDVREA 111

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197
           F  +++ R +    + + LV I+   +  AS+E     +++R      + + D +  +++
Sbjct: 112 FAQAIADRNAAGHVLDNRLVSIERAVVTEASVEGGVARVSVRFDADIAAITRDAEGNIVA 171

Query: 198 SD 199
             
Sbjct: 172 GS 173


>gi|88608273|ref|YP_506249.1| Tim44-like domain-containing protein [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600442|gb|ABD45910.1| Tim44-like domain protein [Neorickettsia sennetsu str. Miyayama]
          Length = 208

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 92/218 (42%), Gaps = 15/218 (6%)

Query: 12  LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71
            ++L+A + FF+F +L    G+ +   +        K +  K+               ++
Sbjct: 2   ELILYAILVFFIFNRLYASFGRISVERELGFKAAEVKEILEKK-------------VRDI 48

Query: 72  DSINELFPIG-TRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
           D    + P     +    ++I S++  DF    F+  A  ++E    +F +  +  + KL
Sbjct: 49  DQFTYVAPSDLQEIVSAKKEIESLWKQDFSTDRFMEGAERAFEMFTKAFTDCDLKVLSKL 108

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           +  + +   ++ +  RK     ++ +LV +    +I   + +  +Y T+R V + I+   
Sbjct: 109 LSKKAFSVVSEKIEQRKIRGNTLERTLVALRSKNLIKLDVIKGVLYATVRFVSEQINVVR 168

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
           D    ++S D +    + D W F R++   + +WV+  
Sbjct: 169 DDAGRVLSGDHDTIEVIEDKWIFERSLKSPHNSWVVCE 206


>gi|254796736|ref|YP_003081572.1| hypothetical protein NRI_0348 [Neorickettsia risticii str.
           Illinois]
 gi|254589983|gb|ACT69345.1| conserved hypothetical protein [Neorickettsia risticii str.
           Illinois]
          Length = 208

 Score =  161 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 94/218 (43%), Gaps = 15/218 (6%)

Query: 12  LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71
            ++L+A + FF+F +L    G+              +  F   + + I+     KK   +
Sbjct: 2   ELVLYAILVFFIFNRLYASFGR---------VSVERELGFKAAEVKEILE----KKVRAI 48

Query: 72  DSINELFPIG-TRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
           D    + P     +    ++I S++  DF    F+  A  ++E    +F +  +  + KL
Sbjct: 49  DQFTYVAPSDLQEIVSAKKEIESLWKQDFSTDRFMEGAERAFEMFTKAFTDCDLKVLSKL 108

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           +  + +   ++ ++ RK     ++ +LV +    +I   + +  +Y T+R V + I+   
Sbjct: 109 LSKKAFSVVSEKVAQRKIRGNTLERTLVALRSKNLIKLDVIKGVLYATVRFVSEQINVVR 168

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
           D    ++S D +    + D W F R++   N +WV+  
Sbjct: 169 DDAGRILSGDHDTIEVIEDKWVFERSLRSPNNSWVVCE 206


>gi|329847374|ref|ZP_08262402.1| tim44-like domain protein [Asticcacaulis biprosthecum C19]
 gi|328842437|gb|EGF92006.1| tim44-like domain protein [Asticcacaulis biprosthecum C19]
          Length = 212

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 95/233 (40%), Gaps = 34/233 (14%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              +++FA +   +  QL  VLG+K G                 R E   +T+ KG    
Sbjct: 1   MVALIIFAIVAVVILFQLYNVLGRKVGF----------------RAEDKPVTV-KGDDFG 43

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
           +L +  +  P  +R+   +  + +   +F+  +FL +AR SYE +V +F +G++ A++  
Sbjct: 44  DLSTKTDKLPEASRMPN-LEMLKTRDANFNELNFLEKARESYEQVVIAFHKGELDAVKDK 102

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           +   VY  F  +L  R + E+ +  S V      I +   ++    I +R + +     Y
Sbjct: 103 LSDTVYGIFAKALVGRAAPEETL--SFVDQPKADIDHIDFKDEVAQIRVRFLSEL---VY 157

Query: 190 DKDNLLISSD-----------PEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           +K      S                 +  + WTF + +  +N  W+L   +  
Sbjct: 158 EKTEAPAESAVPPTKADAPKVHRSHKRTAEYWTFQKGMKVANSPWLLTKVEAA 210


>gi|317050977|ref|YP_004112093.1| import inner membrane translocase subunit Tim44 [Desulfurispirillum
           indicum S5]
 gi|316946061|gb|ADU65537.1| import inner membrane translocase subunit Tim44 [Desulfurispirillum
           indicum S5]
          Length = 249

 Score =  141 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 14/229 (6%)

Query: 7   DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
           +S  F I    FI   +F  +R + G+ + N  P   +  G      +D        + +
Sbjct: 28  NSATFSIFDILFIGAIIFFIVRALRGRTSRNNNPKDDWTLG---GKDQDSYSPTASNEPR 84

Query: 67  KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
                D I  L+P  T  +K +R I     +F   DFL  AR  +  +  +    ++  I
Sbjct: 85  TTPGADKITSLYPEQT-THKGLRPIEMSDPNFTEGDFLAAAREVFSTVQQAKANEELEQI 143

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
           E L+D  +     + ++T +   K V+     I    + +A  +  T  IT++       
Sbjct: 144 EFLMDKAMLNQLQEDIATWRKEGKRVQLDSATIHSALVADAIQQMGTDCITVKF-----E 198

Query: 187 ASYDKDNLL--ISSDPEIFGK-VIDIWTFVRNIPPSNPNWVLISTKLGE 232
           A+ D+  L   +  +PE   + V + W F+RNI      W LI     +
Sbjct: 199 ATLDRTFLPVDVEGEPEPVHETVTEYWRFMRNIG--EAAWQLIGVYDAD 245


>gi|261253352|ref|ZP_05945925.1| hypothetical protein VIA_003377 [Vibrio orientalis CIP 102891]
 gi|260936743|gb|EEX92732.1| hypothetical protein VIA_003377 [Vibrio orientalis CIP 102891]
          Length = 292

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 80/217 (36%), Gaps = 23/217 (10%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F +F  +R +LG K G+        +      K ++  +    + +      
Sbjct: 98  ILIMGLIAFVIFKLMRSMLGAKQGSMNQQRQQPAFGGSAPKFEQPNVHNFEQPQNAPQGG 157

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
                       N            FD   F+N +R  Y  +  ++   ++H IE+ V  
Sbjct: 158 GFGFGAQTDVPHNYP--------PGFDQSAFINGSREHYRILQGAWNHNQLHTIEEYVSP 209

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            +Y+D     + R        + ++ + D +I+ A  +     ++++  G++  A     
Sbjct: 210 SLYEDLK---AERAKLNGEQHTDVMYV-DAEIVRADHDATKAQLSLQFSGRYRDAV---- 261

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
              I  D      + DIW   R++   N  W+++  +
Sbjct: 262 -EGIEED------ITDIWHLERDLTTPNAPWLIVGIQ 291


>gi|149192059|ref|ZP_01870285.1| hypothetical protein VSAK1_02529 [Vibrio shilonii AK1]
 gi|148834122|gb|EDL51133.1| hypothetical protein VSAK1_02529 [Vibrio shilonii AK1]
          Length = 294

 Score =  138 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 86/222 (38%), Gaps = 30/222 (13%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
           IL+F  I F +F  +RG+LG K G      ++P  G  +      + + +       G  
Sbjct: 97  ILIFGLIAFVIFKFMRGMLGAKQGSMNQQRQQPAFGGNTRNQFEQQPNFQNFEQPQNGGA 156

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
                       +                 FD   FLN AR  Y  +  ++   ++H IE
Sbjct: 157 ATGGFGAAGHSDVPHNYP----------PGFDQAAFLNGAREHYRILQGAWNHNELHTIE 206

Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
           + V   + QD    ++ R   E    + ++ + D +I+ A  + N   ++++  G++  A
Sbjct: 207 EYVSPSLLQDL---MAERAKLEGEQHTDVMYV-DAEIVRADFDANKAQLSLQFSGRYRDA 262

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
             +     +  D      + DIW   R++   N  W+++  +
Sbjct: 263 VEN-----VEED------IEDIWHLERDLTVPNAPWLIVGIQ 293


>gi|260767913|ref|ZP_05876847.1| hypothetical protein VFA_000962 [Vibrio furnissii CIP 102972]
 gi|260615943|gb|EEX41128.1| hypothetical protein VFA_000962 [Vibrio furnissii CIP 102972]
 gi|315179616|gb|ADT86530.1| Tim44-like domain family [Vibrio furnissii NCTC 11218]
          Length = 291

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 93/218 (42%), Gaps = 26/218 (11%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F +F  +RG+LG K G+    +     +  F   +           ++ N+ 
Sbjct: 98  ILIIGLIAFVIFKLMRGLLGAKQGS---MNQHQQQQPAFGGMNRNTF-------EQPNVH 147

Query: 73  SINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
           +  +    G   +++  D+   Y   FD   F+N AR  Y  +  ++   ++  IE+ V 
Sbjct: 148 NFEQPQNSGGFGSQMQSDVPHNYPDGFDRVAFVNGAREHYRILQGAWNHNQLETIEEYVS 207

Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
             +++D     + R   + + ++ ++ + D +I+ A  + N   ++++  G++   S D 
Sbjct: 208 PSLFEDLK---AERAKIDTDPQTDVMYV-DAEIVRADYDANKAQLSLQFSGRYRDPSEDL 263

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           +             + DIW   R++   N  W+++  +
Sbjct: 264 EEN-----------IDDIWHLERDLTTPNAPWLIVGIQ 290


>gi|218460136|ref|ZP_03500227.1| hypothetical protein RetlK5_11796 [Rhizobium etli Kim 5]
          Length = 121

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 6/121 (4%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER--GIITLG 63
           M S DF+ L F      +F QLR VLG++TGNEKP    ++ +            ++TL 
Sbjct: 1   MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60

Query: 64  K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
           +    G+ +D   +I+ +   GT LN+ +R +      F+PK+FLN AR +YE IV ++ 
Sbjct: 61  RRDATGEDEDRFAAIDAVAAPGTPLNESLRALNKADPSFNPKEFLNGARMAYEMIVMAYA 120

Query: 120 E 120
           +
Sbjct: 121 D 121


>gi|163803720|ref|ZP_02197579.1| hypothetical protein 1103602000427_AND4_04363 [Vibrio sp. AND4]
 gi|159172471|gb|EDP57338.1| hypothetical protein AND4_04363 [Vibrio sp. AND4]
          Length = 288

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 90/223 (40%), Gaps = 37/223 (16%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
           IL+   I F +F  +RG+LG K G      ++P  G  + K+            +   ++
Sbjct: 96  ILIMGLIAFVIFKLMRGMLGAKQGTMNQHRQQPAFGGNASKFEQP--------NMQNFEQ 147

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
           + N          GT       DI   Y   FD   F+N +R  Y  +  ++   ++H I
Sbjct: 148 QPN--------SAGTGGFGSKTDIPHNYPPGFDQAAFVNGSREHYRTLQGAWNHNQLHTI 199

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
           E+ V   ++ D     + R   +    + ++ + D +I+ A  + N   ++++  G++  
Sbjct: 200 EEYVSPSLFDDLK---AERAKLDGEQHTDVMYV-DAEIVRADYDANKAQLSLQFSGRYRD 255

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           +        +  D      + DIW   R++   N  W+++  +
Sbjct: 256 SV-----EGVEED------IQDIWHLERDLTVPNAPWLIVGIQ 287


>gi|28897713|ref|NP_797318.1| hypothetical protein VP0939 [Vibrio parahaemolyticus RIMD 2210633]
 gi|28805926|dbj|BAC59202.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|328473305|gb|EGF44153.1| hypothetical protein VP10329_21550 [Vibrio parahaemolyticus 10329]
          Length = 290

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 82/219 (37%), Gaps = 27/219 (12%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           IL+   I F +F  +RG+LG K G  N++     F G     ++                
Sbjct: 96  ILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNASKFEQPNMQNFEQQPNTNAGG 155

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
                    +                 FD   F+N +R  Y  +  ++   ++  IE+ V
Sbjct: 156 FTGFGAQTDVPHNYP----------PGFDQAAFINGSREHYRILQGAWNHNQLDTIEEYV 205

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              +++D     + R   E    + ++ + D +I+ A  + N   ++++  G++  A+  
Sbjct: 206 SPSLFEDLK---AERAKLEGEQHTDVMYV-DAEIVRAEYDANKAQLSLQFSGRYRDAA-- 259

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                +  D      + DIW   R++   N  W+++  +
Sbjct: 260 ---EGVEED------IEDIWHLERDLTVPNAPWLIVGIQ 289


>gi|269965560|ref|ZP_06179674.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269829785|gb|EEZ84020.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 290

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 84/217 (38%), Gaps = 23/217 (10%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F +F  +RG+LG K G+        +     SK ++  +    +    +N  
Sbjct: 96  ILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNFEQQPNTNNGG 155

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
                       N            FD   F+N +R  Y  +  ++   ++  IE+ V  
Sbjct: 156 FGGFGAQTDVPHNYP--------PGFDQAAFINGSREHYRILQGAWNHNQLETIEEYVSP 207

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            +++D     + R   +    + ++ + D +I+ A  + N   ++++  G++        
Sbjct: 208 SLFEDLK---AERAKLDGEQHTDVMYV-DAEIVRADYDANKAQLSLQFSGRYR------- 256

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
              +    E   ++ DIW   R++   N  W+++  +
Sbjct: 257 -DTVEGVEE---EIEDIWHLERDLTAPNAPWLIVGIQ 289


>gi|254507626|ref|ZP_05119759.1| import inner membrane translocase, subunit Tim44 [Vibrio
           parahaemolyticus 16]
 gi|219549513|gb|EED26505.1| import inner membrane translocase, subunit Tim44 [Vibrio
           parahaemolyticus 16]
          Length = 292

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 83/217 (38%), Gaps = 23/217 (10%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F +F  +RG+LG K G+        +      K ++  +    + ++  +  
Sbjct: 98  ILIIGLIAFVIFKLMRGMLGAKQGSMNQQRQQPAFGGSAPKFEQPNVHNFEQPQQTGSQG 157

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
                       N            FD   F+N +R  Y  +  ++   ++  IE+ V  
Sbjct: 158 GFGFGSQTDVPHNYP--------PGFDHAAFINGSREHYRILQGAWNHNQLETIEEYVSP 209

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            ++      L + ++  +  + + V   D +I+ A  + +   ++++  G++  A     
Sbjct: 210 SLF----ADLKSERAKLEGEQHTDVMYVDAEIVRADYDASKAQLSLQFSGRYRDAV---- 261

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
              I  D      + DIW   R++   N  W+++  +
Sbjct: 262 -EGIEED------IADIWHLERDLTVPNAPWLIVGIQ 291


>gi|323491921|ref|ZP_08097090.1| hypothetical protein VIBR0546_04127 [Vibrio brasiliensis LMG 20546]
 gi|323313779|gb|EGA66874.1| hypothetical protein VIBR0546_04127 [Vibrio brasiliensis LMG 20546]
          Length = 292

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 81/217 (37%), Gaps = 23/217 (10%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F +F  +RG+LG K G+        +      K ++  +    + +      
Sbjct: 98  ILIMGLIAFVIFKLMRGMLGSKQGSMNKNRQQPAFGGSAPKFEQPNVHNFEQPQSGAQGG 157

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
                       N            FD   F+N +R  Y  +  ++   ++  IE+ V  
Sbjct: 158 GFGFGAQSDIPHNYP--------PGFDQTAFINGSREHYRILQGAWNHNQLETIEEYVSP 209

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            +++D       R   E    + ++ + D +I+ A  + +   ++++  G++  +     
Sbjct: 210 SLFEDLKS---ERAKLEGEQHTDVMYV-DAEIVRADYDASKAQLSLQFSGRYRDSV---- 261

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
              I  +      + DIW   R++   N  W+++  +
Sbjct: 262 -EGIEEN------IEDIWHLERDLTTPNAPWLIVGIQ 291


>gi|260776293|ref|ZP_05885188.1| hypothetical protein VIC_001677 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607516|gb|EEX33781.1| hypothetical protein VIC_001677 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 292

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 83/217 (38%), Gaps = 23/217 (10%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   + F +F  +RG+LG K G+        +      K ++  +    +  +  +  
Sbjct: 98  ILIMGLVAFIIFKLMRGLLGSKQGSMNQQRQQPAFGGSAPKFEQPNVHNFEQQPQSGSQG 157

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
                       N            FD   F+N +R  Y  +  ++   ++  IE+ V  
Sbjct: 158 GFGFGAQSDIPHNYP--------PGFDKVAFINGSREHYRTLQGAWNHNQLDTIEEYVSP 209

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            +++D     + R   E    + ++ + D +I+ A  + +   ++++  G++  A  + +
Sbjct: 210 SLFEDLK---AERAKLEGEQHTDVMYV-DAEIVRADYDASKAQLSLQFSGRYRDAVENVE 265

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                        + DIW   R++   N  W+++  +
Sbjct: 266 EN-----------IEDIWHLERDLTVPNAPWLIVGIQ 291


>gi|262394794|ref|YP_003286648.1| hypothetical protein VEA_004023 [Vibrio sp. Ex25]
 gi|262338388|gb|ACY52183.1| hypothetical protein VEA_004023 [Vibrio sp. Ex25]
          Length = 290

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 83/217 (38%), Gaps = 23/217 (10%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F +F  +RG+LG K G+        +     SK ++  +    +    +N  
Sbjct: 96  ILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNFEQQPNTNNGG 155

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
                       N            FD   F+N +R  Y  +  ++   ++  IE+ V  
Sbjct: 156 FGGFGAQTDVPHNYP--------PGFDQAAFINGSREHYRILQGAWNHNQLETIEEYVSP 207

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            +++D     + R   +    + ++ + D +I+ A    N   ++++  G++        
Sbjct: 208 SLFEDLK---AERAKLDGEQHTDVMYV-DAEIVRADYNANKAQLSLQFSGRYR------- 256

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
              +    E   ++ DIW   R++   N  W+++  +
Sbjct: 257 -DTVEGVEE---EIEDIWHLERDLTVPNAPWLIVGIQ 289


>gi|86148689|ref|ZP_01066968.1| hypothetical protein MED222_20209 [Vibrio sp. MED222]
 gi|218710150|ref|YP_002417771.1| hypothetical protein VS_2180 [Vibrio splendidus LGP32]
 gi|85833536|gb|EAQ51715.1| hypothetical protein MED222_20209 [Vibrio sp. MED222]
 gi|218323169|emb|CAV19346.1| hypothetical protein VS_2180 [Vibrio splendidus LGP32]
          Length = 307

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 91/226 (40%), Gaps = 27/226 (11%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGN--------EKPFSGFFSGKYVFSKRDERGIITLGK 64
           IL+   I F  F  LRG+LG K G+        ++P  G          + +  +    +
Sbjct: 99  ILIMGLIAFLAFKFLRGMLGAKQGSMNQQNARGQQPAFGGMGQNKFEQPKQQPNVHNFEQ 158

Query: 65  GKKKDNLDSINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKV 123
            + +    S N     G        D+   Y   FD   F+N +R  Y  +  ++   ++
Sbjct: 159 AQPQSQPHSQNS---AGGFGFGAQSDVPHNYPPGFDQAAFINGSREHYRTLQGAWNHNEL 215

Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
           + IE+ V   +++D     + R   + +  + ++ + D +I+ A  + +   ++++  G+
Sbjct: 216 NTIEEYVSPSLFEDLK---AERNKLDGDQHTDVMYV-DAEIVRADHDGSKAQLSLQFSGR 271

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
           +     D     I  D      + DIW   R++   N  W+++  +
Sbjct: 272 Y----RDTA-DGIEED------ITDIWHLERDLTTQNAPWLIVGIQ 306


>gi|260878333|ref|ZP_05890688.1| import inner membrane translocase, subunit Tim44 [Vibrio
           parahaemolyticus AN-5034]
 gi|308092753|gb|EFO42448.1| import inner membrane translocase, subunit Tim44 [Vibrio
           parahaemolyticus AN-5034]
          Length = 287

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 81/217 (37%), Gaps = 27/217 (12%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           IL+   I F +F  +RG+LG K G  N++     F G     ++                
Sbjct: 96  ILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNASKFEQPNMQNFEQQPNTNAGG 155

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
                    +                 FD   F+N +R  Y  +  ++   ++  IE+ V
Sbjct: 156 FTGFGAQTDVPHNYP----------PGFDQAAFINGSREHYRILQGAWNHNQLDTIEEYV 205

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              +++D     + R   E    + ++ + D +I+ A  + N   ++++  G++  A+  
Sbjct: 206 SPSLFEDLK---AERAKLEGEQHTDVMYV-DAEIVRAEYDANKAQLSLQFSGRYRDAA-- 259

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
                +  D      + DIW   R++   N  W+++ 
Sbjct: 260 ---EGVEED------IEDIWHLERDLTVPNAPWLIVG 287


>gi|37679309|ref|NP_933918.1| hypothetical protein VV1125 [Vibrio vulnificus YJ016]
 gi|320156948|ref|YP_004189327.1| hypothetical protein VVM_03684 [Vibrio vulnificus MO6-24/O]
 gi|326424146|ref|NP_761953.2| hypothetical protein VV1_3163 [Vibrio vulnificus CMCP6]
 gi|37198052|dbj|BAC93889.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
 gi|319932260|gb|ADV87124.1| hypothetical protein VVMO6_02102 [Vibrio vulnificus MO6-24/O]
 gi|319999531|gb|AAO11480.2| hypothetical protein VV1_3163 [Vibrio vulnificus CMCP6]
          Length = 289

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 86/218 (39%), Gaps = 26/218 (11%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F +F  +RG+L  K G+        +      K ++  +    +        
Sbjct: 96  ILIIGLIAFVIFKLMRGLLASKQGSMNQHRQQPAFGGQAPKFEQSNVHNFEQSPNT---- 151

Query: 73  SINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
                 P G        D+   Y   FD   F+N AR  Y  +  ++   ++  IE+ V 
Sbjct: 152 ------PTGGFGFGAQSDVPHNYPPGFDQVAFVNGAREHYRILQGAWNHNQLETIEEYVS 205

Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
             +++D     + R   +    + ++ + D +I+ A  + +T +++++  G++  A    
Sbjct: 206 PSLFEDLK---AERAKLDGEQHTDVMYV-DAQIVRADYDASTAHLSLQFSGRYRDAV--- 258

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
               I  D      + DIW   R++   N  W+++  +
Sbjct: 259 --EGIEED------ITDIWHLERDLTAPNAPWMIVGIQ 288


>gi|84387756|ref|ZP_00990772.1| hypothetical protein V12B01_05945 [Vibrio splendidus 12B01]
 gi|84377439|gb|EAP94306.1| hypothetical protein V12B01_05945 [Vibrio splendidus 12B01]
          Length = 302

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 88/223 (39%), Gaps = 25/223 (11%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F  F  LRG+LG K G+        + +         G     + K++ N+ 
Sbjct: 98  ILIMGLIAFLAFKFLRGMLGAKQGS----MNQQNARGQQPAFGGMGQNKFEQPKQQPNVH 153

Query: 73  SINELFPIGTRLNKVMRDIVSVY------TDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
           +  +  P                        FD   F+N +R  Y  +  ++   +++ I
Sbjct: 154 NFEQAQPQSQGAAGGFGFGAQSDVPHNYPPGFDQAAFINGSREHYRTLQGAWNHNELNTI 213

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
           E+ V   +++D     + R   + +  + ++ + D +I+ A  + +   ++++  G++  
Sbjct: 214 EEYVSPSLFEDLK---AERNKLDGDQHTDVMYV-DAEIVRADHDGSKAQLSLQFSGRY-- 267

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
              D  + +          + DIW   R++  +N  W+++  +
Sbjct: 268 --RDTADGVEE-------DITDIWHLERDLTTNNAPWLIVGIQ 301


>gi|148977909|ref|ZP_01814462.1| hypothetical protein VSWAT3_01775 [Vibrionales bacterium SWAT-3]
 gi|145962855|gb|EDK28127.1| hypothetical protein VSWAT3_01775 [Vibrionales bacterium SWAT-3]
          Length = 304

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 85/223 (38%), Gaps = 25/223 (11%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F  F  LRG+LG K G+        + +         G     +  ++ N+ 
Sbjct: 100 ILIMGLIAFLAFKFLRGMLGAKQGS----MNQQNARGQQPAFGGMGQNKFEQPTQQPNVH 155

Query: 73  SINELFPIGTRLNKVMRDIVSVY------TDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
           +  +  P                        FD   F+N +R  Y  +  ++   ++  I
Sbjct: 156 NFEQAQPQSQGTAGGFGFGAQSDVPHNYPPGFDQAAFINGSREHYRTLQGAWNHNELSTI 215

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
           E+ V   +++D     + R   + +  + ++ + D +I+ A  + +   ++++  G++  
Sbjct: 216 EEYVSPSLFEDLK---AERSKLDGDQHTDVMYV-DAEIVRADHDGSKAQLSLQFSGRY-- 269

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
              D     I  D      + DIW   R++   N  W+++  +
Sbjct: 270 --RDSA-EGIEED------ITDIWHLERDLTTDNAPWLIVGIQ 303


>gi|323499402|ref|ZP_08104378.1| hypothetical protein VISI1226_21579 [Vibrio sinaloensis DSM 21326]
 gi|323315587|gb|EGA68622.1| hypothetical protein VISI1226_21579 [Vibrio sinaloensis DSM 21326]
          Length = 292

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 84/217 (38%), Gaps = 23/217 (10%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F +F  +RG+LG K G+        +     + + E+  +   +  +  +  
Sbjct: 98  ILIIGLIAFLIFKLMRGMLGAKQGSMNQHRQQPAFGGQSAPKFEQPNVHNFEQPQTGSQG 157

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
                       N            FD   F+N +R  Y  +  ++   ++  IE+ V  
Sbjct: 158 GFGFGGQTDVPHNYP--------PGFDHAAFINGSREHYRILQGAWNHNQLETIEEYVSP 209

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            +Y+D     + R   +    + ++ + D +I+ A  + +   ++++  G++  A     
Sbjct: 210 SLYEDLK---AERAKLDGEQHTDVMYV-DAEIVRADYDASKAQLSLQFSGRYRDA----- 260

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
              +    E    + DIW   R++   N  W+++  +
Sbjct: 261 ---VEGVEEN---IEDIWHLERDLTTPNAPWLIVGIQ 291


>gi|261210612|ref|ZP_05924905.1| hypothetical protein VCJ_000865 [Vibrio sp. RC341]
 gi|260840397|gb|EEX66968.1| hypothetical protein VCJ_000865 [Vibrio sp. RC341]
          Length = 289

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 87/219 (39%), Gaps = 28/219 (12%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F +F  +RG+L  K G+          +  F   +           ++ N+ 
Sbjct: 96  ILIMGLIAFVIFKLMRGLLASKQGS----MNQSQQQPAFGGMNRTPF-------EQPNVH 144

Query: 73  SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           +  +   +G       + DI   Y   FD   F+N AR  Y  +  ++   ++  I + V
Sbjct: 145 NFEQPQSMGGGFGSAAQSDIPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 204

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              ++ D    L   ++N +  + + V   D +I+ A  + N   ++++  G++  A   
Sbjct: 205 SPSLFDD----LKAERANYEGEQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 258

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                I  +      + D+W   R++   N  W+++  +
Sbjct: 259 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 288


>gi|302773644|ref|XP_002970239.1| hypothetical protein SELMODRAFT_441105 [Selaginella moellendorffii]
 gi|300161755|gb|EFJ28369.1| hypothetical protein SELMODRAFT_441105 [Selaginella moellendorffii]
          Length = 257

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 9/149 (6%)

Query: 88  MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
           +  +   +  ++ K F  EA + Y+ I      G +  + +LV    +    + +  R++
Sbjct: 105 LAKLRKKHKGYNQKVFYREATDLYKEINKLSAAGDLGKLRRLVTEHFFSVIKNQIKQRQA 164

Query: 148 NEKNVKSSLVG-IDDMK--------IINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
               V   +VG I  M+        I    ++   V IT+RI    I A+YDK+N +I  
Sbjct: 165 AYSRVHWEMVGQIKLMRTLQGRLIGIDRKDLDNAFVQITLRIQSNQIFAAYDKNNNIIKG 224

Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
           D E    V DIW F +++   +  W L  
Sbjct: 225 DLEKPLLVEDIWIFEKHLTRPDSTWRLCG 253


>gi|258626499|ref|ZP_05721339.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258581210|gb|EEW06119.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 290

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 88/219 (40%), Gaps = 28/219 (12%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F +F  +RG+L  K G+          +  +S  +           ++ N+ 
Sbjct: 97  ILIMGLIAFVIFKLMRGLLASKQGS----MNQSQQQPAYSGMNRTSF-------EQPNVH 145

Query: 73  SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           +  +   +G       + D+   Y   FD   F+N AR  Y  +  ++   ++  I + V
Sbjct: 146 NFEQPQSMGGGFGSAAQSDVPHNYPVGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 205

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              +++D        ++N +  + + V   D +I+ A  + N   ++++  G++  A   
Sbjct: 206 SPSLFEDLQAE----RANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 259

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                I  +      + D+W   R++   N  W+++  +
Sbjct: 260 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 289


>gi|258621272|ref|ZP_05716306.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|262171047|ref|ZP_06038725.1| hypothetical protein VII_001862 [Vibrio mimicus MB-451]
 gi|258586660|gb|EEW11375.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|261892123|gb|EEY38109.1| hypothetical protein VII_001862 [Vibrio mimicus MB-451]
          Length = 290

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 88/219 (40%), Gaps = 28/219 (12%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F +F  +RG+L  K G+          +  +S  +           ++ N+ 
Sbjct: 97  ILIMGLIAFVIFKLMRGLLASKQGS----MNQSQQQPAYSGMNRTSF-------EQPNVH 145

Query: 73  SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           +  +   +G       + D+   Y   FD   F+N AR  Y  +  ++   ++  I + V
Sbjct: 146 NFEQPQSMGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 205

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              +++D        ++N +  + + V   D +I+ A  + N   ++++  G++  A   
Sbjct: 206 SPSLFEDLQAE----RANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 259

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                I  +      + D+W   R++   N  W+++  +
Sbjct: 260 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 289


>gi|262166075|ref|ZP_06033812.1| hypothetical protein VMA_002525 [Vibrio mimicus VM223]
 gi|262025791|gb|EEY44459.1| hypothetical protein VMA_002525 [Vibrio mimicus VM223]
          Length = 290

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 88/219 (40%), Gaps = 28/219 (12%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F +F  +RG+L  K G+          +  +S  +           ++ N+ 
Sbjct: 97  ILIMGLIAFVIFKLMRGLLASKQGS----MNQSQQQPAYSGMNRTSF-------EQPNVH 145

Query: 73  SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           +  +   +G       + D+   Y   FD   F+N AR  Y  +  ++   ++  I + V
Sbjct: 146 NFEQPQSMGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 205

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              +++D        ++N +  + + V   D +I+ A  + N   ++++  G++  A   
Sbjct: 206 SPSLFEDLQAE----RANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 259

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                I  +      + D+W   R++   N  W+++  +
Sbjct: 260 ---EGIEEN------IEDVWHLERDLTVQNAPWLIVGIQ 289


>gi|302793266|ref|XP_002978398.1| hypothetical protein SELMODRAFT_418250 [Selaginella moellendorffii]
 gi|300153747|gb|EFJ20384.1| hypothetical protein SELMODRAFT_418250 [Selaginella moellendorffii]
          Length = 260

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 9/149 (6%)

Query: 88  MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
           +  +   +  ++ K F  EA + Y+ I      G +  + +LV    +    + +  R++
Sbjct: 108 LAKLRKKHKGYNQKVFYREATDLYKEINKLSAAGDLGKLRRLVTEHFFSVIKNQIKQRQA 167

Query: 148 NEKNVKSSLVG-IDDMK--------IINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
               V   +VG I  M+        I    ++   V IT+RI    I A+YDK+N +I  
Sbjct: 168 AYSRVHWEMVGQIKLMRTLQGRLIGIDRKDLDNAFVQITLRIQSNQIFAAYDKNNNIIKG 227

Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
           D E    V DIW F +++   +  W L  
Sbjct: 228 DLEKPLLVEDIWIFEKHLTRPDSTWRLCG 256


>gi|229515345|ref|ZP_04404805.1| hypothetical protein VCB_003002 [Vibrio cholerae TMA 21]
 gi|229348050|gb|EEO13009.1| hypothetical protein VCB_003002 [Vibrio cholerae TMA 21]
          Length = 291

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 87/219 (39%), Gaps = 28/219 (12%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F +F  +R  L  K G+          +  +S  +           ++ N+ 
Sbjct: 98  ILIMGLIAFVIFKLMRAFLASKQGS----INQSQQQPAYSGMNRTPF-------EQPNVH 146

Query: 73  SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           +  +   +G       + D+   Y   FD   F+N AR  Y  +  ++   ++  I + V
Sbjct: 147 NFEQPQSVGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 206

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              +++D    L   ++N +  + + V   D +I+ A  + N   ++++  G++  A   
Sbjct: 207 SPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 260

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                I  +      + D+W   R++   N  W+++  +
Sbjct: 261 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 290


>gi|312882412|ref|ZP_07742153.1| hypothetical protein VIBC2010_18049 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369812|gb|EFP97323.1| hypothetical protein VIBC2010_18049 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 281

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 25/219 (11%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           IL+   I F +F  +R +LG K G  N+      F G     ++         +    + 
Sbjct: 85  ILIMGIIAFVIFKLVRAMLGAKQGSLNQHRQQPAFGGSASKFEQPNVNQFKEQQQPTTNQ 144

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
                         N            FD   F+N +R  Y  +  ++   ++  IE+ V
Sbjct: 145 TGGFGFSAQSDVPHNYP--------PGFDNAAFVNGSREHYRLLQGAWNHNQLDTIEEYV 196

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              ++ D       R        +  V   D +I+ A  + +   ++++  G++      
Sbjct: 197 SQSLFDDLKT---ERAKLSGEQHTD-VMFVDAEIVRADYDASKAQLSLQFSGRYRDTV-- 250

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                I  D      + DIW   R++   N  W+++  +
Sbjct: 251 ---EGIEED------ITDIWHLERDLTTPNAPWLIVGIQ 280


>gi|262404319|ref|ZP_06080874.1| hypothetical protein VOA_002310 [Vibrio sp. RC586]
 gi|262349351|gb|EEY98489.1| hypothetical protein VOA_002310 [Vibrio sp. RC586]
          Length = 290

 Score =  124 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 87/219 (39%), Gaps = 28/219 (12%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F +F  +RG+L  K G+          +  +S  +           ++ N+ 
Sbjct: 97  ILIMGLIAFVIFKLMRGLLASKQGS----MNHSQQQPAYSGMNRTSF-------EQPNVH 145

Query: 73  SINELFPIGTRLNK-VMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           +  +   +G         D+   Y   FD   F+N AR  Y  +  ++   ++  I + V
Sbjct: 146 NFEQPQSMGGGFGSTAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 205

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              +++D    L   ++N    + + V   D +I+ A  + N   ++++  G++  A   
Sbjct: 206 SPSLFED----LKAERANYAGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 259

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                I  +      + D+W   R++   N  W+++  +
Sbjct: 260 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 289


>gi|229529012|ref|ZP_04418402.1| hypothetical protein VCG_002105 [Vibrio cholerae 12129(1)]
 gi|229332786|gb|EEN98272.1| hypothetical protein VCG_002105 [Vibrio cholerae 12129(1)]
          Length = 291

 Score =  124 bits (312), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 87/219 (39%), Gaps = 28/219 (12%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F +F  +R  L  K G+          +  +S  +           ++ N+ 
Sbjct: 98  ILIMGLIAFVIFKLMRAFLASKQGS----LNQSQQQPAYSGMNRTPF-------EQPNVH 146

Query: 73  SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           +  +   +G       + D+   Y   FD   F+N AR  Y  +  ++   ++  I + V
Sbjct: 147 NFEQPQSMGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 206

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              +++D    L   ++N +  + + V   D +I+ A  + N   ++++  G++  A   
Sbjct: 207 SPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 260

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                I  +      + D+W   R++   N  W+++  +
Sbjct: 261 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 290


>gi|229521878|ref|ZP_04411295.1| hypothetical protein VIF_002420 [Vibrio cholerae TM 11079-80]
 gi|229340803|gb|EEO05808.1| hypothetical protein VIF_002420 [Vibrio cholerae TM 11079-80]
          Length = 291

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 87/219 (39%), Gaps = 28/219 (12%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F +F  +R  L  K G+          +  +S  +           ++ N+ 
Sbjct: 98  ILIMGLIAFVIFKLMRAFLASKQGS----INQSQQQPAYSGMNRTPF-------EQPNVH 146

Query: 73  SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           +  +   +G       + D+   Y   FD   F+N AR  Y  +  ++   ++  I + V
Sbjct: 147 NFEQPQSMGGGFGSAAQSDVPHNYPVGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 206

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              +++D    L   ++N +  + + V   D +I+ A  + N   ++++  G++  A   
Sbjct: 207 SPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 260

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                I  +      + D+W   R++   N  W+++  +
Sbjct: 261 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 290


>gi|254286893|ref|ZP_04961845.1| hypothetical protein A33_1875 [Vibrio cholerae AM-19226]
 gi|150423043|gb|EDN14992.1| hypothetical protein A33_1875 [Vibrio cholerae AM-19226]
          Length = 291

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 87/219 (39%), Gaps = 28/219 (12%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F +F  +R  L  K G+          +  +S  +           ++ N+ 
Sbjct: 98  ILIMGLIAFVIFKLMRAFLASKQGS----INQSQQQPAYSGMNRTPF-------EQPNVH 146

Query: 73  SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           +  +   +G       + D+   Y   FD   F+N AR  Y  +  ++   ++  I + V
Sbjct: 147 NFEQPQSMGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 206

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              +++D    L   ++N +  + + V   D +I+ A  + N   ++++  G++  A   
Sbjct: 207 SPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 260

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                I  +      + D+W   R++   N  W+++  +
Sbjct: 261 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 290


>gi|15641966|ref|NP_231598.1| hypothetical protein VC1964 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121590647|ref|ZP_01677981.1| hypothetical protein VC274080_2004 [Vibrio cholerae 2740-80]
 gi|121728634|ref|ZP_01681653.1| hypothetical protein VCV52_1929 [Vibrio cholerae V52]
 gi|147674189|ref|YP_001217491.1| hypothetical protein VC0395_A1550 [Vibrio cholerae O395]
 gi|153217402|ref|ZP_01951153.1| hypothetical protein A55_2172 [Vibrio cholerae 1587]
 gi|153801838|ref|ZP_01956424.1| hypothetical protein A51_B2032 [Vibrio cholerae MZO-3]
 gi|153822436|ref|ZP_01975103.1| hypothetical protein A5E_2262 [Vibrio cholerae B33]
 gi|229507945|ref|ZP_04397450.1| hypothetical protein VCF_003177 [Vibrio cholerae BX 330286]
 gi|229511819|ref|ZP_04401298.1| hypothetical protein VCE_003228 [Vibrio cholerae B33]
 gi|229518956|ref|ZP_04408399.1| hypothetical protein VCC_002983 [Vibrio cholerae RC9]
 gi|229523980|ref|ZP_04413385.1| hypothetical protein VCA_001559 [Vibrio cholerae bv. albensis
           VL426]
 gi|229607490|ref|YP_002878138.1| hypothetical protein VCD_002402 [Vibrio cholerae MJ-1236]
 gi|254226808|ref|ZP_04920380.1| hypothetical protein VCV51_1323 [Vibrio cholerae V51]
 gi|254849050|ref|ZP_05238400.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255745285|ref|ZP_05419234.1| hypothetical protein VCH_001631 [Vibrio cholera CIRS 101]
 gi|262156009|ref|ZP_06029129.1| hypothetical protein VIG_001228 [Vibrio cholerae INDRE 91/1]
 gi|262167916|ref|ZP_06035616.1| hypothetical protein VIJ_001090 [Vibrio cholerae RC27]
 gi|297579473|ref|ZP_06941401.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|9656503|gb|AAF95112.1| hypothetical protein VC_1964 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547490|gb|EAX57596.1| hypothetical protein VC274080_2004 [Vibrio cholerae 2740-80]
 gi|121629097|gb|EAX61542.1| hypothetical protein VCV52_1929 [Vibrio cholerae V52]
 gi|124113586|gb|EAY32406.1| hypothetical protein A55_2172 [Vibrio cholerae 1587]
 gi|124122610|gb|EAY41353.1| hypothetical protein A51_B2032 [Vibrio cholerae MZO-3]
 gi|125620655|gb|EAZ49017.1| hypothetical protein VCV51_1323 [Vibrio cholerae V51]
 gi|126520012|gb|EAZ77235.1| hypothetical protein A5E_2262 [Vibrio cholerae B33]
 gi|146316072|gb|ABQ20611.1| hypothetical protein VC0395_A1550 [Vibrio cholerae O395]
 gi|227013861|gb|ACP10071.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229337561|gb|EEO02578.1| hypothetical protein VCA_001559 [Vibrio cholerae bv. albensis
           VL426]
 gi|229343645|gb|EEO08620.1| hypothetical protein VCC_002983 [Vibrio cholerae RC9]
 gi|229351784|gb|EEO16725.1| hypothetical protein VCE_003228 [Vibrio cholerae B33]
 gi|229355450|gb|EEO20371.1| hypothetical protein VCF_003177 [Vibrio cholerae BX 330286]
 gi|229370145|gb|ACQ60568.1| hypothetical protein VCD_002402 [Vibrio cholerae MJ-1236]
 gi|254844755|gb|EET23169.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255737115|gb|EET92511.1| hypothetical protein VCH_001631 [Vibrio cholera CIRS 101]
 gi|262023643|gb|EEY42344.1| hypothetical protein VIJ_001090 [Vibrio cholerae RC27]
 gi|262030187|gb|EEY48831.1| hypothetical protein VIG_001228 [Vibrio cholerae INDRE 91/1]
 gi|297537067|gb|EFH75900.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 291

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 87/219 (39%), Gaps = 28/219 (12%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F +F  +R  L  K G+          +  +S  +           ++ N+ 
Sbjct: 98  ILIMGLIAFVIFKLMRAFLASKQGS----INQSQQQPAYSGMNRTPF-------EQPNVH 146

Query: 73  SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           +  +   +G       + D+   Y   FD   F+N AR  Y  +  ++   ++  I + V
Sbjct: 147 NFEQPQSMGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 206

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              +++D    L   ++N +  + + V   D +I+ A  + N   ++++  G++  A   
Sbjct: 207 SPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 260

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                I  +      + D+W   R++   N  W+++  +
Sbjct: 261 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 290


>gi|262276258|ref|ZP_06054067.1| hypothetical protein VHA_003243 [Grimontia hollisae CIP 101886]
 gi|262220066|gb|EEY71382.1| hypothetical protein VHA_003243 [Grimontia hollisae CIP 101886]
          Length = 295

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 83/218 (38%), Gaps = 24/218 (11%)

Query: 14  LLFAFITFFVFLQLRGVLGKKTGN-EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           L+ A I F +F   + ++  K G+  +P    ++G     K+        G   ++    
Sbjct: 101 LIIALIAFVLFKIFKSLMAAKNGSINRPHQQAYAGNPSPQKK--------GYYHEQPQFR 152

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
                   G           +   +FD   F+N AR  Y  +  ++   ++  I++ V  
Sbjct: 153 ESAATSSTGGFGAVNNDVPFNFPPNFDMSAFVNGAREHYRTLQGAWNHNELETIQEYVTP 212

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            +Y D       R+  +    + ++ + D +I+ A  +     ++++  G++     D+ 
Sbjct: 213 ELYNDLA---EERRKLDGEQHTEVMYV-DAEIVRADYDGKRAQLSLQFSGRY----CDRH 264

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
              I  D      + DIW   R++   N  W+++  + 
Sbjct: 265 -EGIEED------ITDIWHLERDMTLPNAPWLIVGIQA 295


>gi|327484501|gb|AEA78908.1| hypothetical protein VCLMA_A1705 [Vibrio cholerae LMA3894-4]
          Length = 291

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 87/219 (39%), Gaps = 28/219 (12%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F +F  +R  L  K G+          +  +S  +           ++ N+ 
Sbjct: 98  ILIMGLIAFVIFKLMRAFLASKQGS----INQSQQQPAYSGMNRTPF-------EQPNVH 146

Query: 73  SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           +  +   +G       + D+   Y   FD   F+N AR  Y  +  ++   ++  I + V
Sbjct: 147 NFEQPQSMGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 206

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              +++D    L   ++N +  + + V   D +I+ A  + N   ++++  G++  A   
Sbjct: 207 SPSLFED----LKAERANYEGDQHTNVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 260

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                I  +      + D+W   R++   N  W+++  +
Sbjct: 261 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 290


>gi|59712270|ref|YP_205046.1| Tim44-like domain-contain protein [Vibrio fischeri ES114]
 gi|59480371|gb|AAW86158.1| Tim44-like domain family [Vibrio fischeri ES114]
          Length = 297

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 85/219 (38%), Gaps = 20/219 (9%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+ A I F +F   R ++  K G+     G         +  +       +  + D   
Sbjct: 98  ILIMAGIAFILFKVFRSMMAAKAGSMNQRQGAAYAGPQGQQDAQPSFRDNQQYFQADQAT 157

Query: 73  SINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
           +     P G        D+   Y   FD + F+N +R  Y  +  ++   ++  I++ V 
Sbjct: 158 A----QPTGGFGAASADDVPHNYPPGFDMQAFINGSREHYRILQGAWNHNQLETIQEYVS 213

Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
             +Y D    +  R + E    + ++ + D +++ A  + N   ++++  G++  A    
Sbjct: 214 ISLYNDL---VQERATLEGEQHTDVMYV-DAEVVRADYDANRAQLSLQFSGRYRDAV--- 266

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
               I  D      + DIW   R++   N  W++I  + 
Sbjct: 267 --EGIEED------ITDIWHLERDLTQPNAPWLIIGIQA 297


>gi|153826379|ref|ZP_01979046.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|149739857|gb|EDM54048.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
          Length = 223

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 87/219 (39%), Gaps = 28/219 (12%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F +F  +R  L  K G+          +  +S  +           ++ N+ 
Sbjct: 30  ILIMGLIAFVIFKLMRAFLASKQGS----INQSQQQPAYSGMNRTPF-------EQPNVH 78

Query: 73  SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           +  +   +G       + D+   Y   FD   F+N AR  Y  +  ++   ++  I + V
Sbjct: 79  NFEQPQSMGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 138

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              +++D    L   ++N +  + + V   D +I+ A  + N   ++++  G++  A   
Sbjct: 139 SPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 192

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                I  +      + D+W   R++   N  W+++  +
Sbjct: 193 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 222


>gi|153820281|ref|ZP_01972948.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126509172|gb|EAZ71766.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
          Length = 239

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 87/219 (39%), Gaps = 28/219 (12%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F +F  +R  L  K G+          +  +S  +           ++ N+ 
Sbjct: 46  ILIMGLIAFVIFKLMRAFLASKQGS----INQSQQQPAYSGMNRTPF-------EQPNVH 94

Query: 73  SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           +  +   +G       + D+   Y   FD   F+N AR  Y  +  ++   ++  I + V
Sbjct: 95  NFEQPQSMGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 154

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              +++D    L   ++N +  + + V   D +I+ A  + N   ++++  G++  A   
Sbjct: 155 SPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 208

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                I  +      + D+W   R++   N  W+++  +
Sbjct: 209 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 238


>gi|197334926|ref|YP_002156484.1| import inner membrane translocase, subunit Tim44 [Vibrio fischeri
           MJ11]
 gi|197316416|gb|ACH65863.1| import inner membrane translocase, subunit Tim44 [Vibrio fischeri
           MJ11]
          Length = 297

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 84/219 (38%), Gaps = 20/219 (9%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+ A I F +F   R ++  K G+     G         +  +       +  + D   
Sbjct: 98  ILIMAGIAFILFKVFRSMMAAKAGSMNQRQGAAYAGPQGQQDAQPSFRDNQQYFQADQAT 157

Query: 73  SINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
                 P G        D+   Y   FD + F+N +R  Y  +  ++   ++  I++ V 
Sbjct: 158 ----TQPTGGFGAASADDVPHNYPPGFDMQSFINGSREHYRILQGAWNHNQLETIQEYVS 213

Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
             +Y D    +  R + E    + ++ + D +++ A  + N   ++++  G++  A    
Sbjct: 214 ISLYNDL---VQERATLEGEQHTDVMYV-DAEVVRADHDANRAQLSLQFSGRYRDAV--- 266

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
               I  D      + DIW   R++   N  W++I  + 
Sbjct: 267 --EGIEED------ITDIWHLERDLTQPNAPWLIIGIQA 297


>gi|269961023|ref|ZP_06175392.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834242|gb|EEZ88332.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 303

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 32/222 (14%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
           IL+   I F +F  +RG+LG K G      ++P  G  + K+                  
Sbjct: 108 ILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNFEQQPNNTNAG 167

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
                      P                  FD   F+N +R  Y  +  ++   ++H IE
Sbjct: 168 GFGGFGAQTDIPHNYP------------PGFDQAAFINGSREHYRILQGAWNHNQLHTIE 215

Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
           + V   +++D     + R   +    + ++ + D +I+ A  + N   ++++  G++  A
Sbjct: 216 EYVSPSLFEDLK---AERAKLDGEQHTDVMYV-DAEIVRADYDANKAQLSLQFSGRYRDA 271

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                         I   + DIW   R++   N  W+++  +
Sbjct: 272 E-----------EGIEEDIEDIWHLERDLTVPNAPWLIVGIQ 302


>gi|156973734|ref|YP_001444641.1| hypothetical protein VIBHAR_01439 [Vibrio harveyi ATCC BAA-1116]
 gi|156525328|gb|ABU70414.1| hypothetical protein VIBHAR_01439 [Vibrio harveyi ATCC BAA-1116]
          Length = 290

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 88/225 (39%), Gaps = 39/225 (17%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFSKR---DERGIITLGK 64
           IL+   I F +F  +RG+LG K G      ++P  G  + K+        +++     G 
Sbjct: 96  ILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNFEQQPNTNAGG 155

Query: 65  GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
                +   I   +P                  FD   F+N +R  Y  +  ++   ++H
Sbjct: 156 FGGFGSQTDIPHNYP----------------PGFDQAAFINGSREHYRILQGAWNHNQLH 199

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
            IE+ V   +++D     + R   +    + ++ + D +I+ A  + +   ++++  G++
Sbjct: 200 TIEEYVSPSLFEDLK---AERAKLDGEQHTDVMYV-DAEIVRADYDASKAQLSLQFSGRY 255

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
             A              I   + DIW   R++   N  W+++  +
Sbjct: 256 RDAE-----------EGIEEDIEDIWHLERDLTVPNAPWLIVGIQ 289


>gi|90410802|ref|ZP_01218817.1| hypothetical protein P3TCK_27197 [Photobacterium profundum 3TCK]
 gi|90328433|gb|EAS44731.1| hypothetical protein P3TCK_27197 [Photobacterium profundum 3TCK]
          Length = 300

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 85/222 (38%), Gaps = 33/222 (14%)

Query: 13  ILLFAFITFFVFLQL----RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
           IL+F  I  FV  +L    RG  G  TG+ +      S +   + +  +    +    ++
Sbjct: 108 ILIFGLIA-FVIFKLFKTMRGAKGTPTGH-REAYAGNSPQQQNNTQQRQQASEMNAAPQQ 165

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
               S +   P                 +F+   FL+ AR+ Y  +  ++   ++  I +
Sbjct: 166 SGYASTDSDVPFNLP------------PNFNMNAFLSGARDHYRILQGAWNHNELDKIRE 213

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
            V   +  D     + R   E    + ++ + D +++ A  + N   ++I+  G++    
Sbjct: 214 YVSPALLADLT---AERAKLEGEQHTEVMYV-DTEMVRADFDANLAQLSIQFSGRY---- 265

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            D++        E    + D+W   R++   N  W+++  + 
Sbjct: 266 KDRNE-------EHEADITDVWHLERDLRTPNAPWLIVGIQA 300


>gi|54309778|ref|YP_130798.1| hypothetical protein PBPRA2617 [Photobacterium profundum SS9]
 gi|46914216|emb|CAG20996.1| conserved hypothetical protein [Photobacterium profundum SS9]
          Length = 289

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 85/222 (38%), Gaps = 33/222 (14%)

Query: 13  ILLFAFITFFVFLQL----RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
           IL+F  I  FV  +L    RG  G  TG+ +      S +   + +  +    +    ++
Sbjct: 97  ILIFGLIA-FVIFKLFKTMRGAKGTPTGH-REAYAGNSPQQQNNTQQRQQAPEMNAAPQQ 154

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
               S +   P                 +F+   FL+ AR+ Y  +  ++   ++  I +
Sbjct: 155 SGYASTDSDVPFNLP------------PNFNMNAFLSGARDHYRILQGAWNHNELDKIRE 202

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
            V   +  D     + R   E    + ++ + D +++ A  + N   ++I+  G++    
Sbjct: 203 YVSPALLADLT---AERAKLEGEQHTEVMYV-DTEMVRADFDANLAQLSIQFSGRY---- 254

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            D++        E    + D+W   R++   N  W+++  + 
Sbjct: 255 KDRNE-------EHEADITDVWHLERDLRTPNAPWLIVGIQA 289


>gi|117923796|ref|YP_864413.1| import inner membrane translocase, subunit Tim44 [Magnetococcus sp.
           MC-1]
 gi|117607552|gb|ABK43007.1| import inner membrane translocase, subunit Tim44 [Magnetococcus sp.
           MC-1]
          Length = 331

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 86/217 (39%), Gaps = 5/217 (2%)

Query: 20  TFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT----LGKGKKKDNLDSIN 75
              VF  ++  +G +   ++       G Y    ++    +     + +G    +   + 
Sbjct: 116 AAGVFFLVKRFMGTRPPADEAAYARSHGAYRPQPQEMDQPMQREMHMPQGLPMGSGSDVE 175

Query: 76  ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
           +      R  + +  +++  ++FD   F++ A+  +E +  S+    +  ++ L+  ++ 
Sbjct: 176 DFSAQDER-QQTLDRLLAEDSNFDEFTFIDGAKRCFEMLQTSWSTFDMTTLQGLLTPQMM 234

Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
           ++  +     ++N +      V   +  ++ A  E+   Y+T+R     +    D    +
Sbjct: 235 EEVENHARQLQANGQRDVVKNVHFSEAALVEAWSEQGQDYLTVRFDVSLVEYVEDASGQV 294

Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           +S D     +V + W F R     NPNW L + +  +
Sbjct: 295 VSGDANHPQQVQEFWVFTRAQGARNPNWQLSAIQQAQ 331


>gi|330446574|ref|ZP_08310226.1| tim44-like domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490765|dbj|GAA04723.1| tim44-like domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 290

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 83/222 (37%), Gaps = 32/222 (14%)

Query: 13  ILLFAFITFFVFLQL----RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
           IL+   I  FV  +L    R   G   G+ + ++G    +    ++  R         + 
Sbjct: 97  ILIIGVIA-FVLFKLFKAMRANKGTPMGHRESYAGNSPQQPQQPQQQYRQAAGAQSQPQN 155

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
              +S +   P                 +F+   FL+ +R+ Y  I  ++   ++  I +
Sbjct: 156 GGFESTDSDVPFNLP------------PNFNMNAFLSGSRDHYRIIQGAWNHNELEKIRE 203

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
            V   ++ D     + R        + ++ + D +++ A  + NT  ++I+  G++  + 
Sbjct: 204 YVSPALFADLE---AERAKLSGEQHTEVMYV-DAELVRADYDANTAQLSIKFSGRYKDSV 259

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                  +  D      + D+W   R++   N  W+++  + 
Sbjct: 260 -----EGVEED------ITDVWHLERDLKTPNAPWLIVGIQA 290


>gi|269102148|ref|ZP_06154845.1| hypothetical protein VDA_001568 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162046|gb|EEZ40542.1| hypothetical protein VDA_001568 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 272

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 82/221 (37%), Gaps = 35/221 (15%)

Query: 13  ILLFAFITFFVFLQLRGVL---GKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
           IL+   I F +F  L+G+    G   G+ + ++G    +    +   R            
Sbjct: 84  ILIIGVIAFVIFKLLKGMRANKGTPMGHREAYAGNSPQQRNQQQAQFRQAANGASTGFSP 143

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
           + D +    P                 +F+   FLN +R  Y  I +++ +  +  I + 
Sbjct: 144 DSD-VPFNLP----------------PNFNLNAFLNGSREHYRTIQEAWNKNDLAKIREY 186

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V   +  D    ++ R        + ++ + D +++ A  + N   ++I+  G++     
Sbjct: 187 VSPALLNDL---MAERAKLNGEQHTEVMYV-DAEVVRADYDANMAQLSIQFSGRY----K 238

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D     +  D      + D+W   R++   N  W+++  + 
Sbjct: 239 DSH-EGVEED------ITDVWHLERDLRTPNAPWLIVGIQA 272


>gi|260773108|ref|ZP_05882024.1| hypothetical protein VIB_001575 [Vibrio metschnikovii CIP 69.14]
 gi|260612247|gb|EEX37450.1| hypothetical protein VIB_001575 [Vibrio metschnikovii CIP 69.14]
          Length = 289

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 87/218 (39%), Gaps = 29/218 (13%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+F  I F +F   R  L  K G+  P    ++              +  +  +++   
Sbjct: 99  ILIFGLIGFALFKLARHFLAGKQGSLNPRQPAYNTNVHRQ--------SFEQAPEQE--- 147

Query: 73  SINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
              +        + +  D+   Y   FD   F+N +R  Y  +  ++   ++  IE+ V 
Sbjct: 148 --FKPAASSGFGSTMHNDVPHNYPPGFDKIAFINGSREHYRILQGAWNHNQLETIEEYVS 205

Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
             ++ D     + R+  ++  ++ ++ + D +I+ A  ++    ++++  G+        
Sbjct: 206 QSLFSDLK---AEREKLDQQPQTEVMYV-DAEIVRADYDDRKAQLSLQFTGRCRDL---- 257

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                  D E   +++DIW   R++   N  W+++  +
Sbjct: 258 ------GD-ETEEEILDIWHLERDLTQPNAPWLIVGIQ 288


>gi|153002504|ref|YP_001368185.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
           OS185]
 gi|151367122|gb|ABS10122.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
           OS185]
          Length = 287

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 85/221 (38%), Gaps = 30/221 (13%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---SKRDERGIITLGKGKKKD 69
           IL+   + F +F  +R V+  KTG ++  +   +G+       ++ E+    +      +
Sbjct: 94  ILIIGLLAFVIFKIVRTVMASKTGAQQRPAYAGAGQPNPNMQRQQTEQTGFAINTNSGSN 153

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
                    P                  FD   FL  AR+ Y+ +  ++ E  +  I++ 
Sbjct: 154 GFGQATSAVPFDLPA------------GFDLPGFLEGARSHYKTLQLAWNENDLSKIQEY 201

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V   +Y + ++    R+      + + V   D +++ A+   N   ++++  G++     
Sbjct: 202 VSIDLYNELSN--QRRELVGD--QHTEVMFLDAELVRATHNANLAEVSVKFSGRYRDTV- 256

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                 +  D      + +IW   RN+  +N  W+++  + 
Sbjct: 257 ----EGVEED------IKEIWHLERNVTQANSPWLIVGIEQ 287


>gi|90579259|ref|ZP_01235069.1| hypothetical protein VAS14_06118 [Vibrio angustum S14]
 gi|90440092|gb|EAS65273.1| hypothetical protein VAS14_06118 [Vibrio angustum S14]
          Length = 291

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 84/223 (37%), Gaps = 33/223 (14%)

Query: 13  ILLFAFITFFVFLQL----RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL-GKGKK 67
           IL+   I  FV  +L    R   G   G+ + ++G    +     + +    T      +
Sbjct: 97  ILIIGVIA-FVLFKLFKAMRANKGTPMGHRESYAGNSPRQQPQQAQQQYRQATGSQSQPQ 155

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
               +S +   P                 +F+   FL+ +R+ Y  I  ++   ++  I+
Sbjct: 156 NGGFESTDSDVPFNLP------------PNFNMNAFLSGSRDHYRIIQGAWNHNELAKIK 203

Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
           + V   ++ D     + R        + ++ + D +++ A  + N+  ++I+  G++   
Sbjct: 204 EYVSPALFADLQ---AERAKLSGEQHTEVMYV-DAELVRADYDANSAQLSIKFSGRY--- 256

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             D     I  D      + D+W   R++   N  W+++  + 
Sbjct: 257 -KDTQ-EGIEED------INDVWHLERDLKTPNAPWLIVGIQA 291


>gi|89073249|ref|ZP_01159779.1| hypothetical protein SKA34_19790 [Photobacterium sp. SKA34]
 gi|89050959|gb|EAR56423.1| hypothetical protein SKA34_19790 [Photobacterium sp. SKA34]
          Length = 291

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 85/222 (38%), Gaps = 31/222 (13%)

Query: 13  ILLFAFITFFVFLQLRGVL---GKKTGNEKPFSGFFSGKYVFSKRDERGIITL-GKGKKK 68
           IL+   I F +F   + +    G   G+ + ++G    +     + +    T      + 
Sbjct: 97  ILIIGVIAFVLFKLFKAMRTNKGTSMGHRESYAGNSPRQQPQQAQQQYRQATGSQSQPQN 156

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
              +S +   P                 +F+   FL+ +R+ Y  I  ++   ++  I++
Sbjct: 157 GGFESTDSDVPFNLP------------PNFNMNSFLSGSRDHYRIIQGAWNHNELAKIKE 204

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
            V S ++ D     + R        + ++ + D +++ A  + N+  ++I+  G++    
Sbjct: 205 YVSSALFADLQ---AERAKLSGEQHTEVMYV-DAELVRADYDANSAQLSIQFSGRY---- 256

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            D     I  D      + D+W   R++   N  W+++  + 
Sbjct: 257 KDSQ-EGIEED------INDVWHLERDLKTPNAPWLIVGIQA 291


>gi|209694565|ref|YP_002262493.1| putative transport protein [Aliivibrio salmonicida LFI1238]
 gi|208008516|emb|CAQ78689.1| putative transport protein [Aliivibrio salmonicida LFI1238]
          Length = 316

 Score =  111 bits (278), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 84/219 (38%), Gaps = 18/219 (8%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           I++ A + F +F   R  +  K G+     G        S  ++       +  + D   
Sbjct: 115 IIIMAGVAFVLFKLFRMFMASKAGSINQRQGAAYAGPQASHDEKPSFRDNQQYFQGDQAQ 174

Query: 73  SINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
              +    G   +    ++   Y   FD + F+N +R  Y  +  ++   ++  I++ V 
Sbjct: 175 PQTQT--TGGFGSIGSDEVPHNYPPGFDLQGFINGSREHYRILQGAWNHNQLETIQEYVS 232

Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
             +Y D        ++N +  + + V   D +++ A    ++  ++++  G++     D 
Sbjct: 233 ISLYNDLVQE----RANLEGEQHTDVMFVDAEVVRAEHNASSAQLSLQFSGRY----RDS 284

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
               +    E    + D+W   R++   N  W++I  + 
Sbjct: 285 ----VEGLQE---DITDVWHLERDLTQPNAPWLIIGIQA 316


>gi|146294690|ref|YP_001185114.1| import inner membrane translocase subunit Tim44 [Shewanella
           putrefaciens CN-32]
 gi|145566380|gb|ABP77315.1| import inner membrane translocase, subunit Tim44 [Shewanella
           putrefaciens CN-32]
 gi|319427926|gb|ADV56000.1| import inner membrane translocase subunit Tim44 [Shewanella
           putrefaciens 200]
          Length = 291

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 87/219 (39%), Gaps = 22/219 (10%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFS-KRDERGIITLGKGKKKDNL 71
           IL+   + F +F  +R V+  K G +   +   +G+   + +R +            +  
Sbjct: 94  ILIIGLLAFVLFKIVRTVMASKAGAQPRPAYAGAGQPSPNLQRQQTEQTGFASNATNNAN 153

Query: 72  DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
              + +    + +   +         FD   FL  AR+ Y+ +  ++ E  +  I++ V 
Sbjct: 154 SGSHGVAQAASDVPFNLPA------GFDLPSFLEGARSHYKTLQLAWNENDLSKIQEYVS 207

Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
             ++ + ++    R+   +  + + V   D +++ A+   N   ++++  G++       
Sbjct: 208 IELFNELSN--QRRELVGE--QHTEVMFLDAELVRATHTANLAEVSVKFSGRYRDTV--- 260

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
               +  D      + ++W   RN+  +N  W+++  + 
Sbjct: 261 --ECVEED------IKEVWHLERNVAQANSPWLIVGIEQ 291


>gi|304412224|ref|ZP_07393833.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
           OS183]
 gi|307306968|ref|ZP_07586708.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
           BA175]
 gi|304349490|gb|EFM13899.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
           OS183]
 gi|306910546|gb|EFN40976.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
           BA175]
          Length = 287

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 87/220 (39%), Gaps = 28/220 (12%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   + F +F  +R V+  K G ++  +   +G+   + +           +++    
Sbjct: 94  ILIIGLLAFVLFKIVRTVMASKAGAQQRPAYAGAGQPNPNMQ-----------RQQAEQT 142

Query: 73  SINELFPIGTR-LNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
                   G+    +    +       FD   FL  AR+ Y+ +  ++ E  +  I++ V
Sbjct: 143 GFATNANSGSNGFGQATSAVPFDLPAGFDLPGFLEGARSHYKTLQLAWNENDLSKIQEYV 202

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              +Y + ++    R+      + + V   D +++ A+   N   ++++  G++      
Sbjct: 203 SIDLYNELSN--QRRELVGD--QHTEVMFLDAELVRATHNANLAEVSVKFSGRYR----- 253

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                +    E   ++ +IW   RN+  +N  W+++  + 
Sbjct: 254 ---DTVEGVEE---EIKEIWHLERNVTQANSPWLIVGIEQ 287


>gi|304311556|ref|YP_003811154.1| hypothetical protein HDN1F_19260 [gamma proteobacterium HdN1]
 gi|301797289|emb|CBL45509.1| Hypothetical protein HDN1F_19260 [gamma proteobacterium HdN1]
          Length = 324

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 76/228 (33%), Gaps = 25/228 (10%)

Query: 13  ILLFAFITFFVFLQLR---------GVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
           IL+FA + F +F  LR          + G   G         + +   +         +G
Sbjct: 111 ILIFALLGFVIFKLLRRRQQQRATPAMAGAGGGRFDVPEPANAPQERRTFDLGNPDEKVG 170

Query: 64  KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGK 122
                    S +      T        +       FD   FL  AR  Y  I +++ +G 
Sbjct: 171 AAAASAPAFSPSAAAATDTLGWGNETSVPFNLPAGFDMNSFLTGAREHYRTIQEAWNKGN 230

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
           +  + + +   ++   +   + R + +    +  V   D +++ A        +++R  G
Sbjct: 231 LETLREYLAPELFDALS---AERATLKGEQHTE-VMFVDAELVRADQNATLAEVSLRFSG 286

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           ++   +            +    + D+W   R++   +  W+++  + 
Sbjct: 287 RYRDQT--------EGVEDA---ITDVWHLERDLSKPDQPWLIVGIEE 323


>gi|217975072|ref|YP_002359823.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
           OS223]
 gi|217500207|gb|ACK48400.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
           OS223]
          Length = 287

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 87/220 (39%), Gaps = 28/220 (12%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   + F +F  +R V+  K G ++  +   +G+   + +           +++    
Sbjct: 94  ILIIGLLAFVLFKIVRTVMASKAGAQQRPAYAGAGQPNPNMQ-----------RQQAEQT 142

Query: 73  SINELFPIGTR-LNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
                   G+    +    +       FD   FL  AR+ Y+ +  ++ E  +  I++ V
Sbjct: 143 GFATNANSGSNGFGQAKSAVPFDLPAGFDLPGFLEGARSHYKTLQLAWNENDLIKIQEYV 202

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              +Y + ++    R+      + + V   D +++ A+   N   ++++  G++      
Sbjct: 203 SIELYNELSN--QRRELVGD--QHTEVMFLDAELVRATHNANLAEVSVKFSGRYR----- 253

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                +    E   ++ +IW   RN+  +N  W+++  + 
Sbjct: 254 ---DTVEGVEE---EIKEIWHLERNVTQANSPWLIVGIEQ 287


>gi|160877221|ref|YP_001556537.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
           OS195]
 gi|160862743|gb|ABX51277.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
           OS195]
 gi|315269425|gb|ADT96278.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
           OS678]
          Length = 287

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 83/221 (37%), Gaps = 30/221 (13%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---SKRDERGIITLGKGKKKD 69
           IL+   + F +F  +R V+  K G ++  +   +G+       ++ E+           +
Sbjct: 94  ILIIGLLAFVLFKIVRTVMASKAGAQQRPAYAGAGQPNPNMQRQQTEQTGFATNTNSGSN 153

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
                    P                  FD   FL  AR+ Y+ +  ++ E  +  I++ 
Sbjct: 154 GFGQATSAVPFDLPA------------GFDLPSFLEGARSHYKTLQLAWNENDLSKIQEY 201

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V   +Y + ++    R+      + + V   D +++ A+   N   ++++  G++     
Sbjct: 202 VSIELYNELSN--QRRELVGD--QHTEVMFLDAELVRATHNANLAEVSVKFSGRYRDTV- 256

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                 +  D      + +IW   RN+  +N  W+++  + 
Sbjct: 257 ----EGVEED------IKEIWHLERNVTQANSPWLIVGVEQ 287


>gi|126176210|ref|YP_001052359.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
           OS155]
 gi|125999415|gb|ABN63490.1| import inner membrane translocase, subunit Tim44 [Shewanella
           baltica OS155]
          Length = 287

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 85/220 (38%), Gaps = 28/220 (12%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   + F +F  +R V+  K G ++  +   +G+   + +           +++    
Sbjct: 94  ILIIGLLAFVLFKIVRTVMASKAGAQQRPAYAGAGQPNPNMQ-----------RQQAEQT 142

Query: 73  SINELFPIGTR-LNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
                   G+    +    +       FD   FL  AR+ Y+ +  ++ E  +  I++ V
Sbjct: 143 GFATNANSGSNGFGQATSAVPFDLPAGFDLPGFLEGARSHYKTLQLAWNENDLRKIQEYV 202

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              +Y + ++    R+      + + V   D +++ A+   N   ++++  G++      
Sbjct: 203 SIDLYNELSN--QRRELVGD--QHTEVMFLDAELVRATHNANLAEVSVKFSGRYRDTV-- 256

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                +  D      + +IW   RN+   N  W+++  + 
Sbjct: 257 ---EGVEED------IKEIWHLERNVTQVNSPWLIVGIEQ 287


>gi|24375821|ref|NP_719864.1| hypothetical protein SO_4340 [Shewanella oneidensis MR-1]
 gi|24350775|gb|AAN57308.1|AE015867_7 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 291

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 84/218 (38%), Gaps = 24/218 (11%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+ A + F +F  +R V+  K   +      ++G    +   +R            N  
Sbjct: 98  ILIIALLAFVLFKIVRTVMASKASAQ--PRPAYAGAGQPNPNLQRQQAEQTGFASSAN-S 154

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
             N      + +   +         FD   FL  AR+ Y+ +  ++ E  +  I++ V  
Sbjct: 155 GSNGFAQAASTVPFHLPA------GFDLPGFLEGARSHYKTLQVAWNENDLSKIQEYVSI 208

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            +Y + ++    R+   +  + + V   D +++ A+   N   ++++  G++        
Sbjct: 209 ELYNELSN--QRRELVGE--QHTEVMFLDAELVRATHNANLAEVSVKFSGRYRDTV---- 260

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
              +  D      + +IW   RN+  +N  W+++  + 
Sbjct: 261 -EGVEED------IKEIWHLERNLTQANAPWLIVGIEQ 291


>gi|120600531|ref|YP_965105.1| import inner membrane translocase subunit Tim44 [Shewanella sp.
           W3-18-1]
 gi|120560624|gb|ABM26551.1| import inner membrane translocase, subunit Tim44 [Shewanella sp.
           W3-18-1]
          Length = 291

 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 88/220 (40%), Gaps = 24/220 (10%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   + F +F  +R V+  K G +   +   +G+   + + +       + ++     
Sbjct: 94  ILIIGLLAFVLFKIVRTVMASKAGAQPRPAYAGAGQPNPNFQRQ-------QAEQTGFAS 146

Query: 73  SINELFPIGT-RLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           +       G+    +   D+       FD   FL  AR+ Y+ +  ++ E  +  I++ V
Sbjct: 147 NATNNANSGSHGFAQAASDVPFNLPAGFDLPGFLEGARSHYKTLQLAWNENDLSKIQEYV 206

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              ++ + ++    R+      + + V   D +++ A+   N   ++++  G++      
Sbjct: 207 SIELFNELSN--QRRELVGD--QHTEVMFLDAELVRATHTANLAEVSVKFSGRYRDTV-- 260

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                +  D      + ++W   RN+  +N  W+++  + 
Sbjct: 261 ---EGVEED------IKEVWHLERNVAQANSPWLIVGIEQ 291


>gi|119776251|ref|YP_928991.1| hypothetical protein Sama_3119 [Shewanella amazonensis SB2B]
 gi|119768751|gb|ABM01322.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 295

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 81/224 (36%), Gaps = 34/224 (15%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           I++ A + F +F  +R +               S      +    G         +D   
Sbjct: 100 IVIIALLAFVLFKVIRML-------------MASKAQAQPRPAYSGAGQASTAPGQDLYR 146

Query: 73  SINELFPIGT-RLNKVMRDIVSV-----YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
              E    G    N       S         FD   FL  AR  Y+ +  ++ EG ++ I
Sbjct: 147 QQAEPAAFGGLGGNSGFAQPQSTVPFQLPPGFDLAAFLEGARGHYKTLQQAWNEGDLNKI 206

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
           ++ V   ++ + +     R+  E    + ++ + D +++ A+       ++++  G++  
Sbjct: 207 QEYVSIELFNELSQ---QRRELEGQQHTEVMFL-DAELVRATYNNELAEVSVKFSGRYRD 262

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           A+       +  D      + ++W   RN+  +N  W+++  + 
Sbjct: 263 AA-----EGVEED------IKEVWHLERNLLQANSPWLIVGIQQ 295


>gi|218680118|ref|ZP_03528015.1| import inner membrane translocase subunit Tim44 [Rhizobium etli
           CIAT 894]
          Length = 78

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 44/72 (61%)

Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN 220
             +I +A  + +   IT+RI+ Q ISA+YDK ++LI  D E   +V D+WTF R+    +
Sbjct: 6   KAEITHAETKGSEAQITVRIISQLISATYDKADVLIEGDAENVAEVNDLWTFARDTRSRD 65

Query: 221 PNWVLISTKLGE 232
           PNW L++T+   
Sbjct: 66  PNWKLVATESEH 77


>gi|78223134|ref|YP_384881.1| import inner membrane translocase subunit Tim44 [Geobacter
           metallireducens GS-15]
 gi|78194389|gb|ABB32156.1| import inner membrane translocase, subunit Tim44 [Geobacter
           metallireducens GS-15]
          Length = 322

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 70/180 (38%), Gaps = 3/180 (1%)

Query: 52  SKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY 111
           +++  R   ++    ++       +  P+    +  +  +  +   FD   F   A++ +
Sbjct: 146 AQQTWRQAESVEPPPRQYGFGQTAQAAPVD-ETSFGLAHVRQMDGSFDENRFKETAQDIF 204

Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171
             +  ++    +  +  L+   +   F   +   K+     +   + + ++ I  A  EE
Sbjct: 205 FRVQGAWTRRDLSPVADLLTPEMQVTFRQQIDELKAAGTINRLENISVREVNITEAWQEE 264

Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
              Y+T+R++   +  + D+   ++S       K  + WTF R +   NP W L + +  
Sbjct: 265 GRDYLTVRLLASILDYTTDESGKVVSGSDSAPVKFEEYWTFSRPVG-PNP-WKLSAIQQA 322


>gi|330828529|ref|YP_004391481.1| Import inner membrane translocase subunit Tim44 [Aeromonas veronii
           B565]
 gi|328803665|gb|AEB48864.1| Import inner membrane translocase, subunit Tim44 [Aeromonas veronii
           B565]
          Length = 286

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 73/210 (34%), Gaps = 32/210 (15%)

Query: 21  FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPI 80
            F+   LR   GK     +P    ++G         +         +       +  F  
Sbjct: 108 VFLIRTLRK--GK-VATPQPQQAAYAGYQPPQSAAPQQFEQSNSAPQATGFADSDVPF-- 162

Query: 81  GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
                        +   FD   FL  AR+ Y  + +++ +  +  + + V   +++    
Sbjct: 163 ------------RLPPGFDMNSFLAGARDHYRTLQEAWNKNDLEKVREYVSPELFEQLK- 209

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
             + R     +  + ++ + D +++ A    +   +++R  G+++    D+   +     
Sbjct: 210 --AERAELTGDQHTEVMYV-DTQLVRADYGSDWAQVSVRFSGRYM----DRQEQVEE--- 259

Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                + ++W   R++  +N  W ++  + 
Sbjct: 260 ----DIKEVWHLERDLAKNNAPWHIVGIEQ 285


>gi|320352867|ref|YP_004194206.1| import inner membrane translocase subunit Tim44 [Desulfobulbus
           propionicus DSM 2032]
 gi|320121369|gb|ADW16915.1| import inner membrane translocase subunit Tim44 [Desulfobulbus
           propionicus DSM 2032]
          Length = 313

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 75/225 (33%), Gaps = 12/225 (5%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
           G   +L+   + +F++ +            +P +   SG       +             
Sbjct: 99  GILPLLILGGVGYFLYKRFVN---------RPAAPSSSGYQPPPAPNMFQGGGGQFAGNT 149

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
                          + + + +I +    FD K FL  A + +  I   +    + +   
Sbjct: 150 VPPVPPIPPIRATNTMEQGLAEIRATDPGFDDKYFLEVASDVFFKIQAGWMRRDLSSYRH 209

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
           L+  ++  ++    +  +   +  K   + +  ++II A  +    ++T+      +  +
Sbjct: 210 LLGQQLAAEYEQHFARMQELGQINKLESIAVRKVEIIAAGSDNGEDFVTVLFTANLLDYT 269

Query: 189 YD-KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            D K   L+        K  + WT+ R +   +  W L   ++ E
Sbjct: 270 VDEKTGALVEGSMTEPIKFAEKWTWARPMRTED--WKLEGIEVVE 312


>gi|51246964|ref|YP_066848.1| hypothetical protein DP3112 [Desulfotalea psychrophila LSv54]
 gi|50878001|emb|CAG37841.1| hypothetical membrane protein [Desulfotalea psychrophila LSv54]
          Length = 274

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 83/217 (38%), Gaps = 13/217 (5%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+ A   +F+F +           ++   G     Y            +  G+  D   
Sbjct: 69  ILILAGGAYFLFRK----------FKQQSKGGKESAYTRPTATPSFGGGMNGGENTDVRP 118

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
                F   + L++ +  I +   DF+ + F+  A + +  I   +    + +   LV +
Sbjct: 119 PPAPAFAGMSDLDEGIDQIKATDQDFEKEHFIQVASDVFFQIQAGWMRRDISSYRHLVGN 178

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY-DK 191
           ++ +++    +  K+  +  K   + +  +++I A  +    ++T+R +   +  +  DK
Sbjct: 179 QLAEEYTSQFAKMKAAGRTNKLESIAVRSIEVIAAGSDGLEDFVTVRFIASLLDYTVDDK 238

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
              ++        K  + WT+ R++  +  NW L   
Sbjct: 239 TGDIVEGSNTAPVKFEEEWTWARSVKTN--NWKLEGI 273


>gi|253699913|ref|YP_003021102.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M21]
 gi|251774763|gb|ACT17344.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M21]
          Length = 318

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 74/223 (33%), Gaps = 25/223 (11%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F ILL A I  ++  ++                    +   +     G  + G  + + 
Sbjct: 114 IFEILLLAGI-GYLIYRM----------------VKKRRSEAAALQGAGSYSYGGYEPQG 156

Query: 70  NLDSINE--LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
                    L P    +   +  +  +   FD   F ++  + +  I   +    + A+ 
Sbjct: 157 AAIPAPYRVLEPSANDVATGLSHLRQMDPGFDEGRFNDQVMDHFFKIQGGWMNRDLAALS 216

Query: 128 KLVDSRVYQDFNDSLST--RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
            LV   +   F D +    R      +++  + +  ++I     E    Y+T  I    +
Sbjct: 217 PLVTEEMKGIFRDDIDRLLRDRQVNRLEN--IAVRKVEIAEVWQEAGQDYVTALIYANLL 274

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             + D++  +++       K  ++WTF R +   N  W L   
Sbjct: 275 DYTTDENGQVVAGSKTEPVKFEELWTFARPVG--NNPWRLSGI 315


>gi|237807609|ref|YP_002892049.1| import inner membrane translocase subunit Tim44 [Tolumonas auensis
           DSM 9187]
 gi|237499870|gb|ACQ92463.1| import inner membrane translocase subunit Tim44 [Tolumonas auensis
           DSM 9187]
          Length = 286

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 76/225 (33%), Gaps = 41/225 (18%)

Query: 10  DFLILLFAFITFFVFLQ-LRGVLGKKTGNEKPFSGFFSGK----YVFSKRDERGIITLGK 64
            F ILL A +  F+  + LR          KP +             +K+         +
Sbjct: 96  IFDILLMAGVA-FLAFRFLRN--------RKPATAAGPQPAYGMPYQTKQSTESAFQKPE 146

Query: 65  GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
                +     +  P                  F+  +F+  A   Y  +  ++ +    
Sbjct: 147 YAGNTSFSPATDTVPFDLP------------EGFNTAEFIKGACEHYRTLQVAWNDNDFS 194

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
            I++ V   ++      L   ++N    + + V   D +++ A  + N+  I++   G++
Sbjct: 195 KIQEYVTPELFN----ELKQERANYTGAQHTEVLYVDAELVRAERKINSAQISVLFKGRY 250

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
             +        I  D      + ++W   RN+  +N  W+++  +
Sbjct: 251 RDSV-----EGIEED------IHEVWHLERNLSSANAPWLIVGIE 284


>gi|149911555|ref|ZP_01900169.1| hypothetical protein PE36_11757 [Moritella sp. PE36]
 gi|149805400|gb|EDM65410.1| hypothetical protein PE36_11757 [Moritella sp. PE36]
          Length = 277

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 79/217 (36%), Gaps = 30/217 (13%)

Query: 14  LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73
           ++ A +  F+  +L                        S++      +    +++   D+
Sbjct: 91  IIMAGVA-FLLFRL--------------FKGMMQAKAASQQGSPQTASGPAFRQEAQPDA 135

Query: 74  INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
                  G           ++  DFD   FL+ AR+ Y+ +  ++ E  +  I++ V   
Sbjct: 136 TFNTASQGGFAGSSNDVPFNLPADFDLTSFLSGARSHYKTLQKAWNENDLETIQEYVSIE 195

Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
           +Y +       RK  E    + ++ + D++++ A    +   ++++  G++         
Sbjct: 196 LYNELR---VQRKELEGEQHTEVMFL-DVELVRAESTASLSQVSVKFNGRYR-------- 243

Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                  ++   + ++W   R++  ++  W++   + 
Sbjct: 244 ---DGHEDVEADINEVWHLERDLTQTDAPWLITGIEQ 277


>gi|117619732|ref|YP_855556.1| import inner membrane translocase, subunit Tim44 [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561139|gb|ABK38087.1| import inner membrane translocase, subunit Tim44 [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 284

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 63/185 (34%), Gaps = 16/185 (8%)

Query: 46  SGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLN 105
            GK    ++                    N   P  T           +   FD   FL 
Sbjct: 115 KGKMAAPQQQTAYAGYQPPQSAAPQQFEQNHSAPQATGFADS-DVPFRLPPGFDMNGFLA 173

Query: 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165
            AR+ Y  + +++ +  +  + + V   +++      + R        + ++ + D +++
Sbjct: 174 GARDHYRTLQEAWNKNDLEKVREYVSPELFEQLK---AERAELTGEQHTEVMYV-DTQLV 229

Query: 166 NASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
            A    +   +++R  G+++    D+   +          + ++W   RN+   N  W +
Sbjct: 230 RADYGSDWAQVSVRFSGRYM----DRQEQVEE-------DIKEVWHLERNLAKDNAPWHI 278

Query: 226 ISTKL 230
           +  + 
Sbjct: 279 VGIEQ 283


>gi|322420322|ref|YP_004199545.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M18]
 gi|320126709|gb|ADW14269.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M18]
          Length = 322

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 77/219 (35%), Gaps = 13/219 (5%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F I+L A I  ++  ++  V  +++  E P     +G          G  +  + ++  
Sbjct: 114 LFDIVLLAGI-CYLIYRM--VKKRRS--ETPLQSVSTGYGSQ------GYDSPQQYQENS 162

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
              S     P    +   +  +  +   FD   F +   +++  I   +    + A+  L
Sbjct: 163 IPASYRVDEPPQADIYTGISHLRQMDPGFDEARFKDLVMDNFFRIQGGWMNRDLQALSAL 222

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           +   +   F + +     + +  +   + +  ++      E    Y+T+ I    +  + 
Sbjct: 223 LTPEMQGVFREDIERLLRDGRVNRLENIAVRSVEFSEVWQEAGQDYVTVLIYANLLDYTT 282

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           D+   +++       K  + WTF R +   N  W L   
Sbjct: 283 DEQGTVVAGSKTEPVKFEEHWTFTRPVG--NNPWRLSGI 319


>gi|307634800|gb|ADN78334.1| transport protein, Tim44-like domain, putative [Geobacter
           sulfurreducens KN400]
          Length = 321

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 71/190 (37%), Gaps = 3/190 (1%)

Query: 42  SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPK 101
           +         + R            ++       E  P     +  +  +  +   F  +
Sbjct: 135 ASRRREAAATAGRAPDWSREEPVTPQQYRYGQPAESVPAAGA-DSGLAHVRQMDGSFSEE 193

Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDD 161
            F   A++ +  +  ++    + +  +++   + +     ++  K+  +  +   + +  
Sbjct: 194 QFRQLAQDVFFRVQGAWTRRDLSSAREVLAPEMERALQGDVAELKARGQVNRLENIAVRQ 253

Query: 162 MKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP 221
           ++++ A  EE + +IT+R +   +  + D++  ++S       K  + WTF R +   NP
Sbjct: 254 VELVEAWQEEGSDFITVRFLANLLDYTTDEEGRVLSGSDREPVKFEEFWTFTRPVG-PNP 312

Query: 222 NWVLISTKLG 231
            W L + +  
Sbjct: 313 -WKLSAIQQA 321


>gi|39996193|ref|NP_952144.1| putative lipoprotein [Geobacter sulfurreducens PCA]
 gi|39982958|gb|AAR34417.1| lipoprotein, putative [Geobacter sulfurreducens PCA]
          Length = 321

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 71/193 (36%), Gaps = 3/193 (1%)

Query: 39  KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF 98
           +  +         + R            ++       E  P     +  +  +  +   F
Sbjct: 132 RFVASRRREAAATAGRAPDWSREEPVTPQQYRYGQPAESVPAAGA-DSGLAHVRQMDGSF 190

Query: 99  DPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG 158
             + F   A++ +  +  ++    + +  +++   + +     ++  K+  +  +   + 
Sbjct: 191 SEEQFRQLAQDVFFRVQGAWTRRDLSSAREVLAPEMERALQGDVAELKARGQVNRLENIA 250

Query: 159 IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP 218
           +  ++++ A  EE   +IT+R +   +  + D++  ++S       K  + WTF R +  
Sbjct: 251 VRQVELVEAWQEEGCDFITVRFLANLLDYTTDEEGRVLSGSDREPVKFEEFWTFTRPVG- 309

Query: 219 SNPNWVLISTKLG 231
            NP W L + +  
Sbjct: 310 PNP-WKLSAIQQA 321


>gi|145300179|ref|YP_001143020.1| import inner membrane translocase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852951|gb|ABO91272.1| predicted import inner membrane translocase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 280

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/188 (11%), Positives = 65/188 (34%), Gaps = 16/188 (8%)

Query: 44  FFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIV-SVYTDFDPKD 102
           F + +   +   +      G            +             D+   +   FD   
Sbjct: 107 FRAMRKSKAPSPQPQTAYAGYQPPSATPQQFEQSSSASQATGFADSDVPFRLPPGFDMNS 166

Query: 103 FLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDM 162
           FL+ AR+ Y  + +++    +  + + V   +++      + R        + ++ + D 
Sbjct: 167 FLSGARDHYRTLQEAWNTNDLEKVREYVSPELFEQLK---AERAELTGEQHTEVMYV-DT 222

Query: 163 KIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222
           +++ A    +   +++R  G+++    D+   +          + ++W   RN+   N  
Sbjct: 223 QLVRADYGSDWAQVSVRFSGRYM----DRQEQVEE-------DIKEVWHLERNLAKDNAP 271

Query: 223 WVLISTKL 230
           W ++  + 
Sbjct: 272 WHIVGIEQ 279


>gi|298498003|ref|ZP_07007810.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|297542336|gb|EFH78386.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 272

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 74/179 (41%), Gaps = 17/179 (9%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F +F  +R  L  K G+          +  +S  +           ++ N+ 
Sbjct: 98  ILIMGLIAFVIFKLMRAFLASKQGS----INQSQQQPAYSGMNRTPF-------EQPNVH 146

Query: 73  SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           +  +   +G       + D+   Y   FD   F+N AR  Y  +  ++   ++  I + V
Sbjct: 147 NFEQPQSMGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 206

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
              +++D    L   ++N +  + + V   D +I+ A  + N   ++++  G++++ S 
Sbjct: 207 SPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYVTLSK 261


>gi|114332328|ref|YP_748550.1| import inner membrane translocase, subunit Tim44 [Nitrosomonas
           eutropha C91]
 gi|114309342|gb|ABI60585.1| import inner membrane translocase, subunit Tim44 [Nitrosomonas
           eutropha C91]
          Length = 304

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 75/223 (33%), Gaps = 20/223 (8%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
               IL+ A I   +F  +R +  +++       G  +    +S       +      ++
Sbjct: 97  NMMDILVLAGIAAAIFFGIRMM--RRSS----GGGQAARPMQYSGAGAGHSMGGMPFPRQ 150

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
           D       +       +    D + +   FD   FL  A+ S+  +  +   G +  I  
Sbjct: 151 DTATPSGGVASGVGGQSAANTDALDIPAGFDVDSFLKNAKGSFITLQLAHDSGDLEEIRA 210

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
                ++ + +  ++ R       + + V   +  +++ + ++N    ++R  G+     
Sbjct: 211 FTTPELFAEISKQITER---GNVTQQTDVTHVNAALLDITTQDNHAVASVRFTGELR--- 264

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
                    +         +IW   +++  S+  W+L   +  
Sbjct: 265 --------EAPGAQLEPFDEIWHVEKDLVASDSAWLLSGIQQA 299


>gi|270005995|gb|EFA02443.1| hypothetical protein TcasGA2_TC008130 [Tribolium castaneum]
          Length = 421

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 65/174 (37%), Gaps = 3/174 (1%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
           +    +        D +  I       T L++ + +I  +   FD K FL +   +    
Sbjct: 236 ESDNPVIRASRLLTDKVSDIMGGLFQKTELSETLTEICKIDPTFDTKKFLKQCETDIIPN 295

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I+++   G +  ++       +  F   +         + S ++ +D++ ++   + E  
Sbjct: 296 ILEAMTRGDLEVLKDWCHEGPFNLFAIPIKEAYKKGYKIDSKVLDVDNVDLVMGKVMEQG 355

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
             + I    Q +    D +  ++  DPE   +V  +W   R+I   +P   W L
Sbjct: 356 PVLIISFTSQQMMCVRDPNGNVVEGDPEKVMRVAYVWVLCRDISEPDPRAAWRL 409


>gi|197119310|ref|YP_002139737.1| transport protein [Geobacter bemidjiensis Bem]
 gi|197088670|gb|ACH39941.1| transport protein, Tim44-like domain, putative [Geobacter
           bemidjiensis Bem]
          Length = 318

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 77/223 (34%), Gaps = 26/223 (11%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F ILL A I  ++  ++                    +   +     G  + G  +++ 
Sbjct: 115 IFEILLLAGI-GYLIYRM-----------------VKKRRSEAALQGAGSYSYGGYEQQG 156

Query: 70  NLDSINE--LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
              S     + P    +   +  +  +   FD   F +   +++  I   +    +  + 
Sbjct: 157 ATISAPYRVIEPSYNDVATGLSHLRQMDPGFDEGRFNDLVMDNFFKIQGGWMNRDLAVLA 216

Query: 128 KLVDSRVYQDFNDSLST--RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
            LV   +   F D +    R      +++  + + +++I     E    Y+T RI    +
Sbjct: 217 PLVTEEMKGIFRDDIDRLLRDRQVNRLEN--IAVRNVEITEVWQEAGQDYVTARIYANLL 274

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             + D++  +I+       K  ++WTF R +   N  W L   
Sbjct: 275 DYTTDENGQVITGSKTEPVKFEELWTFARPVG--NNPWRLSGI 315


>gi|189236504|ref|XP_975336.2| PREDICTED: similar to mitochondrial import inner membrane
           translocase subunit tim44 [Tribolium castaneum]
          Length = 424

 Score = 98.0 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 65/174 (37%), Gaps = 3/174 (1%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
           +    +        D +  I       T L++ + +I  +   FD K FL +   +    
Sbjct: 239 ESDNPVIRASRLLTDKVSDIMGGLFQKTELSETLTEICKIDPTFDTKKFLKQCETDIIPN 298

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I+++   G +  ++       +  F   +         + S ++ +D++ ++   + E  
Sbjct: 299 ILEAMTRGDLEVLKDWCHEGPFNLFAIPIKEAYKKGYKIDSKVLDVDNVDLVMGKVMEQG 358

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
             + I    Q +    D +  ++  DPE   +V  +W   R+I   +P   W L
Sbjct: 359 PVLIISFTSQQMMCVRDPNGNVVEGDPEKVMRVAYVWVLCRDISEPDPRAAWRL 412


>gi|255641370|gb|ACU20962.1| unknown [Glycine max]
          Length = 181

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 59/154 (38%), Gaps = 9/154 (5%)

Query: 83  RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
           +L           T +    F NEA N Y+ I     +G    + K V   ++    + +
Sbjct: 17  QLKSAYAIAKLRKTGYSKNQFYNEAANMYKEINTLIAKGDKRTLRKAVTENMFSALKNEI 76

Query: 143 STRKSNEKNVKSSLVG-IDDMKIINA--------SIEENTVYITIRIVGQFISASYDKDN 193
             R++    V   +V  +  ++ + A         + +  + +T+ I+ +    +YD   
Sbjct: 77  KQRETAWSRVYWEMVEPVVKIRTLRARLIGVDRKDLNKTFIQLTLEILAKQKFEAYDSKG 136

Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
            +++ D      V DIW F +++  +   W L  
Sbjct: 137 SVVAGDKSKEVLVRDIWVFEKSMFHAGATWRLCG 170


>gi|328952110|ref|YP_004369444.1| import inner membrane translocase subunit Tim44 [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452434|gb|AEB08263.1| import inner membrane translocase subunit Tim44 [Desulfobacca
           acetoxidans DSM 11109]
          Length = 333

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 77/225 (34%), Gaps = 24/225 (10%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
           G F IL+   I       L   LG +  N +      SG           +       + 
Sbjct: 130 GLFEILIIGGI-------LY--LGYRLLNRRRQQAHQSGGGGGKTYGATLLYPEPAAPQL 180

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
              D   EL P           I  +   F+   F    ++ +  +  ++   +V ++  
Sbjct: 181 PAFDLQTELEP-----------IRRMDPSFNEATFKEMVQDVFFKLQGAWMRQEVSSMRD 229

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
           L     Y   +  L   K+  +  K   + +  ++I  A  E+   +IT+  +   +  +
Sbjct: 230 LTTPEFYDILDKELQELKAKGQINKLENIAVRQVEISEAWQEQGQDFITVGFLANLLDYT 289

Query: 189 YDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS-TKLG 231
            D   N +++       K  + WTFVR I      W L + T+ G
Sbjct: 290 VDAGTNQVLAGSDTEPVKFEEYWTFVRPIGNG--PWKLTAITQPG 332


>gi|85860629|ref|YP_462831.1| transporter [Syntrophus aciditrophicus SB]
 gi|85723720|gb|ABC78663.1| transporter [Syntrophus aciditrophicus SB]
          Length = 338

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 4/160 (2%)

Query: 71  LDSINELFPI-GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
              I ++ P  G      +  I  +   FD + F +   + +  I  ++    +  +  L
Sbjct: 177 APPIQDIPPASGYEGGGGLDAIRQMDYQFDERRFKDSVLDHFFQIQGAWAGRDMSGVRNL 236

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           +   V +       T ++ ++  K   + +  + I  A  E    +IT++     +  + 
Sbjct: 237 LTDEVCKTIQQDAETLRAKKRINKLDNIAVRSVDITEAWQEGGQDFITVKFYANLLDYTI 296

Query: 190 DKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           D+    ++S       K ++ WTF R     N  W L + 
Sbjct: 297 DEASGEVVSGSRTEPVKFVEFWTFTRPTG--NNPWRLSAV 334


>gi|30250392|ref|NP_842462.1| hypothetical protein NE2471 [Nitrosomonas europaea ATCC 19718]
 gi|30181187|emb|CAD86383.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
          Length = 304

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 78/229 (34%), Gaps = 32/229 (13%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
               IL+   I   +F  +R + G   G +             ++R  +       G   
Sbjct: 99  NMMDILVLVGIAAAIFFIIRMMRGSAGGRQ-------------TQRPMQYSGAGAGGMGG 145

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYT-----DFDPKDFLNEARNSYEAIVDSFFEGKV 123
               + +   P G   +   R   S        DFD + FL +A+ S+ A+  +   G +
Sbjct: 146 VPFPNRDTSAPAGGASSGYDRQSTSTDAPDIPADFDVESFLKQAKRSFIALQLAHDAGDL 205

Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
             I       ++ + +  ++ R +  +      V   D  +++ + + N    ++R  G+
Sbjct: 206 EEIRAYTTPDLFAEISKQVAERGNMAQQTDVIFV---DAALLDVTNQGNHAIASVRFTGE 262

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
               + +                 +IW   +++  S+  W+L   +  +
Sbjct: 263 LRD-TPNAQPEPFD----------EIWHVEKDLAASDSGWLLAGIQQAD 300


>gi|332534647|ref|ZP_08410479.1| hypothetical protein PH505_bn00240 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035927|gb|EGI72408.1| hypothetical protein PH505_bn00240 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 284

 Score = 94.6 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 78/221 (35%), Gaps = 34/221 (15%)

Query: 11  FLIL--LFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
           F +L  +      F+  +L  V    TG  +            S +            ++
Sbjct: 90  FQLLEMILLAGGLFILFKL--V----TGFLRANRAPQLASPSTSAQQNAFK---QAPIEQ 140

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
                     P G  +   +        +FD   FL  AR+ Y  +  ++       + +
Sbjct: 141 PTSTGFASSAPQGESVPFNLP------PNFDVNGFLQGARSHYHTLQTAWNNADYTTMAE 194

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
            +   +  +F    + R++  ++V++ ++ I D +++ A     +  +++R  G++    
Sbjct: 195 YLSPTLVAEFK---AEREAI-QSVETEVMFI-DAELVRADTNAQSWQVSVRFKGKYRDL- 248

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                     D +    +++IW   R +   +  W+++  +
Sbjct: 249 ---------GD-KKEEPILEIWHLERLM-SDDAPWLIVGVE 278


>gi|53804400|ref|YP_113719.1| hypothetical protein MCA1256 [Methylococcus capsulatus str. Bath]
 gi|53758161|gb|AAU92452.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
          Length = 204

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 80/230 (34%), Gaps = 33/230 (14%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
           F  ++  D  +LLFA I FF    L  +L  + G++   +                 ++ 
Sbjct: 7   FEHLNVLD--LLLFAGIGFF----LYRLLAAR-GSQPQPAAGAGYYPHSENPGGANPVSG 59

Query: 63  GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
                 D L       P  ++             DFD   FLN A+ +Y  +  ++ E  
Sbjct: 60  RPAFDTDLLSRRGGAQPAQSQPA-----------DFDTTGFLNGAKAAYRQLQAAWDERD 108

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
           +  +  L   +V+ +  D L   +++ +   + L+ + D +I+      +   + +    
Sbjct: 109 LGTLRALTTDKVFAELQDQL---RASAERHSTELLRV-DAEILEVRDRGDEREVAVLFDV 164

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
                          +  E    V ++W FVR+     P W L   +  E
Sbjct: 165 TLR-----------EAPAEEAAVVHEVWHFVRSRSSRQPTWFLDGIQQVE 203


>gi|307109340|gb|EFN57578.1| hypothetical protein CHLNCDRAFT_51139 [Chlorella variabilis]
          Length = 395

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 15/155 (9%)

Query: 88  MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK- 146
           +         F+   F  E+   Y  I     +G+  ++ +LV   V+ D    L  R+ 
Sbjct: 150 LAKCKKYVPGFNRNAFKQESLELYRDICRLLAQGERGSLRQLVTPAVFSDMKRQLKQRED 209

Query: 147 -SNEKNVKSSLVG----IDDMKIINASI--------EENTVYITIRIVGQFISASYDKDN 193
            +  +    +  G    +D++  ++  +              +T+RI      A+YDK  
Sbjct: 210 PAAGRACSGTSSGWEPTVDELTTVHGRLIMINPKDETSGFAQLTVRIPSAQRFAAYDKAG 269

Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPN-WVLIS 227
            L++ DPE    V D W F      S  N W L  
Sbjct: 270 KLVAGDPEQSIDVEDYWVFEHAFKASPANRWRLAG 304


>gi|332374284|gb|AEE62283.1| unknown [Dendroctonus ponderosae]
          Length = 422

 Score = 92.6 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 62/147 (42%), Gaps = 3/147 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ + +I  +   FD K FL +   +    I+++   G +  ++       Y  F+ 
Sbjct: 264 TELSETLTEICKIDNSFDTKRFLKQCETDIIPNILEAMTRGDLEVLKDWCHEGPYNLFSI 323

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +         ++S ++ ID++ ++   + +    + I    Q +    D +  ++  D 
Sbjct: 324 PIQEAYKKGFKIESKILDIDNVDLVMGKVMDQGPVLIISFTSQQMMVFKDVEGNVVDGDL 383

Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVL 225
           +   +V  +W   R+I  ++P   W L
Sbjct: 384 DKIMRVTHVWVLCRDITETDPRAAWRL 410


>gi|157825721|ref|YP_001493441.1| hypothetical protein A1C_03235 [Rickettsia akari str. Hartford]
 gi|157799679|gb|ABV74933.1| hypothetical protein A1C_03235 [Rickettsia akari str. Hartford]
          Length = 211

 Score = 92.2 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 84/229 (36%), Gaps = 25/229 (10%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M      +L+FA I F++  +L   LG  +  E+     + G+ V        + +  + 
Sbjct: 1   MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTRQKSYFGEPVIKDVTYSTVKSNKEE 60

Query: 66  KKKDNLDSINELFPIG-----TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
           K       I     I      T +   M  +      FDP  F+N A+ +++ I+++ ++
Sbjct: 61  KNIPTAQDIKAFKDIIVEHNITAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
                + +L+D R  + F   +    S      SS +     K     +  N ++I +  
Sbjct: 121 KDSKELSELIDKRYLEAFEKIIP---SYGDVFDSSAL---SAKYSEIYMFGNNIFIKLLF 174

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            G+           ++         + + WTF RN      +W L + +
Sbjct: 175 QGK----------NVVD----KIEDLKEEWTFTRNANTKEVDWFLSNIE 209


>gi|195108009|ref|XP_001998585.1| GI24055 [Drosophila mojavensis]
 gi|193915179|gb|EDW14046.1| GI24055 [Drosophila mojavensis]
          Length = 452

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 69/178 (38%), Gaps = 7/178 (3%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
           +    +        D +  +       T L++ M ++V +  +FD K FL++     + I
Sbjct: 267 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPNFDQKQFLHDCEK--DII 324

Query: 115 ---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171
              +++   G +  ++       Y      ++  K     + S ++ I+++++    + E
Sbjct: 325 PNVLEAIVRGDLEILKDWCFESTYNIIATPITQAKKAGLYLDSKILDIENIELAMGKVME 384

Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
               + I    Q I    D+   ++  DPE   +V  +W   R+    NP   W L+ 
Sbjct: 385 QGPVLIITFQAQQIMCVRDQKGQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 442


>gi|253701845|ref|YP_003023034.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M21]
 gi|251776695|gb|ACT19276.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M21]
          Length = 321

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 77/219 (35%), Gaps = 22/219 (10%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           ILL A I  ++  ++  V  K+    +P +  +  +          +I + + +      
Sbjct: 119 ILLLAGI-GYLIYRM--VKKKR----EPEADLYGQRP--------NVIDIDRYQAGQGTA 163

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
                 P    + + +  I  +   FD   F +   + +  I  ++    +  +  L+  
Sbjct: 164 RPLGNQPAQDEVEEGLSHIRQMDPSFDEARFNDTVMDMFFKIQGAWMNRDLSGVSALLTD 223

Query: 133 RVYQDFNDSLST--RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY- 189
            +       +    R+     +++  + + +++I  A  E    +IT  +    +  +  
Sbjct: 224 EMRAAMQGDVDQLLREKRVNRLEN--IAVRNVEISEAWQESGKDFITALVYANLLDYTTD 281

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           D    ++S       K  + WTF R +   N  W L + 
Sbjct: 282 DATGAVVSGSKTDPVKFEEYWTFTRTVG--NNPWKLSAI 318


>gi|218459911|ref|ZP_03500002.1| putative translocase transmembrane protein [Rhizobium etli Kim 5]
          Length = 59

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 37/58 (63%)

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            IT+RIV Q ISA+YDK + LI  D E   +V D+WTF R+    +PNW L++T+   
Sbjct: 1   QITVRIVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATESEH 58


>gi|148907785|gb|ABR17018.1| unknown [Picea sitchensis]
          Length = 190

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 11/139 (7%)

Query: 98  FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL- 156
           +    F  EA   Y+ I     +G   ++ +LV   +Y  F   +  R++    V   + 
Sbjct: 50  YSKPKFYEEAIQLYKEINSHLAQGDRTSLRQLVTENMYTIFKREIKQRETTWSRVHWEMI 109

Query: 157 ---VGIDDMK-----IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208
              V I  ++     +   +++   V IT+ I+     A+YD   +LI+ D ++   V D
Sbjct: 110 EPTVRIRTLRARMIAVDKNNLDNAFVQITLEILTNQKFAAYDLKGILITEDSKVL--VED 167

Query: 209 IWTFVRNIPPSNPNWVLIS 227
           IW F R++      W L  
Sbjct: 168 IWVFERSLFQPGARWRLCG 186


>gi|297808779|ref|XP_002872273.1| protein translocase [Arabidopsis lyrata subsp. lyrata]
 gi|297318110|gb|EFH48532.1| protein translocase [Arabidopsis lyrata subsp. lyrata]
          Length = 314

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 19/159 (11%)

Query: 83  RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
            L           T +    F  EA   Y+ I      G    I K V  R+Y    + +
Sbjct: 157 ELRSAYAIAKLRKTGYSKNTFYIEALELYKQINILMANGDKKTIRKNVTERMYSALKNEI 216

Query: 143 STRKS--------------NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
             R++                + +++ L+GID   +  A      + +T+  + +    +
Sbjct: 217 KQREAMWDGVYWEMIEPVVKIRTLQARLIGIDRTDLKKA-----FIQLTLEFLTKQKFEA 271

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
           YD    +++ D      V DIW F +++  +   W L  
Sbjct: 272 YDAKGNVVAGDRNKEVLVRDIWVFEKSLFHTGAYWRLCG 310


>gi|77359903|ref|YP_339478.1| hypothetical protein PSHAa0957 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874814|emb|CAI86035.1| conserved protein of unknown function; putative membrane protein
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 283

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 79/221 (35%), Gaps = 34/221 (15%)

Query: 11  FLIL--LFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
           F +L  +      F+ L+L  V G               +   S +     ++    K+ 
Sbjct: 90  FQLLEMILLAGAAFIILKL--VRG-------------FMRARQSPQLASAGMSQNAFKQA 134

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
                                   ++   FD   FL  AR  Y  + +++ E   H + +
Sbjct: 135 PIEHEQTTSTGFANSTAHGDDVPFNLPPGFDTNGFLQGAREHYHTLQNAWNEADYHTMAE 194

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
            +   +  +F    + R++   +V + ++ I D +++ A    +   +++R  G++   +
Sbjct: 195 YLSPELVAEFK---AEREAI-TSVATEVMFI-DAELVRADTLTDKWQVSVRFKGKYRDLA 249

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            DK    I          ++IW   R +  ++  W+++  +
Sbjct: 250 -DKQEQPI----------LEIWHLER-LTLTDAPWLIVGVE 278


>gi|157133678|ref|XP_001662961.1| mitochondrial import inner membrane translocase subunit tim44
           [Aedes aegypti]
 gi|108870735|gb|EAT34960.1| mitochondrial import inner membrane translocase subunit tim44
           [Aedes aegypti]
          Length = 433

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 65/179 (36%), Gaps = 3/179 (1%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
           +    +        D +  +       T L++ + +I  +  +FD K FL +   +    
Sbjct: 248 ESENPVIRASRLLTDKVSDVMGNLFSKTELSETLTEICKIDPNFDQKQFLRDCENDIIPN 307

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I+++   G +  ++       Y      +S  +     + S ++ I+++ +    + E  
Sbjct: 308 ILEAMIRGDLEVLKDWCFESTYNIIATPISQAQKLGYYLDSKVLDIENVDLAMGKVMEQG 367

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
             + I    Q I    D    ++  DPE   +   +W   R+    NP   W L+  + 
Sbjct: 368 PVLIITFQTQQIMCVRDSKGNVVEGDPEKVMRCNYVWVLCRDPNDLNPKSAWRLMELQA 426


>gi|157118792|ref|XP_001653263.1| mitochondrial import inner membrane translocase subunit tim44
           [Aedes aegypti]
 gi|108875602|gb|EAT39827.1| mitochondrial import inner membrane translocase subunit tim44
           [Aedes aegypti]
          Length = 433

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 65/179 (36%), Gaps = 3/179 (1%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
           +    +        D +  +       T L++ + +I  +  +FD K FL +   +    
Sbjct: 248 ESENPVIRASRLLTDKVSDVMGNLFSKTELSETLTEICKIDPNFDQKQFLRDCENDIIPN 307

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I+++   G +  ++       Y      +S  +     + S ++ I+++ +    + E  
Sbjct: 308 ILEAMIRGDLEVLKDWCFESTYNIIATPISQAQKLGYYLDSKVLDIENVDLAMGKVMEQG 367

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
             + I    Q I    D    +I  DPE   +   +W   R+    NP   W L+  + 
Sbjct: 368 PVLIITFQTQQIMCVRDSKGNVIEGDPEKVMRCNYVWVLCRDPNDLNPKSAWRLMELQA 426


>gi|116749223|ref|YP_845910.1| import inner membrane translocase subunit Tim44 [Syntrophobacter
           fumaroxidans MPOB]
 gi|116698287|gb|ABK17475.1| import inner membrane translocase, subunit Tim44 [Syntrophobacter
           fumaroxidans MPOB]
          Length = 341

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 3/155 (1%)

Query: 75  NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134
            E  P    + +  +++      F+ + F    ++ +  I   +    +  IE L+   +
Sbjct: 178 PEYLPPADDVERGFQELRRFDPGFNEESFKETVQDLFFRIQAGWMNRSLDGIEGLLAPEM 237

Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY-DKDN 193
              F       + + +  K   + +  ++      EE   Y+T+      +  +  DK  
Sbjct: 238 KAFFASEFDRLRRSGRINKLENIAVRKVEPSEVWQEEGKDYVTVLFTANLLDYTVDDKTG 297

Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            ++  D     K  + WTF R+I      W L + 
Sbjct: 298 QVVEGDKLNPVKFQEFWTFCRDIGTQ--RWQLTAI 330


>gi|148265319|ref|YP_001232025.1| import inner membrane translocase, subunit Tim44 [Geobacter
           uraniireducens Rf4]
 gi|146398819|gb|ABQ27452.1| import inner membrane translocase, subunit Tim44 [Geobacter
           uraniireducens Rf4]
          Length = 318

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 72/222 (32%), Gaps = 25/222 (11%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F ILL A I  ++  +                 F   K V S            G    
Sbjct: 116 LFEILLLAGI-GYLIYR-----------------FVKKKRVDSSYSTYEQGGYQHGNVTP 157

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
                    P  T ++  M  I  +   FD   F +   + +  I  ++    + ++  L
Sbjct: 158 IYGGTESYEPQPTDVDTGMAHIRQMDPSFDESRFNDSVMDIFFKIQGAWMNRDLSSVSGL 217

Query: 130 VDSRVYQDFNDSLST--RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
           +   + + F + +    R      +++  + + +++I     E    YIT  I    +  
Sbjct: 218 LTDEMKRIFQEDMDRLLRDKQVNRLEN--IAVRNVEISEVWQESGQDYITALIYANLLDY 275

Query: 188 SY-DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           +  D    ++S       K  + WTF R +   N  W L + 
Sbjct: 276 TTDDATGTVVSGSKTEPVKFEEYWTFTRPVG--NNPWRLSAI 315


>gi|198450930|ref|XP_001358182.2| GA11194 [Drosophila pseudoobscura pseudoobscura]
 gi|198131257|gb|EAL27319.2| GA11194 [Drosophila pseudoobscura pseudoobscura]
          Length = 458

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 61/154 (39%), Gaps = 7/154 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138
           T L++ M ++V +   FD K FL +     + I   +++   G +  ++       Y   
Sbjct: 300 TELSETMTELVKIDPAFDQKQFLRDCET--DIIPNVLEAIVRGDLEILKDWCFESTYNVI 357

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
              ++  K +   + S ++ I+D+ +    + +    + I    Q I    D    ++  
Sbjct: 358 ATPITQAKKSGLYLDSKILDIEDIDLAMGKVMDQGPVLIITFQAQQIMCVRDPKGKVVEG 417

Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
           DPE   +V  +W   R+    NP   W L+    
Sbjct: 418 DPEKVMRVAYVWVLCRDREELNPKAAWRLLEISA 451


>gi|119115002|ref|XP_310830.3| AGAP000291-PA [Anopheles gambiae str. PEST]
 gi|116130625|gb|EAA06726.3| AGAP000291-PA [Anopheles gambiae str. PEST]
          Length = 401

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 64/178 (35%), Gaps = 7/178 (3%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
           +    +        D +  I       T L++ + +I  +   FD K FL +  N  + I
Sbjct: 216 ESENPMIRASRLLTDKVSDIMGNLFSKTELSETLTEICKIDPSFDQKQFLRDCEN--DII 273

Query: 115 ---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171
              +++   G++  +        Y      ++  +     + S ++ I+++ +    + E
Sbjct: 274 PNVLEAIVRGELEVLRDWCFESTYNIIATPIAQAQKAGCRLDSKILDIENVDLAMGKVME 333

Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
               + +    Q I    D    +I  DPE   +   +W   R+    +P   W L+ 
Sbjct: 334 QGPVLIVTFQTQQIMCVRDGKGAVIEGDPEKVMRCHHVWVLCRDPNELDPKAAWRLME 391


>gi|118579223|ref|YP_900473.1| import inner membrane translocase, subunit Tim44 [Pelobacter
           propionicus DSM 2379]
 gi|118501933|gb|ABK98415.1| import inner membrane translocase, subunit Tim44 [Pelobacter
           propionicus DSM 2379]
          Length = 314

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 69/217 (31%), Gaps = 24/217 (11%)

Query: 15  LFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSI 74
           L A I  ++  +            K      +         +   +    G         
Sbjct: 116 LLAGIA-YLIYR----------FVKKKQPELAPGGYNQAGYQATSVPPPYGAAYQESQH- 163

Query: 75  NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134
                 G   +  +  I  +   FD   F + A +++  I  ++    +  +  L+   +
Sbjct: 164 -----DGQGADGGLDHIRQMDPGFDENRFNDMAMDTFFKIQGAWMNRDLAPVSTLLTDEM 218

Query: 135 YQDFNDSLST--RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY-DK 191
            + F + L    R+     +++  + +  + I  A  E    YIT  I    +  +  D 
Sbjct: 219 RRVFQEDLDGLLRERRTNRLEN--IAVRKVDISEAWQESGQDYITTLIYANLLDYTTDDA 276

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
             +++S       K  + WTF R I  +   W L + 
Sbjct: 277 SGIVVSGSKTDPVKFEEYWTFTRPIGGT--PWRLSAI 311


>gi|225451048|ref|XP_002284948.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 299

 Score = 90.3 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 9/140 (6%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
            +  + F  EA + Y+ I          ++ K V   +Y    + +  R+S    V   +
Sbjct: 156 GYSRQKFYTEAVDLYKEINSQIANSAKASLRKSVTENMYSALKNEIKQRESKWHKVYWEM 215

Query: 157 VG-IDDMKIINASI------EENTV--YITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
           V  +  ++ + A +      + N     +T+  + +    +YD    +++ D +    V 
Sbjct: 216 VEPVVKIRTLRARMISIDRNDMNKAFIQLTLEFLTKQKFEAYDSKGCVVAGDKDKEVLVR 275

Query: 208 DIWTFVRNIPPSNPNWVLIS 227
           D+W F R++      W L  
Sbjct: 276 DVWVFERSLFHPGAYWRLCG 295


>gi|195143739|ref|XP_002012855.1| GL23705 [Drosophila persimilis]
 gi|194101798|gb|EDW23841.1| GL23705 [Drosophila persimilis]
          Length = 458

 Score = 89.9 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 61/154 (39%), Gaps = 7/154 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138
           T L++ M ++V +   FD K FL +     + I   +++   G +  ++       Y   
Sbjct: 300 TELSETMTELVKIDPAFDQKQFLRDCET--DIIPNVLEAIVRGDLEILKDWCFESTYNII 357

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
              ++  K +   + S ++ I+D+ +    + +    + I    Q I    D    ++  
Sbjct: 358 ATPITQAKKSGLYLDSKILDIEDIDLAMGKVMDQGPVLIITFQAQQIMCVRDPKGKVVEG 417

Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
           DPE   +V  +W   R+    NP   W L+    
Sbjct: 418 DPEKVMRVAYVWVLCRDREELNPKAAWRLLEISA 451


>gi|170068221|ref|XP_001868783.1| mitochondrial import inner membrane translocase subunit tim44
           [Culex quinquefasciatus]
 gi|167864292|gb|EDS27675.1| mitochondrial import inner membrane translocase subunit tim44
           [Culex quinquefasciatus]
          Length = 431

 Score = 89.9 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 60/152 (39%), Gaps = 3/152 (1%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ + +I  +   FD K FL +   +    I+++   G +  ++       Y     
Sbjct: 273 TELSETLTEICKIDPSFDQKQFLRDCENDIIPNILEAMIRGDLEILKDWCFESTYNIIAT 332

