BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780815|ref|YP_003065228.1| hypothetical protein CLIBASIA_03530 [Candidatus Liberibacter asiaticus str. psy62] (232 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780815|ref|YP_003065228.1| hypothetical protein CLIBASIA_03530 [Candidatus Liberibacter asiaticus str. psy62] gi|254040492|gb|ACT57288.1| hypothetical protein CLIBASIA_03530 [Candidatus Liberibacter asiaticus str. psy62] Length = 232 Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust. Identities = 232/232 (100%), Positives = 232/232 (100%) Query: 1 MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60 MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII Sbjct: 1 MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE Sbjct: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI Sbjct: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE Sbjct: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 >gi|315122039|ref|YP_004062528.1| hypothetical protein CKC_01445 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495441|gb|ADR52040.1| hypothetical protein CKC_01445 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 231 Score = 305 bits (781), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 157/231 (67%), Positives = 185/231 (80%), Gaps = 4/231 (1%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFS---GKYVFS-KRDERGIIT 61 M GDFLILL FI FV L+LR LGK+TG+EKP SGF K +FS K D +++ Sbjct: 1 MYLGDFLILLCFFIAVFVILKLRSALGKRTGHEKPLSGFSPEQRKKSIFSPKGDGWNVVS 60 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 L KGKK+D LDSIN LFP+GTRLNKV RDIVS+Y+ FDPKDFLN R+SY IVDSFFEG Sbjct: 61 LNKGKKEDVLDSINGLFPVGTRLNKVFRDIVSIYSGFDPKDFLNGVRDSYGVIVDSFFEG 120 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 + IEKL+DS+VYQDF DSL +KS+EK +KSSLVG+DD+KI+NAS+E N +YIT RIV Sbjct: 121 NILKIEKLIDSKVYQDFADSLLIQKSSEKVIKSSLVGLDDLKIVNASVEGNNIYITTRIV 180 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 GQFISASYDK+N LI+ DPEIFGKV+D+WTFVRNI SNPNW+LISTK GE Sbjct: 181 GQFISASYDKNNALIAGDPEIFGKVVDVWTFVRNISSSNPNWILISTKPGE 231 >gi|222147023|ref|YP_002547980.1| Membrane associated transporter protein [Agrobacterium vitis S4] gi|221734013|gb|ACM34976.1| Membrane associated transporter protein [Agrobacterium vitis S4] Length = 232 Score = 167 bits (424), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 88/229 (38%), Positives = 133/229 (58%), Gaps = 5/229 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGK--YVFSKRDERGIITLG 63 M S DF+ L F +F QLR VLG++TGNEKP F+G+ ++ ++TL Sbjct: 1 MGSNDFVTLFFLVAAVLIFWQLRSVLGRRTGNEKPPKDPFAGRPDAASPAAEDARVVTLP 60 Query: 64 KGKKKDNLD---SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 + + D + +I+ P GT LN+ +R +V V F PK+FLN AR +YE IV +F Sbjct: 61 RRDEADGEERQTAIDAYAPAGTPLNQQLRQVVEVDPSFVPKEFLNGARMAYEMIVTAFAA 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 G +++ L+ VY F+ +++ R+ + +KS+ VGID +I +A + + V IT+R+ Sbjct: 121 GDRKSLKDLLSREVYDGFDAAITEREQRGEVMKSTFVGIDKAEITSAEVRDQEVQITVRL 180 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 V Q ISA+YD +I D E G V DIWTF R+ +PNW LI+T+ Sbjct: 181 VSQLISATYDSQGAVIEGDAESVGDVNDIWTFARDTRSRDPNWKLIATE 229 >gi|325291461|ref|YP_004277325.1| hypothetical protein AGROH133_02812 [Agrobacterium sp. H13-3] gi|325059314|gb|ADY63005.1| hypothetical protein AGROH133_02812 [Agrobacterium sp. H13-3] Length = 232 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/229 (38%), Positives = 134/229 (58%), Gaps = 5/229 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSK--RDERGIITLG 63 M DF+ L F +FLQLR VLG++TGNEKP ++ + V D+ ++TL Sbjct: 1 MGFSDFITLFFLVAAVLIFLQLRSVLGRRTGNEKPPFDPYTPRDVAKGPVTDDNKVVTLP 60 Query: 64 KGKKKDNLDSINE---LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 K + ++ + E L P+ T LN +R++++ F PK+FLN AR +YE IV F + Sbjct: 61 KRSEAEDENRFAEADALAPVDTALNTSLRELMTKDPTFRPKEFLNGARMAYEMIVMGFAD 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 G ++ L+ V+ F ++S R+S + VKS+ VGI+ I A I ++ IT+RI Sbjct: 121 GDRKTLKNLLSKEVFDGFEAAISERESRGEVVKSTFVGIEKADITQAGIRDSEEQITLRI 180 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 V Q ISA+YDKD L+ DP+ +V DIWTF R++ +PNW LI+T+ Sbjct: 181 VSQLISATYDKDGKLVDGDPDAVAEVDDIWTFSRDVRSRDPNWKLIATE 229 >gi|222084209|ref|YP_002542735.1| translocase transmembrane protein [Agrobacterium radiobacter K84] gi|221721657|gb|ACM24813.1| translocase transmembrane protein [Agrobacterium radiobacter K84] Length = 233 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 133/230 (57%), Gaps = 6/230 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFS---KRDERGIITL 62 M + DF+ + F +F QLR VLG++TGNEKP + + D ++TL Sbjct: 1 MGANDFVTIFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYGSPDQATGPNAPDAGKVVTL 60 Query: 63 GK---GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + +D +I+ P GT LN +R++ F PK+F+N AR +YE IV +F Sbjct: 61 PRRDATEDEDRFAAIDAFTPAGTPLNDSLRELNKADPSFSPKEFVNGARMAYEMIVMAFA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G +A++ L+ VY+ F+ +++ R++ + VKS+ VGID I++A +++ +T+R Sbjct: 121 DGDRNALKGLLSREVYEGFDAAITDRETKGEKVKSTFVGIDKADIVSAEMKDTEATVTMR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 IV Q ISA+YDK LI D E ++ D+WTF R+ +PNW L++T+ Sbjct: 181 IVSQMISATYDKAGTLIDGDAETVAEISDVWTFARDSRSRDPNWKLVATE 230 >gi|218661852|ref|ZP_03517782.1| import inner membrane translocase subunit Tim44 [Rhizobium etli IE4771] Length = 234 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 84/230 (36%), Positives = 131/230 (56%), Gaps = 6/230 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG--IITLG 63 M S DF+ L F +F QLR VLG++TGNEKP ++ + ++TL Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60 Query: 64 K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + G+ +D +I+ + GT LN+ +R + F+PK+FLN AR +YE IV ++ Sbjct: 61 RRDATGEDEDRFAAIDAVAAPGTPLNESLRALNKADPSFNPKEFLNGARMAYEMIVMAYA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY F+ ++ R+S + VKS+ VGID +I +A + + IT+R Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGERESRGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 IV Q ISA+YDK + LI D E +V D+WTF R+ +PNW L++T+ Sbjct: 181 IVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATE 230 >gi|159184122|ref|NP_353048.2| hypothetical protein Atu0008 [Agrobacterium tumefaciens str. C58] gi|159139459|gb|AAK85833.