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            ++  +     + S ++ I+++ +    + E    + +    Q I    D  N ++  DP
Sbjct: 333 PIAQAQKAGFFLDSKILDIENVDLAMGKVMEQGPVLIVTFQTQQIMCVRDSKNAVVEGDP 392

Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
           E   +   +W   R+    NP   W L+  + 
Sbjct: 393 EKVMRCNYVWVLCRDPNDLNPRSAWRLMELQA 424


>gi|325981336|ref|YP_004293738.1| import inner membrane translocase subunit Tim44 [Nitrosomonas sp.
           AL212]
 gi|325530855|gb|ADZ25576.1| import inner membrane translocase subunit Tim44 [Nitrosomonas sp.
           AL212]
          Length = 285

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 74/229 (32%), Gaps = 31/229 (13%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
           F  ++  D + +L      F  +++   L +K   E+  S  +SG    ++ +       
Sbjct: 87  FENINMMDIVTMLLLIGAVFFIIRM---L-RKPKVEQSPSMQYSGMNTNTRENFNTPAFT 142

Query: 63  GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
                           P                 DF  + FL  A+ S+  +  +   G 
Sbjct: 143 PSAGTTVADSQAAHRQPNIPA-------------DFKVEPFLRHAKASFMRLQAAHDHGD 189

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
           ++ I       +  + +  ++ R   ++  +   +   D  ++      +    ++R  G
Sbjct: 190 INEIRDYTTPEMLAEISAQINERGDAQQTTEIMFI---DANLLEVETAGDLAIASVRFTG 246

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           Q           L  S+PE      +IW   +++   +  W+L   +  
Sbjct: 247 QL--------KDLPDSEPEA---FDEIWHVQKDLKDPDATWLLAGIQQA 284


>gi|239947276|ref|ZP_04699029.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921552|gb|EER21576.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 211

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 85/229 (37%), Gaps = 25/229 (10%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M      +L+FA I FF+  +L   LG  +  E+     + G+ V        + +  + 
Sbjct: 1   MSPQIIELLIFAVIAFFIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSTVKSNKEE 60

Query: 66  KKKDNLDSINELFPIG-----TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
           K       I     I      T +   M  + +    FDP  F+N A+ +++ I+++ ++
Sbjct: 61  KNIPTAQDIKAFKDIIVEHNITAVVDGMEQVHNRLYSFDPVKFINNAKTAFQMIIEAAYK 120

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
                + +L+D R  ++F        S      SS +     K     +  N ++I +  
Sbjct: 121 KDTQELSELIDKRYLEEFEKITP---SYGDFFDSSAL---SAKYSEIYMFGNNIFIKLLF 174

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            G+           ++         + + WTF RN      +W L + +
Sbjct: 175 QGK----------NVVD----KIEDLKEEWTFTRNANAKEVDWFLSNIE 209


>gi|157803805|ref|YP_001492354.1| hypothetical protein A1E_03170 [Rickettsia canadensis str. McKiel]
 gi|157785068|gb|ABV73569.1| hypothetical protein A1E_03170 [Rickettsia canadensis str. McKiel]
          Length = 211

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 84/229 (36%), Gaps = 25/229 (10%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M      +L+FA I FF+  +L   LG     E+     + G+ V        + +    
Sbjct: 1   MSPQIIELLIFALIAFFIINKLITTLGSTAEEEQTKQKSYFGEPVIKDVTYSAVKSNKAE 60

Query: 66  KKKDNLDSINELFPIG-----TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
           K    ++ I     I      T +   M  +      FDP  F+N A+ +++ I+++ ++
Sbjct: 61  KNLPTVEDIKAFQDIIVEQNITAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
                + +LVD R  ++F        S      SS +     K     +  N ++I +  
Sbjct: 121 KDTQELSELVDKRYLEEFEKITP---SYGDFFDSSAL---SAKYSEIYLFGNNIFIKLLF 174

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            G+           ++         + + WTF RN      +W L + +
Sbjct: 175 QGK----------NVVD----KIEDLKEEWTFTRNANTKEVDWFLSNIE 209


>gi|298205045|emb|CBI34352.3| unnamed protein product [Vitis vinifera]
          Length = 196

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 9/140 (6%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
            +  + F  EA + Y+ I          ++ K V   +Y    + +  R+S    V   +
Sbjct: 53  GYSRQKFYTEAVDLYKEINSQIANSAKASLRKSVTENMYSALKNEIKQRESKWHKVYWEM 112

Query: 157 VG-IDDMKIINASI------EENTV--YITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
           V  +  ++ + A +      + N     +T+  + +    +YD    +++ D +    V 
Sbjct: 113 VEPVVKIRTLRARMISIDRNDMNKAFIQLTLEFLTKQKFEAYDSKGCVVAGDKDKEVLVR 172

Query: 208 DIWTFVRNIPPSNPNWVLIS 227
           D+W F R++      W L  
Sbjct: 173 DVWVFERSLFHPGAYWRLCG 192


>gi|324512642|gb|ADY45230.1| Import inner membrane translocase subunit tim-44 [Ascaris suum]
          Length = 465

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 67/171 (39%), Gaps = 8/171 (4%)

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVH 124
           +   D I  +F   + +++V+ +I  +   FD  ++L       E I   +++F  G + 
Sbjct: 292 RGVTDRITSVFTTKSEVSEVLTEIAKIDPSFDKVEWLRFCER--EVIPNVLEAFIRGDLK 349

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNE-KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
            ++     R Y      +   K        S ++ I  +++++  + +    + I     
Sbjct: 350 ILQDWCHERAYNALAAVVKEYKKVNFSTADSRVIDISKVEMVSGKMMDQGPVLIITFQAF 409

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKLGE 232
            I+   + +  ++  D     +V  +W   R++   NP   W L+   + E
Sbjct: 410 MINVVKNLEGKVVQGDENNPVRVHHVWVMCRDMEEYNPAVAWKLLEVHMQE 460


>gi|88858066|ref|ZP_01132708.1| hypothetical protein PTD2_11789 [Pseudoalteromonas tunicata D2]
 gi|88819683|gb|EAR29496.1| hypothetical protein PTD2_11789 [Pseudoalteromonas tunicata D2]
          Length = 283

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 74/217 (34%), Gaps = 37/217 (17%)

Query: 14  LLFAFITFFVFLQLRGVLGK-KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           LL A + F +F  ++ V+ K +     P  G        + +          G    + D
Sbjct: 99  LLMALLAFVIFKVVKMVMAKNRQSQPMPAGGPSINPVEQTPQYRENTT----GGFATSQD 154

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
            +    P G                FD   FL  AR+ Y  +  ++    +  IE+ V  
Sbjct: 155 HVPFNLPSG----------------FDTTAFLQGARDHYHTLQKAWNNNDLTTIEEYVSP 198

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            ++ +     + R        ++ V   D ++  A        +++R  G++     D  
Sbjct: 199 ALFNELK---AERADVADV--ATEVLFLDAELARADSSPILWEVSVRFKGKYRD-LGDTQ 252

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
             +I           ++W   R++  SN  W+++  +
Sbjct: 253 EEMI----------NEVWHLERDMRQSNAPWLIVGIE 279


>gi|156541363|ref|XP_001599273.1| PREDICTED: similar to mitochondrial import inner membrane
           translocase subunit tim44, partial [Nasonia vitripennis]
          Length = 400

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 62/180 (34%), Gaps = 7/180 (3%)

Query: 54  RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
            +    +        D +  I       T L++ + +I  +   FD   FL +     + 
Sbjct: 214 EESENPVVRASRLLTDKVSDIFGGLFQKTELSETLTEICKLDPSFDKIKFLKDCET--DI 271

Query: 114 I---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE 170
           I   +++   G +  ++       Y      L         + S ++ ID++ ++   + 
Sbjct: 272 IPNVLEAMIRGDLEILKDWCHEAPYNVIAQPLQQAFKLGYRLDSKVLDIDNVDLLMGKVM 331

Query: 171 ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIST 228
           +    + I    Q I    D    ++  DPE   +V  +W   R+    NP   W L+  
Sbjct: 332 DQGPVLAISFTSQQIMCVRDAKGNVVEGDPEKVMRVNYVWVLCRDPAELNPKSAWRLLEI 391


>gi|63093891|dbj|BAD98172.1| hypothetical protein [Drosophila parabipectinata]
          Length = 460

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 64/149 (42%), Gaps = 3/149 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ M ++V +   FD K+FL++   +    I+++   G +  ++       Y     
Sbjct: 302 TELSETMTELVKIDPSFDQKEFLHDCETDIIPNILEAIVRGDLEILKDWCFESTYNIIAT 361

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            ++  K     + S ++ I+++++    + E    + I    Q I    D+   ++  DP
Sbjct: 362 PITQAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKAQVVEGDP 421

Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
           E   +V  +W   R+    NP   W L+ 
Sbjct: 422 EKVMRVHYVWVLCRDRNELNPKAAWRLME 450


>gi|186526131|ref|NP_001119286.1| P-P-bond-hydrolysis-driven protein transmembrane transporter
           [Arabidopsis thaliana]
 gi|332006297|gb|AED93680.1| Mitochondrial inner membrane translocase complex, subunit
           Tim44-related protein [Arabidopsis thaliana]
          Length = 296

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 19/159 (11%)

Query: 83  RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
            L           T +    F  EA   Y+ I      G+   I K V  R+Y    + +
Sbjct: 139 ELRSAYAIAKLRKTGYSKNTFYIEALELYKQINIQMANGEKKTIRKNVTERMYSALKNEI 198

Query: 143 STRKS--------------NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
             R++                + +++ L+GID   +  A      + +T+  + +    +
Sbjct: 199 KQREAMWDGVYWEMVEPVVKIRTLQARLIGIDRTDLKKA-----FIQLTLEFLTKQKFEA 253

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
           YD    + + D      V DIW F +++  +   W L  
Sbjct: 254 YDAKGNVAAGDKNKEVLVRDIWVFEKSLFHTGAYWRLCG 292


>gi|326678158|ref|XP_003201001.1| PREDICTED: mitochondrial import inner membrane translocase subunit
           TIM44-like [Danio rerio]
 gi|94734038|emb|CAK04039.1| novel protein containing a Tim44-like domain (zgc:110764) [Danio
           rerio]
          Length = 452

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 67/174 (38%), Gaps = 3/174 (1%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEA 113
           +             D +  I       T +++V+ +I+ V   FD   FL +  ++    
Sbjct: 267 ESDNAFIRASRAVTDKMTDIIGGLFSKTEMSEVLTEILKVDPSFDKDSFLKQCEKDIIPN 326

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I+++  +G++  ++       Y      +   K+      S ++ ID++ +    + E  
Sbjct: 327 ILEAMIQGELDVLKDWCYEATYSQLAHPIQQAKAMGLQFHSKILDIDNIDLAMGKMMEQG 386

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN--WVL 225
             + I    Q +    +    ++  DP+   +++ +W   R+    NPN  W L
Sbjct: 387 PVLIITFQAQLVMVIRNVKGEVVEGDPDKVLRMMYVWALCRDQEELNPNAAWRL 440


>gi|301058972|ref|ZP_07199941.1| Tim44-like domain protein [delta proteobacterium NaphS2]
 gi|300446968|gb|EFK10764.1| Tim44-like domain protein [delta proteobacterium NaphS2]
          Length = 250

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 83/224 (37%), Gaps = 13/224 (5%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F IL+   + +F++ +        +G  K     FS                    +  
Sbjct: 37  LFEILIIGGLIYFLYKKF-------SGKNKSKRSLFSSPDGGGGSGGGYESISSSQYRPP 89

Query: 70  NLDS--INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
           ++ S  I ++ P+ + ++  +  +      FDP++F   A++ +  +  ++    +  ++
Sbjct: 90  DMASSGIPDMAPVNSSVDD-LDTVRHYDPGFDPENFKEFAQDVFFKVQAAWTRRDISVMK 148

Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
           + + +++  ++    +  ++  +  +   + +  + I++        ++ ++     +  
Sbjct: 149 QHLGTQLLGEYEQHFADLRAKGQENRLENIAVRSVDIVDMGEMGGEPFVIVQFRANLLDY 208

Query: 188 SYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           + D+    ++        K  + W F R+   S   W L   + 
Sbjct: 209 TVDEATGQVLEGSSSEPVKFEERWAFSRSPGSS--QWKLEGIQE 250


>gi|63093892|dbj|BAD98173.1| hypothetical protein [Drosophila parabipectinata]
          Length = 428

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 64/149 (42%), Gaps = 3/149 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ M ++V +   FD K+FL++   +    I+++   G +  ++       Y     
Sbjct: 270 TELSETMTELVKIDPSFDQKEFLHDCETDIIPNILEAIVRGDLEILKDWCFESTYNIIAT 329

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            ++  K     + S ++ I+++++    + E    + I    Q I    D+   ++  DP
Sbjct: 330 PITQAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKAQVVEGDP 389

Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
           E   +V  +W   R+    NP   W L+ 
Sbjct: 390 EKVMRVHYVWVLCRDRNELNPKAAWRLME 418


>gi|145334561|ref|NP_001078626.1| P-P-bond-hydrolysis-driven protein transmembrane transporter
           [Arabidopsis thaliana]
 gi|26451284|dbj|BAC42743.1| unknown protein [Arabidopsis thaliana]
 gi|332006296|gb|AED93679.1| Mitochondrial inner membrane translocase complex, subunit
           Tim44-related protein [Arabidopsis thaliana]
          Length = 313

 Score = 88.0 bits (217), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 19/159 (11%)

Query: 83  RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
            L           T +    F  EA   Y+ I      G+   I K V  R+Y    + +
Sbjct: 156 ELRSAYAIAKLRKTGYSKNTFYIEALELYKQINIQMANGEKKTIRKNVTERMYSALKNEI 215

Query: 143 STRKS--------------NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
             R++                + +++ L+GID   +  A      + +T+  + +    +
Sbjct: 216 KQREAMWDGVYWEMVEPVVKIRTLQARLIGIDRTDLKKA-----FIQLTLEFLTKQKFEA 270

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
           YD    + + D      V DIW F +++  +   W L  
Sbjct: 271 YDAKGNVAAGDKNKEVLVRDIWVFEKSLFHTGAYWRLCG 309


>gi|242051094|ref|XP_002463291.1| hypothetical protein SORBIDRAFT_02g041340 [Sorghum bicolor]
 gi|241926668|gb|EER99812.1| hypothetical protein SORBIDRAFT_02g041340 [Sorghum bicolor]
          Length = 158

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 59/141 (41%), Gaps = 9/141 (6%)

Query: 96  TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155
           T +  K F ++A   Y+ +      G   ++ K++  R++    + L  R+S   +V   
Sbjct: 14  TGYTKKQFYDQALKIYKEVNTLMAHGDTSSLRKILTERMHSTIKNELKRRQSMWNSVHWE 73

Query: 156 LV----GIDDMK-----IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
           LV     I  ++     +    ++++ + +T+  V +    +Y+    ++S D      V
Sbjct: 74  LVEPAVSIRTLRARMIGLDKNDLDKSFIQLTLEFVTKQKFEAYNSKGAVVSGDKSKEVLV 133

Query: 207 IDIWTFVRNIPPSNPNWVLIS 227
            DIW F R++      W +  
Sbjct: 134 KDIWVFERSLFHPGAYWRVCG 154


>gi|197117400|ref|YP_002137827.1| transport protein [Geobacter bemidjiensis Bem]
 gi|197086760|gb|ACH38031.1| transport protein, Tim44-like domain, putative [Geobacter
           bemidjiensis Bem]
          Length = 322

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 73/219 (33%), Gaps = 22/219 (10%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           ILL A I  ++  ++  V  K+    +P +  +  +          +I +   +      
Sbjct: 120 ILLLAGIA-YLIYRM--VKKKR----EPETDVYGQRP--------NVIDIDHYQVSQGSA 164

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
                      + + +  I  +   FD   F +   + +  I  ++    +  +  L   
Sbjct: 165 QSLGYQQAQDEVEEGLSHIRQMDPSFDEGRFNDAVMDMFFKIQGAWMNRDLSGVSALFTD 224

Query: 133 RVYQDFNDSLST--RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY- 189
            +       +    R      +++  + + +++I  A  E    +IT  I    +  +  
Sbjct: 225 EMRAAMQGDVDQLLRDKRVNRLEN--IAVRNVEISEAWQESGKDFITALIYANLLDYTTD 282

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           D    ++S       K  + WTF R +   N  W L + 
Sbjct: 283 DATGAVVSGSKADPVKFEEYWTFTRTVG--NNPWKLSAI 319


>gi|118581965|ref|YP_903215.1| import inner membrane translocase, subunit Tim44 [Pelobacter
           propionicus DSM 2379]
 gi|118504675|gb|ABL01158.1| import inner membrane translocase, subunit Tim44 [Pelobacter
           propionicus DSM 2379]
          Length = 317

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 70/222 (31%), Gaps = 25/222 (11%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F I+L A +  ++  +            K                +R  +       + 
Sbjct: 116 MFEIILLAGL-GYLIYR----------FIKKKRELSLATPSGQGGYQREAVAPVSYGYQA 164

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
            +       P  + +   +  +  +   FD   F +   + +  I  ++    +  +  L
Sbjct: 165 EV-------PASSDVESGISHVRQMDPTFDESSFNDAVMDIFFRIQGAWMNRDLAPVSSL 217

Query: 130 VDSRVYQDFNDSLST--RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
           +   + + F + +    R      +++  + +  ++I     E    Y+T  +       
Sbjct: 218 LTDEMKRIFQEDVDRLLRDRQVNRLEN--IAVRKVEITEVWQESGQDYVTALVHANLFDY 275

Query: 188 SY-DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           +  D    ++S       K  + WTF R++   N  W L + 
Sbjct: 276 TTDDATGAVVSGSKSEPVKFEEYWTFTRSVG--NNPWRLSAI 315


>gi|195037110|ref|XP_001990008.1| GH18477 [Drosophila grimshawi]
 gi|193894204|gb|EDV93070.1| GH18477 [Drosophila grimshawi]
          Length = 452

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 71/178 (39%), Gaps = 7/178 (3%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
           +    +        D +  +       T L++ M ++V +  +FD K+FL++     + I
Sbjct: 267 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPNFDQKEFLHDCEK--DII 324

Query: 115 ---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171
              +++   G +  ++       Y      ++  K +   + S ++ I+++++    + E
Sbjct: 325 PNVLEAIVRGDLEILKDWCFESTYNIIATPITQAKKSGLYLDSKILDIENIELAMGKVME 384

Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
               + I    Q I    D+   ++  DP+   +V  +W   R+    NP   W L+ 
Sbjct: 385 QGPVLIITFQAQQIMCVRDQKAQVVEGDPDKVMRVHYVWVLCRDRNELNPKAAWRLME 442


>gi|198435825|ref|XP_002124932.1| PREDICTED: similar to translocase of inner mitochondrial membrane
           44 homolog [Ciona intestinalis]
          Length = 431

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 69/177 (38%), Gaps = 7/177 (3%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
           +   ++  G     D +  +      GT ++KVM +I  +  +F  + FL+  R  +E I
Sbjct: 246 ESDNVLIRGSRFITDKISGVAGSLFGGTDISKVMTEIARIDPEFSAQGFLDFCR--FEII 303

Query: 115 ---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171
              +++  +G  + ++       Y      +   +      + + V +D + I  A+  +
Sbjct: 304 PNLLEAISQGNENIVKDWCSEAPYNQLMFPVKQAQQIGCRYELTTVDLDHVDIAGATKVD 363

Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN--PNWVLI 226
               + I    Q I    +K   ++  D +   KV  +W   R++   +    W +I
Sbjct: 364 QGPVLVISFQTQQIMVVRNKKGDIVEGDSDQIMKVFHVWALCRDVEEMDRRAAWKII 420


>gi|195569739|ref|XP_002102866.1| GD20131 [Drosophila simulans]
 gi|194198793|gb|EDX12369.1| GD20131 [Drosophila simulans]
          Length = 304

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 69/176 (39%), Gaps = 3/176 (1%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
           +    +        D +  +       T L++ M ++V +   FD KDFL +   +    
Sbjct: 119 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 178

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I++S   G +  ++       +    + +   K     + S ++ I+++++    + E  
Sbjct: 179 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGLYLDSKILDIENIELAMGKVMEQG 238

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
             + I    Q I    D+ + ++  DPE   +V  +W   R+    NP   W L+ 
Sbjct: 239 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 294


>gi|61806584|ref|NP_001013525.1| mitochondrial import inner membrane translocase subunit TIM44
           [Danio rerio]
 gi|60649493|gb|AAH90431.1| Translocase of inner mitochondrial membrane 44 homolog (yeast)
           [Danio rerio]
 gi|182891522|gb|AAI64677.1| Timm44 protein [Danio rerio]
          Length = 452

 Score = 87.6 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 67/174 (38%), Gaps = 3/174 (1%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEA 113
           +             D +  I       T +++V+ +I+ V   FD   FL +  ++    
Sbjct: 267 ESDNAFIRASRAVTDKMTDIIGGLFSKTEMSEVLTEILKVDPTFDKDSFLKQCEKDIIPN 326

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I+++  +G++  ++       Y      +   K+      S ++ ID++ +    + E  
Sbjct: 327 ILEAMIQGELDVLKDWCYEATYSQLAHPIQQAKAMGLQFHSKILDIDNIDLAMGKMMEQG 386

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN--WVL 225
             + I    Q +    +    ++  DPE   +++ +W   R+    NPN  W L
Sbjct: 387 PVLIITFQAQLVMVIRNVKGEVVEGDPEKVLRMMYVWALCRDQEELNPNAAWRL 440


>gi|242051390|ref|XP_002463439.1| hypothetical protein SORBIDRAFT_02g043830 [Sorghum bicolor]
 gi|241926816|gb|EER99960.1| hypothetical protein SORBIDRAFT_02g043830 [Sorghum bicolor]
          Length = 474

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 13/196 (6%)

Query: 28  RGVLG--------KKTGNE--KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINEL 77
           R VLG        K  G+   K    +        +     +    +      +  I +L
Sbjct: 245 RTVLGEKWEAFKNKIQGHPVYKRVDEYTKPVVTKGQEVAEDVRERWETSDNPVVQKIQDL 304

Query: 78  FP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134
                  T      R+I      F   DF+ + + + + ++ ++ +G V  ++K     V
Sbjct: 305 NESLLEETSAAVTFREIRQRDPSFSLSDFVADVQETIKPVLTAYSKGDVETLKKYCTKEV 364

Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNL 194
            +          S        ++ I +  ++   +  ++  I +R   Q I    D++  
Sbjct: 365 IERCKGEREAYASQGIFFDHKILHISEADVLETKMFGSSPIIILRFQTQQIYCVRDREGQ 424

Query: 195 LISSDPEIFGKVIDIW 210
           +     +    V   W
Sbjct: 425 VTEGGQDTIQTVFYSW 440


>gi|159479570|ref|XP_001697863.1| mitochondrial inner membrane translocase [Chlamydomonas
           reinhardtii]
 gi|158273961|gb|EDO99746.1| mitochondrial inner membrane translocase [Chlamydomonas
           reinhardtii]
          Length = 264

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 55/150 (36%), Gaps = 3/150 (2%)

Query: 64  KGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
           +      +  + EL      G+  ++ MR+I      FD   F+   +     +V +F +
Sbjct: 80  ETSDHPVVHKVEELKSSMFTGSEASRAMREIRVRDQAFDMNRFVQSVKLDAPVVVKAFLK 139

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
             +  + +     + + F                S++ I D++I+   + ++  +I  + 
Sbjct: 140 HDLDTLSQHCGPELMERFAGIFKHFNEQGLFEDPSILFIGDVEIVEVRLMDDDPFIIAQF 199

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIW 210
             Q +  + DK   ++  D     +V   W
Sbjct: 200 HCQQLKCTRDKFGNVVDGDANTIQRVYYFW 229


>gi|194746677|ref|XP_001955803.1| GF18940 [Drosophila ananassae]
 gi|190628840|gb|EDV44364.1| GF18940 [Drosophila ananassae]
          Length = 461

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 64/149 (42%), Gaps = 3/149 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ M ++V +   FD K+FL++   +    I+++   G +  ++       +     
Sbjct: 303 TELSETMTELVKIDPSFDQKEFLHDCETDIIPNILEAIVRGDLEILKDWCFESTFNIIAT 362

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            ++  K     + S ++ I+++++    + E    + I    Q I    D+   ++  DP
Sbjct: 363 PITQAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKAQVVEGDP 422

Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
           E   +V  +W   R+    NP   W L+ 
Sbjct: 423 EKVMRVHYVWVLCRDRNELNPKAAWRLME 451


>gi|218200130|gb|EEC82557.1| hypothetical protein OsI_27102 [Oryza sativa Indica Group]
 gi|222637566|gb|EEE67698.1| hypothetical protein OsJ_25363 [Oryza sativa Japonica Group]
          Length = 321

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 57/141 (40%), Gaps = 9/141 (6%)

Query: 96  TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155
           T +  K+F ++A   Y+ +      G   ++ K++  R++    + L  R+S   +V   
Sbjct: 177 TGYTKKEFYDQAFKIYKEVNTLMAHGDTSSLRKILTERMHSTIKNELKKRQSMWSSVHWE 236

Query: 156 LV---------GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
           LV             + +    +++  + +T+  V +    +Y+    ++S D      V
Sbjct: 237 LVEPAVCIRTLRARMIGLDKNDLDKAFIQLTLEFVTKQKFEAYNTKGEVVSGDKSKEVLV 296

Query: 207 IDIWTFVRNIPPSNPNWVLIS 227
            DIW F R++      W +  
Sbjct: 297 KDIWVFERSLFHPGAYWRVCG 317


>gi|25009742|gb|AAN71045.1| AT09326p [Drosophila melanogaster]
 gi|40882559|gb|AAR96191.1| AT24717p [Drosophila melanogaster]
          Length = 459

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 69/176 (39%), Gaps = 3/176 (1%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
           +    +        D +  +       T L++ M ++V +   FD KDFL +   +    
Sbjct: 274 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 333

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I++S   G +  ++       +    + +   K     + S ++ I+++++    + E  
Sbjct: 334 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGLYLDSKILDIENIELAMGKVMEQG 393

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
             + I    Q I    D+ + ++  DPE   +V  +W   R+    NP   W L+ 
Sbjct: 394 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 449


>gi|307199490|gb|EFN80103.1| Mitochondrial import inner membrane translocase subunit TIM44
           [Harpegnathos saltator]
          Length = 410

 Score = 87.2 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 63/174 (36%), Gaps = 3/174 (1%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
           +    +        D +  I       T L++ + +I  +  +F    FL +    +   
Sbjct: 225 ESDNAVLRASRLLTDKVTDIIGGLFQKTELSETLTEICKLDPNFSRIQFLKDCETDFIPN 284

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I+++   G +  ++       Y      L   +     + S ++ ID++ ++   + +  
Sbjct: 285 ILEAMVRGDLEILKDWCHEAPYNVIAQPLKEVQKLGYRLDSKILDIDNVDLMMGKMMDQG 344

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
             + I    Q I    +  N ++  DP+   +V  IW   R+    NP   W L
Sbjct: 345 PVLIIGFQCQQIMCVRNSKNEVVEGDPQKVMRVNYIWVLCRDRTELNPKAAWRL 398


>gi|219884429|gb|ACL52589.1| unknown [Zea mays]
          Length = 303

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 57/141 (40%), Gaps = 9/141 (6%)

Query: 96  TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155
           T +    F ++A   Y+ +      G   ++ +++  R++    + L  R+S   +V   
Sbjct: 159 TGYTKNQFYDQALKIYKEVNTLMAHGDTSSLREILTERMHSTIKNELKRRQSMWNSVHWE 218

Query: 156 LV----GIDDMK-----IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
           LV     I  ++     +    +++  + +T+  V +    +Y+    ++S D      V
Sbjct: 219 LVEPAVSIRTLRARMIGLDKNDLDKAFIQLTLEFVTKQKFEAYNSKGAVVSGDKSKEVLV 278

Query: 207 IDIWTFVRNIPPSNPNWVLIS 227
            DIW F R++      W +  
Sbjct: 279 KDIWVFERSLFHPGAYWRVCG 299


>gi|195497862|ref|XP_002096280.1| GE25149 [Drosophila yakuba]
 gi|194182381|gb|EDW95992.1| GE25149 [Drosophila yakuba]
          Length = 459

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 69/176 (39%), Gaps = 3/176 (1%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
           +    +        D +  +       T L++ M ++V +   FD KDFL +   +    
Sbjct: 274 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 333

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I++S   G +  ++       +    + +   K     + S ++ I+++++    + E  
Sbjct: 334 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGLYLDSKILDIENIELAMGKVMEQG 393

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
             + I    Q I    D+ + ++  DPE   +V  +W   R+    NP   W L+ 
Sbjct: 394 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 449


>gi|229586715|ref|YP_002845216.1| hypothetical protein RAF_ORF0564 [Rickettsia africae ESF-5]
 gi|228021765|gb|ACP53473.1| Unknown [Rickettsia africae ESF-5]
          Length = 211

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 84/229 (36%), Gaps = 25/229 (10%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M      +L+FA I F++  +L   LG  +  E+     + G+ V        + +  + 
Sbjct: 1   MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSIVKSNKEE 60

Query: 66  KKKDNLDSINELFPIG-----TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
           K       I     I      T +   M  +      FDP  F+N A+ +++ I+++ ++
Sbjct: 61  KNIPTAQDIKAFKDIIVEHNITAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
                + +L+D R  ++F        S      SS +     K     +  N ++I +  
Sbjct: 121 KDAKELSELIDKRYLEEFEKITP---SYGDFFDSSTL---SAKYSEIYMFGNNIFIKLLF 174

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            G+           ++         + + WTF RN      +W L + +
Sbjct: 175 QGK----------NVVD----KIEDLKEEWTFTRNANTKEVDWFLSNIE 209


>gi|115624784|ref|XP_001203738.1| PREDICTED: similar to MGC82677 protein [Strongylocentrotus
           purpuratus]
 gi|115633997|ref|XP_001177162.1| PREDICTED: similar to MGC82677 protein [Strongylocentrotus
           purpuratus]
          Length = 455

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 62/176 (35%), Gaps = 7/176 (3%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
           +   I+        D +  +       T L+ V+ +I+ +   F  + FL       E I
Sbjct: 270 ESDNIMVRASKAVTDRVSQLLGGVFSPTELSGVLTEIIKIDPTFTKEGFLKMCEL--EII 327

Query: 115 ---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171
              +++   G +  I+       Y      +           S ++ +D +++    + +
Sbjct: 328 PNILEAMIRGDLEIIKDWCYEAPYNQLATPIKQATQMGYKFDSKVLDVDMVELSMGKMMD 387

Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN--WVL 225
               + I  V Q I A  +   +++  D E   +V  +W   R+    +P   W L
Sbjct: 388 QGPVLVITFVAQQIMAVRNAKGVVVEGDLEKVMRVTYVWVLCRDQEVLDPTSAWRL 443


>gi|226500730|ref|NP_001147017.1| LOC100280627 [Zea mays]
 gi|194707278|gb|ACF87723.1| unknown [Zea mays]
 gi|195606496|gb|ACG25078.1| tim44-like domain containing protein [Zea mays]
          Length = 303

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 57/141 (40%), Gaps = 9/141 (6%)

Query: 96  TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155
           T +    F ++A   Y+ +      G   ++ K++  R++    + L  R+S   +V   
Sbjct: 159 TGYTKNQFYDQALKIYKEVNTLMAHGDTSSLRKILTERMHSTIKNELKRRQSMWNSVHWE 218

Query: 156 LV----GIDDMK-----IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
           LV     I  ++     +    +++  + +T+  V +    +Y+    ++S D      V
Sbjct: 219 LVEPAVSIRTLRARMIGLDKNDLDKAFIQLTLEFVTKQKFEAYNSKGAVVSGDKSKEVLV 278

Query: 207 IDIWTFVRNIPPSNPNWVLIS 227
            DIW F R++      W +  
Sbjct: 279 KDIWVFERSLFHPGAYWRVCG 299


>gi|195353703|ref|XP_002043343.1| GM10044 [Drosophila sechellia]
 gi|194127457|gb|EDW49500.1| GM10044 [Drosophila sechellia]
          Length = 458

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 64/149 (42%), Gaps = 3/149 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ M ++V +   FD KDFL +   +    I++S   G +  ++       +    +
Sbjct: 300 TELSETMTELVKIDPSFDQKDFLRDCETDIIPNILESIVRGDLEILKDWCFESTFNIIAN 359

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K     + S ++ I+++++    + E    + I    Q I    D+ + ++  DP
Sbjct: 360 PIKEAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKSQVVEGDP 419

Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
           E   +V  +W   R+    NP   W L+ 
Sbjct: 420 EKVMRVHYVWVLCRDRNELNPKAAWRLME 448


>gi|34580481|ref|ZP_00141961.1| hypothetical protein [Rickettsia sibirica 246]
 gi|157828477|ref|YP_001494719.1| hypothetical protein A1G_03400 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933195|ref|YP_001649984.1| hypothetical protein RrIowa_0720 [Rickettsia rickettsii str. Iowa]
 gi|28261866|gb|EAA25370.1| unknown [Rickettsia sibirica 246]
 gi|157800958|gb|ABV76211.1| hypothetical protein A1G_03400 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908282|gb|ABY72578.1| hypothetical protein RrIowa_0720 [Rickettsia rickettsii str. Iowa]
          Length = 211

 Score = 86.5 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 84/229 (36%), Gaps = 25/229 (10%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M      +L+FA I F++  +L   LG  +  E+     + G+ V        + +  + 
Sbjct: 1   MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSIVKSNKEE 60

Query: 66  KKKDNLDSINELFPIG-----TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
           K       I     I      T +   M  +      FDP  F+N A+ +++ I+++ ++
Sbjct: 61  KNIPTAQDIKAFKDIIVEHNITAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
                + +L+D R  ++F        S      SS +     K     +  N ++I +  
Sbjct: 121 KDAKELSELIDKRYLEEFEKITP---SYGDFFDSSAL---SAKYSEIYMFGNNIFIKLLF 174

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            G+           ++         + + WTF RN      +W L + +
Sbjct: 175 QGK----------NVVD----KIEDLKEEWTFTRNANTKEVDWFLSNIE 209


>gi|321466881|gb|EFX77874.1| hypothetical protein DAPPUDRAFT_305300 [Daphnia pulex]
          Length = 420

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 60/149 (40%), Gaps = 7/149 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138
           T +++ + +I  +  DF  ++FL   +  Y+ I   +++   G +  ++       +   
Sbjct: 262 TEMSEALTEICKMDPDFSKEEFLK--KCEYDIIPNVLEAMARGDLDILKDWCHEGPFNIL 319

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
           +  +    S    +   ++ +D++ +    + E    + I    Q I    DK N ++  
Sbjct: 320 STPIKHALSQGYVIDCRVLDVDNVDLAMGKVMEQGPILVITFTAQQIMCVRDKANNIVEG 379

Query: 199 DPEIFGKVIDIWTFVRNIPPSNPN--WVL 225
           D E   +V  +W   R+    + N  W L
Sbjct: 380 DAEKVMRVNYVWVLCRDQTELDVNAAWRL 408


>gi|115923274|ref|XP_783807.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115954833|ref|XP_001197316.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 368

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 62/176 (35%), Gaps = 7/176 (3%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
           +   I+        D +  +       T L+ V+ +I+ +   F  + FL       E I
Sbjct: 183 ESDNIMVRASKAVTDRVSQLLGGVFSPTELSGVLTEIIKIDPTFTKEGFLKMCEL--EII 240

Query: 115 ---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171
              +++   G +  I+       Y      +           S ++ +D +++    + +
Sbjct: 241 PNILEAMIRGDLEIIKDWCYEAPYNQLATPIKQATQMGYKFDSKVLDVDMVELSMGKMMD 300

Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN--WVL 225
               + I  V Q I A  +   +++  D E   +V  +W   R+    +P   W L
Sbjct: 301 QGPVLVITFVAQQIMAVRNAKGVVVEGDLEKVMRVTYVWVLCRDQEVLDPTSAWRL 356


>gi|260898311|ref|ZP_05906807.1| import inner membrane translocase, subunit Tim44 [Vibrio
           parahaemolyticus Peru-466]
 gi|260901532|ref|ZP_05909927.1| import inner membrane translocase, subunit Tim44 [Vibrio
           parahaemolyticus AQ4037]
 gi|308088422|gb|EFO38117.1| import inner membrane translocase, subunit Tim44 [Vibrio
           parahaemolyticus Peru-466]
 gi|308110872|gb|EFO48412.1| import inner membrane translocase, subunit Tim44 [Vibrio
           parahaemolyticus AQ4037]
          Length = 237

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 16/156 (10%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           IL+   I F +F  +RG+LG K G  N++     F G     ++                
Sbjct: 96  ILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNASKFEQPNMQNFEQQPNTNAGG 155

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
                    +                 FD   F+N +R  Y  +  ++   ++  IE+ V
Sbjct: 156 FTGFGAQTDVPHNYP----------PGFDQAAFINGSREHYRILQGAWNHNQLDTIEEYV 205

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN 166
              +++D     + R   E    + ++ + D +I+ 
Sbjct: 206 SPSLFEDLK---AERAKLEGEQHTDVMYV-DAEIVR 237


>gi|221130340|ref|XP_002162926.1| PREDICTED: similar to translocase of inner mitochondrial membrane
           44 [Hydra magnipapillata]
          Length = 325

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 60/175 (34%), Gaps = 7/175 (4%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
           +   +I        + L  +       +     + +I  +   F+   F+ E    +E I
Sbjct: 140 ESDNVIIRATRVVTNKLSDVFSDVFSQSEQAATIAEITKIDPSFNKDKFIKECE--FEII 197

Query: 115 ---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171
              ++++  G +  ++      V+   +  +    +     +S ++ I D+ ++ A I E
Sbjct: 198 PTVLEAYLRGDIECLQDWCHEGVFSILSTQIKNNSAQGLVNESRILDIRDVDLVMAKIME 257

Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN--PNWV 224
               + +    Q +S   D    +I    +    V  +W   R+    +    W 
Sbjct: 258 QGPVLILTFQAQQVSIMKDSKGKIIEGGEDNIESVNYVWAMCRDQSIYDHHSAWR 312


>gi|15892527|ref|NP_360241.1| hypothetical protein RC0604 [Rickettsia conorii str. Malish 7]
 gi|15619688|gb|AAL03142.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 211

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 84/229 (36%), Gaps = 25/229 (10%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M      +L+FA I F++  +L   LG  +  E+     + G+ +        + +  + 
Sbjct: 1   MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPIIKDVTYSIVKSNKEE 60

Query: 66  KKKDNLDSINELFPIG-----TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
           K       I     I      T +   M  +      FDP  F+N A+ +++ I+++ ++
Sbjct: 61  KNIPTAQDIKAFKDIIVEHNITAIVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
                + +L+D R  ++F        S      SS +     K     +  N ++I +  
Sbjct: 121 KDAKELSELIDKRYLEEFEKITP---SYGDFFDSSAL---SAKYSEIYMFGNNIFIKLLF 174

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            G+           ++         + + WTF RN      +W L + +
Sbjct: 175 QGK----------NVVD----KIEDLKEEWTFTRNANTKEVDWFLSNIE 209


>gi|145349615|ref|XP_001419224.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579455|gb|ABO97517.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 221

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 54/194 (27%), Gaps = 15/194 (7%)

Query: 49  YVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR 108
                   R                  E      +    +         F  + F  EA+
Sbjct: 17  AEPYAGPPRRPTLAEWATTSKGWRYAYEAATSRAKDAYALSKCAKEVRGFTLEGFKQEAK 76

Query: 109 NSYEAIVDSFFE-GKVHAI----EKLVDSRVYQDFNDSLSTRKSNEK-NVKSSLVGIDDM 162
             Y+ I  S    G    +          +   D      +R+      V  +L  ID+ 
Sbjct: 77  QMYKMINASSANVGHGKTLEHETRHATTDKTQSDLKRERKSRERGGWARVDWNLESIDEC 136

Query: 163 KIINASIE---------ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213
           +++   +               +T R  G+   A+YD    L++ DP+    V D W F 
Sbjct: 137 QVVRGRLIMANANDSNGPGFAQLTTRFRGKQRFAAYDARGRLVAGDPDEILDVEDFWVFE 196

Query: 214 RNIPPSNPNWVLIS 227
             +   N  W L  
Sbjct: 197 HGLKIPNARWRLAG 210


>gi|238650294|ref|YP_002916146.1| hypothetical protein RPR_00625 [Rickettsia peacockii str. Rustic]
 gi|238624392|gb|ACR47098.1| hypothetical protein RPR_00625 [Rickettsia peacockii str. Rustic]
          Length = 211

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 84/230 (36%), Gaps = 27/230 (11%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSK------RDERGI 59
           M      +L+FA I F++  +L   LG  +  E+     + G+ V         +  +  
Sbjct: 1   MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSIVKSNKEE 60

Query: 60  ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
             +   +       I     I T +   M  +      FDP  F+N A+ +++ I+++ +
Sbjct: 61  KNIPTAQDIKVFKDIIVEHNI-TAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAY 119

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +     + +L+D R  ++F        S      SS +     K     +  N ++I + 
Sbjct: 120 KKDAKELSELIDKRYLEEFEKITP---SYGDFFDSSAL---SAKYSEIYMFGNNIFIKLL 173

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
             G+           ++         + + WTF RN      +W L + +
Sbjct: 174 FQGK----------NVVD----KIEDLKEEWTFTRNANTKEVDWFLSNIE 209


>gi|260310504|gb|ACX36515.1| RE11601p [Drosophila melanogaster]
          Length = 428

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 3/176 (1%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
           +    +        D +  +       T L++ M ++V +   FD KDFL +   +    
Sbjct: 243 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 302

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I++S   G +  ++       +    + +   K     + S ++ I+++++      E  
Sbjct: 303 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGVYLDSKILDIENIELAMGKFMEQG 362

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
             + I    Q I    D+ + ++  DPE   +V  +W   R+    NP   W L+ 
Sbjct: 363 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 418


>gi|24648138|ref|NP_650786.2| CG11779, isoform A [Drosophila melanogaster]
 gi|78706780|ref|NP_001027193.1| CG11779, isoform D [Drosophila melanogaster]
 gi|7300484|gb|AAF55639.1| CG11779, isoform A [Drosophila melanogaster]
 gi|71854566|gb|AAZ52532.1| CG11779, isoform D [Drosophila melanogaster]
          Length = 459

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 69/176 (39%), Gaps = 3/176 (1%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
           +    +        D +  +       T L++ M ++V +   FD KDFL +   +    
Sbjct: 274 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 333

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I++S   G +  ++       +    + +   K     + S ++ I+++++    + E  
Sbjct: 334 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGVYLDSKILDIENIELAMGKVMEQG 393

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
             + I    Q I    D+ + ++  DPE   +V  +W   R+    NP   W L+ 
Sbjct: 394 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 449


>gi|195388820|ref|XP_002053076.1| GJ23681 [Drosophila virilis]
 gi|194151162|gb|EDW66596.1| GJ23681 [Drosophila virilis]
          Length = 428

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 69/178 (38%), Gaps = 7/178 (3%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
           +    +        D +  +       T L++ M ++V +  +FD K+FL +     + I
Sbjct: 243 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPNFDQKEFLYDCEK--DII 300

Query: 115 ---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171
              +++   G +  ++       Y      +   K +   + S ++ I+++++    + E
Sbjct: 301 PNVLEAIVRGDLEILKDWCFESTYNIIATPIMQAKKSGLYLDSKILDIENIELAMGKVME 360

Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
               + I    Q I    D+   ++  +P+   +V  +W   R+    NP   W L+ 
Sbjct: 361 QGPVLIITFQAQQIMCVRDQKAQVVEGNPDKVMRVHYVWVLCRDRNELNPKAAWRLME 418


>gi|326796036|ref|YP_004313856.1| import inner membrane translocase subunit Tim44 [Marinomonas
           mediterranea MMB-1]
 gi|326546800|gb|ADZ92020.1| import inner membrane translocase subunit Tim44 [Marinomonas
           mediterranea MMB-1]
          Length = 284

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 80/232 (34%), Gaps = 45/232 (19%)

Query: 6   MDSGDFL------ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59
           M SG F       ILLFA I  F+  +                          KR  +  
Sbjct: 89  MGSGAFDGISFGDILLFALI-GFLIYK--------------------FFIAPKKRAAQQA 127

Query: 60  ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
              G G  ++      +  P+        +  + +   F+ + F+ EA+N Y A+  ++ 
Sbjct: 128 QAAGHGAYREMPQDSFQPSPMAGGAGFGGQPEIQLPPGFNEQAFVAEAKNHYIALQKAWD 187

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNE-KNVKSSLVGIDDMKIINASIEENTVYITI 178
           +     I++ V   +Y         R        K+ +V +  + ++      +T  I++
Sbjct: 188 DSNFETIQEYVSPELYNMLK---EERAKLGADKPKTDVVSLM-VDLVRGEFIGSTASISL 243

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           +  G        K+            +  +IW   +N+  ++ +WV++  + 
Sbjct: 244 QFSGWI------KEG-------SETSETKEIWHLEKNMSDASSSWVIVGIQQ 282


>gi|114775481|ref|ZP_01451049.1| import inner membrane translocase, subunit Tim44 [Mariprofundus
           ferrooxydans PV-1]
 gi|114553592|gb|EAU55973.1| import inner membrane translocase, subunit Tim44 [Mariprofundus
           ferrooxydans PV-1]
          Length = 289

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 74/219 (33%), Gaps = 29/219 (13%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           I++   +   +F  LR    K++    P    ++G               G+    D  D
Sbjct: 99  IVMIGAVLALLFFFLR----KRS---TPAQPSYAGGQPMHD--------YGQSYTTDVED 143

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
            + E       +   +R       D D K F+  A+  Y  +  ++  G    I K   +
Sbjct: 144 QVYEENTPRDPVGTALR------PDIDEKHFIPAAKQIYVRMQKAWDNGDTEDIRKFCTA 197

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            +     + +++        ++ +  ++  ++ ++ +E +  ++ +         + D  
Sbjct: 198 EI----AERIASDMKPGTENRTEVATLN-AELADSWVESDLEWVAVNFTAMLREQTLDAS 252

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
              +    +   +V ++W F       +P W L   +  
Sbjct: 253 GTTLD---DQTAEVNEVWIFQHAPKSDDPTWYLAGIQQA 288


>gi|302836449|ref|XP_002949785.1| hypothetical protein VOLCADRAFT_104441 [Volvox carteri f.
           nagariensis]
 gi|300265144|gb|EFJ49337.1| hypothetical protein VOLCADRAFT_104441 [Volvox carteri f.
           nagariensis]
          Length = 393

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 55/150 (36%), Gaps = 3/150 (2%)

Query: 64  KGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
           +      +  + +L      G+  ++ MR+I      FD   F+   +     +V +F +
Sbjct: 209 ETSDHPVVHKVEDLKARMFTGSEASRAMREIRVRDPAFDMNRFVQSVKLDAPTVVRAFLK 268

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
             + A+ +     + + F                S++ I D++I+   + ++  +I  + 
Sbjct: 269 HDLEALSQHCGPELLERFAGIFKHFNEQGVFEDPSILFIGDVEIVEVRLMDDDPFIIAQF 328

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIW 210
             Q +  + DK   +I        +V   W
Sbjct: 329 HCQQLKCTRDKFGNVIDGSANQIQRVYYFW 358


>gi|67459060|ref|YP_246684.1| hypothetical protein RF_0668 [Rickettsia felis URRWXCal2]
 gi|67004593|gb|AAY61519.1| unknown [Rickettsia felis URRWXCal2]
          Length = 211

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 82/229 (35%), Gaps = 25/229 (10%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M      +L+FA I F++  +L   LG  +  E+     + G+ V        + +  + 
Sbjct: 1   MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSTVKSNKEE 60

Query: 66  KKKDNLDSINELFPIG-----TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
           K       I     I      T +   M  +      FDP  F+N A+ +++ I+++ ++
Sbjct: 61  KNIPTAQDIKAFKDIIVEHNITAVVDGMEQVHKHLYSFDPIKFINNAKTAFQMIIEAAYK 120

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
                + +L+D R  ++F       K          +     K     +  N ++I +  
Sbjct: 121 KDAKELSELIDKRYLEEFE------KITPSYGDFFDLSALSAKYSEIYMFGNNIFIKLLF 174

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            G+           ++         + + WTF RN      +W L + +
Sbjct: 175 QGK----------NVVD----KIEDLKEEWTFTRNANTKEVDWFLSNIE 209


>gi|24648140|ref|NP_732403.1| CG11779, isoform B [Drosophila melanogaster]
 gi|7300485|gb|AAF55640.1| CG11779, isoform B [Drosophila melanogaster]
          Length = 428

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 69/176 (39%), Gaps = 3/176 (1%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
           +    +        D +  +       T L++ M ++V +   FD KDFL +   +    
Sbjct: 243 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 302

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I++S   G +  ++       +    + +   K     + S ++ I+++++    + E  
Sbjct: 303 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGVYLDSKILDIENIELAMGKVMEQG 362

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
             + I    Q I    D+ + ++  DPE   +V  +W   R+    NP   W L+ 
Sbjct: 363 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 418


>gi|47225693|emb|CAG08036.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 397

 Score = 85.3 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 61/147 (41%), Gaps = 3/147 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLN-EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T +++V+ +I+ V   FD   FL    R+    I+++  +G++  ++       Y     
Sbjct: 239 TEMSEVLTEILKVDPSFDKDSFLKLCERDIIPNILEAMIQGELDVLKDWCYEATYSQLAH 298

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K+      S ++ ID++ +    + +    + I    Q +    +    ++  DP
Sbjct: 299 PIQQAKATGLKFHSKILDIDNIDLAMGKMMDQGPVLIITFQAQLVMVIRNPKGEVVEGDP 358

Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVL 225
           +   +++ +W   R+    NP   W L
Sbjct: 359 DKVIRMMYVWALCRDQEELNPYAAWRL 385


>gi|195452294|ref|XP_002073291.1| GK13236 [Drosophila willistoni]
 gi|194169376|gb|EDW84277.1| GK13236 [Drosophila willistoni]
          Length = 457

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 65/149 (43%), Gaps = 3/149 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ M ++V +  +FD K+FL++   +    I+++   G +  ++       Y   + 
Sbjct: 299 TELSETMTELVKIDPNFDQKEFLHDCETDIIPNILEAIVRGDLDILKDWCFESTYSIIST 358

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K     + S ++ I+++++    + E    + I    Q I    D+   ++  DP
Sbjct: 359 PILNAKKTGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKAQVVEGDP 418

Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
           E   +V  +W   R+    NP   W L+ 
Sbjct: 419 EKVMRVHYVWVLCRDRNELNPKAAWRLME 447


>gi|212722222|ref|NP_001131676.1| hypothetical protein LOC100193036 [Zea mays]
 gi|194692218|gb|ACF80193.1| unknown [Zea mays]
          Length = 474

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 49/158 (31%)

Query: 53  KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
             D R             +  +NE     T      R+I      F   DF+ + +   +
Sbjct: 283 AEDVRERWETSDNPVVQKIQDLNESLLEETSAAVTFREIRQRDPSFSLSDFVADVQEMIK 342

Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
            ++ ++ +G    ++      V +          S        ++ I +  ++   +  +
Sbjct: 343 PVLTAYSKGDAETLKNYCTKEVIERCKGEREAYASQGIFFDHKILHISEADVLETKMFGS 402

Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210
           +  I +R   Q I    D++  +     +    V   W
Sbjct: 403 SPIIILRFQTQQIYCVRDREGQVTEGGQDTIQTVFYSW 440


>gi|194900032|ref|XP_001979561.1| GG16152 [Drosophila erecta]
 gi|190651264|gb|EDV48519.1| GG16152 [Drosophila erecta]
          Length = 459

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 69/176 (39%), Gaps = 3/176 (1%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
           +    +        D +  +       T L++ M ++V +   FD KDFL +   +    
Sbjct: 274 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPCFDQKDFLRDCETDIIPN 333

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I++S   G +  ++       +    + +   K     + S ++ I+++++    + E  
Sbjct: 334 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGLYLDSKILDIENIELAMGKVMEQG 393

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
             + I    Q I    D+ + ++  DPE   +V  +W   R+    NP   W L+ 
Sbjct: 394 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 449


>gi|242012401|ref|XP_002426921.1| import inner membrane translocase subunit TIM44, putative
           [Pediculus humanus corporis]
 gi|212511150|gb|EEB14183.1| import inner membrane translocase subunit TIM44, putative
           [Pediculus humanus corporis]
          Length = 474

 Score = 84.9 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 3/147 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ + +IV V   F    FL++   +    I+++   G +  +        Y   + 
Sbjct: 316 TELSETLTEIVKVDPGFTKAKFLHQCETDIIPNILEAMVRGDLDILRDWCHDGPYNLLSQ 375

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K+    + S ++ I+ + +    I +    + I    Q I    DK+N +I  DP
Sbjct: 376 PIKQIKAMGGKLDSKILDIEGLDLTVGKIMDQGPVLIITFTCQQIQCVRDKNNKVIDGDP 435

Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVL 225
           +   +V  +W   R+    +P   W L
Sbjct: 436 QKVMRVNYVWALSRDKSVLDPKAAWRL 462


>gi|91206049|ref|YP_538404.1| hypothetical protein RBE_1234 [Rickettsia bellii RML369-C]
 gi|157826585|ref|YP_001495649.1| hypothetical protein A1I_01080 [Rickettsia bellii OSU 85-389]
 gi|91069593|gb|ABE05315.1| unknown [Rickettsia bellii RML369-C]
 gi|157801889|gb|ABV78612.1| hypothetical protein A1I_01080 [Rickettsia bellii OSU 85-389]
          Length = 211

 Score = 84.5 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 85/229 (37%), Gaps = 25/229 (10%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M      +L+FA I FF+  +L   LG  + ++      + G+ V          +  + 
Sbjct: 1   MSPQIIELLIFAGIAFFIINKLITTLGATSDDDPAKQKSYFGEPVIKDVTHSSNKSYEEE 60

Query: 66  KKKDNLDSINE-----LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
           K       I       +    T +   M  +      F P  F+N A+ +++ I+++ ++
Sbjct: 61  KDLPTAQDIKTFKNLIVEQNITAVVDGMETVHKRLNAFQPIKFINNAKIAFQMIIEAAYK 120

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
            +   + +LVD R  ++F   +S   S      S+ +     K        N ++I +  
Sbjct: 121 NQTEELAELVDKRFLEEFEK-ISD--SYGNFFDSTALN---AKYSEIYTFGNNIFIKLLF 174

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            G+           ++        ++ + WTF RN      +W L + +
Sbjct: 175 QGK----------NVVD----KIEELKEEWTFTRNANTKEVDWFLSNIE 209


>gi|241834608|ref|XP_002415012.1| mitochondrial import inner membrane translocase, subunit TIM44,
           putative [Ixodes scapularis]
 gi|215509224|gb|EEC18677.1| mitochondrial import inner membrane translocase, subunit TIM44,
           putative [Ixodes scapularis]
          Length = 415

 Score = 84.5 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 59/176 (33%), Gaps = 7/176 (3%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
           +    +        D +  I       T L++V+ +I  +   FD  +FL +     + I
Sbjct: 230 ESDNPLVRASRTLTDKVSDIFGGLFQKTELSEVLTEICKMDPAFDKNEFLRQCET--DII 287

Query: 115 ---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171
              +++   G +  +        +   +  +           S ++ + ++ +    I E
Sbjct: 288 PNVLEAIVRGDLEILRDWCHDAPFNVLSTPIKQAAQLGYRFDSKVLDVTNVDLAMGKIME 347

Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
               + I    Q I    +    ++  DPE   ++   W   R+    +P   W L
Sbjct: 348 QGPVLIITFQSQQIMVVRNAKGDVVEGDPEKIMRMHYAWVLCRDQNELDPRAAWKL 403


>gi|326511515|dbj|BAJ91902.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326516904|dbj|BAJ96444.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 481

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 47/140 (33%)

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           +  INE     T      R+I      F   DF+ + +   + ++ ++ +G +  ++K  
Sbjct: 308 IQDINETIFEETATAASFREIRRRDPSFSLSDFIGDVQEMIKPVLTAYSKGDLKTLKKYC 367

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              + +          S        ++ I D  +    +  +T  I +    Q I    D
Sbjct: 368 TKEILERCEGERKGYASQGIFFDHKILHISDADVRETKMLGSTPIILVMFRTQEIHCIRD 427

Query: 191 KDNLLISSDPEIFGKVIDIW 210
           K+  +     +    V   W
Sbjct: 428 KEGKVTEGGQDSIRTVYYQW 447


>gi|62897685|dbj|BAD96782.1| translocase of inner mitochondrial membrane 44 homolog [Homo
           sapiens]
          Length = 452

 Score = 84.2 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 61/149 (40%), Gaps = 7/149 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138
           T +++V+ +I+ V   FD   FL +  N  + I   +++   G++  ++       Y   
Sbjct: 294 TEMSEVLTEILRVDPAFDKDRFLKQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 351

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
              +   K+      S ++ ID++ +    + E    + I    Q +    +    ++  
Sbjct: 352 AHPIQQAKALGLQFHSRILDIDNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKGEVVEG 411

Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
           DP+   +++ +W   R+    NP   W L
Sbjct: 412 DPDKVLRMLYVWALCRDQDELNPYAAWRL 440


>gi|224062145|ref|XP_002300777.1| predicted protein [Populus trichocarpa]
 gi|222842503|gb|EEE80050.1| predicted protein [Populus trichocarpa]
          Length = 484

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 58/167 (34%), Gaps = 8/167 (4%)

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           +  +++     +      ++I      F   DF+ E + +   +++++ +G +  ++K  
Sbjct: 312 IQDVSDSIFQESDAAASFKEIRRKDPSFSLMDFVAEVQEAVRPVLNAYIKGDIDTLKKYC 371

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              V           +++     + ++ I D+++    +   +  I +    Q +    D
Sbjct: 372 TPEVINRCEAEHKAFQAHGIFFDNKILHITDVEVRETKMMGTSPIIIVVFQTQQVHCVRD 431

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSN-------PNWVLISTKL 230
           +   +     +    V   W  +R +           P W L+  + 
Sbjct: 432 RHGAITEGGQDTIHTVYYAWA-MRQVDAEELGGGAIYPIWKLMEMQQ 477


>gi|332852444|ref|XP_003316109.1| PREDICTED: mitochondrial import inner membrane translocase subunit
           TIM44 isoform 1 [Pan troglodytes]
          Length = 452

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 61/149 (40%), Gaps = 7/149 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138
           T +++V+ +I+ V   FD   FL +  N  + I   +++   G++  ++       Y   
Sbjct: 294 TEMSEVLTEILRVDPAFDKDRFLKQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 351

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
              +   K+      S ++ ID++ +    + E    + I    Q +    +    ++  
Sbjct: 352 AHPIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEG 411

Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
           DP+   +++ +W   R+    NP   W L
Sbjct: 412 DPDKVLRMLYVWALCRDQDELNPYVAWRL 440


>gi|33636719|ref|NP_006342.2| mitochondrial import inner membrane translocase subunit TIM44
           precursor [Homo sapiens]
 gi|25014073|sp|O43615|TIM44_HUMAN RecName: Full=Mitochondrial import inner membrane translocase
           subunit TIM44; Flags: Precursor
 gi|21708003|gb|AAH33628.1| Translocase of inner mitochondrial membrane 44 homolog (yeast)
           [Homo sapiens]
 gi|119589360|gb|EAW68954.1| translocase of inner mitochondrial membrane 44 homolog (yeast),
           isoform CRA_a [Homo sapiens]
 gi|119589361|gb|EAW68955.1| translocase of inner mitochondrial membrane 44 homolog (yeast),
           isoform CRA_a [Homo sapiens]
 gi|123980796|gb|ABM82227.1| translocase of inner mitochondrial membrane 44 homolog (yeast)
           [synthetic construct]
 gi|123995621|gb|ABM85412.1| translocase of inner mitochondrial membrane 44 homolog (yeast)
           [synthetic construct]
 gi|158260291|dbj|BAF82323.1| unnamed protein product [Homo sapiens]
 gi|307685105|dbj|BAJ20483.1| translocase of inner mitochondrial membrane 44 homolog [synthetic
           construct]
          Length = 452

 Score = 83.8 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 61/149 (40%), Gaps = 7/149 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138
           T +++V+ +I+ V   FD   FL +  N  + I   +++   G++  ++       Y   
Sbjct: 294 TEMSEVLTEILRVDPAFDKDRFLKQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 351

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
              +   K+      S ++ ID++ +    + E    + I    Q +    +    ++  
Sbjct: 352 AHPIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEG 411

Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
           DP+   +++ +W   R+    NP   W L
Sbjct: 412 DPDKVLRMLYVWALCRDQDELNPYAAWRL 440


>gi|2809420|gb|AAB97740.1| translocase of inner mitochondrial membrane Tim44 precursor [Homo
           sapiens]
          Length = 452

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 61/149 (40%), Gaps = 7/149 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138
           T +++V+ +I+ V   FD   FL +  N  + I   +++   G++  ++       Y   
Sbjct: 294 TEMSEVLTEILRVDPAFDKDRFLKQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 351

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
              +   K+      S ++ ID++ +    + E    + I    Q +    +    ++  
Sbjct: 352 AHPIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEG 411

Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
           DP+   +++ +W   R+    NP   W L
Sbjct: 412 DPDKVLRMLYVWALCRDQDELNPYAAWRL 440


>gi|332296059|ref|YP_004437982.1| import inner membrane translocase subunit Tim44 [Thermodesulfobium
           narugense DSM 14796]
 gi|332179162|gb|AEE14851.1| import inner membrane translocase subunit Tim44 [Thermodesulfobium
           narugense DSM 14796]
          Length = 316

 Score = 83.4 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 61/147 (41%), Gaps = 5/147 (3%)

Query: 83  RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
            +++ +++I   +  F  +D  ++ +  +  I  ++ E     +  L  + ++ +F   +
Sbjct: 171 DVDRGLKEIERAFPSFSEEDLRSKIKEIFVNIQKAWSEKNFTMLRNLTTNEMFLNFQKQI 230

Query: 143 STRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI 202
                N        + +  M +++A +E+  +Y+T +I         D ++ ++  + + 
Sbjct: 231 EELNKNGITNFVENISVKRMDLVDAWMEDEKIYVTYKIEATMTDYDVDVNDNILRGNKDK 290

Query: 203 FGKVIDIWTFVRNIPPSNP-NWVLIST 228
                ++W+FV      +   W L + 
Sbjct: 291 LIDFQELWSFV----SKDSIKWELSAI 313


>gi|66519233|ref|XP_395866.2| PREDICTED: mitochondrial import inner membrane translocase subunit
           TIM44-like isoform 1 [Apis mellifera]
          Length = 456

 Score = 83.4 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 64/180 (35%), Gaps = 13/180 (7%)

Query: 54  RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-E 112
            +    +        + +  I       T L++ + +I  +  +FD   FL      Y E
Sbjct: 270 EESDNPVIRASRLLTEKVTDIVGGLFQKTDLSETLTEICKLDPNFDRIQFLK-----YCE 324

Query: 113 A-----IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167
                 I+++   G +  ++       Y+     L   +     + + ++ I+++ +I  
Sbjct: 325 TDIIPNILEAMVRGNLEILKDWCHEAPYKLIAQPLIQVEKLGYQLDNKILDINNVDLIMG 384

Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
            + E    + I    Q I    D    +I  DPE   +V  IW   R+    NP   W L
Sbjct: 385 KVMEQGPVLIISFQCQQIMCVRDAKKNVIEGDPEKVMRVNYIWVLCRDPTELNPKAAWRL 444


>gi|170584097|ref|XP_001896855.1| Tim44-like domain containing protein [Brugia malayi]
 gi|158595793|gb|EDP34297.1| Tim44-like domain containing protein [Brugia malayi]
          Length = 773

 Score = 83.0 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 66/154 (42%), Gaps = 8/154 (5%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138
           + +++V+ +I  V  +F+  ++L       E I   +++F  G +  ++     R Y   
Sbjct: 614 SEISEVLSEIQKVDPNFEKNEWLRFCEK--EIIPNVLEAFIRGDLKILKDWCYERAYNIL 671

Query: 139 NDSLSTRKSNE-KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197
           + +++  K        S ++ I+ ++++   + E+   I I      ++   + +  ++ 
Sbjct: 672 SATVNEYKKINFNTTDSRIIDINRVEMVTGKMMEHGPVIIITFQAYMVNIVRNMEGKVVE 731

Query: 198 SDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTK 229
            DP    +V  +W   R++   NP   W ++   
Sbjct: 732 GDPNSPVRVHHVWVMCRDMEEYNPRVAWKVLEVH 765


>gi|222055934|ref|YP_002538296.1| import inner membrane translocase subunit Tim44 [Geobacter sp.
           FRC-32]
 gi|221565223|gb|ACM21195.1| import inner membrane translocase subunit Tim44 [Geobacter sp.
           FRC-32]
          Length = 315

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 62/159 (38%), Gaps = 7/159 (4%)

Query: 75  NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134
           N   P+   ++  + +I S+   FD + F +   +++  I  ++    +  +  L+   +
Sbjct: 160 NSSLPVADTVDSGIANIRSMDASFDEQRFKDSVMDTFFRIQGAWMNRDLAPVSILLTEEM 219

Query: 135 YQDFNDSLST--RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY-DK 191
                + +S   R      +++  + +  ++I  A  E    +IT  I    +  +  D 
Sbjct: 220 KNILQEDVSRLLRDRQVNRLEN--IAVRSVEIAEAWQESGQDFITASIYANLLDYTTDDA 277

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
              ++S +     K  + WTF R +  +   W L +   
Sbjct: 278 TGAVVSGNRTEPVKFEEYWTFTRPVGAN--AWRLSAIDQ 314


>gi|115471689|ref|NP_001059443.1| Os07g0409700 [Oryza sativa Japonica Group]
 gi|50508458|dbj|BAD30582.1| mitochondrial inner membrane translocating protein-like protein
           [Oryza sativa Japonica Group]
 gi|113610979|dbj|BAF21357.1| Os07g0409700 [Oryza sativa Japonica Group]
 gi|215686787|dbj|BAG89637.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701468|dbj|BAG92892.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218199472|gb|EEC81899.1| hypothetical protein OsI_25725 [Oryza sativa Indica Group]
 gi|222636882|gb|EEE67014.1| hypothetical protein OsJ_23936 [Oryza sativa Japonica Group]
          Length = 475

 Score = 82.6 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 48/161 (29%), Gaps = 6/161 (3%)

Query: 53  KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
             D R             +  +NE     T      R+I      F   DF   A +  E
Sbjct: 284 AEDVRERWETSDNPVVQKIQDLNESIFEETATAVSFREIRQRDPSFSLPDF---AGDVQE 340

Query: 113 AI---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
            I   + ++ +G V  ++K     V +          S        ++ I D  +    +
Sbjct: 341 MIKPVLTAYSKGDVKTLKKYCTKEVIERCKGERDAYASQGIFFDHKILHISDADVRETKM 400

Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210
             +T  I +    Q I    D++  +     +    V   W
Sbjct: 401 MGSTPIIIVGFQTQQIYCVRDREGQVTEGGQDTIQTVFYAW 441


>gi|332701192|ref|ZP_08421280.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332551341|gb|EGJ48385.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 313

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 77/227 (33%), Gaps = 25/227 (11%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           MD     IL+FA +  F   ++     ++  +E  ++G    +                G
Sbjct: 111 MDFLLIGILIFAGVMVF---RMFAA--RRQQSEYSYAGAAQRQAEAPVDQGSW-----GG 160

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
            + D L S         + +   R   S    F+  +FL  A+  Y  +  S+    +  
Sbjct: 161 SQWDKLRSAPASGQANGQADSQARP-GSNVPGFNEDEFLRGAKMVYTRLQASWDARDLED 219

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           I +     VY      ++ + + +    ++ + + + +++    +   V  T+       
Sbjct: 220 IREFTSPEVY----AEIARQAAQDPTPSTTEILLVNARLLEVKQQSAQVLATVYFDVLMR 275

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
               DK            G+V ++W F+R       +W L   +  E
Sbjct: 276 ---EDKAQN-------APGQVREVWHFLRENDDPKSSWKLEGIQQLE 312


>gi|332852446|ref|XP_512338.3| PREDICTED: mitochondrial import inner membrane translocase subunit
           TIM44 isoform 2 [Pan troglodytes]
          Length = 415

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 61/149 (40%), Gaps = 7/149 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138
           T +++V+ +I+ V   FD   FL +  N  + I   +++   G++  ++       Y   
Sbjct: 257 TEMSEVLTEILRVDPAFDKDRFLKQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 314

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
              +   K+      S ++ ID++ +    + E    + I    Q +    +    ++  
Sbjct: 315 AHPIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEG 374

Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
           DP+   +++ +W   R+    NP   W L
Sbjct: 375 DPDKVLRMLYVWALCRDQDELNPYVAWRL 403


>gi|296232753|ref|XP_002761726.1| PREDICTED: mitochondrial import inner membrane translocase subunit
           TIM44 [Callithrix jacchus]
          Length = 452

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 60/149 (40%), Gaps = 7/149 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138
           T +++ + +I+ V   FD   FL +  N  + I   +++   G++  ++       Y   
Sbjct: 294 TEMSEALTEILRVDPAFDKDRFLKQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 351

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
              +   K+      S ++ ID++ +    + E    + I    Q +    +    ++  
Sbjct: 352 AHPIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMLVRNPKGEVVEG 411

Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
           DP+   +++ +W   R+    NP   W L
Sbjct: 412 DPDKVLRMLYVWALCRDQDELNPYAAWRL 440


>gi|255567254|ref|XP_002524608.1| mitochondrial import inner membrane translocase subunit tim44,
           putative [Ricinus communis]
 gi|223536161|gb|EEF37816.1| mitochondrial import inner membrane translocase subunit tim44,
           putative [Ricinus communis]
          Length = 486

 Score = 82.2 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 60/175 (34%), Gaps = 3/175 (1%)

Query: 39  KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPI---GTRLNKVMRDIVSVY 95
           K F+G        S+     +    +      +  I ++       T      ++I    
Sbjct: 279 KRFAGISEPVVTKSQEIAEDMRERWETSDNPIVHKIQDVSDTIFQETDAAASFKEIRRRD 338

Query: 96  TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155
             F   DF+ E + +   +++++ +G +  ++K   S V           +S+     + 
Sbjct: 339 PSFSLMDFVAEVQEAVRPVLNAYIKGDLETLKKYCTSEVITRCEAEHKAFQSHGIFFDNK 398

Query: 156 LVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210
           ++ I ++++    +   +  I +    Q +    D+D  +     +    V   W
Sbjct: 399 ILHISEVEVRETKMMGTSPIIIVAFQTQQVHCVRDRDGAITEGGQDTIHTVYYAW 453


>gi|152997235|ref|YP_001342070.1| import inner membrane translocase subunit Tim44 [Marinomonas sp.
           MWYL1]
 gi|150838159|gb|ABR72135.1| import inner membrane translocase subunit Tim44 [Marinomonas sp.
           MWYL1]
          Length = 289

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 60/164 (36%), Gaps = 18/164 (10%)

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
            ++     +  P+        +  + +   F+ + F+ EA+N Y  +  ++ +     I 
Sbjct: 141 PNSTRDNVQPSPMSGISGFGAQPEIKLPPGFNEQAFVAEAKNHYITLQKAWDDNNFDEIL 200

Query: 128 KLVDSRVYQDFNDSLSTRKSNEK-NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
             V   +Y      ++ R ++     ++ ++ +   +++      +T  I+++       
Sbjct: 201 DYVSPELYNLL---VAERATHGDNKPRTEVISLM-AELVRGEYIGSTASISLQFS----- 251

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                   +   D        +IW   +N+  +N NW ++  + 
Sbjct: 252 ------GWIKEGD--QTSDTNEIWHLEKNMSDANGNWTIVGIQQ 287


>gi|4103602|gb|AAD01797.1| putative mitochondrial inner membrane protein import receptor [Homo
           sapiens]
          Length = 415

 Score = 82.2 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 61/149 (40%), Gaps = 7/149 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138
           T +++V+ +I+ V   FD   FL +  N  + I   +++   G++  ++       Y   
Sbjct: 257 TEMSEVLTEILRVDPPFDKDRFLKQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 314

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
              +   K+      S ++ ID++ +    + E    + I    Q +    +    ++  
Sbjct: 315 AHPIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEG 374

Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
           DP+   +++ +W   R+    NP   W L
Sbjct: 375 DPDKVLRMLYVWALCRDQDELNPYAAWRL 403


>gi|297703381|ref|XP_002828619.1| PREDICTED: mitochondrial import inner membrane translocase subunit
           TIM44-like [Pongo abelii]
          Length = 451

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 61/149 (40%), Gaps = 7/149 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138
           T +++V+ +I+ V   FD   FL +  N  + I   +++   G++  ++       Y   
Sbjct: 293 TEMSEVLTEILRVDPAFDKDRFLKQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 350

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
              +   K+      S ++ ID++ +    + E    + I    Q +    +    ++  
Sbjct: 351 AHPIQQAKALGLQFHSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEG 410

Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
           +P+   +++ +W   R+    NP   W L
Sbjct: 411 NPDEVLRMLYVWALCRDQDELNPYAAWRL 439


>gi|90075058|dbj|BAE87209.1| unnamed protein product [Macaca fascicularis]
          Length = 453

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 61/149 (40%), Gaps = 7/149 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138
           T +++V+ +I+ V   FD   FL +  N  + I   +++   G++  ++       Y   
Sbjct: 295 TEMSEVLTEILRVDPAFDKDRFLKQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 352

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
              +   K+      S ++ ID++ +    + E    + I    Q +    +    ++  
Sbjct: 353 AYPIQQAKALGLQFHSRILDIDNIDLAMGKMMEPGPVLIITFQAQLVMVVRNPKGEVVEG 412

Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
           DP+   +++ +W   R+    NP   W L
Sbjct: 413 DPDKVLRMLYVWALYRDQDELNPYAAWRL 441


>gi|17508985|ref|NP_491780.1| hypothetical protein T09B4.9 [Caenorhabditis elegans]
 gi|6016367|sp|O02161|TIM44_CAEEL RecName: Full=Probable mitochondrial import inner membrane
           translocase subunit tim-44; Flags: Precursor
 gi|2039379|gb|AAB53011.1| Hypothetical protein T09B4.9 [Caenorhabditis elegans]
          Length = 425

 Score = 81.8 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 71/174 (40%), Gaps = 14/174 (8%)

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA-----IVDSFFEG 121
           +   + I  +F     +++V+ +I  +  +FD +++L      + E      I+++F   
Sbjct: 252 RGVTEKIGSVFSGQNEVSEVLTEIHKIDANFDKQEWLR-----FCETKIIPNILEAFIRF 306

Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNE-KNVKSSLVGIDDMKIINASIEENTVYITIRI 180
            +  ++     R Y   +  +   +        S ++ I+ +++    + E    + I  
Sbjct: 307 DLEVLQSWCHERAYTQLSTVVKEYQKMHFSTKDSRIIDINKVEMATGKMMEQGPVLIISF 366

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKLGE 232
               I+ + + D  ++  DP+   ++  IW   R++   NP   W L+   + E
Sbjct: 367 QVYMINVTKNADGKVVEGDPDNPKRINHIWVLCRDVEEYNPALAWKLLEVHMQE 420


>gi|222054950|ref|YP_002537312.1| import inner membrane translocase subunit Tim44 [Geobacter sp.
           FRC-32]
 gi|221564239|gb|ACM20211.1| import inner membrane translocase subunit Tim44 [Geobacter sp.
           FRC-32]
          Length = 321

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 72/222 (32%), Gaps = 24/222 (10%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F ILL A I  ++  +            K         Y  +      +  +  G   +
Sbjct: 118 LFEILLLAGI-GYLIYR----------FVKKNRETAPATYGQTGYQGGTVTPISSGSGYE 166

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
            +       P    L   +  I  +   FD + F +   + +  +  ++    +  +  +
Sbjct: 167 AV------QPASDDLTTGLSHIRQMDPSFDEQRFNDGVMDMFFKVQGAWMNRDLSPVNGI 220

Query: 130 VDSRVYQDFNDSLST--RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
               + +   + +    R      +++  + + +++I     E    +IT +I    +  
Sbjct: 221 FTDEMRRILQEDVERLLRDRQVNRLEN--IAVRNVEIAEVWQESGQDFITAQIYANLLDY 278

Query: 188 SYDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           + D     ++S       K  + WTF R +   N  W L + 
Sbjct: 279 TTDDTTGAVVSGSKTDPVKFEEYWTFTRPVG--NNQWRLSAI 318


>gi|157964519|ref|YP_001499343.1| hypothetical protein RMA_0619 [Rickettsia massiliae MTU5]
 gi|157844295|gb|ABV84796.1| hypothetical protein RMA_0619 [Rickettsia massiliae MTU5]
          Length = 211

 Score = 81.8 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 25/229 (10%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M      +L+FA ITF++  +L   LG  +  E+     + G+ +        + +  + 
Sbjct: 1   MSPQIIELLIFAVITFYIINKLITTLGSTSEEEQTNQKSYFGEPIIKDVTYSTVKSNKEE 60

Query: 66  KKKDNLDSINELFPIG-----TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
           K       I     I      T +   M  +      FDP  F+N A+ +++ I+++ ++
Sbjct: 61  KNIPTTQDIKAFKDIIVEHNITAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
                + +L+D R   +F   ++   S      SS +     K     +  N ++I +  
Sbjct: 121 KDAKELSELIDKRYLAEFEK-ITP--SYGDFFDSSAL---SAKYSEIYMFGNNIFIKLLF 174

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            G+           ++         + + WTF RN      +W L + +
Sbjct: 175 QGK----------NVVD----KIEDLKEEWTFTRNANTKEVDWFLSNIE 209


>gi|258593729|emb|CBE70070.1| Import inner membrane translocase, subunit Tim44 precursor
           (fragment) [NC10 bacterium 'Dutch sediment']
          Length = 244

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/221 (9%), Positives = 74/221 (33%), Gaps = 16/221 (7%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           +++   I   ++     V+ +++            +  +  +         +  +     
Sbjct: 38  LVILGGIGLAIYW----VVKQRS-------RPALIEAPYQHQRTWSAEREPERYQGAAAG 86

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
               +      L++ M  I  +   F+         + +  +  ++    +  I  ++  
Sbjct: 87  QATMVQE--GDLDQGMAHIRQMDPGFETGRLREICTDLFFKVQAAWGNRDLEPIRTILTP 144

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK- 191
            ++      +   ++  K  +   + +  +++  A  E+   Y+T+R +   +  + D+ 
Sbjct: 145 EMHTQLGADVMRLRNERKINRLENIAVRSVELTEAWQEQGQDYVTVRFLANLLDYTVDEG 204

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            + ++        K  + WT  R +   NP W L +    +
Sbjct: 205 TSQVVDGSRTDPVKFEEYWTVTRPVG-PNP-WRLAAINQAD 243


>gi|118103065|ref|XP_418174.2| PREDICTED: similar to Translocase of inner mitochondrial membrane
           44 homolog (yeast) [Gallus gallus]
          Length = 451

 Score = 81.5 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 68/178 (38%), Gaps = 8/178 (4%)

Query: 53  KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
              +   I   +       D I  LF   T +++V+ +I+ V   FD   FL +     +
Sbjct: 265 DESDNAFIRASRAVTDKVTDLIGGLFSK-TEMSEVLTEILKVDPSFDKDRFLKQCER--D 321

Query: 113 AI---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
            I   +++   G++  ++       Y      +   K+      S ++ ID++ +    +
Sbjct: 322 IIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKAMGLQFHSRILDIDNIDLAMGKM 381

Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
            E    + I    Q +    ++   ++  DP+   +++ +W   R+    NP   W L
Sbjct: 382 MEQGPVLIITFQAQIVMVIKNQKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRL 439


>gi|291241124|ref|XP_002740467.1| PREDICTED: mitochondrial import inner membrane translocase subunit
           TIM44-like [Saccoglossus kowalevskii]
          Length = 457

 Score = 81.5 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 62/176 (35%), Gaps = 7/176 (3%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
           +    +        D +  +       T +++V+ +I+ +   F    FL +  +  E I
Sbjct: 272 ESDNAVIRASRVVTDKVSQLLGGVFTKTEMSEVLTEIIKIDPHFSKDKFLRQCES--EII 329

Query: 115 ---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171
              +++   G +  ++       +      +    +      S ++ ID ++++   + E
Sbjct: 330 PNILEAMIRGDLDVLKDWCYEAPFNAIAVPVRQAIALGYKFDSKVLDIDYLELVMGKMME 389

Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP--PSNPNWVL 225
               + I    Q I    +  + ++  D +   +V  +W   R+      +  W L
Sbjct: 390 QGPVLIISFQTQQIQVVRNAKHEIVEGDEDKVVRVQYVWVLCRDQEELNPDAAWKL 445


>gi|73987180|ref|XP_542123.2| PREDICTED: similar to Import inner membrane translocase subunit
           TIM44, mitochondrial precursor [Canis familiaris]
          Length = 454

 Score = 81.5 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 62/149 (41%), Gaps = 7/149 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138
           T +++V+ +I+ V   FD + FL +  N  + I   +++   G++  ++       Y   
Sbjct: 296 TEMSEVLTEILRVDPAFDKERFLQQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 353

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
              +   K+      S ++ ID++ +    + E    + I    Q +    +    ++  
Sbjct: 354 AHPIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEG 413

Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
           DP+   +++ +W   R+    NP   W L
Sbjct: 414 DPDKVLRMLYVWALCRDQDELNPYAAWRL 442


>gi|297275995|ref|XP_001098363.2| PREDICTED: mitochondrial import inner membrane translocase subunit
           TIM44 [Macaca mulatta]
          Length = 461

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 61/149 (40%), Gaps = 7/149 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138
           T +++V+ +I+ V   FD   FL +  N  + I   +++   G++  ++       Y   
Sbjct: 303 TEMSEVLTEILRVDPAFDKDRFLKQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 360

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
              +   K+      S ++ ID++ +    + E    + I    Q +    +    ++  
Sbjct: 361 AYPIQQAKALGLQFHSRILDIDNIDLAMGKMMEPGPVLIITFQAQLVVVVRNPKGEVVEG 420

Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
           DP+   +++ +W   R+    NP   W L
Sbjct: 421 DPDKVLRMLYVWALCRDQDELNPYAAWRL 449


>gi|289741253|gb|ADD19374.1| mitochondrial import inner membrane translocase subunit TIM44
           [Glossina morsitans morsitans]
          Length = 421

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 68/178 (38%), Gaps = 4/178 (2%)

Query: 54  RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYE 112
            +    +        D +  +       T L++ M ++  +  +FD K FL +   +   
Sbjct: 234 EESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELCKIDPNFDQKQFLRDCEVDIIP 293

Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
            I+++   G +  ++       Y      ++    +   + S ++ I+++ ++   + E 
Sbjct: 294 NILEATVRGDLEILKDWCFESTYNLIATPINQAIKSGLCLDSKILDIENIDLVMGKVMEQ 353

Query: 173 TVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
              + I    Q I    D+  N ++  DPE   +V  +W   R+    NP   W L+ 
Sbjct: 354 GPVLIITFQAQQIMCLKDRATNKIVEGDPEKVMRVNHVWVLCRDPNELNPKAAWRLLE 411


>gi|311248590|ref|XP_003123248.1| PREDICTED: mitochondrial import inner membrane translocase subunit
           TIM44-like [Sus scrofa]
          Length = 454

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 62/149 (41%), Gaps = 7/149 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138
           T +++V+ +I+ V   FD + FL +  N  + I   +++   G++  ++       Y   
Sbjct: 296 TEMSEVLTEILRVDPAFDKERFLQQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 353

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
              +   K+      S ++ ID++ +    + E    + I    Q +    +    ++  
Sbjct: 354 AHPIQQAKALGLQFHSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEG 413

Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
           DP+   +++ +W   R+    NP   W L
Sbjct: 414 DPDKVLRMLYVWALCRDQDELNPYAAWRL 442


>gi|300798484|ref|NP_001179583.1| mitochondrial import inner membrane translocase subunit TIM44 [Bos
           taurus]
 gi|297476712|ref|XP_002688909.1| PREDICTED: translocase of inner mitochondrial membrane 44 homolog
           (yeast) [Bos taurus]
 gi|296485872|gb|DAA27987.1| translocase of inner mitochondrial membrane 44 homolog [Bos taurus]
          Length = 454

 Score = 81.1 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 60/149 (40%), Gaps = 7/149 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138
           T +++V+ +I+ V   FD   FL +  N  + I   +++   G++  ++       Y   
Sbjct: 296 TEMSEVLTEILRVDPAFDKDRFLQQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 353

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
              +   K+      S ++ ID + +    + E    + I    Q +    +    ++  
Sbjct: 354 AHPIQQAKALGLQFHSRILDIDHIDLAMGKMMEQGPVLIITFQAQMVMVIKNPKGEVVEG 413

Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
           DP+   +++ +W   R+    NP   W L
Sbjct: 414 DPDKVLRMLYVWALCRDQDELNPYAAWRL 442


>gi|85544427|pdb|2CW9|A Chain A, Crystal Structure Of Human Tim44 C-Terminal Domain
          Length = 194

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 7/149 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138
           T  ++V+ +I+ V   FD   FL +  N  + I   +++   G++  ++       Y   
Sbjct: 36  TEXSEVLTEILRVDPAFDKDRFLKQCEN--DIIPNVLEAXISGELDILKDWCYEATYSQL 93

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
              +   K+      S ++ ID++ +      E    + I    Q +    +    ++  
Sbjct: 94  AHPIQQAKALGLQFHSRILDIDNVDLAXGKXVEQGPVLIITFQAQLVXVVRNPKGEVVEG 153

Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
           DP+   + + +W   R+    NP   W L
Sbjct: 154 DPDKVLRXLYVWALCRDQDELNPYAAWRL 182


>gi|42569661|ref|NP_181151.3| ATTIM44-2; protein-transmembrane transporting ATPase [Arabidopsis
           thaliana]
 gi|53828527|gb|AAU94373.1| At2g36070 [Arabidopsis thaliana]
 gi|330254108|gb|AEC09202.1| translocase inner membrane subunit 44-2 [Arabidopsis thaliana]
          Length = 469

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 60/188 (31%), Gaps = 11/188 (5%)

Query: 23  VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82
           VF +L       +G  +P       K      D R             +  +NE     T
Sbjct: 260 VFKRL-------SGMSEPVVN----KSQEIAEDVREKWETSDNPIVHKIQDMNERIFEET 308

Query: 83  RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
                 ++I      F   DF++E + +   +++++ +G    ++K     + +      
Sbjct: 309 GSASTYKEIRRRDPSFSLPDFVSEIQEAIRPVLNAYSKGDAKTLKKYCSKELIERCTAEH 368

Query: 143 STRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI 202
               S        L+ + ++ I    +   T  I +R   Q I    D+D  +     + 
Sbjct: 369 RAFTSQGYFFDHKLLHVSEVDIQETKMMGTTPVIIVRFQTQEIFCVRDQDGKIKEGGQDT 428

Query: 203 FGKVIDIW 210
              V   W
Sbjct: 429 IHTVYYDW 436


>gi|326934236|ref|XP_003213198.1| PREDICTED: mitochondrial import inner membrane translocase subunit
           TIM44-like [Meleagris gallopavo]
          Length = 435

 Score = 80.7 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 68/178 (38%), Gaps = 8/178 (4%)

Query: 53  KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
              +   I   +       D I  LF   T +++V+ +I+ V   FD   FL +     +
Sbjct: 249 DESDNAFIRASRAVTDKVTDLIGGLFSK-TEMSEVLTEILKVDPSFDKDRFLKQCER--D 305

Query: 113 AI---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
            I   +++   G++  ++       Y      +   K+      S ++ ID++ +    +
Sbjct: 306 IIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKAMGLQFHSRILDIDNIDLAMGKM 365

Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
            E    + I    Q +    ++   ++  DP+   +++ +W   R+    NP   W L
Sbjct: 366 MEQGPVLIITFQAQVVMVIKNQKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRL 423


>gi|332029994|gb|EGI69819.1| Mitochondrial import inner membrane translocase subunit TIM44
           [Acromyrmex echinatior]
          Length = 452

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 64/184 (34%), Gaps = 6/184 (3%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
           +    +        D +  I       T L++ + +I  +   F    FL +    +   
Sbjct: 267 ESDNAVLRASRLLTDKVSDIIGGLFQKTELSETLTEICKLDPTFCKIQFLKDCETDFIPN 326

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I+++   G +  ++       Y   +      K       S ++ ID++ ++   + E  
Sbjct: 327 ILEAMIRGDLEILKDWCHEGPYNIISQPHREVKKLGHYSDSKILDIDNVDLVMGKMMEQG 386

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWV---LIST 228
             + I    Q I    +  N +I  DP+   +V  +W   R+    NP   W    L +T
Sbjct: 387 PVLIISFQSQQIMCVKNSKNEVIEGDPQKVMRVNYVWVLCRDRTELNPKAAWRLLDLSAT 446

Query: 229 KLGE 232
              +
Sbjct: 447 SSEQ 450


>gi|307181325|gb|EFN68959.1| Mitochondrial import inner membrane translocase subunit TIM44
           [Camponotus floridanus]
          Length = 452

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 6/157 (3%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T L++ + +I  +  +F    FL +    +   I+++   G +  ++       Y     
Sbjct: 294 TELSETLTEICKLDPNFSKIQFLKDCETDFIPNILEAMIRGDLEILKDWCHEGPYNLIAQ 353

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
                K       S ++ ID++ ++   + E    + I    Q I    +  N +I  DP
Sbjct: 354 PHKEVKKLGHYSDSKILDIDNVDLMMGKMMEQGPVLIISFQSQQIMCVRNSKNEVIEGDP 413

Query: 201 EIFGKVIDIWTFVRNIP--PSNPNWV---LISTKLGE 232
           +   +V  +W   R+     S   W    L +T   +
Sbjct: 414 QKVMRVNYVWVMCRDRTELNSKAAWRLLDLSATSSEQ 450


>gi|224085633|ref|XP_002307643.1| predicted protein [Populus trichocarpa]
 gi|222857092|gb|EEE94639.1| predicted protein [Populus trichocarpa]
          Length = 485

 Score = 80.7 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 62/167 (37%), Gaps = 8/167 (4%)

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           +  +++     +     +++I      F   DF+ E + +   +++++ +G +  ++K  
Sbjct: 313 IQDVSDSIFQESDAAASIKEIRRRDLSFSLMDFVAEVQEAIRPVLNAYMKGDIETLKKYC 372

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
            S V           +++     + ++ I D+++    +   +  I +    Q +    D
Sbjct: 373 TSEVINRREAEHKAFEAHGIFFDNKILHISDVEVREIKMMGTSPLIIVAFQTQQVHCIRD 432

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSN-------PNWVLISTKL 230
           ++  +     +    V   W  +R + P         P W L+  + 
Sbjct: 433 QNGAITEGGQDTIHTVYYAWA-MRQVDPEELGGGAIYPIWKLMEMQQ 478


>gi|196001245|ref|XP_002110490.1| hypothetical protein TRIADDRAFT_54556 [Trichoplax adhaerens]
 gi|190586441|gb|EDV26494.1| hypothetical protein TRIADDRAFT_54556 [Trichoplax adhaerens]
          Length = 473

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 58/177 (32%), Gaps = 11/177 (6%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-- 112
           +   ++        D L          + +++ + +I  +  +F  + FL      ++  
Sbjct: 277 ESDNVVIRATRVVTDRLSDAFSGIFSPSEMSQTLAEISKIDPNFSKEKFL----LHFQHR 332

Query: 113 ---AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
              +++++F  G +  ++       Y      +       + +   ++ + D+ I  A I
Sbjct: 333 IMPSVLEAFLRGDLPILKDWCHESAYSVLEARIKQLTGMGRKLDFKVLDVRDIDIAMAKI 392

Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWV 224
            E    + +    Q I    D    ++  D      V  +W   R+    +    W 
Sbjct: 393 MEQGPVLVMTFQAQQILVLRDSSGKVVEGDENHIENVQYVWAMCRDQSIYDAHSAWR 449


>gi|308809217|ref|XP_003081918.1| mitochondrial import inner membrane translocase subunit TIM44,
           putative (ISS) [Ostreococcus tauri]
 gi|116060385|emb|CAL55721.1| mitochondrial import inner membrane translocase subunit TIM44,
           putative (ISS) [Ostreococcus tauri]
          Length = 182

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 56/130 (43%), Gaps = 1/130 (0%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL-VDSRVYQDFND 140
           T   +  R I S    F+  DF+ E R     ++ ++  G V A+++  +   + +  + 
Sbjct: 16  TEQAEAYRLIRSRDPMFNTNDFIAEVRRDIPKVLGAYLRGDVDALKETNISKEMLERLSG 75

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            ++  K+  + V   ++ + +++++   + EN   + +    Q I+   DK   ++    
Sbjct: 76  QMNLWKAEGQFVDPRILDLSEVELMEVRMMENEPLVVLTFSCQQINCVRDKSGKIVEGGE 135

Query: 201 EIFGKVIDIW 210
           +    V  +W
Sbjct: 136 DDIQSVHYLW 145


>gi|317487361|ref|ZP_07946152.1| Tim44-like domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316921384|gb|EFV42679.1| Tim44-like domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 318

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 77/224 (34%), Gaps = 25/224 (11%)

Query: 13  ILL--FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           IL+    F+ F  F + R       G  +P +G F         D     T      K  
Sbjct: 114 ILIGGLLFLAFKFFSRRRA---ATQGAGQPNAGGFDSLRSTPGSDSTHQRTAAPQSGKGG 170

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
            D    L    +    + +D       FD ++FL  A+ +Y  + +++ +  +  I +  
Sbjct: 171 FD-WEALTTPSSGQQPLYQDEPKKPAGFDEEEFLRGAKAAYTRLNNAWDKRDLSDIAQFS 229

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
                  F   +  + + +K   ++ + + +  +++     +     +            
Sbjct: 230 TP----AFQKEIQQQAAEDKTPGNTEIMLVNASLLSVDTVGDEQIAQVYF---------- 275

Query: 191 KDNLLISSDP--EIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
             N+L+  DP  E    V +IW FVR     +  W L   +  E
Sbjct: 276 --NVLLREDPSQEAPIDVREIWHFVRP-ASGDGTWKLDGIQQVE 316


>gi|301773124|ref|XP_002921985.1| PREDICTED: mitochondrial import inner membrane translocase subunit
           TIM44-like, partial [Ailuropoda melanoleuca]
          Length = 452

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 62/149 (41%), Gaps = 7/149 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138
           T +++V+ +I+ V   FD + FL +  N  + I   +++   G++  ++       Y   
Sbjct: 294 TEMSEVLTEILRVDPAFDKERFLQQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 351

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
              +   ++      S ++ ID++ +    + E    + I    Q +    +    ++  
Sbjct: 352 AHPIQQARALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEG 411

Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
           DP+   +++ +W   R+    NP   W L
Sbjct: 412 DPDKVLRMLYVWALCRDQDELNPYAAWRL 440


>gi|258405234|ref|YP_003197976.1| import inner membrane translocase subunit Tim44 [Desulfohalobium
           retbaense DSM 5692]
 gi|257797461|gb|ACV68398.1| import inner membrane translocase subunit Tim44 [Desulfohalobium
           retbaense DSM 5692]
          Length = 298

 Score = 80.3 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 75/213 (35%), Gaps = 31/213 (14%)

Query: 21  FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPI 80
            F  ++L    G +     P S     +   S  D       G        + +      
Sbjct: 109 VFFVVRLFKGRGTR----GPSSKSPPRQDQRSAPDRFDTAAAG-------WEHLRSKPAG 157

Query: 81  GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           G    +   +  S+  DFD ++FL  A+  Y+ + +++ +  +  I       V++    
Sbjct: 158 GPPPPEPTDEEESIPQDFDTQEFLKGAKIVYQRLQEAWDDRDLEDIRGFTTPEVFR---- 213

Query: 141 SLSTRKSNEK---NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197
               R+  ++     ++ +V +   ++ N   +    ++++        +  D +     
Sbjct: 214 --EIRRQAKEDPNTSQTEIV-LLQAEVRNVRRDGAVTHVSVAFEALLRESPQDSE----- 265

Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                  +V ++W F R+   S+ +W+L   + 
Sbjct: 266 -----TRQVRELWHFQRDESRSDSHWLLEGLEQ 293


>gi|255086703|ref|XP_002509318.1| mitochondrial protein translocase family [Micromonas sp. RCC299]
 gi|226524596|gb|ACO70576.1| mitochondrial protein translocase family [Micromonas sp. RCC299]
          Length = 415

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 67/183 (36%), Gaps = 3/183 (1%)

Query: 29  GVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVM 88
            V  K  G ++  +     + +   R+     T          D     F   T   +  
Sbjct: 198 SVFSKLEGLKQTPAYKKGEEMLEDARERW--ETSDNPMVHRIQDITEGAFFAETEQAEAY 255

Query: 89  RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK-LVDSRVYQDFNDSLSTRKS 147
           R +     DF+   F+ E R     ++ ++ +G V A+E+  V   + +     +   + 
Sbjct: 256 RVLQQRVPDFNMNGFIAEVRRDVPKVLGAYLKGDVEALERCAVSKEMLERMGGQMKLWQH 315

Query: 148 NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
             + V   ++ + +M+++     +N   I ++   Q I+   +KD  ++    +    V 
Sbjct: 316 EGQFVDPRILHLSEMELVEVRTLDNAPMIVLQFSCQQINCVRNKDGEIVEGAEDDIQSVH 375

Query: 208 DIW 210
            +W
Sbjct: 376 YLW 378


>gi|148262974|ref|YP_001229680.1| import inner membrane translocase, subunit Tim44 [Geobacter
           uraniireducens Rf4]
 gi|146396474|gb|ABQ25107.1| import inner membrane translocase, subunit Tim44 [Geobacter
           uraniireducens Rf4]
          Length = 314

 Score = 79.9 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 74/222 (33%), Gaps = 25/222 (11%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F ILL A I  ++  +            K      +    +    + G +T   G    
Sbjct: 112 LFEILLLAGI-GYLIYR----------FVKKKREANAAYSSYGGAYQGGTVTPVSGGYLG 160

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
           N        P    +   +  +  +   FD   F +   +++  I  ++    +  +  L
Sbjct: 161 ND-------PQPDDVAAGLAHVRQMDASFDENRFNDLVMDNFFKIQGAWMNRDLTPVTGL 213

Query: 130 VDSRVYQDFNDSLST--RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
           +   + + F + L    R      +++  + + +++I     E    +IT  I    +  
Sbjct: 214 LTDEMKRIFQEDLDRLLRDKQVNRLEN--IAVRNVEIAEVWQESGQDFITALIYANLLDY 271

Query: 188 SY-DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           +  D   +++S       K  + WT  R +   N  W L + 
Sbjct: 272 TTDDATGVVVSGSKTEPVKFEEYWTLTRPVG--NNPWRLSAI 311


>gi|268567730|ref|XP_002640066.1| Hypothetical protein CBG12550 [Caenorhabditis briggsae]
 gi|187029170|emb|CAP31512.1| hypothetical protein CBG_12550 [Caenorhabditis briggsae AF16]
          Length = 425

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 71/174 (40%), Gaps = 14/174 (8%)

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA-----IVDSFFEG 121
           +   + I  +F     +++V+ +I  +  +FD +++L      + E      I+++F   
Sbjct: 252 RGVTERIGSVFSGQNEVSEVLTEIHKIDANFDKQEWLK-----FCETKIIPNILEAFIRF 306

Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNE-KNVKSSLVGIDDMKIINASIEENTVYITIRI 180
            +  ++     R +   +  +   +        S ++ I+ +++    + E    + I  
Sbjct: 307 DLEVLQSWCHERAFTQLSTVVKEYQKMHWSTKDSRIIDINKVEMATGKMMEQGPVLIISF 366

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKLGE 232
               I+ + + +  ++  DP+   ++  IW   R++   NP   W L+   + E
Sbjct: 367 QVYMINVTKNAEGKVVEGDPDNPKRINHIWVLCRDVEEYNPAIAWKLLEVHMQE 420


>gi|87122174|ref|ZP_01078057.1| hypothetical protein MED121_05298 [Marinomonas sp. MED121]
 gi|86162494|gb|EAQ63776.1| hypothetical protein MED121_05298 [Marinomonas sp. MED121]
          Length = 281

 Score = 79.9 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 79/232 (34%), Gaps = 47/232 (20%)

Query: 6   MDSGDFL------ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59
           M SG F       ILLFA +  F+                        K+  + + ++  
Sbjct: 88  MGSGAFEGFAFGDILLFALV-GFLIY----------------------KFFIAPKRQQAA 124

Query: 60  ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
               + ++    DS  +         K     + +  DF+   F+ EA+N Y A+  ++ 
Sbjct: 125 ANNAQFRQMPGADSFQQAPNASANPFKAQDPAMQLPPDFNQAAFVAEAKNHYTALQKAWD 184

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNE-KNVKSSLVGIDDMKIINASIEENTVYITI 178
           E     I   V   +        + R +      K+ ++ + D++++    + +   IT+
Sbjct: 185 ENDFTEIADYVTPELLAMLQ---AERANYGADKPKTEVISL-DVELVRGEFQGSISSITL 240

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           +  G        K+        E      + W   +N+   + NW ++  + 
Sbjct: 241 KFSGWI------KEG-------EDTSDSTEYWHLEKNMSQQSSNWTIVGIQQ 279


>gi|308499393|ref|XP_003111882.1| hypothetical protein CRE_29458 [Caenorhabditis remanei]
 gi|308268363|gb|EFP12316.1| hypothetical protein CRE_29458 [Caenorhabditis remanei]
          Length = 425

 Score = 79.5 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 71/174 (40%), Gaps = 14/174 (8%)

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA-----IVDSFFEG 121
           +   + I  +F     +++V+ +I  +  +FD +++L      + E      I+++F   
Sbjct: 252 RGVTEKIGSVFSGQNEVSEVLTEIHKIDANFDKQEWLR-----FCETKIIPNILEAFIRF 306

Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNE-KNVKSSLVGIDDMKIINASIEENTVYITIRI 180
            +  ++     R +   +  +   +        S ++ I+ +++    + E    + I  
Sbjct: 307 DIEVLQSWCHERAFTQLSTVVKEYQKMHWSTKDSRIIDINKVEMATGKMMEQGPVLIISF 366

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKLGE 232
               I+ + + +  ++  DP+   ++  IW   R++   NP   W L+   + E
Sbjct: 367 QVYMINVTKNAEGKVVEGDPDNPKRINHIWVLCRDVEEYNPATAWKLLEVHMQE 420


>gi|149015618|gb|EDL74999.1| translocator of inner mitochondrial membrane 44, isoform CRA_b
           [Rattus norvegicus]
          Length = 453

 Score = 79.2 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 66/174 (37%), Gaps = 3/174 (1%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
           +   ++        D +  +       T +++V+ +I+ V   FD   FL++   +    
Sbjct: 268 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDRFLHQCETDIIPN 327

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I+++   G++  ++       Y     S+   K+      S ++ I ++ +    + E  
Sbjct: 328 ILEAMISGELDILKDWCYEATYNQLAHSIQQAKALGLQFHSRILDISNVDLAMGKMMEQG 387

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
             + +    Q +    +    +   DP+   +++ +W   R+    NP   W L
Sbjct: 388 PVLIVTFQAQLVMVIKNPKGEVFDGDPDKVLRMLYVWALCRDQEELNPYAAWRL 441


>gi|8394449|ref|NP_058963.1| mitochondrial import inner membrane translocase subunit TIM44
           precursor [Rattus norvegicus]
 gi|6016370|sp|O35094|TIM44_RAT RecName: Full=Mitochondrial import inner membrane translocase
           subunit TIM44; Flags: Precursor
 gi|2335041|dbj|BAA21820.1| Tim44 [Rattus norvegicus]
          Length = 453

 Score = 79.2 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 66/174 (37%), Gaps = 3/174 (1%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
           +   ++        D +  +       T +++V+ +I+ V   FD   FL++   +    
Sbjct: 268 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDRFLHQCETDIIPN 327

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I+++   G++  ++       Y     S+   K+      S ++ I ++ +    + E  
Sbjct: 328 ILEAMISGELDILKDWCYEATYNQLAHSIQQAKALGLQFHSRILDISNVDLAMGKMMEQG 387

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
             + +    Q +    +    +   DP+   +++ +W   R+    NP   W L
Sbjct: 388 PVLIVTFQAQLVMVIKNPKGEVFDGDPDKVLRMLYVWALCRDQEELNPYAAWRL 441


>gi|255081604|ref|XP_002508024.1| mitochondrial protein translocase family [Micromonas sp. RCC299]
 gi|226523300|gb|ACO69282.1| mitochondrial protein translocase family [Micromonas sp. RCC299]
          Length = 341

 Score = 79.2 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 9/141 (6%)

Query: 96  TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEK-NVKS 154
             F   +F  EA   Y  I     E  V ++  LV  +   D      TR+      +  
Sbjct: 176 KGFTRDNFKAEAGQLYRQISQLIAENHVTSLRHLVTEKALTDIKREAKTREKAGWGKIVW 235

Query: 155 SLVGIDDMKIINASI--------EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
            +  ++    +   +        +     +T+        A+YD    L++ DP  F  V
Sbjct: 236 EIRDLEKPVTLQGRMIFPNPQDKQMAFAQMTVGFRSHQRYAAYDAKGRLVAGDPNGFLPV 295

Query: 207 IDIWTFVRNIPPSNPNWVLIS 227
            D+W         N  W L +
Sbjct: 296 EDVWVLEHAFKLPNARWRLAA 316


>gi|303284301|ref|XP_003061441.1| mitochondrial protein translocase family [Micromonas pusilla
           CCMP1545]
 gi|226456771|gb|EEH54071.1| mitochondrial protein translocase family [Micromonas pusilla
           CCMP1545]
          Length = 289

 Score = 79.2 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 80/209 (38%), Gaps = 13/209 (6%)

Query: 27  LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK 86
           L  V  K  G ++  +   +   +   R+     T          DS++  F   T   +
Sbjct: 71  LTSVFSKLQGLKRTPAYQKTEDALEDLRERW--ETSENPMVHKIQDSVDGFFQE-TEQGE 127

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL-VDSRVYQDFNDSLSTR 145
             R I +    F+  DFL E R     I+ ++ +G V A+    V + + +  +  +   
Sbjct: 128 AYRAIRARAPTFNINDFLAEVRRDVPKILGAYLKGDVDALAMTNVSNEMMERMSGQMRAW 187

Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
           ++ +K V   ++ + D++++   + E    +  +   Q I+   D   +++    +    
Sbjct: 188 EAEQKFVDPRVLHLGDVELVETRMMEGAPLVVTQFQCQQINCVRDASGVIVEGAEDDIQA 247

Query: 206 VIDIWTFV---RNIPPSN------PNWVL 225
           V  +W      + +  ++      P WVL
Sbjct: 248 VHYLWAMQLVDKELVAADGRKYVAPTWVL 276


>gi|281349988|gb|EFB25572.1| hypothetical protein PANDA_010903 [Ailuropoda melanoleuca]
          Length = 405

 Score = 79.2 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 62/149 (41%), Gaps = 7/149 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138
           T +++V+ +I+ V   FD + FL +  N  + I   +++   G++  ++       Y   
Sbjct: 247 TEMSEVLTEILRVDPAFDKERFLQQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 304

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
              +   ++      S ++ ID++ +    + E    + I    Q +    +    ++  
Sbjct: 305 AHPIQQARALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEG 364

Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
           DP+   +++ +W   R+    NP   W L
Sbjct: 365 DPDKVLRMLYVWALCRDQDELNPYAAWRL 393


>gi|332264171|ref|XP_003281120.1| PREDICTED: mitochondrial import inner membrane translocase subunit
           TIM44 [Nomascus leucogenys]
          Length = 455

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 65/180 (36%), Gaps = 9/180 (5%)

Query: 53  KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
              +   I   +       D + E     T +++V+ +I+ V   FD   FL +  N  +
Sbjct: 266 DESDNAFIRASRALTDKVTDLLGEGSVSKTEMSEVLTEILRVDPAFDKDRFLKQCEN--D 323

Query: 113 AI-----VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167
            I     V +   G +      +  + Y      +   K+      S ++ ID++ +   
Sbjct: 324 IIPNVLEVGAAPPGPLPGSRSWLHQQTYSQLAHPIQQAKALGLQFHSRILDIDNVDLAMG 383

Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
            + E    + I    Q +    +    ++  DP+   +++ +W   R+    NP   W L
Sbjct: 384 KMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRL 443


>gi|126323825|ref|XP_001376780.1| PREDICTED: similar to Translocase of inner mitochondrial membrane
           44 homolog (yeast) [Monodelphis domestica]
          Length = 443

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 68/178 (38%), Gaps = 8/178 (4%)

Query: 53  KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
              +  +I + +       D +  LF   T +++V+ +I+ V   FD   FL +     +
Sbjct: 257 DESDNTLIRVSRAVTDKITDLVGGLFSK-TEMSEVLTEILKVDPTFDKDRFLQQCER--D 313

Query: 113 AI---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
            I   +++   G++  ++       Y      +   KS      S ++ I ++ +    +
Sbjct: 314 IIPNVLEAMITGELDILKDWCYEATYSQLAHPIHQAKSMGLQFHSRILDISNVDLAMGKM 373

Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
            E    + I    Q +    +    ++  DP+   +++ +W   R+    NP   W L
Sbjct: 374 MEQGPVLIITFQAQLVMVIKNPKGDVVEGDPDKVLRMLYVWALCRDQTELNPYAAWRL 431


>gi|145352217|ref|XP_001420450.1| MPT family transporter: inner membrane translocase (import) Tim44
           [Ostreococcus lucimarinus CCE9901]
 gi|144580684|gb|ABO98743.1| MPT family transporter: inner membrane translocase (import) Tim44
           [Ostreococcus lucimarinus CCE9901]
          Length = 286

 Score = 78.8 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 75/211 (35%), Gaps = 13/211 (6%)

Query: 28  RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFP---IGTRL 84
           +  LG  +  +K      +  Y         +    +      +  I +        T  
Sbjct: 63  KSKLGIASAFDKLEGLKKTAPYAKGAELAEDMRERWETSDSPVVHRIQDFQDNLFSETEQ 122

Query: 85  NKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL-VDSRVYQDFNDSLS 143
            +  R I      F+  DF+ E R     ++ ++ +G V A+++  + S + +  +  ++
Sbjct: 123 GEAYRMIRQRDPMFNINDFIAEVRRDIPKVLGAYLKGDVEALKQTNISSEMLERLSGQMN 182

Query: 144 TRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203
             K   ++V   ++ + +++++   + EN   + +    Q I+   DK   ++    +  
Sbjct: 183 LWKHEGQHVDPRILDLSEVELMEVRLMENEPLVVLTFSCQQINCVRDKSGAVVEGAEDDI 242

Query: 204 GKVIDIWTFV---RNIPPSN------PNWVL 225
             V  +W      +     +      P W L
Sbjct: 243 QSVHYLWAMQLVDKEYTTKDGRKYTKPTWAL 273


>gi|291411565|ref|XP_002722049.1| PREDICTED: translocase of inner mitochondrial membrane 44
           [Oryctolagus cuniculus]
          Length = 452

 Score = 78.8 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 60/147 (40%), Gaps = 3/147 (2%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T +++V+ +I+ V   FD   FL +   +    I+++   G++  ++       Y     
Sbjct: 294 TEMSEVLTEILRVDPAFDKDRFLQQCENDIIPNILEAMISGELDILKDWCYEATYSQLAH 353

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
            +   K+      S ++ +D++ +    + E    + I    Q +    +    ++  DP
Sbjct: 354 PIQQAKALGFQFHSRILDVDNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEGDP 413

Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVL 225
           +   +++ +W   R+    NP   W L
Sbjct: 414 DKVLRMLYVWALCRDQDELNPYAAWRL 440


>gi|297827085|ref|XP_002881425.1| attim44-2 [Arabidopsis lyrata subsp. lyrata]
 gi|297327264|gb|EFH57684.1| attim44-2 [Arabidopsis lyrata subsp. lyrata]
          Length = 469

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 58/175 (33%), Gaps = 3/175 (1%)

Query: 39  KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFP---IGTRLNKVMRDIVSVY 95
           K  SG        S+     ++   +      +  I ++       T      ++I    
Sbjct: 262 KRLSGMSEPVVNKSQEIAEDVMEKWETSDNPIVHKIQDMNEKIFEETGSASTYKEIRRRD 321

Query: 96  TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155
             F   DF  E + +   +++++ +G    ++K     + +         +S+       
Sbjct: 322 PSFSLPDFAVEIQEAIRPVLNAYSKGDAETLKKYCSKELIERCTAEHRAFQSHGYFFDHK 381

Query: 156 LVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210
           L+ + +++I    +   +  I +R   Q I    D++  +     +    V   W
Sbjct: 382 LLHVSEVEIKETKMMGTSPVIIVRFQTQEIFCVRDQNGNIKEGGQDTIHTVYYDW 436


>gi|168047419|ref|XP_001776168.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672543|gb|EDQ59079.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 354

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 46/129 (35%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
           T     MR+I      F   DFL E +      + ++ +G    + K     V +     
Sbjct: 193 TATAVAMREIRRHDPSFTFSDFLAEVQEEIRPTLRAYLKGDFATLRKKCSREVVERCQAE 252

Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201
               +S    + + ++ I D++I    +  N   I I    Q I  + +KD  +I    +
Sbjct: 253 RRALESQGIFLDNEILHISDVEIKETKLLGNAPIIIINFQTQQIHCARNKDGNIIEGARD 312

Query: 202 IFGKVIDIW 210
               V   W
Sbjct: 313 DIHTVFYAW 321


>gi|256083399|ref|XP_002577932.1| mitochondrial import inner membrane translocase subunit tim44
           [Schistosoma mansoni]
 gi|238663274|emb|CAZ34170.1| mitochondrial import inner membrane translocase subunit tim44,
           putative [Schistosoma mansoni]
          Length = 407

 Score = 78.4 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 7/147 (4%)

Query: 83  RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDFN 139
            L +V+ +I+ +   F+ + F+   R  +  I   +++   G +  +        Y    
Sbjct: 250 DLQQVLDEIIKMDPSFNLESFIRYCR--FVVIPNVLEAIVRGDLRILHDWCHEVPYNVLA 307

Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199
             L   K      +S ++ + ++ +    + E    + I    Q I+   DK+  L   D
Sbjct: 308 TPLKQMKELGYISESRILDVHNVDVQMGKMMEQGPVLIITFQAQQINCIRDKNGNLHEGD 367

Query: 200 PEIFGKVIDIWTFVRNIPPSNP--NWV 224
           P    +V ++W   R+    NP   W 
Sbjct: 368 PNKVLRVTNVWALCRDQSEMNPLAAWR 394


>gi|148224361|ref|NP_001087692.1| translocase of inner mitochondrial membrane 44 [Xenopus laevis]
 gi|51703695|gb|AAH81090.1| MGC82677 protein [Xenopus laevis]
          Length = 451

 Score = 78.4 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 4/176 (2%)

Query: 53  KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLN-EARNSY 111
              +   +   +       D I  LF   T +++V+ +I+ V  +FD   FL    R+  
Sbjct: 265 DESDNAFVRASRTITDKVSDLIGGLFSK-TEMSEVLTEILKVDPNFDKDKFLKLCERDII 323

Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171
             I+++   G +  ++       Y      +   KS      S ++ ID++ +    + E
Sbjct: 324 PNILEAMIRGDLDVLKDWCYEATYSQLAHPIQQAKSMGLQFNSRILDIDNIDLAMGKMME 383

Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
               + I    Q + A  ++   ++  D +   +++ +W   R+    NP   W L
Sbjct: 384 QGPVLIITFQAQLVMAITNQRGDIVEGDQDKVLRMLYVWALCRDQDELNPYAAWRL 439


>gi|301093253|ref|XP_002997475.1| Mitochondrial Protein Translocase (MPT) Family [Phytophthora
           infestans T30-4]
 gi|262110731|gb|EEY68783.1| Mitochondrial Protein Translocase (MPT) Family [Phytophthora
           infestans T30-4]
          Length = 467

 Score = 78.0 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 60/140 (42%), Gaps = 10/140 (7%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV-----DSFFEGKVHAIEKLVDSRVYQ 136
           T +   +++I     DF     L E + + E +V     ++F  G    ++K      Y 
Sbjct: 308 TPMAVAIKEIRRAEPDF----ILEEWKENIEEVVLPGVLEAFLRGNSRDLKKWFGEAAYS 363

Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI-RIVGQFISASYDKDNLL 195
             N ++  RKS    +   ++ ID++++I A+ E+    I + R   Q I+   +++  +
Sbjct: 364 RMNIAIRERKSEGLVMDPHVLSIDNVEVIEATAEDKQAPIILMRFQAQQINCIRNREGEV 423

Query: 196 ISSDPEIFGKVIDIWTFVRN 215
           +    +       I+ F R+
Sbjct: 424 VEGSEDEVLAYYYIFAFQRD 443


>gi|308807262|ref|XP_003080942.1| Putative mitochondrial/chloroplast ribosomal protein L45 (ISS)
           [Ostreococcus tauri]
 gi|116059403|emb|CAL55110.1| Putative mitochondrial/chloroplast ribosomal protein L45 (ISS)
           [Ostreococcus tauri]
          Length = 285

 Score = 78.0 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 63/213 (29%), Gaps = 20/213 (9%)

Query: 32  GKKTGN--EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMR 89
           G ++G    +  S   +  Y    R    +  L           + +      +    + 
Sbjct: 56  GARSGIRLNRTSSNVIAEPYAGPLRRPTIVQAL---TTSLGWRYVVDSALGKAKDAYALS 112

Query: 90  DIVSVYTDFDPKDFLNEARNSYEAIV--DSFFEGKV---HAIEKLVDSRVYQDFNDSLST 144
                   F    F  EA+  Y  I    +   G     H        ++  D       
Sbjct: 113 KCTKEIKGFTLDGFKAEAKQLYRMINATSASTSGTRALSHETRHATTDKMQSDLKRERKA 172

Query: 145 RKSNEK-NVKSSLVGIDDMKIINASIE---------ENTVYITIRIVGQFISASYDKDNL 194
           R+      +  SL  I++ +++   +             V +T R   +   A+YD    
Sbjct: 173 RELGGWGAIDWSLEDIEECQVVRGRLIMANPNDTSGAGFVQLTTRFRSRQRFAAYDGKGR 232

Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
           L+S DP+    V D W F   +   N  W L  
Sbjct: 233 LVSGDPDEVLDVEDFWVFEHGLKIPNSRWRLAG 265


>gi|168020464|ref|XP_001762763.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686171|gb|EDQ72562.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 428

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 49/129 (37%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
           T     MR+I      F   DFL E +      + ++ +G V  ++K     V +     
Sbjct: 267 TATAVAMREIRRHDPSFTFSDFLAEMQEEIRPTLRAYLKGDVPTLKKKCCREVLERCQAE 326

Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201
            S  +S    + + ++ I D++I    +  N+  I I    Q I  + DK   +I    +
Sbjct: 327 RSALESQGIFLSNEILHISDIEIKETKLLGNSPIIIINFQTQQIHCARDKAGNIIEGARD 386

Query: 202 IFGKVIDIW 210
               V   W
Sbjct: 387 DIHTVFYAW 395


>gi|187608373|ref|NP_001120395.1| translocase of inner mitochondrial membrane 44 [Xenopus (Silurana)
           tropicalis]
 gi|170284954|gb|AAI61105.1| LOC100145471 protein [Xenopus (Silurana) tropicalis]
          Length = 441

 Score = 78.0 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 67/176 (38%), Gaps = 4/176 (2%)

Query: 53  KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLN-EARNSY 111
              +   +   +       D I  LF   T +++V+ +I+ V  +FD   FL    R+  
Sbjct: 255 DESDNAFVRASRTITDKVSDLIGGLFSK-TEMSEVLTEILKVDPNFDKDKFLKLCERDII 313

Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171
             I+++   G +  ++       Y      +   K+      S ++ ID++ +    + E
Sbjct: 314 PNILEAMIRGDLDVLKDWCYEATYSQLAHPIQQAKAMGLQFNSKILDIDNIDLAMGKMME 373

Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
               + I    Q +    ++   ++  D +   +++ +W   R+    NP   W L
Sbjct: 374 QGPVLIITFQAQLVMVITNQKGDVVEGDRDKVLRMLYVWALCRDQDELNPYAAWRL 429


>gi|168056436|ref|XP_001780226.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668376|gb|EDQ54985.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 418

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 9/102 (8%)

Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI---------DDMK 163
            I ++   G   A+ +LV   V       L  R+     V   LVG            + 
Sbjct: 229 MINNALAAGDRTALRQLVTDNVLTAMKKELKHRELAWARVHWELVGPLKSIRTLQGRLIG 288

Query: 164 IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
           I   +++     +T+RIV     A+YDK   L++ DPE   +
Sbjct: 289 IDQKNMDTAFAQLTLRIVSTQRFAAYDKQGKLVAGDPEKEVE 330


>gi|78484559|ref|YP_390484.1| import inner membrane translocase, subunit Tim44 [Thiomicrospira
           crunogena XCL-2]
 gi|78362845|gb|ABB40810.1| Hypothetical protein; predicted membrane protein [Thiomicrospira
           crunogena XCL-2]
          Length = 306

 Score = 77.6 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 66/222 (29%), Gaps = 16/222 (7%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
             +L    I    FL L   L K+       +          +   R   T  +      
Sbjct: 100 IQLLDILLIALVAFL-LFSFLKKRQATMMQPAYSRESSPSSFEAASRQTTTQMRENHAPT 158

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
            D       IG+ L++    +      FD   F+  A+  +  I  ++       +    
Sbjct: 159 YDPYASGSLIGSGLSEQAESMTQKPDWFDEAGFMEAAKGHFVEIQKAWDALDSQELADYC 218

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              +       + T ++ E   +   +     + +  +I+ +   +++R           
Sbjct: 219 TPELMAALQSEMDTFQAGENLTEVEELN---AETVEMAIDGDYFIVSVRF---------- 265

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            +  +     ++     +IW  +R +     NW +   +  +
Sbjct: 266 -NGFIREDRNDVAHAFNEIWH-IRRLAAGEGNWQIAGIQQNQ 305


>gi|224123246|ref|XP_002319031.1| predicted protein [Populus trichocarpa]
 gi|222857407|gb|EEE94954.1| predicted protein [Populus trichocarpa]
          Length = 233

 Score = 77.2 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 18/161 (11%)

Query: 83  RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
            L      +    T +    F  EA   Y+ I      G   A+ K V  ++Y +  + +
Sbjct: 71  ELKNAYAIVKLRKTGYSKHKFYVEAIKLYKEINTLLANGDKTALRKAVTEKMYSELKNEI 130

Query: 143 STRKSNE----------------KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
             R+S                  + +++ L    ++ +  + + +  + +T+ I  +   
Sbjct: 131 KQRQSAWNMSKLYWEMIEPAVLIRTLRARLA--TEIGVDKSDLNKVFIQLTLEIKTKQKF 188

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
            +YD     ++ D      V +IW F +++      W L  
Sbjct: 189 EAYDSKGARVAGDKNKEILVREIWVFEKSLFHPGAYWRLCG 229


>gi|19483882|gb|AAH23454.1| Timm44 protein [Mus musculus]
          Length = 450

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 65/174 (37%), Gaps = 3/174 (1%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
           +   ++        D +  +       T +++V+ +I+ V   FD   FL++   +    
Sbjct: 265 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQCETDIIPN 324

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I+++   G++  ++       Y      +   K+      S ++ I ++ +    + E  
Sbjct: 325 ILEAMISGELDILKDWCYEATYSQLAHPIQQAKALGFQFHSRILDISNVDLAMGKMMEQG 384

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
             + +    Q +    +    +   DP+   +++ +W   R+    NP   W L
Sbjct: 385 PVLIVTFQAQVVMVIKNSKGEVYDGDPDKVQRMLYVWALCRDQEELNPYAAWRL 438


>gi|170763467|ref|NP_035722.2| mitochondrial import inner membrane translocase subunit TIM44
           precursor [Mus musculus]
 gi|84570125|gb|AAI10678.1| Timm44 protein [Mus musculus]
 gi|109730975|gb|AAI17524.1| Translocase of inner mitochondrial membrane 44 [Mus musculus]
 gi|109731467|gb|AAI17525.1| Translocase of inner mitochondrial membrane 44 [Mus musculus]
 gi|148690045|gb|EDL21992.1| translocase of inner mitochondrial membrane 44, isoform CRA_a [Mus
           musculus]
          Length = 452

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 65/174 (37%), Gaps = 3/174 (1%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
           +   ++        D +  +       T +++V+ +I+ V   FD   FL++   +    
Sbjct: 267 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQCETDIIPN 326

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I+++   G++  ++       Y      +   K+      S ++ I ++ +    + E  
Sbjct: 327 ILEAMISGELDILKDWCYEATYSQLAHPIQQAKALGFQFHSRILDISNVDLAMGKMMEQG 386

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
             + +    Q +    +    +   DP+   +++ +W   R+    NP   W L
Sbjct: 387 PVLIVTFQAQVVMVIKNSKGEVYDGDPDKVQRMLYVWALCRDQEELNPYAAWRL 440


>gi|6016369|sp|O35857|TIM44_MOUSE RecName: Full=Mitochondrial import inner membrane translocase
           subunit TIM44; Flags: Precursor
 gi|2351410|gb|AAB97624.1| translocase of inner mitochondrial membrane [Mus musculus]
          Length = 452

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 65/174 (37%), Gaps = 3/174 (1%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
           +   ++        D +  +       T +++V+ +I+ V   FD   FL++   +    
Sbjct: 267 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQCETDIIPN 326

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I+++   G++  ++       Y      +   K+      S ++ I ++ +    + E  
Sbjct: 327 ILEAMISGELDILKDWCYEATYSQLAHPIQQAKALGFQFHSRILDISNVDLAMGKMMEQG 386

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
             + +    Q +    +    +   DP+   +++ +W   R+    NP   W L
Sbjct: 387 PVLIVTFQAQVVMVIKNSKGEVYDGDPDKVQRMLYVWALCRDQEELNPYAAWRL 440


>gi|225848621|ref|YP_002728784.1| hypothetical protein SULAZ_0804 [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643113|gb|ACN98163.1| conserved hypothetical protein [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 293

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 6/130 (4%)

Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163
           LN A+N++  I  ++ EG + ++   +  R+Y   N  L   KS         V I + +
Sbjct: 167 LNLAKNAFIDIQKAWSEGNLSSVRNFLTDRMYLYLNSQLQDLKSKGLRNIIEDVKILNAE 226

Query: 164 IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV-RNIPPSNPN 222
           I++   E +   + + I  Q    + D +  ++  D +      + W FV + +     N
Sbjct: 227 IVHVEEEGDNKVVIVEIEAQAKDYTVDSNGNVVEGDKDNPVVFKEYWAFVGKAL-----N 281

Query: 223 WVLISTKLGE 232
           W L   +  +
Sbjct: 282 WKLDDIRQVQ 291


>gi|297836804|ref|XP_002886284.1| mitochondrial import inner membrane translocase subunit TIM44
           [Arabidopsis lyrata subsp. lyrata]
 gi|297332124|gb|EFH62543.1| mitochondrial import inner membrane translocase subunit TIM44
           [Arabidopsis lyrata subsp. lyrata]
          Length = 477

 Score = 76.8 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 60/170 (35%)

Query: 41  FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100
            S     K      D R I           +  +NE+F   T      ++I +    F  
Sbjct: 275 MSEPVVNKSQEIAEDVREIWETSDNPIVHKIQDMNEMFLKETDSASTYKEIRNRDPSFSL 334

Query: 101 KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160
            DF  E       +++++ EG V  ++K     V +     L+  +++     + L+ I 
Sbjct: 335 PDFAAEIEEVIRPVLNAYSEGDVETLKKYCSKEVIERCTAELTAYQTHGFFFDNKLLHIS 394

Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210
           D+++    +  ++  I  +   Q I    D++  +     +    V   W
Sbjct: 395 DVRVSVTKMMGDSPIIIAKFQTQEIYCVRDENGEIQEGGQDTIHTVYHEW 444


>gi|325191254|emb|CCA26040.1| Mitochondrial Protein Translocase (MPT) Family puta [Albugo
           laibachii Nc14]
          Length = 409

 Score = 76.5 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 64/156 (41%), Gaps = 18/156 (11%)

Query: 82  TRLNKVMRDIVSVYTDF-------DPKDF-LNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
           T +   +R+I     +F       D  +F L         ++D+F +G+   ++K     
Sbjct: 250 TSMGIAIREIRRAEPEFILEQWKEDIAEFVLPG-------VLDAFLKGRSRDLKKWFGEA 302

Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV-YITIRIVGQFISASYDKD 192
            Y   N ++  RKS    +  +++ ID++ +I AS E+     I +R   Q I+   +++
Sbjct: 303 AYNRINIAIRERKSEGLVMDPNVLEIDNVDVIEASAEDKQAPIILVRFRSQQINCIRNRE 362

Query: 193 NLLISSDPEIFGKVIDIWTFVR--NIPPSNPNWVLI 226
             ++    +       I+ F R  +       W ++
Sbjct: 363 GEIVEGAEDEVLAYYYIFAFQREYDESTERLRWRIV 398


>gi|242279221|ref|YP_002991350.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
           salexigens DSM 2638]
 gi|242122115|gb|ACS79811.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
           salexigens DSM 2638]
          Length = 312

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 76/230 (33%), Gaps = 23/230 (10%)

Query: 7   DSGDFLILLFAFITFFVFLQLRGVLGK----KTGNEKPFSGFFSGKYVFSKRDERGIITL 62
           +     +L++     F F + R   G     + GN +    +       +  D       
Sbjct: 101 NLLIIGLLVYLG---FKFFKSRS-RGTDDMYRQGNYQRGPDYSQPNQNNTNADPYARREQ 156

Query: 63  GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
                 D+L S     P      +     V++   FD ++FL+ A+  Y  +  S+    
Sbjct: 157 TAQNAWDHLSSKPSSQPAAGSAAQQSGPTVNIPAGFDEEEFLDGAKAVYTRLQKSWDSRD 216

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
           +  IE+   + V     + +  +   +     + V + + +++    E    ++T+    
Sbjct: 217 MADIEQFATAGV----VNEIKQQAKEDPGPSQTDVLMVNARLLEVKEEGGVNHVTVYYDV 272

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
                          S      +V ++W FV+ +   +  W L   +  E
Sbjct: 273 LLRE----------DSSQSQPSQVREVWHFVKPVGS-DGMWKLDGIQQLE 311


>gi|225438141|ref|XP_002278528.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 485

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 44/129 (34%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
           T      ++I      F   DF++E +     +++++ +G    ++K     V +     
Sbjct: 324 TAAAMSFKEIRRRDPSFSLPDFVSEVQEVIRPVLNAYIKGDAETLKKYCSPEVIERCKAE 383

Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201
               ++      + ++ I D+++    +   +  I +    Q +      D  +     +
Sbjct: 384 HGAYQTMGIIFDNKILHISDVEVRETKMMGTSPIIIVAFQTQQVYCVRSADGSIKEGGKD 443

Query: 202 IFGKVIDIW 210
               V   W
Sbjct: 444 TIHTVYYAW 452


>gi|87311137|ref|ZP_01093261.1| hypothetical protein DSM3645_18996 [Blastopirellula marina DSM
           3645]
 gi|87286228|gb|EAQ78138.1| hypothetical protein DSM3645_18996 [Blastopirellula marina DSM
           3645]
          Length = 707

 Score = 76.1 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 6/140 (4%)

Query: 84  LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
           ++  +  +      FD   F   A N++  I  ++ +  + +I   V   VY+ F+  +S
Sbjct: 114 IDSCLEALKESDPSFDLPQFKQRAENAFGKIQRAWSDQDLASIHAFVSDGVYERFSLQIS 173

Query: 144 TRKSNEKNVKSSLVGIDDMKIIN--ASIEENTVY--ITIRIVGQFISASYDK-DNLLISS 198
            +           V I  M+ I   AS  +   +  I++R+  +      D+    LI  
Sbjct: 174 EQHELGYRNVIEDVRILKMEPIEIIASRNDQNAFEVISLRVQARGKDYRVDRTTGKLIPG 233

Query: 199 DPEIFGKVIDIWTFVRNIPP 218
                    ++WTF+R    
Sbjct: 234 SKSN-ESFSEVWTFLRRRGA 252


>gi|297744147|emb|CBI37117.3| unnamed protein product [Vitis vinifera]
          Length = 484

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 44/129 (34%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
           T      ++I      F   DF++E +     +++++ +G    ++K     V +     
Sbjct: 323 TAAAMSFKEIRRRDPSFSLPDFVSEVQEVIRPVLNAYIKGDAETLKKYCSPEVIERCKAE 382

Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201
               ++      + ++ I D+++    +   +  I +    Q +      D  +     +
Sbjct: 383 HGAYQTMGIIFDNKILHISDVEVRETKMMGTSPIIIVAFQTQQVYCVRSADGSIKEGGKD 442

Query: 202 IFGKVIDIW 210
               V   W
Sbjct: 443 TIHTVYYAW 451


>gi|148690048|gb|EDL21995.1| translocase of inner mitochondrial membrane 44, isoform CRA_d [Mus
           musculus]
          Length = 321

 Score = 76.1 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 65/174 (37%), Gaps = 3/174 (1%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
           +   ++        D +  +       T +++V+ +I+ V   FD   FL++   +    
Sbjct: 136 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQCETDIIPN 195

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I+++   G++  ++       Y      +   K+      S ++ I ++ +    + E  
Sbjct: 196 ILEAMISGELDILKDWCYEATYSQLAHPIQQAKALGFQFHSRILDISNVDLAMGKMMEQG 255

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
             + +    Q +    +    +   DP+   +++ +W   R+    NP   W L
Sbjct: 256 PVLIVTFQAQVVMVIKNSKGEVYDGDPDKVQRMLYVWALCRDQEELNPYAAWRL 309


>gi|73540138|ref|YP_294658.1| import inner membrane translocase, subunit Tim44 [Ralstonia
           eutropha JMP134]
 gi|72117551|gb|AAZ59814.1| Mitochondrial import inner membrane translocase, subunit Tim44
           [Ralstonia eutropha JMP134]
          Length = 327

 Score = 75.7 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 71/224 (31%), Gaps = 16/224 (7%)

Query: 8   SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSK-RDERGIITLGKGK 66
           S    ++L A + F     +R   G    N++P               +    +   +  
Sbjct: 117 SFLSNLILIALVAFVAIWLIRKFRGGSQRNQQPAYAGAGNAGGMGDLGNSAEPMLREQTP 176

Query: 67  KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
                + +              +    V  DFD + FL  A+  +  +  ++  G +  I
Sbjct: 177 SPAASNPVMPAAGAAAVAADAAQQPWGVPADFDTEAFLRNAKVHFVRLQAAWDAGNLDDI 236

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
            +     ++ +    L+ R +  +  K+ +V + + +++      N    ++R  G    
Sbjct: 237 REFTTPEMFAEIKMDLAERGA--EVNKTDVVTL-EAQLLGIESAPNQHLASVRFSG---- 289

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
              ++         E      ++W   + +      W+L   + 
Sbjct: 290 MIRERTG-------EAAQPFAEVWNLAKPV-SGTGGWLLAGIQQ 325


>gi|302790822|ref|XP_002977178.1| hypothetical protein SELMODRAFT_176052 [Selaginella moellendorffii]
 gi|300155154|gb|EFJ21787.1| hypothetical protein SELMODRAFT_176052 [Selaginella moellendorffii]
          Length = 432

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 6/150 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
           T      ++I S    F   DF+ E +     I+ ++ +G    + K V   V +     
Sbjct: 271 TATAAAFKEIRSRDPTFSFPDFVLEVQEDIRPILTAYLKGDYDTLRKKVCKEVVERCRAE 330

Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201
               +S    V + ++ I ++++  + +  N   I I    Q      D+   +     +
Sbjct: 331 HRALQSQGLYVDTKILYISELEVRESKLIGNEPVIIISFQTQQNYCVRDEFGHIREGSKD 390

Query: 202 IFGKVIDIWTF------VRNIPPSNPNWVL 225
               ++  W          +     P W L
Sbjct: 391 DIRTILYAWAMQQVSLDEMDPDEFTPRWRL 420


>gi|296532615|ref|ZP_06895317.1| import inner membrane translocase, subunit Tim44 [Roseomonas
           cervicalis ATCC 49957]
 gi|296267060|gb|EFH12983.1| import inner membrane translocase, subunit Tim44 [Roseomonas
           cervicalis ATCC 49957]
          Length = 243

 Score = 75.3 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 45/129 (34%), Gaps = 11/129 (8%)

Query: 109 NSYEA----IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164
            ++EA    I  ++       + +L    +   F   L    +     ++S V ++   +
Sbjct: 119 QAFEALLRDINAAWSRRDEAGLARLATPEMASYFAQDLRDLDARGWRNETSDVRLEQGDL 178

Query: 165 INA--SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222
             A    + +   + +R     +  +YD    ++  DP       ++WTF R        
Sbjct: 179 SEAWREADGDYATVAMRFS--LVDVTYDTQGRVVEGDPATRSTATELWTFRRRRGGP--- 233

Query: 223 WVLISTKLG 231
           W L + +  
Sbjct: 234 WQLSAIQQA 242


>gi|316968065|gb|EFV52405.1| conserved hypothetical protein [Trichinella spiralis]
          Length = 468

 Score = 74.9 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 62/165 (37%), Gaps = 4/165 (2%)

Query: 64  KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
            GK  +  D++ + F     +++V+ +I  +  +FD  DF  + +  +  I ++   G+ 
Sbjct: 295 GGKLSEFFDNLLDAFLDNCSVSEVLTEICKIDPNFDVTDFRKQCQRDF--IPNASNRGEE 352

Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
             +        +      LS  K         L  ID+++II   I +    + +    +
Sbjct: 353 EILRDWCSEGAFNQLIALLSECKRAGYKHTFRLFDIDNVEIITGKITDMGPVLLVAFQTR 412

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN--PNWVLI 226
            +      D   +    +    +  +W F R++   N    W ++
Sbjct: 413 QLRCIQTPDGKFVFGTTDDPLLITHLWAFCRDVDEPNSKAAWRVV 457


>gi|153829224|ref|ZP_01981891.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|148875262|gb|EDL73397.1| conserved hypothetical protein [Vibrio cholerae 623-39]
          Length = 95

 Score = 74.1 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 47/109 (43%), Gaps = 15/109 (13%)

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
            ++  I + V   +++D    L   ++N +  + + V   D +I+ A  + N   ++++ 
Sbjct: 1   NQLETIREYVSPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQF 56

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            G++  A        I  +      + D+W   R++   N  W+++  +
Sbjct: 57  SGRYRDAV-----EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 94


>gi|298715200|emb|CBJ27872.1| Import inner membrane translocase subunit TIM44, mitochondrial
           precursor [Ectocarpus siliculosus]
          Length = 602

 Score = 74.1 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 53/156 (33%), Gaps = 5/156 (3%)

Query: 76  ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRV 134
           +     +     +R++  +   F  +D+  + +  +    + +F  G V  +++      
Sbjct: 436 DSLTAESDEGIGVRELRRLDPSFSVEDWKRDIQELFLPEFMSAFLRGDVKLLKQWTGEAC 495

Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQFISASYDKD 192
           Y         RK++   +   ++ I   +++    +       I ++ + Q I+   +K 
Sbjct: 496 YNKLASEAKQRKADGMVLDPHVLDIRQGEVLAIKADAGKANPTIALQFMCQQINCVRNKK 555

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLI 226
             ++    +       I  F R          W ++
Sbjct: 556 GEILEGAEDDIRATYYILAFQREFNDDEAELRWRVV 591


>gi|186475144|ref|YP_001856614.1| import inner membrane translocase subunit Tim44 [Burkholderia
           phymatum STM815]
 gi|184191603|gb|ACC69568.1| import inner membrane translocase subunit Tim44 [Burkholderia
           phymatum STM815]
          Length = 331

 Score = 73.8 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 78/230 (33%), Gaps = 27/230 (11%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
           F  M +   +I L AF+  ++    R  +G+K   + P     S           G    
Sbjct: 125 FAGMMANMIVIALIAFVAIWLI---RKFVGRKRNAQTPAYAGGSPTL------NAGGTGY 175

Query: 63  GKGKKKDNLDSINELFPIGTRLNKV-MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
            +  +     + + L P G  L    +    +V   FD + FL  A+  +  +  ++  G
Sbjct: 176 SQEPRYTAPPTGSYLGPQGNPLTTPDIAATPAVPAGFDSEAFLRNAKVYFVRLQAAWDAG 235

Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
            +  I +     ++ +    LS+R +  +  ++ +V + D  ++      +    ++R  
Sbjct: 236 NMDDIREFTTPEMFAEVRVDLSSRGA--EKNQTDVVKL-DADLLGVEDRGSEYLASVRFH 292

Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           G             +    E      +IW   +        W+L   +  
Sbjct: 293 GLIR--------ETVGGSAE---PFEEIWNLSKRTGEG---WLLAGIQQA 328


>gi|260361390|ref|ZP_05774455.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|308111106|gb|EFO48646.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 229

 Score = 73.8 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 12/122 (9%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           IL+   I F +F  +RG+LG K G  N++     F G     ++                
Sbjct: 96  ILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNASKFEQPNMQNFEQQPNTNAGG 155

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
                    +                 FD   F+N +R  Y  +  ++   ++  IE+ V
Sbjct: 156 FTGFGAQTDVPHNYP----------PGFDQAAFINGSREHYRILQGAWNHNQLDTIEEYV 205

Query: 131 DS 132
             
Sbjct: 206 SP 207


>gi|303278680|ref|XP_003058633.1| mitochondrial protein translocase family [Micromonas pusilla
           CCMP1545]
 gi|226459793|gb|EEH57088.1| mitochondrial protein translocase family [Micromonas pusilla
           CCMP1545]
          Length = 335

 Score = 73.8 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 13/145 (8%)

Query: 96  TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNE-KNVKS 154
             F  + FL+ A+  Y  + +    G    +  L               R       V+ 
Sbjct: 159 QAFTKEGFLDTAKEVYAEVNELIARGDHAKLRHLCSGSAASHVKREDKARSQGGWDRVEW 218

Query: 155 SLV-GIDDMKIINASI-----EENT--VYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
            L+  +   +++ A +     +        T++   +   A+YDK   L++ DPE    V
Sbjct: 219 KLLEHVQTPRVLQARLCSPAGDPAVSWAQFTVQFKTRETFAAYDKRGNLVAGDPEEVLVV 278

Query: 207 IDIWTFVRNIPPS----NPNWVLIS 227
            D W     +  S    N  W L +
Sbjct: 279 EDAWVLEHGVGESNSKKNARWRLAA 303


>gi|91806216|gb|ABE65836.1| mitochondrial import inner membrane translocase subunit TIM44
           [Arabidopsis thaliana]
          Length = 474

 Score = 73.8 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 65/188 (34%), Gaps = 11/188 (5%)

Query: 23  VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82
           VF +L       +G  +P       K      D R I           +  +NE F   T
Sbjct: 265 VFKRL-------SGMSEPVVN----KSQEIAEDVREIWETSDNPIVHKIQDMNEKFLKET 313

Query: 83  RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
                 ++I S    F   DF  E     + +++++ EG V  ++K     V +      
Sbjct: 314 DSASTYKEIRSRDPSFSLPDFAAEIEEVIKPVLNAYSEGDVETLKKYCSKEVIERCTAER 373

Query: 143 STRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI 202
           +  +++     + L+ I ++ +    +  ++  I  +   Q I    D++  +     + 
Sbjct: 374 TAYQTHGVLFDNKLLHISEVSVSVTKMMGDSPIIIAKFQTQEIYCVRDENGEIQEGGQDT 433

Query: 203 FGKVIDIW 210
              V   W
Sbjct: 434 IHTVYHEW 441


>gi|18399377|ref|NP_565473.1| ATTIM44-1; protein-transmembrane transporting ATPase [Arabidopsis
           thaliana]
 gi|20198086|gb|AAD25651.2| putative mitochondrial inner membrane translocating protein
           [Arabidopsis thaliana]
 gi|330251926|gb|AEC07020.1| translocase inner membrane subunit 44-1 [Arabidopsis thaliana]
          Length = 472

 Score = 73.8 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 65/188 (34%), Gaps = 11/188 (5%)

Query: 23  VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82
           VF +L       +G  +P       K      D R I           +  +NE F   T
Sbjct: 263 VFKRL-------SGMSEPVVN----KSQEIAEDVREIWETSDNPIVHKIQDMNEKFLKET 311

Query: 83  RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
                 ++I S    F   DF  E     + +++++ EG V  ++K     V +      
Sbjct: 312 DSASTYKEIRSRDPSFSLPDFAAEIEEVIKPVLNAYSEGDVETLKKYCSKEVIERCTAER 371

Query: 143 STRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI 202
           +  +++     + L+ I ++ +    +  ++  I  +   Q I    D++  +     + 
Sbjct: 372 TAYQTHGVLFDNKLLHISEVSVSVTKMMGDSPIIIAKFQTQEIYCVRDENGEIQEGGQDT 431

Query: 203 FGKVIDIW 210
              V   W
Sbjct: 432 IHTVYHEW 439


>gi|316958066|gb|EFV47264.1| conserved hypothetical protein [Trichinella spiralis]
          Length = 168

 Score = 73.8 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 55/147 (37%), Gaps = 3/147 (2%)

Query: 83  RLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
            +++V+ +I  +  +FD  DF  + +  +   ++++   G+   +        +      
Sbjct: 11  SVSEVLTEICKIDPNFDVTDFRKQCQRDFIPNVIEASNRGEEEILRDWCSEGAFNQLIAL 70

Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201
           LS  K         L  ID+++II   I +    + +    + +      D   +    +
Sbjct: 71  LSECKRAGYKHTFRLFDIDNVEIITGKITDMGPVLLVAFQTRQLRCIQTPDGKFVFGTTD 130

Query: 202 IFGKVIDIWTFVRNIPPSN--PNWVLI 226
               +  +W F R++   N    W ++
Sbjct: 131 DPLLITHLWAFCRDVDEPNSKAAWRVV 157


>gi|307822898|ref|ZP_07653128.1| import inner membrane translocase subunit Tim44 [Methylobacter
           tundripaludum SV96]
 gi|307735673|gb|EFO06520.1| import inner membrane translocase subunit Tim44 [Methylobacter
           tundripaludum SV96]
          Length = 319

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 68/228 (29%), Gaps = 28/228 (12%)

Query: 14  LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73
           L+F  I  F+  +      KK G  +      +    +                    D+
Sbjct: 110 LIFGGIA-FLLYKWFAA--KKAGAAQRPVYNRTADNSYQDTASSDHEPEPTQANPAGFDT 166

Query: 74  INELFPIGTRLNKVMRDIVSVY---------TDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
            + LF             V             DFD + FL+ A+ ++  +  ++ E  + 
Sbjct: 167 -DILFKKDNNATPSYAQPVQQDAGFASAVVPKDFDQQAFLSGAKIAFTELQKAWDERDLA 225

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
            I  L   +V+ +  D L    +  +     L    + +++      + +   +      
Sbjct: 226 EIRGLTTDKVFAEIQDQLKASDAANRTEILRL----EAELLEVREVGSELEAVVLFDTIM 281

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
                         + +   +V ++W F++      P W L   +  E
Sbjct: 282 RE----------DGNAQA-AQVREVWHFIKPKVSIQPKWYLDGIQQLE 318


>gi|167525988|ref|XP_001747328.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774163|gb|EDQ87795.1| predicted protein [Monosiga brevicollis MX1]
          Length = 437

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 61/173 (35%), Gaps = 3/173 (1%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDF-LNEARNSYEA 113
           +   ++  G     D L               V+ ++  +   FD   F L+  +    A
Sbjct: 252 ESDNVLVRGARSVTDTLTDRLGQVFENDESGAVLAEVQRLDPTFDRLAFTLHCEKKVIPA 311

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           ++++F  G    +++      + +    +  R+++    ++ ++ I D++ I A   +  
Sbjct: 312 VLEAFIAGDKEVLKEWCAEVCFNNMAAQIDQREASGIIYEARILDIADVEYITAQRMDEG 371

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWV 224
             +      Q      D+   ++    +   + + ++   RN    +P   W 
Sbjct: 372 PVLVFVFNAQQTHCIRDRTGAVVEGSEDNIQQSMYMFAMRRNPAIFDPKLAWQ 424


>gi|254230446|ref|ZP_04923825.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|151937047|gb|EDN55926.1| conserved hypothetical protein [Vibrio sp. Ex25]
          Length = 209

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 8/122 (6%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+   I F +F  +RG+LG K G+        +     SK ++  +    +    +N  
Sbjct: 96  ILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNFEQQPNTNNGG 155

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
                       N            FD   F+N +R  Y  +  ++   ++  IE+ V  
Sbjct: 156 FGGFGAQTDVPHNYP--------PGFDQAAFINGSREHYRILQGAWNHNQLKTIEEYVSP 207

Query: 133 RV 134
            +
Sbjct: 208 SL 209


>gi|74318798|ref|YP_316538.1| hypothetical protein Tbd_2780 [Thiobacillus denitrificans ATCC
           25259]
 gi|74058293|gb|AAZ98733.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 273

 Score = 73.4 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 63/189 (33%), Gaps = 25/189 (13%)

Query: 43  GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKD 102
            FF  +       +   +  G   +  +           T               FD   
Sbjct: 110 RFFMRRNAPQPAMQYAGVPPGHNPRLHDATPAGATAGPATGFP----------PGFDAAG 159

Query: 103 FLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDM 162
           F  EA+ ++  +  +F  G +  +       ++ + +  ++ R       +++ V + D 
Sbjct: 160 FAREAKLNFIRLQAAFDAGNLDDLRAFTSPEIFAELSMQMAER---GDVQQTTDVMMLDA 216

Query: 163 KIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222
           +++ AS E+N   +++R  GQ      + +             + ++W   + I      
Sbjct: 217 EVLEASDEDNRHVVSVRFTGQ----VRENEGA-------APVALDEVWHLTKPIHGGG-G 264

Query: 223 WVLISTKLG 231
           WV+   + G
Sbjct: 265 WVIAGIQQG 273


>gi|237756615|ref|ZP_04585131.1| import inner membrane translocase, subunit Tim44
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691229|gb|EEP60321.1| import inner membrane translocase, subunit Tim44
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 296

 Score = 73.0 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I  ++  G +  ++  +  R+YQ   + L   K+           I++++I++   E + 
Sbjct: 180 IQKAWSNGDLSPVKNFLTDRMYQYLEEQLKELKAKGLRNIVENPKIENLEIVHVEEEGDN 239

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV-RNIPPSNPNWVL 225
             + +R+    I  + D D  ++  D        + W FV + +     NW L
Sbjct: 240 KVVIVRLDASAIDYTVDSDGNIVEGDKYNPVSFTEYWAFVGKAL-----NWKL 287


>gi|47216426|emb|CAG01977.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 405

 Score = 73.0 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 64/180 (35%), Gaps = 9/180 (5%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEA 113
           +    +        D +          T +++V+ +IV     FD   FL +  ++    
Sbjct: 214 ESDNALIRASRAVTDRVTDFLGGLFSKTEMSEVLTEIVKADPTFDKDSFLKQCEKDIIPN 273

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I+++   G++  ++       Y      +   K+     +S ++ ID++ +    + E  
Sbjct: 274 ILEAMIRGELDVLKDWCYEATYSQLAHPIQQAKALGLRFQSKVLDIDNIDLAMGKMMEQG 333

Query: 174 VYITIRIVGQFISASYDKDNLLISSDP------EIFGKVIDIWTFVRNIPPSNPN--WVL 225
             + I    Q I         ++  DP          +++ +W   R+    NP+  W L
Sbjct: 334 PVLIITFQAQVIMVIRSPKGDIVEGDPVSTVTSGKVMRMMYVWALCRDQEELNPSAAWRL 393


>gi|89092751|ref|ZP_01165704.1| hypothetical protein MED92_15633 [Oceanospirillum sp. MED92]
 gi|89083263|gb|EAR62482.1| hypothetical protein MED92_15633 [Oceanospirillum sp. MED92]
          Length = 294

 Score = 73.0 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 71/222 (31%), Gaps = 26/222 (11%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
              +    I   +FL  + +  ++   ++P       +       +  I    + ++++ 
Sbjct: 96  IQFMDLLLIAGVIFLIFKIMSMRRQ-AQQPTYANNGPQ-------QYEIKPHAEQQQREA 147

Query: 71  LDSINELFPIGTRLNKVMRDIVSVY-TD-FDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
               +  F      N    +         F+ + FL  A++ +  +  ++       I  
Sbjct: 148 APEQDSNFKPMPSFNSGWGNSEEFELPSWFNRESFLEGAKSHFVTLQKAWDASNWDEIRT 207

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
                ++Q        R     +  + +V +   ++ N   +++ V ++I   G      
Sbjct: 208 YTSDELFQALQQ---ERAKYPADQTTEVVSVM-AEVANFIDQKSEVIVSINFYGWL---- 259

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                     + E   +  + W   R++   N +W ++  + 
Sbjct: 260 --------KENSEETTEFNETWHLSRDMSVENADWFIVGIEQ 293


>gi|298292408|ref|YP_003694347.1| import inner membrane translocase subunit Tim44 [Starkeya novella
           DSM 506]
 gi|296928919|gb|ADH89728.1| import inner membrane translocase subunit Tim44 [Starkeya novella
           DSM 506]
          Length = 331

 Score = 72.6 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 80/232 (34%), Gaps = 14/232 (6%)

Query: 3   FIKMDSGDFLILLFAFIT-FFVFLQLRGVLG-KKTGNEKPFSGFFSGKYVFSKRDERGII 60
           F  + S   ++ L   I    + ++L  V+G  ++ N+  ++G      +  +    G  
Sbjct: 111 FSGLGSLAGILGLLLQIALVVIVVRL--VMGWMRSRNQPSYAGGARPDPMQREALNGGAP 168

Query: 61  TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
             G       +         G       R I    +DFD   F        E I  ++  
Sbjct: 169 MGGAPMGGAPMGGAGAAPRAGFGTGPRGRPIQLQGSDFDT--F----ERRLEEIQTAYGR 222

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
                + +L    +     + L   + +    +   V +    +  A  E+ + Y T+ +
Sbjct: 223 ADRDTLLRLATPEMGGYLREELDQLERDGLENRLGDVKLLQGDLSEAWAEDGSEYATVAM 282

Query: 181 VGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
             +      +K    ++  DP    +V++ WTFVR        W+L + + G
Sbjct: 283 RYELTDVIVEKATGRIVQGDPSRKEQVVEFWTFVR---SPGGEWLLSAIQQG 331


>gi|260830091|ref|XP_002609995.1| hypothetical protein BRAFLDRAFT_247571 [Branchiostoma floridae]
 gi|229295357|gb|EEN66005.1| hypothetical protein BRAFLDRAFT_247571 [Branchiostoma floridae]
          Length = 257

 Score = 72.6 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 68/181 (37%), Gaps = 12/181 (6%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
           +   ++        D +  +       T +++V+ +I+ V   F  + FL +   +    
Sbjct: 67  ESDNVVVRASRLITDKVGDLVGGLFSKTEMSEVLTEIIKVDPSFTKEAFLKQCETDIIPN 126

Query: 114 IVDSFFEGKVHAIEKLV-------DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN 166
           I+++   G +  ++          D +++       S  K+   +  S ++ ID++ +  
Sbjct: 127 ILEAMIRGDLEILKDWCFEAVSNHDQKLHASSCQ--SQGKALGCHFDSKILDIDNLDLAT 184

Query: 167 ASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWV 224
             + E    + I    Q I    +    +   DP    KVI +W   R+    +P  +W 
Sbjct: 185 GKVMEQGPVLVISFTAQQIMVVRNAKGEVTEGDPNKVLKVIYVWALCRDQEEFDPRASWK 244

Query: 225 L 225
           L
Sbjct: 245 L 245


>gi|82702119|ref|YP_411685.1| import inner membrane translocase, subunit Tim44 [Nitrosospira
           multiformis ATCC 25196]
 gi|82410184|gb|ABB74293.1| import inner membrane translocase, subunit Tim44 [Nitrosospira
           multiformis ATCC 25196]
          Length = 295

 Score = 72.2 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 77/222 (34%), Gaps = 22/222 (9%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
               +L+ A +   +F  +R +   +  +      +   +   +        T   G   
Sbjct: 94  NMMDVLMLAALIGGIFFVMRMLRKPRQEHSARPMQYSGMQGTSTDHGVTPGATAATGSAP 153

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
           +     + + P+    N     I +   DF  + FL  A+ S+  +  +     ++ I +
Sbjct: 154 ETTPRASAVAPVSGTGN-----IPA---DFQVEPFLRNAKTSFIRLQAANDARDLNDIRE 205

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
                +Y + +  ++ R    +  ++ ++ I+  +++    E++    ++R  GQ     
Sbjct: 206 YTTPEMYAEISMQINER--GNEPQRTDVLAIN-AQLLEVVTEKDMAIASVRFNGQLR--- 259

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                    S         +IW   +++   +  W+L   + 
Sbjct: 260 --------ESPQSTPEAFDEIWHVQKDLKDPDAVWLLAGIQQ 293


>gi|20197991|gb|AAM15344.1| hypothetical protein [Arabidopsis thaliana]
          Length = 499

 Score = 71.8 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 43/120 (35%)

Query: 91  IVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEK 150
           +  +   F   DF++E + +   +++++ +G    ++K     + +          S   
Sbjct: 347 VHKIQESFSLPDFVSEIQEAIRPVLNAYSKGDAKTLKKYCSKELIERCTAEHRAFTSQGY 406

Query: 151 NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210
                L+ + ++ I    +   T  I +R   Q I    D+D  +     +    V   W
Sbjct: 407 FFDHKLLHVSEVDIQETKMMGTTPVIIVRFQTQEIFCVRDQDGKIKEGGQDTIHTVYYDW 466


>gi|188591179|ref|YP_001795779.1| hypothetical protein RALTA_A0388 [Cupriavidus taiwanensis LMG
           19424]
 gi|170938073|emb|CAP63057.1| conserved hypothetical protein, COG4395 [Cupriavidus taiwanensis
           LMG 19424]
          Length = 327

 Score = 71.8 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 74/229 (32%), Gaps = 29/229 (12%)

Query: 8   SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
           S   LI L AF   ++  + RG         K  +         +    R    + +G+ 
Sbjct: 120 SNLILIALVAFAAIWLIRKFRGS--------KRAAQPAYAGAGGAPNLGRNAEPMFRGEP 171

Query: 68  KDNLDSINELFPI------GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
                      P+            V +    V  DFD + FL  A+  +  +  ++  G
Sbjct: 172 TPVSSGSQSASPVLPASAAPVAAGAVAQQPWGVPADFDTESFLRNAKVHFVRLQAAWDAG 231

Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
            +  I +     ++ +    L+ R +  +  K+ +V + + +++           ++R  
Sbjct: 232 NLDDIREFTTPEMFAEIKMDLAERGA--EVNKTDVVTL-EAQLLGIESSPAQHLASVRFS 288

Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           G       +K         E      ++W   + +   N  W+L   + 
Sbjct: 289 G----MIREKAG-------EAAQPFGEVWNLAKPV-SGNGGWLLAGIQQ 325


>gi|13475963|ref|NP_107533.1| hypothetical protein mll7160 [Mesorhizobium loti MAFF303099]
 gi|14026723|dbj|BAB53319.1| mll7160 [Mesorhizobium loti MAFF303099]
          Length = 328

 Score = 71.8 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 59/205 (28%), Gaps = 21/205 (10%)

Query: 33  KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIV 92
           +    + P           + R E       +      +    +    G  L     +I 
Sbjct: 139 RTQSAQGPAPALAGAGNAQASRFENRAAAQQQTASSFTIPGFGDGSG-GASLAADSEEIR 197

Query: 93  SVYTDFDPKDFLNEARNSYEA----IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148
              TD D          +++     I ++F      A+ +     +    ++ L+     
Sbjct: 198 LAQTDLD----------AFQQLLTDIQEAFGREDHAALRRATTPEMVSYLSEELADNAQK 247

Query: 149 EKNVKSSLVGIDDMKIINA--SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
               + S + +    I  +    + +     +R   + +         ++  D +   + 
Sbjct: 248 GLRNEVSDITLLQADIAESWRENDRDYATAALRYESRDVMRERGS-GKVVEGDEDHPTET 306

Query: 207 IDIWTFVRNIPPSNPNWVLISTKLG 231
            ++WTF R       NW L + +  
Sbjct: 307 TELWTFTRQNGS---NWKLSAIQQA 328


>gi|302763825|ref|XP_002965334.1| hypothetical protein SELMODRAFT_83588 [Selaginella moellendorffii]
 gi|300167567|gb|EFJ34172.1| hypothetical protein SELMODRAFT_83588 [Selaginella moellendorffii]
          Length = 413

 Score = 71.8 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 44/128 (34%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
           T      ++I S    F   DF+ E +     I+ ++ +G    + K V   V +     
Sbjct: 249 TATAAAFKEIRSRDPTFSFPDFVLEVQEDIRPILTAYLKGDYDTLRKKVCKEVVERCRAE 308

Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201
               +S    V + ++ I ++++  + +  N   I I    Q      D+   +      
Sbjct: 309 HRALQSQGLYVDTKILYISELEVRESKLIGNEPVIIISFQTQQNYCVRDEFGHIREGSKA 368

Query: 202 IFGKVIDI 209
               +  I
Sbjct: 369 SIDDIRTI 376


>gi|145590075|ref|YP_001156672.1| import inner membrane translocase, subunit Tim44 [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048481|gb|ABP35108.1| import inner membrane translocase, subunit Tim44 [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 303

 Score = 71.8 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 72/222 (32%), Gaps = 26/222 (11%)

Query: 8   SGDFLILLFAFITFFVFLQL-RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
           S     LL A I  FV + L R +L          SG      V      R  +     +
Sbjct: 103 SSLITGLLIAMIAGFVIMFLIRKIL-------PALSGAGQNTNVPPAAVPRSNLDQTPRQ 155

Query: 67  KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
                 + N    +     K    I +    FD + FL  A+  +  +  ++  G + A+
Sbjct: 156 DPGFAPAANAYSGVSAADEKFESTIPA---GFDERTFLENAKQYFVNLQKAWDLGDLAAL 212

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
            +     ++      L+ R  +    ++ ++ I D K++     E   + +++  G    
Sbjct: 213 GEFTTPEMFATIQQDLAGRSDSAN--QTDVLSI-DAKLLGIETSEAHYFCSVQFKG---- 265

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
              ++     S          +IW   + +      WVL   
Sbjct: 266 MIREQPGAPAS-------DFSEIWNLSKPVNGPG-GWVLAGI 299


>gi|56753483|gb|AAW24945.1| SJCHGC05805 protein [Schistosoma japonicum]
          Length = 417

 Score = 71.4 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 7/163 (4%)

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVH 124
            D + S+   F I   L +V+ ++  +   F+ + F+   R  +  I   +++     + 
Sbjct: 245 TDKVSSLFGGFKINNELQEVLDEVTKMDPSFNLESFIRYCR--FVVIPNVLEAIVRVDLP 302

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
            ++       +      L   K      +S ++ I ++ +    I E    + I    Q 
Sbjct: 303 ILQDWCHEAPFNVLATPLRQIKELGYVSESRILDIHNVDVQMGKIMEQGPVLIITFQAQQ 362

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
           I    DK+  +   DP    +V  +W   R+    +P   W L
Sbjct: 363 IHCIRDKNGTVHEGDPNKVLRVTHVWALCRDQSEMHPLAAWRL 405


>gi|78355820|ref|YP_387269.1| hypothetical protein Dde_0773 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218225|gb|ABB37574.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 301

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 77/222 (34%), Gaps = 26/222 (11%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           ILLF  +   +FL LR +  ++ G  +     +     +       +        +   D
Sbjct: 103 ILLFGGV---IFLILRMM--RRRGAPR-GEPAYQAGGAYQGGASHDVRQHDNTMYRQAQD 156

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
             + L   G+           V   FD ++FL  AR+ Y  + +S+    +  I      
Sbjct: 157 GWSGLRSAGSGSPSSAAPAPEVPAGFDTEEFLQGARSVYTRLQNSWDNRDLDDIRTFTSP 216

Query: 133 RVYQDFNDSLSTRKSNEKNV--KSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
            V+ +       R++ +     ++ L+ I+  +++    E + +  T+           D
Sbjct: 217 SVFDEI-----HRQAQDDPQPSRTELLLIN-ARVLEVKEETDGMLATVYFDVLMR---ED 267

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
                   +PE    V ++W F R     +  W L   +  E
Sbjct: 268 ASG----GNPEQ---VREVWHFHR--ATPDAMWRLDGIQQLE 300


>gi|114328920|ref|YP_746077.1| transporter [Granulibacter bethesdensis CGDNIH1]
 gi|114317094|gb|ABI63154.1| transporter [Granulibacter bethesdensis CGDNIH1]
          Length = 326

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 3/120 (2%)

Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171
           + +  ++ +  +  +  +    +   FN+ L+   S   +   + V +    +  A  E 
Sbjct: 209 KEVQAAWTDRNLQQLGSISTPEMVGYFNEQLTALASRGLHNTVTNVTLQKGDLSEAWREG 268

Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
              Y T+ ++   I A+YD    ++  D        + WTFVR        W+L + +  
Sbjct: 269 TLEYATVAMLFSMIDATYDSSGRVVEGDASQLQTATEFWTFVR---SPGGPWILSAIQQA 325


>gi|312797306|ref|YP_004030228.1| hypothetical protein RBRH_02101 [Burkholderia rhizoxinica HKI 454]
 gi|312169081|emb|CBW76084.1| Hypothetical protein RBRH_02101 [Burkholderia rhizoxinica HKI 454]
          Length = 367

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 63/199 (31%), Gaps = 28/199 (14%)

Query: 36  GNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVY 95
           G E P           +    +   T G G+     D  + +    + L     D+ +V 
Sbjct: 191 GFESPSGASLRQYDASAAAPSQLPATGGMGQAGVAPDGQSRVAADPSVL-----DVPAVP 245

Query: 96  TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN---- 151
             FD   F+ +A+ ++  +  ++  G +  I +     ++ +      +R    +     
Sbjct: 246 AGFDADAFIRQAKVAFVRLQAAWDAGNLDDIREFTTPEMFAEIKLDFDSRHGENRTDVVQ 305

Query: 152 VKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWT 211
           + + LVG++D          N    ++R  G       +                 ++W 
Sbjct: 306 LNADLVGVEDRG-------GNEYVASVRFHG----LLRETQGAAAE-------PFAEMWN 347

Query: 212 FVRNIPPSNPNWVLISTKL 230
             RN       WVL   + 
Sbjct: 348 LSRNARSGE-GWVLAGIQQ 365


>gi|226480686|emb|CAX73440.1| Import inner membrane translocase subunit TIM44, mitochondrial
           precursor [Schistosoma japonicum]
          Length = 417

 Score = 70.7 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 7/148 (4%)

Query: 83  RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDFN 139
            L +V+ ++  +   F+ + F+   R  +  I   +++     +  ++       +    
Sbjct: 260 ELQEVLDEVTKMDPSFNLESFIRYCR--FVVIPNVLEAIVRVDLPILQDWCHEAPFNVLA 317

Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199
             L   K      +S ++ I ++ +    I E    + I    Q I    DK+  +   D
Sbjct: 318 TPLRQIKELGYVSESRILDIHNVDVQMGKIMEQGPVLIITFQAQQIHCIRDKNGTVHEGD 377

Query: 200 PEIFGKVIDIWTFVRNIPPSNP--NWVL 225
           P    +V  +W   R+    +P   W L
Sbjct: 378 PNKVLRVTHVWALCRDQSEMHPLAAWRL 405


>gi|222149642|ref|YP_002550599.1| hypothetical protein Avi_3590 [Agrobacterium vitis S4]
 gi|221736624|gb|ACM37587.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 270

 Score = 70.7 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 4/118 (3%)

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
             ++ E    A+ ++          + L    +     +   V +    +  A  E    
Sbjct: 156 QKAYAEEDYSALRRITTPEAMSYLAEELGEHATKGVKNEVRDVHLLQGDLAEAWREGTVD 215

Query: 175 YITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           Y T+ +  + I    D+    ++  DP+   + +++WTFVR        W + + +  
Sbjct: 216 YATVAMRYEAIDVMRDRATGAVVDGDPDHPQQSVEVWTFVRRPGSG---WSISAIQSA 270


>gi|167585475|ref|ZP_02377863.1| import inner membrane translocase, subunit Tim44 [Burkholderia
           ubonensis Bu]
          Length = 334

 Score = 70.7 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 70/228 (30%), Gaps = 21/228 (9%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
           F  M S   +I L A I  ++  +      ++  NE P               +      
Sbjct: 124 FASMMSNLIVIALLAAIGIWLIRKFMN---RRRSNE-PAYSVGGSASASGNYSQGPSFQA 179

Query: 63  GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
           G G    N                     + V   FD + FL  A+  +  +  ++ +G 
Sbjct: 180 GNGSSYANEAQSVFGGGTAAAAAGAAAAPLQVPAGFDTEAFLRSAKVYFVRLQAAWDQGN 239

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
           +  I +     ++ +    L +R    +  ++ +V + D +++           ++R  G
Sbjct: 240 LADIREFTTPEMFAEIKIDLDSR--GNEANQTDVVQL-DAELVAIEDRGIEQSASVRFHG 296

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                  +  N   +          ++W   ++       W+L   + 
Sbjct: 297 ----LIREAANAPAA-------PFDEVWNLAKSGGQG---WLLAGIQQ 330


>gi|149927075|ref|ZP_01915333.1| hypothetical protein LMED105_09477 [Limnobacter sp. MED105]
 gi|149824296|gb|EDM83516.1| hypothetical protein LMED105_09477 [Limnobacter sp. MED105]
          Length = 340

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 63/231 (27%), Gaps = 40/231 (17%)

Query: 16  FAFITFFVF---LQLRGVLGKKTGNEKPFSGFFSGK-------YVFSKRDERGIITLGKG 65
              I   VF     +R + G++    +P                  S       +     
Sbjct: 131 MLMIAAAVFAVMFLVRMLRGQQAAKPRPAYSAPGATGSGQNSYRQASTNPINDPVPGMGA 190

Query: 66  KKKD-------NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
            + D       N  + +   P  T        +  +   FD  +F+N A+  +  +   F
Sbjct: 191 PRNDQGFGQFGNASAFDAPMPAATP-------VKDLPAGFDEANFVNSAKKFFVTMQGVF 243

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
            +G V  + +     V       +  R      V  + V   D ++I    + +    T+
Sbjct: 244 DKGDVDGLREYCSDDVVDHLRAEIEAR---GNAVNRTDVVTLDAQLIGFETDVDEQIATV 300

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
              G                      ++ ++W   R +      WVL    
Sbjct: 301 AFTGMLR-----------EEQDAAAEEINELWIMSRPVSGGG--WVLSGIH 338


>gi|78706782|ref|NP_001027194.1| CG11779, isoform C [Drosophila melanogaster]
 gi|16183135|gb|AAL13638.1| GH18370p [Drosophila melanogaster]
 gi|71854565|gb|AAZ52531.1| CG11779, isoform C [Drosophila melanogaster]
          Length = 430

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 58/152 (38%), Gaps = 1/152 (0%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
           +    +        D +  +       T L++ M ++V +   FD KDFL +   +    
Sbjct: 274 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 333

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I++S   G +  ++       +    + +   K     + S ++ I+++++    + E  
Sbjct: 334 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGVYLDSKILDIENIELAMGKVMEQG 393

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
             + I    Q I    D+ + ++  DPE    
Sbjct: 394 PVLIITFQAQQIMCVRDQKSQVVEGDPEKPKP 425


>gi|217978356|ref|YP_002362503.1| import inner membrane translocase subunit Tim44 [Methylocella
           silvestris BL2]
 gi|217503732|gb|ACK51141.1| import inner membrane translocase subunit Tim44 [Methylocella
           silvestris BL2]
          Length = 329

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 9/130 (6%)

Query: 109 NSYEA----IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164
           +++E     +  ++ +  ++A+  L    +   F + L          K S V      +
Sbjct: 202 SAFEQRLFAVQKAYSDEDMNALRALSTPEMASYFAEELGENARKGVVNKLSKVEFLQGDL 261

Query: 165 INA--SIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNP 221
             A      +   + +R     I  + D+    L++ DP    +  +IWTF R       
Sbjct: 262 AEAWSEANGDYASVAMRFS--MIDQTLDRATGRLVAGDPSAPQQATEIWTFTRRSGGGAQ 319

Query: 222 NWVLISTKLG 231
           +W L   +  
Sbjct: 320 DWKLSGIQQA 329


>gi|219115361|ref|XP_002178476.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410211|gb|EEC50141.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 510

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/189 (12%), Positives = 75/189 (39%), Gaps = 7/189 (3%)

Query: 45  FSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFL 104
              +    + D +      +      + S+ +     +   + ++++  +  +F  +D+ 
Sbjct: 311 AKARVDHIREDAKEAWETSQNPWVYRVSSVYDTLTAESPETRAVKELRQLDPEFTLEDWK 370

Query: 105 -NEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163
            +   ++   I+  F EG+++ ++  +   V++     ++ R+     + ++L+GI + +
Sbjct: 371 ADVVEHTLPQIMQWFLEGRINQLKPWLGEGVFKRLAAEMTAREKEGVQIDTNLLGIMNSE 430

Query: 164 IINA---SIEENTVYITIRIVGQFISAS-YDKDNLLISSDPEIFGKVIDIWTFVR--NIP 217
           I+      +   +  I +  + Q I+     KD+ ++    +       +  F R  +  
Sbjct: 431 ILAIEPDEVNRGSPIIILHFMAQQINCVKKKKDDEIVEGAEDDIRANSYVTAFQREYDEE 490

Query: 218 PSNPNWVLI 226
               NW ++
Sbjct: 491 KGELNWKIV 499


>gi|90418181|ref|ZP_01226093.1| conserved hypothetical protein with Tim44-like domain [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337853|gb|EAS51504.1| conserved hypothetical protein with Tim44-like domain [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 203

 Score = 70.3 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 24/214 (11%)

Query: 24  FLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83
           F + R             S   +     ++R      T   G     + SI     +G  
Sbjct: 6   FFRSRN-----------PSPARANGGGHTERRAYEEPTQPAGNGSFRIPSIGSGAGLGGG 54

Query: 84  LNKVMRDIVSVYTDFDPKDFLNEARNSYEA----IVDSFFEGKVHAIEKLVDSRVYQDFN 139
                    +     D     +   +++E     +  +F      A+  +    +     
Sbjct: 55  SAATGAATAAAEPS-DEIGITDADLDTFEQKLHEVQAAFSREDYAALRTITTPEIMSYLA 113

Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISASYDKD-NLLI 196
           + LS   ++ +      V ++   I  A  E +T    + +R     I    D+    ++
Sbjct: 114 EELSENATSGRKNDVLDVKLEQGDIAEAWREGDTEYASLAMRYSS--IDVMRDRTTGEVV 171

Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             DP+   +  ++WTFVR+       W L + + 
Sbjct: 172 EGDPDTPTETTELWTFVRDKGGE---WKLSAIQE 202


>gi|332702904|ref|ZP_08422992.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332553053|gb|EGJ50097.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 343

 Score = 69.9 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 63/217 (29%), Gaps = 25/217 (11%)

Query: 16  FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
            A +  F F++ R V           S   S     + R         +     +  S +
Sbjct: 151 LAGLMLFRFIRSRKV-----------SQASSAAMAGNDRYAYAAAQADRSSPAASAGSWD 199

Query: 76  ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
            L     + +       ++    D  +FL+ A+  Y  +  S+    +  I       V 
Sbjct: 200 SLRSASAQASSAPEAGPAMPEGLDEAEFLSGAKALYARLQASWNRRDLKDIRAFTSPEVL 259

Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
                 +  + + +     + V + + +++    +     IT+                 
Sbjct: 260 ----AEIERQAAEDPTPDKTDVLMLNARVLEVRRDGQQTVITVLYDALLRE--------- 306

Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
                    +V ++W   R+     P W+L   +  E
Sbjct: 307 -DQSASQPTQVREVWHIRRDESAPRPEWILEGIQQLE 342


>gi|224000153|ref|XP_002289749.1| tim44-like protein [Thalassiosira pseudonana CCMP1335]
 gi|220974957|gb|EED93286.1| tim44-like protein [Thalassiosira pseudonana CCMP1335]
          Length = 252

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 64/186 (34%), Gaps = 12/186 (6%)

Query: 53  KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSY 111
           K D        +        S+ +     +      R +  +  DF  +++  +   ++ 
Sbjct: 56  KEDAAEAWETSQNPWVYRASSVYDTLTAESEFAAASRQLQKLDPDFTLENWKRDVVEHTL 115

Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171
             I+  F EG++  ++  +   VY      +  RK     + ++++ I + +I+   +  
Sbjct: 116 PQIMKLFLEGRIQELKPWLGEAVYNRLAAEVRARKKEGVQMDTNILAIMNAEILACELAG 175

Query: 172 NTVYIT--------IRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPS--N 220
           ++V +         +  + Q I     K  + ++    +       +  F R        
Sbjct: 176 SSVNVDKGDDPILLLHFMCQQIHCVRKKKIDDIVEGSEDDIRANSYVVAFQREYNEEKME 235

Query: 221 PNWVLI 226
            NW ++
Sbjct: 236 LNWKIV 241


>gi|159483173|ref|XP_001699635.1| hypothetical protein CHLREDRAFT_141592 [Chlamydomonas reinhardtii]
 gi|158281577|gb|EDP07331.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 311

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 22/151 (14%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
            F          ++Y+A+  +   G +   E  V  +        ++ R  +  +V   +
Sbjct: 160 GFSKSALQQRVLDAYKAVNAALAAGDMALAEPYVTEQTGLRLAGEVARRGRS--SVTWRM 217

Query: 157 VG---IDDMKIINASIEEN--------TVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
           V      D+K+++ +I  N            T RI  + + A YD    L++ DP+   +
Sbjct: 218 VREPKPSDIKLVHGTIVSNPLKQGKLHFAQWTARIPSRQVVAVYDNRGKLLAGDPDKELE 277

Query: 206 VIDIWTFVRNI---------PPSNPNWVLIS 227
           V+D W F R I          PS   W L+ 
Sbjct: 278 VVDHWVFERPILKAWIAPRPGPSGAEWRLVE 308


>gi|194212576|ref|XP_001497048.2| PREDICTED: similar to Import inner membrane translocase subunit
           TIM44, mitochondrial [Equus caballus]
          Length = 488

 Score = 69.9 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 5/130 (3%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138
           T +++V+ +I+ V   FD   FL +  N  + I   +++   G++  ++       Y   
Sbjct: 297 TEMSEVLTEILRVDPAFDKDRFLQQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 354

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
              +   K+      S ++ ID++ +    + E    + I    Q +    +    ++  
Sbjct: 355 AHPIQQAKALGLQFHSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMVVKNPKGEVVEG 414

Query: 199 DPEIFGKVID 208
           DP + G  +D
Sbjct: 415 DPALLGPRVD 424


>gi|170691438|ref|ZP_02882603.1| import inner membrane translocase subunit Tim44 [Burkholderia
           graminis C4D1M]
 gi|170143643|gb|EDT11806.1| import inner membrane translocase subunit Tim44 [Burkholderia
           graminis C4D1M]
          Length = 332

 Score = 69.5 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 76/219 (34%), Gaps = 19/219 (8%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           I++ A +       +R  LG+K    +P    ++G          G     +  +     
Sbjct: 128 IIVIALLAMIGIWLIRRFLGRKRDTSQP---AYAGHSPSLNSGATGYTQEPQEPRYTAPP 184

Query: 73  SINELFPIGTRLNK-VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
           + + L P G  L    +    SV   FD + FL  A+  +  +  ++  G +  I +   
Sbjct: 185 TGSYLEPQGNPLTTPSVNATPSVPAGFDSEAFLRNAKVYFVRLQAAWDVGNIDDIREFTT 244

Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
             ++ +    LS+R +     ++ +V ++   ++      N  + ++R            
Sbjct: 245 PEMFAEVRVDLSSRGAG--TNQTDVVQLN-ADLLGVEERANEYFASVRFS---------- 291

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             L+  +        +++W   +        W+L   + 
Sbjct: 292 -GLIREAPGAAAEPFVEVWNLSK-ANRPGEGWLLAGIQQ 328


>gi|212702059|ref|ZP_03310187.1| hypothetical protein DESPIG_00061 [Desulfovibrio piger ATCC 29098]
 gi|212674574|gb|EEB35057.1| hypothetical protein DESPIG_00061 [Desulfovibrio piger ATCC 29098]
          Length = 300

 Score = 69.5 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 63/219 (28%), Gaps = 30/219 (13%)

Query: 14  LLFAFITFFVFLQL--RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71
           +L   I  FV L+L  R                       +     G +     +     
Sbjct: 108 ILLLGILLFVGLKLFARS------------RSKAQPAPAGAGNAPMGGMEPPLQRNDTAA 155

Query: 72  DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
              + L       N     ++ +  DFD ++FL  A+ +Y  +  ++    ++ I +   
Sbjct: 156 AGWDTLSSQDNTYNSQPEVVIPMPADFDAEEFLRGAKMAYNRLQAAWDNRDLNDIAQFAS 215

Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
             V       L+      K      + + + ++++   E+      +             
Sbjct: 216 PAVMDAVRQQLAEETEPSKTE----ILLVNAQLLSVVNEDKEQRAQVYFDVLMRERP--- 268

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                  D      V +IW FVR +      W L   + 
Sbjct: 269 -------DQPTPSNVREIWHFVRELDGG--TWKLDGIQQ 298


>gi|94986557|ref|YP_594490.1| hypothetical protein LI0112 [Lawsonia intracellularis PHE/MN1-00]
 gi|94730806|emb|CAJ54168.1| uncharacterized protein conserved in bacteria [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 313

 Score = 69.5 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 81/226 (35%), Gaps = 31/226 (13%)

Query: 13  ILLFAFITFFVFLQL---RGVLGKKTGNEKPFSG--FFSGKYVFSKRDERGIITLGKGKK 67
           ++L A +  ++  +L   R    K T NE   +   + + + + S+       TL     
Sbjct: 111 LILIAGL-VYLAYRLFFKR----KITSNEASVTNSLYATQQPLTSEMPIPRSTTLSGTGW 165

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
           +             +      + I +    DF+ ++FL  A+ +Y  +  ++    +  I
Sbjct: 166 ESLKSQHTTYSADVSN-----QAITTNIPIDFNEEEFLKGAKAAYVRLNAAWDNRDLEDI 220

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
           ++        +    ++       N +++ + + +  +++    E+   +++       +
Sbjct: 221 QQFTTPGFLNELQQQITE----NPNPETTEIMLVNASVVDVKKIEDEELVSVYF-----N 271

Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
               ++        E   +V +IW FVR       +W L   +  E
Sbjct: 272 VLLKENQ-----SQESPIEVREIWHFVRP-ASGEGSWKLDGIQQVE 311


>gi|94309317|ref|YP_582527.1| import inner membrane translocase, subunit Tim44 [Cupriavidus
           metallidurans CH34]
 gi|93353169|gb|ABF07258.1| import inner membrane translocase, subunit Tim44 [Cupriavidus
           metallidurans CH34]
          Length = 329

 Score = 69.1 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 68/221 (30%), Gaps = 18/221 (8%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           ++LF  I       +R   G     ++P      G             TL   +   N  
Sbjct: 122 VILFGVIALIAMWLIRKFRGGSARTQQPSYAGMGGNGSNYGGPSHAEPTLRTAEPVGNGG 181

Query: 73  SINELFPIGTRLNKVMRDIVSVY---TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
           + +     G         +   +    DFD + FL  A+  Y  +  ++  G    I + 
Sbjct: 182 AASNPVMGGAAAAATAAAVQQPWGVPADFDTESFLRNAKVHYVRLQAAWDAGNQDDIREF 241

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
               ++ +    LS R S  +  K+ +V + D +++           ++R  G       
Sbjct: 242 TTPEMFAEIKMDLSERGS--EVNKTDVVTL-DAQLLGIESTPAQHIASVRFSG----MIR 294

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           +K                ++W   +     N  W+L   + 
Sbjct: 295 EKAGEP-------AQPFGEVWNLAK-ATSGNGGWLLAGIQQ 327


>gi|209521830|ref|ZP_03270508.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
           H160]
 gi|209497734|gb|EDZ97911.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
           H160]
          Length = 333

 Score = 69.1 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 72/221 (32%), Gaps = 22/221 (9%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           +++ A I   V   +R    + TG ++  +         S                    
Sbjct: 132 VIVIALIAIVVIWLIR----RFTGRKRDATQPDYAGTAPSLNANSTGYMQEPRYTAPPTG 187

Query: 73  SINELFPIGTRLNK-VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
           +   L P G  L    +    SV   FD + FL  A+  +  +  ++  G V  I +   
Sbjct: 188 A--YLEPQGNPLTTPSIGAPPSVPAGFDSEAFLRNAKVYFVRLQAAWDAGNVEDIREFTT 245

Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
             ++ +    L++R +     ++ +V ++  +++      N  + ++R            
Sbjct: 246 PEMFAEVRVDLASRGTQPN--QTDVVQLN-AELLGVEERANESFASVRFS---------- 292

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
             L+           +++W   R        W+L   +  E
Sbjct: 293 -GLIREEPGAAAEPFVEVWNLSRANRAGE-GWLLAGIQQVE 331


>gi|113866475|ref|YP_724964.1| hypothetical protein H16_A0446 [Ralstonia eutropha H16]
 gi|113525251|emb|CAJ91596.1| hypothetical membrane spanning protein [Ralstonia eutropha H16]
          Length = 329

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 79/237 (33%), Gaps = 40/237 (16%)

Query: 8   SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
           S   LI L AF   ++  + RG      G+++     ++G         R    + +G+ 
Sbjct: 117 SNLILIALVAFAAIWLIRKFRG------GSKRTQQPAYAGAGNAP-NLGRSAEPMFRGEP 169

Query: 68  KDNLDSINELFPIGTRLNKVM--------------RDIVSVYTDFDPKDFLNEARNSYEA 113
                 ++   P G   N V+              +    V  DFD + FL  A+  +  
Sbjct: 170 TP----VSSGSPAGPAANTVLPAASAAPVAADAVAQQPWGVPADFDTEAFLRNAKVHFVR 225

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           +  ++  G +  I +     ++ +    L+ R +  +  K+ +V + + +++        
Sbjct: 226 LQAAWDAGNLDDIREFTTPEMFAEIKMDLADRGA--EVNKTDVVTL-EAQLLGIESAAAQ 282

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
              ++R              ++     E      ++W   +        W+L   + 
Sbjct: 283 HIASVRFS-----------GMIREKSGEAAQPFGEVWNLAKP-ASGTGGWLLAGIQQ 327


>gi|193620416|ref|XP_001947189.1| PREDICTED: mitochondrial import inner membrane translocase subunit
           TIM44-like [Acyrthosiphon pisum]
          Length = 409

 Score = 69.1 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 66/176 (37%), Gaps = 11/176 (6%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
           D   I+        D L S+         ++ V+ ++  V  DF   +F+ +     + I
Sbjct: 228 DSDHILARATRSVTDTLSSVFHNAE----MSDVVTELCRVEPDFSLVNFIRQCET--DII 281

Query: 115 ---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171
              +++     +  ++       Y+  +  ++  +         ++ + ++ ++   + E
Sbjct: 282 PNVLEAIAREDLIILKDWCFEAPYRVLSHPVTEHRQKGHQTYCKVLDVHNVDVVTGKLME 341

Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
           +   + I    Q I    D + L+I  DP    +V+  W   R++   NP   W L
Sbjct: 342 HGPVLIISFSAQQIMYIKDVNGLIIEGDPHTVIRVMYTWAMCRDVNEVNPRAAWKL 397


>gi|290562045|gb|ADD38419.1| Probable 39S ribosomal protein L45, mitochondrial [Lepeophtheirus
           salmonis]
          Length = 340

 Score = 68.8 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 13/145 (8%)

Query: 89  RDIVSVYTDFDPKDFLNEARNSYEAIVDSF----FEGKVHAIEKLVDSRVYQDFNDSLST 144
           R I S   DFD K FL +A+  Y   + +       G+   + K V  + Y +   ++  
Sbjct: 145 RKIRSYEDDFDQKTFLLQAQEIY---IKAHKSLVENGEDECLLKYVTEKAYPEMVHNVRR 201

Query: 145 RKSNEKNVKS----SLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
           +    + +KS    ++V I    ++    +     +T+R   Q   A YD+   LI    
Sbjct: 202 KTLRWEFIKSLEPPTIVHIRTQDLLQ--KQNKFAQVTVRFHTQQTLAVYDRFGRLIHGSE 259

Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225
            +   V++   F R++     +W L
Sbjct: 260 VVAKDVLEYVVFERHLASIYESWRL 284


>gi|188996487|ref|YP_001930738.1| import inner membrane translocase subunit Tim44
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931554|gb|ACD66184.1| import inner membrane translocase subunit Tim44
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 295

 Score = 68.8 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 47/113 (41%), Gaps = 6/113 (5%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I  ++  G +  ++  +  R+YQ   + L   K+           I++++I++   E + 
Sbjct: 179 IQKAWSNGDLSPVKNFLTDRMYQYLEEQLKDLKAKGLRNIVENPKIENLEIVHVEEEGDN 238

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV-RNIPPSNPNWVL 225
             + +R+    I  + D +  ++ +D        + W FV + +     NW L
Sbjct: 239 KVVIVRLDASAIDYTVDSNGNIVEADKYNPVSFTEYWAFVGKAL-----NWKL 286


>gi|217968675|ref|YP_002353909.1| import inner membrane translocase subunit Tim44 [Thauera sp. MZ1T]
 gi|217506002|gb|ACK53013.1| import inner membrane translocase subunit Tim44 [Thauera sp. MZ1T]
          Length = 294

 Score = 68.8 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 74/227 (32%), Gaps = 28/227 (12%)

Query: 7   DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
              +F+++L      F   +L             F    +       RD +         
Sbjct: 95  GFANFVMILLLAAAAFFVFRL------------IFRRGANAAAQQPARDLQYAGAPAGAA 142

Query: 67  KKDNLDSINELFP-IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
           ++          P  G  ++       ++ + FD + F  +A+ ++  +  +   G +  
Sbjct: 143 QQARPQQFEAGRPLAGGSVSAQSGLDKALASGFDAEGFARQAKLNFIRLQAANDAGNLDD 202

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           + +     V+ +    ++ RK   +   + +V ++   I  A  E +   +++R  G   
Sbjct: 203 LREFTTPEVFAELCMQVNERKGAGQR--TDVVELNAQVIDVAE-ENDRYVVSVRFSGLLR 259

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
                       + PE      +IW   + +  S   W++   +  +
Sbjct: 260 --------EQAEAAPEA---FDEIWHLSKPLAGSG-GWLIAGIQQSQ 294


>gi|225712958|gb|ACO12325.1| Probable 39S ribosomal protein L45, mitochondrial precursor
           [Lepeophtheirus salmonis]
          Length = 340

 Score = 68.8 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 13/145 (8%)

Query: 89  RDIVSVYTDFDPKDFLNEARNSYEAIVDSF----FEGKVHAIEKLVDSRVYQDFNDSLST 144
           R I S   DFD K FL +A+  Y   + +       G+   + K V  + Y +   ++  
Sbjct: 145 RKIRSYEDDFDQKTFLLQAQEIY---IKAHKSLVENGEDECLLKYVTEKAYPEMVHNVRR 201

Query: 145 RKSNEKNVKS----SLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
           +    + +KS    ++V I    ++    +     +T+R   Q   A YD+   LI    
Sbjct: 202 KTLRWEFIKSLEPPTIVHIRTQDLLQ--KQNKFAQVTVRFHTQQTLAVYDRFGRLIHGSE 259

Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225
            +   V++   F R++     +W L
Sbjct: 260 VVAKDVLEYVVFERHLASIYGSWRL 284


>gi|50085732|ref|YP_047242.1| hypothetical protein ACIAD2665 [Acinetobacter sp. ADP1]
 gi|49531708|emb|CAG69420.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter sp. ADP1]
          Length = 340

 Score = 68.4 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 68/228 (29%), Gaps = 32/228 (14%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKK---TGNEKPFSGFFSGKYVF-----SKRDERGIITL 62
             I+L A I FF+F +     G K    GN  P++   +G         + R   G    
Sbjct: 136 IWIVLIAAIAFFIFRR----FGAKKKLAGN-NPYAPNNAGGSTPFSTSTTPRSNAGADNT 190

Query: 63  GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
               +     +     P GT  +     +       +P  FL  AR  +  I        
Sbjct: 191 NIFGQSVGGGAAPTAAPFGTAYSNSGNQLPD---GTEPAAFLRIARQRFNHIQSVNSASN 247

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
           +  I + +   +Y      +   +  +    +    ++   + + S E     +++R   
Sbjct: 248 IEEIRRYLTPDLYASMYSDIMANQDQDV---AEFSNLN-AMVADTSTENGQYIVSVRF-- 301

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                       +            ++W FV+    +   W +   + 
Sbjct: 302 ---------TGTVSEDLNSQPQPFSEVWHFVKPAGSTE-EWKVAGIQQ 339


>gi|194910892|ref|XP_001982246.1| GG11153 [Drosophila erecta]
 gi|190656884|gb|EDV54116.1| GG11153 [Drosophila erecta]
          Length = 361

 Score = 68.4 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 21/209 (10%)

Query: 28  RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83
           RGVL  +   E+PF    +G     YV  + D +  I    G K+       E     ++
Sbjct: 94  RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQKL-----EFLEKKSK 148

Query: 84  LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
               +R I S   +F   DF  EA++ Y            + I + V  R Y +   ++ 
Sbjct: 149 SLMAVRKIRSYDENFSSDDFGAEAQDIYIQAHTHMAAKDKYKIREFVSERCYPEMMHNVK 208

Query: 144 TRKSNEKNVKSSLV-GIDDMKIINASI------EENTVYITIRIVGQFISASYDKDNLLI 196
                 K ++   +  ++  ++++A +      E     +T+R   Q + A YD+   L+
Sbjct: 209 D-----KTIRWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLM 263

Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
                I   V++   F ++I      W L
Sbjct: 264 HGSEIITKDVLEYVVFEKHISNEYGKWRL 292


>gi|171464177|ref|YP_001798290.1| import inner membrane translocase subunit Tim44 [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193715|gb|ACB44676.1| import inner membrane translocase subunit Tim44 [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 303

 Score = 68.4 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 72/223 (32%), Gaps = 26/223 (11%)

Query: 7   DSGDFLILLFAFITFFVFLQL-RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
            S     LL A +  FV + + R +L          S    G  + S   +R  I     
Sbjct: 102 SSSLITGLLIAMLAGFVIMFVIRKLL-------PSLSSAGQGPNLSSNGMQRTGIDQAPR 154

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
           ++     + N    +          +      FD + FL   +  +  +  ++ +G + +
Sbjct: 155 QEPAFTPAANAFGGVSAEPEPFQSTLP---PGFDKQTFLENVKQYFVTLQKAWDQGDLAS 211

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           + +     ++      L+ R     + ++ +V I+  +++     +   + +++  G   
Sbjct: 212 LREFTTPEMFATIQQDLAGRTDG--SNQTDVVTIN-AQLLGIETADGHYFCSVQFSG--- 265

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
               +      S          +IW   + +      WVL   
Sbjct: 266 -MIRELQGAPAS-------DFSEIWNLSKPVEGLG-GWVLAGI 299


>gi|307111739|gb|EFN59973.1| hypothetical protein CHLNCDRAFT_133085 [Chlorella variabilis]
          Length = 434

 Score = 68.4 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 64/191 (33%), Gaps = 35/191 (18%)

Query: 24  FLQLRGV-LGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82
           F ++RG+ LG         +  FS     ++       T          D+++ L   G 
Sbjct: 239 FARMRGLNLG--------ANPVFSKGREAAESIRERWETSDSPLVHRIQDAVDSLQTEGE 290

Query: 83  RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
           +  + +R+I +    FD   FL   R   + +V ++ E                      
Sbjct: 291 Q-ARALREIRARDPSFDMVAFLRGLRADVQTVVKAYLESD-------------------- 329

Query: 143 STRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI 202
                       +L+   ++++++    E    + ++   Q I+ + D    ++   P+ 
Sbjct: 330 ----EGGLVPDPTLLDTSEVELVDIKWLEEEPIVVVQFTCQQINCTRDSFGNVVDGKPDE 385

Query: 203 F-GKVIDIWTF 212
              +V   W +
Sbjct: 386 VHRRVAGWWVY 396


>gi|21355709|ref|NP_651072.1| mitochondrial ribosomal protein L45 [Drosophila melanogaster]
 gi|29611874|sp|Q9VCX3|RM45_DROME RecName: Full=Probable 39S ribosomal protein L45, mitochondrial;
           Short=L45mt; Short=MRP-L45; Flags: Precursor
 gi|7300891|gb|AAF56032.1| mitochondrial ribosomal protein L45 [Drosophila melanogaster]
 gi|17945151|gb|AAL48635.1| RE09223p [Drosophila melanogaster]
 gi|220947926|gb|ACL86506.1| mRpL45-PA [synthetic construct]
 gi|220957222|gb|ACL91154.1| mRpL45-PA [synthetic construct]
          Length = 361

 Score = 68.4 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 21/209 (10%)

Query: 28  RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83
           RGVL  +   E+PF    +G     YV  + D +  I    G K+       E     ++
Sbjct: 94  RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQKL-----EFLEKKSK 148

Query: 84  LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
               +R I S   +F   DF  EA++ Y            + I + V  R Y +   ++ 
Sbjct: 149 SLMAVRKIRSYDENFSSDDFGAEAQDIYIQAHTHMAAKDKYKIREFVSERCYPEMMHNVK 208

Query: 144 TRKSNEKNVKSSLV-GIDDMKIINASI------EENTVYITIRIVGQFISASYDKDNLLI 196
                 K ++   +  ++  ++++A +      E     +T+R   Q + A YD+   L+
Sbjct: 209 D-----KTIRWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLM 263

Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
                I   V++   F ++I      W L
Sbjct: 264 HGSEIITKDVLEYVVFEKHISNEYGKWRL 292


>gi|295675463|ref|YP_003603987.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
           CCGE1002]
 gi|295435306|gb|ADG14476.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
           CCGE1002]
          Length = 334

 Score = 68.4 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 72/221 (32%), Gaps = 22/221 (9%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           +++ A I   V   +R    + TG ++  +         S                    
Sbjct: 133 VIVIALIAMVVIWLIR----RFTGRKRDAAQPAYAGTAPSLNTRGTDYIQEPRYTAPPTG 188

Query: 73  SINELFPIGTRLNK-VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
           S   L P G  L    +    SV   FD + FL  A+  +  +  ++  G +  I +   
Sbjct: 189 S--YLEPQGNPLTTPSLGATPSVPAGFDSEAFLRNAKVYFVRLQAAWDVGNIDDIREFTT 246

Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
             ++ +    L+ R + +   ++ +V ++  +++         + ++R            
Sbjct: 247 PEMFAEVRVDLTARGTQQN--QTDVVQLN-AELLGVEERATEYFASVRFS---------- 293

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
             L+  +        +++W   +        W+L   +  E
Sbjct: 294 -GLIREAPGAAAEPFVEVWNLTKANRAGE-GWLLAGIQQVE 332


>gi|158425088|ref|YP_001526380.1| hypothetical protein AZC_3464 [Azorhizobium caulinodans ORS 571]
 gi|158331977|dbj|BAF89462.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 335

 Score = 68.4 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 47/132 (35%), Gaps = 9/132 (6%)

Query: 104 LNEAR-NSYEA----IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG 158
           L  A  +++E     I  ++     + + +LV   +   F + L          + + V 
Sbjct: 207 LKGADFDAFEKLLSDIQAAYSREDRNKLAELVTPEILGYFEEELRANAERGVRNQVNDVK 266

Query: 159 IDDMKIINASIEENTVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRNIP 217
           +    +  A  E    Y T+ +  +      D+    L +   +   +  ++WTF+R   
Sbjct: 267 LLQGDLSEAWREGQFEYATVALRYEARDTMRDRTTGALAAGSTDAPSQSTEVWTFIRLRG 326

Query: 218 PSNPNWVLISTK 229
                W L + +
Sbjct: 327 QP---WKLSAIQ 335


>gi|118785408|ref|XP_314650.3| AGAP008539-PA [Anopheles gambiae str. PEST]
 gi|116127723|gb|EAA10193.3| AGAP008539-PA [Anopheles gambiae str. PEST]
          Length = 418

 Score = 68.4 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 57/179 (31%), Gaps = 12/179 (6%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNS---- 110
           +   +         D +  +       T L+  + ++  +   F+ K FL          
Sbjct: 232 ESENVAIRTSRALTDKVSQVMGNLFSKTELSAALTEVCRIDPSFEAKQFLQFCERHVIPN 291

Query: 111 -YEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
             E+I+     G++  +        Y      +          +S L+ I+++++    +
Sbjct: 292 VLESIL----RGELDVLRDWCFESAYSVIATPIVQGLEAGCRFESKLLDIENVELAMGQV 347

Query: 170 EENTVYITIRIVGQFISASYDKDN-LLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
            E    + +    Q I    +     +I  DPE   +    W   R+    NP   W +
Sbjct: 348 MEQGPVLIVTFQAQQIVCVREGTGAAVIEGDPEKVFRCHHAWVLCRDPSELNPQAAWRI 406


>gi|319784935|ref|YP_004144411.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317170823|gb|ADV14361.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 327

 Score = 68.0 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 46/118 (38%), Gaps = 4/118 (3%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           + ++F      A+ + V   +    ++ L+         + + + +    I  +  E+  
Sbjct: 213 VQEAFGREDHAALRRAVTPEMVSYLSEELADNAQKGLRNEVTDITLLQADIAESWREDER 272

Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            Y T  +  +    + ++    +++ D +   +  ++WTFVR       NW L + + 
Sbjct: 273 DYATAALRYESRDVTRERASGKIVAGDDDHPTETTELWTFVRENGS---NWKLSAIQA 327


>gi|283851351|ref|ZP_06368633.1| import inner membrane translocase subunit Tim44 [Desulfovibrio sp.
           FW1012B]
 gi|283573301|gb|EFC21279.1| import inner membrane translocase subunit Tim44 [Desulfovibrio sp.
           FW1012B]
          Length = 309

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 58/199 (29%), Gaps = 25/199 (12%)

Query: 33  KKTGNEKP-FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDI 91
           ++T +E P  +  +    V   R+                       P G ++       
Sbjct: 132 RRTASEGPSMARTYEAAPVPPVREPLREAAANGWSNLGASPQAGASAPAGPQVPAG---- 187

Query: 92  VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151
                 FD  DFL  A+  +  +  S+    +  I           F + +  + + +  
Sbjct: 188 ------FDVDDFLTGAKALFGRLQKSWSARDLADIAAFSTP----AFMEDVRKQAAADPT 237

Query: 152 VKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWT 211
              + V + D K++    +  T   +                   +  PE    V ++W 
Sbjct: 238 PTPTDVLLVDAKLLEVRSQGTTTIASAYFDTLLR-------EDPKAGQPEQ---VREVWH 287

Query: 212 FVRNIPPSNPNWVLISTKL 230
           FVR        W L + + 
Sbjct: 288 FVRRNDTPGDTWRLDAIQQ 306


>gi|306840266|ref|ZP_07473040.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO2]
 gi|306289793|gb|EFM60975.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO2]
          Length = 342

 Score = 67.6 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 71/228 (31%), Gaps = 12/228 (5%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M      + + A I  FV   +R    ++           +  +  S+         G+G
Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQTAAAGAGHAGAQPFGASQPFGSAKSASGQG 182

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                  S+N           V  + + V  + D   F          I  ++      A
Sbjct: 183 SFSGRTPSVNPFETKQAAAPVVEDEPMDVGQE-DLDRF----EQMLVDIQGAYGREDYAA 237

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           + KL          + L    S  K  +   V +    +  A  E N  Y T+ +    I
Sbjct: 238 LRKLTTPEAMSYLAEELGEIASGGKRNEVKDVRLLQGDVSEAWREGNVEYATVAMRYSAI 297

Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
               D+    ++  +P    + +++WTF R    +   W L + +  E
Sbjct: 298 DVMVDRTSGAIVEGNPNEPVESVELWTFTRTDGGA---WQLAAIQGTE 342


>gi|319942109|ref|ZP_08016427.1| hypothetical protein HMPREF9464_01646 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804319|gb|EFW01203.1| hypothetical protein HMPREF9464_01646 [Sutterella wadsworthensis
           3_1_45B]
          Length = 330

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 59/136 (43%), Gaps = 17/136 (12%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
           DFD + FL  AR++Y  +  ++  G V  I     + ++      L  R+   +   + +
Sbjct: 207 DFDREGFLKTARDNYLKLQQAWDTGNVIEISDFTSNEIFTAVTHQL--RERKGEVYHTEV 264

Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
             +++ +++  + ++ T Y ++R  G            ++S +PE      +IW   + +
Sbjct: 265 KSLEN-ELLGIAQQDGTYYASVRFFGSL----------VVSGEPET---FDEIWVLEKPV 310

Query: 217 PPSNPNWVLISTKLGE 232
             +   W+L + +  E
Sbjct: 311 TGTG-GWLLCAIRQNE 325


>gi|115523579|ref|YP_780490.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris BisA53]
 gi|115517526|gb|ABJ05510.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris BisA53]
          Length = 329

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 8/126 (6%)

Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164
            ++E     I +++ +G +  +  L    +   F   L   K+     K S V +    +
Sbjct: 207 EAFERLLGEIQETWSKGDIGHLHMLATPEMVSYFTSDLDANKARGVVNKVSDVKLLQGDL 266

Query: 165 INASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
             +  E  T Y T+ +    +  + D    ++    +   +  ++WTF R        W 
Sbjct: 267 AESWREGETDYATVAMRFSLVDKTTDASGAIVEGS-DQPIEATEVWTFARRQGSD---WE 322

Query: 225 LISTKL 230
           L + + 
Sbjct: 323 LSAIQQ 328


>gi|239832154|ref|ZP_04680483.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
           intermedium LMG 3301]
 gi|239824421|gb|EEQ95989.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
           intermedium LMG 3301]
          Length = 345

 Score = 67.2 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 71/229 (31%), Gaps = 13/229 (5%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK- 64
           M      + + A I  FV   +R    ++           +  +   K        L   
Sbjct: 128 MFGLILQVAVIALIAMFV---MRMFANRRQPAAAGAGNAGAQPFGAPKSAAPQAGPLAGF 184

Query: 65  GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
           G +  +++              V  + + V  + D   F          +  ++      
Sbjct: 185 GGRTPSVNPFETKQEAAPAAPAVEDEPMDVGQE-DLDRF----EQMLSEVQTAYGREDYA 239

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
           A+ KL          + L    S+    +   V +    +  A  E N  Y T+ I    
Sbjct: 240 ALRKLTTPEAMSYLAEELGEIASSGMRNEVKDVKLLQGDVSEAWREGNAEYATVAIRYSA 299

Query: 185 ISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
           I    D++   ++  +P    + +++WTF R     +  W L + +  E
Sbjct: 300 IDVMLDRNTGTVVEGNPNEPVESVELWTFTR---QDSGEWQLAAIQGTE 345


>gi|195502658|ref|XP_002098321.1| GE10319 [Drosophila yakuba]
 gi|194184422|gb|EDW98033.1| GE10319 [Drosophila yakuba]
          Length = 361

 Score = 66.8 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 79/209 (37%), Gaps = 21/209 (10%)

Query: 28  RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83
           RGVL  +   E+PF    +G     YV  + D +  I    G K+       E     ++
Sbjct: 94  RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQKL-----EFLEKKSK 148

Query: 84  LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
               +R I S    F   DF  EA++ Y          + + I + V  R Y +   ++ 
Sbjct: 149 SLMAVRKIRSYEESFSTDDFGAEAQDIYIQAHTHMAAKEKYKIREFVSERCYPEMMHNVK 208

Query: 144 TRKSNEKNVKSSLV-GIDDMKIINASI------EENTVYITIRIVGQFISASYDKDNLLI 196
                 K +    +  ++  ++++A +      E     +T+R   Q + A YD+   L+
Sbjct: 209 D-----KTIHWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLM 263

Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
                +   V++   F ++I      W L
Sbjct: 264 HGSEIVTKDVLEYVVFEKHISNEYGKWRL 292


>gi|153009251|ref|YP_001370466.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561139|gb|ABS14637.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
           anthropi ATCC 49188]
          Length = 348

 Score = 66.8 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 75/232 (32%), Gaps = 16/232 (6%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M      + + A I  FV +++         N +  +   +G                 G
Sbjct: 128 MFGLLLQVAVIALIAMFV-MRMFA-------NRRQPAAAGAGNAGAQPFGAAKTAAPQAG 179

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA----IVDSFFEG 121
            +         + P  T+         +   + +P D   E  + +E     +  ++   
Sbjct: 180 SQAGFGGRTPSVNPFETKQAAAPVTPAAPAVEDEPMDVGQEDLDRFEQMLAEVQTAYGRE 239

Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
              A+ KL          + L    S+    +   V +    +  A  E +  Y T+ I 
Sbjct: 240 DYAALRKLATPEAMSYLAEELGEIASSGMRNEVKDVKLLQGDVSEAWREGDVEYATVAIR 299

Query: 182 GQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
              I    D++   ++  +P+   + +++WTF R        W+L + +  E
Sbjct: 300 YSAIDVMLDRNTGAVVEGNPDEPVESVELWTFTR---TDGGEWLLAAIQGTE 348


>gi|260459996|ref|ZP_05808249.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
           opportunistum WSM2075]
 gi|259034207|gb|EEW35465.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
           opportunistum WSM2075]
          Length = 326

 Score = 66.8 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 43/119 (36%), Gaps = 4/119 (3%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           + ++F      A+ +     +    ++ L+         + S + +    I  +  E++ 
Sbjct: 211 VQEAFGREDHAALRRATTPEMVSYLSEELADNAQKGLRNEVSDITLLQADIAESWREDDR 270

Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
            Y T  +  +      ++     +  D +   +  ++WTF+R       NW L + +  
Sbjct: 271 DYATAALRYESRDVMRERASGKAVEGDDDHPTETTELWTFMRENGS---NWKLSAIQQA 326


>gi|288959507|ref|YP_003449848.1| hypothetical protein AZL_026660 [Azospirillum sp. B510]
 gi|288911815|dbj|BAI73304.1| hypothetical protein AZL_026660 [Azospirillum sp. B510]
          Length = 365

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 71/227 (31%), Gaps = 21/227 (9%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
            ++++F       F + R         +   +       +   +       L +      
Sbjct: 155 IILVVFLVRLAMRFFRNRS--------QTANTAASGSGPLGGNQPAYAGGPLNRDAADVG 206

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE----AIVDSFFEGKVHAI 126
            + +      G       R   +      P DF      S+E     I  ++    V A+
Sbjct: 207 YNPMGNHGMGGGNAGPAPRRQAADEIGIQPADF-----ESFERLLTTIQTAYGREDVEAL 261

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
             +  + ++  F+D L+  ++     K S V +    +     E    Y T+ +    I 
Sbjct: 262 RGVTTAEMFSYFSDDLAGNRNRGLVNKVSDVRLLQGDLAEGWREGPQEYATVAMRFSLID 321

Query: 187 ASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            + ++    ++  +     +  ++WTFVR        W L + +   
Sbjct: 322 VTVERASGRVVEGNASQPTEATELWTFVRQHGGQ---WRLSAIQQTH 365


>gi|307728446|ref|YP_003905670.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
           CCGE1003]
 gi|307582981|gb|ADN56379.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
           CCGE1003]
          Length = 330

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 75/219 (34%), Gaps = 22/219 (10%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           I++ A +       +R  +G+K    +P           S     G     +  +     
Sbjct: 129 IIVIALLAMIGIWLIRRFMGRKRDASQPAYA------GQSPSLNSGATGYTQEPRYTAPP 182

Query: 73  SINELFPIGTRLNK-VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
           + + L P G  L    +    SV   FD + FL  A+  +  +  ++  G +  I +   
Sbjct: 183 AGSYLEPQGNPLTTPSVGATPSVPAGFDSEAFLRNAKVYFVRLQAAWDVGNIEDIREFTT 242

Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
             ++ +    L++R S  ++ ++ +V ++   ++      N  + ++R  G       + 
Sbjct: 243 PEMFAEVRVDLASRGS--ESNQTDVVQLN-ADLLGVEERANEYFASVRFSG----LIREA 295

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                          +++W   +        W+L   + 
Sbjct: 296 LGAPAE-------PFVEVWNLSKANRAGE-GWLLAGIQQ 326


>gi|306844172|ref|ZP_07476765.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO1]
 gi|306275447|gb|EFM57184.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO1]
          Length = 342

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 71/228 (31%), Gaps = 12/228 (5%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M      + + A I  FV   +R    ++           +  +  S+         G+G
Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQTAAAGAGHAGAQPFGASQPFGSAKSASGQG 182

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                  S+N           V  + + V  + D   F          I  ++      A
Sbjct: 183 SFSGRTPSVNPFETKQAAAPVVEDEPMDVGQE-DLDRF----EQMLVDIQGAYGREDYAA 237

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           + KL          + L    S  K  +   V +    +  A  E N  Y T+ +    I
Sbjct: 238 LRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAI 297

Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
               D+    ++  +P    + +++WTF R    +   W L + +  E
Sbjct: 298 DVMVDRTSGAIVEGNPNEPVESVELWTFTRTDGGA---WQLAAIQGTE 342


>gi|293609901|ref|ZP_06692203.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828353|gb|EFF86716.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123134|gb|ADY82657.1| hypothetical protein BDGL_002071 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 323

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 73/226 (32%), Gaps = 26/226 (11%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKK---TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
             +LL A + FFVF +    LG K    GN  P++   +G+  F +           G  
Sbjct: 119 IWVLLAAALAFFVFRK----LGSKKKLAGN-NPYAPNSNGQNPFGRSAAPQAAPRNAGDN 173

Query: 68  KDNL-DSINELFPIGTRLNKVMRDIVSVYTDFD-PKDFLNEARNSYEAIVDSFFEGKVHA 125
            +    S+            V     +   D   P  FL  AR  +  I        +  
Sbjct: 174 TNIFGQSVGGGAATQAPFGGVTTSNGNQLPDGSEPAAFLRIARQRFNHIQSMNTASNIEE 233

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           I + +   +Y    + +   +  +    +    ++ M + +A+ E     +++R      
Sbjct: 234 IRRYLTPELYSSMYNDIMENQDQDV---AEFSNLNAMVVDSAT-ENGQYVVSVRF----- 284

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
                    +      +     +IW FV+       +WV+   +  
Sbjct: 285 ------TGTVSEDLNSLPQPFTEIWHFVKPAGSQQ-DWVVAGIQQA 323


>gi|329114644|ref|ZP_08243403.1| Import Inner Membrane Translocase Subunit [Acetobacter pomorum
           DM001]
 gi|326696124|gb|EGE47806.1| Import Inner Membrane Translocase Subunit [Acetobacter pomorum
           DM001]
          Length = 337

 Score = 66.4 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 2/117 (1%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I  ++ +  + A++++    +   FN+ LS   S       S V      +  A  E   
Sbjct: 220 IQTAWNQQNIPAMQQMATPEMVSYFNEQLSALASQGARNVVSDVHFIQGDLAEAWRENGM 279

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            + T+ +    I  + +    +I         + ++WTF R  P     W+L + + 
Sbjct: 280 DFATVAMRYSLIDLTTNATGQVIQGSSTEPVNITELWTFTR--PSRGGRWLLSAIQQ 334


>gi|289740307|gb|ADD18901.1| mitochondrial ribosomal protein L45 [Glossina morsitans morsitans]
          Length = 355

 Score = 66.1 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 78/210 (37%), Gaps = 23/210 (10%)

Query: 28  RGVLGKKTGNEKPF-----SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82
           RGVL  +   E+PF      G F          +R II+    K+K             +
Sbjct: 82  RGVLPPRPWLERPFHISCTGGIFEPYVPPEGDGKRSIISAAGAKQKFVF------LEKKS 135

Query: 83  RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
           +    +R I +   DF   DF   A++ Y     +      H + +LV  R Y +   ++
Sbjct: 136 KSMLAVRKIRNYEEDFSTDDFAAAAQDVYIGAHQTMALKDKHKLRELVTERCYPEIMHNV 195

Query: 143 STRKSNEKNVKSSLV------GIDDMKIINASIEEN-TVYITIRIVGQFISASYDKDNLL 195
                 +K +  S +       +   ++ +   +EN    IT+R   Q + A YD+   L
Sbjct: 196 -----RDKTIHWSFLKSLEPPYVVHARVTDVISKENLFAQITVRFHTQQLLAIYDRFGRL 250

Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
           +     +   V++   F ++I      W L
Sbjct: 251 MHGSEIVAKDVLEYAVFEKHISNEYGKWRL 280


>gi|182677331|ref|YP_001831477.1| import inner membrane translocase subunit Tim44 [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633214|gb|ACB93988.1| import inner membrane translocase subunit Tim44 [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 321

 Score = 66.1 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 64/212 (30%), Gaps = 27/212 (12%)

Query: 22  FVFLQLRGVLG-KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPI 80
           F+  +L  V+G  +   +  + G   G      + + G    G G         ++  PI
Sbjct: 132 FLLFKL--VMGFLRNRQQPAYQGADQGGQAPGNQPQGGNFGFGGGPGPGRAGVNDQPLPI 189

Query: 81  GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
            T         ++                    I  SF    ++ +  L    +   F +
Sbjct: 190 ETADYTAFEQKLAA-------------------IQSSFSNEDLNGLRLLTTPEMASYFAE 230

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINA--SIEENTVYITIRIVGQFISASYDKDNLLISS 198
            ++   +     K S V +    +  A          + +R               ++S 
Sbjct: 231 EIAGNATKGFVNKISDVKLLQGDVAEAWREANGEYATVAMRFSLTDRMIER-ASGRIVSG 289

Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                 +V +IWTF R +  +  +W L + + 
Sbjct: 290 --GTPEQVTEIWTFFRPLGATPADWKLAAIQQ 319


>gi|303248706|ref|ZP_07334959.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
           fructosovorans JJ]
 gi|302489871|gb|EFL49799.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
           fructosovorans JJ]
          Length = 303

 Score = 66.1 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 65/219 (29%), Gaps = 30/219 (13%)

Query: 14  LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73
           L+      F+  +    LG++           + +   S         + +       + 
Sbjct: 114 LILIGGGLFLLFRF---LGRR---------RMASQSGPSMARTYEASPMREAAGSGWANL 161

Query: 74  INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
                    +         +V   FD +DFL+ A+  +  +  S+    V  I       
Sbjct: 162 GAASSGPQAQAASG----PNVPPGFDVEDFLSGAKTLFGRLQRSWSARDVSDIATFATP- 216

Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
               F + +  + + + N + + V + D K++       T   +                
Sbjct: 217 ---AFMEDVRRQAAEDPNPEPTDVLLVDAKLLEVRKMGETTIASAYFDTLMR-------E 266

Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
              +  PE    V +IW F R       NW L + +  E
Sbjct: 267 DPKAGQPEQ---VREIWHFARRDDVPGDNWRLDAIQQLE 302


>gi|303327521|ref|ZP_07357962.1| Tim44 domain protein [Desulfovibrio sp. 3_1_syn3]
 gi|302862461|gb|EFL85394.1| Tim44 domain protein [Desulfovibrio sp. 3_1_syn3]
          Length = 310

 Score = 66.1 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 77/231 (33%), Gaps = 27/231 (11%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           MD     +L+F  +   +F + R    ++           +        D R      +G
Sbjct: 99  MDIIIIGLLVFLGLK--LFARFRN---RQAPAPAGAGAQGASTMGGLHGDLREDSASSQG 153

Query: 66  KKKDNLDS---INELFPIGTRL-NKVMRDIVSVY--TDFDPKDFLNEARNSYEAIVDSFF 119
            ++DN  +   +    P G     +      SV     FD  +FL  A+ +Y  + +S+ 
Sbjct: 154 MRRDNAAAGWDVLRNAPQGGAGQAQAFDAAPSVDVPQGFDVDEFLRGAKMAYSRLQNSWD 213

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
           +  +  I +     V      ++  +   E    ++ V + + +++    + +     + 
Sbjct: 214 KRDLDDIAQFATPAVLD----AVREQLEAEPTPSTTEVLLVNAQLLGVENDGDEQRAQVF 269

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                  +           D +    V ++W FVR I     +W L   + 
Sbjct: 270 FDVLMRESP----------DQQAPSSVREVWHFVRPIAGG--SWKLDGIQQ 308


>gi|330993425|ref|ZP_08317360.1| hypothetical protein SXCC_03323 [Gluconacetobacter sp. SXCC-1]
 gi|329759455|gb|EGG75964.1| hypothetical protein SXCC_03323 [Gluconacetobacter sp. SXCC-1]
          Length = 324

 Score = 66.1 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 2/117 (1%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I  ++ +  V A++ +    +   FN+ LS   S       S +  +   ++ +  E   
Sbjct: 207 IQTAWSQQNVAAMQHMATPEMVSYFNNQLSELASRGARNVVSDIRFERGDLVESWRENGM 266

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            Y T+ +    I  + D    +I  DP     V ++WTFVR        W+L + + 
Sbjct: 267 DYATVAMQYSMIDITTDMTGRVIDGDPANRTTVAELWTFVRAAGTG--TWLLSAIQQ 321


>gi|194746347|ref|XP_001955642.1| GF18867 [Drosophila ananassae]
 gi|190628679|gb|EDV44203.1| GF18867 [Drosophila ananassae]
          Length = 360

 Score = 66.1 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 80/212 (37%), Gaps = 27/212 (12%)

Query: 28  RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83
           RGVL  +   E+PF    +G     YV  + D +  I    G K+       E     ++
Sbjct: 92  RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISSSGAKQKL-----EFLEKKSK 146

Query: 84  LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS---FFEGKVHAIEKLVDSRVYQDFND 140
               +R I S    F   +F  EA+  Y   + +         + I + V  R Y +   
Sbjct: 147 SLMAVRKIRSYEESFSSDEFGAEAQEIY---IKAHQHMAAKDKYQIREYVSERCYPEMMH 203

Query: 141 SLSTRKSNEKNVKSSLV-GIDDMKIINASI------EENTVYITIRIVGQFISASYDKDN 193
           ++       K ++   +  ++  ++++A +      E     +T+R   Q + A YD+  
Sbjct: 204 NVKD-----KTIRWRFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFG 258

Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
            L+     +   V++   F ++I      W L
Sbjct: 259 RLMHGSEILTKDVLEYVVFEKHISNEYGKWRL 290


>gi|254719318|ref|ZP_05181129.1| import inner membrane translocase subunit Tim44 [Brucella sp.
           83/13]
 gi|265984320|ref|ZP_06097055.1| import inner membrane translocase subunit Tim44 [Brucella sp.
           83/13]
 gi|306839093|ref|ZP_07471910.1| import inner membrane translocase subunit Tim44 [Brucella sp. NF
           2653]
 gi|264662912|gb|EEZ33173.1| import inner membrane translocase subunit Tim44 [Brucella sp.
           83/13]
 gi|306405640|gb|EFM61902.1| import inner membrane translocase subunit Tim44 [Brucella sp. NF
           2653]
          Length = 342

 Score = 66.1 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 71/228 (31%), Gaps = 12/228 (5%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M      + + A I  FV   +R    ++           +  +  S+         G+G
Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQTAAAGAGHAGAQPFGASQPFGSAKSASGQG 182

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                  S+N           V  + + V  + D   F          I  ++      A
Sbjct: 183 SFSGRTPSVNPFETKQAAAPVVEDEPMDVGQE-DLDRF----EQMLVDIQGAYGREDYAA 237

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           + KL          + L    S  K  +   V +    +  A  E N  Y T+ +    I
Sbjct: 238 LRKLTTPEAMSCLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAI 297

Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
               D+    ++  +P    + +++WTF R    +   W L + +  E
Sbjct: 298 DVMVDRTSGAIVEGNPNEPVESVELWTFTRIDGGA---WQLAAIQGTE 342


>gi|195331089|ref|XP_002032235.1| GM26453 [Drosophila sechellia]
 gi|194121178|gb|EDW43221.1| GM26453 [Drosophila sechellia]
          Length = 362

 Score = 66.1 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 21/209 (10%)

Query: 28  RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83
           RGVL  +   E+PF    +G     YV  + D +  I    G K+       E     ++
Sbjct: 94  RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQK-----FEFLEKKSK 148

Query: 84  LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
               +R I S   +F   DF  EA++ Y            + I + V  R Y +   ++ 
Sbjct: 149 SLMAVRKIRSYDENFRSDDFGAEAQDIYIQAHTHMAAKDKYKIREFVSERCYPEMMHNVK 208

Query: 144 TRKSNEKNVKSSLV-GIDDMKIINASI------EENTVYITIRIVGQFISASYDKDNLLI 196
                 K ++   +  ++  ++++A +      E     +T+R   Q + A YD+   L+
Sbjct: 209 D-----KTIRWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLM 263

Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
                I   V++   F ++I      W L
Sbjct: 264 HGSEIITKDVLEYVVFEKHISNEYGKWRL 292


>gi|58040295|ref|YP_192259.1| putative transmembrane protein [Gluconobacter oxydans 621H]
 gi|58002709|gb|AAW61603.1| Putative transmembrane protein [Gluconobacter oxydans 621H]
          Length = 316

 Score = 65.7 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 2/118 (1%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I  ++    + A+  +    +   FN  LS   S       S V      +  A  E N 
Sbjct: 200 IQAAWSAQNMRALASMATPEMTGYFNAQLSDLASRGARNIVSNVQFQRGDLSEAWREGNL 259

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
            Y T+ +       + D    +I         V ++WTFVR       NW+L + +  
Sbjct: 260 TYATVAMRYSMTDVTTDSMGNVIDGSSTEPVTVTELWTFVRADGRG--NWILSAIQQA 315


>gi|15965783|ref|NP_386136.1| putative transmembrane protein [Sinorhizobium meliloti 1021]
 gi|15075052|emb|CAC46609.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
          Length = 276

 Score = 65.7 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 4/120 (3%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           +  ++      A+ +L          + LS   +     +   V +    +  A  E  +
Sbjct: 159 VQAAYGAEDYAALRRLTTPEAMSYLAEELSDNATKGLKNEVRDVHLVQGDLAEAWKENGS 218

Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            Y T+ +  + +    D+    ++S D +   + ++IWTF R        W + + +  E
Sbjct: 219 DYATVAMRYESVDVVRDRATGRVVSGDADRPTEAVEIWTFQRKPGAD---WQVSAIQGVE 275


>gi|221211249|ref|ZP_03584228.1| Tim44 domain protein [Burkholderia multivorans CGD1]
 gi|221168610|gb|EEE01078.1| Tim44 domain protein [Burkholderia multivorans CGD1]
          Length = 340

 Score = 65.7 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 73/237 (30%), Gaps = 33/237 (13%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDE-RGIIT 61
           F  M S   +I L A I       +R  + ++    +P    +S     S         +
Sbjct: 124 FAGMMSNLIVIALLAMIG---IWLVRKFMNRR----RPQEPAYSVGSAPSSSGGYAQSPS 176

Query: 62  LGKGKKKDNLDSINELFPIGTRL--------NKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
              G       S +       R+               V V   FD   FL  A+ S+  
Sbjct: 177 FQPGSTSQYSGSGSNYANEAQRVFNGGAPAAGAAAAAPVQVPAGFDTDAFLRSAKVSFVR 236

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           +  ++ +G +  I +     ++ +    L +R    +  ++ +V + D +++        
Sbjct: 237 LQAAWDQGNLADIREFTTPEMFAEIKIDLDSR--GNEPNQTDVVQL-DAELVALEDRGIE 293

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
              ++R              L+  S         ++W   ++       W+L   + 
Sbjct: 294 QSASVRF-----------HGLIRESSNAAAEPFDEVWNLSKSGGQG---WLLAGIQQ 336


>gi|33146500|dbj|BAC79609.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|50510250|dbj|BAD31456.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 353

 Score = 65.7 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 11/125 (8%)

Query: 96  TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155
           T +  K+F ++A   Y+ +      G   ++ K++  R++    + L  R+S   +V   
Sbjct: 206 TGYTKKEFYDQAFKIYKEVNTLMAHGDTSSLRKILTERMHSTIKNELKKRQSMWSSVHWE 265

Query: 156 LV---------GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
           LV             + +    +++  + +T+  V +    +Y+    ++S D      +
Sbjct: 266 LVEPAVCIRTLRARMIGLDKNDLDKAFIQLTLEFVTKQKFEAYNTKGEVVSGDKSKELII 325

Query: 207 IDIWT 211
             +WT
Sbjct: 326 --VWT 328


>gi|92115162|ref|YP_575090.1| import inner membrane translocase, subunit Tim44 [Chromohalobacter
           salexigens DSM 3043]
 gi|91798252|gb|ABE60391.1| import inner membrane translocase, subunit Tim44 [Chromohalobacter
           salexigens DSM 3043]
          Length = 272

 Score = 65.3 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 65/218 (29%), Gaps = 44/218 (20%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           ILL A I +F F  LR    ++            G    +++  +   T           
Sbjct: 95  ILLVALIAWFAFRLLRA---RRV-------ATSEGPQHQARQPHQEATTTSPFSSAGTSM 144

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
             +   P                  FD + FL  A+  +  +  ++    +  I++ V  
Sbjct: 145 PSSGATPE----------------WFDKERFLGGAKEHFMTLQRAWDNNDLARIQEYVTP 188

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            +Y         R     N ++ +V +   ++ +          ++   G       D++
Sbjct: 189 TLYNLLR---EERAQQPANNRTEIVRLF-AELGDVREIGQQAEASVLFHG-----VLDEN 239

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                       +  + W  +R++    P W +   + 
Sbjct: 240 GER--------NEFNETWHLIRDLREGAP-WYVQGIEQ 268


>gi|302848231|ref|XP_002955648.1| hypothetical protein VOLCADRAFT_106869 [Volvox carteri f.
           nagariensis]
 gi|300259057|gb|EFJ43288.1| hypothetical protein VOLCADRAFT_106869 [Volvox carteri f.
           nagariensis]
          Length = 296

 Score = 65.3 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 17/146 (11%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
            F   D  +    +Y+++  +   G +   E  V   +       ++ R+     V+  +
Sbjct: 143 GFSKTDLQSRVLAAYKSVNLAIATGDMRYAEPFVTESMLLRLTGEVT-RRGRAARVEWRM 201

Query: 157 VG---IDDMKIINASIEEN--------TVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
           V      D+K++  ++ +N         V  T R+  + + A YD    LI+ DP     
Sbjct: 202 VSEPDPRDIKLVCGTVVQNPLKQGRLHFVQWTARVPSRQVVAVYDARGNLIAGDPHKELD 261

Query: 206 VIDIWTFVRNIPPSNPNWVLISTKLG 231
           V+D W F R I  +     L++ + G
Sbjct: 262 VVDYWVFERPILKA-----LVAPRPG 282


>gi|150397061|ref|YP_001327528.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
           medicae WSM419]
 gi|150028576|gb|ABR60693.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
           medicae WSM419]
          Length = 333

 Score = 65.3 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 59/198 (29%), Gaps = 12/198 (6%)

Query: 37  NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT 96
           N++P     S     S               +    +     P          +I     
Sbjct: 145 NQRPAYSAPSATARTSATAGNPPSFRIPRIGEAVGSAAAPRSPAAAPAYGGGEEISVGQD 204

Query: 97  DFDP-KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155
           D D  +  L   + +Y             A+ +L          + LS   +     +  
Sbjct: 205 DLDRFETMLKGVQAAYG-------AEDYAALRRLTTPEAMSYLAEELSDNATKGLKNEVR 257

Query: 156 LVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVR 214
            V +    +  A   +   Y T+ +  + +    D+    ++S D +   + ++IWTFVR
Sbjct: 258 DVHLVQGDLAEAWRGDGRDYATVAMRYESVDVMRDRATGDVVSGDADRPTEAVEIWTFVR 317

Query: 215 NIPPSNPNWVLISTKLGE 232
                   W + + +  E
Sbjct: 318 RPGAD---WQVSAIQGVE 332


>gi|307311318|ref|ZP_07590961.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
           meliloti BL225C]
 gi|307318851|ref|ZP_07598283.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
           meliloti AK83]
 gi|306895572|gb|EFN26326.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
           meliloti AK83]
 gi|306899619|gb|EFN30247.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
           meliloti BL225C]
          Length = 337

 Score = 65.3 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 4/120 (3%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           +  ++      A+ +L          + LS   +     +   V +    +  A  E  +
Sbjct: 220 VQAAYGAEDYAALRRLTTPEAMSYLAEELSDNATKGLKNEVRDVHLVQGDLAEAWKENGS 279

Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            Y T+ +  + +    D+    ++S D +   + ++IWTF R        W + + +  E
Sbjct: 280 DYATVAMRYESVDVVRDRATGRVVSGDADRPTEAVEIWTFQRKPGAD---WQVSAIQGVE 336


>gi|258542756|ref|YP_003188189.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256633834|dbj|BAH99809.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256636893|dbj|BAI02862.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256639946|dbj|BAI05908.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643002|dbj|BAI08957.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646057|dbj|BAI12005.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649110|dbj|BAI15051.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652097|dbj|BAI18031.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655154|dbj|BAI21081.1| mitochondrial import inner membrane translocase subunit Tim44
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 323

 Score = 64.9 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 2/117 (1%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I  ++ +  + A++++    +   FN+ LS   S       S V      +  A  E   
Sbjct: 206 IQTAWNQQNIAAMQQMATPEMVSYFNEQLSALASQGARNVVSDVHFIQGDLAEAWRENGM 265

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            + T+ +    I  + +    +I         + ++WTF R  P     W+L + + 
Sbjct: 266 DFATVAMRYSLIDLTTNAMGQVIQGSSTEPVNITELWTFTR--PSRGGRWLLSAIQQ 320


>gi|195158248|ref|XP_002020004.1| GL13752 [Drosophila persimilis]
 gi|194116773|gb|EDW38816.1| GL13752 [Drosophila persimilis]
          Length = 352

 Score = 64.9 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 77/209 (36%), Gaps = 21/209 (10%)

Query: 28  RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83
           RGVL  +   E+PF    +G     YV  + D +  I    G K+       E     ++
Sbjct: 85  RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISSSGAKQKL-----EFLEKKSK 139

Query: 84  LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
               +R I S    F    F  EA+  Y A        + + I + V  R Y +   ++ 
Sbjct: 140 SLIAVRKIRSYDESFSSDQFGAEAQEIYVAAHTLMAAKEKYKIREYVSERCYPEMMHNVK 199

Query: 144 TRKSNEKNVKSSLV-GIDDMKIINAS------IEENTVYITIRIVGQFISASYDKDNLLI 196
                 K +    +  ++  ++++A        E     +T+R   Q + A YD+   L+
Sbjct: 200 D-----KTIHWRFLQSLEPPRVVHARCTEVITKENQFAQVTVRFHTQQMLAIYDRFGRLM 254

Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
                +   V++   F ++I      W L
Sbjct: 255 HGSEILTKDVLEYVVFEKHISNEYGKWRL 283


>gi|125773335|ref|XP_001357926.1| GA19976 [Drosophila pseudoobscura pseudoobscura]
 gi|54637660|gb|EAL27062.1| GA19976 [Drosophila pseudoobscura pseudoobscura]
          Length = 352

 Score = 64.9 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 77/209 (36%), Gaps = 21/209 (10%)

Query: 28  RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83
           RGVL  +   E+PF    +G     YV  + D +  I    G K+       E     ++
Sbjct: 85  RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISSSGAKQKL-----EFLEKKSK 139

Query: 84  LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
               +R I S    F    F  EA+  Y A        + + I + V  R Y +   ++ 
Sbjct: 140 SLIAVRKIRSYDESFSSDQFGAEAQEIYVAAHTLMAAKEKYKIREYVSERCYPEMMHNVK 199

Query: 144 TRKSNEKNVKSSLV-GIDDMKIINAS------IEENTVYITIRIVGQFISASYDKDNLLI 196
                 K +    +  ++  ++++A        E     +T+R   Q + A YD+   L+
Sbjct: 200 D-----KTIHWRFLQSLEPPRVVHARCTEVITKENQFAQVTVRFHTQQMLAIYDRFGRLM 254

Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
                +   V++   F ++I      W L
Sbjct: 255 HGSEILTKDVLEYVVFEKHISNEYGKWRL 283


>gi|161523748|ref|YP_001578760.1| import inner membrane translocase subunit Tim44 [Burkholderia
           multivorans ATCC 17616]
 gi|189351491|ref|YP_001947119.1| hypothetical protein BMULJ_02693 [Burkholderia multivorans ATCC
           17616]
 gi|221200067|ref|ZP_03573110.1| Tim44 domain protein [Burkholderia multivorans CGD2M]
 gi|221206780|ref|ZP_03579792.1| Tim44 domain protein [Burkholderia multivorans CGD2]
 gi|160341177|gb|ABX14263.1| import inner membrane translocase subunit Tim44 [Burkholderia
           multivorans ATCC 17616]
 gi|189335513|dbj|BAG44583.1| putative membrane protein [Burkholderia multivorans ATCC 17616]
 gi|221173435|gb|EEE05870.1| Tim44 domain protein [Burkholderia multivorans CGD2]
 gi|221180306|gb|EEE12710.1| Tim44 domain protein [Burkholderia multivorans CGD2M]
          Length = 340

 Score = 64.9 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 74/237 (31%), Gaps = 33/237 (13%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDE-RGIIT 61
           F  M S   +I L A I       +R  + ++    +P    +S     S         +
Sbjct: 124 FAGMMSNLIVIALLAMIG---IWLVRKFMNRR----RPQEPAYSVGSAPSSSGGYAQSPS 176