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 217 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 85/214 (39%), Positives = 127/214 (59%), Gaps = 5/214 (2%) Query: 21 FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSK--RDERGIITL---GKGKKKDNLDSIN 75 +F QLR VLG++TGNEKP +S + V D+ ++TL G+ ++ + + Sbjct: 1 MLIFFQLRSVLGRRTGNEKPPFDPYSPRDVAKGPVADDNKVVTLPKRGEAEEDNRFAEAD 60 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 L P T LN +RD+++ F PK+FLN AR +YE IV F +G ++ L+ V+ Sbjct: 61 ALAPADTPLNASLRDVMTKDPSFRPKEFLNGARMAYEMIVMGFADGDRKTLKNLLSKEVF 120 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 F ++S R+S + VKS+ VGI+ I A + ++ V +T+RIV Q ISA+YDKD L Sbjct: 121 DGFEAAISERESRGEVVKSTFVGIEKADITQAGVRDSEVQVTLRIVSQLISATYDKDGKL 180 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + DPE +V DIWTF R+I +PNW LI+T+ Sbjct: 181 VDGDPEAVAEVDDIWTFSRDIRSRDPNWKLIATE 214 >gi|218673282|ref|ZP_03522951.1| import inner membrane translocase subunit Tim44 [Rhizobium etli GR56] Length = 234 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 130/230 (56%), Gaps = 6/230 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG--IITLG 63 M S DF+ L F +F QLR VLG++TGNEKP ++ + ++TL Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60 Query: 64 K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + +D +I+ + GT LN+ +R + F+PK+FLN AR +YE IV ++ Sbjct: 61 RRDATAEDEDRFAAIDAVAAPGTPLNESLRALNKADPSFNPKEFLNGARMAYEMIVMAYA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY F+ ++ R++ + VKS+ VGID +I +A + + IT+R Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 IV Q ISA+YDK + LI D E +V D+WTF R+ +PNW L++T+ Sbjct: 181 IVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATE 230 >gi|86355677|ref|YP_467569.1| putative translocase transmembrane protein [Rhizobium etli CFN 42] gi|86279779|gb|ABC88842.1| putative translocase transmembrane protein [Rhizobium etli CFN 42] Length = 234 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 126/237 (53%), Gaps = 20/237 (8%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFS------------GKYV-FS 52 M S DF+ L F +F QLR VLG++TGNEKP +S GK V Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYSPREAAPPEAAEAGKVVTLP 60 Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 +RD +D +I+ GT LN+ +R + F PK+FLN AR +YE Sbjct: 61 RRD-------ATADDEDRFSAIDAFAAPGTPLNESLRALNKADPSFSPKEFLNGARMAYE 113 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 +V ++ +G ++ L+ VY F ++ R++ + VKS+ VGID +I +A + + Sbjct: 114 MVVMAYADGDRKTLKSLLSREVYDGFEAAIGEREARGEKVKSTFVGIDKAEITHAETKGS 173 Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 IT+RIV Q ISA+YDK + LI D E +V D+WTF R+ +PNW L++T+ Sbjct: 174 EAQITVRIVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATE 230 >gi|116249774|ref|YP_765612.1| hypothetical protein RL0008 [Rhizobium leguminosarum bv. viciae 3841] gi|115254422|emb|CAK05496.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 234 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 6/230 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG--IITLG 63 M S DF+ L F +F QLR VLG++TGNEKP ++ + ++TL Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60 Query: 64 K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + +D +I+ GT LN+ +R + F PK+FLN AR +YE IV ++ Sbjct: 61 RRDATTEDEDRFAAIDAFAAPGTPLNESLRALNKADPAFSPKEFLNGARMAYEMIVMAYA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY F+ ++ R++ + VKS+ VGID +I +A + + IT+R Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I Q ISA+YDK ++LI D E +V D+WTF R+ +PNW L++T+ Sbjct: 181 IASQLISATYDKADVLIEGDAENVAEVNDVWTFARDTRSRDPNWKLVATE 230 >gi|209551513|ref|YP_002283430.1| import inner membrane translocase subunit Tim44 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537269|gb|ACI57204.1| import inner membrane translocase subunit Tim44 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 234 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 129/230 (56%), Gaps = 6/230 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG--IITLG 63 M S DF+ L F +F QLR VLG++TGNEKP ++ + ++TL Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60 Query: 64 K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + +D +I+ GT LN+ +R + F PK+FLN AR +YE IV ++ Sbjct: 61 RRDATTEDEDRFAAIDAFAAPGTPLNESLRALNKADPAFSPKEFLNGARMAYEMIVMAYA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY F+ ++ R++ + VKS+ VGID +I +A + + IT+R Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGERETRGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I+ Q ISA+YDK ++LI D E +V D+WTF R+ +PNW L++T+ Sbjct: 181 IISQLISATYDKADVLIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATE 230 >gi|241206951|ref|YP_002978047.1| import inner membrane translocase subunit Tim44 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860841|gb|ACS58508.1| import inner membrane translocase subunit Tim44 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 