Query: 62  LGKGKKKDNLDSINELFPIGTRL--------NKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
              G       S +       R+               V V   FD   FL  A+ S+  
Sbjct: 177 FQPGSTSQYSGSGSNYANEAQRVFNGGAPAAGAAAAAPVQVPAGFDTDAFLRSAKVSFVR 236

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           +  ++ +G +  I +     ++ +    L +R    +  ++ +V + D +++        
Sbjct: 237 LQAAWDQGNLADIREFTTPEMFAEIKIDLDSR--GNEPNQTDVVQL-DAELVALEDRGIE 293

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
              ++R  G  I  S +                 ++W   ++       W+L   + 
Sbjct: 294 QSASVRFHG-LIRESANAAAEPFD----------EVWNLSKSGGQG---WLLAGIQQ 336


>gi|23502145|ref|NP_698272.1| hypothetical protein BR1269 [Brucella suis 1330]
 gi|163843532|ref|YP_001627936.1| import inner membrane translocase subunit Tim44 [Brucella suis ATCC
           23445]
 gi|225852763|ref|YP_002732996.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis ATCC 23457]
 gi|254702005|ref|ZP_05163833.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
           5 str. 513]
 gi|254704546|ref|ZP_05166374.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
           3 str. 686]
 gi|254706558|ref|ZP_05168386.1| import inner membrane translocase subunit Tim44 [Brucella
           pinnipedialis M163/99/10]
 gi|254710332|ref|ZP_05172143.1| import inner membrane translocase subunit Tim44 [Brucella
           pinnipedialis B2/94]
 gi|256031826|ref|ZP_05445440.1| import inner membrane translocase subunit Tim44 [Brucella
           pinnipedialis M292/94/1]
 gi|256044910|ref|ZP_05447814.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256160005|ref|ZP_05457714.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           M490/95/1]
 gi|256255226|ref|ZP_05460762.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           B1/94]
 gi|256263752|ref|ZP_05466284.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis bv. 2 str. 63/9]
 gi|256369690|ref|YP_003107200.1| Tim44 domain-containing protein [Brucella microti CCM 4915]
 gi|260168960|ref|ZP_05755771.1| Tim44 domain-containing protein [Brucella sp. F5/99]
 gi|260565489|ref|ZP_05835973.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis bv. 1 str. 16M]
 gi|261222423|ref|ZP_05936704.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           B1/94]
 gi|261314017|ref|ZP_05953214.1| import inner membrane translocase subunit Tim44 [Brucella
           pinnipedialis M163/99/10]
 gi|261317896|ref|ZP_05957093.1| import inner membrane translocase subunit Tim44 [Brucella
           pinnipedialis B2/94]
 gi|261752572|ref|ZP_05996281.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
           5 str. 513]
 gi|261755230|ref|ZP_05998939.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
           3 str. 686]
 gi|261758453|ref|ZP_06002162.1| import inner membrane translocase subunit Tim44 [Brucella sp.
           F5/99]
 gi|265988925|ref|ZP_06101482.1| import inner membrane translocase subunit Tim44 [Brucella
           pinnipedialis M292/94/1]
 gi|265991338|ref|ZP_06103895.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265998390|ref|ZP_06110947.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           M490/95/1]
 gi|294852604|ref|ZP_06793277.1| import inner membrane translocase subunit Tim44 [Brucella sp. NVSL
           07-0026]
 gi|23348108|gb|AAN30187.1| conserved hypothetical protein [Brucella suis 1330]
 gi|163674255|gb|ABY38366.1| import inner membrane translocase subunit Tim44 [Brucella suis ATCC
           23445]
 gi|225641128|gb|ACO01042.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis ATCC 23457]
 gi|255999852|gb|ACU48251.1| Tim44 domain-containing protein [Brucella microti CCM 4915]
 gi|260151557|gb|EEW86651.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis bv. 1 str. 16M]
 gi|260921007|gb|EEX87660.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           B1/94]
 gi|261297119|gb|EEY00616.1| import inner membrane translocase subunit Tim44 [Brucella
           pinnipedialis B2/94]
 gi|261303043|gb|EEY06540.1| import inner membrane translocase subunit Tim44 [Brucella
           pinnipedialis M163/99/10]
 gi|261738437|gb|EEY26433.1| import inner membrane translocase subunit Tim44 [Brucella sp.
           F5/99]
 gi|261742325|gb|EEY30251.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
           5 str. 513]
 gi|261744983|gb|EEY32909.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
           3 str. 686]
 gi|262552858|gb|EEZ08848.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           M490/95/1]
 gi|263002122|gb|EEZ14697.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263093810|gb|EEZ17815.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis bv. 2 str. 63/9]
 gi|264661122|gb|EEZ31383.1| import inner membrane translocase subunit Tim44 [Brucella
           pinnipedialis M292/94/1]
 gi|294821193|gb|EFG38192.1| import inner membrane translocase subunit Tim44 [Brucella sp. NVSL
           07-0026]
 gi|326409290|gb|ADZ66355.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis M28]
 gi|326539001|gb|ADZ87216.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis M5-90]
          Length = 342

 Score = 64.9 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 70/228 (30%), Gaps = 12/228 (5%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M      + + A I  FV   +R    ++           +  +  S+         G+G
Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQTAAAGAGHAGAQPFGASQPFGSAKSASGQG 182

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                  S+N           V  + + V  + D   F          I   +      A
Sbjct: 183 SFSGRTPSVNPFETKQAAAPVVEDEPMDVGQE-DLDRF----EQMLVDIQGGYGREDYAA 237

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           + KL          + L    S  K  +   V +    +  A  E N  Y T+ +    I
Sbjct: 238 LRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAI 297

Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
               D+    ++  +P    + +++WTF R    +   W L + +  E
Sbjct: 298 DVMVDRTSGAVVEGNPNEPVESVELWTFTRTDGGA---WQLAAIQGTE 342


>gi|254714328|ref|ZP_05176139.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           M644/93/1]
 gi|254717227|ref|ZP_05179038.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           M13/05/1]
 gi|261219045|ref|ZP_05933326.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           M13/05/1]
 gi|261322105|ref|ZP_05961302.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           M644/93/1]
 gi|260924134|gb|EEX90702.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           M13/05/1]
 gi|261294795|gb|EEX98291.1| import inner membrane translocase subunit Tim44 [Brucella ceti
           M644/93/1]
          Length = 342

 Score = 64.9 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 70/228 (30%), Gaps = 12/228 (5%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M      + + A I  FV   +R    ++           +  +  S+         G+G
Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQTAAAGAGHAGAQPFGASQPFGSAKSASGQG 182

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                  S+N           V  + + V  + D   F          I   +      A
Sbjct: 183 SFSGRTPSVNPFETKQAAAPVVEDEPMDVGQE-DLDRF----EQMLVDIQGGYGREDYAA 237

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           + KL          + L    S  K  +   V +    +  A  E N  Y T+ +    I
Sbjct: 238 LRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAI 297

Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
               D+    ++  +P    + +++WTF R    +   W L + +  E
Sbjct: 298 DVMVDRTSGAVVEGNPNEPVESVELWTFTRTDGGA---WQLAAIQGTE 342


>gi|161619220|ref|YP_001593107.1| import inner membrane translocase subunit Tim44 [Brucella canis
           ATCC 23365]
 gi|260566211|ref|ZP_05836681.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
           4 str. 40]
 gi|161336031|gb|ABX62336.1| import inner membrane translocase subunit Tim44 [Brucella canis
           ATCC 23365]
 gi|260155729|gb|EEW90809.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
           4 str. 40]
          Length = 342

 Score = 64.9 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 70/228 (30%), Gaps = 12/228 (5%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M      + + A I  FV   +R    ++           +  +  S+         G+G
Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQTAAAGAGHAGAQPFGASQPFGSAKSASGQG 182

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                  S+N           V  + + V  + D   F          I   +      A
Sbjct: 183 SFSGRTPSVNPFETKQAAAPVVEDEPMDVGQE-DLDRF----EQMLVDIQGGYGREDYAA 237

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           + KL          + L    S  K  +   V +    +  A  E N  Y T+ +    I
Sbjct: 238 LRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAI 297

Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
               D+    ++  +P    + +++WTF R    +   W L + +  E
Sbjct: 298 DVMVDRTSGAVVEGNPNEPVESVELWTFTRTDGGA---WQLAAIQGTE 342


>gi|209542494|ref|YP_002274723.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530171|gb|ACI50108.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 320

 Score = 64.9 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 2/118 (1%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I  ++ +  + A++ +    +   FN  LS   S       S V  +   +  A  E   
Sbjct: 204 IQAAWSQRNLPALQHMATPEMVGYFNAQLSDLASRGARNVVSDVRFEQGDLSEAWSENGF 263

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
            Y T+ +    +  + D    +I         V ++WTFVR        W+L + + G
Sbjct: 264 DYATVAMRYSMVDITTDMTGRVIDGSSTERVMVTELWTFVRPTRGG--AWLLSAIQQG 319


>gi|134096015|ref|YP_001101090.1| hypothetical protein HEAR2855 [Herminiimonas arsenicoxydans]
 gi|133739918|emb|CAL62969.1| conserved hypothetical protein; putative exported protein
           [Herminiimonas arsenicoxydans]
          Length = 315

 Score = 64.9 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 71/230 (30%), Gaps = 23/230 (10%)

Query: 6   MDSGDFLILLFAFITFFVFLQL---RGVLGKKTGNEKP-FSGFFSGKYVFSKRDERGIIT 61
           M S   ++ LFAF   F+  ++   +   G + GN++      F   +            
Sbjct: 103 MISTMLMVGLFAFAAMFI-YRMIKAKSA-GAQAGNQRNGLQPSFPNNFSEKSSTPEIGSR 160

Query: 62  LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
           + +   + +          G+     +     +  DFD + F+  A+  +  +  ++ + 
Sbjct: 161 IEQPYGQPSALQSAAPLASGSAFGAGIDAANDLPADFDVESFVRNAKTYFIRLQAAWDKA 220

Query: 122 KVHAIEKLVDSRVYQDFNDSLSTR-KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
            V+ I +     ++ +    L  R  S       SL GI            +    +I+ 
Sbjct: 221 DVNDIREFTTPEMFAELKAQLLERGASENHTDVISLEGI----FYGVETVGDDYIASIKF 276

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                        L+            + W   + +   +  WVL   + 
Sbjct: 277 -----------TGLINEGAGAPTEPFSEAWNLSKPVH-GDGGWVLAGIQQ 314


>gi|15604299|ref|NP_220815.1| hypothetical protein RP434 [Rickettsia prowazekii str. Madrid E]
 gi|6226372|sp|O05965|Y434_RICPR RecName: Full=Uncharacterized protein RP434
 gi|2073499|emb|CAA72444.1| hypothetical protein [Rickettsia prowazekii]
 gi|3860991|emb|CAA14891.1| unknown [Rickettsia prowazekii]
 gi|292572048|gb|ADE29963.1| hypothetical protein rpr22_CDS424 [Rickettsia prowazekii Rp22]
          Length = 212

 Score = 64.9 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 57/144 (39%), Gaps = 20/144 (13%)

Query: 86  KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145
             +  I      FDP  F+N A+ +++ I+++ ++  V  + +L+D R  ++F   +   
Sbjct: 87  DGIEQIHKRLYSFDPVKFINNAKTAFQMIIEAAYKKDVKELSELIDKRYLEEFEKIIP-- 144

Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
            S      SS +     K     +  N ++I +   G+           ++         
Sbjct: 145 -SYGDFFDSSAL---SAKYSEIYMFGNNIFIKLLFQGK----------NVVD----KIED 186

Query: 206 VIDIWTFVRNIPPSNPNWVLISTK 229
           + + WTF RN      +W L + +
Sbjct: 187 LQEEWTFTRNANTKEVDWFLSNIE 210


>gi|284043595|ref|YP_003393935.1| import inner membrane translocase subunit Tim44 [Conexibacter
           woesei DSM 14684]
 gi|283947816|gb|ADB50560.1| import inner membrane translocase subunit Tim44 [Conexibacter
           woesei DSM 14684]
          Length = 216

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 58/163 (35%), Gaps = 4/163 (2%)

Query: 58  GIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117
            +  +              + P+    ++ +  I      FDP  F   A  ++ A+  +
Sbjct: 27  DVTVMANEPLAGGSTDAAVVSPLAP--DEGIALIRRADPAFDPAGFERRAEQAFLALGQA 84

Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
           + +    A   L+   +++ ++ ++       K      + +D +  +          +T
Sbjct: 85  WQDRDREAARPLMSPGLHKSWSANVQMFVDEHKRNVLEGMRVDSLAPVKVVHGNAFDALT 144

Query: 178 IRIVGQFISASYD-KDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
           +R    +IS   D + + +I+ D        + +TF R++   
Sbjct: 145 VRFTATWISYEVDERTDRVIAGD-RTPQSFTEFFTFQRSVDAR 186


>gi|258597316|ref|XP_001347936.2| mitochondrial inner membrane translocase subunit TIM44, putative
           [Plasmodium falciparum 3D7]
 gi|254832659|gb|AAN35849.2| mitochondrial inner membrane translocase subunit TIM44, putative
           [Plasmodium falciparum 3D7]
          Length = 470

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 56/131 (42%), Gaps = 10/131 (7%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA-----IVDSFFEGKVHAIEKLVDSRVYQ 136
           T L   +R++  +  +F   + +      +E      IV+S+  G    +     S  + 
Sbjct: 309 TELAAALREMKMIDKNFKLSELM----YLFEYVISKHIVESYLIGDEETLRLHCGSSAFN 364

Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINA-SIEENTVYITIRIVGQFISASYDKDNLL 195
             N S++ RK  +  + ++++   + ++  A  +EE++ +       Q I+   +K++ +
Sbjct: 365 SLNASITERKKKKVFLDTNVLIYKNHELKGAQRMEESSPWFIFTFHTQQINCLKNKNDEI 424

Query: 196 ISSDPEIFGKV 206
           I    +   +V
Sbjct: 425 IEGKIDDIREV 435


>gi|238028618|ref|YP_002912849.1| hypothetical protein bglu_1g30820 [Burkholderia glumae BGR1]
 gi|237877812|gb|ACR30145.1| Hypothetical protein bglu_1g30820 [Burkholderia glumae BGR1]
          Length = 348

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 69/244 (28%), Gaps = 37/244 (15%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
           F  M +   +I L AF   ++  +L    G++   ++P                      
Sbjct: 122 FAGMMANLIVIALLAFAGIWLVRKLMN-RGRR---QEPAYAGSGASMNRGYDGAASGGYA 177

Query: 63  GKGKKKDNLDSINELFPIGTRLNKVM----------------RDIVSVYTDFDPKDFLNE 106
                  +               +V                   +  V   FD + F+  
Sbjct: 178 AGNATYSSAPQPASSSNYANEAARVFGGGAAAGAVNDAVGSASAVPQVPAGFDTEAFVRN 237

Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN 166
           A+  +  +  ++ +G +  I +     ++ +    L +R + +   ++ +V I D  ++ 
Sbjct: 238 AKVYFVRLQAAWDQGNLADIREFTTPEMFAEVKIDLDSRGAGKN--QTDVVQI-DADLLG 294

Query: 167 ASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226
                +    ++R  G       +                 ++W         N  W+L 
Sbjct: 295 VEQRGSLSEASVRFHG----MIRENPGAPAE-------PFEEVWNL---TKSGNEGWLLA 340

Query: 227 STKL 230
             + 
Sbjct: 341 GIQQ 344


>gi|162147875|ref|YP_001602336.1| hypothetical protein GDI_2091 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161786452|emb|CAP56034.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 324

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 2/118 (1%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I  ++ +  + A++ +    +   FN  LS   S       S V  +   +  A  E   
Sbjct: 208 IQAAWSQRNLPALQHMATPEMVGYFNAQLSDLASRGARNVVSDVRFEQGDLSEAWSENGF 267

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
            Y T+ +    +  + D    +I         V ++WTFVR        W+L + + G
Sbjct: 268 DYATVAMRYSMVDITTDMTGRVIDGSSTERVMVTELWTFVRPTRGG--AWLLSAIQQG 323


>gi|70943748|ref|XP_741884.1| mitochondrial import inner membrane translocase, [Plasmodium
           chabaudi chabaudi]
 gi|56520543|emb|CAH80928.1| mitochondrial import inner membrane translocase, putative
           [Plasmodium chabaudi chabaudi]
          Length = 367

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 53/131 (40%), Gaps = 10/131 (7%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA-----IVDSFFEGKVHAIEKLVDSRVYQ 136
           T L   +R +     +F   + +      +E      IV+S+  G    +        + 
Sbjct: 206 TELAAALRVMKMEDKNFKLSELM----YLFEFVISKHIVESYLIGDEETLRLHCGQAAFN 261

Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINA-SIEENTVYITIRIVGQFISASYDKDNLL 195
             N S++ RK  +  + ++++   D ++  A  +EE++ +       Q I+   +K++ +
Sbjct: 262 SLNSSINERKKKKLFLDTNVLIYKDHELKGAQRMEESSPWFIFTFHTQQINCLKNKNDEI 321

Query: 196 ISSDPEIFGKV 206
           +    +   +V
Sbjct: 322 VEGKIDDIREV 332


>gi|317153060|ref|YP_004121108.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316943311|gb|ADU62362.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 258

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 75  NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134
           ++  P G     V +    V   FD  +FL  A+  +        +G +  +   +   V
Sbjct: 114 SKDAPEGGAPQAVRQSPAPVPGGFDEAEFLEGAKLFFSRFQQVSGQGDLDQLRGFLSDDV 173

Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNL 194
           Y+     L+ ++     +  + V + D +++    E    +IT+    Q           
Sbjct: 174 YEQALAGLAAQQ----TIARTEVMLVDARLMERKSEGGRTWITVFYDAQLR--------K 221

Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
            +S D     +    W F R     +  W L
Sbjct: 222 GVSGDQPYQLRAA--WEFSRTDAEGSGLWTL 250


>gi|221056238|ref|XP_002259257.1| Mitochondrial import inner membrane translocase [Plasmodium
           knowlesi strain H]
 gi|193809328|emb|CAQ40030.1| Mitochondrial import inner membrane translocase,putative
           [Plasmodium knowlesi strain H]
          Length = 467

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 54/131 (41%), Gaps = 10/131 (7%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA-----IVDSFFEGKVHAIEKLVDSRVYQ 136
           T L   +R++     +F   + +      +E      IV+S+  G    +        + 
Sbjct: 306 TELAAALREMKMYDQNFKLSELM----YLFEFVISKHIVESYLIGDEETLRVHCGQSAFN 361

Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINA-SIEENTVYITIRIVGQFISASYDKDNLL 195
             N S++ RK  +  + ++++   + ++  A  +EE++ +       Q I+   + ++ +
Sbjct: 362 SLNASINERKKKKVYLDTNVLIYKNHELKGAQRMEESSPWFIFTFHTQQINCLKNANDEI 421

Query: 196 ISSDPEIFGKV 206
           I  + +   +V
Sbjct: 422 IEGNIDDIREV 432


>gi|229365490|dbj|BAH57996.1| hypothetical protein [Acetobacter lovaniensis]
          Length = 130

 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 2/117 (1%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I  ++ +  + A++++    +   FN+ LS   S       S V      +  A  E   
Sbjct: 13  IQTAWNQQNIAAMQQMATPEMVSYFNEQLSALASQGARNVVSDVHFIQGDLAEAWRENGM 72

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            + T+ +    I  + +    +I         + ++WTF R  P     W+L + + 
Sbjct: 73  DFATVAMRYSLIDLTTNAMGQVIQGSSTEPVNITELWTFTR--PSRGGRWLLSAIQQ 127


>gi|77461866|ref|YP_351373.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
           fluorescens Pf0-1]
 gi|77385869|gb|ABA77382.1| putative exported protein [Pseudomonas fluorescens Pf0-1]
          Length = 292

 Score = 64.1 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 75/220 (34%), Gaps = 32/220 (14%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           F IL+ A I F +F   R +  ++    +     F+      +R+         G     
Sbjct: 103 FDILIMAVIAFVIF---RFIAARR----RKQQEQFAPAGAPMQREVFEQKPAAMGSIFG- 154

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
                     G+      R +++    F+ + FL  AR+ ++A+   +   ++  I + V
Sbjct: 155 ----------GSAAPAAARPVINAPAWFNEQRFLEAARSHFQALQQHWDANEMDKIAEFV 204

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
             ++++        R       +S+ +    +++       +    T+   G   ++ +D
Sbjct: 205 TPQMFEFLKR---ERAELGDAFQSTYIDNLQVQLDGVDDRADKTIATLTFNGVSKTSRFD 261

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           +   + S            W   R    + P W++   + 
Sbjct: 262 QQGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 290


>gi|68070005|ref|XP_676914.1| mitochondrial import inner membrane translocase, [Plasmodium
           berghei strain ANKA]
 gi|56496822|emb|CAH94869.1| mitochondrial import inner membrane translocase, putative
           [Plasmodium berghei]
          Length = 355

 Score = 64.1 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 53/131 (40%), Gaps = 10/131 (7%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA-----IVDSFFEGKVHAIEKLVDSRVYQ 136
           T L   +R +     +F   + +      +E      IV+S+  G    +        + 
Sbjct: 194 TELAAALRIMKMDDKNFKLSELM----YLFEFVISKHIVESYLIGDEDTLRLHCGEAAFN 249

Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINA-SIEENTVYITIRIVGQFISASYDKDNLL 195
             N S++ RK  +  + ++++   + ++  A  +EE++ +       Q I+   +KD+ +
Sbjct: 250 SLNSSINERKKKKLFLDTNVLIYKNHELKGAQRMEESSPWFIFTFHTQQINCLKNKDDEI 309

Query: 196 ISSDPEIFGKV 206
           +    +   +V
Sbjct: 310 VEGKIDDIREV 320


>gi|302036897|ref|YP_003797219.1| hypothetical protein NIDE1559 [Candidatus Nitrospira defluvii]
 gi|300604961|emb|CBK41294.1| conserved exported protein of unknown function [Candidatus
           Nitrospira defluvii]
          Length = 343

 Score = 64.1 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 56/138 (40%), Gaps = 23/138 (16%)

Query: 108 RNSYEA----IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163
           + +++     I  ++ +  + A+ +LV   + + F+  L+         +     ++D+ 
Sbjct: 212 KAAFQQSLTDIQTAWGQQDLSALRRLVTPEMLEYFSTGLAE-----LTSQDQANRVEDVV 266

Query: 164 IINASIEENTVYITIRI-------VGQFISASYDK----DNLLISSDPEIFGKVIDIWTF 212
           ++ A + E+ V  T++          +  + S  K       LI    E   +  ++WTF
Sbjct: 267 LLQAEVRESWVENTVQYATVSLHWSARDYTVSLSKAPGDAGYLIEGSAEKPIETTEVWTF 326

Query: 213 VRNIPPSNPNWVLISTKL 230
           +R     +  W+L + + 
Sbjct: 327 MR---YQHGKWLLSAIQQ 341


>gi|323524735|ref|YP_004226888.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
           CCGE1001]
 gi|323381737|gb|ADX53828.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
           CCGE1001]
          Length = 330

 Score = 64.1 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 74/219 (33%), Gaps = 22/219 (10%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           +++ A +       +R  +G+K    +P     S           G     +  +     
Sbjct: 129 VIVIAVLAMIGIWLVRRFMGRKRDASQPAYAGHSPSL------NSGAAGYTQEPRYTAPP 182

Query: 73  SINELFPIGTRLNK-VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
           + + L P G  L    +    SV   FD   FL  A+  +  +  ++  G +  I +   
Sbjct: 183 TGSYLEPQGNPLTTPSVNATPSVPAGFDSDAFLRNAKVYFVRLQAAWDVGNIDDIREFTT 242

Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
             ++ +    L++R +  +  ++ +V ++   ++      N  + ++R            
Sbjct: 243 PEMFAEVRVDLASRGA--EKNQTDVVQLN-ADLLGVEERANEYFASVRFS---------- 289

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             L+  +        +++W   +        W+L   + 
Sbjct: 290 -GLIREAPGAAAEPFVEVWNLSK-ANRPGEGWLLAGIQQ 326


>gi|261856484|ref|YP_003263767.1| import inner membrane translocase subunit Tim44 [Halothiobacillus
           neapolitanus c2]
 gi|261836953|gb|ACX96720.1| import inner membrane translocase subunit Tim44 [Halothiobacillus
           neapolitanus c2]
          Length = 295

 Score = 64.1 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 70/222 (31%), Gaps = 36/222 (16%)

Query: 10  DFLILLFAFITFFVFLQ-LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
           DF+I+    +  F+ ++ LR                 S +   S        T+     +
Sbjct: 103 DFIIIALFALGAFMLIRALR----------------KSSQSAASPYARSTAGTMADQAPQ 146

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
            +          G+        + +    F+   FL  A+  +  +  ++    +  +++
Sbjct: 147 PSSIGSFSNSSAGSAQA----PLPNAPAWFNEDSFLQGAKAHFTNLQRAWDANDLKTMQE 202

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
                ++ +       R         + V   + ++++ S E +++  ++   G      
Sbjct: 203 YFTPELFLELAR---ERARIGDENNVTEVQSLNAQLLDLSREGDSIVASVLFQG------ 253

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                 ++  D      + +IW        +  +W+++  + 
Sbjct: 254 ------MVREDYGQPEPIAEIWHVRHTADSAQGDWLIVGIQQ 289


>gi|324517598|gb|ADY46868.1| Import inner membrane translocase subunit tim-44 [Ascaris suum]
          Length = 323

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 51/151 (33%), Gaps = 24/151 (15%)

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVH 124
           +   D I  +F   + +++V+ +I  +   FD  ++L       E I   +++F  G + 
Sbjct: 193 RGVTDRITSVFTTKSEVSEVLTEIAKIDPSFDKVEWLRFCER--EVIPNVLEAFIRGDLK 250

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNE-KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
            ++     R Y      +   K        S ++ I  ++                    
Sbjct: 251 ILQDWCHERAYNALAAVVKEYKKVNFSTADSRVIDISKVE------------------AF 292

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVR 214
            I+   + +  ++  D     +V  +W   R
Sbjct: 293 MINVVKNLEGKVVQGDENNPVRVHHVWVMCR 323


>gi|193078111|gb|ABO13052.2| putative membrane protein [Acinetobacter baumannii ATCC 17978]
          Length = 326

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 70/226 (30%), Gaps = 34/226 (15%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFS--GFFSGKYVFSKRDERGIITLGKGKKKDN 70
           +LL A + FFVF        +K G++K  +    ++          R       G   + 
Sbjct: 128 VLLAAAVAFFVF--------RKLGSKKKLAANNPYAPNNGGQNPFGRSAAPTNTGDNTNI 179

Query: 71  LDS-----INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                        P G+        +       +P  FL  AR  +  I        +  
Sbjct: 180 FGQSVGGGAATQAPFGSATTNSGNQLPD---GSEPASFLRVARQRFNHIQSINSASNIEE 236

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           I + +   +Y    + +   +  +    +    ++ M + +A+ E     +++R      
Sbjct: 237 IRRYLTPELYNSMYNDIMENQDQDV---AEFSNLNAMVVDSAT-ENGQYIVSVRF----- 287

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
                    +      +     +IW FV+ +     +WV+   +  
Sbjct: 288 ------TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 326


>gi|169795016|ref|YP_001712809.1| hypothetical protein ABAYE0855 [Acinetobacter baumannii AYE]
 gi|184159199|ref|YP_001847538.1| hypothetical protein ACICU_02879 [Acinetobacter baumannii ACICU]
 gi|213158321|ref|YP_002320372.1| hypothetical protein AB57_3049 [Acinetobacter baumannii AB0057]
 gi|260556495|ref|ZP_05828713.1| conserved hypothetical protein [Acinetobacter baumannii ATCC 19606]
 gi|301345393|ref|ZP_07226134.1| hypothetical protein AbauAB0_04094 [Acinetobacter baumannii AB056]
 gi|301511593|ref|ZP_07236830.1| hypothetical protein AbauAB05_08443 [Acinetobacter baumannii AB058]
 gi|301594787|ref|ZP_07239795.1| hypothetical protein AbauAB059_03222 [Acinetobacter baumannii
           AB059]
 gi|332854286|ref|ZP_08435286.1| hypothetical protein HMPREF0021_02869 [Acinetobacter baumannii
           6013150]
 gi|332865662|ref|ZP_08436488.1| hypothetical protein HMPREF0020_00093 [Acinetobacter baumannii
           6013113]
 gi|332876029|ref|ZP_08443815.1| hypothetical protein HMPREF0022_03458 [Acinetobacter baumannii
           6014059]
 gi|169147943|emb|CAM85806.1| conserved hypothetical protein; putative exported protein
           [Acinetobacter baumannii AYE]
 gi|183210793|gb|ACC58191.1| uncharacterized protein conserved in bacteria [Acinetobacter
           baumannii ACICU]
 gi|213057481|gb|ACJ42383.1| conserved hypothetical protein [Acinetobacter baumannii AB0057]
 gi|260409754|gb|EEX03054.1| conserved hypothetical protein [Acinetobacter baumannii ATCC 19606]
 gi|323519143|gb|ADX93524.1| hypothetical protein ABTW07_3101 [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332728102|gb|EGJ59491.1| hypothetical protein HMPREF0021_02869 [Acinetobacter baumannii
           6013150]
 gi|332735183|gb|EGJ66263.1| hypothetical protein HMPREF0020_00093 [Acinetobacter baumannii
           6013113]
 gi|332735895|gb|EGJ66936.1| hypothetical protein HMPREF0022_03458 [Acinetobacter baumannii
           6014059]
          Length = 325

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 70/226 (30%), Gaps = 34/226 (15%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFS--GFFSGKYVFSKRDERGIITLGKGKKKDN 70
           +LL A + FFVF        +K G++K  +    ++          R       G   + 
Sbjct: 127 VLLAAAVAFFVF--------RKLGSKKKLAANNPYAPNNGGQNPFGRSAAPTNTGDNTNI 178

Query: 71  LDS-----INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                        P G+        +       +P  FL  AR  +  I        +  
Sbjct: 179 FGQSVGGGAATQAPFGSATTNSGNQLPD---GSEPASFLRVARQRFNHIQSINSASNIEE 235

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           I + +   +Y    + +   +  +    +    ++ M + +A+ E     +++R      
Sbjct: 236 IRRYLTPELYNSMYNDIMENQDQDV---AEFSNLNAMVVDSAT-ENGQYIVSVRF----- 286

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
                    +      +     +IW FV+ +     +WV+   +  
Sbjct: 287 ------TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 325


>gi|92118080|ref|YP_577809.1| import inner membrane translocase, subunit Tim44 [Nitrobacter
           hamburgensis X14]
 gi|91800974|gb|ABE63349.1| import inner membrane translocase, subunit Tim44 [Nitrobacter
           hamburgensis X14]
          Length = 312

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 9/127 (7%)

Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164
            ++E     I  ++    V+ +  L    +   F + L    +     K S V +    +
Sbjct: 189 EAFERLLGEIQTAWSNEDVNTLHTLATPEMVSYFTEDLRANDARGVVNKVSDVKLLQGDL 248

Query: 165 INASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223
             A  E  T Y T+ +    I  + ++    ++    +   +V D+WTF R        W
Sbjct: 249 AEAWREGTTDYATVALRYSLIDKTTERASGRVVEGS-DQPQEVTDVWTFARLGGGK---W 304

Query: 224 VLISTKL 230
            L + + 
Sbjct: 305 ELSAIQQ 311


>gi|126642670|ref|YP_001085654.1| hypothetical protein A1S_2635 [Acinetobacter baumannii ATCC 17978]
          Length = 291

 Score = 63.7 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 70/226 (30%), Gaps = 34/226 (15%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFS--GFFSGKYVFSKRDERGIITLGKGKKKDN 70
           +LL A + FFVF        +K G++K  +    ++          R       G   + 
Sbjct: 93  VLLAAAVAFFVF--------RKLGSKKKLAANNPYAPNNGGQNPFGRSAAPTNTGDNTNI 144

Query: 71  LDS-----INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                        P G+        +       +P  FL  AR  +  I        +  
Sbjct: 145 FGQSVGGGAATQAPFGSATTNSGNQLPD---GSEPASFLRVARQRFNHIQSINSASNIEE 201

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           I + +   +Y    + +   +  +    +    ++ M + +A+ E     +++R      
Sbjct: 202 IRRYLTPELYNSMYNDIMENQDQDV---AEFSNLNAMVVDSAT-ENGQYIVSVRF----- 252

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
                    +      +     +IW FV+ +     +WV+   +  
Sbjct: 253 ------TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 291


>gi|290983241|ref|XP_002674337.1| predicted protein [Naegleria gruberi]
 gi|284087927|gb|EFC41593.1| predicted protein [Naegleria gruberi]
          Length = 520

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 59/180 (32%), Gaps = 10/180 (5%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA- 113
           D R      K  K++++          +     M         FD    L     + E  
Sbjct: 334 DARTAQEKVKKSKEEDIPDTEADISSTSENALAMGAFKKRDPRFDLDLLL----VTMETL 389

Query: 114 ----IVDSFFEGKVHAIEKLVDSRVY-QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS 168
               I+ ++F    H I+K V    Y Q F   +  R   +    + ++ ++D+ +    
Sbjct: 390 IIPEIMSAYFNDDAHTIKKFVSESCYRQVFFPRIQERVHTKIKYDAKILHVEDVMLYTTR 449

Query: 169 IEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            +     + I    Q+I    ++   ++   P+   K   +W   ++      +W +   
Sbjct: 450 YDAGNPALVISCAVQYIHCMKNEAGEIVEGGPKDIRKENQMWILKQDESQETDDWYVSEV 509


>gi|170743208|ref|YP_001771863.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           sp. 4-46]
 gi|168197482|gb|ACA19429.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           sp. 4-46]
          Length = 316

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 61/184 (33%), Gaps = 18/184 (9%)

Query: 53  KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
           +R +      G   +       N +  +G    +             P DF      ++E
Sbjct: 143 RRRQAEPAMAGGYARSGPPPGPNPMTGLGGGGARPAGPPQRDQVGISPADF-----EAFE 197

Query: 113 ----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS 168
                I  ++    V  + +L    +   F + L    +     + + V +    +  A 
Sbjct: 198 RSLTQIQLAYGAEDVGTLRRLATPEMAGYFTEELQANAARGVINRIADVKLLQGDLSEAW 257

Query: 169 IEENTVYITI--RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226
            E  T Y T+  R   + ++       ++ + DPE      +IWTF R+       W+L 
Sbjct: 258 REGPTDYATVAMRYALRDVTVERGSGRVVANGDPEAV----EIWTFRRDRGGP---WLLS 310

Query: 227 STKL 230
           + + 
Sbjct: 311 AIQQ 314


>gi|332374642|gb|AEE62462.1| unknown [Dendroctonus ponderosae]
          Length = 325

 Score = 63.4 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 65/184 (35%), Gaps = 17/184 (9%)

Query: 48  KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107
            YV  + D +      +G K++ +          +R    +R I     DFD  +F   A
Sbjct: 104 PYVPPEGDGKVSPISAQGAKQNLV-----FLEKKSRTMLAVRKIRQYDEDFDGPEFCKSA 158

Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV-GIDDMKIIN 166
            + Y  + +         +   +  R Y +   ++       K ++   +  I+  +I++
Sbjct: 159 TDIYIKMHECMAANDKETLINYITERAYPEVVHNID-----NKTLRWKYLKDIELPRIVH 213

Query: 167 ASI------EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN 220
           A        +     +T+R   Q   A YD+   L+     +   V++   F +++    
Sbjct: 214 ARNTEVITPDNVFAQVTVRFHTQQTLAIYDRFGRLMHGSEILAKDVLEYVVFEKHLSNQY 273

Query: 221 PNWV 224
             W 
Sbjct: 274 GLWR 277


>gi|167561581|ref|ZP_02354497.1| Tim44-like domain family protein [Burkholderia oklahomensis EO147]
          Length = 324

 Score = 63.4 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 69/237 (29%), Gaps = 30/237 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
           F  M +   +I L A    ++  +       + G ++P               +   +  
Sbjct: 105 FASMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPSQSRGGYGQDAGVPR 160

Query: 63  GKGKKKDNLDSINELFPIGTRL---------NKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
                     S +       R+                 +V   FD + FL  A+  +  
Sbjct: 161 QAASNDAFPGSGSAYAGEAQRMFGGAAAATTAAAAAAAPAVPAGFDAEAFLRNAKVYFVR 220

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           +  ++ EG +  I +     ++ +    L  R +     ++ +V + D +++        
Sbjct: 221 LQAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGE 277

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            + ++R  G       +                 ++W   +     +  W+L   + 
Sbjct: 278 HFASVRFHG----LIREAQGASAE-------PFEEVWNLSK---SGSQGWLLAGIQQ 320


>gi|195112778|ref|XP_002000949.1| GI22249 [Drosophila mojavensis]
 gi|193917543|gb|EDW16410.1| GI22249 [Drosophila mojavensis]
          Length = 362

 Score = 63.4 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 80/209 (38%), Gaps = 21/209 (10%)

Query: 28  RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83
           RGVL  +   E+PF    +G     YV  + D +  I    G K+       E     ++
Sbjct: 87  RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISSSGAKQKL-----EFLEKKSK 141

Query: 84  LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
               +R I S   +F   DF  +A+  Y A        + + I + V  R Y +   ++ 
Sbjct: 142 SLMAIRKIRSYEENFSTDDFGAQAQEIYIAAHTHMAAKEKYKIREFVSERCYPEMMHNVK 201

Query: 144 TRKSNEKNVKSSLV-GIDDMKIINASI------EENTVYITIRIVGQFISASYDKDNLLI 196
                 K +    +  ++  ++++A +      E     +T+R   Q + A YD+   L+
Sbjct: 202 D-----KTIHWRFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHTQQMLAIYDRFGRLM 256

Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
                +   V++   F ++I      W L
Sbjct: 257 HGSEILSKDVLEYVVFEKHISNEYGKWRL 285


>gi|296115092|ref|ZP_06833734.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295978429|gb|EFG85165.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 325

 Score = 63.4 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 43/117 (36%), Gaps = 2/117 (1%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           +  ++ +  + A++ +    +   F+  L+   S       S V  ++  +  +  E   
Sbjct: 208 VQAAWSQQNLGALQHMATPEMVSYFSHQLTDLASRGARNVVSDVRFENGDLTESWQENGM 267

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            Y T+ +    I  + D    +I         V ++WTF R        W++ + + 
Sbjct: 268 DYATVAMRYSLIDMTTDMTGHVIDGSSTERTVVTELWTFER--SSRGGTWLVSAIQQ 322


>gi|163854788|ref|YP_001629086.1| hypothetical protein Bpet0483 [Bordetella petrii DSM 12804]
 gi|163258516|emb|CAP40815.1| conserved hypothetical protein [Bordetella petrii]
          Length = 332

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 67/221 (30%), Gaps = 20/221 (9%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              +++FA +  F+  +LRGV G +   +  +           ++               
Sbjct: 125 LIGLVVFAVL--FIVRRLRGV-GPRHATQGAYGAARQEHAGQGQQPMWRQSAGASAGSAA 181

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
           +  +     P          +   +  DF+  +FL +A+  +  I   +  G    + + 
Sbjct: 182 SPAAAAAPAPAAGLPAADDDNNWYIPGDFNTTEFLKKAKEQFVQIQAIWDSGDTDRLREF 241

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           +   +  +    L+ R +     +  L+     +++      +    ++R  G       
Sbjct: 242 LTDDLIAELKQQLAERGAAPNQTEVVLLN---AELLGIETVSDGHLASVRFSGMLR---- 294

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                   +      +  +IW       P    W+L   + 
Sbjct: 295 -------EAPGTEAFRFEEIWNL---FKPQQGGWLLAGIQQ 325


>gi|257094387|ref|YP_003168028.1| import inner membrane translocase subunit Tim44 [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046911|gb|ACV36099.1| import inner membrane translocase subunit Tim44 [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 300

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 76/225 (33%), Gaps = 34/225 (15%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              +L+ A +   +   +R    ++   ++P      G    +     G +   +     
Sbjct: 108 MIGLLVVA-VMVAIGFVMR----RRAAAQQPALAGAGGFQYAAPDALNGGMARVEAGPSM 162

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
              +  E    G  +            DFD + F+  A+ S+  +  +   G +  I + 
Sbjct: 163 PAGTSTEAVTAGGNIPA----------DFDVEGFVRNAKISFIRLQAANDAGNLDDIREF 212

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
               ++ +   +++ R       ++ +V I D ++++ + EE+   +++R          
Sbjct: 213 TTPEMFAEVRMNIADRGPV--AQETDVVSI-DAQVLDVAEEESRYLVSVRF--------- 260

Query: 190 DKDNLLISSDPEIFGKVIDIWTF--VRNIPPSNPNWVLISTKLGE 232
               L+          V +IW     R+       WVL   +  +
Sbjct: 261 --TGLIREDKAAAPEPVDEIWHLIKPRDGKSG---WVLAGIQQVQ 300


>gi|328767960|gb|EGF78008.1| hypothetical protein BATDEDRAFT_91206 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 264

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 58/148 (39%), Gaps = 11/148 (7%)

Query: 90  DIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST----- 144
            + +    + P+ F  EA   Y A+  ++  G    +   V   +    +  +       
Sbjct: 107 QVKTTTKGWKPRAFAIEAEKLYIAMNKAYARGDRAELSNCVTDGMMSALSPEIKAMQRIG 166

Query: 145 ---RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201
                SN  + +  +V +   K+   + +     IT+R+  +   A+Y KD+ LI+ +P+
Sbjct: 167 KFVWDSNGSDRRPQVVHLATAKVATETGDMRLSQITVRVNVRQSMATY-KDDTLIAGNPD 225

Query: 202 IFGKVIDIWTFVR--NIPPSNPNWVLIS 227
            +  +++     +  +   +N  W +  
Sbjct: 226 TYTSIVEHIVMEKWLDGKWANRPWKIAG 253


>gi|195444564|ref|XP_002069925.1| GK11306 [Drosophila willistoni]
 gi|194166010|gb|EDW80911.1| GK11306 [Drosophila willistoni]
          Length = 337

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 79/209 (37%), Gaps = 21/209 (10%)

Query: 28  RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83
           RGVL  +   E+PF    +G     YV  + D +  +    G K+       E     ++
Sbjct: 78  RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSLISSSGAKQKL-----EFLEKKSK 132

Query: 84  LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
               +R I S    F   +F + A+  Y A        + + I + V  R Y +   ++ 
Sbjct: 133 SLMAVRKIRSYEESFSTDEFGDHAQEIYIAAHTHMAAREKYKIREFVSERCYPEMMHNVK 192

Query: 144 TRKSNEKNVKSSLV-GIDDMKIINASI------EENTVYITIRIVGQFISASYDKDNLLI 196
                 K +    +  ++  ++++A +      E     +T+R   Q + A YD+   L+
Sbjct: 193 D-----KTIHWRFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHTQQMLAIYDRFGRLM 247

Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
                +   V++   F ++I      W L
Sbjct: 248 HGSEILTKDVLEYVVFEKHISNEYGKWRL 276


>gi|82706055|ref|XP_727222.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23482963|gb|EAA18787.1| Drosophila melanogaster CG11779 gene product, putative [Plasmodium
           yoelii yoelii]
          Length = 443

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 53/131 (40%), Gaps = 10/131 (7%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA-----IVDSFFEGKVHAIEKLVDSRVYQ 136
           T L   +R +     +F   + +      +E      IV+S+  G    +        + 
Sbjct: 282 TELAAALRVMKMDDKNFKLSELM----YLFEYVISKHIVESYLIGDEDTLRLHCGEAAFN 337

Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINA-SIEENTVYITIRIVGQFISASYDKDNLL 195
             N S++ RK  +  + ++++   + ++  A  +EE++ +       Q I+   +KD+ +
Sbjct: 338 SLNLSITERKKKKLFLDTNVLIYKNHELKGAQRMEESSPWFIFTFHTQQINCLKNKDDEI 397

Query: 196 ISSDPEIFGKV 206
           I    +   +V
Sbjct: 398 IEGKIDDIREV 408


>gi|256113826|ref|ZP_05454619.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis bv. 3 str. Ether]
 gi|265995175|ref|ZP_06107732.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis bv. 3 str. Ether]
 gi|262766288|gb|EEZ12077.1| import inner membrane translocase subunit Tim44 [Brucella
           melitensis bv. 3 str. Ether]
          Length = 342

 Score = 63.0 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 68/221 (30%), Gaps = 9/221 (4%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL  A I   V   +R    ++           +  +  S+         G+G       
Sbjct: 130 ILQVAVIALIVMFVMRMFANRRQTAAAGAGHAGAQPFGASQPFGSAKSASGQGSFSGRTP 189

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
           S+N           V  + + V  + D   F          I   +      A+ KL   
Sbjct: 190 SVNPFETKQAAAPVVEDEPMDVGQE-DLDRF----EQMLVDIQGGYGREDYAALRKLTTP 244

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
                  + L    S  K  +   V +    +  A  E N  Y T+ +    I    D+ 
Sbjct: 245 EAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAIDVMVDRT 304

Query: 193 -NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
              ++  +P    + +++WTF R    +   W L + +  E
Sbjct: 305 SGAVVEGNPNEPVESVELWTFTRTDGGA---WQLAAIQGTE 342


>gi|47214080|emb|CAF95337.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 223

 Score = 62.6 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 18/161 (11%)

Query: 75  NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF---EGKVHAIEKLVD 131
            E           +R I    ++F  KDF   A  + E  +++           +  L+ 
Sbjct: 28  TEQIRQSAASQLAIRKIKDHDSEFSTKDF---AEQAQEIFIEAHNCLTNFNKEKLHSLLT 84

Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLV-GIDDMKIINASIEENT------VYITIRIVGQF 184
            R Y +      TR +  K ++   V  ++  K+++A   +          +T+R+  + 
Sbjct: 85  ERCYPE-----MTRGNRYKTIRWRFVESLELPKVVHARCPDMVSKGNLYGQVTVRMHSRQ 139

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
             A YD+   L+  + E    V++     R++      W L
Sbjct: 140 TLAIYDRFGRLMLGNEEQPKDVLEYLVLERHLVNPYGRWRL 180


>gi|167568817|ref|ZP_02361691.1| Tim44-like domain family protein [Burkholderia oklahomensis C6786]
          Length = 325

 Score = 62.6 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 69/237 (29%), Gaps = 29/237 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
           F  M +   +I L A         +R  + ++   ++P               +   +  
Sbjct: 105 FASMMANVIVIALLAMAG---IWLVRKFMNRRGAQQQPAYAGGQPSQSRGGYGQDAGVPR 161

Query: 63  GKGKKKDNLDSINELFPIGTRL---------NKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
                     S +       R+                 +V   FD + FL  A+  +  
Sbjct: 162 QAASNDAFPGSGSAYAGEAQRMFGGAAAATTAAAAAAAPAVPAGFDTEAFLRNAKVYFVR 221

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           +  ++ EG +  I +     ++ +    L  R +     ++ +V + D +++        
Sbjct: 222 LQAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGE 278

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            + ++R  G       +                 ++W   +     +  W+L   + 
Sbjct: 279 HFASVRFHG----LIREAQGASAE-------PFEEVWNLSK---SGSQGWLLAGIQQ 321


>gi|300692535|ref|YP_003753530.1| hypothetical protein RPSI07_2910 [Ralstonia solanacearum PSI07]
 gi|299079595|emb|CBJ52273.1| conserved membrane protein of unknown function [Ralstonia
           solanacearum PSI07]
          Length = 345

 Score = 62.6 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 76/249 (30%), Gaps = 44/249 (17%)

Query: 8   SGDFLILLFAFITFFVFLQLRGV-------------LGKKTGNEKPFSGFFSGKYVFSKR 54
           S   LI + AF+  ++  +LRG              LG   G+ +P+    +        
Sbjct: 113 SNLILIAIIAFVVMWIIRKLRGSRPQEPAYATGGPSLG---GDREPYVPSPAVPAAQPAA 169

Query: 55  DERGIITLGKGKKKDNLDSINELF--------PIGTRLNKVMRDIVSVYT-----DFDPK 101
                I  G       L +  +          P     N  +    S        DFD +
Sbjct: 170 PVASSIDTGSTGSTSGLGAGAQTAAQAWSLGGPAAPTANAPVAAPASQQPWGVPADFDTQ 229

Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDD 161
            FL  A+  +  +  ++    ++ I +     ++ +    L+ R +      + +V + +
Sbjct: 230 AFLRNAKVYFIRLQAAWDTANLNDIREFTTPEMFAEIKMDLADRGTAPNK--TDVVSV-E 286

Query: 162 MKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP 221
            +++           ++R              ++            ++W   + I  S  
Sbjct: 287 AELLGIETSPTEYLASVRF-----------AGMIREEANAPAQPFAEVWNLTKPIQGSG- 334

Query: 222 NWVLISTKL 230
            WVL   + 
Sbjct: 335 GWVLAGIQQ 343


>gi|254470189|ref|ZP_05083593.1| import inner membrane translocase, subunit Tim44 [Pseudovibrio sp.
           JE062]
 gi|211960500|gb|EEA95696.1| import inner membrane translocase, subunit Tim44 [Pseudovibrio sp.
           JE062]
          Length = 351

 Score = 62.6 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 68/199 (34%), Gaps = 26/199 (13%)

Query: 40  PFSGFFSGKYVFSKRDERGIITLGK--GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
           PF+   +G     +R     I      G +    +                 +I     D
Sbjct: 171 PFTFNDAGAQDAPRRSGSSGIPNTGFGGGQAPQFEEQPVFSTEADD------EIGLTADD 224

Query: 98  FDPKDFLNEARNSYEAIVD----SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153
           FD          ++EA++     ++       I ++    +   F + L    SN    +
Sbjct: 225 FD----------AFEALLTTVWTAYGSEDYGKIREIATPEIMGYFAEELGKAASNGLINE 274

Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTF 212
              + +    +  A  E +  Y ++ +  + I    ++  N ++  + ++  + I+IWTF
Sbjct: 275 VRDIKLLQGDLTEAWREGDKDYASVAMRYESIDVMRERATNKVVEGNADVPEERIEIWTF 334

Query: 213 VRNIPPSNPNWVLISTKLG 231
           +R       NW L + +  
Sbjct: 335 IRGAGE---NWQLSAIQQA 350


>gi|316932842|ref|YP_004107824.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
           palustris DX-1]
 gi|315600556|gb|ADU43091.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
           palustris DX-1]
          Length = 358

 Score = 62.6 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 59/190 (31%), Gaps = 22/190 (11%)

Query: 57  RGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-------- 108
           R       G       ++++    GT             + F    F   AR        
Sbjct: 173 RPDGADATGPMGRATHAMDQSAAQGTAQGTAQASQSGYRSGF---GFGGGARNDRPLEIK 229

Query: 109 ----NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160
                ++E     +  ++    +  + +L    +   F   L   K+     K S V + 
Sbjct: 230 PDDYEAFERLLGEVQAAWSNEDIDRLRELATPEMASYFAKDLEENKAANDINKVSDVKLL 289

Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN 220
              +  A  E  T + T+ +    +  + ++    + +  E   +  +IWTF R    S 
Sbjct: 290 QGDLAEAWTEGETDFATVAMRFSLVDKTLERGTDRLVAGSETPIEATEIWTFTRRPGAS- 348

Query: 221 PNWVLISTKL 230
             W L + + 
Sbjct: 349 --WELAAIQQ 356


>gi|156086672|ref|XP_001610745.1| mitochondrial inner membrane translocase subunit TIM44 [Babesia
           bovis T2Bo]
 gi|154797998|gb|EDO07177.1| mitochondrial inner membrane translocase subunit TIM44, putative
           [Babesia bovis]
          Length = 395

 Score = 62.6 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 54/127 (42%), Gaps = 2/127 (1%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           + L K ++++  + + FD  +F+    +     IV  + +G   ++E       +   N 
Sbjct: 234 STLAKAVKEMKRLDSSFDLPEFIESVEHVVAPHIVQCYLDGDSKSLEAHCGELAFNVLNA 293

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINA-SIEENTVYITIRIVGQFISASYDKDNLLISSD 199
           S+  R   +  +  +++ + D+++    ++EE   +       Q I+   D    +++ +
Sbjct: 294 SIRERDLQKLYLDPNILILKDVELKGGMTMEEGYPWFIFNFKTQQINCLRDSRGHVVAGE 353

Query: 200 PEIFGKV 206
            +   +V
Sbjct: 354 IDDIRQV 360


>gi|262373164|ref|ZP_06066443.1| conserved hypothetical protein [Acinetobacter junii SH205]
 gi|262313189|gb|EEY94274.1| conserved hypothetical protein [Acinetobacter junii SH205]
          Length = 322

 Score = 62.6 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 72/228 (31%), Gaps = 33/228 (14%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEK------PFSGFFSGKYVFSKRDERGIITLGKGK 66
           +LL A + FFVF        +K G +K      P++   +G+  F +             
Sbjct: 119 VLLAAAVAFFVF--------RKFGAKKKLATANPYAPNNNGQNNFGRPVSPQPTMRQTAG 170

Query: 67  KKDNLDSINELFPIGTRLNKVMRDIVSVYT---DFDPKDFLNEARNSYEAIVDSFFEGKV 123
              N+   +    + T+       + S        +P  FL  AR  +  I        V
Sbjct: 171 DNTNIFGQSVGGGVATQAPFGGASMSSGNQLPDGTEPAAFLRIARQRFNHIQSVNSASNV 230

Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
             I + +   +Y      +   +  +    +    ++   +  ++ E     +++R    
Sbjct: 231 EEIRRYLTPELYNSMYSDIMANQDQDV---AEFSNLN-AMVAESTTENGQYVVSVRF--- 283

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
                      +      +     +IW FV+ +     +WV+   +  
Sbjct: 284 --------TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 322


>gi|307543929|ref|YP_003896408.1| hypothetical protein HELO_1340 [Halomonas elongata DSM 2581]
 gi|307215953|emb|CBV41223.1| hypothetical protein HELO_1340 [Halomonas elongata DSM 2581]
          Length = 272

 Score = 62.6 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 51/172 (29%), Gaps = 18/172 (10%)

Query: 59  IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
            +    G         +      +        I      FD + FL  A+  +  +  ++
Sbjct: 115 AMAGANGTTSQASREADAQAFQSSASLGGTTHIGDEPAWFDRERFLGGAKEHFMTLQRAW 174

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
                  I+  V   +Y         R+ +  N ++ +V +   ++ +    +     T+
Sbjct: 175 DNNDFTLIQDYVTPELYNLLRQ---EREQHPANNRTEIVRLI-AELGSVRETDQQAEATV 230

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
              G       D++            +  + W  VR++    P W +   + 
Sbjct: 231 LFHG-----ILDENG--------AQNEFNETWHLVRDLRDGAP-WYVQGIEQ 268


>gi|156098709|ref|XP_001615370.1| mitochondrial import inner membrane translocase [Plasmodium vivax
           SaI-1]
 gi|148804244|gb|EDL45643.1| mitochondrial import inner membrane translocase, putative
           [Plasmodium vivax]
          Length = 461

 Score = 62.6 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 53/131 (40%), Gaps = 10/131 (7%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA-----IVDSFFEGKVHAIEKLVDSRVYQ 136
           T L   +R++     +F   + +      +E      IV+S+  G    +        + 
Sbjct: 300 TELAAALREMKMQDKNFKLCELM----YLFEFVISKHIVESYLIGDEETLRLHCGQSAFN 355

Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINA-SIEENTVYITIRIVGQFISASYDKDNLL 195
             N S++ RK  +  + ++++   + ++  A  +EE++ +       Q I+   + ++ +
Sbjct: 356 SLNASINERKKKKVYLDTNVLIYKNHELKGAQRMEESSPWFIFTFHTQQINCLKNANDEI 415

Query: 196 ISSDPEIFGKV 206
           +    +   +V
Sbjct: 416 VEGHIDDIREV 426


>gi|312385733|gb|EFR30159.1| hypothetical protein AND_00421 [Anopheles darlingi]
          Length = 340

 Score = 62.2 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 82/209 (39%), Gaps = 21/209 (10%)

Query: 28  RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83
           RG+L  +   E+PF    +G     YV  + D R      +G K+       E     T+
Sbjct: 86  RGILPPRPWLERPFYISCTGGVFEPYVPPEGDGRMSAISREGAKQAI-----EQLEKKTK 140

Query: 84  LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
               +R I S   DFD +DF  +A++ Y     +  E   + + ++V  R Y +   +++
Sbjct: 141 SMMAIRKIRSYDEDFDARDFATQAQDIYIQAHQTMCEKNKYKLREIVTERAYPELMHNVA 200

Query: 144 TRKSNEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLI 196
                 K ++   +       +   +  +   +EN    +T+R   Q + A YD+   L+
Sbjct: 201 D-----KTIRWQFIKSLEPPRVVHARCTDVITKENIFAQVTVRFHSQQLLAIYDRFGRLM 255

Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
                I    ++   F +++      W L
Sbjct: 256 HGSETIEKDCLEYVVFEKHLANEYGVWRL 284


>gi|297538333|ref|YP_003674102.1| import inner membrane translocase subunit Tim44 [Methylotenera sp.
           301]
 gi|297257680|gb|ADI29525.1| import inner membrane translocase subunit Tim44 [Methylotenera sp.
           301]
          Length = 290

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 66/218 (30%), Gaps = 27/218 (12%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
            +L A +   V + L          +KP            +            + +    
Sbjct: 96  TILMALLAAGVVMFLIS------KFKKPQPANNFNPSTVMQYAGESAYNAQDSQSQARSG 149

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
           +          +N       ++  +F    F+  A+ S+  +  +      + I +    
Sbjct: 150 ASGFGANAANSINS------NIPPNFPVDSFIRSAKASFIRLQAANDNKDSNDIREYTTP 203

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            V+ +    +  R +     K+ ++ I   +++  + +      ++R  GQ         
Sbjct: 204 EVFAEITMQMQERGNA--VQKTEVIAIQ-AELLEVNDDAVFSVASVRFTGQL-------- 252

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
               S +      + ++W   +++   N  W+L   + 
Sbjct: 253 ----SENNGTPENIDEVWHIQKHLHDENAKWLLAGIQQ 286


>gi|323137415|ref|ZP_08072493.1| import inner membrane translocase subunit Tim44 [Methylocystis sp.
           ATCC 49242]
 gi|322397402|gb|EFX99925.1| import inner membrane translocase subunit Tim44 [Methylocystis sp.
           ATCC 49242]
          Length = 336

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 62/222 (27%), Gaps = 18/222 (8%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
             +++F     F++   R           P          F      G     KG     
Sbjct: 131 IALVVFLARMAFMWWANRN---------APAGAGSRPGAPFGSMFTGGAPFGAKGPGAGG 181

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
             +         +  +    +     DF+  + L     +      ++    + A+  + 
Sbjct: 182 FRAAGFGSGAAPQGARA-TPLKVQAEDFNAFERLLGETQA------AYSREDLGALRMMS 234

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              +   F+D L   +      + S V +    +  A  E +  Y T+ +         D
Sbjct: 235 TPEMASYFDDELDENRRKGVVNRVSDVKLLQGDLSEAWREGSDEYATVAMRFSLNDVMED 294

Query: 191 KD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
           +         P    + +++WTF R        W L + +  
Sbjct: 295 RATGKPTPGSPGK-SEAVEVWTFRRPAGAGPQEWKLSAIQQA 335


>gi|159185868|ref|NP_356915.2| hypothetical protein Atu3705 [Agrobacterium tumefaciens str. C58]
 gi|159141002|gb|AAK89700.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 215

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 3/119 (2%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           +  ++       + KL          + LS   ++        V +    +  A  EE  
Sbjct: 98  VQSAYGAEDYGTLRKLTTPEAMSYLAEELSDNATSGVKNDVRDVTLLQGDVAEAWHEEGQ 157

Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
            Y T+ +    I    D+    +I  D     + +++WTFVR       NW + + +  
Sbjct: 158 DYATVAMRYSAIDIMRDRTSGKVIEGDEHKPSEAVEMWTFVRRPGND--NWQVAAIQAA 214


>gi|256083996|ref|XP_002578220.1| mitochondrial 39S ribosomal protein L45 [Schistosoma mansoni]
 gi|238663583|emb|CAZ34458.1| putative mitochondrial 39S ribosomal protein L45 [Schistosoma
           mansoni]
          Length = 327

 Score = 62.2 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 16/150 (10%)

Query: 86  KVMRDIVSVYTDFDPKDFLNEARNSYEA---IVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
           K +  + S    F+ K F  EA N Y     ++ ++ + +   + +LV  +   D    L
Sbjct: 126 KDLSLLKSHEPSFNSKRFTIEAENIYVEAHDLLQNYRQNE-SRLFELVTEKALVDMTADL 184

Query: 143 STRKSNEKNVKSSLVG-IDDMKIINAS-----IEENT-VYITIRIVGQFISASYDKDNLL 195
             R      ++   VG I+  +++         + N    +T+R   Q I + Y++   L
Sbjct: 185 KLR-----TLQWKFVGNIEPPRVVQIRCNELLSKGNVYAQVTVRFYTQQILSIYNRFGRL 239

Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
           +  +P+    V++   F R+I      W L
Sbjct: 240 LYGNPDTAVDVLEYVVFERHISDEYGTWRL 269


>gi|206559267|ref|YP_002230028.1| hypothetical protein BCAL0874 [Burkholderia cenocepacia J2315]
 gi|198035305|emb|CAR51180.1| putative membrane protein [Burkholderia cenocepacia J2315]
          Length = 343

 Score = 61.8 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 71/238 (29%), Gaps = 32/238 (13%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQL----------RGVLGKKTGNEKPFSGFFSGKYVFS 52
           F  M +   +I L A +  ++  +             V G  +      SG +S    F 
Sbjct: 124 FASMMANVIVIALLAMVGIWLIRKFMNRRRPQEPAYSVGGAASS-----SGGYSQSPSFQ 178

Query: 53  KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
           + +             +    +                 + V   FD + FL  A+  + 
Sbjct: 179 QGNAGSNYAGSGSSYANEAQGVFGGGAAAAGAAAAAAAPLQVPAGFDTEAFLRSAKVYFV 238

Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
            +  ++ +G +  I +     ++ +    L +R       ++ +V + D +++       
Sbjct: 239 RLQAAWDQGNLADIREFTTPEMFAEIKIDLDSR--GNDANQTDVVQL-DAELVAIEDRGI 295

Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
               ++R              L+  S         ++W   +     +  W+L   + 
Sbjct: 296 EQSASVRF-----------HGLIRESANTSAAPFDEVWNLSK---SGSQGWLLAGIQQ 339


>gi|254247237|ref|ZP_04940558.1| Mitochondrial import inner membrane translocase, subunit Tim44-like
           protein [Burkholderia cenocepacia PC184]
 gi|124872013|gb|EAY63729.1| Mitochondrial import inner membrane translocase, subunit Tim44-like
           protein [Burkholderia cenocepacia PC184]
          Length = 343

 Score = 61.8 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 71/238 (29%), Gaps = 32/238 (13%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQL----------RGVLGKKTGNEKPFSGFFSGKYVFS 52
           F  M +   +I L A +  ++  +             V G  +      SG +S    F 
Sbjct: 124 FASMMANVIVIALLAMVGIWLIRKFMNRRRPQEPAYSVGGAASS-----SGGYSQSPSFQ 178

Query: 53  KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
           + +             +    +                 + V   FD + FL  A+  + 
Sbjct: 179 QGNTGSNYAGSGSSYANEAQGVFGGGAAAAGAAAAAAAPLQVPAGFDTEAFLRSAKVYFV 238

Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
            +  ++ +G +  I +     ++ +    L +R       ++ +V + D +++       
Sbjct: 239 RLQAAWDQGNLADIREFTTPEMFAEIKIDLDSR--GNDANQTDVVQL-DAELVAIEDRGI 295

Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
               ++R              L+  S         ++W   +     +  W+L   + 
Sbjct: 296 EQSASVRF-----------HGLIRESANTSAAPFDEVWNLSK---SGSQGWLLAGIQQ 339


>gi|71909645|ref|YP_287232.1| import inner membrane translocase, subunit Tim44 [Dechloromonas
           aromatica RCB]
 gi|71849266|gb|AAZ48762.1| Mitochondrial import inner membrane translocase, subunit Tim44
           [Dechloromonas aromatica RCB]
          Length = 288

 Score = 61.8 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 71/220 (32%), Gaps = 33/220 (15%)

Query: 16  FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
            A +   V     GV+G           +F  K   + +              +N     
Sbjct: 99  MALLAVAVI----GVIG-----------YFMRKKAAASQQGGMQYAGANANYGNNAPHQP 143

Query: 76  ELFPIGTRLNKVMRDIVS---VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
           +  P G      +    +   +   FD + F+  A+ ++  +  S   G +  I +    
Sbjct: 144 DFIPAGGSAAAPLASATTGGNIPAGFDVEGFVRNAKVNFIRLQASNDAGNLDDIREFTSP 203

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
            ++ +    ++ R +     ++ +V ++  ++I+ + E +   +++R  G  I    D  
Sbjct: 204 EMFAEIKMEMAERGNA--KQETDVVQLN-AEVIDVAEEPSRYIVSVRFTG-LIREEKDAA 259

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
                          +IW   +    S   W L   +  +
Sbjct: 260 AAPFD----------EIWHMTKPTDNSR-GWTLAGIQQVQ 288


>gi|300313191|ref|YP_003777283.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gi|300075976|gb|ADJ65375.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score = 61.8 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 66/227 (29%), Gaps = 18/227 (7%)

Query: 6   MDSGDFLILLFAFI-TFFVFL-QLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
           M      +L  A +    +FL ++    G++  N  P                     +G
Sbjct: 106 MGGLLGSLLTIALLCAAVIFLIRMFA-RGREAQNNNPAYATPMPGVSPIGSAAGATPEIG 164

Query: 64  KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
            G +  N     +    G            +   FD   F+  A+  +  +  ++    V
Sbjct: 165 SGLRDINPPPALQGNAYGAAAQPAQIQQWGIPEGFDTAGFVRNAKTYFIRLQAAWDRADV 224

Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
           + I +     ++ +    L+ R        ++ V   D +++           T+R    
Sbjct: 225 NDIREFTTPEMFAELRMQLTER---GAAPNATDVVQLDAQLLGIETMAFDYLATVRF--- 278

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                     L+  +         +IW   + +  S   WVL   + 
Sbjct: 279 --------QGLIKEAPDVSAEPFAEIWNLSKPLNGSG-GWVLAGIQQ 316


>gi|296533885|ref|ZP_06896415.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
 gi|296265797|gb|EFH11892.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
          Length = 47

 Score = 61.4 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYV 50
            ++LFA +  F+ L+LR VLG++ G E+P     +    
Sbjct: 7  VDLILFAMVAAFLVLRLRSVLGRRQGFERPPQERPAPGQA 46


>gi|270158819|ref|ZP_06187476.1| transmembrane protein [Legionella longbeachae D-4968]
 gi|289166389|ref|YP_003456527.1| hypothtical protein [Legionella longbeachae NSW150]
 gi|269990844|gb|EEZ97098.1| transmembrane protein [Legionella longbeachae D-4968]
 gi|288859562|emb|CBJ13527.1| putative hypothtical protein [Legionella longbeachae NSW150]
          Length = 273

 Score = 61.4 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 80/225 (35%), Gaps = 46/225 (20%)

Query: 8   SGDFLILLFAFITFFV--FLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           SG    L+   + FFV  F + +   G +TG   PF+                       
Sbjct: 88  SGILSWLILGAVLFFVVGFFRRKMQPGYQTGQSSPFNQN--------------------- 126

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
              +N         +G   N     I      F P+ FL EA+ ++  +  ++ +  +  
Sbjct: 127 -PLNNFTQSFSNSSMGGNSNTSEYPI-----GFVPETFLREAKVTFNRLQAAYDQKNLQD 180

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           + +     V+ +    L  R        + ++ + D ++++ S + N+   ++R  G   
Sbjct: 181 LSEFTAPEVFAEIKMQLDERGDAPNK--TEVISL-DAELLDISKQSNSFIASVRFTG--- 234

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                     I  + E   ++ +IW F R  P S P W++   + 
Sbjct: 235 ---------SIKENDEQPSQLDEIWHF-RQFPNS-PQWLVGGVQQ 268


>gi|330961416|gb|EGH61676.1| Tim44-like domain-containing protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 280

 Score = 61.4 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 63/221 (28%), Gaps = 37/221 (16%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F IL+   I  F+  +      ++   ++P        Y             G      
Sbjct: 95  LFDILIMGLIA-FLIFRFIA---RRRQQQQPKMAAAGAPYQREASQPGQNPIFGSSAPAS 150

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
               IN                      F+ + FL  AR  ++A+   +   ++  I + 
Sbjct: 151 AAPVINAPA------------------WFNEERFLEAARGHFQALQQHWDANEMDKIAEF 192

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V  ++ Q        R       +S+ +    +++       +    T+   G   ++ +
Sbjct: 193 VTPQMLQFLK---KERADLGDGFQSTFIDNLSVQLDGVDDRADKTIATLTFSGVSKTSRF 249

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D    + S            W   R    + P W++   + 
Sbjct: 250 D-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 278


>gi|225707976|gb|ACO09834.1| 39S ribosomal protein L45, mitochondrial precursor [Osmerus mordax]
          Length = 315

 Score = 61.4 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 12/158 (7%)

Query: 75  NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134
            E           +R I    T F  K+F   A+  Y    ++  +     +  LV  R 
Sbjct: 114 TEQIRQSAASQLAVRKIKEHDTTFTTKEFPGHAQGIYIEAHNALTQFNKEKLHSLVTERC 173

Query: 135 YQDFNDSLSTRKSNEKNVKSSLV-GIDDMKIINAS-----IEENT-VYITIRIVGQFISA 187
           Y +      TR +  K ++ + V  ++  K+++A       + N    +T+RI  +   A
Sbjct: 174 YPE-----MTRANRYKTLRWTFVESLEPPKVVHARCPEMVSKGNLYGQVTLRIHSRQTLA 228

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
            YD+   L+    E    V++     R++      W L
Sbjct: 229 IYDRFGRLMLGSEEEPKDVLEYLVLERHLINPYGRWRL 266


>gi|291237324|ref|XP_002738585.1| PREDICTED: mitochondrial ribosomal protein L45-like [Saccoglossus
           kowalevskii]
          Length = 318

 Score = 61.4 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 53/143 (37%), Gaps = 13/143 (9%)

Query: 88  MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ----DFNDSLS 143
           +R I     +F+ KDF   A+ +    + +     +  I+  +   +++     F     
Sbjct: 138 LRKIRKFDPEFNTKDF---AKQAQHIFIKAHSA--LQDIKNFLLMNIHEDMVWGFKYKTV 192

Query: 144 TRKSNEKNVKSSLVGIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSDPEI 202
                E   K  +V I    +I+   + NT    T+R   +   A YD+   ++      
Sbjct: 193 RWNWVESIEKPRVVHIRCTDMIS---KGNTYAQATVRFHSKQTLAIYDRFGRIMQGSETS 249

Query: 203 FGKVIDIWTFVRNIPPSNPNWVL 225
              V++   F +++     +W +
Sbjct: 250 PKDVLEYVVFEKHLMDKYGSWRI 272


>gi|116249720|ref|YP_765558.1| putative transmembrane TIM family protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115254368|emb|CAK03999.1| putative transmembrane TIM family protein [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 331

 Score = 61.4 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 6/122 (4%)

Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
            +  ++       + +L          + L    +N      S V +    I  A  E+ 
Sbjct: 210 QVQTAYGAEDYGTLRRLTTPEAMSYLAEELGENATNGVRNSVSDVKLLQGDIAEAWREDG 269

Query: 173 TVYITI--RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             Y T+  R          D    ++S D     +  ++WTFVR        W L + + 
Sbjct: 270 QEYATLAMRYSSIDAMVERDS-GRVVSGDDRRPSESTEVWTFVRKSGAD---WKLAAIQG 325

Query: 231 GE 232
            E
Sbjct: 326 AE 327


>gi|90423037|ref|YP_531407.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris BisB18]
 gi|90105051|gb|ABD87088.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris BisB18]
          Length = 332

 Score = 61.4 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 13/129 (10%)

Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164
            ++E     I  ++  G V  +  L    +   F+  L+  K+     K S V +    +
Sbjct: 208 EAFEKLLSEIQTTWSNGDVGHLHTLATPEMVSYFSGDLAANKARGVENKVSDVKLLQGDL 267

Query: 165 INASIEENT--VYITIRIVGQFISASYD-KDNLLISSDPEIFGKVIDIWTFVRNIPPSNP 221
             A  E  T    + +R     +  + D     L+    E   +  ++WTF R       
Sbjct: 268 AEAWREGETDYASVAMRFS--LVDKTIDTATGKLVEGS-EQPTEATEVWTFARRRGSE-- 322

Query: 222 NWVLISTKL 230
            W L + + 
Sbjct: 323 -WELSAIQQ 330


>gi|170734093|ref|YP_001766040.1| import inner membrane translocase subunit Tim44 [Burkholderia
           cenocepacia MC0-3]
 gi|169817335|gb|ACA91918.1| import inner membrane translocase subunit Tim44 [Burkholderia
           cenocepacia MC0-3]
          Length = 343

 Score = 61.4 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 71/238 (29%), Gaps = 32/238 (13%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQL----------RGVLGKKTGNEKPFSGFFSGKYVFS 52
           F  M +   +I L A +  ++  +             V G  +      SG +S    F 
Sbjct: 124 FASMMANVIVIALLAMVGIWLIRKFMNRRRPQEPAYSVGGAASS-----SGGYSQSPSFQ 178

Query: 53  KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
           + +             +    +                 + V   FD + FL  A+  + 
Sbjct: 179 QGNTGSNYAGSGSSYANEAQGVFGGGAAAAGAAAAAAAPLQVPAGFDIEAFLRSAKVYFV 238

Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
            +  ++ +G +  I +     ++ +    L +R       ++ +V + D +++       
Sbjct: 239 RLQAAWDQGNLADIREFTTPEMFAEIKIDLDSR--GNDANQTDVVQL-DAELVAIEDRGI 295

Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
               ++R              L+  +         ++W   +     +  W+L   + 
Sbjct: 296 EQSASVRF-----------HGLIREAANTSAAPFDEVWNLSK---SGSQGWLLAGIQQ 339


>gi|196000530|ref|XP_002110133.1| hypothetical protein TRIADDRAFT_53791 [Trichoplax adhaerens]
 gi|190588257|gb|EDV28299.1| hypothetical protein TRIADDRAFT_53791 [Trichoplax adhaerens]
          Length = 304

 Score = 61.4 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 51/141 (36%), Gaps = 6/141 (4%)

Query: 91  IVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN-- 148
           I      F+  DF  +A   Y A  ++        +  L     + +   +   R+    
Sbjct: 139 IKRKAKPFNISDFKLQAEKIYIATNEALASQDKTRLHTLTTEIAFHELRSAFKNRQIKWQ 198

Query: 149 --EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
                    ++ I  + + + +       IT+++  + I A YD+ N L++   + + + 
Sbjct: 199 CLGTASAPRIINIRVIPLEDKT--NTFAQITVKLQLKQILAVYDQYNRLLTGSEDRYKQP 256

Query: 207 IDIWTFVRNIPPSNPNWVLIS 227
            +   F R++   N  W +  
Sbjct: 257 TEYVVFERHLAKPNSPWRICG 277


>gi|254693967|ref|ZP_05155795.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 3 str. Tulya]
          Length = 134

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 4/120 (3%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I   +      A+ KL          + L    S  K  +   V +    +  A  E N 
Sbjct: 18  IQGGYGREDYAALRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNV 77

Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            Y T+ +    I    D+    ++  +P    + +++WTF R    +   W L + +  E
Sbjct: 78  EYATVAMRYSAIDVVVDRTSGAVVEGNPNEPVESVELWTFTRTDGGA---WQLAAIQGTE 134


>gi|107023666|ref|YP_621993.1| import inner membrane translocase, subunit Tim44 [Burkholderia
           cenocepacia AU 1054]
 gi|116690751|ref|YP_836374.1| import inner membrane translocase, subunit Tim44 [Burkholderia
           cenocepacia HI2424]
 gi|105893855|gb|ABF77020.1| import inner membrane translocase, subunit Tim44 [Burkholderia
           cenocepacia AU 1054]
 gi|116648840|gb|ABK09481.1| import inner membrane translocase, subunit Tim44 [Burkholderia
           cenocepacia HI2424]
          Length = 343

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 71/238 (29%), Gaps = 32/238 (13%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQL----------RGVLGKKTGNEKPFSGFFSGKYVFS 52
           F  M +   +I L A +  ++  +             V G  +      SG +S    F 
Sbjct: 124 FASMMANVIVIALLAMVGIWLIRKFMNRRRPQEPAYSVGGAASS-----SGGYSQSPSFQ 178

Query: 53  KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
           + +             +    +                 + V   FD + FL  A+  + 
Sbjct: 179 QGNTGSNYAGSGSSYANEAQGVFGGGAAAAGAAAAAAAPLQVPAGFDTEAFLRSAKVYFV 238

Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
            +  ++ +G +  I +     ++ +    L +R       ++ +V + D +++       
Sbjct: 239 RLQAAWDQGNLADIREFTTPEMFAEIKIDLDSR--GNDANQTDVVQL-DAELVAIEDRGI 295

Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
               ++R              L+  +         ++W   +     +  W+L   + 
Sbjct: 296 EQSASVRF-----------HGLIREAANTSAAPFDEVWNLSK---SGSQGWLLAGIQQ 339


>gi|195395288|ref|XP_002056268.1| GJ10851 [Drosophila virilis]
 gi|194142977|gb|EDW59380.1| GJ10851 [Drosophila virilis]
          Length = 362

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 77/209 (36%), Gaps = 21/209 (10%)

Query: 28  RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83
           RGVL  +   E+PF    +G     YV  + D +  I    G K+       E     ++
Sbjct: 88  RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISSSGTKQKL-----EFLEKKSK 142

Query: 84  LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
               +R I +   +F   DF  +A+  Y A        + + I + V  R Y +   ++ 
Sbjct: 143 SLMAVRKIRAYEENFSSDDFGVQAQEIYIAAHTHMAAKEKYKIREFVSERCYPEMMHNVK 202

Query: 144 TRKSNEKNVKSSLV------GIDDMKIINASIEEN-TVYITIRIVGQFISASYDKDNLLI 196
                 K +    +       +   ++     +EN    +T+R   Q + A YD+   L+
Sbjct: 203 D-----KTIHWRFLQSLEPPRVVHARVTEVITKENLFAQVTVRFHTQQMLAIYDRFGRLM 257

Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
                +   V++   F ++I      W L
Sbjct: 258 HGSEIVTKDVLEYVVFEKHISNEYGKWRL 286


>gi|51473623|ref|YP_067380.1| hypothetical protein RT0421 [Rickettsia typhi str. Wilmington]
 gi|51459935|gb|AAU03898.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington]
          Length = 212

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 58/144 (40%), Gaps = 20/144 (13%)

Query: 86  KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145
             M  I      FDP  F+N A+ +++ I+++ ++  +  + +L+D R  ++F   ++  
Sbjct: 87  DGMEQIHKRLYSFDPVKFINNAKTAFQMIIEAAYKKDIKELTELIDKRYLEEFEK-ITP- 144

Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
            S      SS +     K     +  N ++I +   G+           ++         
Sbjct: 145 -SYGDFFDSSAL---SAKYSEIYMFGNNIFIKLLFQGK----------NVVD----KIEN 186

Query: 206 VIDIWTFVRNIPPSNPNWVLISTK 229
           + + WTF RN      +W L + +
Sbjct: 187 LQEEWTFTRNANTKEVDWFLSNIE 210


>gi|121603693|ref|YP_981022.1| import inner membrane translocase subunit Tim44 [Polaromonas
           naphthalenivorans CJ2]
 gi|120592662|gb|ABM36101.1| import inner membrane translocase, subunit Tim44 [Polaromonas
           naphthalenivorans CJ2]
          Length = 330

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/246 (9%), Positives = 76/246 (30%), Gaps = 42/246 (17%)

Query: 12  LILLFAFIT----FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
            I++FA +       +   +R + G+  G   P +      + F         ++ +   
Sbjct: 98  QIIMFALLALVVMVVIGFVMRKLKGR--GASAPGATRSQPPFAFQGAGNAAEASIPRSYS 155

Query: 68  KDNLDSINELFP-------------------IGTRLNKVMRDIVS--VYTDFDPKDFLNE 106
             N+ +     P                    G+ +   +    S  V   FD   FL  
Sbjct: 156 PSNVGNDASARPWERNTTLFDNMGTAAAPAAGGSMIGSGLSGSQSWGVPAGFDADGFLKA 215

Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN--EKNVKSSLVGIDDMKI 164
            + ++  + D++    +  +  ++   + +     L+ R+++    + K+ +V ++  ++
Sbjct: 216 CKANFVTLQDAWDRSDIQNLRSMMTDDMLEQIKTQLADRETHTGGVSNKTEVVMLN-AQL 274

Query: 165 INASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
           +      +    ++               ++            ++W   +        W+
Sbjct: 275 LGIEEMSDVYMASVEFS-----------GMIKEDASSGASPFREVWNMTKP-RSGGSGWL 322

Query: 225 LISTKL 230
           +   + 
Sbjct: 323 VAGVQA 328


>gi|170042852|ref|XP_001849125.1| 39S ribosomal protein L45 [Culex quinquefasciatus]
 gi|167866282|gb|EDS29665.1| 39S ribosomal protein L45 [Culex quinquefasciatus]
          Length = 336

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 80/209 (38%), Gaps = 21/209 (10%)

Query: 28  RGVLGKKTGNEKPF----SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83
           RG+L  +   E+PF    +G     Y+  + D +      +G K+       E     T+
Sbjct: 83  RGLLPPRPWLERPFHISCTGGVFEPYIPPEGDGKMSAVSKEGAKQK-----FEQLEKKTK 137

Query: 84  LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
               +R I S   DF+P +F   A++ Y    ++      + + ++V  R Y +   ++S
Sbjct: 138 SMMAIRKIRSYDDDFEPPEFAGYAQDIYIDTHNTLAAKNKYKLREIVTERAYPELIHNVS 197

Query: 144 TRKSNEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLI 196
                 K +    +       +   +  +   ++N    +T+R   Q I A YD+   L+
Sbjct: 198 D-----KTIHWKFLKSLEPPRVVHARCTDVISKDNIFAQVTVRFHSQQILAIYDRFGRLM 252

Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
                I    ++   F +++      W L
Sbjct: 253 HGSETIAKDCLEYVVFEKHVSNEYGVWRL 281


>gi|86750877|ref|YP_487373.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris HaA2]
 gi|86573905|gb|ABD08462.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris HaA2]
          Length = 338

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 7/126 (5%)

Query: 109 NSYEA----IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164
            ++E     I  ++       + +L    +   F   L+  K+     K S V +    +
Sbjct: 214 EAFEQLLGDIQSAWTNEDTEKLNQLTTPEMASYFAKDLAENKAANDINKVSDVKLLQGDL 273

Query: 165 INASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
             A  E  T Y T+ +    +  + ++    + +  E   +V ++WTF R       +W 
Sbjct: 274 AEAWREGETDYATVAMRFSLVDKTLERGTDRLVAGSETPIEVTEVWTFARRPGA---HWE 330

Query: 225 LISTKL 230
           L + + 
Sbjct: 331 LSAIQQ 336


>gi|253997457|ref|YP_003049521.1| import inner membrane translocase subunit Tim44 [Methylotenera
           mobilis JLW8]
 gi|253984136|gb|ACT48994.1| import inner membrane translocase subunit Tim44 [Methylotenera
           mobilis JLW8]
          Length = 270

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 51/134 (38%), Gaps = 15/134 (11%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
           DF    FL  A+ S+  +  +     ++ + +     V+ + +  +  R     +V+++ 
Sbjct: 150 DFPVDSFLRNAKASFIRLQAANDRKDINDVREYTTPEVFAEISMQMQER---GSSVQTTE 206

Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
           V   + +++  + E+     ++R  GQ      + +             + ++W   ++ 
Sbjct: 207 VVAINAELLEVANEDAYTIASVRFTGQL----RENNG--------ALESIDEVWHIQKDT 254

Query: 217 PPSNPNWVLISTKL 230
             +   W+L   + 
Sbjct: 255 TNTQEKWLLAGIQQ 268


>gi|237747318|ref|ZP_04577798.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229378669|gb|EEO28760.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 305

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 66/223 (29%), Gaps = 26/223 (11%)

Query: 9   GDFLILLFAFITFFVF-LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
           G    +L   I  +V    LR          +        +   +               
Sbjct: 106 GMISTILMLVIIVYVVRFLLR----------RFSKRRQMEQDPTAYASNYRNTGYQHSST 155

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
            +    +   F         + D   +  DFD   FL  A++ +  +  ++ +G ++ I 
Sbjct: 156 PEIGSGLPHQFQGNQSGAGAVSDTWGIPADFDVPAFLRAAKSYFIRMQAAWDKGDINDIH 215

Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
           +     ++ +    L  R     +   + V   D +++      +    +++  G+    
Sbjct: 216 EFTTPEMFAEIRLQLQER---GDSPNVTDVVSLDAELLGIETLNDEYMASVKFSGKI--- 269

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             + ++              ++W   R I   +  WVL   + 
Sbjct: 270 -REAESAPAE-------PFEEVWNLTRPISKKD-GWVLAGIQQ 303


>gi|66048290|ref|YP_238131.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
           syringae pv. syringae B728a]
 gi|63258997|gb|AAY40093.1| Mitochondrial import inner membrane translocase, subunit Tim44
           [Pseudomonas syringae pv. syringae B728a]
          Length = 281

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 67/221 (30%), Gaps = 36/221 (16%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F IL+   I  F+  +                     +    K    G     +   + 
Sbjct: 95  LFDILIMGLIA-FLIFR---------------FIARRRQQQQPKMAAAGAPPYQRETSQP 138

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
             + I       +        +++    F+ + FL+ AR  ++++ + +   ++  I + 
Sbjct: 139 AQNPIFGSSSPASA-----APVINAPAWFNEQRFLDAARGHFQSLQEHWDANEMDKIAEF 193

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V  ++ Q        R       +S+ +    +++       +    T+   G   ++ +
Sbjct: 194 VTPQMLQFLK---KERADLGDGFQSTFIENLQVQLDGVDDRADKTIATLTFSGVSKTSRF 250

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D    + S            W   R    + P W++   + 
Sbjct: 251 D-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 279


>gi|66550524|ref|XP_625034.1| PREDICTED: probable 39S ribosomal protein L45, mitochondrial [Apis
           mellifera]
          Length = 332

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 77/210 (36%), Gaps = 23/210 (10%)

Query: 28  RGVLGKKTGNEKPF-----SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82
            G++ ++T NE+P       G F    V     +   IT    K+K       E     +
Sbjct: 80  YGIMPQRTWNERPIYISSTPGIFESYIVPEGDGKFSPITTTGAKQK------IEFINKKS 133

Query: 83  RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
           +    +R I     ++  K FL +  + Y+   ++    K   I K V    Y     ++
Sbjct: 134 KSFIALRKIKGYEENYTTKTFLEQTLDIYKKAHEALCTQKKDEILKYVTETAYPIMIHNI 193

Query: 143 STRKSNEKNVKSSLV-GIDDMKIINASI-----EENT-VYITIRIVGQFISASYDKDNLL 195
                  K +    +  ++  ++++A +     + N    +TIR   Q I   YD+   +
Sbjct: 194 K-----NKTIIWKFMESLEPARLVHARVTSIVTQGNEFAQVTIRFHTQQILCIYDRFGRV 248

Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
           +     +   V+D   F +++      W +
Sbjct: 249 LLGSETVKKDVLDYIVFEKHLSNEYGIWRI 278


>gi|294340780|emb|CAZ89175.1| conserved hypothetical protein; putative membrane protein
           [Thiomonas sp. 3As]
          Length = 304

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 62/219 (28%), Gaps = 37/219 (16%)

Query: 15  LFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSI 74
           L A   F++F  LR          +  S   S + +      +G      G +       
Sbjct: 118 LLALAAFWIFNLLR----------RKSSTDKSAQPMQYAGASQGYAQAPLGVETHMPAQW 167

Query: 75  NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134
                  T     +        DFD   FL  A+  Y  +  ++    +++++    + +
Sbjct: 168 TPGAGSQTASGAGIPA------DFDRDGFLASAKQHYIRLQQAWDAADLNSLKTFATAEM 221

Query: 135 YQDFNDSLSTRKSNEKNV-KSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
           Y      L  R        K+ +V + +  ++           ++               
Sbjct: 222 YDALAADLQQR---GMTPNKTEIVTL-EASLLALEETPTEYVASVEFS-----------G 266

Query: 194 LLISSDPEIFGKVIDIWTFV--RNIPPSNPNWVLISTKL 230
           L+          V ++W  V  R+       W L   + 
Sbjct: 267 LVREETWGGASPVREVWNLVKPRDGSSG---WQLAGIQQ 302


>gi|85715641|ref|ZP_01046621.1| hypothetical protein NB311A_18371 [Nitrobacter sp. Nb-311A]
 gi|85697580|gb|EAQ35457.1| hypothetical protein NB311A_18371 [Nitrobacter sp. Nb-311A]
          Length = 330

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 9/127 (7%)

Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164
            ++E     I  ++    V+ +  L    +   F + L    +     K S V +    +
Sbjct: 207 EAFERLLGEIQTAWSNEDVNTLHALATPEMVSYFTEDLQANDARGVVNKVSDVKLLQGDL 266

Query: 165 INASIEENTVYITIRIVGQFISASYDKDN-LLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223
             A  E  T Y T+ +    I  + ++    ++    +   +  D+WTF R        W
Sbjct: 267 AEAWREGMTDYATVALRYSLIDKTIERAGGRIVEGS-DQPQEATDVWTFARRGGGK---W 322

Query: 224 VLISTKL 230
            L + + 
Sbjct: 323 ELSAIQQ 329


>gi|299067983|emb|CBJ39197.1| conserved membrane protein of unknown function [Ralstonia
           solanacearum CMR15]
          Length = 345

 Score = 61.0 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 72/251 (28%), Gaps = 51/251 (20%)

Query: 8   SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFS--GKYVFSKRDERGIITLGKG 65
           S   LI + AF+  ++  +LRG         +P    ++  G  +   R+          
Sbjct: 116 SNLILIAIIAFVVMWIIRKLRGS--------RPQEPAYATGGPSLSGDREPYVPSPAAPA 167

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYT--------------------------DFD 99
            +     + +      + L    +     ++                          DFD
Sbjct: 168 AQPAAPVAASAGTGNASGLGSGAQTAAQAWSLGGPAAPAANAPAAAPAAQQPWGVPADFD 227

Query: 100 PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159
            + FL  A+  +  +  ++  G ++ I +     ++ +    L+ R         + V  
Sbjct: 228 TQAFLRNAKVYFVRLQAAWDAGNLNDIREFTTPEMFAEIKMDLTDR---GTVPNKTDVVS 284

Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
            + +++           ++R              ++            ++W   +    S
Sbjct: 285 VEAELLGIETHPTEYLASVRFS-----------GMIREEASAPAQPFAEVWNLTKPTQGS 333

Query: 220 NPNWVLISTKL 230
              WVL   + 
Sbjct: 334 G-GWVLAGIQQ 343


>gi|296157950|ref|ZP_06840783.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
           Ch1-1]
 gi|295891718|gb|EFG71503.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
           Ch1-1]
          Length = 320

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 69/225 (30%), Gaps = 27/225 (12%)

Query: 7   DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
           ++    +++ A +  F F+             +       G    +++   G   L + +
Sbjct: 119 NALLIGLVVVAGVMLFRFI-----------ANRRRPDLAYGHGSANRQQTNGSPFLNQVR 167

Query: 67  KKDNLDSINELFPIGTRLNKVMRDIVSVYTDF-DPKDFLNEARNSYEAIVDSFFEGKVHA 125
           +     ++ +              + +      D   FL  A+  +  +  ++   +   
Sbjct: 168 EARPDTNLRDWPRAAMGTTGAAGSVKAPEPALADQAAFLVSAKAMFMRLQGAWDRNEQGD 227

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           + +L    ++      L  R         + V   D +++      +   +++R  GQ  
Sbjct: 228 LFELTTPEMFMRLKQDLEHR---GHEPSRTDVTQLDAEVLGTESNADETLVSVRFYGQMR 284

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                        D +I     +IW  VR++   +  W L   + 
Sbjct: 285 -----------EDDAQIAQPFQEIWNMVRSVH-GDEGWRLAGIQQ 317


>gi|192292770|ref|YP_001993375.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
           palustris TIE-1]
 gi|192286519|gb|ACF02900.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
           palustris TIE-1]
          Length = 337

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 11/192 (5%)

Query: 43  GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKD 102
           G++  +         G    G+G +  N    +       R         S      P +
Sbjct: 151 GWWQRRNNPQPAYAAGQ-APGQGPQPMNQGPQSPGPQAAYRTGFGFGGGASNDR---PLE 206

Query: 103 FLNEARNSYEA----IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG 158
              E   ++E     I  ++    +  + +L    +   F   L   K+     K S V 
Sbjct: 207 IKPEDYEAFERLLGDIQAAWSNEDIDRLRQLATPEMASYFAKDLEENKAANDINKVSDVK 266

Query: 159 IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP 218
           +    +  A  E  + Y T+ +    +  + ++    + +  E   +V +IWTF R    
Sbjct: 267 LLQGDLAEAWREGESDYATVAMRFSLVDKTLERGTNRLVAGSETPIEVTEIWTFTRRPGA 326

Query: 219 SNPNWVLISTKL 230
           S   W L + + 
Sbjct: 327 S---WELAAIQQ 335


>gi|332029058|gb|EGI69072.1| Putative 39S ribosomal protein L45, mitochondrial [Acromyrmex
           echinatior]
          Length = 337

 Score = 60.7 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 68/200 (34%), Gaps = 23/200 (11%)

Query: 38  EKPFS-----GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIV 92
           E+P         F          +  +IT    K+K         F   ++    +R I 
Sbjct: 95  ERPAFISSTSSIFESYVAPEGDGKYSVITKEGAKQKFTF------FEKKSKSFMAIRKIK 148

Query: 93  SVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNV 152
           S    F    FL EA + Y+   ++        I K V    Y      ++   +  K +
Sbjct: 149 SFDDSFKTSFFLEEALDIYQKAYEALASKNEEEIIKYVTEMAY----PKITH-NTMNKTI 203

Query: 153 KSSLV-GIDDMKIINASI------EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
               +  ++  ++++A        E     +T+R   Q + A YD+   LI     +   
Sbjct: 204 HWKFLESLEPARLVHARTTDVITKENVFAQLTVRFHTQQVLAIYDRFGHLIQGSEILRKD 263

Query: 206 VIDIWTFVRNIPPSNPNWVL 225
           V++   F +++      W +
Sbjct: 264 VLEYIVFEKHLANEYGIWRI 283


>gi|296136650|ref|YP_003643892.1| import inner membrane translocase subunit Tim44 [Thiomonas
           intermedia K12]
 gi|295796772|gb|ADG31562.1| import inner membrane translocase subunit Tim44 [Thiomonas
           intermedia K12]
          Length = 304

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 62/219 (28%), Gaps = 37/219 (16%)

Query: 15  LFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSI 74
           L A   F++F  LR          +  S   S + +      +G      G +       
Sbjct: 118 LLALAAFWIFNLLR----------RKSSTDKSAQPMQYAGASQGYAQAPLGAETHVPAQW 167

Query: 75  NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134
                  T     +        DFD   FL  A+  Y  +  ++    +++++    + +
Sbjct: 168 TPGAGSQTASGASIPA------DFDRDGFLASAKQHYIRLQQAWDAADLNSLKTFTTAEM 221

Query: 135 YQDFNDSLSTRKSNEKNV-KSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
           Y      L  R        K+ +V + +  ++           ++               
Sbjct: 222 YDALAADLQQR---GMTPNKTEIVTL-EASLLALEETPTEYVASVEFS-----------G 266

Query: 194 LLISSDPEIFGKVIDIWTFV--RNIPPSNPNWVLISTKL 230
           L+          V ++W  V  R+       W L   + 
Sbjct: 267 LVREETWGGASPVREVWNLVKPRDGSSG---WQLAGIQQ 302


>gi|39936942|ref|NP_949218.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
           palustris CGA009]
 gi|39650799|emb|CAE29322.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
          Length = 337

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 11/192 (5%)

Query: 43  GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKD 102
           G++  +         G    G+G +  N    +       R         S      P +
Sbjct: 151 GWWQRRNNPQPAYAAGQ-APGQGPQPMNQGPQSPGPQAAYRTGFGFGGGASNDR---PLE 206

Query: 103 FLNEARNSYEA----IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG 158
              E   ++E     I  ++    +  + +L    +   F   L   K+     K S V 
Sbjct: 207 IKPEDYEAFERLLGDIQAAWSNEDIDRLRQLATPEMASYFAKDLEENKAANDINKVSDVK 266

Query: 159 IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP 218
           +    +  A  E  + Y T+ +    +  + ++    + +  E   +V +IWTF R    
Sbjct: 267 LLQGDLAEAWREGESDYATVAMRFSLVDKTLERGTNRLVAGSETPIEVTEIWTFTRRPGA 326

Query: 219 SNPNWVLISTKL 230
           S   W L + + 
Sbjct: 327 S---WELAAIQQ 335


>gi|220905000|ref|YP_002480312.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869299|gb|ACL49634.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 308

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 77/224 (34%), Gaps = 31/224 (13%)

Query: 14  LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL-- 71
           ++   +  F+ L+L           +  +   S       +   G     +G ++++   
Sbjct: 111 IILIGLLAFLGLKL---------FARFRNRQASATAGAHGQHSGGYSDRMQGMQRESAGG 161

Query: 72  DSINELFPIGTRLNKVMRD---IVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
           +  + L   G      M     I      FD  +FL  A+ +Y  + +S+ +  +  I +
Sbjct: 162 NGWDVLRGDGQGAAAHMAAGPNIPMPE-GFDVDEFLRGAKMAYTRLQNSWDKRDMDDISQ 220

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
              S V      ++  +   + +  S+ + + + +++    E N  Y  +        + 
Sbjct: 221 FTSSAV----QHAVREQMEADPSPSSTEILLVNAQLLGVENEGNEQYAQVFFDVLMRESP 276

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
                     D +    V ++W F+R +     +W L   +  E
Sbjct: 277 ----------DQQAPSTVREVWHFMRPVQGG--SWKLDGIQQVE 308


>gi|262376593|ref|ZP_06069821.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
 gi|262308303|gb|EEY89438.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
          Length = 327

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 30/231 (12%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFF---------SGKYVFSKRDERGIIT 61
             ILL A + FF+F ++     KK     PF+                     D   I  
Sbjct: 115 IWILLAAAVAFFIFRKMSA---KKKVASNPFAPNSGAGNTAPFGQAPTAPRGGDSTNIFG 171

Query: 62  LGKGKKKDNLDSINELFPIG-TRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFF 119
              G +  + ++     P+             S      +P  FL  AR  +  I     
Sbjct: 172 QNVGGQTSSNNAPLGSAPVNNAPFGAAYTQSGSQLPDGTEPAAFLRVARQRFNHIQSMNT 231

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
              +  I++ +   +YQ   + + + +  +    +    ++   ++++S +     +++R
Sbjct: 232 ASNISEIQRYLTPELYQSMYNDIMSNQDQDV---AEFSNLN-AMVVDSSTDNGQYIVSVR 287

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                          +      +     +IW F +     N +WV+   + 
Sbjct: 288 F-----------TGTVSEDLNSLPQPFAEIWHFTKPAGS-NQDWVVAGIQQ 326


>gi|226952069|ref|ZP_03822533.1| membrane protein [Acinetobacter sp. ATCC 27244]
 gi|294651122|ref|ZP_06728458.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|226837187|gb|EEH69570.1| membrane protein [Acinetobacter sp. ATCC 27244]
 gi|292823016|gb|EFF81883.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 338

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 52/195 (26%), Gaps = 16/195 (8%)

Query: 37  NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT 96
           N   FS   S        D   I     G                   +  M     +  
Sbjct: 160 NSNQFSRQSSQPTARQTGDNTNIFGQAVGGGAATQSPFGNAPTQAPFGSATMSSGNQLPD 219

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
             +P  FL  AR  +  I        +  I + +   +Y      +   +  +    +  
Sbjct: 220 GTEPAAFLRVARQRFNHIQSMNTASNIQEIRRYLTPDLYASMYQDIMANQDQDV---AEF 276

Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
             ++   I   + E     +++R               +      +     +IW FV+++
Sbjct: 277 SNLN-AMIAETATENGQYVVSVRF-----------TGTVSEDLNSLPQPFTEIWHFVKDV 324

Query: 217 PPSNPNWVLISTKLG 231
                +WV+   +  
Sbjct: 325 GSQQ-DWVVAGIQQA 338


>gi|33603441|ref|NP_891001.1| hypothetical protein BB4467 [Bordetella bronchiseptica RB50]
 gi|33577565|emb|CAE34830.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 340

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 67/230 (29%), Gaps = 34/230 (14%)

Query: 10  DFLILLFAFITFFVFLQLR---------GVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60
              +++FA I  F+  +LR            G   GN +P        +  S        
Sbjct: 129 LIALVVFAVI--FIVRRLRGGAPRQAMQSAYGAAGGN-RPGQPSQQPMWRESLNPAPAQQ 185

Query: 61  TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
                       +     P              +  DFD   FL +A++ +  I   +  
Sbjct: 186 PAAAPVAAAAPAAAAAALPKAGDDGNWF-----IPGDFDTPRFLQQAKDQFVRIQGIWDS 240

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
           G+V ++   +   +  +    L  R +     +  L+     +++      +    ++R 
Sbjct: 241 GEVESLRDFLTDDLISELKPQLEARGAAANKTEVVLLN---AELLGIETVSDGHLASVRF 297

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            G               +      +  ++W       P++  W+L   + 
Sbjct: 298 SGMLR-----------EAPGTEAFRFEEVWNL---FKPADGGWLLAGIQQ 333


>gi|148256773|ref|YP_001241358.1| hypothetical protein BBta_5490 [Bradyrhizobium sp. BTAi1]
 gi|146408946|gb|ABQ37452.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 325

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 13/129 (10%)

Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164
            ++E     I  ++    V  +  L    +   F   L   ++     K S V +    +
Sbjct: 201 EAFERLLGEIQQAWSNEDVGRLRLLSTPEMASYFERDLEQNQARGVVNKVSGVKLLQGDL 260

Query: 165 INASIEENTVYITI--RI-VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP 221
             A  E    Y T+  R  +      +      ++    +   +V +IWTF+R+      
Sbjct: 261 AEAWRENGADYATVAMRFTLADKT--TERASGRVVEGS-DQPQEVTEIWTFLRHPGAD-- 315

Query: 222 NWVLISTKL 230
            W L + + 
Sbjct: 316 -WQLSAIQQ 323


>gi|53724992|ref|YP_102025.1| hypothetical protein BMA0187 [Burkholderia mallei ATCC 23344]
 gi|121599413|ref|YP_994055.1| hypothetical protein BMASAVP1_A2759 [Burkholderia mallei SAVP1]
 gi|124384532|ref|YP_001028281.1| hypothetical protein BMA10229_A2319 [Burkholderia mallei NCTC
           10229]
 gi|126450327|ref|YP_001081925.1| hypothetical protein BMA10247_2399 [Burkholderia mallei NCTC 10247]
 gi|238561937|ref|ZP_00441249.2| Tim44 domain protein [Burkholderia mallei GB8 horse 4]
 gi|251767560|ref|ZP_02267708.2| Tim44 domain protein [Burkholderia mallei PRL-20]
 gi|52428415|gb|AAU49008.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344]
 gi|121228223|gb|ABM50741.1| conserved hypothetical protein [Burkholderia mallei SAVP1]
 gi|124292552|gb|ABN01821.1| conserved hypothetical protein [Burkholderia mallei NCTC 10229]
 gi|126243197|gb|ABO06290.1| conserved hypothetical protein [Burkholderia mallei NCTC 10247]
 gi|238523657|gb|EEP87094.1| Tim44 domain protein [Burkholderia mallei GB8 horse 4]
 gi|243062328|gb|EES44514.1| Tim44 domain protein [Burkholderia mallei PRL-20]
          Length = 323

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57
           F  M +   +I L A    ++  +       + G ++P           G   +S+    
Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 160

Query: 58  GIITLGKGKKKDNLDSINELFPI---GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
                  G    +  +          G           +V   FD + FL  A+  +  +
Sbjct: 161 QRPAAPGGAFPGSGSAYAGEAQRVFGGAAAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 220

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
             ++ EG +  I +     ++ +    L  R +     ++ +V + D +++         
Sbjct: 221 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 277

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
             ++R  G       +                 ++W   +     +  W+L   +  
Sbjct: 278 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 320


>gi|291615430|ref|YP_003525587.1| import inner membrane translocase subunit Tim44 [Sideroxydans
           lithotrophicus ES-1]
 gi|291585542|gb|ADE13200.1| import inner membrane translocase subunit Tim44 [Sideroxydans
           lithotrophicus ES-1]
          Length = 275

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/183 (11%), Positives = 57/183 (31%), Gaps = 24/183 (13%)

Query: 48  KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107
           +       +        G  ++   +     P+             + TDF  + FL  A
Sbjct: 116 RRKQEPAMQYAGAAAPYGGTQEPAQAYGGYAPVAAAG---------IPTDFPVESFLRSA 166

Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167
           + S+  +  +     +  I +     ++ + +  +  R       + + V + +  ++  
Sbjct: 167 KTSFIRLQAANDRKDLDDIREYTTPEMFAEVSMQIRER---GDAPQKTDVDVVNADLLEV 223

Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
             E +    ++R+ GQ      + +               +IW   +N+      W+L  
Sbjct: 224 VTENDYAIASVRMSGQL----RENNG--------TPESFDEIWHVQKNLKDDKSVWLLAG 271

Query: 228 TKL 230
            + 
Sbjct: 272 IQQ 274


>gi|53718281|ref|YP_107267.1| hypothetical protein BPSL0638 [Burkholderia pseudomallei K96243]
 gi|52208695|emb|CAH34631.1| putative membrane protein [Burkholderia pseudomallei K96243]
          Length = 323

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57
           F  M +   +I L A    ++  +       + G ++P           G   +S+    
Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 160

Query: 58  GIITLGKGKKKDNLDSINELFPI---GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
                  G    +  +          G           +V   FD + FL  A+  +  +
Sbjct: 161 QRPAAPGGAFPGSGSAYAGEAQRVFGGAAAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 220

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
             ++ EG +  I +     ++ +    L  R +     ++ +V + D +++         
Sbjct: 221 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 277

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
             ++R  G       +                 ++W   +     +  W+L   +  
Sbjct: 278 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 320


>gi|121608297|ref|YP_996104.1| import inner membrane translocase subunit Tim44 [Verminephrobacter
           eiseniae EF01-2]
 gi|121552937|gb|ABM57086.1| import inner membrane translocase, subunit Tim44 [Verminephrobacter
           eiseniae EF01-2]
          Length = 321

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 71/230 (30%), Gaps = 28/230 (12%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII--TLGKGKKKDN 70
           I L A + + V+   R VL  + G          G    S +  +  +  +        +
Sbjct: 106 IALLAMLAYAVY---RMVLRARQGGAGGSGLALQGAGASSPQAAQAPVQYSPHNVGNDAS 162

Query: 71  LDSINELFPIGTRLNKVM--------RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
                     G +    +             V   FD   FL  A+ ++  +  ++    
Sbjct: 163 ARPWEGSGMAGRQPAAGVVIGSGLAGAQNWGVPEGFDTDGFLAAAKRNFVTLQAAWDRSD 222

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNE--KNVKSSLVGIDDMKIINASIEENTVYITIRI 180
           +  +  ++   +  +    L+ R++    ++ ++  V I + +++    + +    ++  
Sbjct: 223 ISTLRSMMTDDMLGEIRAQLAEREAQHGAQSQQTEAVMI-EARLLGIEDQADCYMASVEF 281

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                        ++            ++W   ++    +  W++   + 
Sbjct: 282 S-----------GMIREEPSAGASPFREVWNMTKS-KAGSTGWLVAGVQA 319


>gi|254689480|ref|ZP_05152734.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 6 str. 870]
 gi|256257728|ref|ZP_05463264.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 9 str. C68]
          Length = 134

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 4/120 (3%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I   +      A+ KL          + L    S  K  +   V +    +  A  E N 
Sbjct: 18  IQGGYGREDYAALRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNV 77

Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            Y T+ +    I    D+    ++  +P    + +++WTF R    +   W L + +  E
Sbjct: 78  EYATVAMRYSAIDVMVDRTSGAVVEGNPNEPVESVELWTFTRTDGGA---WQLAAIQGTE 134


>gi|254203707|ref|ZP_04910067.1| Tim44 domain protein [Burkholderia mallei FMH]
 gi|147745219|gb|EDK52299.1| Tim44 domain protein [Burkholderia mallei FMH]
          Length = 343

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57
           F  M +   +I L A    ++  +       + G ++P           G   +S+    
Sbjct: 125 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 180

Query: 58  GIITLGKGKKKDNLDSINELFPI---GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
                  G    +  +          G           +V   FD + FL  A+  +  +
Sbjct: 181 QRPAAPGGAFPGSGSAYAGEAQRVFGGAAAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 240

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
             ++ EG +  I +     ++ +    L  R +     ++ +V + D +++         
Sbjct: 241 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 297

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
             ++R  G       +                 ++W   +     +  W+L   +  
Sbjct: 298 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 340


>gi|144897341|emb|CAM74205.1| Mitochondrial import inner membrane translocase, subunit Tim44
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 327

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 10/123 (8%)

Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA---- 167
           E +  ++ +G   A+ +LV   V     + L+  ++N        V +    I       
Sbjct: 210 EGVQKAWSDGNPVALRQLVTPEVAGWIGEDLARDQANGVRNVVEDVTLLKGDISETWSEN 269

Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
            ++  T  IT     +        DN ++  DP    +  + WTFVR        WVL +
Sbjct: 270 GMDYATAIIT--FSARD-YMVRLSDNEVVEGDPRNAVETTEAWTFVRGAGG---TWVLSA 323

Query: 228 TKL 230
            + 
Sbjct: 324 IEQ 326


>gi|254176738|ref|ZP_04883395.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399]
 gi|254208682|ref|ZP_04915030.1| Tim44 domain protein [Burkholderia mallei JHU]
 gi|254360262|ref|ZP_04976532.1| Tim44 domain protein [Burkholderia mallei 2002721280]
 gi|147750558|gb|EDK57627.1| Tim44 domain protein [Burkholderia mallei JHU]
 gi|148029502|gb|EDK87407.1| Tim44 domain protein [Burkholderia mallei 2002721280]
 gi|160697779|gb|EDP87749.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399]
          Length = 339

 Score = 60.7 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57
           F  M +   +I L A    ++  +       + G ++P           G   +S+    
Sbjct: 121 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 176

Query: 58  GIITLGKGKKKDNLDSINELFPI---GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
                  G    +  +          G           +V   FD + FL  A+  +  +
Sbjct: 177 QRPAAPGGAFPGSGSAYAGEAQRVFGGAAAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 236

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
             ++ EG +  I +     ++ +    L  R +     ++ +V + D +++         
Sbjct: 237 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 293

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
             ++R  G       +                 ++W   +     +  W+L   +  
Sbjct: 294 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 336


>gi|17987012|ref|NP_539646.1| transporter [Brucella melitensis bv. 1 str. 16M]
 gi|17982665|gb|AAL51910.1| transporter [Brucella melitensis bv. 1 str. 16M]
          Length = 197

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 4/120 (3%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I   +      A+ KL          + L    S  K  +   V +    +  A  E N 
Sbjct: 81  IQGGYGREDYAALRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNV 140

Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            Y T+ +    I    D+    ++  +P    + +++WTF R    +   W L + +  E
Sbjct: 141 EYATVAMRYSAIDVMVDRTSGAVVEGNPNEPVESVELWTFTRTDGGA---WQLAAIQGTE 197


>gi|302880097|ref|YP_003848661.1| import inner membrane translocase subunit Tim44 [Gallionella
           capsiferriformans ES-2]
 gi|302582886|gb|ADL56897.1| import inner membrane translocase subunit Tim44 [Gallionella
           capsiferriformans ES-2]
          Length = 281

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 53/134 (39%), Gaps = 15/134 (11%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
           DF  + FL  A+ S+  +  +     ++ I +     ++ + +  +  R +  +   +++
Sbjct: 159 DFPVESFLRSAKTSFIRLQAANDRKDLNDIREYTTPEMFAEISMQMHERDNTPQT--TNV 216

Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
           + I+  +++  + E +    ++R  GQ             S +      V +IW   +N+
Sbjct: 217 IAIN-GELLEVANEGDWAIASVRFTGQL------------SENNGTAENVDEIWHVQKNL 263

Query: 217 PPSNPNWVLISTKL 230
                 W+L   + 
Sbjct: 264 KDDKAVWLLSGIQQ 277


>gi|169632671|ref|YP_001706407.1| hypothetical protein ABSDF0845 [Acinetobacter baumannii SDF]
 gi|169151463|emb|CAP00212.1| conserved hypothetical protein; putative exported protein
           [Acinetobacter baumannii]
          Length = 326

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 71/226 (31%), Gaps = 34/226 (15%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFS--GFFSGKYVFSKRDERGIITLGKGKKKDN 70
           +LL A +TFFVF        +K G++K  +    ++          R       G   + 
Sbjct: 128 VLLAAAVTFFVF--------RKLGSKKKLAANNPYAPNNGGQNPFGRSAAPTNTGDNTNI 179

Query: 71  LDS-----INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
                        P G+        +       +P  FL  AR  +  I        +  
Sbjct: 180 FGQSVGGGAATQAPFGSATTNSGNQLPD---GSEPASFLRVARQRFNHIQSINSASNIEE 236

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           I + +   +Y    + +   +  +    +    ++ M + +A+ E     +++R      
Sbjct: 237 IRRYLTPELYNSMYNDIMENQDQDV---AEFSNLNAMVVDSAT-ENGQYIVSVRF----- 287

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
                    +      +     +IW FV+ +     +WV+   +  
Sbjct: 288 ------TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 326


>gi|260884014|ref|ZP_05895628.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 9 str. C68]
 gi|260873542|gb|EEX80611.1| import inner membrane translocase subunit Tim44 [Brucella abortus
           bv. 9 str. C68]
          Length = 139

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 4/120 (3%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I   +      A+ KL          + L    S  K  +   V +    +  A  E N 
Sbjct: 23  IQGGYGREDYAALRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNV 82

Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            Y T+ +    I    D+    ++  +P    + +++WTF R    +   W L + +  E
Sbjct: 83  EYATVAMRYSAIDVMVDRTSGAVVEGNPNEPVESVELWTFTRTDGGA---WQLAAIQGTE 139


>gi|27380918|ref|NP_772447.1| hypothetical protein bll5807 [Bradyrhizobium japonicum USDA 110]
 gi|27354084|dbj|BAC51072.1| bll5807 [Bradyrhizobium japonicum USDA 110]
          Length = 333

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 68/229 (29%), Gaps = 36/229 (15%)

Query: 8   SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
           S    +++   +  FV  +L                ++  ++             G G +
Sbjct: 133 SSILGLIIQIVLVVFVV-RL-------------AMSWWQRRHTPQAAYANADAGSGPGPQ 178

Query: 68  KDNLDSINELFPIGTR-LNKVMRDIVSVYTDFDPKDFLNEARNSYEA----IVDSFFEGK 122
                 +           N    +I  V               ++E     +  ++    
Sbjct: 179 TSYRSGLGGGLGGFGFGANNAPLEIKPVDY------------EAFERLLGDVQTAWSNED 226

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
           V  +  L    +   F   L   ++     K + V +    +  A  E  T Y T+ +  
Sbjct: 227 VAKLHTLATPEMVSYFEQDLGQNRARNVVNKVTNVKLLQGDLAEAWREGETDYATVALRF 286

Query: 183 QFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                + D++   +++   E  G+V ++WTF R        W L + + 
Sbjct: 287 ALTDKTLDRNTGAVVAGS-EQPGEVTEVWTFARRPGG---TWELSAIQQ 331


>gi|86360020|ref|YP_471910.1| hypothetical protein RHE_PB00141 [Rhizobium etli CFN 42]
 gi|86284122|gb|ABC93183.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 337

 Score = 60.3 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 6/118 (5%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           +  ++       + +L          + L    +N    + S V +    I  A  E   
Sbjct: 217 VQTAYGAEDYGTLRRLTTPEAMSYLAEELGENATNGVRNRVSDVKLLQGDIAEAWRENGQ 276

Query: 174 VYITI--RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            Y T+  R          D    ++S D     +  +IWTFVR        W L + +
Sbjct: 277 EYATLAMRYSSIDAMVERDS-GRVVSGDDRRPSESTEIWTFVRKSGAD---WKLAAIQ 330


>gi|328768615|gb|EGF78661.1| hypothetical protein BATDEDRAFT_90410 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 430

 Score = 59.9 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 42/127 (33%), Gaps = 4/127 (3%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137
             +   + +R    V   F    FL E    Y    ++++F +G    +++         
Sbjct: 265 EESEHARTIRAFKQVEPTFSVDAFLKETTQ-YTIPELMEAFLKGDADTLKEWCSEAALAK 323

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV-YITIRIVGQFISASYDKDNLLI 196
                 ++K       S L+ I  + I    +  + V  I I    Q I    ++   ++
Sbjct: 324 LTAGFESQKQQGLVSDSKLLDIRGVDIRQLKLLNDEVPIILIGFTTQEILLFRNRKGEIV 383

Query: 197 SSDPEIF 203
               ++ 
Sbjct: 384 VGSEDVI 390


>gi|323698095|ref|ZP_08110007.1| hypothetical protein DND132_0677 [Desulfovibrio sp. ND132]
 gi|323458027|gb|EGB13892.1| hypothetical protein DND132_0677 [Desulfovibrio desulfuricans
           ND132]
          Length = 282

 Score = 59.9 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/191 (10%), Positives = 45/191 (23%), Gaps = 19/191 (9%)

Query: 35  TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSV 94
           +G  +P      G     +          +              P  T            
Sbjct: 103 SGETRPDVRSDDGTAQRPEARTMDRHEAARRTWDMLGSREPGQRPEPTTPTGTPTGSSLR 162

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKS 154
              FD  +FL  A+  +     +  +     +   +   VY D   +        +  ++
Sbjct: 163 ADGFDEAEFLEGAKVLFSRFQQARDKEDYDDLRDFLSDGVYSDAVAA-------GERPRT 215

Query: 155 SLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVR 214
             V +    +     +      ++    Q               +     +   +W F R
Sbjct: 216 E-VMLVSALLTELHSDNGRTTASVHYDAQLR-----------VGEEGRPVRYRAVWEFDR 263

Query: 215 NIPPSNPNWVL 225
           +       WVL
Sbjct: 264 DDTTPGGLWVL 274


>gi|167909581|ref|ZP_02496672.1| Tim44-like domain protein [Burkholderia pseudomallei 112]
          Length = 314

 Score = 59.9 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57
           F  M +   +I L A    ++  +       + G ++P           G   +S+    
Sbjct: 96  FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 151

Query: 58  GIITLGKGKKKDNLDSINELFPI---GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
                  G    +  +          G           +V   FD + FL  A+  +  +
Sbjct: 152 QRQAAPGGAFPGSGSAYAGEAQRVFGGAAATTAAAAAPAVPAGFDTEAFLRNAKVYFVRL 211

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
             ++ EG +  I +     ++ +    L  R +     ++ +V + D +++         
Sbjct: 212 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 268

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
             ++R  G       +                 ++W   +     +  W+L   +  
Sbjct: 269 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 311


>gi|187479558|ref|YP_787583.1| membrane protein [Bordetella avium 197N]
 gi|115424145|emb|CAJ50698.1| Putative membrane protein [Bordetella avium 197N]
          Length = 328

 Score = 59.9 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 65/221 (29%), Gaps = 26/221 (11%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              +++FA +  F+  +LRG        ++P      G     +  +       +     
Sbjct: 127 LIGLVVFAVL--FIVRRLRG-----ASAQRPAMQGAYGGAGSQQAAQTQQPMWREASMPA 179

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
                        +  +     V     FD   FL +A+  +  I   +  G V  +  L
Sbjct: 180 AAPVAAAAPAALPKAGEDGNWFVPGD--FDTPRFLQQAKEQFVRIQAIWDSGNVDNLRDL 237

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           +   +  +F   L  R      V  + V + + +++      +    ++R  G       
Sbjct: 238 LTDDLIAEFKPQLEAR---GNEVNKTEVVLLNAELLGIETVSDGHLASVRFSGMLR---- 290

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                   +      +  ++W   +        W+L   + 
Sbjct: 291 -------EAPGAEAFRFEEVWNLFKPTTGG---WLLAGIQQ 321


>gi|167917595|ref|ZP_02504686.1| Tim44-like domain protein [Burkholderia pseudomallei BCC215]
          Length = 267

 Score = 59.9 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57
           F  M +   +I L A    ++  +       + G ++P           G   +S+    
Sbjct: 49  FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 104

Query: 58  GIITLGKGKKKDNLDSINELFPI---GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
                  G    +  +          G           +V   FD + FL  A+  +  +
Sbjct: 105 QRQAAPGGAFPGSGSAYAGEAQRVFGGAAATTAAAAAPAVPAGFDTEAFLRNAKVYFVRL 164

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
             ++ EG +  I +     ++ +    L  R +     ++ +V + D +++         
Sbjct: 165 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 221

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
             ++R  G       +                 ++W   +     +  W+L   +  
Sbjct: 222 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 264


>gi|126440320|ref|YP_001057720.1| Tim44-like domain-containing protein [Burkholderia pseudomallei
           668]
 gi|126219813|gb|ABN83319.1| Tim44-like domain protein [Burkholderia pseudomallei 668]
          Length = 324

 Score = 59.9 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 67/238 (28%), Gaps = 30/238 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSG---------KYVFSK 53
           F  M +   +I L A    ++  +       + G ++P                      
Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGI 160

Query: 54  RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
           + +        G           +F              +V   FD + FL  A+  +  
Sbjct: 161 QRQAAPGGAFPGSGSAYAGEAQRVFGGAAAATAAAATAPAVPAGFDTEAFLRNAKVYFVR 220

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           +  ++ EG +  I +     ++ +    L  R +     ++ +V + D +++        
Sbjct: 221 LQAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGE 277

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
              ++R  G       +                 ++W   +     +  W+L   +  
Sbjct: 278 HLASVRFHG----LIREAQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 321


>gi|237810871|ref|YP_002895322.1| Tim44 domain protein [Burkholderia pseudomallei MSHR346]
 gi|237504479|gb|ACQ96797.1| Tim44 domain protein [Burkholderia pseudomallei MSHR346]
          Length = 323

 Score = 59.9 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57
           F  M +   +I L A    ++  +       + G ++P           G   +S+    
Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 160

Query: 58  GIITLGKGKKKDNLDSINELFPI---GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
                  G    +  +          G           +V   FD + FL  A+  +  +
Sbjct: 161 QRQAAPGGAFPGSGSAYAGEAQRVFGGAAAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 220

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
             ++ EG +  I +     ++ +    L  R +     ++ +V + D +++         
Sbjct: 221 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 277

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
             ++R  G       +                 ++W   +     +  W+L   +  
Sbjct: 278 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 320


>gi|76811089|ref|YP_332258.1| transmembrane protein [Burkholderia pseudomallei 1710b]
 gi|254261326|ref|ZP_04952380.1| Tim44-like domain protein [Burkholderia pseudomallei 1710a]
 gi|76580542|gb|ABA50017.1| transmembrane protein [Burkholderia pseudomallei 1710b]
 gi|254220015|gb|EET09399.1| Tim44-like domain protein [Burkholderia pseudomallei 1710a]
          Length = 323

 Score = 59.9 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57
           F  M +   +I L A    ++  +       + G ++P           G   +S+    
Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 160

Query: 58  GIITLGKGKKKDNLDSINELFPI---GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
                  G    +  +          G           +V   FD + FL  A+  +  +
Sbjct: 161 QRQAAPGGAFPGSGSAYAGEAQRVFGGAAATTAAAAAPAVPAGFDTEAFLRNAKVYFVRL 220

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
             ++ EG +  I +     ++ +    L  R +     ++ +V + D +++         
Sbjct: 221 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 277

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
             ++R  G       +                 ++W   +     +  W+L   +  
Sbjct: 278 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 320


>gi|254187708|ref|ZP_04894220.1| Tim44-like domain protein [Burkholderia pseudomallei Pasteur 52237]
 gi|157935388|gb|EDO91058.1| Tim44-like domain protein [Burkholderia pseudomallei Pasteur 52237]
          Length = 339

 Score = 59.9 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57
           F  M +   +I L A    ++  +       + G ++P           G   +S+    
Sbjct: 121 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 176

Query: 58  GIITLGKGKKKDNLDSINELFPI---GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
                  G    +  +          G           +V   FD + FL  A+  +  +
Sbjct: 177 QRQAAPGGAFPGSGSAYAGEAQRVFGGAAATTAAAAAPAVPAGFDTEAFLRNAKVYFVRL 236

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
             ++ EG +  I +     ++ +    L  R +     ++ +V + D +++         
Sbjct: 237 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 293

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
             ++R  G       +                 ++W   +     +  W+L   +  
Sbjct: 294 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 336


>gi|319945468|ref|ZP_08019728.1| Tim44 domain protein [Lautropia mirabilis ATCC 51599]
 gi|319741254|gb|EFV93681.1| Tim44 domain protein [Lautropia mirabilis ATCC 51599]
          Length = 318

 Score = 59.5 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 74/239 (30%), Gaps = 33/239 (13%)

Query: 7   DSGDFLI-LLFAFITFFVFLQLRGVLGKK---------TGNEKPFS----GFFSGKYVFS 52
            SG FL+ +L A +  F F     + GK+          G+  PF+      F+      
Sbjct: 98  GSGIFLLMILLAGLAIFAF----RMFGKRLQQQQQAQAAGSGAPFAGNLRDAFNNSGKQG 153

Query: 53  KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
           + D     +   G       +     P            + V   FD + F+ +A+  + 
Sbjct: 154 QNDMFRQNSNAGGLFSQTPAAGAAQAPAADSTVSGYTAAMQVPGGFDTEAFVRQAKVQFV 213

Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
            +  +F       + +     ++ + N  +  R S  +   + +V ++  ++     E  
Sbjct: 214 RLQAAFDARNADDLREFTSPEMFGELNIDMMQRGSAPQT--TEVVELN-AELTGMHQEGP 270

Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
            +  ++               L+            +IW F R        WVL   +  
Sbjct: 271 ILVASVLFS-----------GLIREEPNSPAEPFSEIWNFTRP-ASGASGWVLAGIQQP 317


>gi|152981843|ref|YP_001354800.1| hypothetical protein mma_3110 [Janthinobacterium sp. Marseille]
 gi|151281920|gb|ABR90330.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 307

 Score = 59.5 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 75/228 (32%), Gaps = 24/228 (10%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
           F  M S   ++ L  F   F++  ++    K  GN    +   S    +S ++    I  
Sbjct: 102 FASMISTILMVALLGFAAMFIYRMIKN---KSAGN----NAQPSFANGYSAKNSTPDIGS 154

Query: 63  GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
           G  ++     ++    P+ +        +  +  DFD + F+  A+  +  +  ++ +  
Sbjct: 155 GLNQQYQQPSALQSAAPMAS--GAAYEAVNELPADFDVESFIRNAKTYFIRLQAAWDKAD 212

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
           ++ I +     ++ +    L  R         + V   + +        N    +I+   
Sbjct: 213 INDIREFTTPEMFAELKLQLQER---GATPNVTDVVTLNGEFYGVETVGNDYIASIKF-- 267

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                      ++  +D        + W   + +   N  WVL   + 
Sbjct: 268 ---------TGMIREADHAPTEPFSEAWNLSKPVN-GNGGWVLAGIQQ 305


>gi|332716434|ref|YP_004443900.1| hypothetical protein AGROH133_11996 [Agrobacterium sp. H13-3]
 gi|325063119|gb|ADY66809.1| hypothetical protein AGROH133_11996 [Agrobacterium sp. H13-3]
          Length = 360

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 3/119 (2%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           +  ++       + KL          + LS   ++        V +    +  A  EE  
Sbjct: 243 VQAAYGAEDYGTLRKLTTPEAMSYLAEELSDNATSGVKNDVRDVTLLQGDVAEAWHEEGQ 302

Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
            Y T+ +    I    D+    +I  D +   + +++WTFVR     N NW + + +  
Sbjct: 303 DYATVAMRYSAIDIMRDRTSGKVIEGDEQHPSEAVEMWTFVR--RGGNDNWQVAAIQAA 359


>gi|260549298|ref|ZP_05823518.1| import inner membrane translocase subunit Tim44 [Acinetobacter sp.
           RUH2624]
 gi|260407704|gb|EEX01177.1| import inner membrane translocase subunit Tim44 [Acinetobacter sp.
           RUH2624]
          Length = 328

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 75/224 (33%), Gaps = 30/224 (13%)

Query: 13  ILLFAFITFFVFLQLRGVLG--KKTGNEKPFSGFFSGKYVF---SKRDERGIITLGKGKK 67
           +LL A + FFVF +    LG  KK     P++   +G+  F   +        T   G+ 
Sbjct: 130 VLLAAAVAFFVFRK----LGGKKKLAANNPYAPNSNGQNTFGRSAAPTNSNDNTNIFGQS 185

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
                +    F   T  N        +    +P  FL  AR  +  I        +  I 
Sbjct: 186 VGGGTATQAPFGGATTSNG-----NQLPDGSEPASFLRVARQRFNHIQSINSASNIEEIR 240

Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
           + +   +Y    + +   +  +    +    ++ M + +A+ E     +++R        
Sbjct: 241 RYLTPELYNSMYNDIMENQDQDV---AEFSNLNAMVVDSAT-ENGQYIVSVRF------- 289

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
                  +      +     +IW FV+ +     +WV+   +  
Sbjct: 290 ----TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 328


>gi|241258750|ref|YP_002978634.1| import inner membrane translocase subunit Tim44 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240863220|gb|ACS60883.1| import inner membrane translocase subunit Tim44 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 331

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 6/122 (4%)

Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
            +  ++       + +L          + L    +N    + S V +    I  A  E+ 
Sbjct: 210 QVQTAYGAEDYGTLRRLTTLEAMSYLAEELGENATNGVRNRVSDVKLLQGDIAEAWREDG 269

Query: 173 TVYITI--RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             Y T+  R          D    ++S D     +  ++WTFVR        W L + + 
Sbjct: 270 QEYATLAMRYSSIDAMVERDS-GRVVSGDDRRPSESTEVWTFVRKSGAD---WKLAAIQG 325

Query: 231 GE 232
            E
Sbjct: 326 AE 327


>gi|332380812|gb|AEE65659.1| hypothetical protein BPTD_0159 [Bordetella pertussis CS]
          Length = 334

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 69/222 (31%), Gaps = 24/222 (10%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGK-KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
              +++FA I  F+  +LRG  G  +   +  +      +     +      +L     +
Sbjct: 129 LIALVVFAVI--FIVRRLRG--GAPRQAMQGAYGAAGGNRPGQPSQQPMWRESLNPAPAQ 184

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
               +         +        +     FD   FL +A++ +  I   +  G+V ++  
Sbjct: 185 QPAAAPAAAAAALPKAGDDGNWFIPGD--FDTPRFLQQAKDQFVRIQGIWDSGEVESLRD 242

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
            +   +  +    L  R +     +  L+     +++      +    ++R  G      
Sbjct: 243 FLTDDLISELKPQLEARGAAANKTEVVLLN---AELLGIETVSDGHLASVRFSGMLR--- 296

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                    +      +  ++W       P++  W+L   + 
Sbjct: 297 --------EAPGTEAFRFEEVWNL---FKPADGGWLLAGIQQ 327


>gi|322390169|ref|ZP_08063701.1| hypothetical protein HMPREF8577_1171 [Streptococcus parasanguinis
           ATCC 903]
 gi|321143129|gb|EFX38575.1| hypothetical protein HMPREF8577_1171 [Streptococcus parasanguinis
           ATCC 903]
          Length = 327

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 10/167 (5%)

Query: 50  VFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN 109
                D     +   G K+   +             + +R I  +   FD   FL++ + 
Sbjct: 101 AKEANDSDESFSSNSGPKRTTEERAGRPIE---NNYEAIRRIRKLDPMFDEDRFLSQVKL 157

Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN-AS 168
            Y  +  ++ E   +++  L  + +Y+     L      +       V ++D KI +   
Sbjct: 158 VYLQLQSAWTEKDWNSVRNLESTSLYEQHLTQLQEHIRAKTTNVLERVRVEDSKIKDFIE 217

Query: 169 IEENTVYITIRIVGQFISASY-DKDNLLISSDPEIFGKVIDIWTFVR 214
             E    I + +          D+   +I  DP       D++T  R
Sbjct: 218 NPEGNDRIEVILSSTMRDYIRNDETGRVIEGDP-----TKDLFTVYR 259


>gi|226196729|ref|ZP_03792309.1| Tim44 domain protein [Burkholderia pseudomallei Pakistan 9]
 gi|225931260|gb|EEH27267.1| Tim44 domain protein [Burkholderia pseudomallei Pakistan 9]
          Length = 323

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57
           F  M +   +I L A    ++  +       + G ++P           G   +S+    
Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 160

Query: 58  GIITLGKGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
                  G    +  +          G           +V   FD + FL  A+  +  +
Sbjct: 161 QRQAAPGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 220

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
             ++ EG +  I +     ++ +    L  R +     ++ +V + D +++         
Sbjct: 221 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAG--TNQTDVVQL-DAELLAVEDRGGEH 277

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
             ++R  G       +                 ++W   +     +  W+L   +  
Sbjct: 278 LASVRFHG----LIREAQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 320


>gi|33591411|ref|NP_879055.1| hypothetical protein BP0162 [Bordetella pertussis Tohama I]
 gi|33571053|emb|CAE40541.1| putative membrane protein [Bordetella pertussis Tohama I]
          Length = 340

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 36/231 (15%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGK----------KTGNEKPFSGFFSGKYVFSKRDERGI 59
              +++FA I  F+  +LRG  G             G  +P        +  S       
Sbjct: 129 LIALVVFAVI--FIVRRLRG--GAPRQAMQGAYGAAGGNRPGQPSQQPMWRESLNPAPAQ 184

Query: 60  ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
                        +     P              +  DFD   FL +A++ +  I   + 
Sbjct: 185 QPAAAPVAAAAPAAAAAALPKAGDDGNWF-----IPGDFDTPRFLQQAKDQFVRIQGIWD 239

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
            G+V ++   +   +  +    L  R +     +  L+     +++      +    ++R
Sbjct: 240 SGEVESLRDFLTDDLISELKPQLEARGAAANKTEVVLLN---AELLGIETVSDGHLASVR 296

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             G               +      +  ++W       P++  W+L   + 
Sbjct: 297 FSGMLR-----------EAPGTEAFRFEEVWNL---FKPADGGWLLAGIQQ 333


>gi|33598497|ref|NP_886140.1| hypothetical protein BPP3994 [Bordetella parapertussis 12822]
 gi|33574626|emb|CAE39277.1| putative membrane protein [Bordetella parapertussis]
          Length = 340

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 36/231 (15%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGK----------KTGNEKPFSGFFSGKYVFSKRDERGI 59
              +++FA I  F+  +LRG  G             G  +P        +  S       
Sbjct: 129 LIALVVFAVI--FIVRRLRG--GAPRQAMQGAYGAAGGNRPGQPSQQPMWRESLNPAPAQ 184

Query: 60  ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
                        +     P              +  DFD   FL +A++ +  I   + 
Sbjct: 185 QPAAAPVAAAAPAAAAAALPKAGDDGNWF-----IPGDFDTPRFLQQAKDQFVRIQGIWD 239

Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
            G+V ++   +   +  +    L  R +     +  L+     +++      +    ++R
Sbjct: 240 SGEVESLRDFLTDDLISELKPQLEARGAAANKTEVVLLN---AELLGIETVSDGHLASVR 296

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             G               +      +  ++W       P++  W+L   + 
Sbjct: 297 FSGMLR-----------EAPGTEAFRFEEVWNL---FKPADGGWLLAGIQQ 333


>gi|209552377|ref|YP_002284292.1| import inner membrane translocase subunit Tim44 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209539489|gb|ACI59421.1| import inner membrane translocase subunit Tim44 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 332

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 6/121 (4%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           +  ++       + +L          + L    +N    + S V +    I  A  E+  
Sbjct: 212 VQTAYGAEDYATLRRLTTPEAMSYLAEELGENATNGVRNRVSDVKLLQGDIAEAWREDGQ 271

Query: 174 VYITI--RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
            Y T+  R          +    ++S D     +  ++WTFVR        W L + +  
Sbjct: 272 EYATLAMRYSSIDAMVERNS-GRVVSGDDRRPSESTEVWTFVRKPGAD---WKLAAIQGS 327

Query: 232 E 232
           E
Sbjct: 328 E 328


>gi|294891975|ref|XP_002773832.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239879036|gb|EER05648.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 497

 Score = 59.5 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 51/129 (39%), Gaps = 4/129 (3%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T + + +R++      F     + +  N    +I+  F EG    ++       +   N 
Sbjct: 334 TEIAQSIREMKETDPHFRLSQLVEDVENVVAPSIIRWFLEGDAEDLKLHCGEAAFAAVNA 393

Query: 141 SLSTRKSNEKNVKSSLV-GIDDMKIINASIEE--NTVYITIRIVGQFISASYDKDNLLIS 197
           S+  R++ + ++  +++ G +D+++  A      ++         Q I+   ++   ++ 
Sbjct: 394 SIDARRNQKLSLDPTILQGPEDLELKGAKSGGEVDSPCFIFTFSTQQINCLRNEAGEVVE 453

Query: 198 SDPEIFGKV 206
              +   +V
Sbjct: 454 GAIDDIRQV 462


>gi|217420068|ref|ZP_03451574.1| Tim44 domain protein [Burkholderia pseudomallei 576]
 gi|217397372|gb|EEC37388.1| Tim44 domain protein [Burkholderia pseudomallei 576]
          Length = 339

 Score = 59.1 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57
           F  M +   +I L A    ++  +       + G ++P           G   +S+    
Sbjct: 121 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 176

Query: 58  GIITLGKGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
                  G    +  +          G           +V   FD + FL  A+  +  +
Sbjct: 177 QRQAAPGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 236

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
             ++ EG +  I +     ++ +    L  R +     ++ +V + D +++         
Sbjct: 237 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAG--TNQTDVVQL-DAELLAVEDRGGEH 293

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
             ++R  G       +                 ++W   +     +  W+L   +  
Sbjct: 294 LASVRFHG----LIREAQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 336


>gi|167749610|ref|ZP_02421737.1| hypothetical protein EUBSIR_00568 [Eubacterium siraeum DSM 15702]
 gi|167657363|gb|EDS01493.1| hypothetical protein EUBSIR_00568 [Eubacterium siraeum DSM 15702]
          Length = 321

 Score = 59.1 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 54/159 (33%), Gaps = 3/159 (1%)

Query: 61  TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
           + G   +  +++  N + P  T   + +  I     +F   D +   +  Y  I +++ +
Sbjct: 102 SGGGTTRPSSMNGANVVLPNRTEQIEGI--IKQKDPNFSASDLITFTKQVYIDIENAWCK 159

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
             +  +  ++   +Y      +  +           + ID   + +   +    Y+T  +
Sbjct: 160 RDMTPVRPVMHENLYNTTCKQVQAKIEQGVVYHYESIAIDTAYLTSYERDSQFEYVTAYL 219

Query: 181 VGQFISASYD-KDNLLISSDPEIFGKVIDIWTFVRNIPP 218
             + I    D K   +I  D            FVR++  
Sbjct: 220 TSRMIDYQVDEKTGKIIRGDKTTRWVQKYKMKFVRSLGV 258


>gi|220925671|ref|YP_002500973.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           nodulans ORS 2060]
 gi|219950278|gb|ACL60670.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           nodulans ORS 2060]
          Length = 318

 Score = 59.1 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 13/128 (10%)

Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164
           +++E     +  ++    V  + +L    +   F + L    +     + S V +    +
Sbjct: 196 DAFERTLTQVQLAYGAEDVATLRRLATPEMVGYFTEELQANAARGVINRISDVKLQQGDL 255

Query: 165 INASIEENTVYITI--RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222
             A  E  T Y T+  R   + ++       ++ + DPE      ++WTF R+       
Sbjct: 256 SEAWREGPTDYATVAMRYTLRDVTVERGSGRVVGTGDPEAV----EVWTFRRDRGGP--- 308

Query: 223 WVLISTKL 230
           W+L + + 
Sbjct: 309 WLLSAIQQ 316


>gi|302187827|ref|ZP_07264500.1| Tim44-like domain-contain protein [Pseudomonas syringae pv.
           syringae 642]
          Length = 280

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 64/221 (28%), Gaps = 37/221 (16%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F IL+   I  F+  +      ++   ++P        Y             G      
Sbjct: 95  LFDILIMGLIA-FLIFRFIA---RRRQQQQPKMAAAGAPYQRETSQPAQNPVFGSSSPAS 150

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
               IN                      FD + FL+ AR  ++++   +   ++  I + 
Sbjct: 151 AAPVINAPA------------------WFDEQRFLDAARGHFQSLQQHWDANEMDKIAEF 192

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V  ++ Q        R       +S+ +    +++       +    T+   G   ++ +
Sbjct: 193 VTPQMLQFLK---KERADLGDGFQSTYIENLQVQLDGVDDRADKTIATLTFSGVSKTSRF 249

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D    + S            W   R    + P W++   + 
Sbjct: 250 D-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 278


>gi|254181778|ref|ZP_04888375.1| Tim44-like domain protein [Burkholderia pseudomallei 1655]
 gi|184212316|gb|EDU09359.1| Tim44-like domain protein [Burkholderia pseudomallei 1655]
          Length = 323

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPF-----SGFFSGKYVFSKRDER 57
           F  M +   +I L A    ++  +       + G ++P           G   +S+    
Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPALNRGHDGYSQDAGV 160

Query: 58  GIITLGKGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
                  G    +  +          G           +V   FD + FL  A+  +  +
Sbjct: 161 QRPAAPGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 220

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
             ++ EG +  I +     ++ +    L  R +     ++ +V + D +++         
Sbjct: 221 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 277

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
             ++R  G       +                 ++W   +     +  W+L   +  
Sbjct: 278 LASVRFHG----LIREAQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 320


>gi|209884542|ref|YP_002288399.1| import inner membrane translocase, subunit Tim44 [Oligotropha
           carboxidovorans OM5]
 gi|209872738|gb|ACI92534.1| import inner membrane translocase, subunit Tim44 [Oligotropha
           carboxidovorans OM5]
          Length = 320

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 48/127 (37%), Gaps = 9/127 (7%)

Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164
            ++E     +  ++      A++ +    +    +  L+   +     K S V +    +
Sbjct: 196 EAFERRLSEVQAAWSNEDTAALQTIATPEMASYLSQDLADNAARGVVNKVSDVKLLQGDL 255

Query: 165 INASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223
             A  E  T Y T+ +    +  + D+    ++    +   +V +IWTF R     + +W
Sbjct: 256 AEAWREGPTDYATVAMRFSLVDKTIDRASGRVVEGS-DTPEEVTEIWTFARR---PDTDW 311

Query: 224 VLISTKL 230
            L + + 
Sbjct: 312 ELSAIQQ 318


>gi|256828118|ref|YP_003156846.1| import inner membrane translocase subunit Tim44 [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577294|gb|ACU88430.1| import inner membrane translocase subunit Tim44 [Desulfomicrobium
           baculatum DSM 4028]
          Length = 283

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 45/136 (33%), Gaps = 14/136 (10%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
            FD ++FL+ A+ +Y  +  ++    +  + +   + V+ +         +  K  +   
Sbjct: 161 GFDAREFLDGAKAAYTRLQAAWDARDLDDLRQFTSTEVFAEIQSQAEADPNPGKT-EILF 219

Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
           +   +  ++      N    T+           D  +           +V + W F R  
Sbjct: 220 L---EASLLEVKAVGNQTIATVLFDTMLR---EDSTSAPAE-------QVREAWHFSRYE 266

Query: 217 PPSNPNWVLISTKLGE 232
                +WV+   +  E
Sbjct: 267 TGGAKHWVVEGIQQLE 282


>gi|326934094|ref|XP_003213130.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like [Meleagris
           gallopavo]
          Length = 341

 Score = 59.1 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 12/145 (8%)

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
            +R +     +F  K F   A+  Y    +S        +  LV  R Y D       R 
Sbjct: 165 ALRKVKDHDPNFSTKTFPEMAQEIYVEAHNSLANFNKQKLHSLVTERCYPDMV-----RG 219

Query: 147 SNEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSD 199
           +  K ++ S V       +  ++  +     N    +T+R+  +   A YD+   L+   
Sbjct: 220 NRYKTIRWSFVESLEPPRVVHVRCTSIVNRGNLYGQVTVRMHSRQTLAIYDRFGRLMYGG 279

Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWV 224
            ++   V++   F R +      W 
Sbjct: 280 EQLPKDVLEYVVFERYLVNPYGTWR 304


>gi|320164944|gb|EFW41843.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 499

 Score = 58.7 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 70/158 (44%), Gaps = 4/158 (2%)

Query: 72  DSINELFPIGTRLNKVMRDIVSVYTDFDPKDF-LNEARNSYEAIVDSFFEGKVHAIEKLV 130
           DSI+ +F   + +  V+ +I  V  +F+  +F ++  +     ++++ F+  + A+E+  
Sbjct: 332 DSISNIFSP-SEIGMVIGEINRVDPNFNVDEFTIDCEKQIIPILMEAVFKSDLKALEQWC 390

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
               ++   + + +R++    ++  ++ ++ +++  A + E    +      Q+     +
Sbjct: 391 HEVCFRRLLEPIKSRRALGVQLEHKVMELNGVELRTAQLMEQGPTLVFIFNMQYTRVLRN 450

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSN--PNWVLI 226
             + +I  DP+            R++   +   +W +I
Sbjct: 451 SSSEIIEGDPDQILAATYAMALTRDLNVYDTHASWRVI 488


>gi|298489454|ref|ZP_07007465.1| putative membrane protein [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298156028|gb|EFH97137.1| putative membrane protein [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330890590|gb|EGH23251.1| Tim44-like domain-containing protein [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 280

 Score = 58.7 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 63/221 (28%), Gaps = 37/221 (16%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F IL+   I  F+  +      ++   ++P        Y             G      
Sbjct: 95  LFDILIMGLIA-FLIFRFIA---RRRQQQQPKMAAAGAPYQRESSQPAQNPIFGSSSPAS 150

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
               IN                      F+ + FL  AR  ++++   +   ++  I + 
Sbjct: 151 AAPVINAPA------------------WFNEERFLEAARGHFQSLQQHWDANEMDKIAEF 192

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V  ++ Q        R       +S+ +    +++       +    T+   G   S+ +
Sbjct: 193 VTPQMLQFLK---KERADLGDGFQSTYIDNLQVQLDGVDDRADKTIATLTFSGVSKSSRF 249

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D    + S            W   R    + P W++   + 
Sbjct: 250 D-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 278


>gi|254251433|ref|ZP_04944751.1| hypothetical protein BDAG_00618 [Burkholderia dolosa AUO158]
 gi|124894042|gb|EAY67922.1| hypothetical protein BDAG_00618 [Burkholderia dolosa AUO158]
          Length = 341

 Score = 58.7 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 73/238 (30%), Gaps = 34/238 (14%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
           F  M +   +I L A +  ++  +      ++    +P    +S     S        + 
Sbjct: 124 FAGMMANFIVIALLAMVGIWLIRKFMN---RR----RPQEPAYSVGGASSSGSYSQGSSF 176

Query: 63  GKGKKKDNLDSINELFPIG----------TRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
             G   +     +                     V    + V   FD + FL  A+  + 
Sbjct: 177 QPGSSSNYAGGSSYANEAQRVFGGGAASAAPAAGVAAPALQVPAGFDTEAFLRSAKVYFV 236

Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
            +  ++ +G +  I +     ++ +    L +R    +  ++ +V + D +++       
Sbjct: 237 RLQAAWDQGNLTDIREFTTPEMFAEIKIDLDSR--GNEANQTDVVQL-DAELVAIEDRGI 293

Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
               ++R  G  I  S +                 ++W   +     +  W+L   + 
Sbjct: 294 EQSASVRFHG-LIRESANASAEPFD----------EVWNLSK---SGSQGWLLAGIQQ 337


>gi|190894520|ref|YP_001984813.1| putative import inner membrane translocase, TIM family [Rhizobium
           etli CIAT 652]
 gi|190700181|gb|ACE94263.1| putative import inner membrane translocase protein, TIM family
           [Rhizobium etli CIAT 652]
          Length = 333

 Score = 58.7 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 6/118 (5%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           +  ++       + +L          + L    +N    + S V +    I  A  E+  
Sbjct: 213 VQTAYGAEDYGTLRRLTTPEAMSYLAEELGENATNGVRNRVSDVKLLQGDIAEAWREDGQ 272

Query: 174 VYITI--RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
            Y T+  R          D    ++S D     +  +IWTFVR        W L + +
Sbjct: 273 EYATLAMRYSSIDAMVERDS-GRVVSGDDRRPSESTEIWTFVRKPGGD---WKLAAIQ 326


>gi|239905745|ref|YP_002952484.1| hypothetical protein DMR_11070 [Desulfovibrio magneticus RS-1]
 gi|239795609|dbj|BAH74598.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 315

 Score = 58.7 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 14/135 (10%)

Query: 96  TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155
             FD  DFL  A+  +  +  S+ +  +  IE          F   +  + + +     +
Sbjct: 192 PGFDAADFLAGAKALFARMQQSWSKRDLADIEAFATP----AFMADVRKQAAEDPTPAPT 247

Query: 156 LVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRN 215
            V + D K++    +      +                   +  PE    V ++W F R 
Sbjct: 248 DVLLVDAKLLEVRSQGGATIASAYFDVLMR-------EDPKAGQPEQ---VREVWHFTRK 297

Query: 216 IPPSNPNWVLISTKL 230
                  W L + + 
Sbjct: 298 ETVPGDAWKLDAIQQ 312


>gi|167579860|ref|ZP_02372734.1| Tim44-like domain family protein [Burkholderia thailandensis TXDOH]
          Length = 324

 Score = 58.7 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/247 (10%), Positives = 68/247 (27%), Gaps = 50/247 (20%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
           F  M +   +I L A    ++               + F      +   +    +  +  
Sbjct: 105 FASMMANVIVIALLAMAGIWLV--------------RKFMNRRGAQQQPAYAGGQPSLNR 150

Query: 63  GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT-------------------DFDPKDF 103
             G    +  +  +  P G                                   FD + F
Sbjct: 151 DHGGYNQDAGAWRQAAPNGAFAGSGSTYAGEAQRVFGGAATAAAPAAAPMVPAGFDTEAF 210

Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163
           L  A+  +  +  ++ EG +  I +     ++ +    L  R    +N ++ +V + D +
Sbjct: 211 LRNAKVYFVRLQAAWDEGNLADIREFTTPEMFAEVKIDLDGR-GAGEN-QTDVVRL-DAE 267

Query: 164 IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223
           ++         + ++R  G       +                 ++W   +     +  W
Sbjct: 268 LLAVEDRGGEHFASVRFHG----MIRETQGAAAE-------PFDEVWNLSK---SGSQGW 313

Query: 224 VLISTKL 230
           +L   + 
Sbjct: 314 LLAGIQQ 320


>gi|134296928|ref|YP_001120663.1| import inner membrane translocase subunit Tim44 [Burkholderia
           vietnamiensis G4]
 gi|134140085|gb|ABO55828.1| import inner membrane translocase, subunit Tim44 [Burkholderia
           vietnamiensis G4]
          Length = 341

 Score = 58.7 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 72/236 (30%), Gaps = 28/236 (11%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
           F  M +   +I L A +  ++  +      ++  +E  +S   S                
Sbjct: 122 FASMMANVIVIALLAMVGIWLIRKFMN---RRRPHEPAYSAGGSASSAGGYAQGSSFQQG 178

Query: 63  GKGKKKDNLDSINELFP--------IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
             G    +  S                     +    + V   FD + FL  A+  +  +
Sbjct: 179 SGGNYAGSGSSYANEAQSVFGGGAAAAGAAGALGAAPLQVPAGFDTEAFLRSAKVYFVRL 238

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
             ++ +G +  I +     ++ +    L +R    +  ++ +V + D +++         
Sbjct: 239 QAAWDQGNMADIREFTTPEMFAEIKIDLDSR--GNEANQTDVVQL-DAELVAIEDRGIEQ 295

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             ++R  G  I  S +                 ++W   ++       W+L   + 
Sbjct: 296 AASVRFHG-LIRESANASAAPFE----------EVWNLSKSGGQG---WLLAGIQQ 337


>gi|262369516|ref|ZP_06062844.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262315584|gb|EEY96623.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 321

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 71/230 (30%), Gaps = 37/230 (16%)

Query: 11  FLILLFAFITFFVFLQLRGVLGKKTGNEK-----PFSGFFSGKYVF-----SKRDERGII 60
             ILL A + FF+F        +K G +K     P++              + R      
Sbjct: 117 IWILLAAAVAFFIF--------RKMGAKKKVAANPYAPNNGSTQAPFGQQAAPRTSNDNS 168

Query: 61  TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
            +       +  +     P G         +       +P  FL  AR  +  I      
Sbjct: 169 NIFGQSVGGSAATPQNNAPFGAAYTNSGSQLPD---GTEPAAFLRIARQRFNHIQSMNTA 225

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
             +  I++ +   +YQ     +   +  +    +    ++   + +++ E +   +++R 
Sbjct: 226 SNISEIQRYLTPDLYQSMYQDIMANQDQDV---AEFSNLN-AMVADSATENSQYVVSVRF 281

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                         +      +     ++W FV+    +  +W++   + 
Sbjct: 282 -----------TGTVSEDLNSLPQPFAEVWHFVKPAGSTQ-DWLVAGIQQ 319


>gi|167617935|ref|ZP_02386566.1| Tim44-like domain family protein [Burkholderia thailandensis Bt4]
          Length = 252

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 74/241 (30%), Gaps = 38/241 (15%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
           F  M +   +I L A         +R  + ++   ++P    ++G      RD  G    
Sbjct: 33  FASMMANVIVIALLAMAG---IWLVRKFMNRRGAQQQP---AYAGGQPSLNRDHGGY--N 84

Query: 63  GKGKKKDNLDSINELFPIGTRLNKVMRDI-------------VSVYTDFDPKDFLNEARN 109
                       +     G+      + +               V   FD + FL  A+ 
Sbjct: 85  QDAGAWRQAAPNDAFAGSGSTYAGEAQRVFGGAATAAAPAAAPMVPAGFDTEAFLRNAKV 144

Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
            +  +  ++ EG +  I +     ++ +    L  R    +N ++ +V + D +++    
Sbjct: 145 YFVRLQAAWDEGNLADIREFTTPEMFAEVKIDLDGR-GAGEN-QTDVVRL-DAELLAVED 201

Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                + ++R  G       +                 ++W   +     +  W+L   +
Sbjct: 202 RGGEHFASVRFHG----MIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQ 247

Query: 230 L 230
            
Sbjct: 248 Q 248


>gi|91778033|ref|YP_553241.1| hypothetical protein Bxe_B2096 [Burkholderia xenovorans LB400]
 gi|91690693|gb|ABE33891.1| Putative membrane protein [Burkholderia xenovorans LB400]
          Length = 318

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 67/225 (29%), Gaps = 29/225 (12%)

Query: 7   DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
           ++    +++ A +  F F+             +P   +  G     + +    +   +  
Sbjct: 119 NALLIGLVVVAGVMLFRFI---------ANRRRPDLAYGHGPANRQQTNGAPFLNQVREA 169

Query: 67  KKD-NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
           + D NL          T     ++             FL  A+  +  +  ++   +   
Sbjct: 170 RPDTNLRDWPRTTMDATGAASSVKAPELAD----QAAFLVSAKAMFMRLQGAWDRNEQGD 225

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
           + +L    ++      L  R         + V   + +++N     +   +++R  GQ  
Sbjct: 226 LFELTTPEMFARLKQDLEIR---GHEPSRTDVTQLEAEVLNTESSADETLVSVRFYGQMR 282

Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                        D +I     +IW  VR     +  W L   + 
Sbjct: 283 -----------EDDAQIVQPFQEIWNMVRR-AHGDEGWRLAGIQQ 315


>gi|83311911|ref|YP_422175.1| hypothetical protein amb2812 [Magnetospirillum magneticum AMB-1]
 gi|82946752|dbj|BAE51616.1| Uncharacterized protein conserved in bacteria [Magnetospirillum
           magneticum AMB-1]
          Length = 347

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 59/188 (31%), Gaps = 19/188 (10%)

Query: 51  FSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNS 110
           F  R +  +       +    + +  +   G            +  +FD        + +
Sbjct: 173 FRGRSQPAVPAGNPYMRTAPGEHVEPMIGAGPVQ-------PRIEREFDAS---GGDQEA 222

Query: 111 YEAIV----DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN 166
           +  I+     ++ +G +  +++     V    ++ +S   S     K   V +    +  
Sbjct: 223 FTEILQGVQKAWSDGNLLQLKRFATPEVVAFLSEDMSRNASEGVANKVENVTLLRGDVSE 282

Query: 167 ASIEENTVYIT--IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
           +  E    Y+T  +           D    +   +P       + WTFVR    +   W+
Sbjct: 283 SWSEGGFDYLTAILTFSCNDYMVRLD-TGAVADGNPHATVTHTEAWTFVR--SSNGGRWL 339

Query: 225 LISTKLGE 232
           L + +  +
Sbjct: 340 LSAVQQVQ 347


>gi|167822777|ref|ZP_02454248.1| Tim44-like domain protein [Burkholderia pseudomallei 9]
          Length = 225

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57
           F  M +   +I L A    ++  +       + G ++P           G   +S+    
Sbjct: 7   FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 62

Query: 58  GIITLGKGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
                  G    +  +          G           +V   FD + FL  A+  +  +
Sbjct: 63  QRQAAPGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 122

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
             ++ EG +  I +     ++ +    L  R +     ++ +V + D +++         
Sbjct: 123 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAG--TNQTDVVQL-DAELLAVEDRGGEH 179

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
             ++R  G       +                 ++W   +     +  W+L   +  
Sbjct: 180 LASVRFHG----LIREAQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 222


>gi|296160985|ref|ZP_06843796.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
           Ch1-1]
 gi|295888684|gb|EFG68491.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
           Ch1-1]
          Length = 330

 Score = 58.7 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 65/193 (33%), Gaps = 16/193 (8%)

Query: 39  KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK-VMRDIVSVYTD 97
           +            S     G +   +  +     + + L P G  L+   +    +V   
Sbjct: 149 RKRDTAQPAYAGGSPSLNSGGMGYSQEPRYSAPPTGSYLEPQGNPLSTPTINAAPAVPAG 208

Query: 98  FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157
           FD + FL  A+  +  +  ++  G    I +     ++ +    LS+R +  +  ++ +V
Sbjct: 209 FDSEAFLRNAKVYFVRLQAAWDVGNTEDIREFTTPEMFAEVKVDLSSRGA--ETNQTDVV 266

Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217
            ++  +++      N  + ++R              L+  +        +++W   +   
Sbjct: 267 QLN-AELLGVEERANEYFASVRFS-----------GLIREAPGAAAEPFVEVWNLSKANR 314

Query: 218 PSNPNWVLISTKL 230
                W+L   + 
Sbjct: 315 AGE-GWLLAGIQQ 326


>gi|28872622|ref|NP_795241.1| hypothetical protein PSPTO_5517 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|302133167|ref|ZP_07259157.1| hypothetical protein PsyrptN_17334 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28855878|gb|AAO58936.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|331017794|gb|EGH97850.1| hypothetical protein PLA106_17269 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 280

 Score = 58.4 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 64/221 (28%), Gaps = 37/221 (16%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F IL+   I  F+  +      ++   ++P        Y             G      
Sbjct: 95  LFDILIMGLIA-FLIFRFIA---RRRQQQQPKMAAAGAPYQRETSQPAQNPIFGSSSPAS 150

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
               IN                      F+ + FL+ AR  ++++   +   ++  I + 
Sbjct: 151 AAPVINAPA------------------WFNEERFLDAARGHFQSLQQHWDANEMDKIAEF 192

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V  ++ Q        R       +S+ +    +++       +    T+   G   ++ +
Sbjct: 193 VTPQMLQFLK---KERADLGDGFQSTFIDNLHVQLDGLDDRADKTIATLTFSGVSKTSRF 249

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D    + S            W   R    + P W++   + 
Sbjct: 250 D-QGEVFSES----------WNMERPQGENQP-WLVAGIRQ 278


>gi|237749468|ref|ZP_04579948.1| hypothetical protein OFBG_01949 [Oxalobacter formigenes OXCC13]
 gi|229380830|gb|EEO30921.1| hypothetical protein OFBG_01949 [Oxalobacter formigenes OXCC13]
          Length = 305

 Score = 58.4 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 77/233 (33%), Gaps = 29/233 (12%)

Query: 4   IKMD-----SGDFLILLFAFITFF-VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER 57
             M      +G    +L   + FF +   +R    + TG  KP     +    ++     
Sbjct: 94  SHMGIGGDFAGMISTVLMLALIFFAIRFLMR----RFTGRGKP-QDQTAYASQYNDNGYN 148

Query: 58  GIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117
              T   G    +  + N+    G+ +      I     DFD   FL  A++ Y  +  +
Sbjct: 149 QSSTPEIGSGLPHQYAGNQTVNTGSGMQNDNWGIPV---DFDVPAFLRAAKSYYIRMQAA 205

Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
           + +  +H I +     ++ +    L  R     N+ + +V + D +++      N    +
Sbjct: 206 WDKADIHDIHEFTTPEMFAEMKLQLQER-GPGPNI-TDVVSL-DAELLGIETLNNEYMAS 262

Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           ++  G       + +               ++W   R I      WVL   + 
Sbjct: 263 VKFSG----MIRESEGAPAE-------PFAEVWNMTRPI-SKEGGWVLAGIQQ 303


>gi|254504893|ref|ZP_05117044.1| Tim44-like domain family [Labrenzia alexandrii DFL-11]
 gi|222440964|gb|EEE47643.1| Tim44-like domain family [Labrenzia alexandrii DFL-11]
          Length = 335

 Score = 58.4 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 54/195 (27%), Gaps = 24/195 (12%)

Query: 37  NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT 96
            E+  +     +                G      D         T              
Sbjct: 160 FERAPNQPAPDQNASQATPFSFGGGGASGSTSQTFDQPATQPYEATAA------------ 207

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
             D   F     +    +  ++      A+ +L          + L    S  K    S 
Sbjct: 208 --DLDRF----EDMLSEVQSAYASEDYAALRQLATPEAMSYLAEELGELASAGKKNVVSD 261

Query: 157 VGIDDMKIINASIEENTVYITI--RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVR 214
           V +    +  +  E    Y+T+  R       A  D    +IS DP+   +  ++WTFVR
Sbjct: 262 VKLLQGDVAESWNENGNDYVTVAMRYSAVDYIAKRDSH-EVISGDPDAPSESTEVWTFVR 320

Query: 215 NIPPSNPNWVLISTK 229
           +       W+L + +
Sbjct: 321 SSGGD---WLLSAIQ 332


>gi|115352833|ref|YP_774672.1| import inner membrane translocase subunit Tim44 [Burkholderia
           ambifaria AMMD]
 gi|115282821|gb|ABI88338.1| import inner membrane translocase, subunit Tim44 [Burkholderia
           ambifaria AMMD]
          Length = 344

 Score = 58.4 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 72/237 (30%), Gaps = 29/237 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
           F  M +   +I L A I       +R  + ++   E  +S   S                
Sbjct: 124 FASMMANVIVIALLAMIG---IWLVRKFMNRRRSQEPAYSVGGSASSSGGYSQSPSFQQG 180

Query: 63  GKGKKKDNLDSINELFPIG---------TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
             G       S       G              +    + V   FD + FL  A+  +  
Sbjct: 181 STGNNYAGSGSSYANEAQGVFGGGAAAAGAAGAMAAAPLQVPAGFDTEAFLRSAKVYFVR 240

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           +  ++ +G +  I +     ++ +    L +R    +  ++ +V + D +++        
Sbjct: 241 LQAAWDQGNLADIREFTTPEMFAEIKIDLDSR--GNEANQTDVVQL-DAELVAIEDRGIE 297

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
              ++R  G  I  S +     +           ++W   +     +  W+L   + 
Sbjct: 298 QSASVRFHG-LIRESANAPAAPLD----------EVWNLSK---SGSQGWLLAGIQQ 340


>gi|172061690|ref|YP_001809342.1| import inner membrane translocase subunit Tim44 [Burkholderia
           ambifaria MC40-6]
 gi|171994207|gb|ACB65126.1| import inner membrane translocase subunit Tim44 [Burkholderia
           ambifaria MC40-6]
          Length = 344

 Score = 58.4 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 72/237 (30%), Gaps = 29/237 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
           F  M +   +I L A I       +R  + ++   E  +S   S                
Sbjct: 124 FASMMANVIVIALLAMIG---IWLVRKFMNRRRSQEPAYSVGGSASSSGGYSQSPSFQQG 180

Query: 63  GKGKKKDNLDSINELFPIG---------TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
             G       S       G              +    + V   FD + FL  A+  +  
Sbjct: 181 STGNNYAGSGSSYANEAQGVFGGGAAAAGAAGAMAAAPLQVPAGFDTEAFLRSAKVYFVR 240

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           +  ++ +G +  I +     ++ +    L +R    +  ++ +V + D +++        
Sbjct: 241 LQAAWDQGNLADIREFTTPEMFAEIKIDLDSR--GNEANQTDVVQL-DAELVAIEDRGIE 297

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
              ++R  G  I  S +     +           ++W   +     +  W+L   + 
Sbjct: 298 QSASVRFHG-LIRESANAPAAPLD----------EVWNLSK---SGSQGWLLAGIQQ 340


>gi|213968509|ref|ZP_03396652.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|301384751|ref|ZP_07233169.1| hypothetical protein PsyrptM_19042 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062457|ref|ZP_07253998.1| hypothetical protein PsyrptK_20918 [Pseudomonas syringae pv. tomato
           K40]
 gi|213926797|gb|EEB60349.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 280

 Score = 58.4 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 64/221 (28%), Gaps = 37/221 (16%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F IL+   I  F+  +      ++   ++P        Y             G      
Sbjct: 95  LFDILIMGLIA-FLIFRFIA---RRRQQQQPKMAAAGAPYQRETSQPAQNPIFGSSSPAS 150

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
               IN                      F+ + FL+ AR  ++++   +   ++  I + 
Sbjct: 151 AAPVINAPA------------------WFNEERFLDAARGHFQSLQQHWDANEMDKIAEF 192

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V  ++ Q        R       +S+ +    +++       +    T+   G   ++ +
Sbjct: 193 VTPQMLQFLK---KERADLGDGFQSTFIDNLHVQLDGLDDRADKTIATLTFSGVSKTSRF 249

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D    + S            W   R    + P W++   + 
Sbjct: 250 D-QGEVFSES----------WNMERPQGENQP-WLVAGIRQ 278


>gi|257140227|ref|ZP_05588489.1| Tim44-like domain-contain protein [Burkholderia thailandensis E264]
          Length = 324

 Score = 58.4 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 74/241 (30%), Gaps = 38/241 (15%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
           F  M +   +I L A         +R  + ++   ++P    ++G      RD  G    
Sbjct: 105 FASMMANVIVIALLAMAG---IWLVRKFMNRRGAQQQP---AYAGGQPSLNRDHGGY--N 156

Query: 63  GKGKKKDNLDSINELFPIGTRLNKVMRDI-------------VSVYTDFDPKDFLNEARN 109
                       +     G+      + +               V   FD + FL  A+ 
Sbjct: 157 QDAGAWRQAAPNDAFAGSGSTYAGEAQRVFGGAATAAAPAAAPMVPAGFDTEAFLRNAKV 216

Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
            +  +  ++ EG +  I +     ++ +    L  R    +N ++ +V + D +++    
Sbjct: 217 YFVRLQAAWDEGNLADIREFTTPEMFAEVKIDLDGR-GAGEN-QTDVVRL-DAELLAVED 273

Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                + ++R  G       +                 ++W   +     +  W+L   +
Sbjct: 274 RGGEHFASVRFHG----MIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQ 319

Query: 230 L 230
            
Sbjct: 320 Q 320


>gi|134279597|ref|ZP_01766309.1| Tim44 domain protein [Burkholderia pseudomallei 305]
 gi|134248797|gb|EBA48879.1| Tim44 domain protein [Burkholderia pseudomallei 305]
          Length = 323

 Score = 58.4 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPF-----SGFFSGKYVFSKRDER 57
           F  M +   +I L A    ++  +       + G ++P           G   +S+    
Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPALNRGHDGYSQDAGI 160

Query: 58  GIITLGKGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
                  G    +  +          G           +V   FD + FL  A+  +  +
Sbjct: 161 QRPAAPGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 220

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
             ++ EG +  I +     ++ +    L  R +     ++ +V + D +++         
Sbjct: 221 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 277

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
             ++R  G       +                 ++W   +     +  W+L   +  
Sbjct: 278 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 320


>gi|83718851|ref|YP_441111.1| Tim44-like domain-contain protein [Burkholderia thailandensis E264]
 gi|83652676|gb|ABC36739.1| Tim44-like domain family [Burkholderia thailandensis E264]
          Length = 340

 Score = 58.0 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 74/241 (30%), Gaps = 38/241 (15%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
           F  M +   +I L A         +R  + ++   ++P    ++G      RD  G    
Sbjct: 121 FASMMANVIVIALLAMAG---IWLVRKFMNRRGAQQQP---AYAGGQPSLNRDHGGY--N 172

Query: 63  GKGKKKDNLDSINELFPIGTRLNKVMRDI-------------VSVYTDFDPKDFLNEARN 109
                       +     G+      + +               V   FD + FL  A+ 
Sbjct: 173 QDAGAWRQAAPNDAFAGSGSTYAGEAQRVFGGAATAAAPAAAPMVPAGFDTEAFLRNAKV 232

Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
            +  +  ++ EG +  I +     ++ +    L  R    +N ++ +V + D +++    
Sbjct: 233 YFVRLQAAWDEGNLADIREFTTPEMFAEVKIDLDGR-GAGEN-QTDVVRL-DAELLAVED 289

Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
                + ++R  G       +                 ++W   +     +  W+L   +
Sbjct: 290 RGGEHFASVRFHG----MIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQ 335

Query: 230 L 230
            
Sbjct: 336 Q 336


>gi|71735681|ref|YP_277225.1| Tim44-like domain-contain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257485679|ref|ZP_05639720.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289625508|ref|ZP_06458462.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289649763|ref|ZP_06481106.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|71556234|gb|AAZ35445.1| Tim44-like domain family [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|320321766|gb|EFW77864.1| Tim44-like domain-containing protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320331516|gb|EFW87456.1| Tim44-like domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330870932|gb|EGH05641.1| Tim44-like domain-containing protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330880967|gb|EGH15116.1| Tim44-like domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330986943|gb|EGH85046.1| Tim44-like domain-contain protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011967|gb|EGH92023.1| Tim44-like domain-containing protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 280

 Score = 58.0 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 63/221 (28%), Gaps = 37/221 (16%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F IL+   I  F+  +      ++   ++P        Y             G      
Sbjct: 95  LFDILIMGLIA-FLIFRFIA---RRRQQQQPKMAAAGAPYQRESSQPAQNPIFGSSSPAS 150

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
               IN                      F+ + FL  AR  ++++   +   ++  I + 
Sbjct: 151 AAPVINAPA------------------WFNEERFLEAARGHFQSLQQHWDANEMDKIAEF 192

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V  ++ Q        R       +S+ +    +++       +    T+   G   S+ +
Sbjct: 193 VTPQMLQFLK---KERADLGDGFQSTYIDNLQVQLDGVDDRADKTIATLTFSGVSKSSRF 249

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D    + S            W   R    + P W++   + 
Sbjct: 250 D-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 278


>gi|222081641|ref|YP_002541006.1| hypothetical protein Arad_8042 [Agrobacterium radiobacter K84]
 gi|221726320|gb|ACM29409.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 331

 Score = 58.0 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 8/122 (6%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           +  ++       + +L          + L    +       + + +    I  +  E+N 
Sbjct: 211 VQSAYGAEDYATLRRLTTPEAMSYLAEELGENATKGVRNSVTDIRLLQGDIAESWREDNA 270

Query: 174 VYITI--RIVGQFISASYD-KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            Y T+  R     + A  D K   L+  D     +  +IWTF+R        W+L + + 
Sbjct: 271 EYATLAMRYSS--VDALLDRKTGRLVDGDDRNASETTEIWTFMRKPGSD---WILSAIQG 325

Query: 231 GE 232
            E
Sbjct: 326 TE 327


>gi|167901351|ref|ZP_02488556.1| Tim44-like domain protein [Burkholderia pseudomallei NCTC 13177]
          Length = 251

 Score = 58.0 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPF-----SGFFSGKYVFSKRDER 57
           F  M +   +I L A    ++  +       + G ++P           G   +S+    
Sbjct: 33  FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPALNRGHDGYSQDAGI 88

Query: 58  GIITLGKGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
                  G    +  +          G           +V   FD + FL  A+  +  +
Sbjct: 89  QRPAAPGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 148

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
             ++ EG +  I +     ++ +    L  R +     ++ +V + D +++         
Sbjct: 149 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 205

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
             ++R  G       +                 ++W   +     +  W+L   +  
Sbjct: 206 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 248


>gi|307726779|ref|YP_003909992.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
           CCGE1003]
 gi|307587304|gb|ADN60701.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
           CCGE1003]
          Length = 322

 Score = 58.0 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 24/227 (10%)

Query: 5   KMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK 64
           +M S    ++    +   +  +          N +     +        +          
Sbjct: 116 QMLSNML-LIGLVVVAGVMLFRF-------IANRRRPDLAYGHGAASRSQSNGMPFANQN 167

Query: 65  GKKKDNLDSINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKV 123
           G+ + +            +          V     D  + +  A++ +  +  ++   + 
Sbjct: 168 GQARPDSSFFGSQRTAANQTAAAGVFNAPVQPLGLDQAELVASAKSMFMRLQGAWDRNEQ 227

Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
             + +L    ++      L  R +     +   V   D +++      +  ++++R  GQ
Sbjct: 228 GDLFELTTPEMFAQLKRDLEGRGNQPNRTE---VPQLDAEVLGVESTADETFVSVRFYGQ 284

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                          D        ++W  VR+    N  W L   + 
Sbjct: 285 MR-----------EDDAPTAQPFQEVWNIVRSAHSGN-TWRLAGIQQ 319


>gi|218887945|ref|YP_002437266.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758899|gb|ACL09798.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 308

 Score = 58.0 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 71/218 (32%), Gaps = 27/218 (12%)

Query: 15  LFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSI 74
           L   +  F+ L+       + G+  P     SG+    +R+       G     D L + 
Sbjct: 117 LLLALVAFMALKFFA---ARRGS-APAPASASGQPGGMRREADYGAQSGSSAGWDALRNA 172

Query: 75  NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134
                     +  + +       FD ++FL  A+ +Y  +  S+    +  I +     +
Sbjct: 173 PAAAADAQPASPGIPE------GFDTEEFLRGAKLAYNRLQTSWDRRDLDDIAQFTTPEI 226

Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNL 194
                  ++ +   +     + V   +  +++ + E++    T+                
Sbjct: 227 L----KDITQQAQEDPGPSRTEVLYCNASVLSVTEEKDRSVATVFFDVLMRE-------- 274

Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
              +  +   +V ++W FVR     N  W L   +  E
Sbjct: 275 --DAQADAPSQVREVWHFVR---TGNEMWRLDGIQQVE 307


>gi|118782853|ref|XP_312541.3| AGAP002412-PA [Anopheles gambiae str. PEST]
 gi|116129764|gb|EAA08051.3| AGAP002412-PA [Anopheles gambiae str. PEST]
          Length = 335

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 75/199 (37%), Gaps = 21/199 (10%)

Query: 38  EKPF----SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93
           E+PF    +G     Y+  + D R      +G K+       E     T+    +R I +
Sbjct: 95  ERPFHISCTGGVFEPYIPPEGDGRMSAISREGAKQKI-----EQLEKKTKSMMAIRKIRN 149

Query: 94  VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153
              DF+P +F   A++ Y     +  E   + + ++V  R Y +   +++      K ++
Sbjct: 150 YDEDFEPPEFATLAQDIYIEAHKTLCEKNKYKLREIVTERAYPELMHNVAD-----KTIR 204

Query: 154 SSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
              +       +   +  +   +EN    +T+R   Q   A YD+   L+     +    
Sbjct: 205 WQFLKSLEPPRVVHARCTDVITKENIFAQVTVRFHSQQTLAIYDRFGRLMHGSETVAKDC 264

Query: 207 IDIWTFVRNIPPSNPNWVL 225
           I+   F +++      W L
Sbjct: 265 IEYVVFEKHLANEYGVWRL 283


>gi|56753329|gb|AAW24868.1| SJCHGC06217 protein [Schistosoma japonicum]
          Length = 326

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 78/218 (35%), Gaps = 29/218 (13%)

Query: 27  LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSI-------NELFP 79
           LR  L ++ G   P   +     +              G  + +L S        +EL  
Sbjct: 62  LRRRL-RRNGMLPPLLFYDRPINIGHTGQIFDPYVPPDGDGQTSLLSPKRLTHLKDELVD 120

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF-----EGKVHAIEKLVDSRV 134
            G     ++  I S    F  K F +EA N Y   +++             + +LV  + 
Sbjct: 121 KGKNYKDLLL-IRSHEPSFKSKPFASEAENIY---IEAHNLLQNYRQNESRLFELVTEKA 176

Query: 135 YQDFNDSLSTRKSNEKNVKSSLVG-IDDMKIINASIEE------NTVYITIRIVGQFISA 187
             D    L  R      ++   VG I+  K+++   +E      +   +T+R   Q I +
Sbjct: 177 LVDMTADLRLR-----TLRWKFVGNIEPPKVVHIRCKEYLSKGNHYAQVTVRFYTQQILS 231

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
            Y++   L+  +P+    V++   F ++I      W L
Sbjct: 232 IYNRFGRLLYGNPDTAVDVLEYVVFEKHISDEYGTWRL 269


>gi|262278111|ref|ZP_06055896.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258462|gb|EEY77195.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 329

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 63/206 (30%), Gaps = 22/206 (10%)

Query: 31  LGKK---TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL-DSINELFPIGTRLNK 86
           LG K    GN  P++    G+  F +           G   +    S+            
Sbjct: 141 LGAKKKLAGN-NPYAPNNGGQNPFGRSAAPQATPRNAGDNTNIFGQSVTGGAATQAPFGG 199

Query: 87  VMRDIVSVYTDFD-PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145
           V     +   D   P  FL  AR  +  I        +  I + +   +Y    + +   
Sbjct: 200 VTTSNGNQLPDGSEPAAFLRIARQRFNHIQSMNTASNIEEIRRYLTPELYTSMYNDIMEN 259

Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
           +  +    +    ++ M + +A+ E     +++R               +      +   
Sbjct: 260 QDQDV---AEFSNLNAMVVDSAN-ENGQYVVSVRF-----------TGNVSEDLNSLPQP 304

Query: 206 VIDIWTFVRNIPPSNPNWVLISTKLG 231
             +IW FV++      +WV+   +  
Sbjct: 305 FTEIWHFVKSAGSQQ-DWVVAGIQQA 329


>gi|189184596|ref|YP_001938381.1| hypothetical protein OTT_1689 [Orientia tsutsugamushi str. Ikeda]
 gi|189181367|dbj|BAG41147.1| hypothetical protein OTT_1689 [Orientia tsutsugamushi str. Ikeda]
          Length = 211

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 34/147 (23%)

Query: 88  MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
           +  + S    F+   F N A N  + I+++        I  L+D R    F         
Sbjct: 93  LIKLKSKVPSFNINRFYNTAINVIKMIIEAVQNANYKTIFSLLDKRFVDQF--------- 143

Query: 148 NEKNVKSSLVGI--DDMKIINASIE--ENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203
               + S  V I  D +    +++    N V+I IRI               I  +    
Sbjct: 144 --HQISSKYVNIHVDSINFKLSNLNSLGNNVFIKIRIE--------------IDGN---- 183

Query: 204 GKVIDIWTFVRNIPPSNPNWVLISTKL 230
            K+ + WTF +NI    P W L + + 
Sbjct: 184 -KLKEEWTFSKNITTPGPQWYLSNIEE 209


>gi|172087484|ref|XP_001913284.1| import inner membrane translocase subunit TIM44-like protein
           [Oikopleura dioica]
 gi|42601412|gb|AAS21436.1| import inner membrane translocase subunit TIM44-like protein
           [Oikopleura dioica]
          Length = 388

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 61/157 (38%), Gaps = 15/157 (9%)

Query: 85  NKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDFNDS 141
           N  ++ I  V   FD + F+    +  E I   +++     V  IE        Q F  +
Sbjct: 229 NDTIKAIRQVDKKFDQEAFVQFLES--EMIPIILEAKAINDVAVIEDWCLDAPAQRF--A 284

Query: 142 LSTRKSNEKNVKS--SLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199
           +  R+  +  +      + +  ++I++ ++ +N     I      + A  DKD  +I  +
Sbjct: 285 IKHREQAKNKITYYEKTINLQKLEILDGTVHDNMPAFQISFETNTLMAYTDKDGNVIEQE 344

Query: 200 ----PEIFGKVIDIWTFVRNIPPSNPN--WVLISTKL 230
               P+   K   +W+  R+     P+  W ++  + 
Sbjct: 345 GYPKPDEVYKSYHVWSVCRDPMEPEPSAAWRVLECET 381


>gi|91976179|ref|YP_568838.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris BisB5]
 gi|91682635|gb|ABE38937.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
           palustris BisB5]
          Length = 331

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 60/197 (30%), Gaps = 24/197 (12%)

Query: 38  EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
           ++  +   +  Y  +     G       +            P    L     +I      
Sbjct: 153 QRRKNPQPAPAYASNAGPTVGPGPEPSYRTGFGFGGGGGSAPNAPPL-----EIKPEDY- 206

Query: 98  FDPKDFLNEARNSYEAIVD----SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153
                       ++E ++     ++    V  + +L    +   F   L+  K+     K
Sbjct: 207 -----------EAFERLLGDVQSAWSNEDVEKLNQLTTPEMASYFAKDLAENKAANDINK 255

Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213
            S V +    +  +  E  T Y T+ +    +  + ++    + S  E   +V ++WTF 
Sbjct: 256 VSDVKLLQGDLAESWREGETDYATVAMRFSLVDKTLERGTNRLVSGSETPIEVTEVWTFA 315

Query: 214 RNIPPSNPNWVLISTKL 230
           R        W L + + 
Sbjct: 316 RRSGAD---WELSAIQQ 329


>gi|71033659|ref|XP_766471.1| mitochondrial import inner membrane translocase [Theileria parva
           strain Muguga]
 gi|68353428|gb|EAN34188.1| mitochondrial import inner membrane translocase, putative
           [Theileria parva]
          Length = 381

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 81  GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAIEKLVDSRVYQDFN 139
            T L   +R++  +   F+  D +    +     +V+S+ +G   A++       +   N
Sbjct: 224 DTSLASALREMKRLDPSFNLPDLVELVEHVIAPHVVESYLKGDGEALKLHCGEVAFNILN 283

Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINA-SIEENTVYITIRIVGQFISASYDKDNLLISS 198
            S+  R   +  +  S++ + ++++     ++E   ++      Q I+   D    + + 
Sbjct: 284 TSIKERNLQKLVLDPSILILKNVELKGGMKVKEGDPWLIFNFTTQQINCLRDTKGKVCAG 343

Query: 199 DPEIFGKV 206
             +   +V
Sbjct: 344 QIDDIREV 351


>gi|291557689|emb|CBL34806.1| Tim44-like domain [Eubacterium siraeum V10Sc8a]
          Length = 309

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 45/139 (32%), Gaps = 1/139 (0%)

Query: 81  GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
             R  ++   I     +F   D +   +  Y  I +++ +  +  +  ++   +Y     
Sbjct: 108 PNRTEQIEGIIKQKDPNFSASDLITFTKQVYIDIENAWCKRDMTPVRPVMHENLYNTTCK 167

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD-KDNLLISSD 199
            +  +           + ID   + +   +    Y+T  +  + I    D K   +I  D
Sbjct: 168 QVQAKIEQGVVYHYESIAIDTAYLTSYERDSQFEYVTAYLTSRMIDYQVDEKTGKIIRGD 227

Query: 200 PEIFGKVIDIWTFVRNIPP 218
                       FVR++  
Sbjct: 228 KTTRWVQKYKMKFVRSLGV 246


>gi|221068939|ref|ZP_03545044.1| import inner membrane translocase subunit Tim44 [Comamonas
           testosteroni KF-1]
 gi|220713962|gb|EED69330.1| import inner membrane translocase subunit Tim44 [Comamonas
           testosteroni KF-1]
          Length = 332

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 74/235 (31%), Gaps = 36/235 (15%)

Query: 15  LFAF-ITFFVFLQLRGVLGKK------TGNEKPFS----GFFSGKYVFSKRDERGIITLG 63
           L A  I   V + +R    ++        N  PF+    G   G     +  +     +G
Sbjct: 113 LLAMVIMVVVGMIMR----RRKPAPAMQSNHSPFAFQGAGNLGGDANAPQARQYNPEKVG 168

Query: 64  KGKKKDNLD--SINELFPI--GTRLNKVMR--DIVSVYTDFDPKDFLNEARNSYEAIVDS 117
                   +   I E      G+ +   +       V TDFD + FL  A+ ++  +  +
Sbjct: 169 NDASARPWEQNHIPEAAAAAGGSMIGSALSGSQNWGVPTDFDAEGFLTAAKRNFVTLQSA 228

Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKS--NEKNVKSSLVGIDDMKIINASIEENTVY 175
           +    +  +  ++   +  +    LS R+S    +   + ++ I D +++      N   
Sbjct: 229 WDRSDITTLRSMMTDEMLSEIRSQLSERESQRAGEPNHTDVLMI-DAQLLGIEDLGNGYM 287

Query: 176 ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            ++               ++            ++W   +        W++   + 
Sbjct: 288 ASVEFS-----------GMIREEASAGPSPFREVWNMTKP-KSGASGWLVAGVQA 330


>gi|330970256|gb|EGH70322.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 281

 Score = 58.0 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 68/221 (30%), Gaps = 36/221 (16%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F IL+   I  F+  +                     +    K    G     +   + 
Sbjct: 95  LFDILIMGLIA-FLIFR---------------FIARRRQQQQPKMAAAGAPPYQRETSQP 138

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
             + I      G+        +++    F+ + FL+ AR  ++++ + +   ++  I + 
Sbjct: 139 AQNPI-----FGSSSPASSAPVINAPAWFNEQRFLDAARGHFQSLQEHWDANEMDKIAEF 193

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V  ++ Q        R       +S+ +    +++       +    T+   G   ++ +
Sbjct: 194 VTPQMLQFLK---KERADLGDGFQSTFIENLQVQLDGVDDRADKTIATLTFSGVSKTSRF 250

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D    + S            W   R    + P W++   + 
Sbjct: 251 D-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 279


>gi|91781796|ref|YP_557002.1| hypothetical protein Bxe_A4049 [Burkholderia xenovorans LB400]
 gi|91685750|gb|ABE28950.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 330

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 16/166 (9%)

Query: 66  KKKDNLDSINELFPIGTRLNK-VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
            +     + + L P G  L+   +    +V   FD + FL  A+  +  +  ++  G   
Sbjct: 176 PRYTAPPTGSYLEPQGNPLSTPAINTAPAVPAGFDSEAFLRNAKVYFVRLQAAWDVGNTE 235

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
            I +     ++ +    LS+R +  +  ++ +V ++  +++      N  + ++R     
Sbjct: 236 DIREFTTPEMFAEVKVDLSSRGA--ETNQTDVVQLN-AELLGVEERANEYFASVRFS--- 289

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                    L+  +        +++W   +        W+L   + 
Sbjct: 290 --------GLIREAPGAAAEPFVEVWNLSKANRAGE-GWLLAGIQQ 326


>gi|330952408|gb|EGH52668.1| Tim44-like domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 280

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 65/221 (29%), Gaps = 37/221 (16%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F IL+   I  F+  +      ++   ++P        Y             G      
Sbjct: 95  LFDILIMGLIA-FLIFRFIA---RRRQQQQPKMAAAGAPYQRETSQPAQNPIFGSSSPAS 150

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
               IN                      F+ + FL+ AR  ++++   +   ++  I + 
Sbjct: 151 AAPVINAPA------------------WFNEQRFLDAARGHFQSLQQHWDANEMDKIAEF 192

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V  ++ Q        R       +S+ +   ++++       +    T+   G   ++ +
Sbjct: 193 VTPQMLQFLK---KERADLGDGFQSTYIENLNVQLDGVDDRADKTIATLTFSGVSKTSRF 249

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D    + S            W   R    + P W++   + 
Sbjct: 250 D-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 278


>gi|115920949|ref|XP_793386.2| PREDICTED: similar to MGC53772 protein [Strongylocentrotus
           purpuratus]
 gi|115935455|ref|XP_001189066.1| PREDICTED: similar to MGC53772 protein [Strongylocentrotus
           purpuratus]
          Length = 338

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 8/141 (5%)

Query: 89  RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY----QDFNDSLST 144
           R I     +F   DF  +A+  Y    ++  +   H +  LV  + Y      F      
Sbjct: 146 RKIRQFEPEFTTTDFAWKAQQIYVDAHNALQDFDRHLLHSLVTEKCYPEMIAGFRYKTIR 205

Query: 145 RKSNEKNVKSSLVGIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSDPEIF 203
            K  E   K  +V +    +IN   + N    +T+R   +   A YD+   ++    ++ 
Sbjct: 206 WKMLESIEKPRIVHMRCTDMIN---KGNIYGQVTVRFHTRQTLAIYDRFGRIMVGSEDVL 262

Query: 204 GKVIDIWTFVRNIPPSNPNWV 224
             V++   F +++P     W 
Sbjct: 263 KDVLEYVVFEKHLPHRYGTWR 283


>gi|330878142|gb|EGH12291.1| Tim44-like domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 281

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 67/221 (30%), Gaps = 36/221 (16%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F IL+   I  F+  +                     +    K    G     +   + 
Sbjct: 95  LFDILIMGLIA-FLIFR---------------FIARRRQQQQPKMAAAGAPPYQRETSQP 138

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
             + I       +        +++    F+ + FL+ AR  ++++   +   ++  I + 
Sbjct: 139 TQNPIFGSSSPASA-----APVINAPAWFNEERFLDAARGHFQSLQQHWDANEMDKIAEF 193

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V  ++ Q        R       +S+ +   ++++       +    T+   G   ++ +
Sbjct: 194 VTPQMLQFLK---KERADLGDGFQSTYIENLNVQLDGVDDRADKTIATLTFSGVSKTSRF 250

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D    + S            W   R    + P W++   + 
Sbjct: 251 D-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 279


>gi|307214389|gb|EFN89460.1| Probable 39S ribosomal protein L45, mitochondrial [Harpegnathos
           saltator]
          Length = 334

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 19/150 (12%)

Query: 87  VMRDIVSVYTDFDPKDFLNEA----RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
            +R I S    F    F+ EA    + +YEA+  +  EG+   ++  V    Y     ++
Sbjct: 139 AIRKIKSFDDMFKTSHFIEEAIDIYKKAYEAL--AAKEGEEKLLQ-YVTETAYPKMIHNM 195

Query: 143 STRKSNEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLL 195
                  K +    +       +  M+  +   +EN    IT+R   Q I A YD+   L
Sbjct: 196 MD-----KTIHWKFLESLEPARVVHMRTTDVITKENVFAQITVRFHTQQILAIYDRFGRL 250

Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
           I     +   V++   F +++      W +
Sbjct: 251 IQGSEILRKDVLEYIVFEKHLANEYGIWRI 280


>gi|195054150|ref|XP_001993989.1| GH22480 [Drosophila grimshawi]
 gi|193895859|gb|EDV94725.1| GH22480 [Drosophila grimshawi]
          Length = 353

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 78/209 (37%), Gaps = 21/209 (10%)

Query: 28  RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83
           RGV   +   E+PF    +G     YV  + D +  I    G K+       E     ++
Sbjct: 79  RGVFPPRPWMERPFHISCTGGIFEPYVPPEGDGKKSIITTSGAKQK-----FEFLEKKSK 133

Query: 84  LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
               +R I S    F   +F + A++ Y +        + + I + V  R Y +   ++ 
Sbjct: 134 SMLAVRKIRSYEESFSSDEFGSYAQDIYISAHTHMAAKEKYKIREFVTERCYPEMMHNVK 193

Query: 144 TRKSNEKNVKSSLV-GIDDMKIINAS------IEENTVYITIRIVGQFISASYDKDNLLI 196
                 K +    +  ++  ++++A        E     IT+R   Q + A YD+   L+
Sbjct: 194 D-----KTIHWRFLQSLEPPRLVHARCTEVITKENQFAQITVRFHTQQMLAIYDRFGRLM 248

Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
                +   V++   F ++I      W L
Sbjct: 249 HGSEILTKDVLEYVVFEKHISNEYGQWRL 277


>gi|229593438|ref|YP_002875557.1| hypothetical protein PFLU6076 [Pseudomonas fluorescens SBW25]
 gi|229365304|emb|CAY53654.1| putative exported protein [Pseudomonas fluorescens SBW25]
          Length = 289

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 71/221 (32%), Gaps = 34/221 (15%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F IL+ A I  F+  +              F      K           +     ++K 
Sbjct: 101 IFDILIMAVIA-FLVFR--------------FIAARRRKQQEHLAPAGAPMQREVFEQKP 145

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
            + SI      G+      R +++    F+ + F+  AR+ ++++   +   ++  I + 
Sbjct: 146 AMGSIFG----GSAAPAAARPVINAPAWFNEERFVEAARSHFQSLQQHWDANEMDKISEF 201

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V  ++ +        R       +S+ +    +++       +    T+   G   ++ +
Sbjct: 202 VTPQLLEFLKR---ERADLGDAFQSTYIDDLRVQLEGVDDRADKTIATLTFSGVSKTSRF 258

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D    + S            W   R    + P W++   + 
Sbjct: 259 D-QGEVFSES----------WNMERAQGDNQP-WLVAGIRQ 287


>gi|170691129|ref|ZP_02882295.1| import inner membrane translocase subunit Tim44 [Burkholderia
           graminis C4D1M]
 gi|170144378|gb|EDT12540.1| import inner membrane translocase subunit Tim44 [Burkholderia
           graminis C4D1M]
          Length = 324

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 66/230 (28%), Gaps = 28/230 (12%)

Query: 5   KMDSGD--FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
           +M S      +++ A +  F F+             +P   +  G    S+ +       
Sbjct: 116 QMLSNMLLIGLVVMAGVMLFRFI---------ANRRRPDLAYGQGAASRSQGNGSPFQHP 166

Query: 63  GKGKKKDNLDSI--NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
            +  +     +    +                S     D  + +  A+  +  +  ++  
Sbjct: 167 NQNGQARPDTNFFGTQRAATNPVAATGAFSAPSQPLGLDQAELVTSAKTMFMRLQRAWDA 226

Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
            +   + +L    ++      L  R S     +   V   D +++      N  ++++R 
Sbjct: 227 NEQGDLFELTTPEMFAQLKRDLEGRGSQPSRTE---VPQLDAEVLGVESTANETFVSVRF 283

Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            GQ               D        ++W  VR+    +  W L   + 
Sbjct: 284 YGQMR-----------EDDAPTAQPFQEVWNIVRSAHTGD-TWRLAGIQQ 321


>gi|313216757|emb|CBY38005.1| unnamed protein product [Oikopleura dioica]
 gi|313227382|emb|CBY22529.1| unnamed protein product [Oikopleura dioica]
          Length = 393

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 61/157 (38%), Gaps = 15/157 (9%)

Query: 85  NKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDFNDS 141
           N  ++ I  V   FD + F+    +  E I   +++     V  IE        Q F  +
Sbjct: 234 NDTIKAIRQVDKKFDQEAFVQFLES--EMIPIILEAKAINDVAVIEDWCLDAPAQRF--A 289

Query: 142 LSTRKSNEKNVKS--SLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199
           +  R+  +  +      + +  ++I++ ++ +N     I      + A  DKD  +I  +
Sbjct: 290 IKHREQAKNKITYYEKTINLQKLEILDGTVHDNMPAFQISFETNTLMAYTDKDGNVIEQE 349

Query: 200 ----PEIFGKVIDIWTFVRNIPPSNPN--WVLISTKL 230
               P+   K   +W+  R+     P+  W ++  + 
Sbjct: 350 GYPKPDEVYKSYHVWSVCRDPMEPEPSAAWRVLECET 386


>gi|46201583|ref|ZP_00054758.2| COG4395: Uncharacterized protein conserved in bacteria
           [Magnetospirillum magnetotacticum MS-1]
          Length = 343

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 54/156 (34%), Gaps = 12/156 (7%)

Query: 83  RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV----DSFFEGKVHAIEKLVDSRVYQDF 138
            +      +  +  +FDP       + ++  I+     ++ +G + ++++     V    
Sbjct: 194 PMISGAPPLARIEKEFDPS---GNDQEAFTEILLGVQQAWSDGNLLSLKRFATPEVVSFL 250

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT--IRIVGQFISASYDKDNLLI 196
           ++ +S   S     K   V +    +  +  E    Y+T  +           D    + 
Sbjct: 251 SEDMSRNASEGIANKVENVTLLKGDVSESWSEGGFDYLTAILTFSCNDYMVRLD-TGAVA 309

Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
             +P       + WTF+R+       W+L + +  +
Sbjct: 310 EGNPRATVTHTEAWTFMRSTNGG--RWLLSAVQQVQ 343


>gi|302191653|ref|NP_001180514.1| 39S ribosomal protein L45, mitochondrial [Gallus gallus]
          Length = 296

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 12/145 (8%)

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
            +R +     +F  K F   A+  Y    +S        +  LV  R Y D       R 
Sbjct: 120 ALRKVKDHDPNFSTKTFPEVAQEIYVEAHNSLANFNKQKLHSLVTERCYPDMV-----RG 174

Query: 147 SNEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSD 199
           +  K ++ S V       +  ++  +   + N    +T+R+  +   A YD+   L+   
Sbjct: 175 NRYKTIRWSFVESLEPPRVVHVRCTSVVNQGNLYGQVTVRMHTRQTLAIYDRFGRLMYGG 234

Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWV 224
            ++   V++   F R +      W 
Sbjct: 235 EKLPKDVLEYVVFERYLVNPYGTWR 259


>gi|330976327|gb|EGH76384.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 281

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 66/221 (29%), Gaps = 36/221 (16%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F IL+   I  F+  +                     +    K    G     +   + 
Sbjct: 95  LFDILIMGLIA-FLIFR---------------FIARRRQQQQPKMAAAGASPYQRETSQP 138

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
             + I       +        +++    F+ + FL+ AR  ++++   +   ++  I + 
Sbjct: 139 AQNPIFGSSSPAST-----APVINAPAWFNEQRFLDAARGHFQSLQQHWDANEMDKIAEF 193

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V  ++ Q        R       +S+ +    +++       +    T+   G   ++ +
Sbjct: 194 VTPQMLQFLK---KERADLGDGFQSTYIENLQVQLDGVDDRADKTIATLTFSGVSKTSRF 250

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D    + S            W   R    + P W++   + 
Sbjct: 251 D-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 279


>gi|104784399|ref|YP_610897.1| hypothetical protein PSEEN5505 [Pseudomonas entomophila L48]
 gi|95113386|emb|CAK18114.1| conserved hypothetical protein; putative signal peptide
           [Pseudomonas entomophila L48]
          Length = 281

 Score = 57.6 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 68/228 (29%), Gaps = 37/228 (16%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
           F  M   DF  LL   I  F+  +              F      +              
Sbjct: 89  FEGMQILDF--LLMGLIA-FLVFR--------------FIAARRRQQQPQHAAAGHAPYQ 131

Query: 63  GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
            + + +     I      G     V   +++    F+   FL  AR+ ++++   +   +
Sbjct: 132 REAQPQAAPQPI-----FGGSAAPVASPVINAPAWFNEASFLAAARSHFQSLQQHWDANE 186

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
           +  I + V  ++          R    +  +S+ +   D+++       +    T+   G
Sbjct: 187 MDKIAEFVTPQMLDFLKR---ERAEEGEGFQSTYIDDLDVQLEGVDDRADKTIATLTFRG 243

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
              ++ +D    +            + W   R    + P W+L   + 
Sbjct: 244 VSKTSRFD-QGEV----------FNESWHMERAQGENQP-WLLAGIRQ 279


>gi|306832127|ref|ZP_07465281.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425566|gb|EFM28684.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 274

 Score = 57.6 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 85  NKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST 144
            K +  I  V+ DFD  DF++  +  Y  + +++ +     +  L    +++  N  L  
Sbjct: 106 EKAIEAIKLVHPDFDEYDFISYTKELYLELQNAWMDKDWERVRHLETESLFRQHNMQLQE 165

Query: 145 RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIF 203
              N        V +D   I +  + ++   + + +         + D   LI  DP   
Sbjct: 166 YIDNHTTNHLDRVCVDRAIIKSFKMSDDHDVVKVILSSYMCDYIRNDDTGELIQGDPTEH 225

Query: 204 GKVIDIWTF---VRNIPPSNP--NWVL 225
              +    F     ++  SNP  +W L
Sbjct: 226 LYTVYNMEFIYEEDDVSDSNPYQHWKL 252


>gi|288906088|ref|YP_003431310.1| hypothetical protein GALLO_1899 [Streptococcus gallolyticus UCN34]
 gi|288732814|emb|CBI14390.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
          Length = 274

 Score = 57.6 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 85  NKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST 144
            K +  I  V+ DFD  DF++  +  Y  + +++ +     +  L    +++  N  L  
Sbjct: 106 EKAIEAIKLVHPDFDEYDFISYTKELYLELQNAWMDKDWERVRHLETESLFRQHNMQLQE 165

Query: 145 RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIF 203
              N        V +D   I +  + ++   + + +         + D   LI  DP   
Sbjct: 166 YIDNHTTNHLDRVCVDRAIIKSFKMSDDHDVVKVILSSYMCDYIRNDDTGELIQGDPTEH 225

Query: 204 GKVIDIWTF---VRNIPPSNP--NWVL 225
              +    F     ++  SNP  +W L
Sbjct: 226 LYTVYNMEFIYEEDDVSDSNPYQHWKL 252


>gi|291530805|emb|CBK96390.1| Tim44-like domain [Eubacterium siraeum 70/3]
          Length = 322

 Score = 57.6 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 45/139 (32%), Gaps = 1/139 (0%)

Query: 81  GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
             R  ++   I     +F   D +   +  Y  I +++ +  +  +  ++   +Y     
Sbjct: 121 PNRTEQIEGIIKQKDPNFSASDLITFTKQVYIDIENAWCKRDMTPVRPVMHENLYNTTCK 180

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD-KDNLLISSD 199
            +  +           + ID   + +   +    Y+T  +  + I    D K   +I  D
Sbjct: 181 QVQAKIEQGVIYHYESIAIDTAYLTSYERDSQFEYVTAYLTSRMIDYQVDEKTGKIIRGD 240

Query: 200 PEIFGKVIDIWTFVRNIPP 218
                       FVR++  
Sbjct: 241 KTTRWVQKYKMKFVRSLGV 259


>gi|146341888|ref|YP_001206936.1| putative signal peptide [Bradyrhizobium sp. ORS278]
 gi|146194694|emb|CAL78719.1| conserved hypothetical protein; putative signal peptide
           [Bradyrhizobium sp. ORS278]
          Length = 324

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 45/127 (35%), Gaps = 9/127 (7%)

Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164
            ++E     I  ++    V  +  L    +   F   L   ++     K + V +    +
Sbjct: 200 EAFERLLGEIQSAWSNEDVGRLRLLSTPEMASYFERDLEQNQARGVVNKVTGVKLLQGDL 259

Query: 165 INASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223
             +  E    Y T+ +       + ++    ++    +   +V +IWTF+R+       W
Sbjct: 260 AESWRENGADYATVAMRFTLADKTIERASGRVVEGS-DQPQEVTEIWTFLRHPGAD---W 315

Query: 224 VLISTKL 230
            L + + 
Sbjct: 316 QLSAIQQ 322


>gi|293603149|ref|ZP_06685582.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292818380|gb|EFF77428.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 252

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 71/220 (32%), Gaps = 20/220 (9%)

Query: 13  ILLFAFI-TF-FVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           +L+ A +    F+  +LRG  G +T  +  F+G  +      +   R  +          
Sbjct: 44  LLIAAVVFAVMFIIRRLRGA-GPRTATQGAFNGANNAPGQQQQPMWREALKPTAAAAPAA 102

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
             +   + P          +   V  DFD  +FL +A+  +  I   +  G    +   +
Sbjct: 103 AAAAAPVAPPAVLPKAGEDNNWFVPGDFDTPNFLKQAKEQFVRIQAVWDSGSTDGLRDFL 162

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              +  +    L+ R +     +  L+     +++      +    ++R  G        
Sbjct: 163 TDDLITELKPQLAERGAAPNKTEVVLLN---AEMLGIETVSDGHLASVRFSGMLR----- 214

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                  S      +  ++W       P+N  W+L   + 
Sbjct: 215 ------ESPGAEAFRFEEVWNL---FKPANGGWLLAGIQQ 245


>gi|167844353|ref|ZP_02469861.1| Tim44-like domain protein [Burkholderia pseudomallei B7210]
          Length = 258

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57
           F  M +   +I L A    ++  +       + G ++P           G   +S+    
Sbjct: 40  FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 95

Query: 58  GIITLGKGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
                  G    +  +          G           +V   FD + FL  A+  +  +
Sbjct: 96  QRQAAPGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 155

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
             ++ EG +  I +     ++ +    L  R +     ++ +V + D +++         
Sbjct: 156 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 212

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
             ++R  G       +                 ++W   +     +  W+L   +  
Sbjct: 213 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 255


>gi|91086739|ref|XP_971533.1| PREDICTED: similar to GA19976-PA [Tribolium castaneum]
 gi|270009728|gb|EFA06176.1| hypothetical protein TcasGA2_TC009023 [Tribolium castaneum]
          Length = 319

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 72/199 (36%), Gaps = 21/199 (10%)

Query: 38  EKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93
           EKPF    +G     YV  + D +      +G K+       +     ++    +R I  
Sbjct: 83  EKPFFISSTGGIFEPYVPPEGDGKISPIHMQGAKQKL-----QFLEKKSKTMMAIRKIRM 137

Query: 94  VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153
              DFD   F  EA N Y  + +   +     I   V  R Y    + +   ++    + 
Sbjct: 138 FEEDFDTTAFCKEAENIYVKMHELMAKKDWDNITDYVTERAY---PEVIHNVENK--TIH 192

Query: 154 SSLV-GIDDMKIINAS------IEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
             L+  I+  ++++A        E      T+R   Q + A YD+   L+     I   V
Sbjct: 193 WKLIKNIELPRVVHARCTDVITKENVFGQTTVRFHTQQMLAVYDRFGRLMHGSEIIAKDV 252

Query: 207 IDIWTFVRNIPPSNPNWVL 225
           ++   F +++      W +
Sbjct: 253 LEYIVFEKHLANVYGKWRI 271


>gi|126454670|ref|YP_001064966.1| Tim44-like domain-containing protein [Burkholderia pseudomallei
           1106a]
 gi|242315731|ref|ZP_04814747.1| Tim44 domain protein [Burkholderia pseudomallei 1106b]
 gi|126228312|gb|ABN91852.1| Tim44 domain protein [Burkholderia pseudomallei 1106a]
 gi|242138970|gb|EES25372.1| Tim44 domain protein [Burkholderia pseudomallei 1106b]
          Length = 323

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57
           F  M +   +I L A    ++  +       + G ++P           G   +S+    
Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 160

Query: 58  GIITLGKGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
                  G    +  +          G           +V   FD + FL  A+  +  +
Sbjct: 161 QRQAAPGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 220

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
             ++ EG +  I +     ++ +    L  R +     ++ +V + D +++         
Sbjct: 221 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 277

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
             ++R  G       +                 ++W   +     +  W+L   +  
Sbjct: 278 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 320


>gi|260829205|ref|XP_002609552.1| hypothetical protein BRAFLDRAFT_285685 [Branchiostoma floridae]
 gi|229294914|gb|EEN65562.1| hypothetical protein BRAFLDRAFT_285685 [Branchiostoma floridae]
          Length = 349

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 16/191 (8%)

Query: 42  SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPK 101
           +      Y+  + D R  +   +G  +                   +R I     +F  K
Sbjct: 86  TPEVMDPYIPPEGDGRQSVLSKEGAVQRLSS-----AKALATSQLSIRKIKEFDKEFSTK 140

Query: 102 DFLNEARNSYEAIVDS---FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKS---- 154
            F   A+  Y+   +    F     H + +LV  + Y D       R       +S    
Sbjct: 141 TFAGTAQEIYKEANNCLANFNTRNRHRLHQLVTEKCYPDMVRGFKFRTIRWTFQESVEPP 200

Query: 155 SLVGIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213
            +V +    +I+   + N    +T+R+  +   A YD+   L   D  +   V++   F 
Sbjct: 201 KVVHVRHNDLIS---KGNVYGQVTVRMHTRQTLAIYDRFGRLEFGDENLVKDVLEYVVFE 257

Query: 214 RNIPPSNPNWV 224
           R++     +W 
Sbjct: 258 RHLVNPYSSWR 268


>gi|254197071|ref|ZP_04903495.1| Tim44-like domain protein [Burkholderia pseudomallei S13]
 gi|169653814|gb|EDS86507.1| Tim44-like domain protein [Burkholderia pseudomallei S13]
          Length = 339

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57
           F  M +   +I L A    ++  +       + G ++P           G   +S+    
Sbjct: 121 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 176

Query: 58  GIITLGKGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
                  G    +  +          G           +V   FD + FL  A+  +  +
Sbjct: 177 QRQAAPGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 236

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
             ++ EG +  I +     ++ +    L  R +     ++ +V + D +++         
Sbjct: 237 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 293

Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
             ++R  G       +                 ++W   +     +  W+L   +  
Sbjct: 294 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 336


>gi|329906020|ref|ZP_08274321.1| putative membrane protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327547352|gb|EGF32182.1| putative membrane protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 209

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 71/226 (31%), Gaps = 23/226 (10%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGN-EKPFSGFFSGKYVFSKRDERGIITLGK 64
           M S   ++ L A   FF+      +  +KT +  KP                     +G 
Sbjct: 4   MISTLLMVGLLAAAAFFI----YRMFKRKTDDGSKPGYAGGYDAGSTDSSSRNYTPEIGS 59

Query: 65  GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
             +     +  +  P+ +        + +   DFD   FL  ++  +  +  ++ +  ++
Sbjct: 60  RIEPVAQPAALQSVPLTSGAAAAPFGVPA---DFDVPGFLRNSKTYFIRLQAAWDKADIN 116

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
            I +   S ++ +    +  R     +  ++ V   D +++           +++     
Sbjct: 117 DIREFTSSEMFAELRLQIQER---GASPNNTDVVKLDAELLGVETVGGDYLASVKFS--- 170

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                    ++  S+        + W   ++       W+L   + 
Sbjct: 171 --------GMIKESESAPAEPFAEAWNLSKS-TSGQGGWILAGIQQ 207


>gi|330964447|gb|EGH64707.1| Tim44-like domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 281

 Score = 57.2 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 65/221 (29%), Gaps = 37/221 (16%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F IL+   I  F+  +      ++   ++P        Y             G      
Sbjct: 96  LFDILIMGLIA-FLIFRFIA---RRRQQQQPKMAAAGAPYQRETSQPAQNPIFGSSSPAS 151

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
               IN                      F+ + FL+ AR  ++++   +   ++  I + 
Sbjct: 152 AAPVINAPA------------------WFNEERFLDAARGHFQSLQQHWDANEMDKIAEF 193

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V  ++ Q        R       +S+ +   ++++       +    T+   G   ++ +
Sbjct: 194 VTPQMLQFLK---KERADLGDGFQSTYIENLNVQLDGVDDRADKTIATLTFSGVSKTSRF 250

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D    + S            W   R    + P W++   + 
Sbjct: 251 D-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 279


>gi|50949925|emb|CAH10507.1| hypothetical protein [Homo sapiens]
          Length = 90

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 33/87 (37%)

Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNL 194
           Y      +   K+      S ++ ID++ +    + E    + I    Q +    +    
Sbjct: 1   YSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGE 60

Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNP 221
           ++  DP+   +++ +W   R+    NP
Sbjct: 61  VVEGDPDKVLRMLYVWALCRDQDELNP 87


>gi|329916047|ref|ZP_08276350.1| putative membrane protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327544779|gb|EGF30180.1| putative membrane protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 204

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/215 (10%), Positives = 61/215 (28%), Gaps = 25/215 (11%)

Query: 16  FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
                 F   ++           K  S     +  F+   + G+      +     D   
Sbjct: 13  LLAAAGFFIYRM----------FKRKSEQGGTQPAFAGAAKTGLTPDIGSRIDPATDYRF 62

Query: 76  ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
                G+      +    V  DFD   F+   +  +  +  ++    V+ I +     ++
Sbjct: 63  GSNSAGSATGNSAQAPWGVPADFDTTGFVRHTKTYFVRLQAAWDSANVNDIREFTTPEMF 122

Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
            +    +  R     +   + V   D +++   + ++    +++              ++
Sbjct: 123 AELRLQIQER---GPSDSHTDVVQLDAELLGMELVDDDHLASVKFS-----------GMI 168

Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             SD        ++W   +        WVL   + 
Sbjct: 169 KESDAAPAEPFTEVWNLSKP-RNGQGGWVLAGIQQ 202


>gi|157786676|ref|NP_001099304.1| 39S ribosomal protein L45, mitochondrial [Rattus norvegicus]
 gi|149054036|gb|EDM05853.1| mitochondrial ribosomal protein L45 (predicted) [Rattus norvegicus]
          Length = 306

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 55/148 (37%), Gaps = 12/148 (8%)

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
            +R I     +F  KDF  +A++ +              +  LV    + D        +
Sbjct: 121 AIRKIKEFDANFKTKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMV-----WE 175

Query: 147 SNEKNVKSSLV-GIDDMKIINASIEENT------VYITIRIVGQFISASYDKDNLLISSD 199
              K V+ S V  ++  ++++               +T+R+  +   A YD+   L+   
Sbjct: 176 LKYKTVRWSFVESLEPAQVVHVRSSGLVNQSNMYGQVTVRLHTRQTLAIYDRFGRLMYGQ 235

Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
            ++   V++   F R++     +W + +
Sbjct: 236 EDVPKDVLEYVVFERHLMNPYGSWRMHA 263


>gi|312089990|ref|XP_003146448.1| hypothetical protein LOAG_10876 [Loa loa]
 gi|307758388|gb|EFO17622.1| hypothetical protein LOAG_10876 [Loa loa]
          Length = 403

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 132 SRVYQDFNDSLSTRKSNE-KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
           S  Y   +  ++  K        S ++ ID ++++   + E+   I I      ++   +
Sbjct: 295 SEAYNILSTIVNEYKKVNFNTADSRVIDIDRVEMVTGKMMEHGPVIIITFQAYMVNVVRN 354

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTK 229
            +  ++  DP+   +V  +W   R++   NP   W ++   
Sbjct: 355 MEGKVVEGDPKSPVRVHHVWVMCRDMEEYNPAVAWKVLEVH 395


>gi|241661967|ref|YP_002980327.1| import inner membrane translocase subunit Tim44 [Ralstonia
           pickettii 12D]
 gi|240863994|gb|ACS61655.1| import inner membrane translocase subunit Tim44 [Ralstonia
           pickettii 12D]
          Length = 339

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/243 (11%), Positives = 70/243 (28%), Gaps = 40/243 (16%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKT-------------GNEKPFSGFFSGKYVFSKRDERGI 59
           ++L A + F V   +R V G +              G+ +P+    +     +       
Sbjct: 110 LILIALVAFVVMWIIRKVRGSRPQGPAYATGGPSLGGDREPYVPQPAAPAPQASAPAAAS 169

Query: 60  ITLGKGKKKDNL------------DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107
           +  G                     + +             +    V  DFD + FL  A
Sbjct: 170 LNTGNTSGLGAGAATAAQSWNLGGSAASAQAVNAQPAAAAPQQPWGVPADFDTQAFLRNA 229

Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167
           +  +  +  ++  G ++ I +     ++ +    L+ R     +   + V   + +++  
Sbjct: 230 KVYFIRLQAAWDAGNLNDIREFTTPEMFAEIKMDLADR---GTSPNKTDVVSVEAEMLGI 286

Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
             +      ++R              ++            ++W   +    +   WVL  
Sbjct: 287 ETQAAEYLASVRFS-----------GMIREEANAPAQPFAEVWNLTKPTQGAG-GWVLAG 334

Query: 228 TKL 230
            + 
Sbjct: 335 IQQ 337


>gi|325979053|ref|YP_004288769.1| hypothetical protein SGGBAA2069_c18530 [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325178981|emb|CBZ49025.1| hypothetical protein SGGBAA2069_c18530 [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 274

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 85  NKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST 144
            K +  I  V+ DFD  DF++  +  Y  + +++ +     +  L    +++  N  L  
Sbjct: 106 EKAIEAIKLVHPDFDEYDFISYTKELYLELQNAWMDKDWERVRHLETESLFRQHNMQLQE 165

Query: 145 RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIF 203
              N        V +D   I +  + ++   + + +         + D   LI  DP   
Sbjct: 166 YIDNHTTNHLDRVCVDQAIIKSFKMSDDHDVVKVILSSYMCDYIRNDDTGELIQGDPTEH 225

Query: 204 GKVIDIWTF---VRNIPPSNP--NWVL 225
              +    F     ++  SNP  +W L
Sbjct: 226 LYTVYNMEFIYEEDDVSDSNPYQHWKL 252


>gi|299769068|ref|YP_003731094.1| hypothetical protein AOLE_04120 [Acinetobacter sp. DR1]
 gi|298699156|gb|ADI89721.1| hypothetical protein AOLE_04120 [Acinetobacter sp. DR1]
          Length = 330

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 56/194 (28%), Gaps = 18/194 (9%)

Query: 40  PFSGFFSGKYVFSKRDERGIITLGKGKKKDNL-DSINELFPIGTRLNKVMRDIVSVYTDF 98
           P++    G+  F +           G   +    S+                  +   D 
Sbjct: 153 PYAPNNDGQNPFGRSAAPQATPRNAGDNTNIFGQSVGGGAATQAPFGGATTSNGNQLPDG 212

Query: 99  D-PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157
             P  FL  AR  +  I        +  I + +   +Y    + +   +  +    +   
Sbjct: 213 SEPAAFLRIARQRFNHIQSMNTASNIEEIRRYLTPELYSSMYNDIMENQDQDV---AEFS 269

Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217
            ++ M + +A+ E     +++R               +      +     +IW FV+   
Sbjct: 270 NLNAMVVDSAT-ENGQYVVSVRF-----------TGTVSEDLNSLPQPFTEIWHFVKPAG 317

Query: 218 PSNPNWVLISTKLG 231
               +WV+   +  
Sbjct: 318 SQQ-DWVVAGIQQA 330


>gi|89900086|ref|YP_522557.1| import inner membrane translocase subunit Tim44 [Rhodoferax
           ferrireducens T118]
 gi|89344823|gb|ABD69026.1| import inner membrane translocase, subunit Tim44 [Rhodoferax
           ferrireducens T118]
          Length = 318

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 78/245 (31%), Gaps = 34/245 (13%)

Query: 6   MDSGDFLILLFAFITFFV------FLQLRGVLG-KKTGNEKPFS------GFFSGKYVFS 52
           M      IL+FA +   +      F + R   G +     K            + +   S
Sbjct: 86  MGGAFGQILMFALLAMVIMMAVAWFKRSRS--GAQSQDTAKSPFAFQGAAPATAAQLPAS 143

Query: 53  KRDERGIITLGKGKKKDNLDSINE----LFPIGTRLNKVMRDIVS--VYTDFDPKDFLNE 106
            R E           + N  +           G+ +   +    S  V   FD + FL  
Sbjct: 144 YRPENVGNDASARPWERNSTAFEALKTTPAVAGSMIGSGLAGSQSWGVPDGFDAEGFLTS 203

Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN-EKNVKSSLVGIDDMKII 165
           A+ ++ ++  ++ +  ++A+  ++   + ++    L+ R+++    V  + V + + +++
Sbjct: 204 AKANFVSLQAAWDKSDINALRVMMTDTMLKEIQAQLAEREAHTGGPVNLTDVVMIEAQLL 263

Query: 166 NASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
                 +    ++               ++            ++W   +        W++
Sbjct: 264 GIEDTGDDYMASVEFS-----------GMIREEPSAGASPFREVWNMTK-TKSGKSGWLV 311

Query: 226 ISTKL 230
              + 
Sbjct: 312 AGVQA 316


>gi|171321552|ref|ZP_02910488.1| import inner membrane translocase subunit Tim44 [Burkholderia
           ambifaria MEX-5]
 gi|171093167|gb|EDT38379.1| import inner membrane translocase subunit Tim44 [Burkholderia
           ambifaria MEX-5]
          Length = 344

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 71/237 (29%), Gaps = 29/237 (12%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
           F  M +   +I L A I       +R  + ++   E  +S   S                
Sbjct: 124 FASMMANVIVIALLAMIG---IWLVRKFMNRRRSQEPAYSVGGSASSSGGYSQSPSFQQG 180

Query: 63  GKGKKKDNLDSINELFPIG---------TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
             G       S       G              +    + V   FD + FL  A+  +  
Sbjct: 181 STGNTYAGSGSSYANEAQGVFGGGAAAAGAAGAMAAAPLQVPAGFDTEAFLRSAKVYFVR 240

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           +  ++ +G +  I +     ++ +    L +R       ++ +V + D +++        
Sbjct: 241 LQAAWDQGNLADIREFTTPEMFAEIKIDLDSR--GNDANQTDVVQL-DAELVAIEDRGIE 297

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
              ++R  G  I  S +     +           ++W   +     +  W+L   + 
Sbjct: 298 QSASVRFHG-LIRESANAPAAPLD----------EVWNLSK---SGSQGWLLAGIQQ 340


>gi|187927437|ref|YP_001897924.1| import inner membrane translocase subunit Tim44 [Ralstonia
           pickettii 12J]
 gi|309779861|ref|ZP_07674616.1| Tim44 domain protein [Ralstonia sp. 5_7_47FAA]
 gi|187724327|gb|ACD25492.1| import inner membrane translocase subunit Tim44 [Ralstonia
           pickettii 12J]
 gi|308921438|gb|EFP67080.1| Tim44 domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 339

 Score = 56.8 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/243 (11%), Positives = 70/243 (28%), Gaps = 40/243 (16%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKT-------------GNEKPFSGFFSGKYVFSKRDERGI 59
           ++L A + F V   +R V G +              G+ +P+    +     +       
Sbjct: 110 LILIALVAFVVMWIIRKVRGSRPQGPAYATGGPSLGGDREPYVPQPAAPAPQASAPAAAS 169

Query: 60  ITLGKGKKKDNL------------DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107
           +  G                     + +             +    V  DFD + FL  A
Sbjct: 170 LNTGNTSGLGAGAATAAQSWNLGGSAASAQAVNAQPAAAAPQQPWGVPADFDTQAFLRNA 229

Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167
           +  +  +  ++  G ++ I +     ++ +    L+ R     +   + V   + +++  
Sbjct: 230 KVYFIRLQAAWDAGNLNDIREFTTPEMFAEIKMDLADR---GTSPNKTDVVSVEAEMLGI 286

Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
             +      ++R              ++            ++W   +    +   WVL  
Sbjct: 287 ETQAAEYLASVRFS-----------GMIREEANAPAQPFAEVWNLTKPTQGAG-GWVLAG 334

Query: 228 TKL 230
            + 
Sbjct: 335 IQQ 337


>gi|70733447|ref|YP_263222.1| hypothetical protein PFL_6164 [Pseudomonas fluorescens Pf-5]
 gi|68347746|gb|AAY95352.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 291

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 68/223 (30%), Gaps = 37/223 (16%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEK--PFSGFFSGKYVFSKRDERGIITLGKGKK 67
            F IL+ A I  FV  +      ++   E+  P       +  F  +   G    G    
Sbjct: 102 IFDILIMAVIA-FVIFRFIAAR-RRKQQEQYAPAGHAPMQREAFEPQQPAGGSIFGGSPA 159

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
                 IN                      F+ + F+  AR+ ++++   +   ++  I 
Sbjct: 160 PAARPVINAPA------------------WFNEERFIEAARSHFQSLQQHWDANEMDKIA 201

Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
           + V  ++ Q        R       +S+ +    +++       +    T+   G   ++
Sbjct: 202 EFVTPQMLQFLKQ---ERADLGDGFQSTYIDNLQVQLEGVDDRADKTIATLTFSGVSKTS 258

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            +D    + S            W   R    + P W++   + 
Sbjct: 259 RFD-QGEVFSES----------WNMERAQGDNQP-WLVAGIRQ 289


>gi|312963949|ref|ZP_07778420.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
           fluorescens WH6]
 gi|311281984|gb|EFQ60594.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
           fluorescens WH6]
          Length = 289

 Score = 56.8 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 70/221 (31%), Gaps = 34/221 (15%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F IL+ A I  F+  +              F      K           +     ++K 
Sbjct: 101 IFDILIMAVIA-FLVFR--------------FIAARRRKQQEHLAPAGAPMQREAFEQKP 145

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
            + SI      G+      R +++    F+ + F+  AR+ ++++   +   ++  I + 
Sbjct: 146 AMGSIFG----GSAAPAAARPVINAPAWFNEERFVEAARSHFQSLQQHWDANEMDKISEF 201

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V  ++ +        R       +S+ +    +++       +    T+   G   ++ +
Sbjct: 202 VTPQLLEFLKR---ERADLGDGFQSTYIDDLRVQLDGVDDRADKTIATLTFSGVSKTSRF 258

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D+                + W   R     +  W++   + 
Sbjct: 259 DQGEA-----------FSESWNMERAQG-DDQPWLVAGIRQ 287


>gi|78067527|ref|YP_370296.1| putative transporter [Burkholderia sp. 383]
 gi|77968272|gb|ABB09652.1| putative transporter [Burkholderia sp. 383]
          Length = 344

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 70/232 (30%), Gaps = 26/232 (11%)

Query: 8   SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
           S    +++ A +       +R  + ++   E  +S   S                G G  
Sbjct: 126 SMMANVIVIALLAAVGIWLIRKFMNRRRPQEPAYSVGGSASSSGGYSQSPSFQQGGTGSN 185

Query: 68  KDNLDSINELFPIG---------TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
                S       G                   + V   FD + FL  ++  +  +  ++
Sbjct: 186 YAGSGSSYANEAQGVFGGGAAATGAAAAAAAAPLQVPAGFDTEAFLRSSKVYFVRLQAAW 245

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
            +G +  I +     ++ +    L +R    ++ ++ +V + D +++           ++
Sbjct: 246 DQGNLADIREFTTPEMFAEIKIDLDSR--GNESNQTDVVQL-DAELVAIEDRGIEQSASV 302

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           R  G  I  S +                 ++W   +     +  W+L   + 
Sbjct: 303 RFHG-LIRESANASAAPFD----------EVWNLSK---SGSQGWLLAGIQQ 340


>gi|148235359|ref|NP_001079503.1| 39S ribosomal protein L45, mitochondrial precursor [Xenopus laevis]
 gi|29611839|sp|P59480|RM45_XENLA RecName: Full=39S ribosomal protein L45, mitochondrial;
           Short=L45mt; Short=MRP-L45; Flags: Precursor
 gi|27696384|gb|AAH43883.1| Mrlp45 protein [Xenopus laevis]
          Length = 309

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 65/194 (33%), Gaps = 14/194 (7%)

Query: 38  EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
           E+P +   +   +       G   L    K+  L    +           +R +    ++
Sbjct: 73  ERPINIACTAGILDPYVPPEGDARLSSLSKEG-LKQRTQQLKQTAASQLAIRKVKEYDSE 131

Query: 98  FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157
           F  K F  +A+  +            H +  LV  R Y +       R +  + ++ S V
Sbjct: 132 FTTKTFPEKAQEIFITAHKYLTNFDRHKLHTLVTERCYPEMV-----RGNRYRTIRWSFV 186

Query: 158 -GIDDMKIINAS-----IEENT-VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210
             I+  +++         + N    +T+R+  +     YD+   ++    E    V++  
Sbjct: 187 ESIEAPRVVQVRCPEMVSKGNLYAQVTVRMHNKQTLIVYDRFGRVMCGS-EEPRDVLEYV 245

Query: 211 TFVRNIPPSNPNWV 224
            F R++      W 
Sbjct: 246 VFERHMVNPYGTWR 259


>gi|217322864|ref|YP_002324754.1| hypothetical protein ABBFA_000841 [Acinetobacter baumannii
           AB307-0294]
 gi|213985735|gb|ACJ56034.1| hypothetical protein ABBFA_000841 [Acinetobacter baumannii
           AB307-0294]
          Length = 190

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 57/196 (29%), Gaps = 28/196 (14%)

Query: 36  GNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVY 95
           G + PF    +        +  G    G    +    S       G +L           
Sbjct: 23  GGQNPFGRSAAPTNTGDNTNIFGQSVGGGAATQAPFGSATTNS--GNQLPDGSE------ 74

Query: 96  TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155
               P  FL  AR  +  I        +  I + +   +Y    + +   +  +    + 
Sbjct: 75  ----PASFLRVARQRFNHIQSINSASNIEEIRRYLTPELYNSMYNDIMENQDQDV---AE 127

Query: 156 LVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRN 215
              ++ M + +A+ E     +++R               +      +     +IW FV+ 
Sbjct: 128 FSNLNAMVVDSAT-ENGQYIVSVRF-----------TGTVSEDLNSLPQPFTEIWHFVKP 175

Query: 216 IPPSNPNWVLISTKLG 231
           +     +WV+   +  
Sbjct: 176 VGSQQ-DWVVAGIQQA 190


>gi|154291697|ref|XP_001546429.1| hypothetical protein BC1G_15139 [Botryotinia fuckeliana B05.10]
 gi|150846639|gb|EDN21832.1| hypothetical protein BC1G_15139 [Botryotinia fuckeliana B05.10]
          Length = 166

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 12/134 (8%)

Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI---DDMK 163
           A   Y  +  +F  G +  + ++    + + F   +++R    + V  +LV +     + 
Sbjct: 23  AEALYREMYQNFAAGDIGRLRRMCADGLLESFAQRIASR-PRGQKVTWNLVKMNRRPKIM 81

Query: 164 IINASIEEN-----TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP 218
              A +             +RI  +      D     +    E    V++     +    
Sbjct: 82  STKAVMIPGGDGNVIRQAVVRISSRQKMTLRDNKGKELPGSTE--KDVVEYVVVQKIYRN 139

Query: 219 -SNPNWVLISTKLG 231
             +P W +  T  G
Sbjct: 140 WQDPEWQVWGTTRG 153


>gi|323529253|ref|YP_004231405.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
           CCGE1001]
 gi|323386255|gb|ADX58345.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
           CCGE1001]
          Length = 322

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 67/229 (29%), Gaps = 26/229 (11%)

Query: 4   IKMDSGD--FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61
            +M S      +++ A +  F F+             +P   +  G    S+ +    + 
Sbjct: 115 TQMLSNLLLIGLVVMAGVMLFRFI---------ANRRRPDLAYGHGAANRSQGNGSPFLN 165

Query: 62  LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
                + D+     +                      D  + +  A++ +  +  ++   
Sbjct: 166 QTGHARSDSHFFGTQRAATNPAGAAGAFSAPVQPLGVDQAELVVSAKSLFMRLQAAWDRN 225

Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
           +   + +L    ++      L  R S     +   V   + +++      +  ++++R  
Sbjct: 226 EQGDLFELTTPEMFAQLKRDLEDRGSQPNRTE---VPQLEAEVLGVQSTADETFVSVRFY 282

Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           GQ               D        ++W  VR+    +  W L   + 
Sbjct: 283 GQMR-----------EDDAPTAQPFQEVWNMVRSARGGDA-WRLAGIQQ 319


>gi|330818295|ref|YP_004362000.1| hypothetical protein bgla_1g34410 [Burkholderia gladioli BSR3]
 gi|327370688|gb|AEA62044.1| hypothetical protein bgla_1g34410 [Burkholderia gladioli BSR3]
          Length = 353

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 74/250 (29%), Gaps = 45/250 (18%)

Query: 3   FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
           F  M +   +I L AFI  ++  +L         N KP   +            RG    
Sbjct: 123 FASMMANVIVIALLAFIGIWIVRKLMN------RNRKPEPAYAGAGSSPGSSMNRGGYDA 176

Query: 63  GKGKKKDNLDSINELFPIGTRLNKVMR----------------------DIVSVYTDFDP 100
           G      + +      P     +                             SV   FD 
Sbjct: 177 GSNGGYASQNQAYAPAPSQPASSSSYANEAAGVFGGAAAAGAGLAAAGTAPSSVPAGFDS 236

Query: 101 KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160
           + F+  A+  +  +  ++ EG +  I +     ++ +    L++R +     ++ +V + 
Sbjct: 237 EAFVRNAKVYFIRLQAAWDEGNMTDIREFTTPEMFAEVKVDLASRGA--DKNQTDVVQL- 293

Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN 220
           + +++      N    ++R              L+  +         ++W         N
Sbjct: 294 EAELLGVEERGNQYEASVRF-----------HGLIREAPGASAEPFEEVWNL---TKAGN 339

Query: 221 PNWVLISTKL 230
             W+L   + 
Sbjct: 340 EGWLLAGIQQ 349


>gi|255320354|ref|ZP_05361538.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
 gi|255302549|gb|EET81782.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
          Length = 333

 Score = 56.4 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 66/232 (28%), Gaps = 41/232 (17%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEK--------------PFSGFFSGKYVFSKRDERG 58
           +LL A + FFVF        +K G +K              P    F       +  +  
Sbjct: 128 VLLAAAVAFFVF--------RKFGAKKKLATNNPYAPNSAGPNPSPFGQHNAAPRTQDNT 179

Query: 59  IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
            I            +     P GT      + +       +P  FL  AR  +  I    
Sbjct: 180 NIFGQSVGGSSTAANTANNAPFGTAYTNSGQQLPD---GTEPAAFLRIARQRFNHIQSMN 236

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
               +  I + +   +Y      +   +  +    +    ++   ++++  E     +++
Sbjct: 237 TASNIEEIRRYLTPELYNAMRSDIMANQDQDV---AEFSNLN-AMVVDSVTENGQYVVSV 292

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           R               +      +     + W FV+       +WV+   + 
Sbjct: 293 RF-----------TGTVSEDLNSLPQPFSETWHFVKPAGSQQ-DWVVAGIQQ 332


>gi|264676930|ref|YP_003276836.1| import inner membrane translocase, subunit [Comamonas testosteroni
           CNB-2]
 gi|262207442|gb|ACY31540.1| import inner membrane translocase, subunit [Comamonas testosteroni
           CNB-2]
          Length = 333

 Score = 56.0 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/197 (11%), Positives = 61/197 (30%), Gaps = 21/197 (10%)

Query: 42  SGFFSGKYVFSKRDERGIITLGKGKKKDNLD--SINELFPI--GTRLNKVMR--DIVSVY 95
           +G   G     +  +     +G        +   I E      G+ +   +       V 
Sbjct: 148 AGNLGGDVNAPQARQYNPEKVGNDASARPWEQNHIPEAAAAAGGSMIGSALSGSQNWGVP 207

Query: 96  TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS--NEKNVK 153
            DFD + FL  A+ ++  +  ++    +  +  ++   +  +    LS R+S    +   
Sbjct: 208 ADFDAEGFLTAAKRNFVTLQSAWDRSDITTLRSMMTDEMLAEIRSQLSERESQRAGEPNH 267

Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213
           + ++ I D +++      N    ++               ++            ++W   
Sbjct: 268 TDVLMI-DAQLLGIEDLGNGYMASVEFS-----------GMIREEASAGPSPFREVWNMT 315

Query: 214 RNIPPSNPNWVLISTKL 230
           +        W++   + 
Sbjct: 316 KP-KSGTSGWLVAGVQA 331


>gi|75676350|ref|YP_318771.1| hypothetical protein Nwi_2165 [Nitrobacter winogradskyi Nb-255]
 gi|74421220|gb|ABA05419.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 312

 Score = 56.0 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 5/118 (4%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I  ++ +  V+ +  L    +   F + L    +       S V +    +  A  E  T
Sbjct: 198 IQAAWSKEDVNTLHTLATPEMVSYFTEDLRANDARGVVNTVSDVKLLQGDLAEAWREGVT 257

Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            Y T+ +    I  + ++    ++    +   +  +IWTF R        W L + + 
Sbjct: 258 DYATVALRYSLIDKTTERASGRIVDG-GDQPQEAAEIWTFARRDGGK---WELSAIQQ 311


>gi|262379363|ref|ZP_06072519.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|262298820|gb|EEY86733.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 325

 Score = 56.0 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 66/232 (28%), Gaps = 41/232 (17%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEK--------------PFSGFFSGKYVFSKRDERG 58
           +LL A + FFVF        +K G +K              P    F       +  +  
Sbjct: 120 VLLAAAVAFFVF--------RKFGAKKKLATNNPYAPNSAGPNPSPFGQHNAAPRTQDNT 171

Query: 59  IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
            I            +     P GT      + +       +P  FL  AR  +  I    
Sbjct: 172 NIFGQSVGGSSTAANTANNAPFGTAYTNSGQQLPD---GTEPAAFLRIARQRFNHIQSMN 228

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
               +  I + +   +Y      +   +  +    +    ++   ++++  E     +++
Sbjct: 229 TASNIEEIRRYLTPELYNAMRSDIMANQDQDV---AEFSNLN-AMVVDSVTENGQYVVSV 284

Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           R               +      +     + W FV+       +WV+   + 
Sbjct: 285 RF-----------TGTVSEDLNSLPQPFSETWHFVKPAGSQQ-DWVVAGIQQ 324


>gi|157131210|ref|XP_001655824.1| mitochondrial ribosomal protein, L45, putative [Aedes aegypti]
 gi|108871608|gb|EAT35833.1| mitochondrial ribosomal protein, L45, putative [Aedes aegypti]
          Length = 334

 Score = 56.0 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 82/209 (39%), Gaps = 21/209 (10%)

Query: 28  RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83
           RG+L  +   E+PF    +G     YV  + D +      +G K+       EL    T+
Sbjct: 84  RGILPPRPWMERPFYISCTGGVFEPYVPPEGDGKMSAVSKEGAKQK-----FELLEKKTK 138

Query: 84  LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
               +R I S   DF+P +F  +A+  Y    +   E   + + +++  R Y +   +++
Sbjct: 139 SMMAVRKIRSFDDDFEPPEFAAQAQEIYIQAHNLLMEKNKYKLREIITERAYPEMMHNVT 198

Query: 144 TRKSNEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLI 196
                 K ++   +       +   +  +   ++N    +T+R   Q I A YD+   L+
Sbjct: 199 D-----KTIRWKFLKSLEPPRVVHARCTDVISKDNIFGQVTVRFHTQQILAIYDRFGRLM 253

Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
                +    ++   F +++      W L
Sbjct: 254 HGSEIVEKDCLEYVVFEKHLSNEYGVWRL 282


>gi|299531492|ref|ZP_07044898.1| import inner membrane translocase, subunit [Comamonas testosteroni
           S44]
 gi|298720455|gb|EFI61406.1| import inner membrane translocase, subunit [Comamonas testosteroni
           S44]
          Length = 325

 Score = 56.0 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/197 (11%), Positives = 61/197 (30%), Gaps = 21/197 (10%)

Query: 42  SGFFSGKYVFSKRDERGIITLGKGKKKDNLD--SINELFPI--GTRLNKVMR--DIVSVY 95
           +G   G     +  +     +G        +   I E      G+ +   +       V 
Sbjct: 140 AGNLGGDVNAPQARQYNPEKVGNDASARPWEQNHIPEAAAAAGGSMIGSALSGSQNWGVP 199

Query: 96  TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS--NEKNVK 153
            DFD + FL  A+ ++  +  ++    +  +  ++   +  +    LS R+S    +   
Sbjct: 200 ADFDAEGFLTAAKRNFVTLQSAWDRSDITTLRSMMTDEMLAEIRSQLSERESQRAGEPNH 259

Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213
           + ++ I D +++      N    ++               ++            ++W   
Sbjct: 260 TDVLMI-DAQLLGIEDLGNGYMASVEFS-----------GMIREEASAGPSPFREVWNMT 307

Query: 214 RNIPPSNPNWVLISTKL 230
           +        W++   + 
Sbjct: 308 KP-KSGTSGWLVAGVQA 323


>gi|17545178|ref|NP_518580.1| hypothetical protein RSc0459 [Ralstonia solanacearum GMI1000]
 gi|17427469|emb|CAD13987.1| hypothetical transmembrane protein [Ralstonia solanacearum GMI1000]
          Length = 356

 Score = 56.0 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 43/134 (32%), Gaps = 15/134 (11%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
           DFD + FL  A+  +  +  ++  G ++ I +     ++ +    L+ R         + 
Sbjct: 236 DFDTQAFLRNAKVYFVRLQAAWDAGNLNDIREFTTPEMFAEIKMDLTDR---GTVPNKTD 292

Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
           V   + +++           ++R              ++            ++W   +  
Sbjct: 293 VVSVEAELLGIETHPTEYLASVRFS-----------GMIREETSAPAQPFAEVWNLTKPT 341

Query: 217 PPSNPNWVLISTKL 230
             S   WVL   + 
Sbjct: 342 QGSG-GWVLAGIQQ 354


>gi|154247196|ref|YP_001418154.1| import inner membrane translocase subunit Tim44 [Xanthobacter
           autotrophicus Py2]
 gi|154161281|gb|ABS68497.1| import inner membrane translocase subunit Tim44 [Xanthobacter
           autotrophicus Py2]
          Length = 325

 Score = 55.7 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 15/135 (11%)

Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164
           +++E     I  +        +       ++    D L          + S V +    +
Sbjct: 194 DAFERLLGIIQGAVSREDQAELRANTTPEMFGYLADELRENAERGLRNQVSDVKLLQGDV 253

Query: 165 INASIEENTVYITI--RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222
             A  E N  Y T+  R   + +         ++S      G+  ++WTFVR+   + P 
Sbjct: 254 AEAWREGNREYATVAMRYASRDVMLDR-ASGKVVSGAA-GIGESTEVWTFVRD-RIAGPT 310

Query: 223 ------WVLISTKLG 231
                 W L + +  
Sbjct: 311 GGAAGLWRLSAIQGA 325


>gi|187922657|ref|YP_001894299.1| import inner membrane translocase subunit Tim44 [Burkholderia
           phytofirmans PsJN]
 gi|187713851|gb|ACD15075.1| import inner membrane translocase subunit Tim44 [Burkholderia
           phytofirmans PsJN]
          Length = 330

 Score = 55.7 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 62/193 (32%), Gaps = 23/193 (11%)

Query: 46  SGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK--------VMRDIVSVYTD 97
             +            +L  G    + +      P G+ L +         +     V   
Sbjct: 149 RKRDSAQPAYAGSSPSLNSGGTGYSQEPRYSAPPTGSYLEQQGNPLNTPTINAAPVVPAG 208

Query: 98  FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157
           FD + FL  A+  +  +  ++  G    I +     ++ +    LS+R +  +  ++ +V
Sbjct: 209 FDSEAFLRNAKVYFVRLQAAWDVGNTEDIREFTTPEMFAEVKVDLSSRGA--ETNQTDVV 266

Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217
            ++  +++      N  + ++R              L+  +        +++W   +   
Sbjct: 267 QLN-AELLGVEERANEYFASVRFS-----------GLIREAPGAAAEPFVEVWNLSK-AN 313

Query: 218 PSNPNWVLISTKL 230
                W+L   + 
Sbjct: 314 RPGEGWLLAGIQQ 326


>gi|260220358|emb|CBA27818.1| hypothetical protein Csp_A04170 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 319

 Score = 55.7 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 74/231 (32%), Gaps = 31/231 (13%)

Query: 14  LLFAFITFFVFLQLRGVLGKKTGNE--KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71
           LL   +   + + +R    +K   +   PF+   +G        +     +G        
Sbjct: 104 LLALGVMMLIGMFMRS---RKPAAQAASPFAFQGAGPAPVQDLKQYRAENVGNDASARPW 160

Query: 72  DSINELFPIGTRLNKVMRDIVSV---------YTDFDPKDFLNEARNSYEAIVDSFFEGK 122
           +  + +F       +    I S             FD + FL  A+ ++  +  ++    
Sbjct: 161 ERSSMVFEAPQPAAQGGSMIGSALMGSQTWGVPAGFDTEGFLKSAKANFVTLQAAWDRSD 220

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSN-EKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
           V A+  ++   + ++    L+ R+++    V  + V + D +++      +    ++   
Sbjct: 221 VAALRAMMTDDMTREIQTQLAERETHTGAGVNHTDVVMIDARLLGIEELPDEYMASVEFS 280

Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIW--TFVRNIPPSNPNWVLISTKL 230
                       ++            ++W  T  +N       W++   + 
Sbjct: 281 -----------GMIREEPSAGPSPFREVWNMTKAKNGSSG---WLVAGVQA 317


>gi|209880173|ref|XP_002141526.1| Tim44-like domain-containing protein [Cryptosporidium muris RN66]
 gi|209557132|gb|EEA07177.1| Tim44-like domain-containing protein [Cryptosporidium muris RN66]
          Length = 452

 Score = 55.7 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 48/139 (34%), Gaps = 14/139 (10%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNS-YEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T     ++++  V   F+  +F+          I+D++  G    +        Y   + 
Sbjct: 279 TEFALAIKEMRKVDPTFNTVEFIETVETVIIPHIIDAYLVGNDDVLRLHCGITAYAALSA 338

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINA------SIEENTVY-------ITIRIVGQFISA 187
           S   R+S +  +  +L+ I ++ +  A      S + N                 Q I+ 
Sbjct: 339 SCKERRSMKLKLDPTLLLIRNVDLKGAKRWNVNSNDSNEYNNFNSYPWFIFTFSTQQINC 398

Query: 188 SYDKDNLLISSDPEIFGKV 206
             D +  ++S   +   +V
Sbjct: 399 LRDYEGKVVSGSVDDIREV 417


>gi|311103718|ref|YP_003976571.1| Tim44-like domain-containing protein [Achromobacter xylosoxidans
           A8]
 gi|310758407|gb|ADP13856.1| Tim44-like domain protein [Achromobacter xylosoxidans A8]
          Length = 334

 Score = 55.7 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 72/220 (32%), Gaps = 20/220 (9%)

Query: 13  ILLFAFI-TF-FVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
           +L+ A +    F+  +LRG  G +T  +  F+G  +      +   R  +          
Sbjct: 126 LLIAAVVFAVMFIIRRLRGA-GPRTATQGAFNGSNNTPGQQQQPMWRESLKPAAPAAAAA 184

Query: 71  LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
           + +                +   V  DFD  +FL +A++ +  I   +  G    + + +
Sbjct: 185 VAAPVAAAAPAAMPKAGDDNNWFVPGDFDTPNFLKQAKDQFVRIQAVWDSGSTDGLREFL 244

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
              +  +    L+ R +     +  L+     +++      +    ++R  G        
Sbjct: 245 TDDLITELKPQLAERGAAPNKTEVVLLN---AEMLGIETVSDGHLASVRFSGMLR----- 296

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                  +      +  ++W       P+N  W+L   + 
Sbjct: 297 ------EAPGAEAFRFEEVWNL---FKPANGGWLLAGIQQ 327


>gi|296476478|gb|DAA18593.1| 39S ribosomal protein L45, mitochondrial precursor [Bos taurus]
          Length = 306

 Score = 55.3 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 55/144 (38%), Gaps = 12/144 (8%)

Query: 88  MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
           +R I     +F  KDF  +A++ +              +  LV    + D    +     
Sbjct: 122 IRRIKESDPNFKVKDFPEKAQDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIK---- 177

Query: 148 NEKNVKSSLV-GIDDMKIINAS----IEENTV--YITIRIVGQFISASYDKDNLLISSDP 200
             K V+ S V  ++  +++       + ++     +T+R+  +   A YD+   L+    
Sbjct: 178 -YKTVRWSFVESLEPPQVVQVRCSSLVTKSNAYGQVTVRMHTRQTLAIYDRFGRLMYGQE 236

Query: 201 EIFGKVIDIWTFVRNIPPSNPNWV 224
           ++   V++   F +++     +W 
Sbjct: 237 DVPRDVLEYVVFEKHLANPYGSWR 260


>gi|310821532|ref|YP_003953890.1| hypothetical protein STAUR_4283 [Stigmatella aurantiaca DW4/3-1]
 gi|309394604|gb|ADO72063.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 637

 Score = 55.3 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 54/143 (37%), Gaps = 4/143 (2%)

Query: 81  GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
              + + ++ +      F+ +  L + R+ +  + +++F+ ++  +   +    YQ FN 
Sbjct: 114 DQSVQEWVQALKRKDPQFEVQGVLAKVRHLFPLLQEAWFKRELTPVRPFLSDATYQRFNV 173

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS----ASYDKDNLLI 196
            L    +         + + D +II  S  E    + IRI  +       A       L 
Sbjct: 174 QLQLMAAQGVRDAICDIRLLDARIIGLSQSEWFDSLQIRIQAEMRDTDVPADASDAQALA 233

Query: 197 SSDPEIFGKVIDIWTFVRNIPPS 219
           ++         ++WTFVR    +
Sbjct: 234 AAQRAPLESFTEVWTFVRKPGAT 256


>gi|302686218|ref|XP_003032789.1| hypothetical protein SCHCODRAFT_54972 [Schizophyllum commune H4-8]
 gi|300106483|gb|EFI97886.1| hypothetical protein SCHCODRAFT_54972 [Schizophyllum commune H4-8]
          Length = 485

 Score = 55.3 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 57/172 (33%), Gaps = 10/172 (5%)

Query: 38  EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
           E P    F          E  +++  +           E     T   +V+R + ++   
Sbjct: 260 ENPVLRSFVSMRQAYDESENPVVSTMRSVTSTIGSWFEE-----TEQAQVLRMMKAIDPT 314

Query: 98  FDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155
           FD + F  E R  Y    +VD++      A++       Y     ++          +S 
Sbjct: 315 FDREQFERELRE-YIVPEVVDAYLSADQKALKDWCSEATYNVLWATMEHYLKQGLVSESK 373

Query: 156 LVGIDDMKIINASIEENTVYI-TIRIVGQFISASYD-KDNLLISSDPEIFGK 205
           ++ I  + I +  I +N + +  ++   Q +    + K   +     +   +
Sbjct: 374 VLDIRQVDISDGKILDNDIPVYLVQFATQEVLLFRNIKTGEVAVGAEDKVEQ 425


>gi|237801765|ref|ZP_04590226.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|237806703|ref|ZP_04593407.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331024624|gb|EGI04680.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331027817|gb|EGI07872.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 280

 Score = 55.3 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 65/221 (29%), Gaps = 37/221 (16%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F IL+   I  F+  +      ++   ++P        Y             G      
Sbjct: 95  LFDILIMGLIA-FLIFRFIA---RRRQQQQPKMAPAGAPYQRETSQPTQNPIFGSSSPAS 150

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
              +IN                      F+ + FL  AR  ++++   +   ++  I + 
Sbjct: 151 APPAINAPA------------------WFNEERFLEAARGHFQSLQQHWDANEMDKIAEF 192

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V  ++ Q        R       +S+ +   ++++       +    T+   G   ++ +
Sbjct: 193 VTPQMLQFLK---KERADLGDGFQSTYIENLNVQLDGVDDRADKTIATLTFSGVSKTSRF 249

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D    + S            W   R +   N  W++   + 
Sbjct: 250 D-QGEVFSES----------WNMER-LQGDNQPWLVAGIRQ 278


>gi|303256401|ref|ZP_07342415.1| Tim44 domain protein [Burkholderiales bacterium 1_1_47]
 gi|302859892|gb|EFL82969.1| Tim44 domain protein [Burkholderiales bacterium 1_1_47]
          Length = 327

 Score = 55.3 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/190 (9%), Positives = 59/190 (31%), Gaps = 24/190 (12%)

Query: 42  SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPK 101
           + F   +   + R++         +    +D  ++     +              DF+ +
Sbjct: 162 ADFGQSRSEAAVREQPAFNPAQAVRPGSAMDQFSDEPAAASESTYG------APADFNQE 215

Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDD 161
           +FLN +   ++ +  ++  G +  +       ++ +       R+    N+ + +V ++ 
Sbjct: 216 EFLNMSTAYFKMLQKAWDSGDMDDLANYTTDDLFIELTH--KRREIKGVNL-TEIVNLN- 271

Query: 162 MKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP 221
             +            ++   G        ++            ++ +IW  V+       
Sbjct: 272 ASLAGFETTPTEYVASVLFTGSL-----KENGEP--------TEIKEIWNLVKP-KEGKT 317

Query: 222 NWVLISTKLG 231
            W+L   +  
Sbjct: 318 GWLLAGIQQA 327


>gi|171059204|ref|YP_001791553.1| import inner membrane translocase subunit Tim44 [Leptothrix
           cholodnii SP-6]
 gi|170776649|gb|ACB34788.1| import inner membrane translocase subunit Tim44 [Leptothrix
           cholodnii SP-6]
          Length = 333

 Score = 54.9 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 59/186 (31%), Gaps = 19/186 (10%)

Query: 47  GKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNE 106
              +     + G      G+  ++    +   P    +        ++  DFD   F   
Sbjct: 163 PAAMQRSNAQEGSAAASFGQAGNSAGFNSASAPAFEPIGAAPTAAANLPADFDQAGFERI 222

Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN 166
           A+  +  +  +   G ++ +       ++      L  R +  +      V     ++++
Sbjct: 223 AKMIFIRMQAANDSGDLNDLRSFTTPEMFAHIRLELQERGNAPQTTDVVDVA---AEVLD 279

Query: 167 ASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV--RNIPPSNPNWV 224
            + + +   +++R  GQ      +     ++S         +IW  V  R+      NW 
Sbjct: 280 LTRDTDRDIVSVRYHGQI----REAAGAPVTS-------FDEIWHLVQPRD-GSR--NWA 325

Query: 225 LISTKL 230
           +   + 
Sbjct: 326 ISGIQQ 331


>gi|218672995|ref|ZP_03522664.1| putative transmembrane TIM family protein [Rhizobium etli GR56]
          Length = 113

 Score = 54.9 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 6/113 (5%)

Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI--R 179
               + +L          + L    +N    + S V +    I  A  E+   Y T+  R
Sbjct: 1   DYGTLRRLTTPEAMSYLAEELGENATNGVRNRVSDVKLLQGDIAEAWREDGQEYATLAMR 60

Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
                     D    ++S D     +  ++WTFVR        W L + +  E
Sbjct: 61  YSSIDAMVERDS-GRVVSGDDRQPSESTEVWTFVRKSGAD---WKLAAIQGTE 109


>gi|255542538|ref|XP_002512332.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548293|gb|EEF49784.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 619

 Score = 54.9 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 45/120 (37%), Gaps = 9/120 (7%)

Query: 92  VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151
               + +       EA   Y+ I      G  +++ K V  ++Y +  + +  R+S    
Sbjct: 153 KLRKSGYSKHQLYKEAIELYKEISTMIANGDKNSLRKAVTEKMYSELKNEIKQRESMWSK 212

Query: 152 VKSSLVG-IDDMKIINASIEENTV--------YITIRIVGQFISASYDKDNLLISSDPEI 202
           V   LV  +  ++ + A +              +T+ ++ +    +YD  + +++ D   
Sbjct: 213 VYWELVEPVIKIRTLRARLIGVDRSDFSKVFIQLTLELLTKQKFEAYDSKDTVVAGDKTK 272


>gi|331001471|ref|ZP_08325089.1| Tim44-like domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|329568200|gb|EGG50017.1| Tim44-like domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 310

 Score = 54.9 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/190 (9%), Positives = 59/190 (31%), Gaps = 24/190 (12%)

Query: 42  SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPK 101
           + F   +   + R++         +    +D  ++     +              DF+ +
Sbjct: 145 ADFGQSRSEAAVREQPAFNPAQAVRPGSAMDQFSDEPAAASESTYG------APADFNQE 198

Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDD 161
           +FLN +   ++ +  ++  G +  +       ++ +       R+    N+ + +V ++ 
Sbjct: 199 EFLNMSTAYFKMLQKAWDSGDMDDLANYTTDDLFIELTH--KRREIKGANL-TEIVNLN- 254

Query: 162 MKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP 221
             +            ++   G        ++            ++ +IW  V+       
Sbjct: 255 ASLAGFETTPTEYVASVLFTGSL-----KENGEP--------TEIKEIWNLVKP-KEGKT 300

Query: 222 NWVLISTKLG 231
            W+L   +  
Sbjct: 301 GWLLAGIQQA 310


>gi|241999542|ref|XP_002434414.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215497744|gb|EEC07238.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 333

 Score = 54.9 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 68/200 (34%), Gaps = 17/200 (8%)

Query: 34  KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93
           +   E+P     SG          G   +    ++  +  +  L   G  +  V R I S
Sbjct: 86  RVWMERPIYTSCSGGLFDPYVPPEGDGKMSLLSQEGAMQRMRRLEKKGRSVMNV-RKIRS 144

Query: 94  VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153
              DF   +F  +A+  Y  +  +  E     + +LV    Y +   ++       K ++
Sbjct: 145 YEDDFHLAEFAEQAQQIYIDVHRALAEKNKDKLHELVTENCYPELMQNVV-----NKTLR 199

Query: 154 SSLVGIDDMKIINA---------SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFG 204
                I  ++   A         S +     +T+R+  Q   A YD+   L+     +  
Sbjct: 200 WQF--IKSLEPPRAVHVRCEDLISKDNMFGQVTVRMHTQQTLAVYDRFGRLMHGSEVMAK 257

Query: 205 KVIDIWTFVRNIPPSNPNWV 224
            V++   F +++      W 
Sbjct: 258 DVLEYVVFEKHLSDLYGTWR 277


>gi|262283507|ref|ZP_06061273.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
 gi|262260998|gb|EEY79698.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
          Length = 310

 Score = 54.9 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 47/131 (35%), Gaps = 7/131 (5%)

Query: 86  KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145
           + +R +     +FD + FL++ +  Y  +  ++ E    ++  L    +Y   +  L   
Sbjct: 117 EAIRQLKQQDPNFDEERFLSQVKVIYLRLQSAWTEKDWASVRGLESPSLYDQHSTQLQEH 176

Query: 146 KSNEKNVKSSLVGIDDMKIINASIEE-NTVYITIRIVGQFISASYDKD-NLLISSDPEIF 203
              +       V +++ KI +          + + +         D +   +I  DP   
Sbjct: 177 IRAKTTNVLERVRVENSKIKDFYPNPQGHDRLEVILSSTMRDYIRDDETGRIIEGDP--- 233

Query: 204 GKVIDIWTFVR 214
               D++T  R
Sbjct: 234 --TKDLFTVYR 242


>gi|84998204|ref|XP_953823.1| mitochondrial inner membrane subunit [Theileria annulata]
 gi|65304820|emb|CAI73145.1| mitochondrial inner membrane subunit, putative [Theileria annulata]
          Length = 395

 Score = 54.9 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 81  GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAIEKLVDSRVYQDFN 139
            T L   +R++  +   F+  D +    +     +V+S+ +G   A++       +   N
Sbjct: 223 DTSLASALREMKRLDPSFNLPDLVELVEHVIAPHVVESYLKGDGEALKLHCGEVAFNILN 282

Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINA-SIEENTVYITIRIVGQFISASYDKDNLLISS 198
            S+  R   +  +  S++ + ++++     ++E   ++      Q I+   D    + + 
Sbjct: 283 TSIKERNLQKLVLDPSILILKNVELKGGMKVKEGDPWLIFNFTTQQINCLRDTKGKVCAG 342

Query: 199 DPEIF 203
           + ++ 
Sbjct: 343 NCDVI 347


>gi|332525837|ref|ZP_08401978.1| import inner membrane translocase subunit Tim44 [Rubrivivax
           benzoatilyticus JA2]
 gi|332109388|gb|EGJ10311.1| import inner membrane translocase subunit Tim44 [Rubrivivax
           benzoatilyticus JA2]
          Length = 321

 Score = 54.9 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 67/223 (30%), Gaps = 22/223 (9%)

Query: 11  FLILLFAFITFFVF-LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
             I L A + FFV    LR     + G     +   +G                      
Sbjct: 113 LTIALLAVVAFFVIRFLLR-----RFGPRPAAAPAAAGVGALRTGPADWTPPPAPVSPTP 167

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVY--TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
                +             R +   +    FD + F   A+  +  +  +     +  + 
Sbjct: 168 VTPVPSAAPVAADAPVAAERTLAPAFVPAAFDSESFERVAKTIFVRLQAANDSADLDDLR 227

Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
           +     ++ +    L  R     + +++ V   + K+++ + E+    +++R VG+    
Sbjct: 228 RFTTPEMFAELKMDLQDR---GSSTQTTDVVEVEAKVVDVAEEDGRQIVSVRYVGR---- 280

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             ++                ++W  V+ +   +  W +   + 
Sbjct: 281 VREEAGA-------EPVAFDEVWHLVKPVGDDSRGWAIAGIEQ 316


>gi|91786763|ref|YP_547715.1| import inner membrane translocase subunit Tim44 [Polaromonas sp.
           JS666]
 gi|91695988|gb|ABE42817.1| import inner membrane translocase, subunit Tim44 [Polaromonas sp.
           JS666]
          Length = 333

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/207 (10%), Positives = 67/207 (32%), Gaps = 29/207 (14%)

Query: 38  EKPFSGFFSGKYVFSKRDERGIITLGKGKKK--------DNLDSINELFPIGTRLNKVM- 88
           ++PF+   +G     +      +      +         D           G+ +   + 
Sbjct: 140 QEPFAFQGAGNAATPRNYSPENVGNDASARPWERSGMAFDANRDAGATPATGSMIGSALL 199

Query: 89  -RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
                 V   FD + FL  ++ ++  + D++    + ++  ++   + +     L+ R+S
Sbjct: 200 GTQTWGVPAGFDAEGFLKASKANFVTLQDAWDRSDIQSLRAMMTDDMLEQIKAQLADRES 259

Query: 148 N--EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
           +      ++ +V ++  +++      +T   ++               ++          
Sbjct: 260 HTGGVVNRTEVVMLN-AQLLGIEELSDTYMASVEFS-----------GMIREDASAGASP 307

Query: 206 VIDIW--TFVRNIPPSNPNWVLISTKL 230
             ++W  T  RN       W++   + 
Sbjct: 308 FREVWNMTKPRNGGSG---WLVAGVQA 331


>gi|240849189|ref|NP_001155742.1| 39S ribosomal protein L45, mitochondrial [Acyrthosiphon pisum]
 gi|239789330|dbj|BAH71295.1| ACYPI008057 [Acyrthosiphon pisum]
          Length = 330

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 70/206 (33%), Gaps = 24/206 (11%)

Query: 33  KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIV 92
            +   E+      +G  +       G   +           I EL        + +R I 
Sbjct: 89  TRPWIERTTFINNTGSIIEPYVPPEGDGKISPISTAGAKQKI-ELLKKKKDTWQAIRKIR 147

Query: 93  SVYTDFDP-KDFLNEARNSY-----EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
               +F+   +F+ +A++ Y       +           + + V  + Y +   ++    
Sbjct: 148 QNEEEFELYPEFITKAQDIYLKAHTTMVNK-----DKQNLLQYVTEKAYVEMLHNID--- 199

Query: 147 SNEKNVKSSLV-GIDDMKIINASI------EENTVYITIRIVGQFISASYDKDNLLISSD 199
              K ++ S +  I+  ++++A +      +     IT+R   +   + +D+   LI   
Sbjct: 200 --NKTLRWSFIKSIEPPRVVHARVTDIITQDNLFAQITVRFHTKQTLSVFDRFGRLIFGS 257

Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWVL 225
             +   V++   F ++I      W +
Sbjct: 258 DVVAKDVLEYVVFEKHIVNQYGMWRI 283


>gi|325690393|gb|EGD32397.1| hypothetical protein HMPREF9382_1351 [Streptococcus sanguinis
           SK115]
          Length = 237

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 45/120 (37%), Gaps = 2/120 (1%)

Query: 85  NKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST 144
            + +R++  +   FD + FL++A+  Y  +  ++ E    ++  L    +Y+     L  
Sbjct: 43  QEAIRELKRLDPYFDEESFLSQAKAVYLHLQSAWTEKDWASVRNLESPSLYEQHRTQLQE 102

Query: 145 RKSNEKNVKSSLVGIDDMKIIN-ASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEI 202
               +       V ++D KI +     +    + + +         D +   +I  DP  
Sbjct: 103 HIRAKTTNVLERVCVEDSKIKDFYPNSQGHDRLEVILSSTMRDYIKDDETGRIIEGDPTK 162


>gi|307184938|gb|EFN71203.1| Probable 39S ribosomal protein L45, mitochondrial [Camponotus
           floridanus]
          Length = 201

 Score = 54.5 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 12/130 (9%)

Query: 103 FLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV-GIDD 161
           FL EA   Y+   ++    K   + K V    Y     +L       K +    +  ++ 
Sbjct: 20  FLEEATEIYQKAHEALAAKKKGMLIKYVTESAYPKMIHNLMD-----KTIHWKFLESLEP 74

Query: 162 MKIINASI------EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRN 215
            ++++A        E     +T+R   Q I A YD+   LI     +   V++   F ++
Sbjct: 75  ARVVHARTTDVITKENVFAQLTVRFHTQQILAVYDRFGRLIQGSEILRKDVLEYIVFEKH 134

Query: 216 IPPSNPNWVL 225
           +      W +
Sbjct: 135 LANEYGAWRI 144


>gi|327275540|ref|XP_003222531.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like [Anolis
           carolinensis]
          Length = 316

 Score = 54.1 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 61/153 (39%), Gaps = 26/153 (16%)

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYEAIVDS------FFEGKVHAI-EKLVDSRVYQDFN 139
            +R I     DF  K F  +A++ +   +++      F + K+HA+  +     +     
Sbjct: 133 AIRKIKDYDPDFSTKTFAEKAQDIF---IEAHNNLTNFNKEKMHALVTEYCFPDM----- 184

Query: 140 DSLSTRKSNEKNVKSSLV-GIDDMKIINA------SIEENTVYITIRIVGQFISASYDKD 192
                R +  K ++ S +  ++  +++        S +     +T+R+  +   A YD+ 
Sbjct: 185 ----VRGNRYKTIRWSFLESLEPPRVVQVRCPTMVSKDNLYGQVTVRMHSRQTLAIYDRF 240

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
             L+    +I   V++   F R++      W L
Sbjct: 241 GRLMYGGEQIPKDVLEYLVFERHLVNPYGQWRL 273


>gi|83320119|ref|NP_001030272.1| 39S ribosomal protein L45, mitochondrial precursor [Bos taurus]
 gi|88932615|sp|Q3T142|RM45_BOVIN RecName: Full=39S ribosomal protein L45, mitochondrial;
           Short=L45mt; Short=MRP-L45; Flags: Precursor
 gi|74267993|gb|AAI02137.1| Mitochondrial ribosomal protein L45 [Bos taurus]
          Length = 306

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 12/144 (8%)

Query: 88  MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
           +R I     +F  KDF  +A++ +              +  LV    + D    +     
Sbjct: 122 IRRIKESDPNFKVKDFPEKAQDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIK---- 177

Query: 148 NEKNVKSSLV-GIDDMKIINAS------IEENTVYITIRIVGQFISASYDKDNLLISSDP 200
             K V  S V  ++  +++                +T+R+  +   A YD+   L+    
Sbjct: 178 -YKTVSWSFVESLEPPQVVQVRCSSLVTKSNTYGQVTVRMHTRQTLAIYDRFGRLMYGQE 236

Query: 201 EIFGKVIDIWTFVRNIPPSNPNWV 224
           ++   V++   F +++     +W 
Sbjct: 237 DVPRDVLEYVVFEKHLANPYGSWR 260


>gi|46581175|ref|YP_011983.1| hypothetical protein DVU2771 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450596|gb|AAS97243.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 321

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 49/136 (36%), Gaps = 19/136 (13%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
            FD + F+  A+ ++  +  S+ +  +  I +     V       +  +   +    ++ 
Sbjct: 200 GFDIEQFIKGAKMAFTRLQASWDKRDLEDISQFSTPAVLD----EIRRQAEADPVPSTTE 255

Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP--EIFGKVIDIWTFVR 214
           + + +  ++    E      T+              ++L+  DP  +    V ++W FVR
Sbjct: 256 ILLVNANLLGVVEENGQQTATVFF------------DVLLREDPRQDAPTSVREVWHFVR 303

Query: 215 NIPPSNPNWVLISTKL 230
            +  +   W L   + 
Sbjct: 304 PVKGTG-MWQLDGIQQ 318


>gi|120601588|ref|YP_965988.1| import inner membrane translocase, subunit Tim44 [Desulfovibrio
           vulgaris DP4]
 gi|120561817|gb|ABM27561.1| import inner membrane translocase, subunit Tim44 [Desulfovibrio
           vulgaris DP4]
 gi|311234849|gb|ADP87703.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
           vulgaris RCH1]
          Length = 311

 Score = 54.1 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 49/136 (36%), Gaps = 19/136 (13%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
            FD + F+  A+ ++  +  S+ +  +  I +     V       +  +   +    ++ 
Sbjct: 190 GFDIEQFIKGAKMAFTRLQASWDKRDLEDISQFSTPAVLD----EIRRQAEADPVPSTTE 245

Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP--EIFGKVIDIWTFVR 214
           + + +  ++    E      T+              ++L+  DP  +    V ++W FVR
Sbjct: 246 ILLVNANLLGVVEENGQQTATVFF------------DVLLREDPRQDAPTSVREVWHFVR 293

Query: 215 NIPPSNPNWVLISTKL 230
            +  +   W L   + 
Sbjct: 294 PVKGTG-MWQLDGIQQ 308


>gi|226942212|ref|YP_002797285.1| Tim44-like domain-containing protein [Azotobacter vinelandii DJ]
 gi|226717139|gb|ACO76310.1| Tim44-like domain protein [Azotobacter vinelandii DJ]
          Length = 284

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 56/183 (30%), Gaps = 18/183 (9%)

Query: 48  KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107
           + + ++R +      G    +    +       G       R  +     F+ + FL  A
Sbjct: 118 RLIVARRRKLHPAVAGHAPMQRETPAQPRPAATGAAQR---RAPIQAPAWFNEQRFLEAA 174

Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167
           R  + A+   +   ++  I + V  ++ + F      R       +S+ +    +++   
Sbjct: 175 RQHFTALQQHWDANELDKIAEFVTPQMLE-FIR--KERAELGDGFQSTYIDNLQVQLDGV 231

Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
               +    T+   G    +S  +                + W   R    + P W++  
Sbjct: 232 DDLADKTVATLTFSG-VSKSSRFEQGE----------TFSESWRMERRQGENQP-WLIAG 279

Query: 228 TKL 230
            + 
Sbjct: 280 IRQ 282


>gi|170699198|ref|ZP_02890251.1| import inner membrane translocase subunit Tim44 [Burkholderia
           ambifaria IOP40-10]
 gi|170135923|gb|EDT04198.1| import inner membrane translocase subunit Tim44 [Burkholderia
           ambifaria IOP40-10]
          Length = 218

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 71/234 (30%), Gaps = 29/234 (12%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M +   +I L A I       +R  + ++   E  +S   S     S            G
Sbjct: 1   MMANVIVIALLAMIG---IWLVRKFMNRRRSQEPAYSVGGSASSSGSYSQSPSFQQGSTG 57

Query: 66  KKKDNLDSINELFPIG---------TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116
                  S       G              +    + V   FD + FL  A+  +  +  
Sbjct: 58  NNYAGSGSSYANEAQGVFGGGAAAAGAAGAMAGAPLQVPAGFDTEAFLRSAKVYFVRLQA 117

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           ++ +G +  I +     ++ +    L +R       ++ +V + D +++           
Sbjct: 118 AWDQGNLADIREFTTPEMFAEIKIDLDSR--GNDANQTDVVQL-DAELVAIEDRGIEQSA 174

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           ++R  G  I  S +     +           ++W   +     +  W+L   + 
Sbjct: 175 SVRFHG-LIRESANAPAAPLD----------EVWNLSK---SGSQGWLLAGIQQ 214


>gi|188581463|ref|YP_001924908.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           populi BJ001]
 gi|179344961|gb|ACB80373.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           populi BJ001]
          Length = 318

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 66/229 (28%), Gaps = 41/229 (17%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFS-GKYVFSKRDERGIITLGKGKK 67
               ++    +    F +      ++   +   +G  +  +     +          G  
Sbjct: 124 FQIGLIALLVMLAVRFFR------RRQEGQPAMAGNSAYARSGPPPQGGANPGMNPMGGG 177

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE----AIVDSFFEGKV 123
                +  +   +                   P DF      ++E     I  ++    V
Sbjct: 178 YGGGAARPQPVQVQ------------------PDDF-----QAFERSLNEIQAAYGREDV 214

Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
            A+ +L    +   F + L    +     + S V +    +  A  E    + T+ +   
Sbjct: 215 AALRRLATPEMVGYFEEDLRANAARGVVNRISDVKLLQGDLSEAWREGRVEFATVAMRFS 274

Query: 184 FISASYDKDNLL-ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
                +++     + + P    +  + WTFVR        W+L + + G
Sbjct: 275 LRDEVFERATNRHVENGP---QEAKEFWTFVREPGGP---WLLSAIQQG 317


>gi|148284459|ref|YP_001248549.1| hypothetical protein OTBS_0806 [Orientia tsutsugamushi str.
           Boryong]
 gi|146739898|emb|CAM79872.1| hypothetical protein OTBS_0806 [Orientia tsutsugamushi str.
           Boryong]
          Length = 211

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 26/143 (18%)

Query: 88  MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
           +  + S    F+   F N A N  + I+++        I  L+D R    F+       S
Sbjct: 93  LIKLKSKVPSFNINRFYNTAINVIKMIIEAVQNVDYKTIFSLLDKRFVDQFHQM----SS 148

Query: 148 NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
              N+  + +      + +     N ++I IRI               I+ +     K+ 
Sbjct: 149 KYANIHVNSINFKLSNLNS---LGNNIFIKIRIE--------------INGN-----KLK 186

Query: 208 DIWTFVRNIPPSNPNWVLISTKL 230
           + WTF +NI    P W L + + 
Sbjct: 187 EEWTFSKNITTPGPQWYLSNIEE 209


>gi|239906247|ref|YP_002952987.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
 gi|239796112|dbj|BAH75101.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
          Length = 280

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 64/224 (28%), Gaps = 35/224 (15%)

Query: 20  TFFVFLQLRGVL-GKKTGN----EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSI 74
             FV  +   VL G++  N    + P               +      G     +   + 
Sbjct: 76  AMFVLFR---VLSGRRNKNGDQTQAPPRSDDQDDRDDDAPPQNQPPRRGPDMYTNAQATW 132

Query: 75  NELFPIGTRLNKVMRDIVSVYTDF-------DPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
           + L     R     R                  ++FL  A+ +Y  I  S        + 
Sbjct: 133 DMLRSPDKRPGTPARADGQAAPPAPANAPAGSDEEFLAGAKMAYSRIAASLGGRDFGDLA 192

Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
             V                  +  +  +  G  D+ +INA++ E          G+ +  
Sbjct: 193 SFVSPAYL----------AELQNTLPQTPAGRPDILLINAALAERRET-----PGRTVMV 237

Query: 188 SYDKDNLLISSDPEIFGKV--IDIWTFVRNIPPSNPNWVLISTK 229
               D  +++  P         + WTF R+      NW+L + +
Sbjct: 238 V---DYDVLARQPGATENTTLRERWTFSRDNAAPGANWLLDAMQ 278


>gi|242018556|ref|XP_002429740.1| mitochondrial 50S ribosomal protein L45, putative [Pediculus
           humanus corporis]
 gi|212514752|gb|EEB17002.1| mitochondrial 50S ribosomal protein L45, putative [Pediculus
           humanus corporis]
          Length = 306

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 59/194 (30%), Gaps = 26/194 (13%)

Query: 47  GKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNE 106
             Y     D +  I    G        I +            R I +  ++F+ K F  E
Sbjct: 69  NPYEPPPGDGKSSIIPKVGST-----CIVDKVKEQKDYMLAKRQITNYDSNFNTKVFPQE 123

Query: 107 ARNSYE---AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG----- 158
           A + Y     I+    +     + + V      +    +       K ++   +      
Sbjct: 124 AHDIYVKAHTILM---KNDPEELSEYVTESAIMEMMSGIK-----NKTLRWKFIESLEPP 175

Query: 159 -IDDMKIINASIEEN-TVYITIRIVGQFIS---ASYDKDNLLISSDPEIFGKVIDIWTFV 213
            I  M +     E N    +T+R   +  S   A YD+   L      I   V++   F 
Sbjct: 176 KIVQMSVAPVIQESNLFGQVTVRFHTKQASTMLAIYDRFGRLFYGSETIAKDVLEYVVFE 235

Query: 214 RNIPPSNPNWVLIS 227
           ++I      W L +
Sbjct: 236 KHIVNEYGTWRLHA 249


>gi|239817097|ref|YP_002946007.1| import inner membrane translocase subunit Tim44 [Variovorax
           paradoxus S110]
 gi|239803674|gb|ACS20741.1| import inner membrane translocase subunit Tim44 [Variovorax
           paradoxus S110]
          Length = 337

 Score = 53.7 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/251 (10%), Positives = 72/251 (28%), Gaps = 42/251 (16%)

Query: 7   DSGDFLILLFAFITFFVFLQL---RGVLGKKTGNEKPFSGFFSGKYVF---SKRDERGII 60
              + L++    +      ++   R      +G  +P    F G       S   +    
Sbjct: 100 GFANILLIGLLVMAGLFVWRMFKARSA--ASSGANRPGGFAFEGAGNPANASAPAQYSPA 157

Query: 61  TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVY-------------------TDFDPK 101
            +G        +     F  G+  +                               FD  
Sbjct: 158 NVGNDASARPWERNTAAFDAGSSAHGSSLSAAGAAAGGSMIGSALSGSQSWGIPAGFDVD 217

Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN--EKNVKSSLVGI 159
            FL+ A+ ++  + D++    V  +  ++   + ++    L+ R S+    + K+ +V +
Sbjct: 218 GFLSAAKRNFVTLQDAWDRADVSMLRSMMTDDMVEEIRSQLADRASHTGGASNKTEVVML 277

Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
            D K++      +    ++               ++        G   ++W   +     
Sbjct: 278 -DAKLLGIEELADAYLASVEFS-----------GMIREDASAGPGPFREVWNMTKP-TSG 324

Query: 220 NPNWVLISTKL 230
              W++   + 
Sbjct: 325 TSGWLVAGVQA 335


>gi|254707405|ref|ZP_05169233.1| calcium-binding EF-hand [Brucella pinnipedialis M163/99/10]
          Length = 29

 Score = 53.3 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 204 GKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
            ++ D+WTF R+    +PNW L++T+  +
Sbjct: 1   VEIKDLWTFARDTNSRDPNWKLVATEAED 29


>gi|330812676|ref|YP_004357138.1| hypothetical protein PSEBR_a5598 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380784|gb|AEA72134.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 291

 Score = 53.3 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 67/221 (30%), Gaps = 33/221 (14%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F IL+ A I  F+  +                 F + +    +            ++  
Sbjct: 102 IFDILIMAVIA-FLVFR-----------------FIAARRRKQQEQFAPAGHAPMQREVF 143

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
           N    +     G+      R +++    F+ + F+  AR+ + ++   +   ++  I + 
Sbjct: 144 NQQPASGSIFGGSAAPVAARPVINAPAWFNEQRFIEAARSHFMSLQQHWDANEMDKIAEF 203

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V  ++ +        R       +S+ +    +++       +    T+   G    + +
Sbjct: 204 VTPQLLEFLKR---ERAELGDGFQSTYIDNLHVQLDGVDDRADKTIATLTFSGVSKDSRF 260

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           DK                + W   R     +  W++   + 
Sbjct: 261 DKGEA-----------FSESWNMERAQG-DDQPWLVAGIRQ 289


>gi|167718139|ref|ZP_02401375.1| hypothetical protein BpseD_03908 [Burkholderia pseudomallei DM98]
          Length = 129

 Score = 53.3 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 47/143 (32%), Gaps = 17/143 (11%)

Query: 89  RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148
               +V   FD + FL  A+  +  +  ++ EG +  I +     ++ +    L  R + 
Sbjct: 1   AAAPAVPAGFDTEAFLRNAKVYFVRLQAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAG 60

Query: 149 EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208
               ++ +V + D +++           ++R  G       +                 +
Sbjct: 61  AN--QTDVVQL-DAELLAVEDRGGEHLASVRFHG----LIRETQGAAAE-------PFDE 106

Query: 209 IWTFVRNIPPSNPNWVLISTKLG 231
           +W   +     +  W+L   +  
Sbjct: 107 VWNLSK---SGSQGWLLAGIQQA 126


>gi|325522769|gb|EGD01254.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
           TJI49]
          Length = 124

 Score = 53.3 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 47/134 (35%), Gaps = 17/134 (12%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
            FD   FL  A+  +  +  ++ +G +  I +     ++ +    L +R    +  ++ +
Sbjct: 4   GFDADAFLRSAKVYFVRLQAAWDQGNLADIREFTTPEMFAEIKIDLDSR--GNEANQTDV 61

Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
           V + D +++           ++R  G  I  S +                 ++W   ++ 
Sbjct: 62  VQL-DAELVAVEDRGIEQSASVRFHG-LIRESANAPAEPFD----------EVWNLSKSG 109

Query: 217 PPSNPNWVLISTKL 230
                 W+L   + 
Sbjct: 110 GQG---WLLAGIQQ 120


>gi|321469612|gb|EFX80592.1| hypothetical protein DAPPUDRAFT_303989 [Daphnia pulex]
          Length = 327

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 68/195 (34%), Gaps = 23/195 (11%)

Query: 34  KTGNEKPFS-----GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVM 88
           ++  E+P         F          +   +TLG  K+        EL    ++    +
Sbjct: 86  RSWMERPVFVSATSSVFEAYVPPEGDGKLSALTLGGAKQS------MELLSKKSKSMMAV 139

Query: 89  RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148
           R I S   DF  K F  EA+  Y     +  E     + + V    Y    D L      
Sbjct: 140 RKIKSFEEDFSTKYFPEEAQEIYLKAHKALAEKDDDTLHQCVTELCYPLMTDDL-----R 194

Query: 149 EKNVKSSLV-GIDDMKIINAS------IEENTVYITIRIVGQFISASYDKDNLLISSDPE 201
              V+   +  ++  ++++A        E     +T+R   Q   A YD+   LI  +  
Sbjct: 195 SCTVRWQFLKSLEPPRVVHARCTEVINKENIFSQVTVRFNTQQTLAVYDRFGRLIYGNEV 254

Query: 202 IFGKVIDIWTFVRNI 216
           +   V++   F +++
Sbjct: 255 VAKDVLEYVVFEKHL 269


>gi|73853856|ref|NP_001027509.1| 39S ribosomal protein L45, mitochondrial precursor [Xenopus
           (Silurana) tropicalis]
 gi|82249321|sp|Q4QQQ4|RM45_XENTR RecName: Full=39S ribosomal protein L45, mitochondrial;
           Short=L45mt; Short=MRP-L45; Flags: Precursor
 gi|67867480|gb|AAH98093.1| hypothetical protein mgc108142 [Xenopus (Silurana) tropicalis]
          Length = 309

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
            +R +    ++F  K F  +A+  + A      +   H +  LV  R Y +       R 
Sbjct: 121 AIRKVKEYDSEFTTKTFPEKAQELFIAAHQCLTKFDRHELHTLVTERCYPEMV-----RG 175

Query: 147 SNEKNVKSSLV-GIDDMKIINAS-----IEENT-VYITIRIVGQFISASYDKDNLLISSD 199
           +  + ++ S V  I+  +++         + N    +T+R+  +     YD+   ++   
Sbjct: 176 NRYRTIQWSFVESIEAPRVVQVRCPEMVSKGNLYAQVTVRMHNKQSLTIYDRFGRVMCGS 235

Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWV 224
            E    V++   F R++      W 
Sbjct: 236 -EEPRDVLEYVVFERHMVNPYGTWR 259


>gi|67607228|ref|XP_666797.1| mitochondrial import inner membrane translocase [Cryptosporidium
           hominis TU502]
 gi|54657855|gb|EAL36565.1| mitochondrial import inner membrane translocase [Cryptosporidium
           hominis]
          Length = 424

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 56/142 (39%), Gaps = 21/142 (14%)

Query: 81  GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA-----IVDSFFEGKVHAIEKLVDSRVY 135
           G +++KV++++ ++  +F   DF+    + +E       ++S+ +   H +        Y
Sbjct: 251 GNKISKVVKEMKAINPNFKLTDFM----SFFEEYILPKFMESYLKCDEHKLRLHCGDVAY 306

Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE------------NTVYITIRIVGQ 183
           +    ++   K     + + ++ + D+++I A I +            N          Q
Sbjct: 307 RQLCSNIKKLKKMGLCLNTKILQLGDVELIGAEISDLMFSFKDCKIQANQPEFMFTFKTQ 366

Query: 184 FISASYDKDNLLISSDPEIFGK 205
            I+   D +  +IS   +   +
Sbjct: 367 QINYLKDSNGRIISGSIDDIKE 388


>gi|160900892|ref|YP_001566474.1| import inner membrane translocase subunit Tim44 [Delftia
           acidovorans SPH-1]
 gi|160366476|gb|ABX38089.1| import inner membrane translocase subunit Tim44 [Delftia
           acidovorans SPH-1]
          Length = 338

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/191 (10%), Positives = 60/191 (31%), Gaps = 17/191 (8%)

Query: 42  SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPK 101
           S   + +Y   K          +   +    +      IG+ L         V   FD +
Sbjct: 161 SAPLARQYNPEKVGNDASARPWEQNHQPAALASGSGVQIGSALAG--SQNWGVPEGFDTE 218

Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN--EKNVKSSLVGI 159
            FL  A+ ++  +  ++    + ++  ++   +  +    LS R+     +  ++ +V I
Sbjct: 219 GFLTAAKRNFVTLQSAWDRSDIASLRAMMTDEMLTEIRGQLSEREVQRPGQPNQTDVVMI 278

Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
            D +++      N    ++               ++            ++W   +     
Sbjct: 279 -DAQLLGIEDLGNDYMASVEFS-----------GMIREDASAGPTPFREVWNMTKP-KSG 325

Query: 220 NPNWVLISTKL 230
           +  W++   + 
Sbjct: 326 SSGWLVAGVQA 336


>gi|167892865|ref|ZP_02480267.1| hypothetical protein Bpse7_03801 [Burkholderia pseudomallei 7894]
          Length = 133

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 45/135 (33%), Gaps = 17/135 (12%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
            FD + FL  A+  +  +  ++ EG +  I +     ++ +    L  R +     ++ +
Sbjct: 13  GFDTEAFLRNAKVYFVRLQAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDV 70

Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
           V + D +++           ++R  G       +                 ++W   +  
Sbjct: 71  VQL-DAELLAVEDRGGEHLASVRFHG----LIRETQGAAAE-------PFDEVWNLSK-- 116

Query: 217 PPSNPNWVLISTKLG 231
              +  W+L   +  
Sbjct: 117 -SGSQGWLLAGIQQA 130


>gi|167737169|ref|ZP_02409943.1| hypothetical protein Bpse14_03836 [Burkholderia pseudomallei 14]
          Length = 135

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 45/135 (33%), Gaps = 17/135 (12%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
            FD + FL  A+  +  +  ++ EG +  I +     ++ +    L  R +     ++ +
Sbjct: 15  GFDTEAFLRNAKVYFVRLQAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDV 72

Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
           V + D +++           ++R  G       +                 ++W   +  
Sbjct: 73  VQL-DAELLAVEDRGGEHLASVRFHG----LIRETQGAAAE-------PFDEVWNLSK-- 118

Query: 217 PPSNPNWVLISTKLG 231
              +  W+L   +  
Sbjct: 119 -SGSQGWLLAGIQQA 132


>gi|256394912|ref|YP_003116476.1| import inner membrane translocase subunit Tim44 [Catenulispora
           acidiphila DSM 44928]
 gi|256361138|gb|ACU74635.1| import inner membrane translocase subunit Tim44 [Catenulispora
           acidiphila DSM 44928]
          Length = 448

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 62/174 (35%), Gaps = 10/174 (5%)

Query: 62  LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
           L  G  +    S        T++   +  +      + P+     A   Y     ++ + 
Sbjct: 94  LNTGSDRTAHRSDAAAAQRATQIEARVAAVADNDPTYAPEALKARAVWLYTTAQRAWSDR 153

Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
               +++++   +Y  +++ L   +S  +     +V    ++++N +     V  TI   
Sbjct: 154 DRAVLKQILSPVLYVKWDEELRDYQSRGEINTVDIVSGPSVQMVNIANRAGEVNDTITFR 213

Query: 182 GQFISASYDKDNLLISSDP----EIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
              I+A+ +   +  +       +   + ++ WT  ++       W++ S +  
Sbjct: 214 ---ITATLNDRVVRANGSHAVRKDGSTRPVEYWTLRKDASGE---WMVASIEQA 261


>gi|18043288|gb|AAH20130.1| Mitochondrial ribosomal protein L45 [Mus musculus]
          Length = 306

 Score = 53.3 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 54/148 (36%), Gaps = 12/148 (8%)

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
            +R I    T+F  KDF  +A++ +              +  LV    + D         
Sbjct: 121 AIRKIREFDTNFKTKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMV-----WD 175

Query: 147 SNEKNVKSSLV-GIDDMKIINASIEENT------VYITIRIVGQFISASYDKDNLLISSD 199
              K V+   V  ++  ++++               +T+R+  +   A YD+   L+   
Sbjct: 176 LKYKTVRWGFVESLEPAQVVHVRCSGLVNQSNMYGQVTVRLHTRQTLAIYDRFGRLMYGQ 235

Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
            ++   V++   F R++     +W + +
Sbjct: 236 EDVPKDVLEYVVFERHLMNPYGSWRMHA 263


>gi|167814302|ref|ZP_02445982.1| hypothetical protein Bpse9_04118 [Burkholderia pseudomallei 91]
          Length = 141

 Score = 53.0 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 45/135 (33%), Gaps = 17/135 (12%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
            FD + FL  A+  +  +  ++ EG +  I +     ++ +    L  R +     ++ +
Sbjct: 21  GFDTEAFLRNAKVYFVRLQAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDV 78

Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
           V + D +++           ++R  G       +                 ++W   +  
Sbjct: 79  VQL-DAELLAVEDRGGEHLASVRFHG----LIRETQGAAAE-------PFDEVWNLSK-- 124

Query: 217 PPSNPNWVLISTKLG 231
              +  W+L   +  
Sbjct: 125 -SGSQGWLLAGIQQA 138


>gi|146280567|ref|YP_001170720.1| hypothetical protein PST_0171 [Pseudomonas stutzeri A1501]
 gi|145568772|gb|ABP77878.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
 gi|327478845|gb|AEA82155.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 280

 Score = 53.0 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 69/218 (31%), Gaps = 37/218 (16%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           IL+F  I  F+  +    L  +   ++P     +       +     I  G         
Sbjct: 98  ILIFGLIA-FLLFRF---LAARRRQQQPAMAGHAPMQREMPQQPATSIFGGSAAPVAAAP 153

Query: 73  SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
            IN                      F+ ++F+  AR  + ++   +   ++  I + V  
Sbjct: 154 VINAPA------------------WFNEQNFVAAAREHFLSLQQHWDANEMDKIAEFVTP 195

Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
           ++          R       +S+   IDD++I    +++N          +  +A+    
Sbjct: 196 QLLGFLKQ---ERAEIGDAYQST--YIDDLQIQLDGVDDN---------AEKTTATLTFS 241

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            +  +S  +      + W   R    + P W++   + 
Sbjct: 242 GVAKTSRFDQGEPFSESWRMERVQGENQP-WLVAGIRQ 278


>gi|13385418|ref|NP_080203.1| 39S ribosomal protein L45, mitochondrial precursor [Mus musculus]
 gi|29611870|sp|Q9D0Q7|RM45_MOUSE RecName: Full=39S ribosomal protein L45, mitochondrial;
           Short=L45mt; Short=MRP-L45; Flags: Precursor
 gi|12847109|dbj|BAB27440.1| unnamed protein product [Mus musculus]
 gi|26349471|dbj|BAC38375.1| unnamed protein product [Mus musculus]
 gi|74180509|dbj|BAE34190.1| unnamed protein product [Mus musculus]
 gi|123209263|emb|CAM26393.1| mitochondrial ribosomal protein L45 [Mus musculus]
 gi|123258869|emb|CAM27000.1| mitochondrial ribosomal protein L45 [Mus musculus]
 gi|148684129|gb|EDL16076.1| mitochondrial ribosomal protein L45 [Mus musculus]
          Length = 306

 Score = 53.0 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 53/148 (35%), Gaps = 12/148 (8%)

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
            +R I     +F  KDF  +A++ +              +  LV    + D         
Sbjct: 121 AIRKIREFDANFKTKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMV-----WD 175

Query: 147 SNEKNVKSSLV-GIDDMKIINASIEENT------VYITIRIVGQFISASYDKDNLLISSD 199
              K V+   V  ++  ++++               +T+R+  +   A YD+   L+   
Sbjct: 176 LKYKTVRWGFVESLEPAQVVHVRCSGLVNQSNMYGQVTVRLHTRQTLAIYDRFGRLMYGQ 235

Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
            ++   V++   F R++     +W + +
Sbjct: 236 EDVPKDVLEYVVFERHLMNPYGSWRMHA 263


>gi|73966162|ref|XP_850801.1| PREDICTED: similar to mitochondrial ribosomal protein L45 [Canis
           familiaris]
          Length = 303

 Score = 53.0 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 33  KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK------ 86
           +K G   P        ++             +G  + +  +   L     +L K      
Sbjct: 61  RKAGLVIPPERLERPLHLACTAGIFDAYVPPEGDARLSSLAKEGLAQRSEQLKKKVASQL 120

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
            +R I     +F  KDF  +A++ +              +  LV    + D    +    
Sbjct: 121 SIRKIREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIK--- 177

Query: 147 SNEKNVKSSLV-GIDDMKIINAS-----IEENT-VYITIRIVGQFISASYDKDNLLISSD 199
              K V+ S V  ++  +++         + N    +T+R+  +   A YD+   L+   
Sbjct: 178 --YKTVRWSFVESLEPPQVVQVRCSNLLNQGNIYGQVTVRMHTRQTLAIYDRFGRLMYGQ 235

Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWV 224
            ++   V++   F +++     +W 
Sbjct: 236 EDVPRDVLEYVVFEKHLVNPYGSWR 260


>gi|209735096|gb|ACI68417.1| 39S ribosomal protein L45, mitochondrial precursor [Salmo salar]
 gi|303659089|gb|ADM15945.1| 39S ribosomal protein L45, mitochondrial precursor [Salmo salar]
          Length = 317

 Score = 53.0 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 12/158 (7%)

Query: 75  NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134
            E           +R I    ++F  K F  +A+  +    ++  +     +  LV  R 
Sbjct: 116 TEQIKQDAASQLAIRKIKEHESEFTTKAFPVKAQEIFVDAHNALTQFNKEKLHSLVTERC 175

Query: 135 YQDFNDSLSTRKSNEKNVKSSLV-GIDDMKIINASIEENT------VYITIRIVGQFISA 187
           Y +       R++  K ++   V  ++  K+++A   +          +T+R+  +   A
Sbjct: 176 YPEMV-----RRNRYKTLRWHFVESLEPPKVVHARCPDMVSKGDMYGQVTVRMHSRQTLA 230

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
            Y +   L+    E    V++     R++      W L
Sbjct: 231 VYGRFGRLMMGSEEEPRDVLEYLVLERHLVNHYGMWRL 268


>gi|221103937|ref|XP_002159080.1| PREDICTED: similar to mitochondrial ribosomal protein L45, partial
           [Hydra magnipapillata]
 gi|221118615|ref|XP_002159504.1| PREDICTED: similar to mitochondrial ribosomal protein L45, partial
           [Hydra magnipapillata]
          Length = 99

 Score = 52.6 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 154 SSLV-GIDDMKIINASI-----EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
              V  ++  ++INA++      +    +T+R+  + I    D+ N +++ DP+    VI
Sbjct: 15  WRFVKEVEKPRVINAALSAVSENDLYAQVTVRLHTEQILTIRDRFNRIVTGDPKTPRSVI 74

Query: 208 DIWTFVRNIPPSNPNWVLIS 227
           D   F R++P     W +  
Sbjct: 75  DYVVFERHLPDPYGKWRICG 94


>gi|41053493|ref|NP_956601.1| 39S ribosomal protein L45, mitochondrial [Danio rerio]
 gi|29476850|gb|AAH50166.1| Mitochondrial ribosomal protein L45 [Danio rerio]
          Length = 251

 Score = 52.6 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 55/154 (35%), Gaps = 12/154 (7%)

Query: 79  PIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138
           P  +     +R I    + F  K+F    +  +     +  E     +  LV  R Y + 
Sbjct: 54  PSTSHAQLAIRKIKDYDSTFTSKEFPGIGQQIFIDAHAALTEFNKEKLHSLVTERCYPEM 113

Query: 139 NDSLSTRKSNEKNVKSSLV-GIDDMKIINASIEENT------VYITIRIVGQFISASYDK 191
                 R +  K ++   +  ++  +++ A   +          +T+R+  +   A YD+
Sbjct: 114 V-----RGNRYKTLRWRFIESLEPPRLVQARCPDMISKGNLYGQVTVRMHSRQTLAIYDR 168

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
              L+  D E    V++     R++      W L
Sbjct: 169 FGRLMLGDEEEPRDVLEYLVMERHLVNPYGRWRL 202


>gi|268575792|ref|XP_002642876.1| Hypothetical protein CBG15146 [Caenorhabditis briggsae]
 gi|74784622|sp|Q616T6|RM45_CAEBR RecName: Full=Probable 39S ribosomal protein L45, mitochondrial;
           Flags: Precursor
 gi|187027386|emb|CAP33598.1| hypothetical protein CBG_15146 [Caenorhabditis briggsae AF16]
          Length = 361

 Score = 52.6 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 13/142 (9%)

Query: 92  VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151
              +  FD K F  +A + YE    +        + + +    +      +        +
Sbjct: 168 KQGFEKFDVKTFCAKAEDIYERAHKAMEARDKKEMYRCITEYAFAKMWPDVE-----NGS 222

Query: 152 VKSSLVGIDDMKIINA--------SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203
           V+  LV I +   + A            +   IT+R+  +   A YD+   LI    +  
Sbjct: 223 VRFELVSIVEPSRVVAVRCFDNPPKSGNDIAQITVRMHTRQKLALYDRFGGLILGSEDEE 282

Query: 204 GKVIDIWTFVRNIPPSNPNWVL 225
             V++   F  +I   +  W L
Sbjct: 283 KDVVEYVVFENHIAVVDGEWRL 304


>gi|300309983|ref|YP_003774075.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gi|300072768|gb|ADJ62167.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score = 52.6 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 70/228 (30%), Gaps = 25/228 (10%)

Query: 6   MDSGDFLILLFAFITFFVF--LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
           M S    + L A    FV    +      +K+   +P   +       +           
Sbjct: 31  MISTILTVALIALAIMFVVRMFR------RKSEASQPAPAWAGAAPQAADNASATPQIGS 84

Query: 64  KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
             K   +  +  +    G   N        V   FD   F+  A+  +  +  ++ +  +
Sbjct: 85  MLKTDQSAAAATQGGFGGGFGNAEQAPAYGVPAGFDTVGFVRNAKTYFIRLQAAWDKADI 144

Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
           + I +     ++ +    +  R +   + ++ +V + D +++      N    +++  G 
Sbjct: 145 NDIREFTTPEMFAELRLQIQERGAA--SNQTDVVSL-DAEVLGVETVGNDYLASVKFFG- 200

Query: 184 FISASYDKDNLLISSDPEI-FGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                       I  DP     +  +IW   +        WVL   + 
Sbjct: 201 -----------FIKEDPTASPAQFAEIWNLSKP-AAGQGGWVLAGIQQ 236


>gi|300705184|ref|YP_003746787.1| hypothetical protein RCFBP_21025 [Ralstonia solanacearum CFBP2957]
 gi|299072848|emb|CBJ44204.1| conserved membrane protein of unknown function [Ralstonia
           solanacearum CFBP2957]
          Length = 348

 Score = 52.6 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 72/245 (29%), Gaps = 43/245 (17%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKT-------------GNEKPFSGFFSGKYVFSKRDERGI 59
           ++L A + F V   +R + G +              G+ +P+    +             
Sbjct: 118 LILIAIVAFVVMWIIRKLRGTRAQGPAYATGGPSLGGDREPYVPSPAAPAAQPAAPVAAS 177

Query: 60  ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVY-------------TDFDPKDFLNE 106
            + G       L +  +       L      +                  DFD + FL  
Sbjct: 178 TSTGSAGNASGLGAGAQTAAQAWSLGGPAAPVADAPAAAPVAQQPWGVPADFDTQAFLRN 237

Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN 166
           A+  +  +  ++    ++ I +     ++ +    L+ R +      + +V + + +++ 
Sbjct: 238 AKVYFIRLQAAWDTANLNDIREFTTPEMFAEIKMDLADRGTAPNK--TDVVSV-EAELLG 294

Query: 167 ASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI-FGKVIDIWTFVRNIPPSNPNWVL 225
                     ++R  G            +I  D         ++W   +    S   WVL
Sbjct: 295 IETHPTEYLASVRFSG------------MIREDANAPAQPFAEVWNLTKPTQGSG-GWVL 341

Query: 226 ISTKL 230
              + 
Sbjct: 342 AGIQQ 346


>gi|193211982|ref|YP_001997935.1| hypothetical protein Cpar_0309 [Chlorobaculum parvum NCIB 8327]
 gi|193085459|gb|ACF10735.1| hypothetical protein Cpar_0309 [Chlorobaculum parvum NCIB 8327]
          Length = 490

 Score = 52.6 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 57/169 (33%), Gaps = 20/169 (11%)

Query: 61  TLGKGKKKDNLDSINELFPIGTRLNKVMRD--IVSVYTDFDPKDFLNEARNSYEAIVDSF 118
            + K +KK N ++  E  P  T   ++            FD   FL + R ++  +  ++
Sbjct: 91  VVAKFRKKSNENAFGEPVPEATPDARIDNTPLFPGAPPGFDQSAFLAKVRKAFLEVQRAW 150

Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN------ 172
                  + + +   VYQ FN      +  ++    S + I    +     +        
Sbjct: 151 SAQSTDMMRRFISDGVYQRFNTQFKMMRLLQQGNPLSNINISMAWVDRIEQDGRYDIVHA 210

Query: 173 --TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
                +T R +    +   D++            + ++ W+F+R    +
Sbjct: 211 GIKASMTDRFICAL-NHDLDEEG---------TNEFVEYWSFIRKRGAA 249



 Score = 39.9 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 64/162 (39%), Gaps = 13/162 (8%)

Query: 61  TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
            L +  ++D+     +       L+  + ++V+VY DF  +   ++A N++  ++ +   
Sbjct: 291 VLAEITQQDDYRRDGDRAEKMPGLDAKVAEMVTVYGDFSVQLVEDKASNAWMQMMTAKAM 350

Query: 121 GKVHAIEKLVDSRVYQDFNDSLST-RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
                + + V   +++         R+   +      + ++ + +I A   +    +T  
Sbjct: 351 HNPAIMRRFVADDLFRQLAPKYEQNREIFNR------IFLNRVTLIKAEQRDGKNILTFA 404

Query: 180 IVG--QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
           +    Q  S + +   L+   DPEI  +  +I T  R+    
Sbjct: 405 LTASIQRASLTGNSVRLI---DPEIVER-EEIMTLTRDATAG 442


>gi|114676397|ref|XP_512553.2| PREDICTED: 39S ribosomal protein L45, mitochondrial [Pan
           troglodytes]
          Length = 306

 Score = 52.6 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 67/205 (32%), Gaps = 18/205 (8%)

Query: 33  KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVM---- 88
           +K G   P        ++             +G  + +  S   L     R+ K M    
Sbjct: 61  RKAGLVIPPEKSNRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQV 120

Query: 89  --RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
             R I     +F  KDF  +A++ +              +  LV    + D    +    
Sbjct: 121 SIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK--- 177

Query: 147 SNEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSD 199
              K V+ S V       +  ++  +   + N    IT+R+  +   A YD+   L+   
Sbjct: 178 --YKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQ 235

Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWV 224
            ++   V++   F + +     +W 
Sbjct: 236 EDVPKDVLEYVVFEKQLTNPYGSWR 260


>gi|313496366|gb|ADR57732.1| Import inner membrane translocase [Pseudomonas putida BIRD-1]
          Length = 284

 Score = 52.6 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 69/222 (31%), Gaps = 34/222 (15%)

Query: 11  FLILLFAFIT--FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
           F I+ F  +    F+  +                 F + +    +            ++ 
Sbjct: 93  FQIMDFLIVALIAFLVFR-----------------FIAARRRQQQPQMAMPGHAPMQREA 135

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
               +   +F            +++    F+ + FL  ARN ++++   +   ++  I +
Sbjct: 136 HAQPAQPSIFGGSAAPAATAAPVINAPAWFNEQSFLAAARNHFQSLQQHWDANEMDKISE 195

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
            V  ++ +        R       +S+ +   ++++       +    T+   G   ++ 
Sbjct: 196 FVTPQMLEFLKR---ERAELGDGFQSTYIDNLEVQLDGVDDRADRTDATLTFRGVSKNSR 252

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           +D    + S            W  VR    + P W++   + 
Sbjct: 253 FD-QGEVFSES----------WHMVRAQGENQP-WLVAGIRQ 282


>gi|221102145|ref|XP_002170372.1| PREDICTED: similar to mitochondrial ribosomal protein L45, partial
           [Hydra magnipapillata]
          Length = 98

 Score = 52.6 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 159 IDDMKIINASI-----EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213
           ++  ++INA++      +    +T+R+  + I    D+ N +++ DP+    VID   F 
Sbjct: 20  VEKPRVINAALSAVSENDLYAQVTVRLHTEQILTIRDRFNRIVTGDPKTPRSVIDYVVFE 79

Query: 214 RNIPPSNPNWVLIS 227
           R++P     W +  
Sbjct: 80  RHLPDPYGKWRICG 93


>gi|194374347|dbj|BAG57069.1| unnamed protein product [Homo sapiens]
          Length = 329

 Score = 52.6 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 12/144 (8%)

Query: 88  MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
           +R I     +F  KDF  +A++ +              +  LV    + D    +     
Sbjct: 145 IRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK---- 200

Query: 148 NEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSDP 200
             K V+ S V       +  ++  +   + N    IT+R+  +   A YD+   L+    
Sbjct: 201 -YKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQE 259

Query: 201 EIFGKVIDIWTFVRNIPPSNPNWV 224
           ++   V++   F + +     +W 
Sbjct: 260 DVPKDVLEYVVFEKQLTNPYGSWR 283


>gi|34304322|ref|NP_115727.3| 39S ribosomal protein L45, mitochondrial precursor [Homo sapiens]
          Length = 306

 Score = 52.6 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 12/144 (8%)

Query: 88  MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
           +R I     +F  KDF  +A++ +              +  LV    + D    +     
Sbjct: 122 IRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK---- 177

Query: 148 NEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSDP 200
             K V+ S V       +  ++  +   + N    IT+R+  +   A YD+   L+    
Sbjct: 178 -YKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQE 236

Query: 201 EIFGKVIDIWTFVRNIPPSNPNWV 224
           ++   V++   F + +     +W 
Sbjct: 237 DVPKDVLEYVVFEKQLTNPYGSWR 260


>gi|29611869|sp|Q9BRJ2|RM45_HUMAN RecName: Full=39S ribosomal protein L45, mitochondrial;
           Short=L45mt; Short=MRP-L45; Flags: Precursor
 gi|120660040|gb|AAI30383.1| Mitochondrial ribosomal protein L45 [Homo sapiens]
 gi|120660352|gb|AAI30385.1| Mitochondrial ribosomal protein L45 [Homo sapiens]
 gi|313883266|gb|ADR83119.1| mitochondrial ribosomal protein L45 [synthetic construct]
          Length = 306

 Score = 52.6 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 12/144 (8%)

Query: 88  MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
           +R I     +F  KDF  +A++ +              +  LV    + D    +     
Sbjct: 122 IRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK---- 177

Query: 148 NEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSDP 200
             K V+ S V       +  ++  +   + N    IT+R+  +   A YD+   L+    
Sbjct: 178 -YKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQE 236

Query: 201 EIFGKVIDIWTFVRNIPPSNPNWV 224
           ++   V++   F + +     +W 
Sbjct: 237 DVPKDVLEYVVFEKQLTNPYGSWR 260


>gi|303246498|ref|ZP_07332777.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
 gi|302492208|gb|EFL52083.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
          Length = 267

 Score = 52.2 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 60/197 (30%), Gaps = 26/197 (13%)

Query: 34  KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93
           ++G  +P+ G         KRD            +   D++       T      +    
Sbjct: 96  RSGPTEPYDGTPPPAPPRPKRDMYTN-------AQATWDALRSTPSSKTASQSAGQPSAG 148

Query: 94  VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153
              D   ++FL  A+ +Y  I+    +     +          +  +          ++ 
Sbjct: 149 ATPD---EEFLAGAKMAYGRILADIAKRDFDDLAGFTTPDFLANLKN----------SLP 195

Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213
            S     D+ ++ A++ E+         G       D   L+   D        D W FV
Sbjct: 196 LSPPPAPDVLLVEATLAEHREQ------GSQTVMVVDYKVLIHEKDAPHNTDRFDRWRFV 249

Query: 214 RNIPPSNPNWVLISTKL 230
           R+      NW+L + + 
Sbjct: 250 RDNATPGANWLLDAMEQ 266


>gi|241766060|ref|ZP_04763976.1| import inner membrane translocase subunit Tim44 [Acidovorax
           delafieldii 2AN]
 gi|241363941|gb|EER59229.1| import inner membrane translocase subunit Tim44 [Acidovorax
           delafieldii 2AN]
          Length = 235

 Score = 52.2 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/187 (6%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 47  GKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMR--DIVSVYTDFDPKDFL 104
            +     +           +     D+  +    G  +   +       +   FD + FL
Sbjct: 59  PRQYSPDKVGNDASARPWERSSMAFDAARQPQGSGVVIGSGLAGSQNWGIPAGFDAEGFL 118

Query: 105 NEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS-NEKNVKSSLVGIDDMK 163
           + A+ ++  +  ++    +  +  ++   +  +    L+ R+S        + V + + +
Sbjct: 119 SAAKRNFVTLQAAWDRSDIATLRSMMTDSMLDEIRTQLTERESHRGDQPNHTDVVMIEAQ 178

Query: 164 IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223
           ++     ++    ++               ++            ++W   +        W
Sbjct: 179 LLGIEELDDGYMASVEFS-----------GMIREELSAGPSPFREVWNMTKP-KTGTSGW 226

Query: 224 VLISTKL 230
           ++   + 
Sbjct: 227 LVAGVQA 233


>gi|26992029|ref|NP_747454.1| hypothetical protein PP_5353 [Pseudomonas putida KT2440]
 gi|24987165|gb|AAN70918.1|AE016736_1 conserved hypothetical protein [Pseudomonas putida KT2440]
          Length = 284

 Score = 52.2 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 69/222 (31%), Gaps = 34/222 (15%)

Query: 11  FLILLFAFIT--FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
           F I+ F  +    F+  +                 F + +    +            ++ 
Sbjct: 93  FQIMDFLIVALIAFLVFR-----------------FIAARRRQQQPQMAMPGHAPMQREA 135

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
               +   +F            +++    F+ + FL  ARN ++++   +   ++  I +
Sbjct: 136 HAQPAQPSIFGGSAAPAATAAPVINAPAWFNEQSFLAAARNHFQSLQQHWDANEMDKISE 195

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
            V  ++ +        R       +S+ +   ++++       +    T+   G   ++ 
Sbjct: 196 FVTPQMLEFLKR---ERAELGDGFQSTYIDNLEVQLDGVDDRADRTDATLTFRGVSKNSR 252

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           +D    + S            W  VR    + P W++   + 
Sbjct: 253 FD-QGEVFSES----------WHMVRAQGENQP-WLVAGIRQ 282


>gi|119897609|ref|YP_932822.1| hypothetical protein azo1318 [Azoarcus sp. BH72]
 gi|119670022|emb|CAL93935.1| conserved hypothetical membrane protein [Azoarcus sp. BH72]
          Length = 304

 Score = 52.2 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 53/136 (38%), Gaps = 15/136 (11%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
           DFD + F+ +A+ ++  +  S   G +  + +     ++ +   ++  R    ++ + + 
Sbjct: 184 DFDVQGFVRQAKVNFIRLQASHDAGNLDDLREFTTPEMFAELKTNILAR---GQSAQQTD 240

Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
           V   D +++    E +   +++   G       D+D            ++ ++W  V+  
Sbjct: 241 VLEIDAEVVEVVEEGSRYIVSVLFRGLLR---EDRDAAP--------EQIHEVWHLVKP- 288

Query: 217 PPSNPNWVLISTKLGE 232
              +  W L   +  +
Sbjct: 289 RDGSAGWKLAGIQQAQ 304


>gi|218530483|ref|YP_002421299.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           chloromethanicum CM4]
 gi|218522786|gb|ACK83371.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           chloromethanicum CM4]
          Length = 319

 Score = 52.2 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 11/128 (8%)

Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164
            ++E     I  ++    V A+ +L    +   F + L    +     + S V +    +
Sbjct: 197 QAFERSLQEIQSAYGREDVAALRRLATPEMVSYFEEDLRANAARGVVNRISDVKLLQGDL 256

Query: 165 INASIEENTVYITIRIVGQFISASYDKDNLL-ISSDPEIFGKVIDIWTFVRNIPPSNPNW 223
             A  E    + T+ +        +++ +   + + P    +  + WTFVR        W
Sbjct: 257 SEAWREGPAEFATVAMRFSLRDEVFERASNRHVENGP---QEAKEFWTFVREPGGP---W 310

Query: 224 VLISTKLG 231
           +L + + G
Sbjct: 311 LLSAIQQG 318


>gi|296446386|ref|ZP_06888331.1| import inner membrane translocase subunit Tim44 [Methylosinus
           trichosporium OB3b]
 gi|296256159|gb|EFH03241.1| import inner membrane translocase subunit Tim44 [Methylosinus
           trichosporium OB3b]
          Length = 325

 Score = 51.8 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 42/127 (33%), Gaps = 8/127 (6%)

Query: 110 SYEAIV----DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165
           ++E ++    +++    V  ++ L    +   F + L +        + S V +    + 
Sbjct: 199 AFERLLGETQEAYSREDVARLDALTTPEMASYFAEDLKSNAREGVVNRISGVKLLQGDLA 258

Query: 166 NASIEENTVYITI--RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223
            A  E    Y T+  R               ++  D     +  ++WTF R        W
Sbjct: 259 EAWREGGDEYATVAMRF-SLVDQFVERATGRVVRGDA-TPTQSTEVWTFRRPAGRGPEAW 316

Query: 224 VLISTKL 230
            L + + 
Sbjct: 317 RLSAIQQ 323


>gi|39943280|ref|XP_361177.1| hypothetical protein MGG_03720 [Magnaporthe oryzae 70-15]
 gi|145009682|gb|EDJ94338.1| hypothetical protein MGG_03720 [Magnaporthe oryzae 70-15]
          Length = 302

 Score = 51.8 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 50/139 (35%), Gaps = 23/139 (16%)

Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV--------- 157
           A+  + ++ ++F  G +  + ++    +YQ  +  +  R       +  L+         
Sbjct: 142 AKELHRSLSEAFAAGDLDTLRRVCMPNLYQTLSAKVLQR-PAGIRRQWELITYTGTLMYP 200

Query: 158 GIDDMKIINASIEENT------VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWT 211
            I D K++     + T        +TIR   +     +DK    I+  P+    V +   
Sbjct: 201 RIADHKLMEIPRRDGTRATAHQAVVTIR--SRQRLTQFDKTGE-ITGQPKEL-DVTEHLI 256

Query: 212 FVRNIPPSNPN---WVLIS 227
            +R +  + P    W +  
Sbjct: 257 MLRELDSNAPTPGDWKVFG 275


>gi|66359344|ref|XP_626850.1| possible mitochondrial import inner membrane, translocase subunit
           TIM44 [Cryptosporidium parvum Iowa II]
 gi|46228138|gb|EAK89037.1| possible mitochondrial import inner membrane, translocase subunit
           TIM44 [Cryptosporidium parvum Iowa II]
          Length = 424

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 56/142 (39%), Gaps = 21/142 (14%)

Query: 81  GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA-----IVDSFFEGKVHAIEKLVDSRVY 135
           G +++KV++++ ++  +F   DF+    + +E       ++S+ +   H +        Y
Sbjct: 251 GNKISKVVKEMKAINPNFKLTDFM----SFFEEYILPKFMESYLKCDEHKLRLHCGDVAY 306

Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE------------NTVYITIRIVGQ 183
           +    ++   K     + + ++ + ++++I A I +            N          Q
Sbjct: 307 RQLCSNIEKLKKMGLCLNTKILQLGNVELIGAEISDLMFSFKDCKIQTNQPEFMFTFKTQ 366

Query: 184 FISASYDKDNLLISSDPEIFGK 205
            I+   D +  +IS   +   +
Sbjct: 367 QINCLQDSNGRIISGSIDDIKE 388


>gi|294953191|ref|XP_002787640.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239902664|gb|EER19436.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 794

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 47/133 (35%), Gaps = 12/133 (9%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T + + +R++  V  +F       +  +     I+  + EG V  +E       +   N 
Sbjct: 644 TEIAQSIREMKEVDPNFRLSQMAEDIEHVVAPRIIRWYLEGDVERLEAHCGEAAFAAVNA 703

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR-------IVGQFISASYDKDN 193
           S+  R + +  + ++++       ++  ++       +           Q I+   ++  
Sbjct: 704 SVKARHTQKLTLDTNILQPP----MDVELKGAKTASEVDSPCFIFTFSTQQINCLRNEFG 759

Query: 194 LLISSDPEIFGKV 206
            ++    +   +V
Sbjct: 760 EVVEGAVDDIRRV 772


>gi|163851677|ref|YP_001639720.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           extorquens PA1]
 gi|163663282|gb|ABY30649.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           extorquens PA1]
          Length = 319

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 11/128 (8%)

Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164
            ++E     I  ++    V A+ +L    +   F + L    +     + S V +    +
Sbjct: 197 QAFERSLQEIQSAYGREDVAALRRLATPEMVSYFEEDLRANAARGVVNRISDVKLLQGDL 256

Query: 165 INASIEENTVYITIRIVGQFISASYDKDNLL-ISSDPEIFGKVIDIWTFVRNIPPSNPNW 223
             A  E    + T+ +        +++ +   + + P    +  + WTFVR        W
Sbjct: 257 SEAWREGPAEFATVAMRFSLRDEVFERASNRHVENGP---QEAKEFWTFVREPGGP---W 310

Query: 224 VLISTKLG 231
           +L + + G
Sbjct: 311 LLSAIQQG 318


>gi|12847837|dbj|BAB27727.1| unnamed protein product [Mus musculus]
          Length = 284

 Score = 51.8 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 53/148 (35%), Gaps = 12/148 (8%)

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
            +R I     +F  KDF  +A++ +              +  LV    + D         
Sbjct: 126 AIRKIREFEANFKTKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMV-----WD 180

Query: 147 SNEKNVKSSLV-GIDDMKIINASIEENT------VYITIRIVGQFISASYDKDNLLISSD 199
              K V+   V  ++  ++++               +T+R+  +   A YD+   L+   
Sbjct: 181 LKYKTVRWGFVESLEPAQVVHVRCSGLVNQSNMYGQVTVRLHTRQTLAIYDRFGRLMYGQ 240

Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
            ++   V++   F R++     +W + +
Sbjct: 241 EDVPKDVLEYVVFERHLMNPYGSWRMHA 268


>gi|207742308|ref|YP_002258700.1| hypothetical protein RSIPO_00492 [Ralstonia solanacearum IPO1609]
 gi|206593696|emb|CAQ60623.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
          Length = 351

 Score = 51.4 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 69/250 (27%), Gaps = 53/250 (21%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           ++L A + F V   +R + G +     P    ++        D    +            
Sbjct: 121 LILIAIVAFVVMWIIRKLRGTR-----PQEPAYATGGPSLGGDREPYVPSPAAPAAQPAA 175

Query: 73  SINELFPIGTRLNK-VMRDIVSVY------------------------------TDFDPK 101
            +      G+  N   +                                      DFD +
Sbjct: 176 PVAASTGTGSAGNASGLGAGAQTAAQAWSLGGPAAPVADAPAAAQVAQQPWGVPADFDTQ 235

Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDD 161
            FL  A+  +  +  ++    ++ I +     ++ +    L+ R +      + +V + +
Sbjct: 236 AFLRNAKVYFIRLQAAWDTANLNDIREFTTPEMFAEIKMDLADRGTAPNK--TDVVSV-E 292

Query: 162 MKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI-FGKVIDIWTFVRNIPPSN 220
            +++           ++R  G            +I  D         ++W   +    S 
Sbjct: 293 AELLGIETHPTEYLASVRFSG------------MIREDANAPAQPFAEVWNLTKPTQGSG 340

Query: 221 PNWVLISTKL 230
             WVL   + 
Sbjct: 341 -GWVLAGIQQ 349


>gi|83746614|ref|ZP_00943664.1| Hypothetical protein RRSL_03792 [Ralstonia solanacearum UW551]
 gi|83726748|gb|EAP73876.1| Hypothetical protein RRSL_03792 [Ralstonia solanacearum UW551]
          Length = 348

 Score = 51.4 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 69/250 (27%), Gaps = 53/250 (21%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           ++L A + F V   +R + G +     P    ++        D    +            
Sbjct: 118 LILIAIVAFVVMWIIRKLRGTR-----PQEPAYATGGPSLGGDREPYVPSPAAPAAQPAA 172

Query: 73  SINELFPIGTRLNK-VMRDIVSVY------------------------------TDFDPK 101
            +      G+  N   +                                      DFD +
Sbjct: 173 PVAASTGTGSAGNASGLGAGAQTAAQAWSLGGPAAPVADAPAAAQVAQQPWGVPADFDTQ 232

Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDD 161
            FL  A+  +  +  ++    ++ I +     ++ +    L+ R +      + +V + +
Sbjct: 233 AFLRNAKVYFIRLQAAWDTANLNDIREFTTPEMFAEIKMDLADRGTAPNK--TDVVSV-E 289

Query: 162 MKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI-FGKVIDIWTFVRNIPPSN 220
            +++           ++R  G            +I  D         ++W   +    S 
Sbjct: 290 AELLGIETHPTEYLASVRFSG------------MIREDANAPAQPFAEVWNLTKPTQGSG 337

Query: 221 PNWVLISTKL 230
             WVL   + 
Sbjct: 338 -GWVLAGIQQ 346


>gi|319795430|ref|YP_004157070.1| import inner membrane translocase subunit tim44 [Variovorax
           paradoxus EPS]
 gi|315597893|gb|ADU38959.1| import inner membrane translocase subunit Tim44 [Variovorax
           paradoxus EPS]
          Length = 341

 Score = 51.4 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/247 (10%), Positives = 71/247 (28%), Gaps = 39/247 (15%)

Query: 10  DFLILLFAFITFFVFLQLRGVL-----GKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK 64
              +L+FA +  +   + R        G+     +      S     ++     +     
Sbjct: 106 LIGLLIFAALAVWRIFKARSAASNGTNGQGGFAFQGAGASPSNASAPAQYSPNNVGNDAS 165

Query: 65  GKKKDNLDSINELFPIGTR-------------------LNKVMRDIVSVYTDFDPKDFLN 105
            +  +   +  +  P                                 + T FD   FL 
Sbjct: 166 ARPWERSATAFDATPADGDRHGSSLSAAGAAAGGSMIGSALGGSQSWGIPTGFDVDGFLG 225

Query: 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN--EKNVKSSLVGIDDMK 163
            A+ ++  + D++    V  +  ++   + ++    L+ R S+    + K+ +V + D K
Sbjct: 226 AAKRNFVTLQDAWDRADVSMLRSMMTDEMVEEIRTQLADRASHTGGASNKTEVVML-DAK 284

Query: 164 IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223
           ++      +    ++               ++        G   ++W   +        W
Sbjct: 285 LLGIEELPDAYMASVEFS-----------GMIREDASAGPGPFREVWNMTKP-TSGGGGW 332

Query: 224 VLISTKL 230
           ++   + 
Sbjct: 333 LVAGVQA 339


>gi|255074829|ref|XP_002501089.1| predicted protein [Micromonas sp. RCC299]
 gi|226516352|gb|ACO62347.1| predicted protein [Micromonas sp. RCC299]
          Length = 1195

 Score = 51.4 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 42/111 (37%), Gaps = 11/111 (9%)

Query: 42   SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFP----IGTRLNKVMRDI------ 91
            +G    K   +  +   +       + +    +  + P    I + + + +R        
Sbjct: 940  AGPSEKKGDDAAGEGDDVKVDAHPAEPEAKSEVTVMRPSMWIIPSLMYRALRARLDMWWV 999

Query: 92   -VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
             V V   FD ++FL  A  ++E ++ +F    + A+  ++  R    F D+
Sbjct: 1000 RVMVDPHFDEREFLTGAIGAHEVVLKNFAANDMRALGAMLTDRALAAFRDA 1050


>gi|167835465|ref|ZP_02462348.1| hypothetical protein Bpse38_03171 [Burkholderia thailandensis
           MSMB43]
          Length = 134

 Score = 51.4 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 47/134 (35%), Gaps = 17/134 (12%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
            FD + FL  A+  +  +  ++ EG +  I +     ++ +    L  R +     ++ +
Sbjct: 14  GFDTEAFLRNAKVYFVRLQAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDV 71

Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
           V + D +++      +  + ++R  G       +                 ++W   +  
Sbjct: 72  VQL-DAELLAVEDRGDEHFASVRFHG----LIRETQGAAAE-------PFNEVWNLSK-- 117

Query: 217 PPSNPNWVLISTKL 230
              +  W+L   + 
Sbjct: 118 -AGSQGWLLAGIQQ 130


>gi|294899174|ref|XP_002776521.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239883553|gb|EER08337.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 604

 Score = 51.4 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 47/133 (35%), Gaps = 12/133 (9%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           T + + +R++  V  +F       +  +     I+  + EG V  +E       +   N 
Sbjct: 454 TEIAQSIREMKEVDPNFRLSQMAEDIEHVVAPRIIRWYLEGDVERLEAHCGEAAFAAVNA 513

Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR-------IVGQFISASYDKDN 193
           S+  R + +  + ++++       ++  ++       +           Q I+   ++  
Sbjct: 514 SVKARHTQKLTLDTNILQPP----MDVELKGAKTASEVDSPCFIFTFSTQQINCLRNEFG 569

Query: 194 LLISSDPEIFGKV 206
            ++    +   +V
Sbjct: 570 EVVEGAVDDIRRV 582


>gi|46205477|ref|ZP_00048494.2| hypothetical protein Magn03001526 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 147

 Score = 51.4 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 47/128 (36%), Gaps = 11/128 (8%)

Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164
            ++E     I  ++    V ++ +L    +   F + L    +     + S V +    +
Sbjct: 25  QAFERSLTEIQGAYGREDVASLRRLATPEMVGYFEEELRANAARGVVNRISDVKLLQGDL 84

Query: 165 INASIEENTVYITIRIVGQFISASYDKDNLL-ISSDPEIFGKVIDIWTFVRNIPPSNPNW 223
             A  E    + T+ +        +++ +   + + P    +  + WTFVR        W
Sbjct: 85  SEAWREGPVEFATVAMRFSLRDEVFERASNRHVENGP---QEAKEFWTFVREPGGP---W 138

Query: 224 VLISTKLG 231
           +L + + G
Sbjct: 139 LLSAIQQG 146


>gi|240138844|ref|YP_002963319.1| hypothetical protein MexAM1_META1p2250 [Methylobacterium extorquens
           AM1]
 gi|240008816|gb|ACS40042.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 324

 Score = 51.4 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 61/225 (27%), Gaps = 27/225 (12%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFS-GKYVFSKRDERGIITLGKGKK 67
               ++ F  +    F +      ++   +   +G     +     +          G  
Sbjct: 124 FQIGLIAFLVMMAVRFFR------RRQEGQPAMAGNAPHARSGLPPQGGMNSGVNPMGGG 177

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
                           +     D  +                    I  ++    V A+ 
Sbjct: 178 LGAGGLGGARPQPVQPVQVQPDDFQAFERSLQE-------------IQSAYGREDVAALR 224

Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
           +L    +   F + L    +     + S V +    +  A  E    + T+ +       
Sbjct: 225 RLATPEMVSYFEEDLRANAARGVVNRISDVKLLQGDLSEAWREGPAEFATVAMRFSLRDE 284

Query: 188 SYDKDNLL-ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
            +++ +   + + P    +  + WTFVR        W+L + + G
Sbjct: 285 VFERASNRHVENGP---QEAKEFWTFVREPGGP---WLLSAIQQG 323


>gi|148550461|ref|YP_001270563.1| import inner membrane translocase subunit Tim44 [Pseudomonas putida
           F1]
 gi|148514519|gb|ABQ81379.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
           putida F1]
          Length = 297

 Score = 51.4 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 69/222 (31%), Gaps = 34/222 (15%)

Query: 11  FLILLFAFIT--FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
           F I+ F  +    F+  +                 F + +    +            ++ 
Sbjct: 106 FQIMDFLIVALIAFLVFR-----------------FIAARRRQQQPQMAMPGHAPMQREA 148

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
               +   +F            +++    F+ + FL  ARN ++++   +   ++  I +
Sbjct: 149 HAQPAQPSIFGGSAAPAAAAAPVINAPAWFNEQSFLAAARNHFQSLQQHWDANEMDKISE 208

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
            V  ++ +        R       +S+ +   ++++       +    T+   G   ++ 
Sbjct: 209 FVTPQMLEFLKR---ERAELGDGFQSTYIDNLEVQLDGVEDRADRTDATLTFRGVSKNSR 265

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           +D    + S            W  VR    + P W++   + 
Sbjct: 266 FD-QGEVFSES----------WHMVRAQGENQP-WLVAGIRQ 295


>gi|148690046|gb|EDL21993.1| translocase of inner mitochondrial membrane 44, isoform CRA_b [Mus
           musculus]
          Length = 222

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 59/174 (33%), Gaps = 33/174 (18%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
           +   ++        D +  +       T +++V+ +I+ V   FD   FL++   +    
Sbjct: 67  ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQCETDIIPN 126

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           I+++   G++  ++       Y+          +  K ++   V I              
Sbjct: 127 ILEAMISGELDILKDWC----YEAL--------AMGKMMEQGPVLI-------------- 160

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
               +    Q +    +    +   DP+   +++ +W   R+    NP   W L
Sbjct: 161 ----VTFQAQVVMVIKNSKGEVYDGDPDKVQRMLYVWALCRDQEELNPYAAWRL 210


>gi|47077699|dbj|BAD18730.1| unnamed protein product [Homo sapiens]
          Length = 306

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 12/144 (8%)

Query: 88  MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
           +R I     +F  KDF  +A++ +              +  LV    + D    +     
Sbjct: 122 IRRIKDYDANFKIKDFPGKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK---- 177

Query: 148 NEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSDP 200
             K V+ S V       +  ++  +   + N    IT+R+  +   A YD+   L+    
Sbjct: 178 -YKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQE 236

Query: 201 EIFGKVIDIWTFVRNIPPSNPNWV 224
           ++   V++   F + +     +W 
Sbjct: 237 DVPKDVLEYVVFEKQLTNPYGSWR 260


>gi|254571313|ref|XP_002492766.1| Peripheral mitochondrial membrane protein involved in mitochondrial
           protein import [Pichia pastoris GS115]
 gi|238032564|emb|CAY70587.1| Peripheral mitochondrial membrane protein involved in mitochondrial
           protein import [Pichia pastoris GS115]
 gi|328353226|emb|CCA39624.1| Mitochondrial import inner membrane translocase subunit TIM44
           [Pichia pastoris CBS 7435]
          Length = 408

 Score = 51.4 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 45/130 (34%), Gaps = 10/130 (7%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV----DSFFEGKVHAIEKLVDSRVYQD 137
           T   KV+R    +   F+ ++F  + R   E I+    +++ +G    ++  +    +  
Sbjct: 245 TESAKVIRMFKEIDPSFNTENFNKQLR---EFIIPEVLEAYVQGDEAVLKTWLSEAPFNV 301

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA---SYDKDNL 194
           F+      K         ++ I  + +++A +        + I  +          K   
Sbjct: 302 FHAQQKQFKEQGLFSDGRILDIRGVDVLSAKVIPGNNSPALVIGARVQEVNVYRKAKTGE 361

Query: 195 LISSDPEIFG 204
           + +  P+   
Sbjct: 362 IAAGSPDNIN 371


>gi|124267379|ref|YP_001021383.1| hypothetical protein Mpe_A2192 [Methylibium petroleiphilum PM1]
 gi|124260154|gb|ABM95148.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 311

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/192 (10%), Positives = 57/192 (29%), Gaps = 20/192 (10%)

Query: 39  KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF 98
           +P                         +++     +  + PI      ++    ++  DF
Sbjct: 138 RPALAGAGAGGHGGATQPAWPAPAEPLQRRVEPSPVAAVPPIA-----MVSTGGALPADF 192

Query: 99  DPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG 158
           D   F   A+  +  +  +     ++ +       ++      L  R    +  + + V 
Sbjct: 193 DAAGFERLAKQIFIRLQAANDTADLNDLRAFTTPELFASLRLDLQER---GETSQQTDVL 249

Query: 159 IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP 218
             D ++++ + E+    +++R              L+            ++W  V+    
Sbjct: 250 KIDAEVLDLAREDGRQVVSVRF-----------HGLVRELSDAAATDFDEVWHLVKPDDD 298

Query: 219 SNPNWVLISTKL 230
           S P W +   + 
Sbjct: 299 SRP-WAIAGIEQ 309


>gi|120612288|ref|YP_971966.1| import inner membrane translocase subunit Tim44 [Acidovorax
           citrulli AAC00-1]
 gi|120590752|gb|ABM34192.1| import inner membrane translocase, subunit Tim44 [Acidovorax
           citrulli AAC00-1]
          Length = 343

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/203 (7%), Positives = 58/203 (28%), Gaps = 18/203 (8%)

Query: 33  KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMR--D 90
           +  G+  P       +Y              +        S       G  +   +    
Sbjct: 152 QGAGSASPSDAAVPRQYSPQNVGNDASARPFERSGMAFDASRTGGAGSGVVIGSGLSGSQ 211

Query: 91  IVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS-NE 149
              +  DFD + FL+ A+ ++  +  ++    +  +  ++   +  +    L  R++   
Sbjct: 212 NWGIPADFDTQGFLDAAKRNFVTLQAAWDRSDIATLRSMMTDSMVDEIRAQLGEREALRG 271

Query: 150 KNV--KSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
            +    + +V + + +++      +    ++               ++            
Sbjct: 272 ASQPNHTDVVML-EAQLLGIEDLGDGYMASVEFS-----------GMIREELSAGPSPFR 319

Query: 208 DIWTFVRNIPPSNPNWVLISTKL 230
           ++W   +        W++   + 
Sbjct: 320 EVWNMTKP-KSGTSGWLVAGVQA 341


>gi|325273940|ref|ZP_08140103.1| hypothetical protein G1E_12467 [Pseudomonas sp. TJI-51]
 gi|324100911|gb|EGB98594.1| hypothetical protein G1E_12467 [Pseudomonas sp. TJI-51]
          Length = 282

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 67/222 (30%), Gaps = 36/222 (16%)

Query: 11  FLILLFAFIT--FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
           F I+ F  +    F+  +              F      +               +   +
Sbjct: 93  FQIMDFLIVALIAFLVFR--------------FIAARRRQQQPQMAMPGHAPMQREAHGQ 138

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
               S+      G         +++    F+ + FL  ARN ++++   +   ++  I +
Sbjct: 139 PAQPSV-----FGGSAAPAAAPVINAPAWFNEQSFLAAARNHFQSLQQHWDANEMDKIAE 193

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
            V  ++ +        R       +S+ +   ++++       +    T+   G   ++ 
Sbjct: 194 FVTPQMLEFLKR---ERAELGDGFQSTYIDNLEVQLDGVDDRPDRTDATLTFRGVSKNSR 250

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            D    L S            W  VR +  + P W++   + 
Sbjct: 251 LD-QGELFSES----------WHMVRALGENQP-WLVAGIRQ 280


>gi|52842829|ref|YP_096628.1| transmembrane protein [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52629940|gb|AAU28681.1| transmembrane protein [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 270

 Score = 51.0 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 76/222 (34%), Gaps = 44/222 (19%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
           G    L+   + FF+   LR          +  +  F               T     ++
Sbjct: 88  GLITWLILGSVIFFIISFLR----------RKMNPGFQA-------------TQSGAFRQ 124

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
           ++ +   + +      N          T FD  +FL +A+ ++  +  ++ +  +  ++ 
Sbjct: 125 NSFEQFTQNY---GNRNSGGAHFAQQETSFDADNFLRDAKITFIRLQAAYDQKNLQDLQT 181

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
                V+ +    L  R       ++ ++ + D K+++ S +  ++  +++  G     +
Sbjct: 182 FTVPEVFAEIKMQLDERGDAPN--QTEVISL-DAKLLDVSKQSLSMIASVQFTG-----T 233

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             ++  +          + +IW F R        WV+   + 
Sbjct: 234 IKENGEI--------SNLDEIWHF-RQFDNRK-EWVVGGIQQ 265


>gi|328872019|gb|EGG20389.1| hypothetical protein DFA_07513 [Dictyostelium fasciculatum]
          Length = 310

 Score = 50.6 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 71/215 (33%), Gaps = 15/215 (6%)

Query: 28  RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87
             V+ +K G     + +        + +    +T         +D+I   +     +  +
Sbjct: 91  YTVMRQKVGRTMKPNIYIQSPGQIFEPNLPVPLTKILVTPSSWIDTIRFYYRTYGSIGVI 150

Query: 88  MRDIVSVYTD-FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN-----DS 141
              + ++  D F  K F+ +A+  +  +  +        +++L     Y         D 
Sbjct: 151 KSKLKALTQDQFAVKSFVEQAKEIFINLNKAIANSDTDEVKELATIHYYSILAKNTQFDK 210

Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--------YITIRIVGQFISASYDKDN 193
           +  +K+N K+  +  +    M  I A     T          I +   G+      D   
Sbjct: 211 VDGKKNNVKSEWTCELDKPKMLWIRAGQIRTTAAGGMEYFGQICVEFSGKQSLTRTDTKK 270

Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
            +I S  +   +  D++ F R +     +W +  T
Sbjct: 271 NIIISQVKDA-EFKDVYVFERCLSSLPSSWRVCQT 304


>gi|299131769|ref|ZP_07024964.1| import inner membrane translocase subunit Tim44 [Afipia sp. 1NLS2]
 gi|298591906|gb|EFI52106.1| import inner membrane translocase subunit Tim44 [Afipia sp. 1NLS2]
          Length = 315

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 47/118 (39%), Gaps = 5/118 (4%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           + +++    ++ +  +    +    +  L++  S     K + V +    +  A  E +T
Sbjct: 200 VQEAWSNEDMNRLHAIATPEMVSYMSQDLASNSSRGVINKVTNVKLLQGDLAEAWREGST 259

Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            Y T+ +    +  + ++    +I    +   +V +IWTFVR        W L + + 
Sbjct: 260 DYATVAMHFSLVDKTMERSSGRMIEGS-DTPQEVTEIWTFVRRPGAD---WELSAIQQ 313


>gi|193848536|gb|ACF22724.1| mitochondrial inner membrane protein [Brachypodium distachyon]
          Length = 226

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 96  TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155
             F   DF+ +   + + ++ ++ +G    ++K  +    +          S+    ++ 
Sbjct: 111 RTFSLPDFVADIEEAIKPVLIAYSKGDTEMLKKYCNKEFIERCEGERQAYASHNLFFRNK 170

Query: 156 LVGIDDMKIINASIEENTVYITI----RIVGQFISASYDKDNLLISS 198
           ++ I +  +I A +  +T  I +        Q I   +++D  +   
Sbjct: 171 VLHISEPHVIEAKMLGSTPLIILGVNAPFQTQQIHCVHNRDGQITHG 217


>gi|145498986|ref|XP_001435479.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124402612|emb|CAK68082.1| unnamed protein product [Paramecium tetraurelia]
          Length = 405

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 54/127 (42%), Gaps = 5/127 (3%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
           + + + ++ +  +  DFD  +   EA+  +E I + +  G + +++K+        F   
Sbjct: 240 SDVARAIKQMRMIDPDFDLYELEKEAKVIFEQIYNLYLLGDLESLQKVCGEAALGYFKVL 299

Query: 142 LSTRKSNE-KNVKSSLVGIDDMKIINASIEENTVY----ITIRIVGQFISASYDKDNLLI 196
           L  +++ + +     L  +D+++   ASI ++        TI+    F   S    + +I
Sbjct: 300 LKKQEAEKSEPKHKQLWNVDEIRFTRASIPDSVKLPVFIFTIKTQEIFCYVSKSDRSKII 359

Query: 197 SSDPEIF 203
             D E  
Sbjct: 360 DGDDERI 366


>gi|257095873|ref|YP_003169514.1| import inner membrane translocase subunit Tim44 [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257048397|gb|ACV37585.1| import inner membrane translocase subunit Tim44 [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 303

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 53/174 (30%), Gaps = 19/174 (10%)

Query: 61  TLGKGKKKDNLDSINELFPIGTRLNKVMRD----IVSVYTDFDPKDFLNEARNSYEAIVD 116
                   D   +   L   G      ++     I +V  DFD   FL  A+ ++  +  
Sbjct: 141 PGMAPPPFDPRPASAGLAAHGDDSPAALQPSGAPIANVPADFDSDGFLRIAKLNFIRLQA 200

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +   G +  I + V   ++ +       R       ++ +V ++  +++    E      
Sbjct: 201 ANDAGNLDDIREFVSPELFAEIRMQFEERAKA--PQQTDVVTLN-AQLLEVVTEVTRHIA 257

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           ++R              ++            ++W   + +      WV+   + 
Sbjct: 258 SVRFS-----------GMIREEAGAAAAPFDEVWNLSKPVE-GGKGWVVAGIQQ 299


>gi|301762886|ref|XP_002916855.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like
           [Ailuropoda melanoleuca]
          Length = 324

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 12/144 (8%)

Query: 88  MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
           +R I     +F  KDF  +A++ +            + +  LV    + D    ++    
Sbjct: 145 IRKIREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHNRLHTLVTENCFPDMVWDIT---- 200

Query: 148 NEKNVKSSLV-GIDDMKIINAS-----IEENT-VYITIRIVGQFISASYDKDNLLISSDP 200
             K V+ S +  ++  +++         + N    +T+R+  +   A YD+   L+    
Sbjct: 201 -YKTVRWSFIESLEPPQVVQVRCSSMLSQGNIYGQVTVRMHTRQTLAIYDRFGRLMYGQE 259

Query: 201 EIFGKVIDIWTFVRNIPPSNPNWV 224
           ++   V++   F +++     +W 
Sbjct: 260 DVPKDVLEYVVFEKHLVNPYGSWR 283


>gi|281344359|gb|EFB19943.1| hypothetical protein PANDA_004986 [Ailuropoda melanoleuca]
          Length = 276

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 12/144 (8%)

Query: 88  MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
           +R I     +F  KDF  +A++ +            + +  LV    + D    ++    
Sbjct: 101 IRKIREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHNRLHTLVTENCFPDMVWDIT---- 156

Query: 148 NEKNVKSSLV-GIDDMKIINAS-----IEENT-VYITIRIVGQFISASYDKDNLLISSDP 200
             K V+ S +  ++  +++         + N    +T+R+  +   A YD+   L+    
Sbjct: 157 -YKTVRWSFIESLEPPQVVQVRCSSMLSQGNIYGQVTVRMHTRQTLAIYDRFGRLMYGQE 215

Query: 201 EIFGKVIDIWTFVRNIPPSNPNWV 224
           ++   V++   F +++     +W 
Sbjct: 216 DVPKDVLEYVVFEKHLVNPYGSWR 239


>gi|207727902|ref|YP_002256296.1| hypothetical protein RSMK04298 [Ralstonia solanacearum MolK2]
 gi|206591144|emb|CAQ56756.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
          Length = 351

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 69/250 (27%), Gaps = 53/250 (21%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
           ++L A + F V   +R + G +     P    ++        D    +            
Sbjct: 121 LILIAIVAFVVMWVIRKLRGTR-----PQEPAYATGGPSLGGDREPYVPSPAAPAAQPAA 175

Query: 73  SINELFPIGTRLNK-VMRDIVSVY------------------------------TDFDPK 101
            +      G+  N   +                                      DFD +
Sbjct: 176 PVAASTGTGSAGNASGLGAGAQTAAQAWSLGGPAAPVADAPAAAPVAQQPWGVPADFDTQ 235

Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDD 161
            FL  A+  +  +  ++    ++ I +     ++ +    L+ R +      + +V + +
Sbjct: 236 AFLRNAKVYFIRLQAAWDTANLNDIREFTTPEMFAEIKMDLADRGTAPNK--TDVVSV-E 292

Query: 162 MKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI-FGKVIDIWTFVRNIPPSN 220
            +++           ++R  G            +I  D         ++W   +    S 
Sbjct: 293 AELLGIETHPTEYLASVRFSG------------MIREDANAPAQPFAEVWNLTKPTQGSG 340

Query: 221 PNWVLISTKL 230
             WVL   + 
Sbjct: 341 -GWVLAGIQQ 349


>gi|254561446|ref|YP_003068541.1| hypothetical protein METDI3032 [Methylobacterium extorquens DM4]
 gi|254268724|emb|CAX24685.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
          Length = 319

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 11/128 (8%)

Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164
            ++E     I   +    V A+ +L    +   F + L    +     + S V +    +
Sbjct: 197 QAFERSLQEIQSGYGREDVAALRRLATPEMVSYFEEDLRANAARGVVNRISDVKLLQGDL 256

Query: 165 INASIEENTVYITIRIVGQFISASYDKDNLL-ISSDPEIFGKVIDIWTFVRNIPPSNPNW 223
             A  E    + T+ +        +++ +   + + P    +  + WTFVR        W
Sbjct: 257 SEAWREGPAEFATVAMRFSLRDEVFERASNRHVENGP---QEAKEFWTFVREPGGP---W 310

Query: 224 VLISTKLG 231
           +L + + G
Sbjct: 311 LLSAIQQG 318


>gi|126308283|ref|XP_001372116.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 310

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 54/157 (34%), Gaps = 12/157 (7%)

Query: 75  NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134
            E    G      +R +     DF  K F  +A+  +              +  LV  R 
Sbjct: 109 TEKLKQGVASQLAIRKVREYDADFRTKTFPEKAQQIFVEAHQCLNTSDHDRLHALVTERC 168

Query: 135 YQDFNDSLSTRKSNEKNVKSSLV-GIDDMKIINAS-----IEENT-VYITIRIVGQFISA 187
           + +    +       K V  + V  ++  ++++        E N    +T+R+  +   A
Sbjct: 169 FPEMVWDI-----QLKTVHWNFVESLEPPRVVHVRCPNMVSEGNIYGQVTVRMHTRQTLA 223

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
            YD+   L+    ++   V++   F R++      W 
Sbjct: 224 IYDRFGRLMYGQEDVPKDVLEYVVFERHLTNPYGAWR 260


>gi|316966353|gb|EFV50945.1| zinc finger protein [Trichinella spiralis]
          Length = 763

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 72/200 (36%), Gaps = 21/200 (10%)

Query: 37  NEKPFSGFFSG---KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93
            E+P     SG          +E  +  L KGK    +DS   ++    R ++  + I S
Sbjct: 529 RERPIHISSSGTIFDEFVPDENENKVSLLVKGKGSRLVDSSKHVW----RNSRAGKKIRS 584

Query: 94  VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN-V 152
              DFDP  F++EA   Y     +        + +LV    Y          +      +
Sbjct: 585 YDADFDPVIFIDEALKIYLDAHSALQNRDSDRLHELVTEYAYP------EMWEELNLKSL 638

Query: 153 KSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
           +   V       +  M+  +   E+N    +T+R+  +   A YD+   L   +  +   
Sbjct: 639 RWQFVESVEPARVVQMRTSSVMQEDNIFAQVTVRMHTKQKLAIYDQFGRLYMGNETVPRD 698

Query: 206 VIDIWTFVRNIPPSNPNWVL 225
           V++   + +++      W L
Sbjct: 699 VLEYIVYEKHLSNLYGKWRL 718


>gi|156056531|ref|XP_001594189.1| hypothetical protein SS1G_03996 [Sclerotinia sclerotiorum 1980]
 gi|154701782|gb|EDO01521.1| hypothetical protein SS1G_03996 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 266

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 9/104 (8%)

Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL--------VG 158
           A   Y  +  +F  G    + ++    +Y+ F   +++R    + V  +L        + 
Sbjct: 123 AEALYREMYQNFAAGNTGRLRRMCTDGLYESFAQRIASR-PRGQKVTWNLEKMNRRPKIM 181

Query: 159 IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI 202
            +   +I            +RI  + +    D     +    E 
Sbjct: 182 SNKAVMIPGGSGNVIRQAVVRISSRQLITLKDSKGKELPGSSEK 225


>gi|195572942|ref|XP_002104454.1| GD20969 [Drosophila simulans]
 gi|194200381|gb|EDX13957.1| GD20969 [Drosophila simulans]
          Length = 335

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 51/137 (37%), Gaps = 22/137 (16%)

Query: 106 EARNSYEAI------VDS----FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155
            A+  +E +      + +          + I + V  R Y +   ++       K ++  
Sbjct: 135 GAKQKFEFLEKKSKSLMAAHTHMAAKDKYKIREFVSERCYPEMMHNVKD-----KTIRWK 189

Query: 156 LV-GIDDMKIINASI------EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208
            +  ++  ++++A +      E     +T+R   Q + A YD+   L+     I   V++
Sbjct: 190 FLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLMHGSEIITKDVLE 249

Query: 209 IWTFVRNIPPSNPNWVL 225
              F ++I      W L
Sbjct: 250 YVVFEKHISNEYGKWRL 266


>gi|315042568|ref|XP_003170660.1| mitochondrial inner membrane translocase subunit TIM44 [Arthroderma
           gypseum CBS 118893]
 gi|311344449|gb|EFR03652.1| mitochondrial inner membrane translocase subunit TIM44 [Arthroderma
           gypseum CBS 118893]
          Length = 540

 Score = 49.9 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 10/135 (7%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++    +  +F  + FL E R  Y    ++D++ +G V  ++  +    +  
Sbjct: 376 AENETAMVIKAFRQMDPNFQIEPFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFHV 434

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASY-DKD 192
           +       K+        ++ I  + I +A +    +     IT R   Q +     +K 
Sbjct: 435 YAALTKQYKTAGLKSDGRILDIRHVDISHARMLEPGDIPVFIITCR--SQEVHVYRKEKT 492

Query: 193 NLLISSDPEIFGKVI 207
             L +   +    V 
Sbjct: 493 GELAAGMEDKVQLVT 507


>gi|296202660|ref|XP_002748546.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like
           [Callithrix jacchus]
          Length = 329

 Score = 49.5 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 67/205 (32%), Gaps = 18/205 (8%)

Query: 33  KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK------ 86
           +K G   P        ++             +G  + +  S   L     R+ K      
Sbjct: 84  RKAGVVIPPERLERPIHLACSAGIFDAYVPPEGDARISFLSREGLKQKTERMKKTMASQV 143

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
            +R I      F  KDF  +A++ +              +  LV    + D    +    
Sbjct: 144 AIRKIKEHDASFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKC-- 201

Query: 147 SNEKNVKSSLV-GIDDMKIINA---SIEENT---VYITIRIVGQFISASYDKDNLLISSD 199
              K V+ S V  ++   ++     S+   +     +T+R+  +   A YD+   L+   
Sbjct: 202 ---KTVRWSFVESLEPSHVVQVRCSSMVNESNMYGQVTVRMHTRQTLAIYDRFGRLMYGQ 258

Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWV 224
            ++   V++   F + +     +W 
Sbjct: 259 EDVPKDVLEYVVFEKQLVNPYGSWR 283


>gi|319761670|ref|YP_004125607.1| import inner membrane translocase subunit tim44 [Alicycliphilus
           denitrificans BC]
 gi|330823541|ref|YP_004386844.1| import inner membrane translocase subunit Tim44 [Alicycliphilus
           denitrificans K601]
 gi|317116231|gb|ADU98719.1| import inner membrane translocase subunit Tim44 [Alicycliphilus
           denitrificans BC]
 gi|329308913|gb|AEB83328.1| import inner membrane translocase subunit Tim44 [Alicycliphilus
           denitrificans K601]
          Length = 332

 Score = 49.5 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/228 (8%), Positives = 68/228 (29%), Gaps = 31/228 (13%)

Query: 19  ITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINEL- 77
           +   + + +R    ++    +  +  F+ +   +               K   D+     
Sbjct: 118 VMVVIGMVMRS---RRPAASQEGAAPFAFQGAGAATPAEAQAPRQYSPDKVGNDASARPW 174

Query: 78  --------FPI---GTRLNKVMR--DIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
                    P    G+ +   +       V  DFD   FL  A+ ++  +  ++    + 
Sbjct: 175 ESTGMAYQAPATGGGSMIGSALAGSQNWGVPADFDVAGFLAAAKRNFTTLQAAWDRSDIA 234

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSN--EKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
            +  ++   +  +    LS R+S+   +    + V + + +++      +    ++    
Sbjct: 235 TLRSMMTDGMVDEIRAQLSERESHRGGEQPNHTDVVMLEAQLLGIEDLGDGYMASVEFS- 293

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                      ++            ++W   +     +  W++   + 
Sbjct: 294 ----------GMIREEPSAGPSPFREVWNMTKP-KNGSVGWLVAGVQA 330


>gi|326482394|gb|EGE06404.1| mitochondrial inner membrane translocase subunit TIM44
           [Trichophyton equinum CBS 127.97]
          Length = 543

 Score = 49.5 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 10/135 (7%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++    +  +F  + FL E R  Y    ++D++ +G V  ++  +    +  
Sbjct: 379 AENETAMVIKAFRQMDPNFQIEPFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFHV 437

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASY-DKD 192
           +       K+        ++ I  + I +A +    +     IT R   Q +     +K 
Sbjct: 438 YAALTKQYKTAGLKSDGRILDIRHVDISHARMLEPGDIPVFIITCR--SQEVHVYRKEKT 495

Query: 193 NLLISSDPEIFGKVI 207
             L +   +    V 
Sbjct: 496 GELAAGMEDKVQLVT 510


>gi|167036388|ref|YP_001671619.1| import inner membrane translocase subunit Tim44 [Pseudomonas putida
           GB-1]
 gi|166862876|gb|ABZ01284.1| import inner membrane translocase subunit Tim44 [Pseudomonas putida
           GB-1]
          Length = 284

 Score = 49.5 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 70/222 (31%), Gaps = 34/222 (15%)

Query: 11  FLILLFAFIT--FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
           F I+ F  +    F+  +                 F + +    +            ++ 
Sbjct: 93  FQIMDFLIVALIAFLVFR-----------------FIAARRRQQQPQMAMPGHAPMQREA 135

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
               +   +F            +++    F+ ++FL  ARN ++++   +   ++  I +
Sbjct: 136 HAQPAQPSIFGGSAAPAAAAAPVINAPAWFNEQNFLAAARNHFQSLQQHWDANEMDKIAE 195

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
            V  ++ +        R       +++ +   ++++       +    T+   G   ++ 
Sbjct: 196 FVTPQMLEFLKR---ERAELGDGFQATYIDNLEVQLDGLDDRTDRTDATLTFRGVSKNSR 252

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           +D    + S            W  VR    + P W++   + 
Sbjct: 253 FD-QGEVFSES----------WHMVRAQGENQP-WLVAGIRQ 282


>gi|56477136|ref|YP_158725.1| hypothetical protein ebA3013 [Aromatoleum aromaticum EbN1]
 gi|56313179|emb|CAI07824.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 283

 Score = 49.5 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 68/227 (29%), Gaps = 38/227 (16%)