234 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 6/230 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG--IITLG 63 M S DF+ L F +F QLR VLG++TGNEKP ++ + ++TL Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60 Query: 64 K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + +D +I+ GT LN+ +R + F PK+FLN AR +YE IV ++ Sbjct: 61 RRDATTEDEDRFAAIDAFAAPGTPLNESLRALNKADPAFTPKEFLNGARMAYEMIVMAYA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY F+ ++ R++ + VKS+ VGID +I +A + + IT+R Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I Q ISA+YDK ++LI D E +V D+WTF R+ +PNW L++T+ Sbjct: 181 IASQLISATYDKADVLIEGDAENVAEVNDVWTFARDTRSRDPNWKLVATE 230 >gi|150398408|ref|YP_001328875.1| import inner membrane translocase subunit Tim44 [Sinorhizobium medicae WSM419] gi|150029923|gb|ABR62040.1| import inner membrane translocase subunit Tim44 [Sinorhizobium medicae WSM419] Length = 234 Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 81/231 (35%), Positives = 131/231 (56%), Gaps = 7/231 (3%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFS---KRDERGIITL 62 M S DF+ F +FLQLR VLG++TG+E+P +S + + +D ++ L Sbjct: 1 MGSFDFITFFFLIAAVVIFLQLRSVLGRRTGSERPPFDPYSSRDIAQGPEAKDNGKVVQL 60 Query: 63 ----GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 G + + I + GT LN +R + +F+P +FLN A+ +YE IV +F Sbjct: 61 PRRDGAAEDESRYAEIETVAKAGTPLNAQLRAVTDADPNFNPVEFLNGAKMAYEMIVMAF 120 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 +G ++ L+ VY+ F +++ R++ + VKS+ VGID I++A I+++ IT+ Sbjct: 121 ADGDRKTLKGLLSREVYEGFEAAIAERENKGEVVKSTFVGIDKADIVHAEIKDSEENITV 180 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 RI+ Q ISA+YDK L+ D E +V D+WTF R+I +PNW LI+T+ Sbjct: 181 RIISQLISATYDKQGKLVDGDAESVAEVNDLWTFSRDIRSRDPNWKLIATE 231 >gi|328545867|ref|YP_004305976.1| Import inner membrane translocase subunit Tim44 [polymorphum gilvum SL003B-26A1] gi|326415607|gb|ADZ72670.1| Import inner membrane translocase subunit Tim44 [Polymorphum gilvum SL003B-26A1] Length = 242 Score = 148 bits (373), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 131/242 (54%), Gaps = 24/242 (9%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERG---------- 58 D ++F + FVF +LR VLGK+TGNE+P F Y RD R Sbjct: 6 DIYNIIFLALAIFVFFRLRSVLGKRTGNERPPFD-----PYSKPARDNRAPGGAEAGGVD 60 Query: 59 -IITL-------GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNS 110 +I L G G + ++++ P G+ LN +R I+SV F+P+ FL AR + Sbjct: 61 NVIPLPGKPVEAGAGDTERGAVVLDKVAPSGSALNAALRQILSVDRSFEPEQFLQGARAA 120 Query: 111 YEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE 170 YE IV +F EG ++ L+ VY F ++S R++ + ++S+ VGID I+ A+++ Sbjct: 121 YEMIVTAFAEGDRKTLKNLLSKEVYDGFVTAISEREARGETIESTFVGIDKADIVEAALK 180 Query: 171 ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + +T+R+ + ISA+ DKD ++ DP +V+DIWTF R+ +PNW L++T+ Sbjct: 181 GSVAQVTVRLQSELISATRDKDGHVVDGDPSRVTEVVDIWTFARDTTSRDPNWKLVATES 240 Query: 231 GE 232 E Sbjct: 241 AE 242 >gi|15963761|ref|NP_384114.1| putative translocase transmembrane protein [Sinorhizobium meliloti 1021] gi|307302564|ref|ZP_07582321.1| import inner membrane translocase subunit Tim44 [Sinorhizobium meliloti BL225C] gi|307316105|ref|ZP_07595549.1| import inner membrane translocase subunit Tim44 [Sinorhizobium meliloti AK83] gi|15072936|emb|CAC41395.1| Import inner membrane translocase subunit TIM44 [Sinorhizobium meliloti 1021] gi|306897945|gb|EFN28687.1| import inner membrane translocase subunit Tim44 [Sinorhizobium meliloti AK83] gi|306903234|gb|EFN33824.1| import inner membrane translocase subunit Tim44 [Sinorhizobium meliloti BL225C] Length = 233 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 131/230 (56%), Gaps = 6/230 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFS---KRDERGIITL 62 M S DF+ F +FLQLR VLG++TG+E+P +S + + +D ++ L Sbjct: 1 MGSFDFITFFFLIAAVVIFLQLRSVLGRRTGSERPPFDPYSPRDIAQGPEAKDNGKVVQL 60 Query: 63 GK---GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + + +I + GT LN +R + +F+P +FLN A+ +YE IV +F Sbjct: 61 PRRETAEDESRYAAIEIVAKAGTPLNAQLRAMTDADPNFNPAEFLNGAKMAYEMIVMAFA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY+ F +++ R++ + VKS+ VGID I++A I++ IT+R Sbjct: 121 DGDRKTLKGLLSREVYEGFEAAIAEREAKGEVVKSTFVGIDKADIVHAEIKDAEENITVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I+ Q ISA+YDK L+ D + +V D+WTF R+I +PNW LI+T+ Sbjct: 181 IISQLISATYDKQGKLVDGDADSVAEVNDLWTFARDIRSRDPNWKLIATE 230 >gi|239833115|ref|ZP_04681444.1| import inner membrane translocase subunit Tim44 [Ochrobactrum intermedium LMG 3301] gi|239825382|gb|EEQ96950.1| import inner membrane translocase subunit Tim44 [Ochrobactrum intermedium LMG 3301] Length = 253 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 73/212 (34%), Positives = 125/212 (58%), Gaps = 4/212 (1%) Query: 22 FVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINEL 77 +FLQLR VLG++TGNEKP ++ S + + +++L + + + +I++ Sbjct: 39 IIFLQLRNVLGRRTGNEKPPFDPYTSARSADAAPAGSETDNVVSLPRRTGEKDFTAIDKA 98 Query: 78 FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD 137 P GT +N +R I + FDP F++ + +YE IV SF +G ++ L+ VY+ Sbjct: 99 APAGTPVNDGLRAIYAADPSFDPASFVDGVKIAYEMIVMSFADGDRKVLKNLLSKDVYEG 158 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197 F ++ R++ ++V+SS VGID +I A ++ + ++T+ IV Q IS++YDKD LI Sbjct: 159 FVSAIDEREARGESVRSSFVGIDKAEITGAEMKGSEAHVTVNIVSQMISSTYDKDGKLID 218 Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 DPE ++ D+WTF R+ +PNW L++T+ Sbjct: 219 GDPENVLEIKDLWTFARDTRSRDPNWKLVATE 250 >gi|227823867|ref|YP_002827840.1| putative import inner membrane translocase, subunit Tim44 [Sinorhizobium fredii NGR234] gi|227342869|gb|ACP27087.1| putative import inner membrane translocase, subunit Tim44 [Sinorhizobium fredii NGR234] Length = 233 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 128/230 (55%), Gaps = 6/230 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF--SKRDERGIITLG 63 M S DF+ F +FLQLR VLG++TGNE+P +S + RD ++ L Sbjct: 1 MGSFDFITFFFLIAAVVIFLQLRSVLGRRTGNERPPFDPYSPREAQGPEARDNGKVVQLP 60 Query: 64 K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + + +I+ GT LN +R + F P +FLN A+ +YE IV +F Sbjct: 61 RRESTAEDESRYAAIDGFSKPGTPLNGQLRALSDADPSFQPAEFLNGAKMAYEMIVMAFA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY+ F +++ R++ + VKS+ VGI+ I++A +++ +T+R Sbjct: 121 DGDRKTLKGLLSREVYEGFETAIAERETRGEVVKSTFVGIEKADIVHAELKDAEENVTVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I+ Q ISA+YDK LI D + +V D+WTF R+I +PNW LI+T+ Sbjct: 181 IISQLISATYDKQGKLIDGDADSVAEVNDLWTFARDIRSRDPNWKLIATE 230 >gi|307943366|ref|ZP_07658710.1| import inner membrane translocase subunit Tim44 [Roseibium sp. TrichSKD4] gi|307772996|gb|EFO32213.1| import inner membrane translocase subunit Tim44 [Roseibium sp. TrichSKD4] Length = 244 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 136/246 (55%), Gaps = 30/246 (12%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERGIITLGKGKKK 68 D ++F + F+ +L+ VLGK+TGNE+P F +SK+D+ G + G + Sbjct: 6 DVYNIIFLGLAVFILFRLKSVLGKRTGNERPPFD-------PYSKQDDAGQSSQGGKSQS 58 Query: 69 DNLDS----------------------INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNE 106 DN+ I++L P GT LN+ ++ I+SV F+P++F+ Sbjct: 59 DNVIPMPGQESYQETGIREPEENGEVVIDKLAPQGTALNEALKQILSVDRTFEPREFIEG 118 Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN 166 A +YE IV +F EG +++L+ V+ F ++ R+ ++ ++S+ VGID +I+ Sbjct: 119 ASAAYEMIVTAFAEGDRKTLKQLLSKDVFDGFIMAIDEREKRDEVIESTFVGIDKAEIVE 178 Query: 167 ASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 A++++ T +T+++ Q ISA+ DKD ++ DP +VIDIWTF R+ +PNW L+ Sbjct: 179 AALKDGTAQVTVKVQSQLISATCDKDGEVVDGDPNKVSEVIDIWTFARDTGSRDPNWKLV 238 Query: 227 STKLGE 232 +T+ E Sbjct: 239 ATESAE 244 >gi|190889648|ref|YP_001976190.1| translocase transmembrane protein [Rhizobium etli CIAT 652] gi|190694927|gb|ACE89012.1| putative translocase transmembrane protein [Rhizobium etli CIAT 652] Length = 233 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 122/232 (52%), Gaps = 6/232 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG--IITLG 63 M S DF+ L F +F QLR VLG++TGNEKP + + ++TL Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYQPRDAAPAEAADAGKVVTLP 60 Query: 64 K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + +D +I+ + GT LN+ +R + F PK+FLN AR +YE IV ++ Sbjct: 61 RRDATAEDEDRFSAIDAVAAPGTPLNESLRALNKADASFTPKEFLNGARMAYEMIVMAYA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY F+ ++ R++ + VKS+ VGID +I +A + IT+R Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGTEAQITVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 IV Q ISA+YDK ++LI D E +V D+WTF P + ++G Sbjct: 181 IVSQLISATYDKADVLIEGDAENVAEVNDLWTFAPRYPLARSELETCGDRIG 232 >gi|153008182|ref|YP_001369397.1| import inner membrane translocase subunit Tim44 [Ochrobactrum anthropi ATCC 49188] gi|151560070|gb|ABS13568.1| import inner membrane translocase subunit Tim44 [Ochrobactrum anthropi ATCC 49188] Length = 231 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 125/211 (59%), Gaps = 4/211 (1%) Query: 23 VFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELF 78 +FLQLR VLG++TG+EKP ++ S + + +++L + + + +I++ Sbjct: 18 IFLQLRNVLGRRTGSEKPPFDPYTSARSADAAPASGETDNVVSLPRRPGEKDFTAIDKAA 77 Query: 79 PIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138 P+GT +N MR I + FDP F+ + +YE IV SF +G ++ L+ V++ F Sbjct: 78 PVGTPVNDGMRAIYAADPSFDPAGFVEGVKIAYEMIVMSFADGDRKVLKNLLSKDVFEGF 137 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 ++ R++ ++V+SS VGID +I A ++ + ++T+ IV Q IS+++DKD LI Sbjct: 138 VSAIDDRETRGESVRSSFVGIDKAEIAGAEMKGSEAHVTVNIVSQMISSTFDKDGKLIDG 197 Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 DPE ++ D+WTF R+ +PNW L++T+ Sbjct: 198 DPENVLEIKDLWTFARDTRSRDPNWKLVATE 228 >gi|118591473|ref|ZP_01548870.1| Calcium-binding EF-hand [Stappia aggregata IAM 12614] gi|118435801|gb|EAV42445.1| Calcium-binding EF-hand [Stappia aggregata IAM 12614] Length = 230 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 129/228 (56%), Gaps = 14/228 (6%) Query: 19 ITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKR----DERGIITLGKGKKKDNL--- 71 + F+ +LR VLGK+TGNE+P +S R D+ +I L +D Sbjct: 3 LAVFILFRLRSVLGKRTGNERPPFDPYSKPDQQRDRKNGNDQDNVIPLPNQPMQDAETVE 62 Query: 72 DS-------INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 D+ I+++ P G+ LN ++ I+SV F+P+ FL AR +YE IV +F +G Sbjct: 63 DTGRGGDVVIDKVAPAGSALNSALKQILSVDRSFEPEPFLEGARAAYEMIVMAFADGDKK 122 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 A++ L+ VY+ F ++ R+ + ++S+ VGID +I+ A+++ +T +T++I Q Sbjct: 123 ALKNLLSREVYEGFVAAIDEREKRGETIESTFVGIDKAEIVEAALKNSTAQVTVKIHSQL 182 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ISA+ DK+ ++ DP +VIDIWTF R+ +PNW L++T+ E Sbjct: 183 ISATRDKNGEVVDGDPAKVSEVIDIWTFARDTTSRDPNWKLVATESAE 230 >gi|319407969|emb|CBI81623.