Query: 5   KMDSG-DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
           +M S     +L+FA +  F       +L ++                 +     G +   
Sbjct: 92  EMGSLLMIALLVFAALMLF------RMLSRR----------------NAAARSGGAMQYA 129

Query: 64  KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
                 N  +                    + T+FD + F+ +A+  +  +  +   G +
Sbjct: 130 GAPAGGNFPASAPTSFPAASSAAAPAPAGKIPTNFDAEAFVRQAKVQFIRLQAANDAGNL 189

Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
             I +     ++ +    L+ R       ++ +V ++  +++    E     ++IR  G 
Sbjct: 190 EDIREFTSPEMFAEIRMQLTERGPG--TQRTDVVELN-GEVLEVVEEAQRYVVSIRFSGL 246

Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
                          +        ++W   +     N  WV+   + 
Sbjct: 247 LR-----------EEEGAAPAAFDEVWHLTKP-STGNVGWVVAGIQQ 281


>gi|19112697|ref|NP_595905.1| TIM23 translocase complex subunit Tim44 [Schizosaccharomyces pombe
           972h-]
 gi|6016371|sp|O60084|TIM44_SCHPO RecName: Full=Mitochondrial import inner membrane translocase
           subunit tim44; Flags: Precursor
 gi|3006160|emb|CAA18420.1| TIM23 translocase complex subunit Tim44 [Schizosaccharomyces pombe]
          Length = 427

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 60/184 (32%), Gaps = 14/184 (7%)

Query: 54  RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
           ++    I        D++  +       T  ++VMR    +   F+ + FL   R   E 
Sbjct: 236 QESEHPIVSSIRDMADSISGVWSRMFSETEASQVMRRFKEIDPSFNTEHFLQYLR---EY 292

Query: 114 IV----DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
           IV    +++ +G    ++  +    +  +  +      +       ++ I  + I++  +
Sbjct: 293 IVPEVTEAYVKGDKEVLKTWLSEAPFSVYETTTKEYAKHGVVSVGKILDIRGVDIMSQRL 352

Query: 170 E--ENTVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRNIP-PSNPN--- 222
               +     +    Q +    D     L++   +   +      F R      NP    
Sbjct: 353 LQPNDIPVFIVTFRTQEVHMFKDASSGELVAGKDDRIQQCTYASVFTRVEDELDNPETRG 412

Query: 223 WVLI 226
           W ++
Sbjct: 413 WRIV 416


>gi|83774116|dbj|BAE64241.1| unnamed protein product [Aspergillus oryzae]
          Length = 518

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 58/165 (35%), Gaps = 18/165 (10%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                 +V++    +  +F  ++FL E R  Y    ++D++ +G V  ++  +    +  
Sbjct: 354 AENETAQVIKKFREMDPNFQMEEFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFSV 412

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYD-KDNL 194
           +        +        ++ +  ++++NA +    +     +    Q +    + K   
Sbjct: 413 YAALAKQYTTAGLKSDGRILDVRGVEVMNARMLDPGDIPVFVVTCRSQEVHVYKNVKTGE 472

Query: 195 LISSDPEIFGKVIDIWTFVRNIP-----PSNPN---WVLISTKLG 231
           L +   +    V    T+   +       +NP    W LI  +  
Sbjct: 473 LAAGMEDKVQLV----TYAIGLTRIPEDVNNPETRGWRLIELQKA 513


>gi|307107447|gb|EFN55690.1| expressed protein [Chlorella variabilis]
          Length = 353

 Score = 49.1 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 62/166 (37%), Gaps = 45/166 (27%)

Query: 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL-----VGID 160
            A+++Y  +     E     +  ++ ++++  F D+++  K++    ++++      GI 
Sbjct: 190 GAKDAYYIVHKLLEEEDWETLRSMMSAKLFAAFQDTVAAYKADGLVWRTAISQDLQAGIR 249

Query: 161 DMKI-----------INASIEENTV-----------YITIRIVGQF-ISASYDKDNLLIS 197
            +               A++  +              +T++++G+  ++ +  +D  +++
Sbjct: 250 GLAFATKQQMETYDPEQAALAPDDAGALARPAGMWLVLTVQLLGEQRVTITRQEDGQVVA 309

Query: 198 --------SDPEIFGKVIDIWTFVR-----NIPPS--NPNWVLIST 228
                           V   W F R     ++P    + +W L+S 
Sbjct: 310 ELRRAGVVGGVGDRRPVR--WKFARGPLPASLPADRLDADWFLLSI 353


>gi|50551255|ref|XP_503101.1| YALI0D21142p [Yarrowia lipolytica]
 gi|49648969|emb|CAG81293.1| YALI0D21142p [Yarrowia lipolytica]
          Length = 418

 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/156 (10%), Positives = 50/156 (32%), Gaps = 12/156 (7%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQDFN 139
           T   KV+R    +   F+   F+   R  Y    +++++  G    ++  +    Y  + 
Sbjct: 255 TEAGKVIRMFKLMDPSFNQDQFMKTTRE-YIIPEVLEAWVTGDGETLKMWLSEAPYNIWA 313

Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG----QFISASYDKDNLL 195
                           ++ I  + I++A +   +  + + ++     +       K   L
Sbjct: 314 TQTKQYTEQGLFADGKILDIRGVDIMSAKVLPPS-DVPVYVISCRAQEVHLYRKAKTGEL 372

Query: 196 ISSDPEIFGKVIDIWTFVR---NIPPSNP-NWVLIS 227
            +   +   +   +    R   ++       W ++ 
Sbjct: 373 AAGTEDNIQQSTYVMVLTRVPEDMGNPETGGWKILE 408


>gi|54298612|ref|YP_124981.1| hypothetical protein lpp2676 [Legionella pneumophila str. Paris]
 gi|148358642|ref|YP_001249849.1| transmembrane protein [Legionella pneumophila str. Corby]
 gi|296108268|ref|YP_003619969.1| transmembrane protein [Legionella pneumophila 2300/99 Alcoy]
 gi|53752397|emb|CAH13829.1| hypothetical protein lpp2676 [Legionella pneumophila str. Paris]
 gi|148280415|gb|ABQ54503.1| transmembrane protein [Legionella pneumophila str. Corby]
 gi|295650170|gb|ADG26017.1| transmembrane protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 270

 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 75/222 (33%), Gaps = 44/222 (19%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
           G    L+   + FFV   LR          +  +  F               T     ++
Sbjct: 88  GLITWLILGSVIFFVVSFLR----------RKMNPGFQA-------------TQSGAFRQ 124

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
           ++ +   + +      N          T FD  +FL +A+ ++  +  ++ +  +  ++ 
Sbjct: 125 NSFEQFTQNY---GNRNSGGAHFAQQETSFDADNFLRDAKVTFIRLQAAYDQKNLQDLQT 181

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
                V+ +    L  R       ++ ++ + D K+++ S +  +   +++  G     +
Sbjct: 182 FTVPEVFAEIKMQLDERGDAPN--QTEVISL-DAKLLDVSKQSLSTIASVQFTG-----T 233

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             ++  +          + +IW F R        WV+   + 
Sbjct: 234 IKENGEI--------SNLDEIWHF-RQFDNRK-EWVVGGIQQ 265


>gi|310795797|gb|EFQ31258.1| Tim44-like domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 532

 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 48/135 (35%), Gaps = 10/135 (7%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                 +V++   ++  +F  + FL E R  Y    ++D++ +G +  ++  +    Y  
Sbjct: 368 AENETAQVIKKFRTMDPNFQTEPFLKELRE-YILPEVLDAYVKGDIETLKLWLSEAQYSV 426

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE----NTVYITIRIVGQFISASYD-KD 192
           +        +        ++ I  + I+ A + +        IT R   Q +    + K 
Sbjct: 427 YEALTKQYLTAGLKSDGKILDIRHVDIVRARMLDPGEIPVFVITCR--TQEVHVYRNAKS 484

Query: 193 NLLISSDPEIFGKVI 207
             L +   +    V 
Sbjct: 485 GELAAGMEDKVQLVT 499


>gi|85117796|ref|XP_965329.1| hypothetical protein NCU03229 [Neurospora crassa OR74A]
 gi|28927136|gb|EAA36093.1| conserved hypothetical protein [Neurospora crassa OR74A]
 gi|29290073|gb|AAO72335.1| mitochondrial inner membrane translocase subunit TIM44 [Neurospora
           crassa]
          Length = 526

 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 48/135 (35%), Gaps = 10/135 (7%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                 +V++ +  +   F+ ++FL E R  Y    +++++ +G V  ++  +    Y  
Sbjct: 362 AENETAQVIKKLRELDPGFNMENFLMELRE-YILPEVLEAYVKGDVETLKLWLSEAQYSV 420

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASYD-KD 192
           +                 ++ I  + ++ A +    +     IT R   Q +    + K 
Sbjct: 421 YEALTKQYLQAGLKSDGRILDIRGVDVLKARMLEPGDIPVFVITCR--TQEVHVYKNAKT 478

Query: 193 NLLISSDPEIFGKVI 207
             L +   +    V 
Sbjct: 479 GKLAAGMEDKVQLVT 493


>gi|326318355|ref|YP_004236027.1| import inner membrane translocase subunit Tim44 [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323375191|gb|ADX47460.1| import inner membrane translocase subunit Tim44 [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 341

 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/137 (8%), Positives = 46/137 (33%), Gaps = 16/137 (11%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS-NEKNV--K 153
           DFD + FL+ A+ ++  +  ++    +  +  ++   +  +    L  R+S    +    
Sbjct: 216 DFDTQGFLDAAKRNFVTLQAAWDRSDIATLRSMMTDSMVDEIRSQLGERESLRGASQPNH 275

Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213
           + +V + + +++      +    ++               ++            ++W   
Sbjct: 276 TDVVML-EAQLLGIEDLGDGYMASVEFS-----------GMIREEPSAGPSPFREVWNMT 323

Query: 214 RNIPPSNPNWVLISTKL 230
           +        W++   + 
Sbjct: 324 KP-KSGTSGWLVAGVQA 339


>gi|116182526|ref|XP_001221112.1| hypothetical protein CHGG_01891 [Chaetomium globosum CBS 148.51]
 gi|88186188|gb|EAQ93656.1| hypothetical protein CHGG_01891 [Chaetomium globosum CBS 148.51]
          Length = 536

 Score = 48.7 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++ + ++   F  + FL E R  Y    ++D++ +G V  ++  +    Y  
Sbjct: 372 AENETAMVIKRLRAMDPAFKLEPFLQELRE-YILPEVLDAYVKGDVETLKLWLSEAQYSV 430

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193
           +                 ++ I  + I+ A + +    I + IV    Q +    + K N
Sbjct: 431 YEALTKQYLQAGLKSDGKILDIRGVDILRARMLDP-GEIPVFIVTCRTQEVHVYRNAKSN 489

Query: 194 LLISSDPEIFGKVI 207
            L +   +    V 
Sbjct: 490 ELAAGMEDKVQLVT 503


>gi|317155790|ref|XP_001825374.2| TIM23 translocase complex subunit Tim44 [Aspergillus oryzae RIB40]
          Length = 508

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 58/165 (35%), Gaps = 18/165 (10%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                 +V++    +  +F  ++FL E R  Y    ++D++ +G V  ++  +    +  
Sbjct: 344 AENETAQVIKKFREMDPNFQMEEFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFSV 402

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYD-KDNL 194
           +        +        ++ +  ++++NA +    +     +    Q +    + K   
Sbjct: 403 YAALAKQYTTAGLKSDGRILDVRGVEVMNARMLDPGDIPVFVVTCRSQEVHVYKNVKTGE 462

Query: 195 LISSDPEIFGKVIDIWTFVRNIP-----PSNPN---WVLISTKLG 231
           L +   +    V    T+   +       +NP    W LI  +  
Sbjct: 463 LAAGMEDKVQLV----TYAIGLTRIPEDVNNPETRGWRLIELQKA 503


>gi|302665278|ref|XP_003024251.1| hypothetical protein TRV_01602 [Trichophyton verrucosum HKI 0517]
 gi|291188298|gb|EFE43640.1| hypothetical protein TRV_01602 [Trichophyton verrucosum HKI 0517]
          Length = 543

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 10/135 (7%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++    +  +F  + FL E R  Y    ++D++ +G V  ++  +    +  
Sbjct: 379 AENETAMVIKAFRQMDPNFQIEPFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFHV 437

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASY-DKD 192
           ++      K+        ++ I  + I +A +    +     IT R   Q +     +K 
Sbjct: 438 YSALTKQYKTAGLKSDGRILDIRHVDISHARMLEPGDIPVFIITCR--SQEVHVYRKEKT 495

Query: 193 NLLISSDPEIFGKVI 207
             L +   +    V 
Sbjct: 496 GELAAGMEDRVQLVT 510


>gi|198413804|ref|XP_002125945.1| PREDICTED: similar to Mitochondrial ribosomal protein L45 [Ciona
           intestinalis]
          Length = 400

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 21/153 (13%)

Query: 89  RDIVSVYTDFDPKDFLNEARNSYE-----------AIVDSFFEGKVHA-IEKLVDSRVYQ 136
           R +     +F  K F  EA++ Y             IV    +      ++ LV    Y 
Sbjct: 132 RIVKKRVDNFHRKRFPAEAQDIYIKAHNLLNTPNWTIV---NQEDTEERLQNLVTEHAYT 188

Query: 137 DFNDSLSTRK---SNEKNVKS-SLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
           D    L ++       ++++   +V I    +I  +       +T+R   +   A YD+ 
Sbjct: 189 DMVKGLDSKTVIWKWNESLEPPRVVRIRASPMI--TNNNYYGQVTVRFHSKQTLAIYDRF 246

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
             L+   P+    V++   F R+I      W +
Sbjct: 247 GRLMYGSPDEARNVLEFVVFERHISHPYGCWRI 279


>gi|238498640|ref|XP_002380555.1| mitochondrial inner membrane translocase subunit TIM44, putative
           [Aspergillus flavus NRRL3357]
 gi|220693829|gb|EED50174.1| mitochondrial inner membrane translocase subunit TIM44, putative
           [Aspergillus flavus NRRL3357]
          Length = 508

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 58/165 (35%), Gaps = 18/165 (10%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                 +V++    +  +F  ++FL E R  Y    ++D++ +G V  ++  +    +  
Sbjct: 344 AENETAQVIKKFREMDPNFQMEEFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFSV 402

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYD-KDNL 194
           +        +        ++ +  ++++NA +    +     +    Q +    + K   
Sbjct: 403 YAALAKQYTTAGLKSDGRILDVRGVEVMNARMLDPGDIPVFVVTCRSQEVHVYKNVKTGE 462

Query: 195 LISSDPEIFGKVIDIWTFVRNIP-----PSNPN---WVLISTKLG 231
           L +   +    V    T+   +       +NP    W LI  +  
Sbjct: 463 LAAGMEDKVQLV----TYAIGLTRIPEDVNNPETRGWRLIELQKA 503


>gi|170724288|ref|YP_001751976.1| import inner membrane translocase subunit Tim44 [Pseudomonas putida
           W619]
 gi|169762291|gb|ACA75607.1| import inner membrane translocase subunit Tim44 [Pseudomonas putida
           W619]
          Length = 284

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 70/222 (31%), Gaps = 34/222 (15%)

Query: 11  FLILLFAFIT--FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
             I+ F  +    F+  +                 F + +    +            ++ 
Sbjct: 93  LQIMDFLIVALIAFLVFR-----------------FIAARRRQQQPQMAAPGHAPFQREA 135

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
               +   +F            +++    F+ + FL  AR+ ++++   +   ++  I +
Sbjct: 136 HGQPAQPSIFGGSAAPAAPAAPVINAPAWFNEQSFLAAARSHFQSLQQHWDANEMDKIAE 195

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
            V  ++ +        R       +++ +   D+++       +    T+   G   ++ 
Sbjct: 196 FVTPQMLEFLKR---ERADLGDGFQATYIDNLDVQLDGVDDRADRTDATLTFRGVSKTSR 252

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           +D+       +P       + W  VR    + P W++   + 
Sbjct: 253 FDQ------GEP-----FSESWHMVRAPGENQP-WLVAGIRQ 282


>gi|170746985|ref|YP_001753245.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653507|gb|ACB22562.1| import inner membrane translocase subunit Tim44 [Methylobacterium
           radiotolerans JCM 2831]
          Length = 324

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 19/131 (14%)

Query: 109 NSYEA----IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164
            ++E     I D++       +  L    +   F++ L    +     K S V +    +
Sbjct: 202 QAFERLLGDIQDAYSREDRVTLGNLSTPEMVGYFDEELRGNAARGVVNKISDVKLLQGDL 261

Query: 165 INASIEENTVYITIRIVGQFISASYD-----KDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
             A  E+ T Y T+        A  D         ++S+D     +  ++WTF+R     
Sbjct: 262 AEAWGEDRTDYATVA----MRYALKDVMIERSSGRVVSTDSS---EATELWTFLRQPGRG 314

Query: 220 NPNWVLISTKL 230
              WVL + + 
Sbjct: 315 ---WVLSAIQQ 322


>gi|145492102|ref|XP_001432049.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399158|emb|CAK64652.1| unnamed protein product [Paramecium tetraurelia]
          Length = 405

 Score = 48.7 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 55/127 (43%), Gaps = 5/127 (3%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
           + + + ++ +  +  DFD  +   EA+  +E I + +  G++ +++K+        F   
Sbjct: 240 SDVARAIKQMRMIDPDFDLYELEKEAKVIFEQIYNLYLLGELESLQKVCGEAALGYFKVL 299

Query: 142 LSTRKSNE-KNVKSSLVGIDDMKIINASIEENTV----YITIRIVGQFISASYDKDNLLI 196
           L  +++ + +     L  +D+++   ASI ++        TI+    F   S    + ++
Sbjct: 300 LKKQEAEKSEPKHKQLWNVDEIRFTRASIPDSVKLPVFVFTIKTQEIFCYVSKTDRSKIV 359

Query: 197 SSDPEIF 203
             D E  
Sbjct: 360 DGDDERI 366


>gi|327292843|ref|XP_003231119.1| mitochondrial inner membrane translocase subunit TIM44
           [Trichophyton rubrum CBS 118892]
 gi|326466749|gb|EGD92202.1| mitochondrial inner membrane translocase subunit TIM44
           [Trichophyton rubrum CBS 118892]
          Length = 543

 Score = 48.3 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 10/135 (7%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++    +  +F  + FL E R  Y    ++D++ +G V  ++  +    +  
Sbjct: 379 AENETAMVIKAFRQMDPNFQIEPFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFHV 437

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASY-DKD 192
           ++      K+        ++ I  + I +A +    +     IT R   Q +     +K 
Sbjct: 438 YSALTKQYKTAGLKSDGRILDIRHVDISHARMLEPGDIPVFIITCR--SQEVHVYRKEKT 495

Query: 193 NLLISSDPEIFGKVI 207
             L +   +    V 
Sbjct: 496 GELAAGMEDRVQLVT 510


>gi|322391461|ref|ZP_08064930.1| NinF protein [Streptococcus peroris ATCC 700780]
 gi|321145544|gb|EFX40936.1| NinF protein [Streptococcus peroris ATCC 700780]
          Length = 331

 Score = 48.3 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 59/172 (34%), Gaps = 12/172 (6%)

Query: 54  RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
            D+         +   N +            N+ +  +     +FD   F + A+  Y  
Sbjct: 106 NDQNTPPETPYRRHTTNYEPEPTSHRRVENNNQAIDRLRYHDPNFDASTFTSWAKEVYIQ 165

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE-EN 172
           +  ++ +   +A+  L  + +Y+  +  L     ++       V +++++I + +   + 
Sbjct: 166 LQAAWTKKDWNAVRSLESASLYKQHSTQLEDYIQSKTTNVLERVCVENVRIKDFNSNPDG 225

Query: 173 TVYITIRIVGQFIS-ASYDKDNLLISSDPEIFGKVIDIWT-----FVRNIPP 218
              + + +          D+   +I  +P       D++T     F+R    
Sbjct: 226 NDTLVVILSSTLRDYVVEDESRKVIEGNP-----QKDLFTVYQMNFIRKHGS 272


>gi|115534069|ref|NP_497347.3| hypothetical protein Y119D3B.16 [Caenorhabditis elegans]
 gi|97537043|sp|Q95Y71|RM45_CAEEL RecName: Full=Probable 39S ribosomal protein L45, mitochondrial;
           Flags: Precursor
 gi|78771770|gb|AAK29715.4| Hypothetical protein Y119D3B.16 [Caenorhabditis elegans]
          Length = 357

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 49/142 (34%), Gaps = 13/142 (9%)

Query: 92  VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151
              +  FD K F  +A + Y     +  +    A+ K +    +      +        +
Sbjct: 165 KQGFEKFDIKTFCAKAEDIYVQAHRALEQRDKTAMYKYITEYAFAKMWPDVE-----NGS 219

Query: 152 VKSSLVGIDDMKIINA--------SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203
           V+  L+ + +   + A            +   IT+R+  +   A YD+   L+    +  
Sbjct: 220 VRFELISVLEPSRVVAVRCFDNPPKSGNDIAQITVRMHTRQKLAVYDRFGGLLLGSEDEE 279

Query: 204 GKVIDIWTFVRNIPPSNPNWVL 225
             V++   F  +I   +  W L
Sbjct: 280 KDVVEYVVFENHIAVVDGEWRL 301


>gi|328859204|gb|EGG08314.1| hypothetical protein MELLADRAFT_47868 [Melampsora larici-populina
           98AG31]
          Length = 497

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
           T   KV+R I  +  DF+   FL + R  Y    IVD++ +  +  ++       Y    
Sbjct: 334 TETAKVVRLIKEIDRDFEFDGFLRDLRE-YIVPEIVDAYVDADLKVLKLWTSEGAYNVIT 392

Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYI-TIRIVGQFISASYDKDNLLIS 197
             + T        ++ ++ +  + I++A  ++E  + +  I      I+   +  N  + 
Sbjct: 393 APMQTYLQRGLRPENQVIDLKGIDIMSAKVLQERELPVFVIAFRTHEINCFTNPGNGKVE 452

Query: 198 -SDPEIFGKVI 207
             +P+   +V 
Sbjct: 453 VGNPDQIEQVQ 463


>gi|302502672|ref|XP_003013297.1| hypothetical protein ARB_00482 [Arthroderma benhamiae CBS 112371]
 gi|291176860|gb|EFE32657.1| hypothetical protein ARB_00482 [Arthroderma benhamiae CBS 112371]
          Length = 584

 Score = 48.3 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 10/135 (7%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++    +  +F  + FL E R  Y    ++D++ +G V  ++  +    +  
Sbjct: 420 AENETAMVIKAFRQMDPNFQIEPFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFHV 478

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASY-DKD 192
           ++      K+        ++ I  + I +A +    +     IT R   Q +     +K 
Sbjct: 479 YSALTKQYKTAGLKSDGRILDIRHVDISHARMLEPGDIPVFIITCR--SQEVHVYRKEKT 536

Query: 193 NLLISSDPEIFGKVI 207
             L +   +    V 
Sbjct: 537 GELAAGMEDRVQLVT 551


>gi|326475398|gb|EGD99407.1| mitochondrial inner membrane translocase subunit TIM44
           [Trichophyton tonsurans CBS 112818]
          Length = 543

 Score = 48.3 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 10/135 (7%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++    +  +F  + FL E R  Y    ++D++ +G V  ++  +    +  
Sbjct: 379 AENETAMVIKAFRQMDPNFQIEPFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFHV 437

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASY-DKD 192
           +       K+        ++ I  + I +A +    +     IT R   Q +     +K 
Sbjct: 438 YAALTKQYKTAGLKSDGRILDIRHVDISHARMLEPGDIPVFIITCR--SQEVHVYRKEKT 495

Query: 193 NLLISSDPEIFGKVI 207
               +   +    V 
Sbjct: 496 GEFAAGMEDKVQLVT 510


>gi|147865818|emb|CAN78985.1| hypothetical protein VITISV_038307 [Vitis vinifera]
          Length = 489

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 1/91 (1%)

Query: 81  GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
           G RL             +  + F  EA + Y+ I          ++ K V   +Y    +
Sbjct: 376 GDRLKSAYAVAKLRKIGYSRQKFYTEAVDLYKEINSQIATSAKASLRKSVTENMYSALKN 435

Query: 141 SLSTRKSNEKNVKSSLVG-IDDMKIINASIE 170
            +  R+S    V   +V  +  ++ + A ++
Sbjct: 436 EIKQRESKWHKVYWEMVEPVVKIRTLRARMD 466


>gi|54295462|ref|YP_127877.1| hypothetical protein lpl2548 [Legionella pneumophila str. Lens]
 gi|53755294|emb|CAH16788.1| hypothetical protein lpl2548 [Legionella pneumophila str. Lens]
 gi|307611500|emb|CBX01174.1| hypothetical protein LPW_28731 [Legionella pneumophila 130b]
          Length = 270

 Score = 48.3 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 76/222 (34%), Gaps = 44/222 (19%)

Query: 9   GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
           G    L+   + FFV   LR          +  +  F               T     ++
Sbjct: 88  GLITWLILGSVIFFVVSFLR----------RKMNPGFQA-------------TQSGAFRQ 124

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
           ++ +   + +      N          T FD  +FL +A+ ++  +  ++ +  +  ++ 
Sbjct: 125 NSFEQFTQNY---GNRNSGGAHFTQQETSFDADNFLRDAKVTFIRLQAAYDQKNLQDLQT 181

Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
                V+ +    L  R       ++ ++ + D K+++ S +  ++  +++  G     +
Sbjct: 182 FTVPEVFAEIKMQLDERGDAPN--QTEVISL-DAKLLDVSKQSLSMIASVQFTG-----T 233

Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             ++  +          + +IW F R        WV+   + 
Sbjct: 234 IKENGEI--------SNLDEIWHF-RQFDNRK-EWVVGGIQQ 265


>gi|296417773|ref|XP_002838527.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634466|emb|CAZ82718.1| unnamed protein product [Tuber melanosporum]
          Length = 512

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 8/134 (5%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                  V+R    +  +F  + FL E R  Y    ++D++ +G    ++  + +  Y  
Sbjct: 348 AENETALVIRKFREMDPNFQVEPFLRELRE-YILPEVLDAYCKGDTDVLKAWLSAAQYNV 406

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193
           +        +N   +   ++ I ++ I++A I E    I + I+    Q +    D K  
Sbjct: 407 YAALNQQYTANGLKLDGKVLDIRNVDILSARILEP-GEIPVFIITCRTQEVHVYRDLKTG 465

Query: 194 LLISSDPEIFGKVI 207
            L +   +   +V 
Sbjct: 466 ELKAGMEDKVQQVT 479


>gi|149577603|ref|XP_001516222.1| PREDICTED: similar to Timm44 protein [Ornithorhynchus anatinus]
          Length = 452

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138
           T +++V+ +I+ V   FD   FL + ++  + I   +++   G++  ++       Y   
Sbjct: 296 TEMSEVLTEILKVDPTFDKDHFLRQCKD--DIIPNILEAMIAGELDILKDWCYEATYSQL 353

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKI 164
              +   K+      S ++ ID++ +
Sbjct: 354 AHPIQQAKAMGLQFHSRILDIDNIDV 379


>gi|325118573|emb|CBZ54124.1| hypothetical protein NCLIV_045570 [Neospora caninum Liverpool]
          Length = 624

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/195 (11%), Positives = 62/195 (31%), Gaps = 24/195 (12%)

Query: 34  KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIG-----TRLNKVM 88
           + G E+P         +   +         + K+   L +  E   +      T +   +
Sbjct: 397 RPGEERPTPEEQREDALVLSQRTTWDRFSSRFKEMSFLQNFFENPLVAQLFGETEIAASI 456

Query: 89  RDIVSVYTDF---DPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145
           R++  +   F   D  + +   R     IV +F  G    +        +     S+  R
Sbjct: 457 REMKILDPKFKLGDLHNMME--RVVAGHIVQAFLLGDEGTLAVHCAEGAFAALRASIIER 514

Query: 146 KSNEKNVKSSLVGIDDMKIINAS------------IEENTVYITIR-IVGQFISASYDK- 191
           ++ +  + S ++ + +++++ A                +     +     Q ++    + 
Sbjct: 515 RAQKVRLDSEILQLGNVELVGARRSITPPICATANFSADECPWFVYTFTCQQVNCLRSEV 574

Query: 192 DNLLISSDPEIFGKV 206
           D  ++    +   +V
Sbjct: 575 DGRVVEGREDDIRRV 589


>gi|289618005|emb|CBI55582.1| unnamed protein product [Sordaria macrospora]
          Length = 520

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 10/135 (7%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                 +V++ +  V   F+ ++FL E R  Y    +++++ +G V  ++  +    Y  
Sbjct: 356 AENETAQVIKKLREVDPGFNMENFLMELRE-YILPEVLEAYVKGDVQTLKLWLSEAQYSV 414

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE----NTVYITIRIVGQFISASYD-KD 192
           +        +        ++ I  + ++ A + +        IT R   Q +    + K 
Sbjct: 415 YEALTKQYLTAGLKSDGRILDIRGVDVLKARMLDPGDIPVFVITCR--TQEVHVYKNAKT 472

Query: 193 NLLISSDPEIFGKVI 207
             L +   +    V 
Sbjct: 473 GKLAAGMEDKVQLVT 487


>gi|239613424|gb|EEQ90411.1| mitochondrial inner membrane translocase subunit TIM44 [Ajellomyces
           dermatitidis ER-3]
          Length = 522

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 11/147 (7%)

Query: 32  GKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD-------NLDSINELFPIGTRL 84
           G++   EK      +G  V   +D     +  + +          NL             
Sbjct: 304 GRRP-LEKMEEDPNAGTNVTLHKDAAWKESWKEFRDSSRLMQSYFNLKHTYNESENPNET 362

Query: 85  NKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
            KV++    +   F  + FL E R  Y    ++D++ +G V  ++  +    Y  +    
Sbjct: 363 AKVIKKFREMDPSFQIEPFLRELRE-YMLPEVLDAYVKGDVETLKLWLSEAQYNVYAALA 421

Query: 143 STRKSNEKNVKSSLVGIDDMKIINASI 169
               +        ++ I  + I +A +
Sbjct: 422 QQYTTAGLKSDGRILDIRHVDISHARM 448


>gi|296807829|ref|XP_002844253.1| mitochondrial inner membrane translocase subunit TIM44 [Arthroderma
           otae CBS 113480]
 gi|238843736|gb|EEQ33398.1| mitochondrial inner membrane translocase subunit TIM44 [Arthroderma
           otae CBS 113480]
          Length = 540

 Score = 47.9 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 47/134 (35%), Gaps = 8/134 (5%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++    +  +F  + FL E R  Y    ++D++ +G V  ++  +    +  
Sbjct: 376 AENETAMVIKTFRQMDPNFQIEPFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFHV 434

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG----QFISASYDKDN 193
           +       K+        ++ I  + I +A + E    I + I+     +      +K  
Sbjct: 435 YAALTKQYKTAGLKSDGRILDIRHVDISHARMLEP-GDIPVFIITCRTQEVHVYRKEKTG 493

Query: 194 LLISSDPEIFGKVI 207
            L +   +    V 
Sbjct: 494 ELAAGMEDKVQLVT 507


>gi|218894631|ref|YP_002443501.1| hypothetical protein PLES_59241 [Pseudomonas aeruginosa LESB58]
 gi|218774860|emb|CAW30678.1| hypothetical protein PLES_59241 [Pseudomonas aeruginosa LESB58]
          Length = 284

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 69/221 (31%), Gaps = 35/221 (15%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              ILL A +  F+  +                          ++++      G    + 
Sbjct: 98  MLDILLIALVA-FIAFR-------------------FIAARRRQQNQGQPAMAGHAPMQR 137

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
            + +   +F            +++  + F+ + F+  AR  + ++   +   ++  I + 
Sbjct: 138 EMPAQAPIFGGAAAAAAAPSPVINAPSWFNEERFVGAAREHFMSLQQHWDANEMDKIAEF 197

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V  ++ Q        R       +S+ +   D+++     + +    T+   G   ++ +
Sbjct: 198 VTPQMLQWLKQ---ERAEIGDAYQSTYIDNLDVQLDGVDDQADKTIATLTFSGVSKTSRF 254

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D+                + W   R    + P W++   + 
Sbjct: 255 DQGEA-----------FSESWRMERAQGENQP-WLVAGIRQ 283


>gi|317404450|gb|EFV84863.1| hypothetical protein HMPREF0005_02511 [Achromobacter xylosoxidans
           C54]
          Length = 178

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 44/134 (32%), Gaps = 17/134 (12%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
           DFD  +FL +A+  +  I   +  G    +   +   +  +    L+ R +     +  L
Sbjct: 55  DFDTPNFLKQAKEQFVRIQAVWDSGSTDRLRDYLTDDLITELKPQLAERGAAPNKTEVVL 114

Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
           +     +++      +    ++R  G               +      +  ++W      
Sbjct: 115 LN---AELLGIETVSDGHLASVRFSGMLR-----------ETPGAEAFRFEEVWNL---F 157

Query: 217 PPSNPNWVLISTKL 230
            P+N  W+L   + 
Sbjct: 158 KPANGGWLLAGIQQ 171


>gi|330505764|ref|YP_004382633.1| import inner membrane translocase subunit Tim44 [Pseudomonas
           mendocina NK-01]
 gi|328920050|gb|AEB60881.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
           mendocina NK-01]
          Length = 284

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 64/217 (29%), Gaps = 33/217 (15%)

Query: 14  LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73
           L+F  I  F+  +    L  +   ++P        Y     +       G       L S
Sbjct: 100 LIFGLIA-FLLFRF---LAARRARQQPQMAAAGAPYQREMPNADNAPAAGSNIFGGRLAS 155

Query: 74  INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
              +                    F+ + F+   R  +  +   +   ++  I + V  +
Sbjct: 156 AAPVINAPAW--------------FNEQSFIAAGREHFMNLQQHWDADEMDKIAEFVTPQ 201

Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
           +          R       +S+   IDD+++    +++N          +   A+     
Sbjct: 202 LLDFLKR---ERAELGDGFQST--YIDDLQVQLDGVDDN---------AEKTIATLTFSG 247

Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           +  +S  +      + W   R    + P W++   + 
Sbjct: 248 VSKTSRFDQGEPFSESWRLERAQGDNQP-WLIAGIRQ 283


>gi|73960044|ref|XP_855187.1| PREDICTED: similar to 39S ribosomal protein L45, mitochondrial
           precursor (L45mt) (MRP-L45) [Canis familiaris]
          Length = 213

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 12/144 (8%)

Query: 88  MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
           +R I     +F  KDF  +A++ +              +  LV    + D    +     
Sbjct: 42  IRKIREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIK---- 97

Query: 148 NEKNVKSSLV-GIDDMKIINA-----SIEENT-VYITIRIVGQFISASYDKDNLLISSDP 200
             K V  S V  ++  +++         + N    +T+R   +   A YD+   L+    
Sbjct: 98  -YKMVHWSFVESLEPPQVVQVCCSNLLNQGNIYSQVTVRKHTRQTLAIYDRFGRLMYGQE 156

Query: 201 EIFGKVIDIWTFVRNIPPSNPNWV 224
           ++   V++   F +++     +W 
Sbjct: 157 DVPRDVLEYVVFEKHLVNPYGSWR 180


>gi|311894532|dbj|BAJ26940.1| hypothetical protein KSE_11060 [Kitasatospora setae KM-6054]
          Length = 443

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/187 (10%), Positives = 57/187 (30%), Gaps = 12/187 (6%)

Query: 50  VFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN 109
           +  KR  R    L     +    S  +      ++   +  +      F+       A  
Sbjct: 74  MRRKRKARQAAGLNTVSDRTAHRSDEQARERAAQIGARVDALAETDPTFERGALEQRAVW 133

Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
            Y     ++       + +++   +Y  + + L    S  +     +V   ++++++ + 
Sbjct: 134 LYTTAQQAWTRQDHAMLRQILSPVLYGKWAEELHDYASRGETNVVEIVAGPEVELVDLAN 193

Query: 170 EENTVYITIRI-----VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
               +  T+       +  ++   Y +D+              + WT  +        W+
Sbjct: 194 RTGELNDTVTFRITATLNDYVRRQYGEDSARKDGSTRPV----EYWTLRKGPAGE---WI 246

Query: 225 LISTKLG 231
           + S +  
Sbjct: 247 VSSIEQA 253


>gi|330898717|gb|EGH30136.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 155

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 54/168 (32%), Gaps = 15/168 (8%)

Query: 63  GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
                +       +    G+        +++    F+ + FL+ AR  ++++   +   +
Sbjct: 1   AAPPYQRETSQPAQNPIFGSSSPASAAPVINAPAWFNEQRFLDAARGHFQSLQQHWDANE 60

Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
           +  I + V  ++ Q        R       +S+ +    +++       +    T+   G
Sbjct: 61  MDKIAEFVTPQMLQFLK---KERADLGDGFQSTYIENLQVQLDGVDDRADKTIATLTFSG 117

Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
              ++ +D    + S            W   R    + P W++   + 
Sbjct: 118 VSKTSRFD-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 153


>gi|313111531|ref|ZP_07797330.1| hypothetical protein PA39016_003370006 [Pseudomonas aeruginosa
           39016]
 gi|310883832|gb|EFQ42426.1| hypothetical protein PA39016_003370006 [Pseudomonas aeruginosa
           39016]
          Length = 283

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 69/223 (30%), Gaps = 40/223 (17%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              ILL A +  F+  +                      ++ ++R ++            
Sbjct: 98  MLDILLIALVA-FIAFR----------------------FIAARRRQQNQGQPAMAGHAP 134

Query: 70  NLDSINELFPI--GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
               +    PI  G         +++  + F+ + F+  AR  + ++   +   ++  I 
Sbjct: 135 MQREMPAQAPIFGGAAATAAPSPVINAPSWFNEERFVGAAREHFMSLQQHWDANEMDKIA 194

Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
           + V  ++ Q        R       +S+ +    +++     + +    T+   G   ++
Sbjct: 195 EFVTPQMLQWLKQ---ERAEIGDAYQSTYIDNLVVQLDGVDDQADKTIATLTFSGVSKTS 251

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            +D+                + W   R    + P W++   + 
Sbjct: 252 RFDQGEA-----------FSESWRMERAQGENQP-WLVAGIRQ 282


>gi|171694970|ref|XP_001912409.1| hypothetical protein [Podospora anserina S mat+]
 gi|170947727|emb|CAP59890.1| unnamed protein product [Podospora anserina S mat+]
          Length = 569

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 10/135 (7%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++ + ++   F  + FL E R  Y    ++D++ +G V  ++  +    Y  
Sbjct: 405 AENETAMVIKKVRTMDPAFQMETFLQELRE-YILPEVLDAYVKGDVETLKLWLSEAQYSV 463

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE----NTVYITIRIVGQFISASYD-KD 192
           +         N       ++ I  + ++ A + +        IT R   Q +    + K 
Sbjct: 464 YEALTKQYLQNGLKSDGRILDIRGVDVLKARMLDPGEIPVFVITCR--TQEVHVYRNAKT 521

Query: 193 NLLISSDPEIFGKVI 207
             L +   +    V 
Sbjct: 522 GKLAAGMEDKVSLVT 536


>gi|67521648|ref|XP_658885.1| hypothetical protein AN1281.2 [Aspergillus nidulans FGSC A4]
 gi|40746718|gb|EAA65874.1| hypothetical protein AN1281.2 [Aspergillus nidulans FGSC A4]
          Length = 519

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 16/164 (9%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDS---RV 134
                 +V++    +  +F  + FL E R  Y    ++D++ +G +  ++  +      V
Sbjct: 355 AENETAQVVKKFREMDPNFQMEAFLREMRE-YILPEVLDAYVKGDIETLKLWLSDAQFHV 413

Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYD-K 191
           Y+     ++T           ++ I  + +++A +    +     +    Q +    + K
Sbjct: 414 YEALTKQITT---AGLKSDGRILDIRGVDVMSARMLDPGDIPVFVVMCRTQEVHVYRNVK 470

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNI-PPSNPN---WVLISTKLG 231
            N L +   +    V  +    R     +NP    W LI  +  
Sbjct: 471 TNELAAGMEDKVQLVNYVMGLTRIPEDVNNPETKGWRLIELQKA 514


>gi|108761631|ref|YP_631938.1| hypothetical protein MXAN_3756 [Myxococcus xanthus DK 1622]
 gi|108465511|gb|ABF90696.1| hypothetical protein MXAN_3756 [Myxococcus xanthus DK 1622]
          Length = 654

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 51/139 (36%), Gaps = 12/139 (8%)

Query: 88  MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
           +  +      F+ +  L++ +  +  +  ++F   +  +   +    +Q F   L   ++
Sbjct: 129 VNALKLKDPAFELEPMLDKTKWLFMELQQAWFLRDMTPVRPFLSDATFQRFGVQLELMRA 188

Query: 148 NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD---PEIFG 204
                  +   + D+++I     +    I +R+  +      D D  +  SD    E   
Sbjct: 189 QGVRDAITDFEVLDLQLIGLDQSQWFDSIHVRVHARM----RDTDVPVSFSDAQATEAAR 244

Query: 205 KV-----IDIWTFVRNIPP 218
           KV      ++WTFVR    
Sbjct: 245 KVPSEAFTEVWTFVRKPGA 263


>gi|327351927|gb|EGE80784.1| TIM23 translocase complex subunit Tim44 [Ajellomyces dermatitidis
           ATCC 18188]
          Length = 615

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137
                 KV++    +   F  + FL E R  Y    ++D++ +G V  ++  +    Y  
Sbjct: 451 AENETAKVIKKFREMDPSFQIEPFLRELRE-YMLPEVLDAYVKGDVETLKLWLSEAQYNV 509

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
           +        +        ++ I  + I +A +
Sbjct: 510 YAALAQQYTTAGLKSDGRILDIRHVDISHARM 541


>gi|259488396|tpe|CBF87801.1| TPA: mitochondrial inner membrane translocase subunit TIM44,
           putative (AFU_orthologue; AFUA_1G09840) [Aspergillus
           nidulans FGSC A4]
          Length = 514

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 16/164 (9%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDS---RV 134
                 +V++    +  +F  + FL E R  Y    ++D++ +G +  ++  +      V
Sbjct: 350 AENETAQVVKKFREMDPNFQMEAFLREMRE-YILPEVLDAYVKGDIETLKLWLSDAQFHV 408

Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYD-K 191
           Y+     ++T           ++ I  + +++A +    +     +    Q +    + K
Sbjct: 409 YEALTKQITT---AGLKSDGRILDIRGVDVMSARMLDPGDIPVFVVMCRTQEVHVYRNVK 465

Query: 192 DNLLISSDPEIFGKVIDIWTFVRNI-PPSNPN---WVLISTKLG 231
            N L +   +    V  +    R     +NP    W LI  +  
Sbjct: 466 TNELAAGMEDKVQLVNYVMGLTRIPEDVNNPETKGWRLIELQKA 509


>gi|295669600|ref|XP_002795348.1| mitochondrial inner membrane translocase subunit TIM44
           [Paracoccidioides brasiliensis Pb01]
 gi|226285282|gb|EEH40848.1| mitochondrial inner membrane translocase subunit TIM44
           [Paracoccidioides brasiliensis Pb01]
          Length = 533

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 10/135 (7%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++    +   F  + FL E R  Y    ++D++ +G +  ++  +    Y  
Sbjct: 369 AENETAMVIKKFREMDPSFQIEPFLRELRE-YMLPEVLDAYVKGDIETLKLWLSEAQYNV 427

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASYD-KD 192
           +        +        ++ I  + I +A +    +     IT R   Q +    + K 
Sbjct: 428 YAALAKQYTTAGLKSDGRILDIRHVDISHARMLEPGDIPVFIITCR--TQEVHVYRNAKT 485

Query: 193 NLLISSDPEIFGKVI 207
           N L +   +    V 
Sbjct: 486 NELAAGMEDKVQLVT 500


>gi|261194711|ref|XP_002623760.1| mitochondrial inner membrane translocase subunit TIM44 [Ajellomyces
           dermatitidis SLH14081]
 gi|239588298|gb|EEQ70941.1| mitochondrial inner membrane translocase subunit TIM44 [Ajellomyces
           dermatitidis SLH14081]
          Length = 540

 Score = 46.8 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137
                 KV++    +   F  + FL E R  Y    ++D++ +G V  ++  +    Y  
Sbjct: 376 AENETAKVIKKFREMDPSFQIEPFLRELRE-YMLPEVLDAYVKGDVETLKLWLSEAQYNV 434

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
           +        +        ++ I  + I +A +
Sbjct: 435 YAALAQQYTTAGLKSDGRILDIRHVDISHARM 466


>gi|290977539|ref|XP_002671495.1| predicted protein [Naegleria gruberi]
 gi|284085064|gb|EFC38751.1| predicted protein [Naegleria gruberi]
          Length = 405

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND---SLSTRKSNEKN 151
             DF+ K+F+  A+ +++ I +   E     +E +     Y+ F +    ++  +     
Sbjct: 99  DADFNEKEFIEGAKEAFKTIRELLVE-DPTQLEPMFTQSAYEGFKEWYKFIT--EEKHCK 155

Query: 152 VKSSLVGIDDMKIINASIE-ENTVYITIR 179
           +  SL  + + +I+N  ++ +    I +R
Sbjct: 156 IVGSLENLGETEILNIRVDADGETIINVR 184


>gi|320586817|gb|EFW99480.1| mitochondrial inner membrane translocase subunit [Grosmannia
           clavigera kw1407]
          Length = 554

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 21/177 (11%)

Query: 67  KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVH 124
            +   D I   F        V++ +  +   F  + FL E R  Y    ++D++ +G V 
Sbjct: 378 ARSITDRIAGFFAE-NETAMVIKKLRQMDPAFQLEPFLRELRE-YILPEVLDAYVKGDVE 435

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG-- 182
            ++  +    +  +                 ++ I  + I+ A + E    I + I+   
Sbjct: 436 TLKLWLSEAQFSVYEALTKQYLQAGLKSDGRILDIRHVDILKARMLEP-GEIPVFIITCR 494

Query: 183 --QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP-----PSNPN---WVLISTK 229
             +       K   L +   +    V    T+   I       SNP    W LI  +
Sbjct: 495 TQEVHVYRKVKSGDLAAGMEDKVQLV----TYAIGITRMPDDVSNPETRGWRLIEMQ 547


>gi|154314867|ref|XP_001556757.1| hypothetical protein BC1G_04775 [Botryotinia fuckeliana B05.10]
 gi|150848313|gb|EDN23506.1| hypothetical protein BC1G_04775 [Botryotinia fuckeliana B05.10]
          Length = 541

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                 +V++    +   F  + FL E R  Y    ++D++ +G    ++  + +  +  
Sbjct: 378 AENETAQVIKKFREMDPSFQMEPFLREMRE-YILPEVLDAYVKGDTETLKLWLSAAQFSV 436

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV---YITIRIVGQFISASYD-KDN 193
           ++       +        ++ I  +++++A + +N +    IT R   Q +    + K N
Sbjct: 437 YDALSKQYTTAGLKSDGRILDIRHVEVLSARMLDNDIPVFIITCR--TQEVHVYRNAKTN 494

Query: 194 LLISSDPEIFGKVI 207
            L +   +    V 
Sbjct: 495 QLAAGMEDKVQLVT 508


>gi|221486633|gb|EEE24894.1| import inner membrane translocase subunit TIM44, putative
           [Toxoplasma gondii GT1]
          Length = 598

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/142 (10%), Positives = 49/142 (34%), Gaps = 19/142 (13%)

Query: 82  TRLNKVMRDIVSVYTDF---DPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138
           T +   +R++  +   F   D  + +     ++  IV +F  G    +        +   
Sbjct: 424 TEIAASIREMKILDPKFKLADMHNMMERVIAAH--IVQAFLLGDEGTLAVHCAEGAFAAM 481

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS------------IEENTVYITIR-IVGQFI 185
             S+  R++ +  + S ++ + +++++ A                +     +     Q +
Sbjct: 482 RASIIERRAQKVRLDSEILQLGNVELVGARRSLTPPICATQNFSADECPWFVYTFTCQQV 541

Query: 186 SASYDK-DNLLISSDPEIFGKV 206
           +    + D  ++    +   +V
Sbjct: 542 NCLRSEVDGRVVEGREDDIRRV 563


>gi|70995173|ref|XP_752351.1| mitochondrial inner membrane translocase subunit TIM44, putative
           [Aspergillus fumigatus Af293]
 gi|66849986|gb|EAL90313.1| mitochondrial inner membrane translocase subunit TIM44, putative
           [Aspergillus fumigatus Af293]
 gi|159131108|gb|EDP56221.1| mitochondrial inner membrane translocase subunit TIM44, putative
           [Aspergillus fumigatus A1163]
          Length = 523

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 58/166 (34%), Gaps = 20/166 (12%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                 +V++    +  +F  + FL E R  Y    ++D++ +G +  ++  +    +  
Sbjct: 359 AENETAQVIKKFREMDPNFQMESFLREMRE-YILPEVLDAYVKGDIETLKLWLSDAQFHV 417

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193
           +        +        ++ I  + + +A + E    I + +V    Q +    + K  
Sbjct: 418 YAALSKQYTTAGLKSDGRILDIRGVDVSHARMLEP-GEIPVFVVTCRTQEVHVYRNVKTG 476

Query: 194 LLISSDPEIFGKVIDIWTFVRNIP-----PSNPN---WVLISTKLG 231
            L +   +    V    T+   +       +NP    W LI  +  
Sbjct: 477 ELAAGMEDKVQLV----TYAIGLTRIPEDVNNPETRGWRLIELQKA 518


>gi|237834217|ref|XP_002366406.1| mitochondrial import inner membrane translocase TIM44, putative
           [Toxoplasma gondii ME49]
 gi|211964070|gb|EEA99265.1| mitochondrial import inner membrane translocase TIM44, putative
           [Toxoplasma gondii ME49]
          Length = 598

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/142 (10%), Positives = 49/142 (34%), Gaps = 19/142 (13%)

Query: 82  TRLNKVMRDIVSVYTDF---DPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138
           T +   +R++  +   F   D  + +     ++  IV +F  G    +        +   
Sbjct: 424 TEIAASIREMKILDPKFKLADMHNMMERVIAAH--IVQAFLLGDEGTLAVHCAEGAFAAM 481

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS------------IEENTVYITIR-IVGQFI 185
             S+  R++ +  + S ++ + +++++ A                +     +     Q +
Sbjct: 482 RASIIERRAQKVRLDSEILQLGNVELVGARRSLTPPICATQNFSADECPWFVYTFTCQQV 541

Query: 186 SASYDK-DNLLISSDPEIFGKV 206
           +    + D  ++    +   +V
Sbjct: 542 NCLRSEVDGRVVEGREDDIRRV 563


>gi|226290219|gb|EEH45703.1| mitochondrial inner membrane translocase subunit TIM44
           [Paracoccidioides brasiliensis Pb18]
          Length = 534

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 10/135 (7%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++    +   F  + FL E R  Y    ++D++ +G +  ++  +    Y  
Sbjct: 370 AENETAMVIKKFREMDPSFQIEPFLRELRE-YMLPEVLDAYVKGDIETLKLWLSEAQYNV 428

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASYD-KD 192
           +        +        ++ I  + I +A +    +     IT R   Q +    + K 
Sbjct: 429 YAALAKQYTTAGLKSDGRILDIRHVDISHARMLEPGDIPVFIITCR--TQEVHVYRNAKT 486

Query: 193 NLLISSDPEIFGKVI 207
           N L +   +    V 
Sbjct: 487 NELAAGMEDKVQLVT 501


>gi|308460507|ref|XP_003092557.1| hypothetical protein CRE_26805 [Caenorhabditis remanei]
 gi|308253077|gb|EFO97029.1| hypothetical protein CRE_26805 [Caenorhabditis remanei]
          Length = 361

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 46/142 (32%), Gaps = 13/142 (9%)

Query: 92  VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151
              +  FD K F  +A + Y     +        + + +    +      +        +
Sbjct: 167 KQGFEKFDVKTFCAKAEDIYVRAHKALEARDKKEMYRCITEYAFAKMWPDVE-----NGS 221

Query: 152 VKSSLVGIDDMKIINA--------SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203
           V+  LV + +   + A            +   IT+R+  +   A YD+   LI       
Sbjct: 222 VRFELVEVVEPSRVVAVRCFDNPPKSGNDIAQITVRMHTKQKLAVYDRFGGLILGSENEE 281

Query: 204 GKVIDIWTFVRNIPPSNPNWVL 225
             V++   F  +I   +  W L
Sbjct: 282 KDVVEYVVFENHIAVVDGEWRL 303


>gi|225682773|gb|EEH21057.1| TIM23 translocase complex subunit Tim44 [Paracoccidioides
           brasiliensis Pb03]
          Length = 534

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 10/135 (7%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++    +   F  + FL E R  Y    ++D++ +G +  ++  +    Y  
Sbjct: 370 AENETAMVIKKFREMDPSFQIEPFLRELRE-YMLPEVLDAYVKGDIETLKLWLSEAQYNV 428

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASYD-KD 192
           +        +        ++ I  + I +A +    +     IT R   Q +    + K 
Sbjct: 429 YAALAKQYTTAGLKSDGRILDIRHVDISHARMLEPGDIPVFIITCR--TQEVHVYRNAKT 486

Query: 193 NLLISSDPEIFGKVI 207
           N L +   +    V 
Sbjct: 487 NELAAGMEDKVQLVT 501


>gi|119496017|ref|XP_001264782.1| mitochondrial inner membrane translocase subunit TIM44, putative
           [Neosartorya fischeri NRRL 181]
 gi|119412944|gb|EAW22885.1| mitochondrial inner membrane translocase subunit TIM44, putative
           [Neosartorya fischeri NRRL 181]
          Length = 509

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 58/166 (34%), Gaps = 20/166 (12%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                 +V++    +  +F  + FL E R  Y    ++D++ +G +  ++  +    +  
Sbjct: 345 AENETAQVIKKFREMDPNFQMESFLREMRE-YILPEVLDAYVKGDIETLKLWLSDAQFHV 403

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193
           +        +        ++ I  + + +A + E    I + +V    Q +    + K  
Sbjct: 404 YAALSKQYTTAGLKSDGRILDIRGVDVSHARMLEP-GEIPVFVVTCRTQEVHVYRNVKTG 462

Query: 194 LLISSDPEIFGKVIDIWTFVRNIP-----PSNPN---WVLISTKLG 231
            L +   +    V    T+   +       +NP    W LI  +  
Sbjct: 463 ELAAGMEDKVQLV----TYAIGLTRIPEDVNNPETRGWRLIELQKA 504


>gi|89897269|ref|YP_520756.1| hypothetical protein DSY4523 [Desulfitobacterium hafniense Y51]
 gi|89336717|dbj|BAE86312.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 315

 Score = 46.4 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 73/205 (35%), Gaps = 7/205 (3%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              I L   I  ++     G   ++T   +   G  +             +T       +
Sbjct: 87  LISIALILGI-VYLIYIAWGS-SRRTWKNQRSKGHSNYNNHNDSSPHPIDVTGKPITNAE 144

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
           NL   N          + MR     ++ +D +  +   R  +  I D++    +   E  
Sbjct: 145 NLRRFNNAIQ---YTRENMRYYAESFSRWDRQFLIERVRQVFFWIQDAWTRQDLTGGENY 201

Query: 130 VDSRVYQDFNDSLSTRKSNEKN--VKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
           + S V Q ++  L    S  +   +K  ++  +D++ I++ + E++ Y  + +    I  
Sbjct: 202 IVSSVLQKYSLDLENMNSRGERNVIKEPVLHAEDIEFIHSYLGESSQYFVVMLRASMIDY 261

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTF 212
           + D    +I+ + +      + W F
Sbjct: 262 TVDTSGKIIAGEDDNRLYFTEFWRF 286


>gi|221508389|gb|EEE33976.1| mitochondrial import inner membrane translocase TIM44, putative
           [Toxoplasma gondii VEG]
          Length = 598

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/142 (10%), Positives = 49/142 (34%), Gaps = 19/142 (13%)

Query: 82  TRLNKVMRDIVSVYTDF---DPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138
           T +   +R++  +   F   D  + +     ++  IV +F  G    +        +   
Sbjct: 424 TEIAASIREMKILDPKFKLADMHNMMERVIAAH--IVQAFLLGDEGTLAVHCAEGAFAAM 481

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS------------IEENTVYITIR-IVGQFI 185
             S+  R++ +  + S ++ + +++++ A                +     +     Q +
Sbjct: 482 RASIIERRAQKVRLDSEILQLGNVELVGARRSLTPPICATQNFSADECPWFVYTFTCQQV 541

Query: 186 SASYDK-DNLLISSDPEIFGKV 206
           +    + D  ++    +   +V
Sbjct: 542 NCLRSEVDGRVVEGREDDIRRV 563


>gi|332286636|ref|YP_004418547.1| hypothetical protein PT7_3383 [Pusillimonas sp. T7-7]
 gi|330430589|gb|AEC21923.1| hypothetical protein PT7_3383 [Pusillimonas sp. T7-7]
          Length = 314

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 18/134 (13%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
           DFD   FL  A+  +  I   +  G +  +   +   +  +    L  R    +   + +
Sbjct: 192 DFDTSAFLANAKAQFIEIQAVWDSGDLTRLTDYMTDDLVAEIKPELMAR---GEGNVTEV 248

Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
           V ++  +++           ++R  G    A  D +            +  ++W      
Sbjct: 249 VLLN-AELLGIEAVSGGHLASVRYSGMLREA-KDAE----------AFRFEEVWNL---Y 293

Query: 217 PPSNPNWVLISTKL 230
              N  W+L   + 
Sbjct: 294 KGDNTGWLLAGIQQ 307


>gi|72153688|ref|XP_792216.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115703999|ref|XP_001203219.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 210

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 60/162 (37%), Gaps = 29/162 (17%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ-------DFN-DSLSTRK 146
             DF   +F   A+ +   I +   EG +  +E L+  ++ Q        F+   +S+  
Sbjct: 41  DPDFSIDEFTQGAKQALVTISEEIAEGTLENLEDLLSPKLLQEIKNTCRGFSLKEISSLS 100

Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI-SASYDKDNLLISS------D 199
            + K++  +     D+ I         ++I ++       S S D +   +         
Sbjct: 101 ISGKDILHTF--PHDIAIHYDDKGGKFLFILMKFWCHSTQSGSSDPE---VKGFRIGKPP 155

Query: 200 PEIFGKVID--------IWTFVRNIPP-SNPNWVLISTKLGE 232
           P +  +  D         + F RNI   +NP W++   + G+
Sbjct: 156 PGVSQEQFDSLGSVYSCTYEFHRNISAGANPQWMITHMQHGQ 197


>gi|156052641|ref|XP_001592247.1| hypothetical protein SS1G_06487 [Sclerotinia sclerotiorum 1980]
 gi|154704266|gb|EDO04005.1| hypothetical protein SS1G_06487 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 344

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                 +V++    +   F  + FL E R  Y    ++D++ +G    ++  + +  +  
Sbjct: 181 AENETAQVIKKFREMDPSFQMEPFLREMRE-YILPEVLDAYVKGDTETLKLWLSAAQFSV 239

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV---YITIRIVGQFISASYD-KDN 193
           ++       +        ++ I  +++++A + +N +    IT R   Q +    + K N
Sbjct: 240 YDALSKQYTTAGLKSDGRILDIRHVEVLSARMLDNDIPVFIITCR--TQEVHVYRNAKTN 297

Query: 194 LLISSDPEIFGKVI 207
            L +   +    V 
Sbjct: 298 QLAAGMEDKVQLVT 311


>gi|152986284|ref|YP_001351640.1| hypothetical protein PSPA7_6329 [Pseudomonas aeruginosa PA7]
 gi|150961442|gb|ABR83467.1| hypothetical protein PSPA7_6329 [Pseudomonas aeruginosa PA7]
          Length = 281

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 68/221 (30%), Gaps = 38/221 (17%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              ILL A +  F+  +                      ++ ++R ++            
Sbjct: 98  MLDILLIALVA-FIAFR----------------------FIAARRRQQAQAQPAMAGHAP 134

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
               +    PI          +++  + F+ + F+  AR  + ++   +   ++  I + 
Sbjct: 135 MQREMPAQAPIFGGAAAAPSPVINAPSWFNEERFVGAAREHFMSLQQHWDANEMDKIAEF 194

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V  ++ Q        R       +S+ +    +++     + +    T+   G   ++ +
Sbjct: 195 VTPQMLQWLKQ---ERAEIGDAYQSTYIDNLAVQLDGVDDQADKTIATLTFSGVSKTSRF 251

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D+                + W   R    + P W++   + 
Sbjct: 252 DQGEA-----------FSESWRMERAQGENQP-WLVAGIRQ 280


>gi|321452278|gb|EFX63702.1| hypothetical protein DAPPUDRAFT_335104 [Daphnia pulex]
          Length = 271

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKS 154
             +F   DFL  A+ +   I ++   G + +++++++   Y +  +++  R S+E+  + 
Sbjct: 111 DNEFTVDDFLRGAKQAIFIIANAISVGDLESVKEMLEEEAYNEIKENMK-RCSSEQLAQF 169

Query: 155 SLVGIDDMKI-----INASIEENTVYITIRIV 181
           +L  ++D+ +     +   + +N   +  R V
Sbjct: 170 ALSTLEDVYMTFPYQVGIIMNDNKEGVQERFV 201


>gi|289677454|ref|ZP_06498344.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
           syringae pv. syringae FF5]
          Length = 151

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 54/163 (33%), Gaps = 15/163 (9%)

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
           +       +    G+        +++    F+ + FL+ AR  ++++   +   ++  I 
Sbjct: 2   QRETSQPAQNPIFGSSSPASTAPVINAPAWFNEQRFLDAARGHFQSLQQHWDANEMDKIA 61

Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
           + V  ++ Q        R       +S+ +    +++       +    T+   G   ++
Sbjct: 62  EFVTPQMLQFLK---KERADLGDGFQSTYIENLQVQLDGVDDRADKTIATLTFSGVSKTS 118

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            +D    + S            W   R    + P W++   + 
Sbjct: 119 RFD-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 149


>gi|293400358|ref|ZP_06644504.1| hypothetical membrane protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306758|gb|EFE48001.1| hypothetical membrane protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 297

 Score = 45.6 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 43/126 (34%), Gaps = 1/126 (0%)

Query: 78  FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD 137
              G    +++  I      F  ++F N A   +  + +++     H +     + ++  
Sbjct: 106 SNEGIFEEEIIARIQEEDPAFSAENFRNYASEVWLTLQEAWEAKDWHKVRPFESNTLFNV 165

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NLLI 196
            N  L     + K    ++  +  + I + S +E    + +++    +    D D   ++
Sbjct: 166 HNRQLQEYIDHHKTNYMNMQNVRGITIASYSSDEEHEIVHVKLDASLLDYVVDDDSGKVL 225

Query: 197 SSDPEI 202
                 
Sbjct: 226 EGSKTD 231


>gi|258570273|ref|XP_002543940.1| mitochondrial import inner membrane translocase subunit TIM44
           [Uncinocarpus reesii 1704]
 gi|237904210|gb|EEP78611.1| mitochondrial import inner membrane translocase subunit TIM44
           [Uncinocarpus reesii 1704]
          Length = 500

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 8/134 (5%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++    +  +F  + FL E R  Y    ++D++ +G    ++  +    +  
Sbjct: 336 AENETAMVIKRFRQMDPNFQIEPFLREMRE-YILPEVLDAYVKGDTETLKLWLSDAQFHV 394

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193
           +        +        ++ I  + I +A + E    I + IV    Q +    + K N
Sbjct: 395 YAALAKQYTTAGLKSDGRILDIRHVDISHARMLEP-GDIPVFIVTCRTQEVHVYRNAKTN 453

Query: 194 LLISSDPEIFGKVI 207
            L +   +    V 
Sbjct: 454 ELAAGMEDKVQLVT 467


>gi|224088015|ref|XP_002196182.1| PREDICTED: similar to translocase of inner mitochondrial membrane
           Tim44, partial [Taeniopygia guttata]
          Length = 365

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 6/114 (5%)

Query: 53  KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
              +   I   +       D I  LF   T +++V+ +I+ V   FD   FL +     +
Sbjct: 255 DESDNAFIRASRAVTDRVTDLIGGLFSK-TEMSEVLTEILKVDPSFDKDRFLKQCER--D 311

Query: 113 AI---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163
            I   +++   G++  ++       Y      +   K+      S ++ ID++ 
Sbjct: 312 IIPNVLEALISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNID 365


>gi|121702021|ref|XP_001269275.1| mitochondrial inner membrane translocase subunit TIM44, putative
           [Aspergillus clavatus NRRL 1]
 gi|119397418|gb|EAW07849.1| mitochondrial inner membrane translocase subunit TIM44, putative
           [Aspergillus clavatus NRRL 1]
          Length = 512

 Score = 45.6 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 58/166 (34%), Gaps = 20/166 (12%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                 +V++    +  +F  + FL E R  Y    ++D++ +G V  ++  +    +  
Sbjct: 348 AENETAQVIKKFREMDPNFQMESFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFHV 406

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193
           +        +        ++ I  + + NA + E    I + +V    Q +    + K  
Sbjct: 407 YAALSKQYTTAGLKSDGRILDIRGVDVSNARMLEP-GEIPVFVVTCRTQEVHVYRNVKSG 465

Query: 194 LLISSDPEIFGKVIDIWTFVRNIP-----PSNPN---WVLISTKLG 231
            L +   +    V    T+   +       +NP    W LI  +  
Sbjct: 466 ELAAGMEDKVQLV----TYAIGLTRIPEDVNNPETRGWRLIELQKA 507


>gi|322693819|gb|EFY85667.1| mitochondrial inner membrane translocase subunit TIM44, putative
           [Metarhizium acridum CQMa 102]
          Length = 538

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++   S+   F  + FL E R  Y    ++D++ +G    ++  + +  +  
Sbjct: 374 AENETALVIKKFRSMDPAFQVEPFLQELRE-YILPEVLDAYVKGDTETLKLWLSAAQFSV 432

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193
           +                 ++ I ++ I+ A + +    + + I+    Q +    + K N
Sbjct: 433 YEALTKQYLQAGMKSDGRILDIRNVDILRARMLDP-GEVPVFIITCRTQEVHVYRNAKTN 491

Query: 194 LLISSDPEIFGKVI 207
            L +   +    V 
Sbjct: 492 ELAAGMEDKVQLVT 505


>gi|145614776|ref|XP_001414030.1| hypothetical protein MGG_11419 [Magnaporthe oryzae 70-15]
 gi|145021662|gb|EDK05791.1| hypothetical protein MGG_11419 [Magnaporthe oryzae 70-15]
          Length = 551

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 10/135 (7%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++ +  +   F  + FLN+ R  Y    ++D++ +G V  ++  +    +  
Sbjct: 387 AENETAMVIKKLRQMDPAFQLEPFLNDLRE-YILPEVLDAYVKGDVETLKLWLSEAQFSV 445

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASYD-KD 192
           +                 +V I  + I+ A +    +     IT R   Q +    + K 
Sbjct: 446 YEALTKQYLQMGMKSDGKIVDIRGVDILKARLLEPGDIPVFIITCR--TQEVHVYRNAKS 503

Query: 193 NLLISSDPEIFGKVI 207
             L +   +    V 
Sbjct: 504 GELAAGMEDRVQLVT 518


>gi|297265563|ref|XP_002808078.1| PREDICTED: LOW QUALITY PROTEIN: 39S ribosomal protein L45,
           mitochondrial-like [Macaca mulatta]
          Length = 497

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 12/144 (8%)

Query: 88  MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
           +R I     +F  KDF  +A+N +              +  LV    + D    +     
Sbjct: 313 IRRIKDYDANFKIKDFPEKAKNIFIEAHLCLNNSDHDRLYTLVTEHCFPDMTWDIK---- 368

Query: 148 NEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSDP 200
             K V+ S V       +  +   +   + N    +T+ +  +   A YD+   L+    
Sbjct: 369 -YKTVRXSFVESLEPSHVVQVHCSSIMNQGNVYGQVTVCMHTRQTLAIYDRFGRLMYGQE 427

Query: 201 EIFGKVIDIWTFVRNIPPSNPNWV 224
           ++   V++   F + +     +W 
Sbjct: 428 DVPKDVLEYVVFEKQLTNPYGSWR 451


>gi|254582268|ref|XP_002497119.1| ZYRO0D15840p [Zygosaccharomyces rouxii]
 gi|238940011|emb|CAR28186.1| ZYRO0D15840p [Zygosaccharomyces rouxii]
          Length = 407

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 48/142 (33%), Gaps = 8/142 (5%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137
             T   KV+     +   F  + F  + R+ Y    +++++ +G    ++K      +  
Sbjct: 242 AETETAKVIGQFKLLDPSFTSEGFTRQLRD-YVIPEVLEAYAKGDEKTLKKWFSEAPFNV 300

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193
           +       +  +    S ++ I  + I++A +      I + IV    Q I      K  
Sbjct: 301 YAAQQKFFRDQKLFADSRILDIRGVDIVSAKLLPPQ-DIPVLIVGCRAQEIQLYRSIKSG 359

Query: 194 LLISSDPEIFGKVIDIWTFVRN 215
            + +              F R+
Sbjct: 360 EVAAGHESNILMSSYAMVFTRD 381


>gi|222110012|ref|YP_002552276.1| import inner membrane translocase subunit tim44 [Acidovorax ebreus
           TPSY]
 gi|221729456|gb|ACM32276.1| import inner membrane translocase subunit Tim44 [Acidovorax ebreus
           TPSY]
          Length = 335

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/137 (8%), Positives = 46/137 (33%), Gaps = 16/137 (11%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS-NEKNV--K 153
            FD + FL+ A+ ++  +  ++    V  +  ++   +  +    L+ R+S        +
Sbjct: 210 GFDTEGFLSAAKRNFTTLQAAWDRSDVATLRSMMTDSMVDEIRTQLNERESHRGDQQPNQ 269

Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213
           + ++ + + +++      +    ++               ++            ++W   
Sbjct: 270 TDVIML-EAQLLGIEDLGDGYMASVEFS-----------GMIREEPSAGPSPFREVWNMT 317

Query: 214 RNIPPSNPNWVLISTKL 230
           +        W++   + 
Sbjct: 318 KP-KNGASGWLVAGVQA 333


>gi|307185468|gb|EFN71468.1| Uncharacterized protein C2orf47-like protein, mitochondrial
           [Camponotus floridanus]
          Length = 178

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 22/56 (39%)

Query: 88  MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
           +R    +  +FD  +FL  A+ +   I  +       +++ LV   + +     + 
Sbjct: 25  LRIAPYIDKEFDIAEFLKGAKYATAIISKALTNKNYDSLQGLVTEDMIEILRAKIE 80


>gi|15600721|ref|NP_254215.1| hypothetical protein PA5528 [Pseudomonas aeruginosa PAO1]
 gi|107104630|ref|ZP_01368548.1| hypothetical protein PaerPA_01005709 [Pseudomonas aeruginosa PACS2]
 gi|254237792|ref|ZP_04931115.1| hypothetical protein PACG_03888 [Pseudomonas aeruginosa C3719]
 gi|254243078|ref|ZP_04936400.1| hypothetical protein PA2G_03868 [Pseudomonas aeruginosa 2192]
 gi|9951866|gb|AAG08913.1|AE004965_5 hypothetical protein PA5528 [Pseudomonas aeruginosa PAO1]
 gi|126169723|gb|EAZ55234.1| hypothetical protein PACG_03888 [Pseudomonas aeruginosa C3719]
 gi|126196456|gb|EAZ60519.1| hypothetical protein PA2G_03868 [Pseudomonas aeruginosa 2192]
          Length = 284

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 68/221 (30%), Gaps = 35/221 (15%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              ILL A +  F+  +                          ++++      G    + 
Sbjct: 98  MLDILLIALVA-FIAFR-------------------FIAARRRQQNQGQPAMAGHAPMQR 137

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
            + +   +F            +++  + F+ + F+  AR  + ++   +   ++  I + 
Sbjct: 138 EMPAQAPIFGGAAAAAAAPSPVINAPSWFNEERFVGAAREHFMSLQQHWDANEMDKIAEF 197

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V  ++ Q        R       +S+ +    +++     + +    T+   G   ++ +
Sbjct: 198 VTPQMLQWLKQ---ERAEIGDAYQSTYIDNLVVQLDGVDDQADKTIATLTFSGVSKTSRF 254

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D+                + W   R    + P W++   + 
Sbjct: 255 DQGEA-----------FSESWRMERAQGENQP-WLVAGIRQ 283


>gi|134076790|emb|CAK39845.1| unnamed protein product [Aspergillus niger]
          Length = 508

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 55/165 (33%), Gaps = 18/165 (10%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                 +V++    +  +F  + FL E R  Y    ++D++ +G V  ++  +    +  
Sbjct: 344 AENETARVIKKFREMDPNFQMEAFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFHV 402

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYD-KDNL 194
           +        +        ++ +  + + +A +    +     +    Q +    + K   
Sbjct: 403 YAALAQQYTTAGLKSDGRILDVRGVDVSHARMLEPGDIPVFVVTCRSQEVHVYKNVKTGE 462

Query: 195 LISSDPEIFGKVIDIWTFVRNIP-----PSNPN---WVLISTKLG 231
           L +   +    V    T+   +       +NP    W LI  +  
Sbjct: 463 LAAGMEDKVQLV----TYAIGLTRIPEDVNNPETRGWRLIELQKA 503


>gi|154287202|ref|XP_001544396.1| hypothetical protein HCAG_01443 [Ajellomyces capsulatus NAm1]
 gi|150408037|gb|EDN03578.1| hypothetical protein HCAG_01443 [Ajellomyces capsulatus NAm1]
          Length = 520

 Score = 45.3 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++    +   F  + FL E R  Y    ++D++ +G V  ++  +    Y  
Sbjct: 356 AENETAMVIKKFREMDPSFQIEPFLRELRE-YMLPEVLDAYVKGDVETLKLWLSEAQYNV 414

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
           +        +        ++ I  + I +A +
Sbjct: 415 YAALAQQYTTAGLKSDGRILDIRHVDISHARM 446


>gi|317030304|ref|XP_001392284.2| TIM23 translocase complex subunit Tim44 [Aspergillus niger CBS
           513.88]
          Length = 514

 Score = 45.3 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 55/165 (33%), Gaps = 18/165 (10%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                 +V++    +  +F  + FL E R  Y    ++D++ +G V  ++  +    +  
Sbjct: 350 AENETARVIKKFREMDPNFQMEAFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFHV 408

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYD-KDNL 194
           +        +        ++ +  + + +A +    +     +    Q +    + K   
Sbjct: 409 YAALAQQYTTAGLKSDGRILDVRGVDVSHARMLEPGDIPVFVVTCRSQEVHVYKNVKTGE 468

Query: 195 LISSDPEIFGKVIDIWTFVRNIP-----PSNPN---WVLISTKLG 231
           L +   +    V    T+   +       +NP    W LI  +  
Sbjct: 469 LAAGMEDKVQLV----TYAIGLTRIPEDVNNPETRGWRLIELQKA 509


>gi|225559726|gb|EEH08008.1| mitochondrial inner membrane translocase subunit TIM44 [Ajellomyces
           capsulatus G186AR]
          Length = 541

 Score = 45.3 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++    +   F  + FL E R  Y    ++D++ +G V  ++  +    Y  
Sbjct: 377 AENETAMVIKKFREMDPSFQIEPFLRELRE-YMLPEVLDAYVKGDVETLKLWLSEAQYNV 435

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
           +        +        ++ I  + I +A +
Sbjct: 436 YAALAQQYTTAGLKSDGRILDIRHVDISHARM 467


>gi|121593290|ref|YP_985186.1| import inner membrane translocase subunit Tim44 [Acidovorax sp.
           JS42]
 gi|120605370|gb|ABM41110.1| import inner membrane translocase, subunit Tim44 [Acidovorax sp.
           JS42]
          Length = 335

 Score = 45.3 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/137 (8%), Positives = 46/137 (33%), Gaps = 16/137 (11%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS-NEKNV--K 153
            FD + FL+ A+ ++  +  ++    V  +  ++   +  +    L+ R+S        +
Sbjct: 210 GFDTEGFLSAAKRNFTTLQAAWDRSDVATLRSMMTDSMVDEIRTQLNERESHRGDQQPNQ 269

Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213
           + ++ + + +++      +    ++               ++            ++W   
Sbjct: 270 TDVIML-EAQLLGIEDLGDGYMASVEFS-----------GMIREEPSAGPSPFREVWNMT 317

Query: 214 RNIPPSNPNWVLISTKL 230
           +        W++   + 
Sbjct: 318 KP-KNGASGWLVAGVQA 333


>gi|240276404|gb|EER39916.1| mitochondrial inner membrane translocase subunit TIM44 [Ajellomyces
           capsulatus H143]
 gi|325089734|gb|EGC43044.1| mitochondrial inner membrane translocase subunit TIM44 [Ajellomyces
           capsulatus H88]
          Length = 541

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++    +   F  + FL E R  Y    ++D++ +G V  ++  +    Y  
Sbjct: 377 AENETAMVIKKFREMDPSFQIEPFLRELRE-YMLPEVLDAYVKGDVETLKLWLSEAQYNV 435

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
           +        +        ++ I  + I +A +
Sbjct: 436 YAALAQQYTTAGLKSDGRILDIRHVDISHARM 467


>gi|322387219|ref|ZP_08060829.1| NinF protein [Streptococcus infantis ATCC 700779]
 gi|321141748|gb|EFX37243.1| NinF protein [Streptococcus infantis ATCC 700779]
          Length = 246

 Score = 44.9 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 51/144 (35%), Gaps = 12/144 (8%)

Query: 86  KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145
           + +  +     +FD   F + A+  Y  +  ++ +   + +  L    +Y   +  L   
Sbjct: 53  QAIDRLRYYDPNFDASAFTSWAKEVYIQLQAAWTKKDWNLVRSLESVSLYTQHSAQLEDY 112

Query: 146 KSNEKNVKSSLVGIDDMKIINASIE-ENTVYITIRIVGQFIS-ASYDKDNLLISSDPEIF 203
             ++       V +++++I + +   +    + + +          DK   +I  DP   
Sbjct: 113 IQSQTTNVLERVYVENVRIKDFNSNPDGNDTLVVILSSTLRDYVIDDKTRKVIEGDP--- 169

Query: 204 GKVIDIWT-----FVRNIPPSNPN 222
               D++T     F+R       N
Sbjct: 170 --QQDLFTVYQMNFIRKHGSQTEN 191


>gi|322711640|gb|EFZ03213.1| mitochondrial inner membrane translocase subunit TIM44 [Metarhizium
           anisopliae ARSEF 23]
          Length = 538

 Score = 44.9 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++   S+   F  + FL E R  Y    ++D++ +G    ++  + +  +  
Sbjct: 374 AENETALVIKKFRSMDPAFQVEPFLQELRE-YILPEVLDAYVKGDTETLKLWLSAAQFSV 432

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193
           +                 ++ I ++ I+ A + +    + + I+    Q +    + K N
Sbjct: 433 YEALTKQYLQAGMKSDGRILDIRNVDILRARMLDP-GEVPVFIITCRTQEVHVYRNAKSN 491

Query: 194 LLISSDPEIFGKVI 207
            L +   +    V 
Sbjct: 492 ELAAGMEDKVQLVT 505


>gi|293399808|ref|ZP_06643954.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306208|gb|EFE47451.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 249

 Score = 44.9 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 55/138 (39%), Gaps = 16/138 (11%)

Query: 86  KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL--- 142
           K++++I  +   +D           + A+ +++    +  ++  +   + +++   L   
Sbjct: 77  KLLKEIDDLDAIWDEDHIYERVEEIFYAVQNAWTTKSLEELQPYLSDALMENWKTKLDWM 136

Query: 143 STRKSNE-----KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS-YDKDNLLI 196
             R+        + +  S+VGI D       I++    +   I G+ I  + ++ D  L+
Sbjct: 137 DIRRERNILENIQLLSRSIVGIYDA------IDDRKDMVWFYIEGKMIDYTIHEDDGSLL 190

Query: 197 SSDPEIFGKVIDIWTFVR 214
             D +     ++ W  +R
Sbjct: 191 DGDKQAHS-FVEFWKLIR 207


>gi|309799759|ref|ZP_07693972.1| putative transporter [Streptococcus infantis SK1302]
 gi|308116608|gb|EFO54071.1| putative transporter [Streptococcus infantis SK1302]
          Length = 305

 Score = 44.9 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 48/143 (33%), Gaps = 12/143 (8%)

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
            +  +     +FD   F +  +  Y  +  ++ +   + +  L  + +Y   +  L    
Sbjct: 113 AVSRVKHGDPNFDADTFASWVKEVYIQLQAAWTKKDWNLVRSLESTSLYSQHSTQLEDHI 172

Query: 147 SNEKNVKSSLVGIDDMKIIN-ASIEENTVYITIRIVGQFIS-ASYDKDNLLISSDPEIFG 204
             +       V +++++I +     +    + + +          D+   +I  DP    
Sbjct: 173 RAKTTNVLEKVYVENIRIKDFYENPDGNDTLVVILSSTLRDYIIEDQSKRVIEGDP---- 228

Query: 205 KVIDIWT-----FVRNIPPSNPN 222
              D++T     F+R       N
Sbjct: 229 -QEDLFTVYQMNFIRKHGSQTEN 250


>gi|302884408|ref|XP_003041100.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256721996|gb|EEU35387.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 504

 Score = 44.9 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 53/147 (36%), Gaps = 9/147 (6%)

Query: 67  KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVH 124
            +   D I   F        V++   ++   F  + FL E R  Y    ++D++ +G+  
Sbjct: 328 ARSITDRIAGFFAE-NETAMVIKKFRAMDPSFQVEPFLQELRE-YILPEVLDAYVKGETE 385

Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV--- 181
            ++  + +  Y  +                 ++ I ++ I+ A + +    + + I+   
Sbjct: 386 TLKLWLSAAQYSVYEALTKQYLQAGMKSDGKILDIRNVDILRARMLDP-GEVPVFIITCR 444

Query: 182 GQFISASYD-KDNLLISSDPEIFGKVI 207
            Q +    + K N L +   +    V 
Sbjct: 445 TQEVHVYRNAKTNELAAGMEDKVQLVT 471


>gi|46111759|ref|XP_382937.1| hypothetical protein FG02761.1 [Gibberella zeae PH-1]
          Length = 502

 Score = 44.9 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 8/134 (5%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++   S+   F  + FL E R  Y    ++D++ +G+   ++  + +  Y  
Sbjct: 338 AENETAMVIKKFRSMDPGFQTEPFLQELRE-YILPEVLDAYVKGETETLKLWLSAAQYSV 396

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193
           +                 ++ I ++ I+ A + +    + + IV    Q +    + K N
Sbjct: 397 YEALTKQYLQAGMKSDGKILDIRNVDILRARMLDP-GEVPVFIVTCRTQEVHVYRNAKTN 455

Query: 194 LLISSDPEIFGKVI 207
            L +   +    V 
Sbjct: 456 ELAAGMEDKVQLVT 469


>gi|324518944|gb|ADY47245.1| 39S ribosomal protein L45 [Ascaris suum]
          Length = 365

 Score = 44.9 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 9/134 (6%)

Query: 98  FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST----RKSNEKNVK 153
           FDPK F   A + Y     +        + K +    +      +       +  E+   
Sbjct: 188 FDPKLFGATADSIYVEAHKALMARDKVMLHKYITEHAFVKMWPDVENGSVVWEMVEQKEP 247

Query: 154 SSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWT 211
           S +V I      ++  +   +   +T+R+      A YDK   LI         V++   
Sbjct: 248 SRVVAIR---CSDSPYKSGNDIAQLTVRMHTVQKLAIYDKFGRLILGSEVEPKAVVEYVV 304

Query: 212 FVRNIPPSNPNWVL 225
           F  +I   +  W L
Sbjct: 305 FENHIASLDGAWRL 318


>gi|298706514|emb|CBJ29484.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 246

 Score = 44.9 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 44/153 (28%), Gaps = 13/153 (8%)

Query: 91  IVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNE- 149
           I     DF    F   A   ++   ++  +G   A+  L    +Y      + + KS   
Sbjct: 70  IQKHVPDFHVSKFPPVANQIFKDFFEAHRKGDTRALAGLTTEELYASLKGEIKSSKSRGA 129

Query: 150 KNVKSSLVGIDDMKII---------NASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
           +     LV   +   +         + S +E    +T R+  +      D     + +  
Sbjct: 130 QRAAFRLVDFKEPTTVLQMRVDRKKHISPKEGWGQVTCRLCSERQLLVVDAKGNEVEAKA 189

Query: 201 EIFGKVID---IWTFVRNIPPSNPNWVLISTKL 230
           +          +  F      S   W L   + 
Sbjct: 190 DEDATTAQNVTVGVFEAFFGDSAGRWRLALVQE 222


>gi|116053679|ref|YP_794006.1| hypothetical protein PA14_72930 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296392393|ref|ZP_06881868.1| hypothetical protein PaerPAb_29757 [Pseudomonas aeruginosa PAb1]
 gi|115588900|gb|ABJ14915.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 285

 Score = 44.9 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 68/221 (30%), Gaps = 34/221 (15%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
              ILL A +  F+  +      ++   ++         +   +R+      +  G    
Sbjct: 98  MLDILLIALVA-FIAFRFIAA--RR--RQQNQGQPAMAGHAPMQREMPAQAPIFGGATAA 152

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
              + + +    +               F+ + F+  AR  + ++   +   ++  I + 
Sbjct: 153 AAVAPSPVINAPSW--------------FNEERFVGAAREHFMSLQQHWDANEMDKIAEF 198

Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
           V  ++ Q        R       +S+ +    +++     + +    T+   G   ++ +
Sbjct: 199 VTPQMLQWLKQ---ERAEIGDAYQSTYIDNLVVQLDGVDDQADKTIATLTFSGVSKTSRF 255

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           D+                + W   R    + P W++   + 
Sbjct: 256 DQGEA-----------FSESWRMERAQGENQP-WLVAGIRQ 284


>gi|324518594|gb|ADY47149.1| 39S ribosomal protein L45 [Ascaris suum]
          Length = 373

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 9/134 (6%)

Query: 98  FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST----RKSNEKNVK 153
           FDPK F   A + Y     +        + K +    +      +       +  E+   
Sbjct: 188 FDPKLFGATADSIYVEAHKALMARDKVMLHKYITEHAFVKMWPDVENGSVVWEMVEQKEP 247

Query: 154 SSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWT 211
           S +V I      ++  +   +   +T+R+      A YDK   LI         V++   
Sbjct: 248 SRVVAIR---CSDSPYKSGNDIAQLTVRMHTVQKLAIYDKFGRLILGSEVEPKAVVEYVV 304

Query: 212 FVRNIPPSNPNWVL 225
           F  +I   +  W L
Sbjct: 305 FENHIASLDGAWRL 318


>gi|226945262|ref|YP_002800335.1| hypothetical protein Avin_31970 [Azotobacter vinelandii DJ]
 gi|226720189|gb|ACO79360.1| conserved hypothetical protein [Azotobacter vinelandii DJ]
          Length = 104

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 37/92 (40%), Gaps = 8/92 (8%)

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN--ASIEENTVYITIRIVGQ 183
           + +L+D   Y  F  +L+ R      ++ +  GI  +++ +        +  I    V +
Sbjct: 13  LRELLDDDSYAAFQKTLAERLDAGDVIEGT-GGIRKVRVASKGHGKRGGSRVIYYHFVSE 71

Query: 184 -----FISASYDKDNLLISSDPEIFGKVIDIW 210
                 +    ++ + L + + +   ++I+ W
Sbjct: 72  SQIALLLIYPKNEKDDLTADERKALKRIIETW 103


>gi|255940336|ref|XP_002560937.1| Pc16g06000 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585560|emb|CAP93270.1| Pc16g06000 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 506

 Score = 44.5 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 54/165 (32%), Gaps = 18/165 (10%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++    +  +F  + FL E R+ Y    ++D++ +G V  ++  +    +  
Sbjct: 342 AENETAMVIKKFREIDPNFQMEPFLREMRD-YMLPEVLDAYVKGDVETLKLWLSDAQFHV 400

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYD-KDNL 194
           +        +        ++ I  + I +A I    +     +    Q I      K   
Sbjct: 401 YAALAKQYTTAGLKSDGRILDIRGVDISHARILDPGDIPVFVVTCRTQEIHVYRKIKTGE 460

Query: 195 LISSDPEIFGKVIDIWTFVRNIP-----PSNPN---WVLISTKLG 231
           L +   +    V    T+   +       +NP    W LI  +  
Sbjct: 461 LAAGTDDKVQLV----TYAIGLTRIPDEVNNPETRGWRLIELQKA 501


>gi|148667637|gb|EDL00054.1| mCG113908 [Mus musculus]
          Length = 295

 Score = 44.5 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 16/122 (13%)

Query: 28  RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87
           R +LG+    E P +              R   T  + +++     I  +      +N V
Sbjct: 77  RSLLGR---VEHPPALA-----SLPASPSRSYSTEEQPQQRQRTRMI--ILGFSNPINWV 126

Query: 88  MRDIVSV------YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
              I +         +F   +F   A+ ++  +     + K   +E+LV   V Q   + 
Sbjct: 127 RTRIYAFLIWAYFDKEFSIAEFSEGAKQAFAYVSKLLSQCKFDLLEELVAKEVLQILKEK 186

Query: 142 LS 143
           ++
Sbjct: 187 VT 188


>gi|50307591|ref|XP_453775.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642909|emb|CAH00871.1| KLLA0D16214p [Kluyveromyces lactis]
          Length = 418

 Score = 44.5 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 47/146 (32%), Gaps = 6/146 (4%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137
             T   +V      +   F+ +DF    R  Y    I++++ +G    +++      Y  
Sbjct: 253 AETESARVYGQFKMMDPTFNTEDFTKHLRE-YIIPEILEAYVKGDEAVLKQWFSEAPYNV 311

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQFISASYD-KDNL 194
           +       +  E      ++ I  ++I++A +    +   + +    Q I      K   
Sbjct: 312 YAAQQKQFREQELFADGKILDIRGVEIVSAKLLPPQDIPVLVVGCRAQEIHLYRKAKTGE 371

Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSN 220
           + +              F R+    +
Sbjct: 372 IAAGAESSILMSSYAMVFTRDPETVD 397


>gi|145587094|ref|NP_001074650.1| hypothetical protein LOC68115 precursor [Mus musculus]
 gi|81896109|sp|Q8BHE8|CB047_MOUSE RecName: Full=Uncharacterized protein C2orf47 homolog,
           mitochondrial; Flags: Precursor
 gi|26339158|dbj|BAC33250.1| unnamed protein product [Mus musculus]
 gi|26347797|dbj|BAC37547.1| unnamed protein product [Mus musculus]
 gi|48735412|gb|AAH71241.1| RIKEN cDNA 9430016H08 gene [Mus musculus]
          Length = 291

 Score = 44.5 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 16/122 (13%)

Query: 28  RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87
           R +LG+    E P +              R   T  + +++     I  +      +N V
Sbjct: 73  RSLLGR---VEHPPALA-----SLPASPSRSYSTEEQPQQRQRTRMI--ILGFSNPINWV 122

Query: 88  MRDIVSV------YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
              I +         +F   +F   A+ ++  +     + K   +E+LV   V Q   + 
Sbjct: 123 RTRIYAFLIWAYFDKEFSIAEFSEGAKQAFAYVSKLLSQCKFDLLEELVAKEVLQILKEK 182

Query: 142 LS 143
           ++
Sbjct: 183 VT 184


>gi|332528579|ref|ZP_08404561.1| import inner membrane translocase, subunit [Hylemonella gracilis
           ATCC 19624]
 gi|332041895|gb|EGI78239.1| import inner membrane translocase, subunit [Hylemonella gracilis
           ATCC 19624]
          Length = 247

 Score = 44.1 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/138 (8%), Positives = 48/138 (34%), Gaps = 19/138 (13%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK--SNEKNVKS 154
            FD + FL  A++++  +  ++ +  +  +  ++   +  + +  L+ R+  S+ +   +
Sbjct: 123 GFDVESFLKVAKSNFIHLQAAWDKADMVTLRSMMTDEMLAEISAQLAERERLSSGEPNLT 182

Query: 155 SLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW--TF 212
            +  +   +++           ++               ++            ++W  T 
Sbjct: 183 EVQMLQ-AQLLGIEDLGGEYMASVEFS-----------GMVREDRHSGPSPFREVWNMTK 230

Query: 213 VRNIPPSNPNWVLISTKL 230
            R+       W++   + 
Sbjct: 231 PRD-GSRG--WLVAGVQA 245


>gi|324516912|gb|ADY46671.1| 39S ribosomal protein L45 [Ascaris suum]
 gi|324517061|gb|ADY46715.1| 39S ribosomal protein L45 [Ascaris suum]
 gi|324517081|gb|ADY46721.1| 39S ribosomal protein L45 [Ascaris suum]
          Length = 379

 Score = 44.1 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 9/134 (6%)

Query: 98  FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST----RKSNEKNVK 153
           FDPK F   A + Y     +        + K +    +      +       +  E+   
Sbjct: 188 FDPKLFGATADSIYVEAHKALMARDKVMLHKYITEHAFVKMWPDVENGSVVWEMVEQKEP 247

Query: 154 SSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWT 211
           S +V I      ++  +   +   +T+R+      A YDK   LI         V++   
Sbjct: 248 SRVVAIR---CSDSPYKSGNDIAQLTVRMHTVQKLAIYDKFGRLILGSEVEPKAVVEYVV 304

Query: 212 FVRNIPPSNPNWVL 225
           F  +I   +  W L
Sbjct: 305 FENHIASLDGAWRL 318


>gi|303324399|ref|XP_003072187.1| Tim44-like domain containing protein [Coccidioides posadasii C735
           delta SOWgp]
 gi|240111897|gb|EER30042.1| Tim44-like domain containing protein [Coccidioides posadasii C735
           delta SOWgp]
 gi|320037223|gb|EFW19161.1| mitochondrial import inner membrane translocase subunit TIM44
           [Coccidioides posadasii str. Silveira]
          Length = 533

 Score = 44.1 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 8/134 (5%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++    +  +F  + FL E R  Y    ++D++ +G    ++  +    +  
Sbjct: 369 AENETAMVIKKFRQMDPNFQIEPFLREMRE-YILPEVLDAYVKGDAETLKLWLSDAQFHV 427

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193
           +        +        ++ I  + I +A + E    I + IV    Q +    + K N
Sbjct: 428 YAALAKQYTTAGLKSDGRILDIRHVDISHARMLEP-GDIPVFIVTCRTQEVHVYRNAKTN 486

Query: 194 LLISSDPEIFGKVI 207
            L +   +    V 
Sbjct: 487 ELAAGMEDKVQLVT 500


>gi|119173698|ref|XP_001239255.1| hypothetical protein CIMG_10277 [Coccidioides immitis RS]
          Length = 533

 Score = 44.1 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 8/134 (5%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++    +  +F  + FL E R  Y    ++D++ +G    ++  +    +  
Sbjct: 369 AENETAMVIKKFRQMDPNFQIEPFLREMRE-YILPEVLDAYVKGDAETLKLWLSDAQFHV 427

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193
           +        +        ++ I  + I +A + E    I + IV    Q +    + K N
Sbjct: 428 YAALAKQYTTAGLKSDGRILDIRHVDISHARMLEP-GDIPVFIVTCRTQEVHVYRNAKTN 486

Query: 194 LLISSDPEIFGKVI 207
            L +   +    V 
Sbjct: 487 ELAAGMEDKVQLVT 500


>gi|307703104|ref|ZP_07640051.1| hypothetical protein SMSK23_0938 [Streptococcus oralis ATCC 35037]
 gi|307623497|gb|EFO02487.1| hypothetical protein SMSK23_0938 [Streptococcus oralis ATCC 35037]
          Length = 234

 Score = 44.1 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 49/139 (35%), Gaps = 12/139 (8%)

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
            +  +     +FD   F++  +  Y  +  ++ E   +++  L  + +Y   +  L    
Sbjct: 42  AISRVKYGDPNFDANAFISWVKEVYLKLQVAWTEKNWNSVRALESTSLYSQHSTQLEDHI 101

Query: 147 SNEKNVKSSLVGIDDMKIIN-ASIEENTVYITIRIVGQFISASYDKDN-LLISSDPEIFG 204
             +       V I++++I       +    + + +         D +   +I  DP+   
Sbjct: 102 RAKTTNVLEKVCIENVRIKEFIENPDGNDTLVVILSSTLRDYVIDDETRRVIEGDPK--- 158

Query: 205 KVIDIWT-----FVRNIPP 218
              D++T     F+R    
Sbjct: 159 --KDLFTVYQLNFIRQHGS 175


>gi|306828965|ref|ZP_07462157.1| NinF protein [Streptococcus mitis ATCC 6249]
 gi|304429143|gb|EFM32231.1| NinF protein [Streptococcus mitis ATCC 6249]
          Length = 238

 Score = 44.1 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 49/139 (35%), Gaps = 12/139 (8%)

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
            +  +     +FD   F++  +  Y  +  ++ E   +++  L  + +Y   +  L    
Sbjct: 46  AISRVKYGDPNFDANAFISWVKEVYLKLQVAWTEKNWNSVRALESTSLYSQHSTQLEDHI 105

Query: 147 SNEKNVKSSLVGIDDMKIIN-ASIEENTVYITIRIVGQFISASYDKDN-LLISSDPEIFG 204
             +       V I++++I       +    + + +         D +   +I  DP+   
Sbjct: 106 RAKTTNVLEKVCIENVRIKEFIENPDGNDTLVVILSSTLRDYVIDDETRRVIEGDPK--- 162

Query: 205 KVIDIWT-----FVRNIPP 218
              D++T     F+R    
Sbjct: 163 --KDLFTVYQLNFIRQHGS 179


>gi|293364855|ref|ZP_06611572.1| hypothetical protein HMPREF8579_0701 [Streptococcus oralis ATCC
           35037]
 gi|291316305|gb|EFE56741.1| hypothetical protein HMPREF8579_0701 [Streptococcus oralis ATCC
           35037]
          Length = 318

 Score = 44.1 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 49/139 (35%), Gaps = 12/139 (8%)

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
            +  +     +FD   F++  +  Y  +  ++ E   +++  L  + +Y   +  L    
Sbjct: 126 AISRVKYGDPNFDANAFISWVKEVYLKLQVAWTEKNWNSVRALESTSLYSQHSTQLEDHI 185

Query: 147 SNEKNVKSSLVGIDDMKIIN-ASIEENTVYITIRIVGQFISASYDKDN-LLISSDPEIFG 204
             +       V I++++I       +    + + +         D +   +I  DP+   
Sbjct: 186 RAKTTNVLEKVCIENVRIKEFIENPDGNDTLVVILSSTLRDYVIDDETRRVIEGDPK--- 242

Query: 205 KVIDIWT-----FVRNIPP 218
              D++T     F+R    
Sbjct: 243 --KDLFTVYQLNFIRQHGS 259


>gi|224823518|ref|ZP_03696627.1| conserved hypothetical protein [Lutiella nitroferrum 2002]
 gi|224603973|gb|EEG10147.1| conserved hypothetical protein [Lutiella nitroferrum 2002]
          Length = 302

 Score = 44.1 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/194 (9%), Positives = 54/194 (27%), Gaps = 19/194 (9%)

Query: 37  NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT 96
             +            +           + +    + S     P           +  +  
Sbjct: 127 FRRKAGNPAGQLPQAAGVPNGMAQEAARFEPIPKIGSGFGTAPSYGGAPMAASSLARLPD 186

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
             +  +FL +A+ ++  +        +  I K +   +++     ++         +   
Sbjct: 187 GTETPNFLRQAKATFLHLQSLNTPDSLEEIRKYLTPDLFEALRADIAGNDDVADFPQL-- 244

Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
               D ++I A  E      ++R  G  +S + +                 + W +V++ 
Sbjct: 245 ----DCQLIEAVEEGGRYIASVRFSGS-VSETVNA----------AAVPFGETWHYVKD- 288

Query: 217 PPSNPNWVLISTKL 230
             +   W+L   + 
Sbjct: 289 -KNGSRWLLAGIQQ 301


>gi|224086853|ref|XP_002186709.1| PREDICTED: hypothetical protein, partial [Taeniopygia guttata]
          Length = 182

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 15/117 (12%)

Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV-GIDDMKIINASIEENT 173
             +F +     +  LV  R Y D       R +  K ++   V  ++  ++++   E   
Sbjct: 37  QLAFNK---QKLHSLVTERCYPDMV-----RGNRYKTIRWRFVESLEPPRVVHVRCEGIL 88

Query: 174 ------VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
                   +T+R+  + I A YD+   L+    EI   V++   F R +      W 
Sbjct: 89  NRGNLYGQVTVRMHSRQILAIYDRFGRLMYGGEEIPKDVLEYVVFERYLVNPYGTWR 145


>gi|327404559|ref|YP_004345397.1| hypothetical protein Fluta_2575 [Fluviicola taffensis DSM 16823]
 gi|327320067|gb|AEA44559.1| hypothetical protein Fluta_2575 [Fluviicola taffensis DSM 16823]
          Length = 483

 Score = 44.1 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 9/112 (8%)

Query: 105 NEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164
            +   S+ A+  ++ E  +  + K +   VYQ F       K   ++   S V I D+ +
Sbjct: 128 EKVSTSFMALQAAWEEQDLSKVRKWMSDGVYQRFTAQFIMMKQLTQSNTLSNVRIKDVSV 187

Query: 165 INASIEE--NTVYITIRIVGQ--FISASYDKDNLLISSDPEIFGKVIDIWTF 212
           ++   +    +  I+I       FIS  Y + N     D +      +IWTF
Sbjct: 188 MDIRTDGEYQSADISITFSMDDRFISEKYPELNESYKGDSD-----TEIWTF 234


>gi|45187755|ref|NP_983978.1| ADL118Cp [Ashbya gossypii ATCC 10895]
 gi|44982516|gb|AAS51802.1| ADL118Cp [Ashbya gossypii ATCC 10895]
          Length = 418

 Score = 43.7 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 43/129 (33%), Gaps = 6/129 (4%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137
             T   +V      +   F+ ++F    R  Y    +++++ +G    +++      Y  
Sbjct: 253 AETESARVFAQFKLLDPTFNTEEFTKHLRE-YIIPEVLEAYVKGDEQVLKQWFSEAPYNV 311

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQFISASYDK-DNL 194
           ++      +  E      ++ I  ++II+A +    +   I +    Q I          
Sbjct: 312 YSAQQKQIRQQELFADGRILDIRGVEIISAKLLPPQDVPAIVVGCRAQEIHLFRKATTGE 371

Query: 195 LISSDPEIF 203
           + +      
Sbjct: 372 IAAGHESNI 380


>gi|242767716|ref|XP_002341423.1| mitochondrial inner membrane translocase subunit TIM44, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218724619|gb|EED24036.1| mitochondrial inner membrane translocase subunit TIM44, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 507

 Score = 43.7 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 55/165 (33%), Gaps = 6/165 (3%)

Query: 48  KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107
           + +FS +D              ++      F       +V++    +   F  + FL E 
Sbjct: 311 QRLFSLKDTYNESENPLISTARSISDRVAGFFAENETARVIKKFREMDPSFQLEPFLREM 370

Query: 108 RNSY--EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165
           R  Y    ++D++ +G +  ++  +    +  ++       +        ++ I  + I 
Sbjct: 371 RE-YILPEVLDAYVKGDIETLKLWLSDAQFSVYSALAQQYTTLGMKSDGRILDIRGVDIA 429

Query: 166 NASIE--ENTVYITIRIVGQFISASYD-KDNLLISSDPEIFGKVI 207
           NA +    +     +    Q +    + K N L +   +    V 
Sbjct: 430 NARMLEPGDIPVFVVTCRTQEVHVYRNAKTNELAAGMEDRVQLVT 474


>gi|115391699|ref|XP_001213354.1| hypothetical protein ATEG_04176 [Aspergillus terreus NIH2624]
 gi|114194278|gb|EAU35978.1| hypothetical protein ATEG_04176 [Aspergillus terreus NIH2624]
          Length = 501

 Score = 43.7 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 54/165 (32%), Gaps = 18/165 (10%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
                  V++    +  +F  + FL E R  Y    ++D++ +G V  ++  +    +  
Sbjct: 337 AENETAMVIKKFREMDPNFQMESFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFHV 395

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYD-KDNL 194
           +        +        ++ I  + + +A +    +     +    Q +    + K   
Sbjct: 396 YAALAQQYTTAGLKSDGRILDIRGVDVSHARMLEPGDIPVFVVTCRTQEVHVYKNTKTGE 455

Query: 195 LISSDPEIFGKVIDIWTFVRNIP-----PSNPN---WVLISTKLG 231
           L +   +    V    T+   +       +NP    W LI  +  
Sbjct: 456 LAAGMEDKVQLV----TYAIGLTRIPEDVNNPETRGWRLIELQKA 496


>gi|312078188|ref|XP_003141630.1| ribosomal protein L45 [Loa loa]
 gi|307763207|gb|EFO22441.1| ribosomal protein L45 [Loa loa]
          Length = 388

 Score = 43.7 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 7/145 (4%)

Query: 87  VMRDIVSV--YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST 144
            M+ I     + +F  K F   A   Y     +       A++K +    +      +  
Sbjct: 197 GMKRIRKRKGFENFSVKTFPATADEIYIEAHRALMTRDKTALQKYITEAAFGKMWPDVEN 256

Query: 145 ----RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
                +  +    S +V +      + S   +   I +R+      A YD+   LI    
Sbjct: 257 GSVIWELIKHIEPSRVVSVRCADFPHQS-GNDIAQIIVRMYTMQKIALYDRFGRLILGTE 315

Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225
           +    V++   F  +I   +  W L
Sbjct: 316 QEAKPVLEYVVFENHIASFDGIWRL 340


>gi|260219921|emb|CBA26937.1| hypothetical protein Csp_G39130 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 263

 Score = 43.3 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 92  VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151
            ++  DFD   F   A+ ++  +  ++  G +  I +     ++ +     + R++    
Sbjct: 183 AAIPADFDRAGFERNAKVNFIRLQAAYDAGNLDDIREFTTPEMFAEIKLDFAEREAV--T 240

Query: 152 VKSSLVGIDDMKII 165
             S +V ID   + 
Sbjct: 241 QTSEVVRIDTTVLE 254


>gi|170591877|ref|XP_001900696.1| Tim44-like domain containing protein [Brugia malayi]
 gi|158591848|gb|EDP30451.1| Tim44-like domain containing protein [Brugia malayi]
          Length = 389

 Score = 42.9 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 7/145 (4%)

Query: 87  VMRDIVSV--YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST 144
            ++ I     + +F  K F   A   Y     +       A++K +    +      +  
Sbjct: 197 GIKRIRKRKGFENFSIKTFPATADEIYVEAHKALMTRDKIALQKYITETAFGKMWPDVEN 256

Query: 145 ----RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
                +  +    S +V +      + S   +   I +R+      A YD+   LI    
Sbjct: 257 GSVVWELMKHIELSRVVSVRCADFPHQS-GNDIAQIIVRMHTMQKIALYDRFGRLILGTE 315

Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225
                V++   F  +I   +  W L
Sbjct: 316 HEAKPVLEYVVFENHIASFDGVWRL 340


>gi|212542915|ref|XP_002151612.1| mitochondrial inner membrane translocase subunit TIM44, putative
           [Penicillium marneffei ATCC 18224]
 gi|210066519|gb|EEA20612.1| mitochondrial inner membrane translocase subunit TIM44, putative
           [Penicillium marneffei ATCC 18224]
          Length = 509

 Score = 42.9 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 57/167 (34%), Gaps = 10/167 (5%)

Query: 48  KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107
           + +FS +D              ++      F       +V++    +   F  + FL E 
Sbjct: 313 QRLFSLKDTYNESENPLISTARSISDRVAGFFAENETARVIKKFREMDPSFQLEPFLREM 372

Query: 108 RNSY--EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165
           R  Y    ++D++ +G +  ++  +    +  ++       +        ++ I  + I 
Sbjct: 373 RE-YILPEVLDAYVKGDIETLKLWLSDAQFSVYSALAQQYTTLGMKSDGRILDIRGVDIA 431

Query: 166 NASI----EENTVYITIRIVGQFISASYD-KDNLLISSDPEIFGKVI 207
           NA +    +     IT R   Q +    + K N L +   +    V 
Sbjct: 432 NARMLEPGDIPVFVITCR--TQEVHVYRNSKTNELAAGMEDRVQLVT 476


>gi|183222654|ref|YP_001840650.1| hypothetical protein LEPBI_I3309 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167781076|gb|ABZ99374.1| Hypothetical protein; putative signal peptide [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 874

 Score = 42.6 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%)

Query: 84  LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
              ++  I +    FD K F  +     E  V ++ +G +      + + V+Q F+
Sbjct: 515 FQSILSKIQNEDPSFDFKQFKEKVIFITETTVSAWDKGNMEPARNFISAAVFQRFS 570


>gi|189912687|ref|YP_001964242.1| hypothetical protein LBF_3195 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167777363|gb|ABZ95664.1| Hypothetical protein LBF_3195 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
          Length = 897

 Score = 42.6 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%)

Query: 84  LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
              ++  I +    FD K F  +     E  V ++ +G +      + + V+Q F+
Sbjct: 538 FQSILSKIQNEDPSFDFKQFKEKVIFITETTVSAWDKGNMEPARNFISAAVFQRFS 593


>gi|218506347|ref|ZP_03504225.1| putative import inner membrane translocase protein, TIM family
           [Rhizobium etli Brasil 5]
          Length = 88

 Score = 42.6 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 148 NEKNVKSSLVGIDDMKIINASIEENTVYITI--RIVGQFISASYDKDNLLISSDPEIFGK 205
           N    + S V +    I  A  E+   Y T+  R          D    ++S D     +
Sbjct: 2   NGVRNRVSDVKLLQGDIAEAWREDGQEYATLAMRYSSIDAMVERDS-GRVVSGDDRRPSE 60

Query: 206 VIDIWTFVRNIPPSNPNWVLISTK 229
             +IWTFVR        W L + +
Sbjct: 61  STEIWTFVRKPGGD---WKLAAIQ 81


>gi|126326787|ref|XP_001379521.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 282

 Score = 42.6 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 13/113 (11%), Positives = 38/113 (33%), Gaps = 2/113 (1%)

Query: 34  KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93
           +    +P  G         +            +++  +  +    P+     +V   ++ 
Sbjct: 64  RLSRRRPLLGPGPCPAPPERGYSSAEEQSPPPRQQTKVMYLGLFNPVVWLRTRVYAFLIW 123

Query: 94  V--YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST 144
                +F+  +F   A+ ++  +     + K   +E+LV   V Q   + ++ 
Sbjct: 124 AYFDQEFNIAEFTVGAKQAFAHVSKLLSQCKFDLLEELVTKEVLQVLKEKVAA 176


>gi|224055461|ref|XP_002191301.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 246

 Score = 42.6 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 23/48 (47%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
             +F  ++F   A+ ++  +     + K+  +E+LV + V Q   + +
Sbjct: 90  DQEFSIEEFTRGAKQAFSVVSKLLSQRKLDLLEELVSAEVLQVLKEKI 137


>gi|194217042|ref|XP_001501754.2| PREDICTED: similar to Mitochondrial ribosomal protein L45 [Equus
           caballus]
          Length = 304

 Score = 42.2 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 66/207 (31%), Gaps = 24/207 (11%)

Query: 33  KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK------ 86
           +K G   P        ++             +G  + +  S   L     RL K      
Sbjct: 61  RKAGLVIPPERLERPIHLACTAGIFDAYVPPEGDARVSSLSKEGLARRAERLKKNVASQL 120

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST-- 144
            +R I     +F  KDF  +A+N +              +  L          + +    
Sbjct: 121 SIRRIRECDANFKIKDFPEKAKNIFIEAHLCLNNSDSDQLHTL---------GNXIPDMV 171

Query: 145 RKSNEKNVKSSLVG------IDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLIS 197
                K V+ S V       +  ++  N   + N    IT+R+  +   A YD+   L+ 
Sbjct: 172 WDLKYKTVRWSFVESLEPPLVVQVRCSNLLNQGNMYGQITVRMHTRQTLAIYDRFGRLMY 231

Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWV 224
              ++   V++   F +++     +W 
Sbjct: 232 GQEDVPKDVLEYVVFEKHLVNPYGSWR 258


>gi|51948470|ref|NP_001004251.1| hypothetical protein LOC301418 precursor [Rattus norvegicus]
 gi|81884505|sp|Q6AY04|CB047_RAT RecName: Full=Uncharacterized protein C2orf47 homolog,
           mitochondrial; Flags: Precursor
 gi|50925809|gb|AAH79246.1| Similar to hypothetical protein FLJ22555 [Rattus norvegicus]
 gi|149046128|gb|EDL99021.1| similar to hypothetical protein FLJ22555 [Rattus norvegicus]
          Length = 291

 Score = 42.2 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 21/49 (42%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
             +F   +F   A+ ++  +     + K   +E+LV   V Q   + ++
Sbjct: 136 DKEFSIAEFSEGAKQAFAYVSKLLSQCKFDLLEELVAKEVLQVLKEKVA 184


>gi|326430800|gb|EGD76370.1| hypothetical protein PTSG_01070 [Salpingoeca sp. ATCC 50818]
          Length = 267

 Score = 42.2 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 74/209 (35%), Gaps = 39/209 (18%)

Query: 45  FSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT-------- 96
             G+       E          +     +I++  P  T +   +R +   +         
Sbjct: 51  AQGRRGGPVAAEPATTLPPLSCQCRAYSTISKQRPDLTPVG-FLRSLRIRWQLYNLRKPW 109

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL---VDSRVYQDFNDSLSTRKSNEKNVK 153
            FDP +F+  AR  +E +     +G + +++ +   +   VY++       R+  +++  
Sbjct: 110 GFDPDEFIQGARMVWEQLHAIVRDGDMESLQSMKRSMTPLVYRELKH--RAREREDESHH 167

Query: 154 SSLVGIDDMKII----NASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDI 209
                ++D  II    N S +E  + I +  + ++ + + D+ +             +  
Sbjct: 168 KLPAVLEDAHIINVFGNISSQEIRLSILVEFLARY-TPTEDERDDFWD---------LQQ 217

Query: 210 WTFV------RNIP-PSNP----NWVLIS 227
           W F       R+    ++P     W L S
Sbjct: 218 WVFETPILTFRDEGYATDPVQELTWTLTS 246


>gi|331242860|ref|XP_003334075.1| hypothetical protein PGTG_15619 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309313065|gb|EFP89656.1| hypothetical protein PGTG_15619 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 319

 Score = 42.2 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 43/153 (28%), Gaps = 41/153 (26%)

Query: 107 ARNSYEAIVDS--------FFEGKVHAIEKLVDSRVYQDFNDSLSTR------------- 145
           A  +Y  I+ +        F +     ++K +   + + F      R             
Sbjct: 159 ADEAYGTIILAHQTVTSGSFED---PQVKKFLHPSMVE-FLQEKRERLLRSYSPSHLITW 214

Query: 146 -------------KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
                        K  +   +  +V +              V I +R          D+ 
Sbjct: 215 TKHSPAPEAGKKGKQAQPEKELEIVAMRAAPFDQG---GTVVQIAVRFKSLQSLEIRDER 271

Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
            LL+         +++ + F + +  ++ ++ L
Sbjct: 272 GLLVFGSHSKPQPIMEYFVFQKRMGQTDQSFRL 304


>gi|91085613|ref|XP_969487.1| PREDICTED: similar to Juvenile hormone esterase binding protein 29
           CG3776-PA [Tribolium castaneum]
 gi|270010037|gb|EFA06485.1| hypothetical protein TcasGA2_TC009382 [Tribolium castaneum]
          Length = 260

 Score = 41.8 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS-----TRKSNE 149
             DF+  DF+  ++ + E +     EG V A++ LV   +      +++      R+   
Sbjct: 102 DRDFNLPDFVVGSKKAVEVVSKKIAEGNVKALDGLVTEDILPALQRAVTLMSLSQREQIA 161

Query: 150 KNVKS 154
             V+ 
Sbjct: 162 VEVED 166


>gi|85112444|ref|XP_964347.1| hypothetical protein NCU01983 [Neurospora crassa OR74A]
 gi|28926125|gb|EAA35111.1| hypothetical protein NCU01983 [Neurospora crassa OR74A]
 gi|38567071|emb|CAE76368.1| hypothetical protein [Neurospora crassa]
          Length = 281

 Score = 41.8 bits (97), Expect = 0.082,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 46/139 (33%), Gaps = 27/139 (19%)

Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI-DDMKIIN 166
           +  +  + ++   G    +EK+VDS +Y     ++  R    +     LV    + +I++
Sbjct: 125 KALHRQMNEAIASGDAEMLEKIVDSYLYVPLAVNIEQRPK-GRTCTWELVRYNKEPRIVS 183

Query: 167 AS---IEENTV----YITIRIVGQFISASYDKDNLLISSDPEIFGKVI----------DI 209
                ++         +T+ I  +       +   ++    +    V           + 
Sbjct: 184 HKIFPLQGTKDKLLWQVTVSIASRQR-VVEHERGRVVPGSEKELDLVENVVIGTMISNET 242

Query: 210 WTFVRNIPPSNPNWVLIST 228
           W        +   W +IST
Sbjct: 243 W-------ATQNAWKIIST 254


>gi|313899741|ref|ZP_07833244.1| conserved hypothetical protein [Clostridium sp. HGF2]
 gi|312955356|gb|EFR37021.1| conserved hypothetical protein [Clostridium sp. HGF2]
          Length = 273

 Score = 41.8 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 12/110 (10%), Positives = 39/110 (35%), Gaps = 2/110 (1%)

Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN 166
             + Y  + D++   KV  ++  +   +Y+ +   L+  +   +      + +    ++ 
Sbjct: 138 VEDIYYHVQDAWTNAKVEDLKPYLTEHLYEQWKMRLTWMELRNERNVLDNIKLRRSAVVG 197

Query: 167 AS--IEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVR 214
                +++  +  + I G  I  + +     I+         ++ W   R
Sbjct: 198 IQDYRDDSQDFCWLYIEGSMIDYTINSQTQTITEGKRKTSTFVEYWKLQR 247


>gi|302412056|ref|XP_003003861.1| mitochondrial inner membrane translocase subunit TIM44
           [Verticillium albo-atrum VaMs.102]
 gi|261357766|gb|EEY20194.1| mitochondrial inner membrane translocase subunit TIM44
           [Verticillium albo-atrum VaMs.102]
          Length = 544

 Score = 41.4 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 10/130 (7%)

Query: 85  NKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
            +V++    +  +F  + FL E R  Y    ++D++ +G V  ++  +    Y  ++   
Sbjct: 385 AQVIKKFREMDPNFKMEPFLTELRE-YILPEVLDAYVKGDVPTLKLWLSEAQYSVYDALT 443

Query: 143 STRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASYD-KDNLLIS 197
                        ++ I  + I  A +    +     IT R   Q +    + K N L +
Sbjct: 444 KQYLKAGMKSDGRILDIRHVDIAKARMLEPGDIPVFVITCR--TQEVHVYRNAKTNELAA 501