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 230 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 128/227 (56%), Gaps = 4/227 (1%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKG 65 D ++++ I VF+QLR VLGK+TG E+P +SG + D Sbjct: 4 DVVLVIALVIMVVVFMQLRNVLGKRTGFERPPFDPYSGCSKKQIETETVDHSLSFPHQAN 63 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +K + I+ + P G+ LN +R I ++F P+ F+N + +YE I+ +F +G Sbjct: 64 ARKKDFSEIDAIAPEGSALNDGLRAICQADSNFSPQFFVNGVQIAYEMIMTAFAQGDRDQ 123 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 ++KL+ V++ F ++ R+ E+ V+ + VGI+ ++ + A +++N ++T+RIV + I Sbjct: 124 LKKLLSQDVFESFCAAIERREKREEKVEFTFVGINKVEFVAAEMQKNEEFLTVRIVSEII 183 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 S +Y+K N I DPE ++ D+WTFVRN +PNW L +T+ G+ Sbjct: 184 SVTYNKQNECIDGDPEAIVEIKDVWTFVRNSLSQDPNWKLFATEDGD 230 >gi|110635813|ref|YP_676021.1| import inner membrane translocase, subunit Tim44 [Mesorhizobium sp. BNC1] gi|110286797|gb|ABG64856.1| import inner membrane translocase, subunit Tim44 [Chelativorans sp. BNC1] Length = 235 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 131/231 (56%), Gaps = 8/231 (3%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDER----GIITLGK 64 DF + F +F QLR VLG++TG+E+P F + +G+ ++ ++ ++ L + Sbjct: 5 DFGTIFFLVAAVVIFFQLRNVLGRRTGSERPPFDPYTAGRSRPAEAEKSVKNDTVVALPR 64 Query: 65 GK---KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 K ++ + I+++ GT LN+ +R I FDP F++ A+ +YE IV +F +G Sbjct: 65 RKGLVDEERYNIIDKVAQPGTELNRGLRAIKDADPSFDPNTFVDGAKLAYEMIVMAFADG 124 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 ++ L+ VY+ F ++ R+ + ++SS VGID II+A ++ + ++T+RIV Sbjct: 125 DRRTLKNLLSREVYEGFVSAIDERERRSEKIESSFVGIDKATIISAEMKGSEAHVTLRIV 184 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + ISA+ D +I DPE +V DIWTF R+ +PNW L++T+ E Sbjct: 185 SELISATRDSGGSIIDGDPETVAEVKDIWTFARDTRSRDPNWKLVATEAEE 235 >gi|27375753|ref|NP_767282.1| hypothetical protein blr0642 [Bradyrhizobium japonicum USDA 110] gi|27348891|dbj|BAC45907.1| blr0642 [Bradyrhizobium japonicum USDA 110] Length = 235 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 11/230 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL-GKGKKK 68 D ++F + F+FL+LR VLG++TGNE+P + + ++ ++T+ GK + Sbjct: 2 DIYTIIFLALAVFIFLRLRSVLGQRTGNERPPFDHTAARNALGGAQDKNVVTMPGKVIDQ 61 Query: 69 DNLDSINELFPI----------GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 L E P GT L + + IV + FDP+ F++ AR +YE IV +F Sbjct: 62 APLAPTVEPTPPSDRWKGLTEPGTALAQGLDAIVDKDSTFDPRHFISGARGAYEMIVLAF 121 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 G A+ L+ S VY+ F+ ++ R+ NE+ ++ V ID +++ A + + T +TI Sbjct: 122 ANGDRRALRDLLSSEVYESFDAAIKEREKNEQKTETRFVSIDKAELVGAELRDRTAQLTI 181 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 R V Q ISA+ DK ++ + + DIWTF R+I +PNW L+ T Sbjct: 182 RFVSQMISATRDKAGNIVDGSADTVADITDIWTFARDITSRDPNWKLVGT 231 >gi|49474924|ref|YP_032965.1| hypothetical protein BH01040 [Bartonella henselae str. Houston-1] gi|49237729|emb|CAF26919.1| hypothetical protein BH01040 [Bartonella henselae str. Houston-1] Length = 230 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 128/224 (57%), Gaps = 4/224 (1%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKG 65 D +++L I VF+QLR VLGK+ G EKP +S + D ++ Sbjct: 4 DIVLVLALVIMVVVFMQLRNVLGKRIGFEKPPFDPYSSRSKKQIETETADNNASLSHQVN 63 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +K++ I+ + P G+ LNK +R + F P+ F+ A+ +YE IV +F +G + Sbjct: 64 SQKNDFSEIDAIAPEGSELNKGLRALHQNDPHFSPQFFIKGAQVAYEMIVTAFAKGDRNQ 123 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + +L+ V++ F+ ++ R+ N + V+ + VGI+ ++ + A+++E ++TIRIV + I Sbjct: 124 LRRLLSQDVFESFDAAIEQREKNNERVQFTFVGINKIEFVAAAMQEKEEFLTIRIVSEMI 183 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 SA+Y++ I DP+ ++ DIWTFVRN ++PNW L +T+ Sbjct: 184 SATYNEQGERIDGDPDTIVEIRDIWTFVRNSLSTDPNWKLFATE 227 >gi|319780601|ref|YP_004140077.1| import inner membrane translocase subunit Tim44 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166489|gb|ADV10027.1| import inner membrane translocase subunit Tim44 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 235 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 127/229 (55%), Gaps = 10/229 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKG 65 DF + F +F QLR VLG++TG+E+P +S +G +++ E +++L + Sbjct: 5 DFGTIFFLIAAVVIFFQLRNVLGRRTGSERPPFDPYSAARTGDKDAAQKSE-NVVSLPRK 63 Query: 66 K-----KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 + D +I+ T LNK +R I F+PK F++ A+ +YE IV ++ + Sbjct: 64 RPPGEPAPDAYAAIDAFAKPDTDLNKGLRTIKDNDPSFEPKGFVDGAKMAYEMIVMAYAD 123 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 G ++ L+ VY F ++ R++ + ++SS VGID I++A ++ ++T+RI Sbjct: 124 GDRKTLKNLLSREVYDGFVAAIGEREAKAEKIQSSFVGIDKADIVSAEMKGGEAHVTLRI 183 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + + ISA+ DK +I DPE +V D+WTF R+ +PNW L++T+ Sbjct: 184 ISELISATRDKAGAVIDGDPETVAEVKDVWTFARDTRSRDPNWKLVATE 232 >gi|62290918|ref|YP_222711.1| hypothetical protein BruAb1_2049 [Brucella abortus bv. 1 str. 9-941] gi|62197050|gb|AAX75350.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941] Length = 231 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 124/214 (57%), Gaps = 4/214 (1%) Query: 20 TFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG++TGNEKP ++ S + + +++L + + + +I+ Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D + Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 194 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I DP+ ++ D+WTF R+ +PNW L++T+ Sbjct: 195 IDGDPDNMVEIKDLWTFARDTNSRDPNWKLVATE 228 >gi|260467422|ref|ZP_05813593.1| import inner membrane translocase subunit Tim44 [Mesorhizobium opportunistum WSM2075] gi|259028818|gb|EEW30123.1| import inner membrane translocase subunit Tim44 [Mesorhizobium opportunistum WSM2075] Length = 236 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 127/230 (55%), Gaps = 11/230 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITL--- 62 DF + F +F QLR VLG++TG+E+P ++ +G +++ E +++L Sbjct: 5 