Query: 198 SDPEIFGKVI 207
              +    V 
Sbjct: 502 GMEDKVQLVT 511


>gi|315612608|ref|ZP_07887521.1| NinF protein [Streptococcus sanguinis ATCC 49296]
 gi|315315589|gb|EFU63628.1| NinF protein [Streptococcus sanguinis ATCC 49296]
          Length = 241

 Score = 41.4 bits (96), Expect = 0.099,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 50/140 (35%), Gaps = 12/140 (8%)

Query: 86  KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145
           + +  +     +FD + F +  +  Y  +  ++ E   +++  L  + +Y   +  L   
Sbjct: 48  RAISLVKYGDPNFDAEAFTSWVKEVYLKLQVAWTEKNWNSVRALESTSLYSQHSAQLEDH 107

Query: 146 KSNEKNVKSSLVGIDDMKIIN-ASIEENTVYITIRIVGQFISASYDKDN-LLISSDPEIF 203
              +       V I++++I       +    + + +         D +   +I  DP+  
Sbjct: 108 IRAKTTNVLEKVCIENVRIKEFIENPDGNDTLVVILSSILRDYVIDDETRRVIEGDPK-- 165

Query: 204 GKVIDIWT-----FVRNIPP 218
               D++T     F+R    
Sbjct: 166 ---KDLFTVYQLNFIRQHGS 182


>gi|170086684|ref|XP_001874565.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164649765|gb|EDR14006.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 397

 Score = 41.4 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 55/170 (32%), Gaps = 10/170 (5%)

Query: 40  PFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFD 99
           P     S       + E  +++  +   +      +E         +VMR +  +   F+
Sbjct: 201 PVLRSLSELRQAYDQSENPVVSSMRSVTQTVGSWFDE-----NETAQVMRMMKVLDPAFN 255

Query: 100 PKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157
            + F  E R  Y    +VD++      A++       Y     ++           S ++
Sbjct: 256 REGFERELRE-YIVPEVVDAYLSADQEALKAWCGEATYNVLWATMEQYLRQGLISDSKVL 314

Query: 158 GIDDMKIINASIEENTVYI-TIRIVGQFISASYD-KDNLLISSDPEIFGK 205
            I  + + +  I EN + +  I    Q +    + K   ++        +
Sbjct: 315 DIRQVDVSDGKILENDIPVFVISFATQEVLLFRNAKTGEIMVGADNKVEQ 364


>gi|56477363|ref|YP_158952.1| hypothetical protein ebA3408 [Aromatoleum aromaticum EbN1]
 gi|56313406|emb|CAI08051.1| hypothetical protein ebA3408 [Aromatoleum aromaticum EbN1]
          Length = 217

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 27/83 (32%), Gaps = 6/83 (7%)

Query: 14  LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73
           ++F  I   +  +L       TG E P S         +  D    +        D++++
Sbjct: 111 VVFFVIGAAILYRLYS-----TGGE-PASVAQDASPSTAAVDATLRVVPPSSAPADDIEA 164

Query: 74  INELFPIGTRLNKVMRDIVSVYT 96
           ++   P     +    + ++   
Sbjct: 165 VSVAPPPVPAKSSANEEALAAQP 187


>gi|332209708|ref|XP_003253955.1| PREDICTED: uncharacterized protein C2orf47, mitochondrial-like
           [Nomascus leucogenys]
          Length = 291

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 20/49 (40%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
             +F   +F   A+ ++  +     + K   +E+LV   V     + ++
Sbjct: 136 DKEFSIAEFSEGAKQAFAHVSKLLSQCKFDLLEELVAKEVLHALKEKVT 184


>gi|118093426|ref|XP_421922.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 248

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 39  KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL--DSINELFPIGTRLNKVMRDIVSVYT 96
            P  G  S                G+G ++  +     N L  + TR   ++  +    +
Sbjct: 35  PPLPGPLSALPPARFASSGPQGPEGEGPQRRVVVVRITNPLAWLRTRFYYLLIRLY-FDS 93

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
           +F  ++F   A+ ++  +     + K+  +E LV + V Q   + +
Sbjct: 94  EFSIEEFTRGAKQAFSVVSQLLSQRKLDLLEGLVSAEVLQMLKEKI 139


>gi|322374848|ref|ZP_08049362.1| hypothetical protein HMPREF0849_00564 [Streptococcus sp. C300]
 gi|321280348|gb|EFX57387.1| hypothetical protein HMPREF0849_00564 [Streptococcus sp. C300]
          Length = 318

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 49/139 (35%), Gaps = 12/139 (8%)

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
            +  +     +FD + F +  +  Y  +  ++ E   +++  L  + +Y   +  L    
Sbjct: 126 AISRVKYGDPNFDAEAFTSWVKEVYLKLQVAWTEKNWNSVRALESTSLYSQHSTQLEDHI 185

Query: 147 SNEKNVKSSLVGIDDMKIIN-ASIEENTVYITIRIVGQFISASYDKDN-LLISSDPEIFG 204
             +       V I++++I       +    + + +         D +   ++  DP+   
Sbjct: 186 RAKTTNVLEKVCIENVRIKEFIENPDGNDTLVVILSSTLRDYVIDDETRRVLEGDPK--- 242

Query: 205 KVIDIWT-----FVRNIPP 218
              D++T     F+R    
Sbjct: 243 --KDLFTVYQLNFIRQHGS 259


>gi|306825787|ref|ZP_07459126.1| NinF protein [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432148|gb|EFM35125.1| NinF protein [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 238

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 49/139 (35%), Gaps = 12/139 (8%)

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
            +  +     +FD + F +  +  Y  +  ++ E   +++  L  + +Y   +  L    
Sbjct: 46  AISRVKYGDPNFDAEAFTSWVKEVYLKLQVAWTEKNWNSVRALESTSLYSQHSTQLEDHI 105

Query: 147 SNEKNVKSSLVGIDDMKIIN-ASIEENTVYITIRIVGQFISASYDKDN-LLISSDPEIFG 204
             +       V I++++I       +    + + +         D +   ++  DP+   
Sbjct: 106 RAKTTNVLEKVCIENVRIKEFIENPDGNDTLVVILSSTLRDYVIDDETRRVLEGDPK--- 162

Query: 205 KVIDIWT-----FVRNIPP 218
              D++T     F+R    
Sbjct: 163 --KDLFTVYQLNFIRQHGS 179


>gi|301760151|ref|XP_002915883.1| PREDICTED: uncharacterized protein C2orf47 homolog,
           mitochondrial-like [Ailuropoda melanoleuca]
 gi|281353912|gb|EFB29496.1| hypothetical protein PANDA_003910 [Ailuropoda melanoleuca]
          Length = 288

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 11/117 (9%)

Query: 36  GNEKP---FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIV 92
           G ++P     G  +    F     RG     + + +     I  +      +N V   I 
Sbjct: 67  GPQRPLLSPPGLPAAFSAFPAYPRRGYSAEEQPQPRQKTKMI--ILGFSNPINWVRTRIY 124

Query: 93  SV------YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
           +         +F   +F   A+ ++  +     + K   +E+LV   V     + ++
Sbjct: 125 AFLIWAYFDQEFSIAEFSEGAKQAFAHVSKLLSQCKFDLLEELVAKEVLHVLKEKVT 181


>gi|74005545|ref|XP_545584.2| PREDICTED: similar to CG3776-PA [Canis familiaris]
          Length = 289

 Score = 41.0 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 37/116 (31%), Gaps = 9/116 (7%)

Query: 36  GNEKPFSGFFSGKYVFS--KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93
           G  +P       +   S    D R   +  +  +      +  +      +N V   I +
Sbjct: 68  GPPRPLLSPPGPRAALSAFPADARRTYSAEEPPQPRQKTKMI-ILGFSNPINWVRTRIYA 126

Query: 94  V------YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
                    +F   +F   A+ ++  +     + K   +E+LV   V     + ++
Sbjct: 127 FLIWAYFDQEFSIAEFSEGAKQAFAHVSKLLSQCKFDLLEELVAKEVLHVLKEKVT 182


>gi|239582772|ref|NP_078796.2| hypothetical protein LOC79568 precursor [Homo sapiens]
 gi|74730963|sp|Q8WWC4|CB047_HUMAN RecName: Full=Uncharacterized protein C2orf47, mitochondrial;
           Flags: Precursor
 gi|17389900|gb|AAH17959.1| Chromosome 2 open reading frame 47 [Homo sapiens]
 gi|62988776|gb|AAY24163.1| unknown [Homo sapiens]
 gi|119590601|gb|EAW70195.1| hypothetical protein FLJ22555, isoform CRA_a [Homo sapiens]
 gi|119590602|gb|EAW70196.1| hypothetical protein FLJ22555, isoform CRA_a [Homo sapiens]
 gi|312151240|gb|ADQ32132.1| chromosome 2 open reading frame 47 [synthetic construct]
          Length = 291

 Score = 40.6 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 20/49 (40%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
             +F   +F   A+ ++  +     + K   +E+LV   V     + ++
Sbjct: 136 DKEFSITEFSEGAKQAFAHVSKLLSQCKFDLLEELVAKEVLHALKEKVT 184


>gi|10438983|dbj|BAB15393.1| unnamed protein product [Homo sapiens]
          Length = 291

 Score = 40.6 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 20/49 (40%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
             +F   +F   A+ ++  +     + K   +E+LV   V     + ++
Sbjct: 136 DKEFSITEFSEGAKQAFAHVSKLLSQCKFDLLEELVAKEVLHALKEKVT 184


>gi|163846374|ref|YP_001634418.1| extracellular solute-binding protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|163667663|gb|ABY34029.1| extracellular solute-binding protein family 5 [Chloroflexus
           aurantiacus J-10-fl]
          Length = 612

 Score = 40.6 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 43/137 (31%), Gaps = 20/137 (14%)

Query: 4   IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRD-ERGIITL 62
             M S  FLI++   +            G++T   +P +   + + V +          +
Sbjct: 3   SHMVSRLFLIMIVLLLAA---------CGQQTSQSQPPTLPSAQETVTAGPTVAPQPTAV 53

Query: 63  GKGKKKDNLDSINELFPIGTRLNKVM--RDIVSVYTDFD--PKDFLNEARNSYEAIVDSF 118
            +        ++    P       ++  + I ++        KDF N A      I++  
Sbjct: 54  PEATAVPASTAVPTAIPPSGGKLTILSWQAITTLNPHLATGVKDF-NGAT----VILEPL 108

Query: 119 FE-GKVHAIEKLVDSRV 134
               +   +   + + +
Sbjct: 109 ARYNERDELVPFLAAEI 125


>gi|19353157|gb|AAH24945.1| 9430016H08Rik protein [Mus musculus]
          Length = 182

 Score = 40.6 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 21/49 (42%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
             +F   +F   A+ ++  +     + K   +E+LV   V Q   + ++
Sbjct: 27  DKEFSIAEFSEGAKQAFAYVSKLLSQCKFDLLEELVAKEVLQILKEKVT 75


>gi|222524140|ref|YP_002568611.1| extracellular solute-binding protein family 5 protein [Chloroflexus
           sp. Y-400-fl]
 gi|222448019|gb|ACM52285.1| extracellular solute-binding protein family 5 [Chloroflexus sp.
           Y-400-fl]
          Length = 612

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 43/137 (31%), Gaps = 20/137 (14%)

Query: 4   IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRD-ERGIITL 62
             M S  FLI++   +            G++T   +P +   + + V +          +
Sbjct: 3   SHMVSRLFLIMIVLLLAA---------CGQQTSQSQPPTLPSAQETVTAGPTVAPQPTAV 53

Query: 63  GKGKKKDNLDSINELFPIGTRLNKVM--RDIVSVYTDFD--PKDFLNEARNSYEAIVDSF 118
            +        ++    P       ++  + I ++        KDF N A      I++  
Sbjct: 54  PEATAVPASTAVPTAIPPSGGKLTILSWQAITTLNPHLATGVKDF-NGAT----VILEPL 108

Query: 119 FE-GKVHAIEKLVDSRV 134
               +   +   + + +
Sbjct: 109 ARYNERDELVPFLAAEI 125


>gi|218506541|ref|ZP_03504419.1| hypothetical protein RetlB5_02514 [Rhizobium etli Brasil 5]
          Length = 22

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 212 FVRNIPPSNPNWVLISTKLGE 232
           F R+    +PNW L++T+   
Sbjct: 1   FARDTRSRDPNWKLVATESEH 21


>gi|76779894|gb|AAI06212.1| LOC733342 protein [Xenopus laevis]
          Length = 228

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 23/47 (48%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
             +F  ++F + A+ ++  +     + K  A++ L+ S + +D  + 
Sbjct: 72  DREFTIEEFTDGAKQAFTLVSKLLSQCKFDALQNLISSELLEDIKEK 118


>gi|224126203|ref|XP_002190248.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 182

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 23/47 (48%)

Query: 96  TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
            +F  ++F   A+ ++  +     + K+  +E+LV + V Q   + +
Sbjct: 27  QEFSIEEFTRGAKQAFSVVSKLLSQRKLDLLEELVSAEVLQVLKEKI 73


>gi|47937708|gb|AAH72282.1| LOC432279 protein [Xenopus laevis]
          Length = 199

 Score = 40.6 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 24/47 (51%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
             +F+ ++F + A+ ++  +     + K  A++ L+ S + QD  + 
Sbjct: 68  DREFNIEEFTDGAKQAFTLVSKLLSQCKFDALQNLISSELLQDIKEK 114


>gi|281491081|ref|YP_003353061.1| hypothetical protein LLKF_0593 [Lactococcus lactis subsp. lactis
           KF147]
 gi|281374839|gb|ADA64359.1| Hypothetical protein LLKF_0593 [Lactococcus lactis subsp. lactis
           KF147]
          Length = 243

 Score = 40.6 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 12/105 (11%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV---GIDDMKIINASIE 170
           + D++ +  + A+ +     +Y+     L       +   +  V   GI   K     ++
Sbjct: 130 VQDAWDKHDLRALSESYGDNLYEKHEKILQKMSDKGQINHTRSVVLDGITRYK----EVK 185

Query: 171 ENTVYITIRIVG--QFISASYDKDNLLISSDPEIFGKVIDIWTFV 213
           +N V + +  V     +S        +I+ + +        WTF 
Sbjct: 186 DNQVEVDLYFVAIDHLVSV---NSGQIIAGNTQERRAFKQRWTFS 227


>gi|118835767|gb|AAI28910.1| LOC733342 protein [Xenopus laevis]
          Length = 225

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 23/47 (48%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
             +F  ++F + A+ ++  +     + K  A++ L+ S + +D  + 
Sbjct: 69  DREFTIEEFTDGAKQAFTLVSKLLSQCKFDALQNLISSELLEDIKEK 115


>gi|52545739|emb|CAH56348.1| hypothetical protein [Homo sapiens]
          Length = 171

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 20/49 (40%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
             +F   +F   A+ ++  +     + K   +E+LV   V     + ++
Sbjct: 16  DKEFSITEFSEGAKQAFAHVSKLLSQCKFDLLEELVAKEVLHALKEKVT 64


>gi|112419450|gb|AAI22493.1| LOC733342 protein [Xenopus laevis]
          Length = 225

 Score = 40.6 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 23/47 (48%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
             +F  ++F + A+ ++  +     + K  A++ L+ S + +D  + 
Sbjct: 69  DREFTIEEFTDGAKQAFTLVSKLLSQCKFDALQNLISSELLEDIKEK 115


>gi|238880462|gb|EEQ44100.1| hypothetical protein CAWG_02360 [Candida albicans WO-1]
          Length = 424

 Score = 40.2 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 42/127 (33%), Gaps = 6/127 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
           T   KV++ +  +   F   DF     N Y    +VD++ +     +++ +    Y  + 
Sbjct: 261 TEQAKVVKQLKLMDPSFRLTDFQRTLTN-YIVPEVVDAYIKNDAKVLKEWLSEAPYNVWE 319

Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFISASYD-KDNLLI 196
            +            S ++ I  ++I+        +   I +    Q I      K   + 
Sbjct: 320 ANNKQFIQQGLFSDSRVLDIRGVEIVTCKSLQPNDVPVIVVSCRAQEIHLYRKAKTGEIA 379

Query: 197 SSDPEIF 203
           +   +  
Sbjct: 380 AGTEDHI 386


>gi|213405048|ref|XP_002173296.1| mitochondrial import inner membrane translocase subunit
           [Schizosaccharomyces japonicus yFS275]
 gi|212001343|gb|EEB07003.1| mitochondrial import inner membrane translocase subunit
           [Schizosaccharomyces japonicus yFS275]
          Length = 428

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 51/159 (32%), Gaps = 10/159 (6%)

Query: 54  RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
           ++    I        D++ S        T  ++V+     +   F+ + F    R   E 
Sbjct: 237 QETEHPILSSVRDMADSISSFWYRMFSETEASQVVSRFKEIDPSFNSEVFQRYLR---EY 293

Query: 114 IV----DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
           I+    +++ +G   A+        +  +  +      +       ++ I  + I +  +
Sbjct: 294 IIPEVSEAYVKGDKEALRTWFSEAPFSVWETTTKEYAKHGVVSAGQVLDIRGVDIASYRM 353

Query: 170 E--ENTVYITIRIVGQFISASYD-KDNLLISSDPEIFGK 205
               N   + I    Q +    + K   +++   +   +
Sbjct: 354 LQPNNIPVMVITFRTQEVHLFKNAKSGEVVAGRNDRIQQ 392


>gi|163915247|ref|NP_001106589.1| hypothetical protein LOC100127804 [Xenopus (Silurana) tropicalis]
 gi|160773565|gb|AAI55415.1| LOC100127804 protein [Xenopus (Silurana) tropicalis]
          Length = 304

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 7/47 (14%), Positives = 23/47 (48%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
             +F+ ++F + A+ ++  +     + K  A++ L+   + +D  + 
Sbjct: 148 DREFNIEEFTDGAKQAFTLVSKLLSQCKFDALQNLISGELLEDIKEK 194


>gi|62825960|gb|AAH94111.1| LOC734150 protein [Xenopus laevis]
          Length = 177

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 23/47 (48%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
             +F  ++F + A+ ++  +     + K  A++ L+ S + +D  + 
Sbjct: 21  DREFTIEEFTDGAKQAFTLVSKLLSQCKFDALQNLISSELLEDIKEK 67


>gi|68476333|ref|XP_717816.1| hypothetical protein CaO19.5444 [Candida albicans SC5314]
 gi|68476522|ref|XP_717722.1| hypothetical protein CaO19.12899 [Candida albicans SC5314]
 gi|46439447|gb|EAK98765.1| hypothetical protein CaO19.12899 [Candida albicans SC5314]
 gi|46439548|gb|EAK98865.1| hypothetical protein CaO19.5444 [Candida albicans SC5314]
          Length = 424

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 42/127 (33%), Gaps = 6/127 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
           T   KV++ +  +   F   DF     N Y    +VD++ +     +++ +    Y  + 
Sbjct: 261 TEQAKVVKQLKLMDPSFRLTDFQRTLTN-YIVPEVVDAYIKNDAKVLKEWLSEAPYNVWE 319

Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFISASYD-KDNLLI 196
            +            S ++ I  ++I+        +   I +    Q I      K   + 
Sbjct: 320 ANNKQFIQQGLFSDSRVLDIRGVEIVTCKSLQPNDVPVIVVSCRAQEIHLYRKAKTGEIA 379

Query: 197 SSDPEIF 203
           +   +  
Sbjct: 380 AGTEDHI 386


>gi|291391992|ref|XP_002712422.1| PREDICTED: juvenile hormone esterase binding protein 29-like
           [Oryctolagus cuniculus]
          Length = 292

 Score = 40.2 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 20/49 (40%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
             +F   +F   A+ ++  +     + K   +E+LV   V     + ++
Sbjct: 137 DKEFSIAEFSEGAKQAFAYVSKLLSQCKFDLLEELVAKEVLHVLKEKVT 185


>gi|284044140|ref|YP_003394480.1| import inner membrane translocase subunit Tim44 [Conexibacter
           woesei DSM 14684]
 gi|283948361|gb|ADB51105.1| import inner membrane translocase subunit Tim44 [Conexibacter
           woesei DSM 14684]
          Length = 462

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/118 (9%), Positives = 43/118 (36%), Gaps = 6/118 (5%)

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTV 174
           ++       + +L+   +  +++  L        + +  ++ ID ++ +  +    +   
Sbjct: 144 AWDARDDARLAQLLVPDLLVEWSRRLDDFARKGWHNRVEVLSIDAIEYLGLTNREGDKDD 203

Query: 175 YITIRIVGQFISASYDKDNLLIS--SDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
            +T+RI  +       ++ +++           + + WT  +        W++ S + 
Sbjct: 204 RVTVRISAKLRDYVELRNGMIMKRNESGSDVVALTEFWTLAK--RADGNGWIVASIES 259


>gi|296205193|ref|XP_002749654.1| PREDICTED: uncharacterized protein C2orf47, mitochondrial-like
           [Callithrix jacchus]
          Length = 290

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 20/49 (40%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
             +F   +F   A+ ++  +     + K   +E+LV   V     + ++
Sbjct: 135 DKEFSIAEFSEGAKQAFAHVSKLLSQCKFDLLEELVAKEVLHVLKEKVT 183


>gi|302564776|ref|NP_001180825.1| chromosome 2 open reading frame 47 [Macaca mulatta]
          Length = 291

 Score = 40.2 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 20/49 (40%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
             +F   +F   A+ ++  +     + K   +E+LV   V     + ++
Sbjct: 136 DKEFSIAEFSEGAKQAFAHVSKLLSQCKFDLLEELVAKEVLHVLKEKVT 184


>gi|331266951|ref|YP_004326581.1| Tim44 domain superfamily protein [Streptococcus oralis Uo5]
 gi|326683623|emb|CBZ01241.1| Tim44 domain superfamily protein [Streptococcus oralis Uo5]
          Length = 314

 Score = 39.9 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 49/139 (35%), Gaps = 12/139 (8%)

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
            +  +     +FD + F +  +  Y  +  ++ E   +++  L  + +Y   +  L    
Sbjct: 122 AISRVKYGDPNFDAEAFTSWVKEVYLKLQVAWTEKNWNSVRALESTSLYSQHSTQLEDHI 181

Query: 147 SNEKNVKSSLVGIDDMKIIN-ASIEENTVYITIRIVGQFISASYDKDN-LLISSDPEIFG 204
             +       V I++++I       +    + + +         D +   ++  DP+   
Sbjct: 182 RAKTTNVLEKVCIENVRIKEFIENPDGNDTLVVILSSILRDYVIDDETRRVLEGDPK--- 238

Query: 205 KVIDIWT-----FVRNIPP 218
              D++T     F+R    
Sbjct: 239 --KDLFTVYQLNFIRQHGS 255


>gi|146309531|ref|YP_001189996.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
           mendocina ymp]
 gi|145577732|gb|ABP87264.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
           mendocina ymp]
          Length = 284

 Score = 39.9 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 68/217 (31%), Gaps = 33/217 (15%)

Query: 14  LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73
           L+F  I F +F  L                  + +     +         +     +   
Sbjct: 100 LIFGLIAFLLFRFL-----------------AARRAQQQPQAATAGAPYQREMPNASNAP 142

Query: 74  INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
                  G RL      +++    F+ ++F+   R  + ++   +   ++  I + V  +
Sbjct: 143 AAGSNIFGARLASA-APVINAPAWFNEQNFIAAGREHFMSLQQHWDADEMDKIAEFVTPQ 201

Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
           + +        R       +S+   ID++++    +++N          +   A+     
Sbjct: 202 LLEFLKR---ERAELGDGFQST--YIDELQVQLDGVDDN---------AEKTIATLTFSG 247

Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
           +  +S  +      + W   R    + P W++   + 
Sbjct: 248 VSKTSRFDQGEPFSESWRLERAQGDNQP-WLIAGIRQ 283


>gi|114052406|ref|NP_001040474.1| juvenile hormone esterase binding protein [Bombyx mori]
 gi|95103044|gb|ABF51463.1| juvenile hormone esterase binding protein [Bombyx mori]
          Length = 243

 Score = 39.9 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKS 154
             +F   +F+  ++++ + +  +        +E LVD         ++S         + 
Sbjct: 86  DQEFSLNEFIEASKHAVQIVSGALQNSDFKTLEGLVDKDAINALKTAVSQ----LSVSQR 141

Query: 155 SLVGIDDMKIINA 167
            L+ I+   I  A
Sbjct: 142 QLLAIEKEDIFYA 154


>gi|331230884|ref|XP_003328106.1| mitochondrial import inner membrane translocase subunit [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
 gi|309307096|gb|EFP83687.1| mitochondrial import inner membrane translocase subunit [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
          Length = 580

 Score = 39.9 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 9/130 (6%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI----VDSFFEGKVHAIEKLVDSRVYQD 137
           T   KV+R +  V   F+   FL + R   E I    VDSF +  + A++       +  
Sbjct: 346 TETAKVIRLVKEVDPAFNYDAFLADLR---EFIIPDFVDSFVDNDLQALKMWTSEAAFNV 402

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI--EENTVYITIRIVGQFISASYDKDNLL 195
            +  +           + ++ +  + I++A +  E +     +      I+   +    +
Sbjct: 403 TSAPMKMYLQRGLRPANQIIDLKGIDILSAKVLEERDLPVFIVAFKTHEINCYINPAKRV 462

Query: 196 ISSDPEIFGK 205
            +       +
Sbjct: 463 SAKSKSSIEE 472


>gi|112819389|gb|ABI23690.1| juvenile hormone esterase binding protein [Bombyx mori]
          Length = 243

 Score = 39.9 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 7/50 (14%), Positives = 20/50 (40%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST 144
             +F   +F+  ++++ + +  +        +E LVD         ++S 
Sbjct: 86  DQEFSLNEFIEASKHAVQIVSGALQNSDFKTLEGLVDKDAINALKTAVSQ 135


>gi|189202656|ref|XP_001937664.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187984763|gb|EDU50251.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 372

 Score = 39.9 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 11/110 (10%)

Query: 101 KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160
           K F   A+  YE + +SF  G V  ++        +     ++ R      V   + G  
Sbjct: 165 KQFKYIAKRHYEHVYNSFAAGNVRKLKDTCLPPFLRKIQSQIAVR--GGLRVNWKIHGNI 222

Query: 161 DMKIINASIE------ENTV--YITIRIVGQFISASYDKDNLLISSDPEI 202
             +I++           +T    + +R+  +  S +  K     +S    
Sbjct: 223 AARIVSHRASPLGESHPDTAYRQLVVRLKSKQ-SITRTKSGRKAASSSST 271


>gi|241952497|ref|XP_002418970.1| import inner membrane translocase subunit, mitochondrial precursor,
           putative; translocase of the inner mitochondrial
           membrane component, putative [Candida dubliniensis CD36]
 gi|223642310|emb|CAX42552.1| import inner membrane translocase subunit, mitochondrial precursor,
           putative [Candida dubliniensis CD36]
          Length = 426

 Score = 39.9 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 6/127 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
           T   KV++ +  +   F   DF     N Y    +VD++ +     +++ +    Y  + 
Sbjct: 263 TEQAKVVKQLKLMDPSFRLTDFQRTLTN-YIVPEVVDAYIKNDAKVLKEWLSEAPYNVWE 321

Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFISASYD-KDNLLI 196
            +            S ++ I  + I+        +   I +    Q I      K   + 
Sbjct: 322 ANNKQFIQQGLFSDSRVLDIRGVDIVTCKSLQPNDVPVIVVSCRAQEIHLYRKAKTGEIA 381

Query: 197 SSDPEIF 203
           +   +  
Sbjct: 382 AGTEDHI 388


>gi|195586603|ref|XP_002083063.1| GD11914 [Drosophila simulans]
 gi|194195072|gb|EDX08648.1| GD11914 [Drosophila simulans]
          Length = 267

 Score = 39.9 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 64/172 (37%), Gaps = 15/172 (8%)

Query: 39  KPFSGFFSG-KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSV--- 94
           +P S  F+       K+D+    +L +  +  +   I     + +  N +    +     
Sbjct: 45  QPVSRSFASLPQEQDKKDQNARESLNRLPRLMDFPEIVWPSALNSLKNWITIQFIIRPYF 104

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS-----TRKS-- 147
            ++F  KDF+  A+ + + +      G + +++ LV      +    +       R+   
Sbjct: 105 DSEFQLKDFIYGAKQALQVVSSKLMGGDLDSLDNLVSPEAIAELRPVIQKLSMTQRRQLE 164

Query: 148 -NEKNVKSSLVGIDDMKIINA--SIEENTVYITIRI-VGQFISASYDKDNLL 195
             E ++  S      +   +A   +++  V IT+   V + +S   ++   +
Sbjct: 165 IRESDIYLSFPYQVGIMFDDANDKLQKRFVEITMVFHVMRGLSEMRERGEEI 216


>gi|255723518|ref|XP_002546692.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240130566|gb|EER30130.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 432

 Score = 39.9 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 42/127 (33%), Gaps = 6/127 (4%)

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
           T   KV++ +  +   F   DF     N Y    +VD++ +     +++ +    Y  + 
Sbjct: 269 TEQAKVVKQLKLMDPSFRLTDFQRTLTN-YIVPEVVDAYVKNDAAVLKEWLSEAPYNVWE 327

Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFISASYD-KDNLLI 196
            +            S ++ I  ++I+        +   + +    Q I      K   + 
Sbjct: 328 ANNKQFIQQGLFSDSRVLDIRGVEIVTCKSLQPNDVPVVVVSCRAQEIHLYRKAKTGEIA 387

Query: 197 SSDPEIF 203
           +   +  
Sbjct: 388 AGTEDHI 394


>gi|154249339|ref|YP_001410164.1| signal peptidase I [Fervidobacterium nodosum Rt17-B1]
 gi|154153275|gb|ABS60507.1| signal peptidase I [Fervidobacterium nodosum Rt17-B1]
          Length = 295

 Score = 39.9 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 37/120 (30%), Gaps = 13/120 (10%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
             + L++A +   +  +L          E       S     +  D   +  +    ++ 
Sbjct: 20  TIITLIYAIVAATII-RLY-------VFETMLVPTPSMVPTINVGDRLFVEKVTYSAREP 71

Query: 70  NLDSINELFPI--GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
            +  I   +      R  +++R        F PK+F    +     +     EG V  ++
Sbjct: 72  QIGEIVVFYTPFPDERAQQMLRAFDKFMDSFSPKEFKGSVKYVKRLVAK---EGDVITLK 128


>gi|46129419|ref|XP_389061.1| hypothetical protein FG08885.1 [Gibberella zeae PH-1]
          Length = 280

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 43/141 (30%), Gaps = 18/141 (12%)

Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDD----- 161
           A+N Y  ++ +F  G    I  L   +  +    ++  R++  + V   L+ ++      
Sbjct: 114 AKNMYMEMLGAFAAGDKTTINNLCLGQFGKKLTAAID-RRNAGERVTFELLSLNKSLLYP 172

Query: 162 -------MKIINASIEENTVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFV 213
                    I     +  T    I I      A Y K  + LI          ++     
Sbjct: 173 RVVAHQVHNINPHDKDNCTEQAVIAIASTQRVAKYKKPSDQLIPGS-TKVQDKLEYVVLS 231

Query: 214 RNIPPS---NPNWVLISTKLG 231
           R +      +  W +  T   
Sbjct: 232 RQVNEKTFQSTPWRIWGTVPA 252


>gi|164656629|ref|XP_001729442.1| hypothetical protein MGL_3477 [Malassezia globosa CBS 7966]
 gi|159103333|gb|EDP42228.1| hypothetical protein MGL_3477 [Malassezia globosa CBS 7966]
          Length = 489

 Score = 39.5 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 42/130 (32%), Gaps = 4/130 (3%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDF-LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138
                 +V+R I  +   F    F ++        ++D++   + H + +      Y   
Sbjct: 324 EENETAQVVRAIKQLDPSFTLSGFTIDLREYVVPEVLDAYHTAQRHLLRQWCGEATYNVL 383

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN--TVYITIRIVG-QFISASYDKDNLL 195
             +L             ++ + +++I+   I E      + I     + +  +  K   +
Sbjct: 384 MATLDPYLQRGYIADGRILDLSNIEIVQGKILETGPMPVLVISFQTQELMYFTDPKTREI 443

Query: 196 ISSDPEIFGK 205
           I    E   +
Sbjct: 444 IDGSVEQAIQ 453


>gi|194222446|ref|XP_001917906.1| PREDICTED: similar to Uncharacterized protein C2orf47,
           mitochondrial [Equus caballus]
          Length = 322

 Score = 39.5 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 19/49 (38%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
             +F   +F   A+ ++  +     + K   +E+ V   V     + ++
Sbjct: 167 DREFSIAEFSEGAKQAFAHVSKLLSQCKFDLLEEFVAKEVLHVLKEKVT 215


>gi|71021021|ref|XP_760741.1| hypothetical protein UM04594.1 [Ustilago maydis 521]
 gi|46100134|gb|EAK85367.1| hypothetical protein UM04594.1 [Ustilago maydis 521]
          Length = 567

 Score = 39.5 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 44/124 (35%), Gaps = 5/124 (4%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE--AIVDSFFEGKVHAIEKLVDSRVYQD 137
                 +V R +  +   F  + F  + R  Y    ++D++     H + +      +  
Sbjct: 403 EENDFARVTRQMKMLDPSFTMESFQRDLRE-YVVPELIDAYHGAARHLLRQWCGEATFNL 461

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYITIRIVGQFISASYD-KDNLL 195
              ++    S        L+ + +++I+ A  ++ N   + +    Q +    D K   +
Sbjct: 462 LMATIDPYLSKGYIPHGRLLDLKNVEILQAKILDNNVPVLVVSFTSQELMFFKDPKTAEV 521

Query: 196 ISSD 199
            + +
Sbjct: 522 KAGN 525


>gi|157115451|ref|XP_001658212.1| hypothetical protein AaeL_AAEL007196 [Aedes aegypti]
 gi|94469074|gb|ABF18386.1| juvenile hormone esterase-binding protein [Aedes aegypti]
 gi|108876910|gb|EAT41135.1| conserved hypothetical protein [Aedes aegypti]
          Length = 284

 Score = 39.5 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 61/158 (38%), Gaps = 28/158 (17%)

Query: 45  FSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS----------- 93
           +  +  +S      +   G+G+    L    E+         +M+ I +           
Sbjct: 68  YGQRCSYSTEAPDELPPRGRGRTLPKLMDFPEIIWP-----SIMKSIKNWIMVHFIIRPY 122

Query: 94  VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL-----STRKS- 147
              +F   +F+  A+ + + +  S   G++ +++ LVD +   D  +++     + R   
Sbjct: 123 FDREFSLPEFVQGAKQALQVVSASLAGGELKSLDGLVDRQTLNDLKNTIGKMSVAQRYDL 182

Query: 148 --NEKNVKSSL---VGIDDMKIINASIEENTVYITIRI 180
              ++++  S    VG+   +   AS ++  V IT+  
Sbjct: 183 MVQKEDIYFSFPYQVGVMFDEEDEAS-QKRFVEITMVF 219


>gi|330843779|ref|XP_003293823.1| hypothetical protein DICPUDRAFT_158742 [Dictyostelium purpureum]
 gi|325075809|gb|EGC29654.1| hypothetical protein DICPUDRAFT_158742 [Dictyostelium purpureum]
          Length = 268

 Score = 39.5 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 58/159 (36%), Gaps = 26/159 (16%)

Query: 87  VMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST- 144
           +   + ++    +  + FL EA + +  + +S  +G  H + +L        F + +   
Sbjct: 110 IKSKLKALDRTRYTKRAFLKEAEDMFIKVNESIADGNKHQLNELSS----IQFGEVVEKK 165

Query: 145 -----RKSN----------EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
                R  +           KN+  +  G       +++         +  +G      +
Sbjct: 166 SGYLNRNKDLKFKWSCNITGKNLLWTRAGQIKTSAKSSTF---FAQNCVEFIGTQSIQVF 222

Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
           DK N LIS + +   K+  I  F RN+  +   W + S+
Sbjct: 223 DKKNNLISENKDQPFKLEYI--FERNLASTPSMWRVCSS 259


>gi|302921469|ref|XP_003053289.1| hypothetical protein NECHADRAFT_59411 [Nectria haematococca mpVI
           77-13-4]
 gi|256734229|gb|EEU47576.1| hypothetical protein NECHADRAFT_59411 [Nectria haematococca mpVI
           77-13-4]
          Length = 278

 Score = 39.5 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 14/114 (12%)

Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI-- 164
           A+  Y  ++ +F  G    I  L   +  +    ++  R++  +     LV  +      
Sbjct: 111 AKVMYTEMLTAFAAGDKATINSLCLGQFAKKLTAAID-RRNPTERTSFELVKFNKTLFYP 169

Query: 165 ------INA----SIEENTVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVI 207
                 ++A      E +T    I I     ++ Y K    LI    ++  K+ 
Sbjct: 170 RVVAHQVHAVNPYDKENSTEQAVIAIASTQRASKYKKSTGELIPGSTKVQEKIE 223


>gi|299068189|emb|CBJ39408.1| conserved exported protein of unknown function [Ralstonia
           solanacearum CMR15]
          Length = 235

 Score = 39.1 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/147 (10%), Positives = 42/147 (28%), Gaps = 21/147 (14%)

Query: 39  KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF 98
           +P           + +      ++   +    +       P+   + ++ R   +    F
Sbjct: 102 EPNQPGTQPASQATPKPAEPGGSVAMQRPPKPVTPAPAEKPVADPIAEIARQDAAKTGYF 161

Query: 99  DPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS--- 155
                 + A  +         +G +            Q F   ++ R+ N          
Sbjct: 162 LQVGAYDSAEYAERQ------KGNLA----------MQGFEAKVTQREVNGSTKYRVRLG 205

Query: 156 -LVGIDDMKIINASIEENTVYITI-RI 180
               +D+M  + + ++ + V  T+ R 
Sbjct: 206 PFNSLDEMTAVRSRLQASGVESTVIRF 232


>gi|322709552|gb|EFZ01128.1| hypothetical protein MAA_03724 [Metarhizium anisopliae ARSEF 23]
          Length = 318

 Score = 39.1 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/114 (12%), Positives = 40/114 (35%), Gaps = 14/114 (12%)

Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV--------- 157
           A+  Y  ++++F  G    + K+      +  + ++  R+  ++ V+  +V         
Sbjct: 151 AKAMYREMLEAFAAGDKVTLNKICLGEFAKKLSAAID-RRDPKERVRFEVVKYNKGLFYP 209

Query: 158 GIDDMKIINAS-IEEN--TVYITIRIVG-QFISASYDKDNLLISSDPEIFGKVI 207
            +   +I   +  ++   T    + I   Q  S         +    ++  K+ 
Sbjct: 210 RLMSHQIHEVNPFDKTMVTEQAVVAIASTQQASKMSAVTGETVPGSLKLQDKIE 263


>gi|116511408|ref|YP_808624.1| hypothetical protein LACR_0635 [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107062|gb|ABJ72202.1| hypothetical protein LACR_0635 [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 158

 Score = 39.1 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 36/100 (36%), Gaps = 2/100 (2%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
           + +++ +  + ++      ++Y+     L   ++  +   +    I D       I++N 
Sbjct: 45  VQEAWDKQDLQSLSPFYGDQLYEKHQKVLEKMRNKGQINHTRS-AILDGITRYKEIKDNQ 103

Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213
             + +  V      S D    +IS + +   +    W F 
Sbjct: 104 FEVDLYFVAIDYLVSIDS-GQIISGNNQYRREFKQRWNFS 142


>gi|156358621|ref|XP_001624615.1| predicted protein [Nematostella vectensis]
 gi|156211406|gb|EDO32515.1| predicted protein [Nematostella vectensis]
          Length = 289

 Score = 38.7 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 55  DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
           +   I+        D L  +       + + K + +I  +   F+   FL E    +E I
Sbjct: 211 ESDNIVIRATRVVTDRLTDVFSDVFSQSEMAKTLSEITKIDPQFNKDRFLQECE--FEII 268

Query: 115 ---VDSFFEGKVHAIEK 128
              ++ F +GK+  ++ 
Sbjct: 269 PAVLEGFLQGKLDILKD 285


>gi|149921069|ref|ZP_01909528.1| hypothetical protein PPSIR1_09510 [Plesiocystis pacifica SIR-1]
 gi|149818073|gb|EDM77530.1| hypothetical protein PPSIR1_09510 [Plesiocystis pacifica SIR-1]
          Length = 506

 Score = 38.7 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 18/133 (13%)

Query: 91  IVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEK 150
           I     +F    F +   N +     +       A+   +   +     ++L+ R     
Sbjct: 129 IRRHDPNFSAVVFEDFITNLFVRAQQA--RCDAQAL-DALAPYISAPSREALARRAPRGV 185

Query: 151 NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210
            +   ++G   +++I A + E    + +     F                E    + D W
Sbjct: 186 RLSHVVIG--RVQVIGARVAEGRCVVQVLFEANFSDEV-----------GERTWYIRDRW 232

Query: 211 TFVRN--IPPSNP 221
            F R+  +    P
Sbjct: 233 RFERDAAVTSRPP 245


>gi|194886908|ref|XP_001976708.1| GG23023 [Drosophila erecta]
 gi|190659895|gb|EDV57108.1| GG23023 [Drosophila erecta]
          Length = 267

 Score = 38.7 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS-----TRKS-- 147
            +DF  K+F+  A+ + + +      G + +++ LV      +    +       R+   
Sbjct: 105 DSDFQLKEFIYGAKQALQVVSSKLMGGDLDSLDNLVSPEAIAELRPVIQKLSMTQRRQLE 164

Query: 148 -NEKNVKSSLVGIDDMKIINA--SIEENTVYITIRI-VGQFISASYDKDNLL 195
             E ++  S      +   +A   +++  V IT+   V + +S   ++   +
Sbjct: 165 IKESDIYLSFPYQVGIMFDDANDKLQKRFVEITMVFHVMRGLSEMRERGEEI 216


>gi|282917708|ref|ZP_06325459.1| membrane-associated protein tcaA [Staphylococcus aureus subsp.
           aureus D139]
 gi|283767445|ref|ZP_06340360.1| membrane-associated protein tcaA [Staphylococcus aureus subsp.
           aureus H19]
 gi|282318463|gb|EFB48822.1| membrane-associated protein tcaA [Staphylococcus aureus subsp.
           aureus D139]
 gi|283461324|gb|EFC08408.1| membrane-associated protein tcaA [Staphylococcus aureus subsp.
           aureus H19]
 gi|283471578|emb|CAQ50789.1| teicoplanin resistance associated membrane protein [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 460

 Score = 38.7 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F +     +   +       F D +  R S       SL+ I   +II+A    + +  
Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
           T+R+V +      DK+  L     +    + 
Sbjct: 427 TVRLVNENGKQV-DKEYELEQGSQDRLQLIK 456


>gi|110800878|ref|YP_695686.1| hypothetical protein CPF_1240 [Clostridium perfringens ATCC 13124]
 gi|110675525|gb|ABG84512.1| conserved hypothetical protein [Clostridium perfringens ATCC 13124]
          Length = 256

 Score = 38.7 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 43/110 (39%), Gaps = 3/110 (2%)

Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK-IIN 166
             S+  I +++       ++ L+    +      ++     ++    S V +  +  I+ 
Sbjct: 120 EESFPIIQEAWMNRDYSPVKHLMTDNFFDTHTVKMNWMLLKKEKNILSDVELKKVTPILA 179

Query: 167 ASIEEN-TVYITIRIVGQFISASYDKDNL-LISSDPEIFGKVIDIWTFVR 214
              +EN   +I + +  + I  + +++N  +I  D        + W F+R
Sbjct: 180 VENDENGEDFIWVLLKAKMIDYTINEENNCIIDGDYSTANSFEEFWKFIR 229


>gi|195429503|ref|XP_002062798.1| GK19646 [Drosophila willistoni]
 gi|194158883|gb|EDW73784.1| GK19646 [Drosophila willistoni]
          Length = 242

 Score = 38.7 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 43/112 (38%), Gaps = 11/112 (9%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS-----TRKSNE 149
            ++F  KDF+  A+ + + +      G++ +++ LV S    +    +       R+  E
Sbjct: 80  DSEFQLKDFIYGAKEALQVVSSRLMGGELDSLQNLVSSEAINELKPVIQKLSMTQRRQLE 139

Query: 150 KNVKSSLVGIDDMK---IINA--SIEENTVYITIRI-VGQFISASYDKDNLL 195
                  +            A   +++  V IT+   V + +S   ++ + +
Sbjct: 140 IKQSDIYLSFPYQVGIIFDEANDKLQKRFVEITMVFHVMRGLSEMRERGDEI 191


>gi|195353340|ref|XP_002043163.1| GM11918 [Drosophila sechellia]
 gi|194127251|gb|EDW49294.1| GM11918 [Drosophila sechellia]
          Length = 267

 Score = 38.7 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 66/176 (37%), Gaps = 23/176 (13%)

Query: 39  KPFSGFFSG-KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSV--- 94
           +P    F+       K+D+    +L +  +  +   I     + +  N +    +     
Sbjct: 45  QPVRRSFASLPQEQDKKDQNARESLNRLPRLMDFPEIVWPSALNSLKNWITIQFIIRPYF 104

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS-----TRKSNE 149
            ++F  KDF+  A+ + + +      G + +++ LV      +    +       R+   
Sbjct: 105 DSEFQLKDFIYGAKQALQVVSSKLMGGDLDSLDNLVSPEAIAELRPVIQKLSMTQRRQL- 163

Query: 150 KNVKSSL-------VGIDDMKIINAS--IEENTVYITIRI-VGQFISASYDKDNLL 195
           +  +S +       VGI      +AS  +++  V IT+   V + +S   ++   +
Sbjct: 164 EISESDIYLSFPYQVGI---MFDDASDKLQKRFVEITMVFHVMRGLSEMRERGEEI 216


>gi|74008921|ref|XP_549236.2| PREDICTED: similar to CG3776-PA [Canis familiaris]
          Length = 220

 Score = 38.7 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 20/49 (40%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
             +F   DF   A+ ++  +     + K   +E+LV   V     + ++
Sbjct: 65  DQEFSIADFSEGAKQAFAHVSKLLSQCKFDLLEELVAKEVLHVLKEKVT 113


>gi|254518212|ref|ZP_05130268.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226911961|gb|EEH97162.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 266

 Score = 38.7 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 60/154 (38%), Gaps = 19/154 (12%)

Query: 86  KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145
             ++++  +  ++D  +  N+   ++  +  ++ E      ++ +  ++Y      +  R
Sbjct: 103 SAIKNLSKMDYNWDYDNIKNDIEEAFYKVQVAWMERNQDLAKEYMSEKLY------IRHR 156

Query: 146 KSNE----KNVKSSLVGIDDMKIINASIEE----NTVYITIRIVGQFISAS-YDKDNLLI 196
              E    +  K+ L  I  +  I  ++++    N   + + I  + I  +  ++ N +I
Sbjct: 157 SKTEWMKVRKEKNILEKIKLVSAIPIALQDKDGTNEDSLWVHIKAKSIDYTIKEETNEII 216

Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
             +        + W F++N       WVL   + 
Sbjct: 217 EGNKYRITHFEEYWKFIKN----EKRWVLDEIRQ 246


>gi|327260776|ref|XP_003215209.1| PREDICTED: uncharacterized protein C2orf47 homolog,
           mitochondrial-like [Anolis carolinensis]
          Length = 257

 Score = 38.7 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 50/152 (32%), Gaps = 18/152 (11%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN--- 151
             +F   +F   A+ ++  +     + K   +E+LV   + Q   + LS    N ++   
Sbjct: 101 DQEFSIHEFTEGAKQAFAHVSRLIAQCKYDLLEELVSKEMVQILKEKLSLLSENHRSALA 160

Query: 152 VKSSLVGIDDMKIINASIEEN---TVYITIRI----VGQFISASYD--KDNLLISSDPEI 202
                +       +    +++    V I +R            + D  K   ++  D E 
Sbjct: 161 ADMDEIMYTTAGDVGIYYDDSGRKFVSILMRFWYLTSADLPDETPDGTKVFQVVFGD-EA 219

Query: 203 FGKVIDIWT----FVRNIPPS-NPNWVLISTK 229
             +   + T    F R       P+W +   +
Sbjct: 220 SKETKRLLTANYEFRREFTQGVKPDWTITRIE 251


>gi|262052119|ref|ZP_06024328.1| TcaA protein [Staphylococcus aureus 930918-3]
 gi|259160020|gb|EEW45055.1| TcaA protein [Staphylococcus aureus 930918-3]
          Length = 460

 Score = 38.7 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F +     +   +       F D +  R S       SL+ I   +II+A    + +  
Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPRIIDAEKHGDKITA 426

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
           T+R++ +      DK+  L     +    + 
Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456


>gi|328863140|gb|EGG12240.1| hypothetical protein MELLADRAFT_73983 [Melampsora larici-populina
           98AG31]
          Length = 318

 Score = 38.3 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 153 KSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTF 212
           +  +V +              V I +R          D+  LL+S   E    V++ + F
Sbjct: 234 EMEIVTMRAAPFDKG---GTVVQIAVRFRTYQSLEVRDECGLLVSGSHESPQLVMEYFVF 290

Query: 213 VRNIPPSNPNWVLI 226
            + +   N  ++L 
Sbjct: 291 QKRMSMVNQPFLLF 304


>gi|196228513|ref|ZP_03127380.1| serine/threonine protein kinase [Chthoniobacter flavus Ellin428]
 gi|196227916|gb|EDY22419.1| serine/threonine protein kinase [Chthoniobacter flavus Ellin428]
          Length = 824

 Score = 38.3 bits (88), Expect = 0.80,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 50/157 (31%), Gaps = 20/157 (12%)

Query: 26  QLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII----TLGKGKKKDNLDSINELFPIG 81
           +LR  L ++ G ++  +     +     +     +    T  + +  +    + EL   G
Sbjct: 640 RLRAALARRDGAKERLTLLQRQRLALRGQSGPVPVDDELTAAERELAEAEARVGELQMSG 699

Query: 82  TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
           T  N  +  +        P+  ++ AR + +     F  G +                  
Sbjct: 700 TP-NGGLLPVTQSNGHLVPQSVVDSAREALDVAQKRFEAGNIDQ-------------VTC 745

Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
           +  R+  +   ++  VG D +    A  +     + +
Sbjct: 746 MKAREQLQW-AEAMFVG-DRLGAAKARRDGARERLEV 780


>gi|332815085|ref|XP_003309438.1| PREDICTED: uncharacterized protein C2orf47, mitochondrial-like [Pan
           troglodytes]
          Length = 291

 Score = 38.3 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 21/49 (42%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
             +F   +F  EA+ ++  +     + K   +E+LV   V     + ++
Sbjct: 136 DKEFSITEFRREAKQAFAHVSKLLSQCKFDLLEELVAKEVLHALKEKVT 184


>gi|254029410|gb|ACT53403.1| assimilatory nitrate reductase [uncultured bacterium]
          Length = 219

 Score = 37.9 bits (87), Expect = 0.97,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 33/99 (33%), Gaps = 6/99 (6%)

Query: 41  FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLN--KVMRDIVSVYTDF 98
                  +     +    ++   +      +   +     GT L     +  +V     F
Sbjct: 67  LFQRLPKRKKRDPKSLTIVVVDPRATDTAKIADYHLAIAPGTDLAFLHGLARLVIEDNGF 126

Query: 99  DPKDFLNEARN---SYEAIVDSFFEGKVHAIEKLVDSRV 134
           D  DF++ A     +Y  I++++  G+   +  + +  +
Sbjct: 127 D-SDFIDAATEGFSAYAQIINAWTPGETANLCGITEQDL 164


>gi|329730366|gb|EGG66756.1| TcaA protein [Staphylococcus aureus subsp. aureus 21193]
          Length = 460

 Score = 37.9 bits (87), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F +     +   +       F D +  R S       SL+ I   +II+A    + +  
Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
           T+R++ +      DK+  L     +    + 
Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456


>gi|329315043|gb|AEB89456.1| Membrane-associated protein tcaA [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 460

 Score = 37.9 bits (87), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F +     +   +       F D +  R S       SL+ I   +II+A    + +  
Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
           T+R++ +      DK+  L     +    + 
Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456


>gi|323439961|gb|EGA97676.1| bicyclomycin and teicoplanin resistance protein [Staphylococcus
           aureus O11]
 gi|323443684|gb|EGB01297.1| bicyclomycin and teicoplanin resistance protein [Staphylococcus
           aureus O46]
          Length = 460

 Score = 37.9 bits (87), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F +     +   +       F D +  R S       SL+ I   +II+A    + +  
Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
           T+R++ +      DK+  L     +    + 
Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456


>gi|302333989|gb|ADL24182.1| teicoplanin resistance associated membrane protein TcaA protein
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 460

 Score = 37.9 bits (87), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F +     +   +       F D +  R S       SL+ I   +II+A    + +  
Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
           T+R++ +      DK+  L     +    + 
Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456


>gi|298695618|gb|ADI98840.1| bicyclomycin and teicoplanin resistance protein [Staphylococcus
           aureus subsp. aureus ED133]
          Length = 460

 Score = 37.9 bits (87), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F +     +   +       F D +  R S       SL+ I   +II+A    + +  
Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
           T+R++ +      DK+  L     +    + 
Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456


>gi|262049816|ref|ZP_06022680.1| TcaA protein [Staphylococcus aureus D30]
 gi|259162123|gb|EEW46701.1| TcaA protein [Staphylococcus aureus D30]
          Length = 460

 Score = 37.9 bits (87), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F +     +   +       F D +  R S       SL+ I   +II+A    + +  
Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
           T+R++ +      DK+  L     +    + 
Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456


>gi|258425101|ref|ZP_05687972.1| teicoplanin resistance protein TcaA [Staphylococcus aureus A9635]
 gi|257844935|gb|EEV68978.1| teicoplanin resistance protein TcaA [Staphylococcus aureus A9635]
          Length = 460

 Score = 37.9 bits (87), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F +     +   +       F D +  R S       SL+ I   +II+A    + +  
Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
           T+R++ +      DK+  L     +    + 
Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456


>gi|253730027|ref|ZP_04864192.1| teicoplanin resistance protein TcaA [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253726240|gb|EES94969.1| teicoplanin resistance protein TcaA [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 460

 Score = 37.9 bits (87), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F +     +   +       F D +  R S       SL+ I   +II+A    + +  
Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
           T+R++ +      DK+  L     +    + 
Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456


>gi|253314696|ref|ZP_04837909.1| TcaA protein [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|258407378|ref|ZP_05680521.1| membrane-associated protein TcaA [Staphylococcus aureus A9763]
 gi|258439686|ref|ZP_05690432.1| membrane-associated protein tcaA [Staphylococcus aureus A9299]
 gi|258442757|ref|ZP_05691317.1| membrane-associated protein tcaA [Staphylococcus aureus A8115]
 gi|258446543|ref|ZP_05694698.1| membrane-associated protein tcaA [Staphylococcus aureus A6300]
 gi|258450340|ref|ZP_05698432.1| membrane-associated protein tcaA [Staphylococcus aureus A6224]
 gi|258455284|ref|ZP_05703244.1| membrane-associated protein tcaA [Staphylococcus aureus A5937]
 gi|269203988|ref|YP_003283257.1| tcaA protein [Staphylococcus aureus subsp. aureus ED98]
 gi|282893802|ref|ZP_06302034.1| membrane-associated protein tcaA [Staphylococcus aureus A8117]
 gi|282926910|ref|ZP_06334537.1| membrane-associated protein tcaA [Staphylococcus aureus A10102]
 gi|296275442|ref|ZP_06857949.1| tcaA protein [Staphylococcus aureus subsp. aureus MR1]
 gi|297244100|ref|ZP_06927990.1| membrane-associated protein tcaA [Staphylococcus aureus A8796]
 gi|257840890|gb|EEV65341.1| membrane-associated protein TcaA [Staphylococcus aureus A9763]
 gi|257847462|gb|EEV71464.1| membrane-associated protein tcaA [Staphylococcus aureus A9299]
 gi|257851878|gb|EEV75812.1| membrane-associated protein tcaA [Staphylococcus aureus A8115]
 gi|257854611|gb|EEV77559.1| membrane-associated protein tcaA [Staphylococcus aureus A6300]
 gi|257856432|gb|EEV79341.1| membrane-associated protein tcaA [Staphylococcus aureus A6224]
 gi|257862495|gb|EEV85263.1| membrane-associated protein tcaA [Staphylococcus aureus A5937]
 gi|262076278|gb|ACY12251.1| tcaA protein [Staphylococcus aureus subsp. aureus ED98]
 gi|282591361|gb|EFB96434.1| membrane-associated protein tcaA [Staphylococcus aureus A10102]
 gi|282763860|gb|EFC03988.1| membrane-associated protein tcaA [Staphylococcus aureus A8117]
 gi|285818019|gb|ADC38506.1| Teicoplanin resistance associated membrane protein TcaA
           [Staphylococcus aureus 04-02981]
 gi|297178878|gb|EFH38123.1| membrane-associated protein tcaA [Staphylococcus aureus A8796]
 gi|312830703|emb|CBX35545.1| tcaA protein [Staphylococcus aureus subsp. aureus ECT-R 2]
          Length = 460

 Score = 37.9 bits (87), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F +     +   +       F D +  R S       SL+ I   +II+A    + +  
Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
           T+R++ +      DK+  L     +    + 
Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456


>gi|148268793|ref|YP_001247736.1| membrane protein-like protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150394863|ref|YP_001317538.1| TcaA protein [Staphylococcus aureus subsp. aureus JH1]
 gi|257794698|ref|ZP_05643677.1| membrane-associated protein tcaA [Staphylococcus aureus A9781]
 gi|258422294|ref|ZP_05685206.1| membrane-associated protein tcaA [Staphylococcus aureus A9719]
 gi|295405043|ref|ZP_06814856.1| membrane-associated protein tcaA [Staphylococcus aureus A8819]
 gi|189029833|sp|A6U483|TCAA_STAA2 RecName: Full=Membrane-associated protein tcaA
 gi|189029834|sp|A5IVD7|TCAA_STAA9 RecName: Full=Membrane-associated protein tcaA
 gi|147741862|gb|ABQ50160.1| membrane protein-like protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149947315|gb|ABR53251.1| TcaA protein [Staphylococcus aureus subsp. aureus JH1]
 gi|257788670|gb|EEV27010.1| membrane-associated protein tcaA [Staphylococcus aureus A9781]
 gi|257841725|gb|EEV66162.1| membrane-associated protein tcaA [Staphylococcus aureus A9719]
 gi|294969988|gb|EFG46006.1| membrane-associated protein tcaA [Staphylococcus aureus A8819]
 gi|315128722|gb|EFT84723.1| TcaA protein [Staphylococcus aureus subsp. aureus CGS03]
 gi|329723641|gb|EGG60170.1| TcaA protein [Staphylococcus aureus subsp. aureus 21172]
          Length = 460

 Score = 37.9 bits (87), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F +     +   +       F D +  R S       SL+ I   +II+A    + +  
Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
           T+R++ +      DK+  L     +    + 
Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456


>gi|87161173|ref|YP_494937.1| teicoplanin resistance associated membrane protein TcaA protein
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88196276|ref|YP_501096.1| hypothetical protein SAOUHSC_02635 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151222469|ref|YP_001333291.1| teicoplanin resistance associated protein A [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|161510550|ref|YP_001576209.1| teicoplanin resistance protein TcaA [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141289|ref|ZP_03565782.1| teicoplanin resistance protein TcaA [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253734228|ref|ZP_04868393.1| teicoplanin resistance associated membrane protein TcaA protein
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|258452629|ref|ZP_05700633.1| teicoplanin resistance associated protein A [Staphylococcus aureus
           A5948]
 gi|282925246|ref|ZP_06332905.1| teicoplanin resistance associated membrane protein TcaA
           [Staphylococcus aureus A9765]
 gi|284025379|ref|ZP_06379777.1| teicoplanin resistance associated membrane protein TcaA protein
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848898|ref|ZP_06789643.1| teicoplanin resistance associated membrane protein TcaA
           [Staphylococcus aureus A9754]
 gi|304379548|ref|ZP_07362282.1| Teicoplanin resistance protein TcaA [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|122540630|sp|Q2G2I1|TCAA_STAA8 RecName: Full=Membrane-associated protein tcaA
 gi|123484654|sp|Q2FEE1|TCAA_STAA3 RecName: Full=Membrane-associated protein tcaA
 gi|189029835|sp|A6QJJ7|TCAA_STAAE RecName: Full=Membrane-associated protein tcaA
 gi|189029836|sp|A8Z547|TCAA_STAAT RecName: Full=Membrane-associated protein tcaA
 gi|87127147|gb|ABD21661.1| teicoplanin resistance associated membrane protein TcaA protein
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87203834|gb|ABD31644.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150375269|dbj|BAF68529.1| teicoplanin resistance associated protein A [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|160369359|gb|ABX30330.1| teicoplanin resistance protein TcaA [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253727923|gb|EES96652.1| teicoplanin resistance associated membrane protein TcaA protein
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|257859701|gb|EEV82545.1| teicoplanin resistance associated protein A [Staphylococcus aureus
           A5948]
 gi|269941941|emb|CBI50352.1| teicoplanin resistance associated membraneprotein [Staphylococcus
           aureus subsp. aureus TW20]
 gi|282592647|gb|EFB97656.1| teicoplanin resistance associated membrane protein TcaA
           [Staphylococcus aureus A9765]
 gi|294824277|gb|EFG40701.1| teicoplanin resistance associated membrane protein TcaA
           [Staphylococcus aureus A9754]
 gi|302752227|gb|ADL66404.1| teicoplanin resistance associated membrane protein TcaA protein
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304341893|gb|EFM07798.1| Teicoplanin resistance protein TcaA [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|315198099|gb|EFU28430.1| teicoplanin resistance protein TcaA [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320140102|gb|EFW31961.1| TcaA protein [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143371|gb|EFW35152.1| TcaA protein [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329726064|gb|EGG62537.1| TcaA protein [Staphylococcus aureus subsp. aureus 21189]
          Length = 460

 Score = 37.9 bits (87), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F +     +   +       F D +  R S       SL+ I   +II+A    + +  
Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
           T+R++ +      DK+  L     +    + 
Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456


>gi|57650900|ref|YP_187158.1| tcaA protein [Staphylococcus aureus subsp. aureus COL]
 gi|81693864|sp|Q5HDJ9|TCAA_STAAC RecName: Full=Membrane-associated protein tcaA; AltName:
           Full=Teicoplanin-associated protein A
 gi|10946544|gb|AAG23888.1| TcaA [Staphylococcus aureus subsp. aureus COL]
 gi|57285086|gb|AAW37180.1| tcaA protein [Staphylococcus aureus subsp. aureus COL]
          Length = 460

 Score = 37.9 bits (87), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F +     +   +       F D +  R S       SL+ I   +II+A    + +  
Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
           T+R++ +      DK+  L     +    + 
Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456


>gi|82751951|ref|YP_417692.1| bicyclomycin and teicoplanin resistance protein [Staphylococcus
           aureus RF122]
 gi|123549387|sp|Q2YYX9|TCAA_STAAB RecName: Full=Membrane-associated protein tcaA
 gi|82657482|emb|CAI81924.1| bicyclomycin and teicoplanin resistance protein [Staphylococcus
           aureus RF122]
          Length = 460

 Score = 37.9 bits (87), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F +     +   +       F D +  R S       SL+ I   +II+A    + +  
Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
           T+R++ +      DK+  L     +    + 
Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456


>gi|49487139|ref|YP_044360.1| teicoplanin resistance associated membrane protein [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|297209826|ref|ZP_06926222.1| teicoplanin resistance protein TcaA [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|81648743|sp|Q6G6W4|TCAA_STAAS RecName: Full=Membrane-associated protein tcaA
 gi|49245582|emb|CAG44060.1| teicoplanin resistance associated membrane protein [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|296885499|gb|EFH24436.1| teicoplanin resistance protein TcaA [Staphylococcus aureus subsp.
           aureus ATCC 51811]
          Length = 460

 Score = 37.9 bits (87), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F +     +   +       F D +  R S       SL+ I   +II+A    + +  
Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
           T+R++ +      DK+  L     +    + 
Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456


>gi|21284006|ref|NP_647094.1| TcaA protein [Staphylococcus aureus subsp. aureus MW2]
 gi|300910838|ref|ZP_07128288.1| teicoplanin resistance protein TcaA [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|81762078|sp|Q8NV48|TCAA_STAAW RecName: Full=Membrane-associated protein tcaA
 gi|21205449|dbj|BAB96142.1| TcaA protein [Staphylococcus aureus subsp. aureus MW2]
 gi|300887818|gb|EFK83013.1| teicoplanin resistance protein TcaA [Staphylococcus aureus subsp.
           aureus TCH70]
          Length = 460

 Score = 37.9 bits (87), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F +     +   +       F D +  R S       SL+ I   +II+A    + +  
Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
           T+R++ +      DK+  L     +    + 
Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456


>gi|15925346|ref|NP_372880.1| TcaA protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927936|ref|NP_375469.1| TcaA protein [Staphylococcus aureus subsp. aureus N315]
 gi|156980671|ref|YP_001442930.1| TcaA protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|255007132|ref|ZP_05145733.2| TcaA protein [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|81705170|sp|Q7A3X6|TCAA_STAAN RecName: Full=Membrane-associated protein tcaA
 gi|81781026|sp|Q99RS0|TCAA_STAAM RecName: Full=Membrane-associated protein tcaA
 gi|189029832|sp|A7X5X6|TCAA_STAA1 RecName: Full=Membrane-associated protein tcaA
 gi|13702307|dbj|BAB43448.1| TcaA protein [Staphylococcus aureus subsp. aureus N315]
 gi|14248130|dbj|BAB58518.1| TcaA protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|156722806|dbj|BAF79223.1| TcaA protein [Staphylococcus aureus subsp. aureus Mu3]
          Length = 460

 Score = 37.9 bits (87), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F +     +   +       F D +  R S       SL+ I   +II+A    + +  
Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
           T+R++ +      DK+  L     +    + 
Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456


>gi|241688874|ref|XP_002411729.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215504549|gb|EEC14043.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 270

 Score = 37.9 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 14/94 (14%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD----SRV---YQDFNDSLSTRKS 147
              ++  +FLN A+ +   +      G   ++E LV     S V   Y  F +    R+ 
Sbjct: 120 DRSYNQTEFLNGAKQALTYVSALVARGDFKSLEGLVASPTISEVQRNYSRFTE--EQRQK 177

Query: 148 NEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
              +V+ + +    +  I   +++       R V
Sbjct: 178 --LSVELTDIYFCFLYQIGIIMDDRNDQ---RFV 206


>gi|195489883|ref|XP_002092927.1| GE14459 [Drosophila yakuba]
 gi|194179028|gb|EDW92639.1| GE14459 [Drosophila yakuba]
          Length = 267

 Score = 37.9 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS-----TRKS-- 147
            ++F  K+F+  A+ + + +      G + +++ LV      +    +       R+   
Sbjct: 105 DSEFQLKEFIYGAKQALQVVSSKLMGGDLDSLDNLVSPEAIAELRPVIQKLSMTQRRQLE 164

Query: 148 -NEKNVKSSLVGIDDMKIINA--SIEENTVYITIRI-VGQFISASYDKDNLL 195
             E ++  S      +   +A   +++  V IT+   V + +S   ++   +
Sbjct: 165 IKESDIYLSFPYQVGIMFDDANDKLQKRFVEITMVFHVMRGLSEMRERGEEI 216


>gi|119945053|ref|YP_942733.1| hypothetical protein Ping_1308 [Psychromonas ingrahamii 37]
 gi|119863657|gb|ABM03134.1| hypothetical protein Ping_1308 [Psychromonas ingrahamii 37]
          Length = 561

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/122 (10%), Positives = 39/122 (31%), Gaps = 10/122 (8%)

Query: 89  RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148
             I  +   F      +   N++  I  ++ E  +      +   + + +      +K  
Sbjct: 50  NKIRHLDKHFSTALITSRVENAFYIIKQAWSEQDISYSRAFISDGISESYQIQFEIQKKQ 109

Query: 149 EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208
           +   K   + I + +++    +++   +  +I          + +  I    +   K  D
Sbjct: 110 QHRRKIENLIITNSELVGIEADKHFETLHFKITS--------RADYPIE--IKGRNKQTD 159

Query: 209 IW 210
            W
Sbjct: 160 SW 161


>gi|324523301|gb|ADY48225.1| 39S ribosomal protein L45 [Ascaris suum]
          Length = 171

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 21/55 (38%)

Query: 171 ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
            +   +T+R+      A YDK   LI         V++   F  +I   +  W L
Sbjct: 56  NDIAQLTVRMHTVQKLAIYDKFGRLILGSEVEPKAVVEYVVFENHIASLDGAWRL 110


>gi|196001951|ref|XP_002110843.1| hypothetical protein TRIADDRAFT_54172 [Trichoplax adhaerens]
 gi|190586794|gb|EDV26847.1| hypothetical protein TRIADDRAFT_54172 [Trichoplax adhaerens]
          Length = 302

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 14/37 (37%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
           DF    FL  A  + + I D+        IE L+   
Sbjct: 111 DFSKDSFLEGANQAMKMICDAISTDDYSRIEDLLSPE 147


>gi|226941931|ref|YP_002797005.1| hypothetical protein LHK_03018 [Laribacter hongkongensis HLHK9]
 gi|226716858|gb|ACO75996.1| hypothetical protein LHK_03018 [Laribacter hongkongensis HLHK9]
          Length = 333

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/192 (9%), Positives = 52/192 (27%), Gaps = 29/192 (15%)

Query: 42  SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPK 101
           +G                I          +          TRL                 
Sbjct: 170 AGMVPPNARAPLNPNAFKINPTGSVPVPPIGGGYAQPAALTRLPDGTE----------VP 219

Query: 102 DFLNEARNSYEAIVDSFFEGK-VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160
            F+ +A+ ++   + S      V  + K +   +++     ++          +    +D
Sbjct: 220 HFVRQAKATF-MHLQSMNNPDNVEEVRKYLTPELFEQLRADIA-----GNPETADFPQLD 273

Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN 220
              +  ++  +  +  ++R              L+  S         + W F+++   ++
Sbjct: 274 CQVVDASTEADGRIVASVRFS-----------GLVSESVGAPALPFAETWHFIKS-DATS 321

Query: 221 PNWVLISTKLGE 232
             WV+   +  +
Sbjct: 322 QKWVVAGIQQDQ 333


>gi|326922533|ref|XP_003207503.1| PREDICTED: uncharacterized protein C2orf47 homolog,
           mitochondrial-like, partial [Meleagris gallopavo]
          Length = 170

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 23/48 (47%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
            ++F  ++F   A+ ++  +     + K+  ++ LV + V Q   + +
Sbjct: 14  DSEFSIEEFTRGAKQAFSVVSQLLSQRKLDLLDGLVSAEVLQMLKEKI 61


>gi|168703587|ref|ZP_02735864.1| hypothetical protein GobsU_28900 [Gemmata obscuriglobus UQM 2246]
          Length = 269

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/93 (11%), Positives = 28/93 (30%), Gaps = 9/93 (9%)

Query: 19  ITFFVFLQLRGVL--GKKTGNEKPFSGFFSGKYVFSKRDERGIIT-------LGKGKKKD 69
           +  F+  +LR VL  G + G  +P       +   +++    +         + +     
Sbjct: 121 MAEFLVGRLRAVLPAGTRVGFLEPDFRRPLAQLARAEQQRPELAPLLTFARAINELYAAR 180

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKD 102
            +                 R++  V+  F   +
Sbjct: 181 RISPAVGASLAPAMYESGYREVKHVWHPFATDE 213


>gi|20130393|ref|NP_611989.1| CG3776 [Drosophila melanogaster]
 gi|7291887|gb|AAF47306.1| CG3776 [Drosophila melanogaster]
 gi|17944240|gb|AAL48014.1| LD24657p [Drosophila melanogaster]
 gi|220944864|gb|ACL84975.1| Jhebp29-PA [synthetic construct]
 gi|220954772|gb|ACL89929.1| Jhebp29-PA [synthetic construct]
          Length = 263

 Score = 37.9 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS-----TRKS-- 147
            ++F  KDF+  A+ + + +      G + +++ LV      +    +       R+   
Sbjct: 101 DSEFQLKDFIYGAKQALQVVSSKLMGGDLDSLDNLVSPEAIAELRPVIQKLSMTQRRQLE 160

Query: 148 -NEKNVKSSLVGIDDMKIINA--SIEENTVYITIRI-VGQFISASYDKDNLL 195
             E ++  S      +   +A   +++  V IT+   V + +S   ++   +
Sbjct: 161 IKESDIYLSFPYQVGIMFDDANDKLQKRFVEITMVFHVMRGLSEMRERGEEI 212


>gi|319784486|ref|YP_004143962.1| hypothetical protein Mesci_4803 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170374|gb|ADV13912.1| hypothetical protein Mesci_4803 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 257

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/100 (10%), Positives = 26/100 (26%), Gaps = 8/100 (8%)

Query: 38  EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
           E P +       +        +          +  +        +  +  +     V  D
Sbjct: 42  ELPPTVTPPADDMSPPGSTVPMPNPVGTPPPSSQPTAPAEAEPDSPADGGVTR-PRVDPD 100

Query: 98  -------FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
                  +D        R  ++ IV++   G +  +  L+
Sbjct: 101 TPVPEVIYDLGKLPEPVRRMHDLIVEACKGGDIEKLRPLI 140


>gi|17545005|ref|NP_518407.1| hypothetical protein RSc0286 [Ralstonia solanacearum GMI1000]
 gi|17427295|emb|CAD13814.1| probable cell division ftsn transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 238

 Score = 37.9 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/149 (10%), Positives = 42/149 (28%), Gaps = 21/149 (14%)

Query: 37  NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT 96
           N+             + +      ++   +    +       P+   + ++ R   +   
Sbjct: 103 NQPGTQPGTQPASQATPKPAEPGSSVAMQRPPKPVTPAPAEKPVADPIAEIARQDAAKTG 162

Query: 97  DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS- 155
            F      + A  +         +G +            Q F   ++ R+ N        
Sbjct: 163 YFLQVGAYDSAEYAERQ------KGNLA----------MQGFEAKVTQREVNGSTKYRVR 206

Query: 156 ---LVGIDDMKIINASIEENTVYITI-RI 180
                 +D+M  + + ++ + V  T+ R 
Sbjct: 207 LGPFNSLDEMTAVRSRLQASGVESTVIRF 235


>gi|91228595|ref|ZP_01262513.1| hypothetical protein V12G01_00367 [Vibrio alginolyticus 12G01]
 gi|91187827|gb|EAS74141.1| hypothetical protein V12G01_00367 [Vibrio alginolyticus 12G01]
          Length = 148

 Score = 37.5 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFS 52
           IL+   I F +F  +RG+LG K G      ++P  G  + K+   
Sbjct: 96  ILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQP 140


>gi|311272864|ref|XP_003133619.1| PREDICTED: uncharacterized protein C2orf47 homolog,
           mitochondrial-like [Sus scrofa]
          Length = 288

 Score = 37.5 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 19/49 (38%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
             +F   +F   A+ ++  +     + K   +E+LV         + ++
Sbjct: 133 DQEFSIAEFSEGAKQAFSHVSKLLSQCKFDLLEELVAKEALHVLKEKVT 181


>gi|153838005|ref|ZP_01990672.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
 gi|149748613|gb|EDM59472.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
          Length = 168

 Score = 37.5 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 13  ILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFS 52
           IL+   I F +F  +RG+LG K G      ++P  G  + K+   
Sbjct: 96  ILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNASKFEQP 140


>gi|283959137|ref|ZP_06376578.1| TcaA protein [Staphylococcus aureus subsp. aureus A017934/97]
 gi|283788729|gb|EFC27556.1| TcaA protein [Staphylococcus aureus subsp. aureus A017934/97]
          Length = 460

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F +     +   +       F D +  R S       SL+ I   +II+A    + +  
Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
           T+R+V +      DK+  L     +    + 
Sbjct: 427 TVRLVNENGKQV-DKEYELEQGPQDRLQLIK 456


>gi|49484571|ref|YP_041795.1| teicoplanin resistance associated membrane protein [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257423838|ref|ZP_05600267.1| teicoplanin resistance associated membrane protein [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257426521|ref|ZP_05602923.1| teicoplanin resistance associated membrane protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257429157|ref|ZP_05605544.1| teicoplanin resistance associated membrane protein [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257431803|ref|ZP_05608166.1| teicoplanin resistance associated membrane protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257434763|ref|ZP_05610814.1| teicoplanin resistance associated membrane protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282902268|ref|ZP_06310161.1| TcaA protein [Staphylococcus aureus subsp. aureus C160]
 gi|282906697|ref|ZP_06314545.1| membrane-associated protein tcaA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282909673|ref|ZP_06317482.1| teicoplanin resistance associated membrane protein [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282911919|ref|ZP_06319715.1| teicoplanin resistance associated membrane protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282915215|ref|ZP_06322992.1| TcaA protein [Staphylococcus aureus subsp. aureus M899]
 gi|282920939|ref|ZP_06328657.1| membrane-associated protein tcaA [Staphylococcus aureus subsp.
           aureus C427]
 gi|282925845|ref|ZP_06333493.1| membrane-associated protein tcaA [Staphylococcus aureus subsp.
           aureus C101]
 gi|293497611|ref|ZP_06665465.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293511190|ref|ZP_06669886.1| membrane-associated protein tcaA [Staphylococcus aureus subsp.
           aureus M809]
 gi|293549798|ref|ZP_06672470.1| TcaA protein [Staphylococcus aureus subsp. aureus M1015]
 gi|295428937|ref|ZP_06821561.1| membrane-associated protein tcaA [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297589568|ref|ZP_06948209.1| Teicoplanin resistance protein TcaA [Staphylococcus aureus subsp.
           aureus MN8]
 gi|81650499|sp|Q6GE78|TCAA_STAAR RecName: Full=Membrane-associated protein tcaA
 gi|49242700|emb|CAG41424.1| teicoplanin resistance associated membrane protein [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257272856|gb|EEV04958.1| teicoplanin resistance associated membrane protein [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257276152|gb|EEV07603.1| teicoplanin resistance associated membrane protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257279638|gb|EEV10225.1| teicoplanin resistance associated membrane protein [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257282682|gb|EEV12814.1| teicoplanin resistance associated membrane protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257285359|gb|EEV15475.1| teicoplanin resistance associated membrane protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282312674|gb|EFB43078.1| membrane-associated protein tcaA [Staphylococcus aureus subsp.
           aureus C101]
 gi|282315354|gb|EFB45738.1| membrane-associated protein tcaA [Staphylococcus aureus subsp.
           aureus C427]
 gi|282320936|gb|EFB51270.1| TcaA protein [Staphylococcus aureus subsp. aureus M899]
 gi|282323615|gb|EFB53931.1| teicoplanin resistance associated membrane protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282326247|gb|EFB56551.1| teicoplanin resistance associated membrane protein [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282329596|gb|EFB59117.1| membrane-associated protein tcaA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282596727|gb|EFC01686.1| TcaA protein [Staphylococcus aureus subsp. aureus C160]
 gi|290918845|gb|EFD95921.1| TcaA protein [Staphylococcus aureus subsp. aureus M1015]
 gi|291096542|gb|EFE26800.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291465816|gb|EFF08346.1| membrane-associated protein tcaA [Staphylococcus aureus subsp.
           aureus M809]
 gi|295127286|gb|EFG56928.1| membrane-associated protein tcaA [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297578079|gb|EFH96792.1| Teicoplanin resistance protein TcaA [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312437228|gb|ADQ76299.1| Teicoplanin resistance protein TcaA [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315193621|gb|EFU24017.1| teicoplanin resistance associated membrane protein [Staphylococcus
           aureus subsp. aureus CGS00]
          Length = 460

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
           +F +     +   +       F D +  R S       SL+ I   +II+A    + +  
Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
           T+R+V +      DK+  L     +    + 
Sbjct: 427 TVRLVNENGKQV-DKEYELEQGPQDRLQLIK 456


>gi|328701155|ref|XP_001951633.2| PREDICTED: uncharacterized protein C2orf47 homolog,
           mitochondrial-like [Acyrthosiphon pisum]
 gi|239789772|dbj|BAH71488.1| ACYPI004057 [Acyrthosiphon pisum]
          Length = 279

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 41/106 (38%), Gaps = 14/106 (13%)

Query: 92  VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151
             +  DF   +F   +R + E + +   +     ++ LV + V +     +S        
Sbjct: 119 PQLDKDFSLGEFAKNSRKAVEVVSNCISKRDFTTLQGLVTNDVLEQVKSIVSD------- 171

Query: 152 VKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197
                  ++D +I + + + + +Y+ + +    I+ +  KD   + 
Sbjct: 172 -------LNDNEIKDMAFDNDDMYLFLPVQLDIINDTKLKDRRFVE 210


>gi|225375951|ref|ZP_03753172.1| hypothetical protein ROSEINA2194_01588 [Roseburia inulinivorans DSM
           16841]
 gi|225212204|gb|EEG94558.1| hypothetical protein ROSEINA2194_01588 [Roseburia inulinivorans DSM
           16841]
          Length = 197

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 56/175 (32%), Gaps = 18/175 (10%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M++   +I++ A +                G           + V         +  G  
Sbjct: 1   MNNWIPVIVILAVLAG-------------GGYYAYRKIKRKVEDVSQALFGTDSLVEGWN 47

Query: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
           K+ D L +  +     TR+ +    I   + DF+   F N+A N   + + +   G V  
Sbjct: 48  KQADELAATPKSVSGMTRIFEP--QIQRDFPDFNLVQFKNKAENMLVSALQAIDSGNVSL 105

Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
           I       +     + +   +S         + I   +I N   E+N   +++  
Sbjct: 106 IRD-ASEELKAQVENRIEMNRSEGIREVYEKIRIHRTEISN--YEKNRENVSLHF 157


>gi|134085699|ref|NP_001076875.1| hypothetical protein LOC510566 precursor [Bos taurus]
 gi|158513402|sp|A3KN05|CB047_BOVIN RecName: Full=Uncharacterized protein C2orf47 homolog,
           mitochondrial; Flags: Precursor
 gi|126717401|gb|AAI33464.1| C2H2orf47 protein [Bos taurus]
 gi|296490429|gb|DAA32542.1| hypothetical protein LOC510566 precursor [Bos taurus]
          Length = 291

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 19/49 (38%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
             +F   +F   A+ ++  +     + K   +E+LV         + ++
Sbjct: 136 DQEFSITEFSEGAKQAFAHVSKLLSQCKFDLLEELVAKETLHVLKEKVT 184


>gi|297193178|ref|ZP_06910576.1| 2,4-dienoyl-CoA reductase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151675|gb|EFH31303.1| 2,4-dienoyl-CoA reductase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 684

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 34/95 (35%), Gaps = 21/95 (22%)

Query: 25  LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPI---- 80
           ++LR  LG + G             + +   +  ++  G   +  ++D ++    +    
Sbjct: 453 VRLR--LGTRVG----------ADDLPAADFDEVVVATGVTPRTPDIDGVDHPSVVSYLD 500

Query: 81  ----GTRLNKVMRDIVSVYTDFDPKDFL-NEARNS 110
               G  + + +  I +    FD  +FL +    +
Sbjct: 501 VLRDGAPVGERVAVIGAGGIGFDVAEFLTDGGEGA 535


>gi|323691491|ref|ZP_08105762.1| hypothetical protein HMPREF9475_00624 [Clostridium symbiosum
           WAL-14673]
 gi|323504464|gb|EGB20255.1| hypothetical protein HMPREF9475_00624 [Clostridium symbiosum
           WAL-14673]
          Length = 221

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND-SLSTRKSNEKNVKSSLVGIDDMKIIN 166
           R + E +  +F +  ++ +  L    V   F    L+  KS E+ +      I   K+ +
Sbjct: 2   RKAAEQVQKAFEKKDLNKLADLCSYPVVVSFKSGELAELKSKEEFMALGSQTIFTQKMTD 61

Query: 167 ASIEENTVYIT 177
           A    N   +T
Sbjct: 62  AIASTNVAKLT 72


>gi|323483063|ref|ZP_08088456.1| hypothetical protein HMPREF9474_00205 [Clostridium symbiosum
           WAL-14163]
 gi|323403603|gb|EGA95908.1| hypothetical protein HMPREF9474_00205 [Clostridium symbiosum
           WAL-14163]
          Length = 265

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND-SLSTRKSNEKNVKSSLVGIDDMKIIN 166
           R + E +  +F +  ++ +  L    V   F    L+  KS E+ +      I   K+ +
Sbjct: 46  RKAAEQVQKAFEKKDLNKLADLCSYPVVVSFKSGELAELKSKEEFMALGSQTIFTQKMTD 105

Query: 167 ASIEENTVYIT 177
           A    N   +T
Sbjct: 106 AIASTNVAKLT 116


>gi|195121668|ref|XP_002005342.1| GI20427 [Drosophila mojavensis]
 gi|193910410|gb|EDW09277.1| GI20427 [Drosophila mojavensis]
          Length = 226

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 45/116 (38%), Gaps = 19/116 (16%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS-----TRKSNE 149
            ++F  KDF+  A+ + + +      G +  ++ LV      +    +       RK   
Sbjct: 64  DSEFQIKDFVYGAKQALQVVSSKLVGGDLSQLQDLVTPEAIAELKPVVQKLSMTQRKQL- 122

Query: 150 KNVKSSL-------VGIDDMKIINA--SIEENTVYITIRI-VGQFISASYDKDNLL 195
           +  +S +       +GI      +A   +++  V IT+   V + ++   ++   +
Sbjct: 123 EIHESDIYLSFPYQIGI---MFDDANDKLQKRWVEITMVFHVMRGLTEMRERGEEI 175


>gi|297582623|ref|YP_003698403.1| glycerophosphoryl diester phosphodiesterase [Bacillus
           selenitireducens MLS10]
 gi|297141080|gb|ADH97837.1| glycerophosphoryl diester phosphodiesterase [Bacillus
           selenitireducens MLS10]
          Length = 341

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT-----IRIVGQFISASYDKDN 193
              ++ R ++    +S+   ID    ++A   E  + IT     +      IS + D + 
Sbjct: 70  VKVIAHRGASGHAPESTTHAIDKAIEMDADWIELDIQITADGHLVAFHDDEISRTTDGEG 129

Query: 194 LLISSDPEIFGK 205
            +     +   +
Sbjct: 130 EIGDHTLDELKE 141


>gi|42522681|ref|NP_968061.1| hypothetical protein Bd1136 [Bdellovibrio bacteriovorus HD100]
 gi|39573877|emb|CAE79054.1| hypothetical protein predicted by Glimmer/Critica [Bdellovibrio
           bacteriovorus HD100]
          Length = 139

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 38/134 (28%), Gaps = 17/134 (12%)

Query: 6   MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
           M+S DFL L       F+   L      + G+ +P     + K       E         
Sbjct: 1   MNSQDFLTLNLVGAGAFIAWYLLS----RGGSRRPTQLNLNAKDSAPPLMEAAPPEKAGL 56

Query: 66  KKKDNLDSINELFPIGTR-----LNKVMRDIVSVYTDFDPKDFLNEA-----RNSYEAIV 115
           +      S  ++ P  +      LN +       +  ++       A       +Y    
Sbjct: 57  EPLRRQASTPQVHPDLSGVKTKCLNVMFNYNGHSWDAYEVLGVPAGASLKLVTEAY---Q 113

Query: 116 DSFFEGKVHAIEKL 129
            +       ++E L
Sbjct: 114 TAIRRSDKESLEFL 127


>gi|195029603|ref|XP_001987661.1| GH19839 [Drosophila grimshawi]
 gi|193903661|gb|EDW02528.1| GH19839 [Drosophila grimshawi]
          Length = 226

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS-----TRKS-- 147
            ++F  KDF+  A+ + + +      G ++ ++ LV      +    +       RK   
Sbjct: 64  DSEFQIKDFIFGAKQALQVVSSKLVGGDLNQLQDLVTPDAIAELKPVIQKLSMTQRKQLE 123

Query: 148 -NEKNVKSSLVGIDDMKIINA--SIEENTVYITIRI 180
            NE ++  S      +   +A   +++  V IT+  
Sbjct: 124 INESDIYLSFPYQIGIMFDDANDKLQKRWVEITMVF 159


>gi|15672597|ref|NP_266771.1| hypothetical protein L3407 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723512|gb|AAK04713.1|AE006294_8 unknown protein [Lactococcus lactis subsp. lactis Il1403]
 gi|326406115|gb|ADZ63186.1| conserved hypothetical protein [Lactococcus lactis subsp. lactis
           CV56]
          Length = 243

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 12/105 (11%)

Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV---GIDDMKIINASIE 170
           + D++ +  + A+ +     +Y+     L       +   +  V   GI   K     ++
Sbjct: 130 VQDAWDKHDLRALSESYGDNLYEKHEKILQKMSDKGQINHTRSVVLDGIMRYK----EVK 185

Query: 171 ENTVYITIRIVG--QFISASYDKDNLLISSDPEIFGKVIDIWTFV 213
           +N   + +  V     +S        +I+ + +        WTF 
Sbjct: 186 DNQFEVDLYFVAIDYLVSV---NSGQIIAGNTQERRAFKQRWTFS 227


>gi|78485054|ref|YP_390979.1| fatty acid/phospholipid synthesis protein PlsX [Thiomicrospira
           crunogena XCL-2]
 gi|123555757|sp|Q31HR8|PLSX_THICR RecName: Full=Phosphate acyltransferase; AltName: Full=Acyl-ACP
           phosphotransacylase; AltName:
           Full=Acyl-[acyl-carrier-protein]--phosphate
           acyltransferase; AltName: Full=Phosphate-acyl-ACP
           acyltransferase
 gi|78363340|gb|ABB41305.1| phosphate:acyl-[acyl carrier protein] acyltransferase
           [Thiomicrospira crunogena XCL-2]
          Length = 337

 Score = 37.2 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 12/141 (8%)

Query: 29  GVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87
            VL +    N +P  G  +      K  +R        K  D ++ +  +   G  + K 
Sbjct: 163 SVLAQAVDSNSRPRVGLLNIGEEEIKGHQRIKDANEILKSSDAINYVGYV--EGDEIFKG 220

Query: 88  MRDIVSVYTDFDPKDFLNEARNSYEAIV----DSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
             D+VS    FD    L  +    + I      +F +  +  +  LV   V + F   + 
Sbjct: 221 DVDVVSCD-GFDGNVALKASEGVAKMISFYLRAAFNKNLLTKLAGLVVYPVLKAFKAKVD 279

Query: 144 TRKSNEKNVKSSLVGIDDMKI 164
            R+ N     +S +G+  + I
Sbjct: 280 PRRYNG----ASFLGLRKIVI 296


>gi|297571195|ref|YP_003696969.1| translation initiation factor IF-2 [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931542|gb|ADH92350.1| translation initiation factor IF-2 [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 971

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 36/125 (28%), Gaps = 11/125 (8%)

Query: 33  KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIV 92
           K+   E+  S    G  +        +         D  + I+        +   M ++ 
Sbjct: 349 KRQEWEEQQSPMLQGVQIPRGDGSTVVRVRAGASLADFAERIDADPAALVTVLFRMGEMA 408

Query: 93  SVYTDFDPKDF-LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151
           +     D   F L  A   Y+  + S  +     +         + F+  +   +   ++
Sbjct: 409 TANQSLDEDTFALLGAELGYDIKIMSAEDEDREIL---------ESFDIDIDA-EHAGES 458

Query: 152 VKSSL 156
            +  L
Sbjct: 459 DEDRL 463


>gi|323701289|ref|ZP_08112964.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533891|gb|EGB23755.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum nigrificans
           DSM 574]
          Length = 459

 Score = 37.2 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 56/209 (26%), Gaps = 43/209 (20%)

Query: 16  FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
            A +            G+  G           ++  +KR  + I  +   K  D+     
Sbjct: 285 LAVVAV----------GRYVGLSFSQIAAALREFKGAKRRYQLIGEVKGAKIVDDYAHHP 334

Query: 76  ELFPIGTRLNKVMRDIVSVYTD-----FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
                 T +   ++     +       F P  F    R  +    +SF    +     L+
Sbjct: 335 ------TEIKATLQAARQAHPGRIIAVFQPHRFTR-TRQLFREFGESFAHADI-----LI 382

Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
            + +Y      +               G+    I++A  +       +  +     A+  
Sbjct: 383 LTDIYPAGEKPIE--------------GVHTKLIVDAIAKRPNQQ--VIYLPTLEEATNF 426

Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
               +   D  +     D+WT  R +   
Sbjct: 427 LTQQVTEGDLVLTMGAGDVWTVGRELLQR 455


>gi|312384625|gb|EFR29310.1| hypothetical protein AND_01857 [Anopheles darlingi]
          Length = 221

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS----RVYQDFND-SLSTR 145
             DF+  DF+  A+ + + +  +   G+   +E LVD      V Q  +  S++ R
Sbjct: 61  DRDFNIPDFVIGAKQALQVVSLALAGGEAKQLEGLVDRVALNDVKQSLSKMSVAER 116


>gi|146412672|ref|XP_001482307.1| hypothetical protein PGUG_05327 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146393071|gb|EDK41229.1| hypothetical protein PGUG_05327 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 420

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 44/141 (31%), Gaps = 8/141 (5%)

Query: 80  IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137
             T   KV++ +  +   F   DF     N Y    ++D++ +     +++ +    +  
Sbjct: 255 AETEQAKVIKQLRQIDPSFRITDFTRTLTN-YIVPELLDAYIKNDDKVLKQWLSEAPFNV 313

Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG----QFISASYDKDN 193
           +  +              ++ I  + I+   + +    I + +V     +       K  
Sbjct: 314 WQANNKQFVQQGLFSDGRILDIRGVDIVTCKMLQPN-EIPVVVVSCRAQEIHLFRKAKTG 372

Query: 194 LLISSDPEIFGKVIDIWTFVR 214
            + +   +          F R
Sbjct: 373 EVAAGTEDHIQLSTYAMVFTR 393


>gi|284038224|ref|YP_003388154.1| amidase [Spirosoma linguale DSM 74]
 gi|283817517|gb|ADB39355.1| Amidase [Spirosoma linguale DSM 74]
          Length = 526

 Score = 36.8 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 43/140 (30%), Gaps = 16/140 (11%)

Query: 35  TGNEKPFSGFFSGKYVFS---KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDI 91
            G  +P  G  S   +       D  G I          LD I       T   +    I
Sbjct: 220 VGF-RPTLGLVSRDGIAPLAMTNDTGGPICRTVEDAVRVLDVIAGYDKADTVTKRSAGKI 278

Query: 92  VSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEK 150
              Y  F  KD L  AR   +  +V               D +VY  FN +L   ++   
Sbjct: 279 PQTYRQFLDKDGLKGARIGVFRQMVMPKNS----------DPQVYALFNKALDELRAAGA 328

Query: 151 NVKSSLVGIDDMKIINASIE 170
            V    V +  +  IN S +
Sbjct: 329 IV-IDSVRVPQLDTINKSFD 347


>gi|145348931|ref|XP_001418895.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579125|gb|ABO97188.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 347

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 11/136 (8%)

Query: 38  EKPFSGFFSGKYVFSKRDERGIITLGK----GKKKDNLDSINELFPIGTRLNKVMRDIVS 93
           E+  S   S       R  RG               +   +++  PI  R    +R + +
Sbjct: 14  ERRASTPASTSSRVPARTRRGAPPRAGFGAAVPTARSAAVLDKHVPID-RYADGLRQLHA 72

Query: 94  VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153
               F   DFL+    + + I  +  +G +          VY  + + +    S   +  
Sbjct: 73  SPDVFVVDDFLSADACA-DIIARAKAKGDMTQ-----SPVVYAGWTNDVEAWTSTVSSGP 126

Query: 154 SSLVGIDDMKIINASI 169
           +  +G   M I +A+ 
Sbjct: 127 AVWIGALAMLIGSAAF 142


>gi|301101505|ref|XP_002899841.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262102843|gb|EEY60895.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 285

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 53/165 (32%), Gaps = 38/165 (23%)

Query: 102 DFLNEARNSYEAIVDS--------FFEG------KVHAIEKLVDSRVYQDFNDS----LS 143
           +FL  A+ + +A + +        +  G          +      R +++  ++    L 
Sbjct: 88  EFLEGAKMAAKAQLKAVNSKDFAEYAAGIASESKAAEELSNFCTPRFFENLREAAADTLR 147

Query: 144 TR----KSNEKNVKSSLV-GIDDMKIINASIEENTVYITI--------------RIVGQF 184
            R    +  + NV+S +V G+   ++     E  T  + +              +I  Q 
Sbjct: 148 DRNMTLELQDINVESIVVAGVRYAQLTQTEYEAQTAGLAVLPFFWASDASIEYMQIHVQT 207

Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP-SNPNWVLIST 228
            S    K  L+   +          WTF   +       W ++ T
Sbjct: 208 RSLETTKMTLIGQEECFALQDNSRTWTFGSKVGSVEELEWRIVKT 252


>gi|314933179|ref|ZP_07840544.1| ATP-dependent nuclease subunit A [Staphylococcus caprae C87]
 gi|313653329|gb|EFS17086.1| ATP-dependent nuclease subunit A [Staphylococcus caprae C87]
          Length = 1218

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 35/103 (33%), Gaps = 22/103 (21%)

Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167
           + +YE I+ SF               ++  F++     +   + V+     I    +I  
Sbjct: 225 KAAYEEIIKSFN--------------LFSMFDNV----EKQLEVVEDERRFISK--VIEG 264

Query: 168 SIEENTVYITIRIVGQFISASY--DKDNLLISSDPEIFGKVID 208
            +      ++ + V +F S +    + N  +    +   K  D
Sbjct: 265 DMINTDALVSHQFVSRFPSITKKIKEANEGMEEALDDAKKHYD 307


>gi|158298862|ref|XP_319011.4| AGAP009891-PA [Anopheles gambiae str. PEST]
 gi|157014090|gb|EAA14399.5| AGAP009891-PA [Anopheles gambiae str. PEST]
          Length = 285

 Score = 36.8 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
             +F   +F+   + + + +  S   G+V  +E LVD     D   SL+
Sbjct: 125 DREFSLPEFIQGTKQALQVVSSSLAGGEVKQLEGLVDRAALADLKQSLA 173


>gi|327291848|ref|XP_003230632.1| PREDICTED: uncharacterized protein C2orf47 homolog,
           mitochondrial-like, partial [Anolis carolinensis]
          Length = 183

 Score = 36.8 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 20/48 (41%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
             +F   +F   A+ ++  +     + K   +E+LV   + Q   + L
Sbjct: 103 DQEFSIHEFTEGAKQAFAHVSRLIAQCKYDLLEELVSKEMVQILKEKL 150


>gi|82617538|ref|NP_001032303.1| hypothetical protein LOC552941 [Danio rerio]
 gi|81097772|gb|AAI09475.1| Zgc:123096 [Danio rerio]
 gi|157423611|gb|AAI53656.1| Zgc:123096 protein [Danio rerio]
          Length = 243

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 18/40 (45%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134
             +F  ++F+  A  ++  +     + +  A+E LV   +
Sbjct: 85  DKEFSIEEFMEGAIQAFSHVSRLLSQCQFEALEGLVAKDL 124


>gi|50417024|gb|AAH77162.1| Zgc:123096 protein [Danio rerio]
          Length = 236

 Score = 36.4 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 18/40 (45%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134
             +F  ++F+  A  ++  +     + +  A+E LV   +
Sbjct: 78  DKEFSIEEFMEGAIQAFSHVSRLLSQCQFEALEGLVAKDL 117


>gi|156554910|ref|XP_001604813.1| PREDICTED: similar to juvenile hormone esterase binding protein
           [Nasonia vitripennis]
          Length = 258

 Score = 36.4 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 18/48 (37%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
             DF+  DFL+  + +   +  +       +I+ LVD          +
Sbjct: 100 DNDFNLPDFLDGTKQALSVVSSALAREDYDSIQDLVDKETLAKTRQKI 147


>gi|260815523|ref|XP_002602522.1| hypothetical protein BRAFLDRAFT_93828 [Branchiostoma floridae]
 gi|229287833|gb|EEN58534.1| hypothetical protein BRAFLDRAFT_93828 [Branchiostoma floridae]
          Length = 1324

 Score = 36.4 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/69 (11%), Positives = 25/69 (36%), Gaps = 8/69 (11%)

Query: 14  LLFAFITFFVFLQLRGVLGKKTGNE--KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71
           L+   +  F+F +      ++ G E  +          + ++R +     +     ++  
Sbjct: 639 LVLVAVAIFIFWR------RRRGKESSRAPPPSVPISQLPTRRPKEESEEVDAVDIRNPN 692

Query: 72  DSINELFPI 80
            ++ E+ P 
Sbjct: 693 PTVAEVSPT 701


>gi|5020383|gb|AAD38067.1| juvenile hormone esterase binding protein [Manduca sexta]
          Length = 243

 Score = 36.4 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKS 154
             +F   +F+  ++++ + + D+  +    A+E LV+         ++    S     + 
Sbjct: 86  DQEFSLGEFIEASKHAVQVVSDALQQSDFKALEGLVEKDAIAALKTAV----SKLSVSQR 141

Query: 155 SLVGIDDMKIINA 167
            L+ ID   I  A
Sbjct: 142 QLLAIDKEDIFYA 154


>gi|300705361|ref|YP_003746964.1| hypothetical protein RCFBP_21207 [Ralstonia solanacearum CFBP2957]
 gi|299073025|emb|CBJ44382.1| conserved exported protein of unknown function [Ralstonia
           solanacearum CFBP2957]
          Length = 240

 Score = 36.4 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/150 (10%), Positives = 44/150 (29%), Gaps = 24/150 (16%)

Query: 39  KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELF---PIGTRLNKVMRDIVSVY 95
           +P +   +        +    + + +  K        +     P+   + ++ R   +  
Sbjct: 104 QPGAQAQTPATTAKPAEPGSSVAMQRPPKPVGTPPAEKPAAEKPVADPIAEIARQDAAKT 163

Query: 96  TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155
             F      + A  +         +G +            Q F   ++ R+ N       
Sbjct: 164 GYFLQVGAYDSAEYAERQ------KGNLA----------MQGFEAKVTQREVNGATKYRV 207

Query: 156 ----LVGIDDMKIINASIEENTVYITI-RI 180
                  +D+M  + + ++ + V  T+ R 
Sbjct: 208 RLGPFNSLDEMTAVRSRLQASGVESTVIRF 237


>gi|290968336|ref|ZP_06559877.1| dinuclear metal center protein, YbgI family [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781611|gb|EFD94198.1| dinuclear metal center protein, YbgI family [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 373

 Score = 36.0 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 26  QLRGVLGKK----TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIG 81
           QLR VLGK      G  +  S   SG+  F+ +D         GK +   +   E    G
Sbjct: 149 QLRSVLGKAGAGYIGKYRDCSFSVSGQGRFTPQDGTHPFIGMPGKAETVAEERIETIVPG 208

Query: 82  TRLNKVMRDIVSVYT 96
           +RL+ V+  +V+ + 
Sbjct: 209 SRLSAVIETMVAAHP 223


>gi|171060670|ref|YP_001793019.1| two component Fis family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170778115|gb|ACB36254.1| two component transcriptional regulator, Fis family [Leptothrix
           cholodnii SP-6]
          Length = 240

 Score = 36.0 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 4/86 (4%)

Query: 27  LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK 86
           LR V   + G  KP                   + +   +   ++D    L  +   +  
Sbjct: 111 LRAV---EQGLAKPVPPP-QRSMAPLAATMPAPVPMRNDRDYRSIDLQPMLNSVPQPVIS 166

Query: 87  VMRDIVSVYTDFDPKDFLNEARNSYE 112
           V+        +F     L EAR+++E
Sbjct: 167 VLSSGPQSDQNFSLDRPLREARDAFE 192


>gi|83748527|ref|ZP_00945548.1| FtsN [Ralstonia solanacearum UW551]
 gi|207742124|ref|YP_002258516.1| cell division protein ftsn [Ralstonia solanacearum IPO1609]
 gi|83724831|gb|EAP71988.1| FtsN [Ralstonia solanacearum UW551]
 gi|206593512|emb|CAQ60439.1| cell division protein ftsn [Ralstonia solanacearum IPO1609]
          Length = 240

 Score = 36.0 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/150 (10%), Positives = 43/150 (28%), Gaps = 24/150 (16%)

Query: 39  KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELF---PIGTRLNKVMRDIVSVY 95
           +P +   +        +    + +    K        +     P+   + ++ R   +  
Sbjct: 104 QPGAQAQTPATTAKPAEPGSSVAMQHPPKAVGTPPAEKPAAEKPVADPIAEIARQDAAKT 163

Query: 96  TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155
             F      + A  +         +G +            Q F   ++ R+ N       
Sbjct: 164 GYFLQVGAYDSAEYAERQ------KGNLA----------MQGFEAKVTQREVNGTTKYRV 207

Query: 156 ----LVGIDDMKIINASIEENTVYITI-RI 180
                  +D+M  + + ++ + V  T+ R 
Sbjct: 208 RLGPFNSLDEMTAVRSRLQASGVESTVIRF 237


>gi|330937393|gb|EGH41378.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 179

 Score = 36.0 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/102 (12%), Positives = 28/102 (27%), Gaps = 21/102 (20%)

Query: 10  DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
            F IL+   I  F+  +                     +    K    G     +   + 
Sbjct: 95  LFDILIMGLIA-FLIFR---------------FIARRRQQQQPKMAAAGAPPYQRETSQP 138

Query: 70  NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY 111
             + I       +        +++    F+ + FL+ AR  +
Sbjct: 139 AQNPIFGSSSPASA-----APVINAPAWFNEQRFLDAARGHF 175


>gi|164429129|ref|XP_956785.2| hypothetical protein NCU00466 [Neurospora crassa OR74A]
 gi|157072421|gb|EAA27549.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 330

 Score = 35.6 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 4/72 (5%)

Query: 163 KIINASIEENTVY--ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN 220
            + +A ++       + +R + + +S             PE      + WT  R  P  +
Sbjct: 180 SLQHAKLDGEEARPSVVMRFIVEQLSDIVSSKGE--EGSPEEKKAEAEEWTAERIKPVVD 237

Query: 221 PNWVLISTKLGE 232
                +S    E
Sbjct: 238 ATVKAVSVSDPE 249


>gi|325295715|ref|YP_004282229.1| Prolyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325066163|gb|ADY74170.1| Prolyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 576

 Score = 35.6 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 14/119 (11%)

Query: 92  VSVYTDFDPKDFLNEARNS-YEAIVDSFFEGKVHAIEKLVDSRVYQ-----DFNDSLSTR 145
            +V  ++D    +     + +E IV      K   IE      +Y       F+ ++  R
Sbjct: 451 AAVEQNYDENGIIWPVEIAPFEVIVIPVNVKKEEIIET--AENIYDELQKNGFDVAIDDR 508

Query: 146 KSNE--KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ----FISASYDKDNLLISS 198
            +    K   + L+GI    I+     E  V I +R  G+     ++   +K   L+  
Sbjct: 509 NARPGFKFKDADLIGIPYQIIVGKKAGEGVVEIKVRKTGERFEIAVNKVVEKIGELVRG 567


>gi|299743631|ref|XP_002910687.1| transferase [Coprinopsis cinerea okayama7#130]
 gi|298405745|gb|EFI27193.1| transferase [Coprinopsis cinerea okayama7#130]
          Length = 229

 Score = 35.6 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 3/84 (3%)

Query: 49  YVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPK---DFLN 105
              S R +         +  D      E   +       + D+     +F      +F  
Sbjct: 67  PPSSPRPKEPEPPQPSHQDDDEPSPDGEGDIMDMETFSQLIDLDDDDPEFSKGMVWEFFQ 126

Query: 106 EARNSYEAIVDSFFEGKVHAIEKL 129
           +A  ++E +  +F    +  +  L
Sbjct: 127 QAETTFEELDAAFESRDLSTLSSL 150


>gi|217077931|ref|YP_002335649.1| peptide chain release factor 2 [Thermosipho africanus TCF52B]
 gi|226739131|sp|B7IE81|RF2_THEAB RecName: Full=Peptide chain release factor 2; Short=RF-2
 gi|217037786|gb|ACJ76308.1| peptide chain release factor 2 [Thermosipho africanus TCF52B]
          Length = 369

 Score = 35.6 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 18/122 (14%)

Query: 97  DFDPKDFLNEARNSYEAIVDSFF-EGKVHAIEKLVDSRVYQD-FNDSLSTRKSNEKNVKS 154
           DF+ K  ++EA+  +E I+  F  E K   +E+ ++ ++    F      RK+ E + K+
Sbjct: 3   DFELKQKIDEAKKKFEDIIKVFHPENKRKELEE-LEKQMGDSDFWS--DQRKAREISQKA 59

Query: 155 SLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV-IDIWT 211
             +   IDDMK I A  E+    I +           D+D   + +  E+  ++   + T
Sbjct: 60  QRIRKIIDDMKDIEAKFEDLDAAIELS----------DEDQSFVETIKEMVEEIEKKVKT 109

Query: 212 FV 213
           F 
Sbjct: 110 FE 111


>gi|207727724|ref|YP_002256118.1| cell division protein ftsn [Ralstonia solanacearum MolK2]
 gi|206590965|emb|CAQ56577.1| cell division protein ftsn [Ralstonia solanacearum MolK2]
          Length = 240

 Score = 35.6 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/150 (10%), Positives = 43/150 (28%), Gaps = 24/150 (16%)

Query: 39  KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELF---PIGTRLNKVMRDIVSVY 95
           +P +   +        +    + +    K        +     P+   + ++ R   +  
Sbjct: 104 QPGAQAQTPATTAKPAEPGSSVAMQHPPKAVGTPPAEKPAAEKPVADPIAEIARQDAAKT 163

Query: 96  TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155
             F      + A  +         +G +            Q F   ++ R+ N       
Sbjct: 164 GYFLQVGAYDSAEYAERQ------KGNLA----------MQGFEAKVTQREVNGTTKYRV 207

Query: 156 ----LVGIDDMKIINASIEENTVYITI-RI 180
                  +D+M  + + ++ + V  T+ R 
Sbjct: 208 RLGPFNSLDEMTAVRSRLQASGVESTVIRF 237


>gi|222085403|ref|YP_002543933.1| hypothetical protein Arad_1610 [Agrobacterium radiobacter K84]
 gi|221722851|gb|ACM26007.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 255

 Score = 35.6 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 11/98 (11%), Positives = 25/98 (25%), Gaps = 6/98 (6%)

Query: 40  PFSGFFSGKYVFSKRDERGIITLGKGKK------KDNLDSINELFPIGTRLNKVMRDIVS 93
           P +         ++++    +              D L             +       S
Sbjct: 40  PPAAQPGAASKPAQQNNDKPVEQALEAPSKALPMPDPLVKSQGQSSSNATTSDASTSGKS 99

Query: 94  VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
               +D        R   E IV++   G +  +  L++
Sbjct: 100 AEIIYDISKVPEPVRKLRETIVEAAASGDLERLRPLMN 137


>gi|124006770|ref|ZP_01691601.1| hypothetical protein M23134_08330 [Microscilla marina ATCC 23134]
 gi|123987678|gb|EAY27378.1| hypothetical protein M23134_08330 [Microscilla marina ATCC 23134]
          Length = 155

 Score = 35.2 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 12/85 (14%)

Query: 112 EAIVDSFFEGKVHAIEKLV--DSRVY------QDFNDSLSTRKSNEKNVK---SSLVGID 160
           E  + +F  G    ++  +     VY        F D +  ++   +  K   S    I 
Sbjct: 11  EGFIKAFEAGDTEKMKSYLADAEAVYRMPYASGMFPDVIEGKEGFHEFTKDWPSIFEKI- 69

Query: 161 DMKIINASIEENTVYITIRIVGQFI 185
           D++I+   ++EN   + +R   + +
Sbjct: 70  DLEIVEIILDENAGKVVVRTKVELV 94


>gi|302419951|ref|XP_003007806.1| predicted protein [Verticillium albo-atrum VaMs.102]
 gi|261353457|gb|EEY15885.1| predicted protein [Verticillium albo-atrum VaMs.102]
          Length = 310

 Score = 35.2 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
           +   G   A+  +    +Y+    +L  R S  +     +V      +    +
Sbjct: 154 ALAAGDREALRAICTPALYETLGATLDKR-SRHERTTWDVVATHRTWLAAHRV 205


>gi|194756324|ref|XP_001960429.1| GF13356 [Drosophila ananassae]
 gi|190621727|gb|EDV37251.1| GF13356 [Drosophila ananassae]
          Length = 267

 Score = 35.2 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 43/112 (38%), Gaps = 11/112 (9%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS-----TRKS-- 147
            ++F  KDF+  A+ + + +      G + +++ LV      +    +       R+   
Sbjct: 105 DSEFQLKDFIFGAKQALQVVSSRLMGGDLDSLDNLVAPEAISELRPVIQKLSMTQRRQLE 164

Query: 148 -NEKNVKSSLVGIDDMKIINA--SIEENTVYITIRI-VGQFISASYDKDNLL 195
             E ++  S      +    A   +++  V IT+   V + +S   ++   +
Sbjct: 165 IKESDIYLSFPYQVGIMFDEANDKLQKRFVEITMVFHVMRGLSEMRERGEEI 216


>gi|218262532|ref|ZP_03476953.1| hypothetical protein PRABACTJOHN_02631 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223318|gb|EEC95968.1| hypothetical protein PRABACTJOHN_02631 [Parabacteroides johnsonii
           DSM 18315]
          Length = 986

 Score = 35.2 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 29/174 (16%)

Query: 50  VFSKRDERGIITLGKGKKKDNLDSINELFPIGTRL-NKVMRDIVSVYTDFDPKDFLNEAR 108
           V   RD+             NLD   E     + L  +++  I   +  F     L  A+
Sbjct: 115 VARARDKENGRLQNPRLALYNLDKEEEEQGTRSDLQARIIELIGLTFEQFTRSVLL--AQ 172

Query: 109 NSYEAIVDSFFEGKVHAI-EKLVDSRVYQDFNDSLSTRKSNEKN----VKSSLVGID--- 160
           N +   + +  +G+  ++ EKL  + +Y   +  +  R +  K+    ++S + GI+   
Sbjct: 173 NDFSTFLKA-EQGEKASLLEKLTGTELYSAISRQIFERNARAKDAFDLIQSRIQGIELLT 231

Query: 161 -----------------DMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197
                              +I  A  E+  +   +R V Q IS    +      
Sbjct: 232 DEEENDLRTRLAQAEKESQRIEKAKAEQQALQEAVRSVEQQISVRRRQQKEAAD 285


>gi|170065218|ref|XP_001867849.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167882301|gb|EDS45684.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 254

 Score = 35.2 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 23/48 (47%)

Query: 95  YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
             +F   DF+  A+ + + +  S   G++  ++ LV+ +   D   ++
Sbjct: 91  DREFTLPDFVQGAKQALQVVSASLAGGELKNLDGLVERQTLNDLKTAV 138


>gi|167752289|ref|ZP_02424416.1| hypothetical protein ALIPUT_00533 [Alistipes putredinis DSM 17216]
 gi|167660530|gb|EDS04660.1| hypothetical protein ALIPUT_00533 [Alistipes putredinis DSM 17216]
          Length = 748

 Score = 35.2 bits (80), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 74  INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA---RNSYEAIVDSFFEGKVHAI 126
           + E  P+G    KV  +I  V+ +        ++     ++  IV++F  G    +
Sbjct: 500 VTEPVPMGFGTEKVEEEIARVFPEARVARLDRDSVTSERAFRQIVEAFARGDDDIL 555


>gi|300692743|ref|YP_003753738.1| hypothetical protein RPSI07_3128 [Ralstonia solanacearum PSI07]
 gi|299079803|emb|CBJ52480.1| conserved exported protein of unknown function [Ralstonia
           solanacearum PSI07]
          Length = 236

 Score = 34.9 bits (79), Expect = 8.8,   Method: Composition-based stats.
 Identities = 17/150 (11%), Positives = 44/150 (29%), Gaps = 27/150 (18%)

Query: 36  GNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVY 95
           G ++P     + K            ++   +    +       P+   + ++ R   +  
Sbjct: 106 GTQQPPQAPATPKPAEPAS------SVAVQRPPKPVAPPPAEKPVADPIAEIARQDAAKT 159

Query: 96  TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155
             F      + A  +         +G +            Q F   ++ R+ N       
Sbjct: 160 GYFLQVGAYDSAEYAERQ------KGNLA----------MQGFEAKVTQREVNGTTKYRV 203

Query: 156 ----LVGIDDMKIINASIEENTVYITI-RI 180
                  +D+M  + + ++ + V  T+ R 
Sbjct: 204 RLGPFNSLDEMTAVRSRLQASGVESTVIRF 233


>gi|170741273|ref|YP_001769928.1| hypothetical protein M446_3084 [Methylobacterium sp. 4-46]
 gi|168195547|gb|ACA17494.1| conserved hypothetical protein [Methylobacterium sp. 4-46]
          Length = 233

 Score = 34.9 bits (79), Expect = 8.8,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 11/122 (9%)

Query: 34  KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93
           + G   P  G  + +      +   + +L     + +L             N  +R + S
Sbjct: 26  RAGETAPPPGPDAAEPELPPEELARLPSLDALTPQTDLAQFLRAGVPRALRNAALRRMWS 85

Query: 94  VYTDFDPKDFLNEARN-SYEAIVDSFFEGKVHAIEKLV-DSRVYQDFNDSLS---TRKSN 148
           +      +DF++EAR  +++  V     G V     L+    V       ++    R + 
Sbjct: 86  LDPA--IRDFVSEAREYAWDWNVP----GDVPGAGPLLPTDDVAAMVERVIAGEPARAAP 139

Query: 149 EK 150
             
Sbjct: 140 GH 141


>gi|38257056|ref|NP_940710.1| methyl-accepting chemotaxis protein [Pseudomonas syringae pv.
           syringae]
 gi|37723833|gb|AAR02159.1| methyl-accepting chemotaxis protein [Pseudomonas syringae pv.
           syringae]
          Length = 540

 Score = 34.9 bits (79), Expect = 8.9,   Method: Composition-based stats.
 Identities = 11/113 (9%), Positives = 40/113 (35%), Gaps = 19/113 (16%)

Query: 111 YEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE 170
           +  ++    +G + ++  L+++ +  + N ++S      + ++   V ++    + A  +
Sbjct: 128 FSKLLTLSEQGNIESLRSLLNNELNDNHNAAISQLNLLAEKIEEETVNVNSS--VEAEYK 185

Query: 171 -----------------ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
                                 I +R + + +  + D  + +   D     +V
Sbjct: 186 NILNLTIFFVIAVFILGGLLALIIVRSIQKPLKITVDIADRIARGDLREPIEV 238


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.308    0.152    0.452 

Lambda     K      H
   0.267   0.0466    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,768,451,765
Number of Sequences: 14124377
Number of extensions: 212860959
Number of successful extensions: 688507
Number of sequences better than 10.0: 1284
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 593
Number of HSP's that attempted gapping in prelim test: 685902
Number of HSP's gapped (non-prelim): 2001
length of query: 232
length of database: 4,842,793,630
effective HSP length: 134
effective length of query: 98
effective length of database: 2,950,127,112
effective search space: 289112456976
effective search space used: 289112456976
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.9 bits)
S2: 79 (34.9 bits)