DFGTIFFLIAAVVIFFQLRNVLGRRTGSERPPFDPYTAARTGDKDAAQKPE-NVVSLPRK 63 Query: 63 ---GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 G+ D +I+ T LNK +R I FDPK F++ A+ +YE IV ++ Sbjct: 64 RLPGEPAAPDAYAAIDAFAKPDTDLNKGLRTIKDNDPSFDPKGFVDGAKMAYEMIVMAYA 123 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ V+ F ++ R++ + ++SS VGID I++A ++ ++T+R Sbjct: 124 DGDRKTLKNLLSREVFDGFVAAIGEREAKSEKIQSSFVGIDKADIVSAEMKGGEAHVTLR 183 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I+ + ISA+ DK +I DPE +V D+WTF R+ +PNW L++T+ Sbjct: 184 IISELISATRDKAGTVIDGDPETVAEVKDVWTFARDTRSRDPNWKLVATE 233 >gi|23502922|ref|NP_699049.1| hypothetical protein BR2074 [Brucella suis 1330] gi|82700829|ref|YP_415403.1| calcium-binding EF-hand [Brucella melitensis biovar Abortus 2308] gi|225626454|ref|ZP_03784493.1| import inner membrane translocase subunit Tim44 [Brucella ceti str. Cudo] gi|237816425|ref|ZP_04595418.1| Tim44-like domain protein [Brucella abortus str. 2308 A] gi|256370472|ref|YP_003107983.1| hypothetical protein BMI_I2096 [Brucella microti CCM 4915] gi|23348955|gb|AAN30964.1| conserved hypothetical protein [Brucella suis 1330] gi|82616930|emb|CAJ12031.1| Calcium-binding EF-hand [Brucella melitensis biovar Abortus 2308] gi|225618111|gb|EEH15154.1| import inner membrane translocase subunit Tim44 [Brucella ceti str. Cudo] gi|237788492|gb|EEP62707.1| Tim44-like domain protein [Brucella abortus str. 2308 A] gi|256000635|gb|ACU49034.1| hypothetical protein BMI_I2096 [Brucella microti CCM 4915] Length = 235 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 124/214 (57%), Gaps = 4/214 (1%) Query: 20 TFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG++TGNEKP ++ S + + +++L + + + +I+ Sbjct: 19 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 78 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 79 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 138 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D + Sbjct: 139 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 198 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I DP+ ++ D+WTF R+ +PNW L++T+ Sbjct: 199 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATE 232 >gi|161619988|ref|YP_001593875.1| import inner membrane translocase subunit Tim44 [Brucella canis ATCC 23365] gi|163844092|ref|YP_001628496.1| import inner membrane translocase subunit Tim44 [Brucella suis ATCC 23445] gi|189025131|ref|YP_001935899.1| Calcium-binding EF-hand [Brucella abortus S19] gi|254690207|ref|ZP_05153461.1| Calcium-binding EF-hand [Brucella abortus bv. 6 str. 870] gi|254694697|ref|ZP_05156525.1| Calcium-binding EF-hand [Brucella abortus bv. 3 str. Tulya] gi|254696324|ref|ZP_05158152.1| Calcium-binding EF-hand [Brucella abortus bv. 2 str. 86/8/59] gi|254700706|ref|ZP_05162534.1| Calcium-binding EF-hand [Brucella suis bv. 5 str. 513] gi|254705077|ref|ZP_05166905.1| Calcium-binding EF-hand [Brucella suis bv. 3 str. 686] gi|254709052|ref|ZP_05170863.1| Calcium-binding EF-hand [Brucella pinnipedialis B2/94] gi|254713521|ref|ZP_05175332.1| Calcium-binding EF-hand [Brucella ceti M644/93/1] gi|254716123|ref|ZP_05177934.1| Calcium-binding EF-hand [Brucella ceti M13/05/1] gi|254718117|ref|ZP_05179928.1| Calcium-binding EF-hand [Brucella sp. 83/13] gi|254731240|ref|ZP_05189818.1| Calcium-binding EF-hand [Brucella abortus bv. 4 str. 292] gi|256030577|ref|ZP_05444191.1| Calcium-binding EF-hand [Brucella pinnipedialis M292/94/1] gi|256060039|ref|ZP_05450221.1| Calcium-binding EF-hand [Brucella neotomae 5K33] gi|260169483|ref|ZP_05756294.1| Calcium-binding EF-hand [Brucella sp. F5/99] gi|260546180|ref|ZP_05821920.1| calcium-binding EF-hand protein [Brucella abortus NCTC 8038] gi|260567455|ref|ZP_05837925.1| calcium-binding EF-hand protein [Brucella suis bv. 4 str. 40] gi|260755747|ref|ZP_05868095.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 6 str. 870] gi|260758971|ref|ZP_05871319.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 4 str. 292] gi|260760695|ref|ZP_05873038.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 2 str. 86/8/59] gi|261215024|ref|ZP_05929305.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 3 str. Tulya] gi|261217893|ref|ZP_05932174.1| import inner membrane translocase subunit Tim44 [Brucella ceti M13/05/1] gi|261316550|ref|ZP_05955747.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis B2/94] gi|261321257|ref|ZP_05960454.1| import inner membrane translocase subunit Tim44 [Brucella ceti M644/93/1] gi|261324015|ref|ZP_05963212.1| import inner membrane translocase subunit Tim44 [Brucella neotomae 5K33] gi|261751215|ref|ZP_05994924.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 5 str. 513] gi|261755779|ref|ZP_05999488.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 3 str. 686] gi|261759008|ref|ZP_06002717.1| calcium-binding EF-hand protein [Brucella sp. F5/99] gi|265983069|ref|ZP_06095804.1| import inner membrane translocase subunit Tim44 [Brucella sp. 83/13] gi|265987624|ref|ZP_06100181.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M292/94/1] gi|306839744|ref|ZP_07472546.1| import inner membrane translocase subunit Tim44 [Brucella sp. NF 2653] gi|306842810|ref|ZP_07475450.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO2] gi|306843493|ref|ZP_07476094.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO1] gi|161336799|gb|ABX63104.1| import inner membrane translocase subunit Tim44 [Brucella canis ATCC 23365] gi|163674815|gb|ABY38926.1| import inner membrane translocase subunit Tim44 [Brucella suis ATCC 23445] gi|189020703|gb|ACD73425.1| Calcium-binding EF-hand [Brucella abortus S19] gi|260096287|gb|EEW80163.1| calcium-binding EF-hand protein [Brucella abortus NCTC 8038] gi|260156973|gb|EEW92053.1| calcium-binding EF-hand protein [Brucella suis bv. 4 str. 40] gi|260669289|gb|EEX56229.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 4 str. 292] gi|260671127|gb|EEX57948.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 2 str. 86/8/59] gi|260675855|gb|EEX62676.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 6 str. 870] gi|260916631|gb|EEX83492.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 3 str. Tulya] gi|260922982|gb|EEX89550.1| import inner membrane translocase subunit Tim44 [Brucella ceti M13/05/1] gi|261293947|gb|EEX97443.1| import inner membrane translocase subunit Tim44 [Brucella ceti M644/93/1] gi|261295773|gb|EEX99269.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis B2/94] gi|261299995|gb|EEY03492.1| import inner membrane translocase subunit Tim44 [Brucella neotomae 5K33] gi|261738992|gb|EEY26988.1| calcium-binding EF-hand protein [Brucella sp. F5/99] gi|261740968|gb|EEY28894.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 5 str. 513] gi|261745532|gb|EEY33458.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 3 str. 686] gi|264659821|gb|EEZ30082.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M292/94/1] gi|264661661|gb|EEZ31922.1| import inner membrane translocase subunit Tim44 [Brucella sp. 83/13] gi|306276184|gb|EFM57884.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO1] gi|306287004|gb|EFM58515.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO2] gi|306405204|gb|EFM61481.1| import inner membrane translocase subunit Tim44 [Brucella sp. NF 2653] Length = 231 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 124/214 (57%), Gaps = 4/214 (1%) Query: 20 TFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG++TGNEKP ++ S + + +++L + + + +I+ Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D + Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 194 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I DP+ ++ D+WTF R+ +PNW L++T+ Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATE 228 >gi|256112399|ref|ZP_05453320.1| transporter [Brucella melitensis bv. 3 str. Ether] gi|265993836|ref|ZP_06106393.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 3 str. Ether] gi|262764817|gb|EEZ10738.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 3 str. Ether] Length = 231 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 70/214 (32%), Positives = 125/214 (58%), Gaps = 4/214 (1%) Query: 20 TFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERG---IITLGKGKKKDNLDSIN 75 +FLQLR VLG++TGNEKP F + S + + G +++L + + + +I+ Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGGPDNVVSLPRRANEKDYTAID 74 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D + Sbjct: 135 EGFVAAIDEREKQGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 194 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I DP+ ++ D+WTF R+ +PNW L++T+ Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATE 228 >gi|256158573|ref|ZP_05456463.1| calcium-binding EF-hand [Brucella ceti M490/95/1] gi|256253984|ref|ZP_05459520.1| calcium-binding EF-hand [Brucella ceti B1/94] gi|261221124|ref|ZP_05935405.1| import inner membrane translocase subunit Tim44 [Brucella ceti B1/94] gi|265997084|ref|ZP_06109641.1| import inner membrane translocase subunit Tim44 [Brucella ceti M490/95/1] gi|260919708|gb|EEX86361.1| import inner membrane translocase subunit Tim44 [Brucella ceti B1/94] gi|262551552|gb|EEZ07542.1| import inner membrane translocase subunit Tim44 [Brucella ceti M490/95/1] Length = 231 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 124/214 (57%), Gaps = 4/214 (1%) Query: 20 TFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG++TGNEKP ++ S + + +++L + + + +I+ Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D + Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQIISSTLDRDGKV 194 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I DP+ ++ D+WTF R+ +PNW L++T+ Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATE 228 >gi|17988336|ref|NP_540970.1| transporter [Brucella melitensis bv. 1 str. 16M] gi|17984111|gb|AAL53234.1| transporter [Brucella melitensis bv. 1 str. 16M] Length = 216 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 70/213 (32%), Positives = 125/213 (58%), Gaps = 4/213 (1%) Query: 21 FFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERG---IITLGKGKKKDNLDSINE 76 +FLQLR VLG++TGNEKP F + S + + G +++L + + + +I++ Sbjct: 1 MIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGGPDNVVSLPRRANEKDYTAIDK 60 Query: 77 LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136 + P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY+ Sbjct: 61 IAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVYE 120 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196 F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D +I Sbjct: 121 GFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKVI 180 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 DP+ ++ D+WTF R+ +PNW L++T+ Sbjct: 181 DGDPDNVVEIKDLWTFARDTNSRDPNWKLVATE 213 >gi|225853505|ref|YP_002733738.1| import inner membrane translocase subunit Tim44 [Brucella melitensis ATCC 23457] gi|256045678|ref|ZP_05448556.1| transporter [Brucella melitensis bv. 1 str. Rev.1] gi|256263013|ref|ZP_05465545.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 2 str. 63/9] gi|260562979|ref|ZP_05833465.1| calcium-binding EF-hand protein [Brucella melitensis bv. 1 str. 16M] gi|265992099|ref|ZP_06104656.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 1 str. Rev.1] gi|225641870|gb|ACO01784.1| import inner membrane translocase subunit Tim44 [Brucella melitensis ATCC 23457] gi|260152995|gb|EEW88087.1| calcium-binding EF-hand protein [Brucella melitensis bv. 1 str. 16M] gi|263003165|gb|EEZ15458.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 1 str. Rev.1] gi|263092886|gb|EEZ17061.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 2 str. 63/9] gi|326410072|gb|ADZ67137.1| import inner membrane translocase subunit Tim44 [Brucella melitensis M28] gi|326539788|gb|ADZ88003.1| import inner membrane translocase subunit Tim44 [Brucella melitensis M5-90] Length = 231 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 70/214 (32%), Positives = 125/214 (58%), Gaps = 4/214 (1%) Query: 20 TFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERG---IITLGKGKKKDNLDSIN 75 +FLQLR VLG++TGNEKP F + S + + G +++L + + + +I+ Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGGPDNVVSLPRRANEKDYTAID 74 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D + Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 194 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I DP+ ++ D+WTF R+ +PNW L++T+ Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATE 228 >gi|49473777|ref|YP_031819.1| hypothetical protein BQ00970 [Bartonella quintana str. Toulouse] gi|49239280|emb|CAF25603.1| hypothetical protein BQ00970 [Bartonella quintana str. Toulouse] Length = 230 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 130/224 (58%), Gaps = 4/224 (1%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG--IITLGK--G 65 + +++L I VF+QLR VLGK+ G EKP +SG+ E I++ Sbjct: 4 NIVLVLALVIMVVVFVQLRNVLGKRIGFEKPPFDPYSGRSKKQTETETADNIVSFPHQGN 63 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +K++ I+ + P G+ LN+ +R + F P+ F+ A+ +YE IV +F +G Sbjct: 64 SQKNDFSEIDAISPKGSALNEGLRALRQSDPHFSPQFFIKGAQVAYEMIVTAFAKGDRDQ 123 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 ++KL+ V++ F ++ R+ N + V+ + VGI+ ++ + A++++N ++T+RIV + I Sbjct: 124 LKKLLSQNVFESFCAAIEQREKNNERVQFTFVGINKIEFVAAAMQDNEEFLTVRIVSEMI 183 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 SA+Y++ LI DP+ ++ D+WTFV N S+PNW L +T+ Sbjct: 184 SATYNEQEELIDGDPDAIVEIRDVWTFVHNSLSSDPNWKLFATE 227 >gi|254500164|ref|ZP_05112315.1| Tim44-like domain family [Labrenzia alexandrii DFL-11] gi|222436235|gb|EEE42914.1| Tim44-like domain family [Labrenzia alexandrii DFL-11] Length = 245 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 130/228 (57%), Gaps = 17/228 (7%) Query: 22 FVFLQLRGVLGKKTGNEKP----------FSGFFSGK------YVFSKRDERGIITLGKG 65 F+ +LR VLGK+TG E+P +G +G+ ++ G + Sbjct: 18 FILFRLRSVLGKRTGEERPPFDPYSKPEQQNGQANGQDNVIPLPHQGQQSPEGYDDMAPA 77 Query: 66 KKKDNLDS-INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 +++++ + I+++ P G+ LN ++ I+SV F+P+ F+ A+ +YE IV +F +G Sbjct: 78 RQEEDGEVVIDKVAPAGSALNNALKQILSVDRSFEPEPFIQGAKAAYEMIVMAFADGDKK 137 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 A++ L+ V++ F+ ++ R+ + ++S+ VGID +I+ A++++ T +T+RI Q Sbjct: 138 ALKNLLSRDVFEGFSAAIDDREKRGETIESTFVGIDKAEIVEAALKDTTAQVTVRIHSQL 197 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ISA+ DK ++ DP +VIDIWTF R+ +PNW L++T+ E Sbjct: 198 ISATRDKGGEVVDGDPAKVTEVIDIWTFARDTATRDPNWKLVATESAE 245 >gi|297247302|ref|ZP_06931020.1| hypothetical protein BAYG_00201 [Brucella abortus bv. 5 str. B3196] gi|297174471|gb|EFH33818.1| hypothetical protein BAYG_00201 [Brucella abortus bv. 5 str. B3196] Length = 235 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 124/214 (57%), Gaps = 4/214 (1%) Query: 20 TFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG++TGNEKP ++ S + + +++L + + + +I+ Sbjct: 19 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 78 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 79 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 138 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D + Sbjct: 139 EGFVAAIDEREKWGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 198 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I DP+ ++ D+WTF R+ +PNW L++T+ Sbjct: 199 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATE 232 >gi|294851303|ref|ZP_06791976.1| hypothetical protein BAZG_00203 [Brucella sp. NVSL 07-0026] gi|294819892|gb|EFG36891.1| hypothetical protein BAZG_00203 [Brucella sp. NVSL 07-0026] Length = 235 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 123/214 (57%), Gaps = 4/214 (1%) Query: 20 TFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG +TGNEKP ++ S + + +++L + + + +I+ Sbjct: 19 AVIIFLQLRNVLGCRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 78 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 79 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 138 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D + Sbjct: 139 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 198 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I DP+ ++ D+WTF R+ +PNW L++T+ Sbjct: 199 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATE 232 >gi|256258462|ref|ZP_05463998.1| calcium-binding EF-hand [Brucella abortus bv. 9 str. C68] gi|260884773|ref|ZP_05896387.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 9 str. C68] gi|260874301|gb|EEX81370.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 9 str. C68] Length = 231 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 124/214 (57%), Gaps = 4/214 (1%) Query: 20 TFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG++TGNEKP ++ S + + +++L + + + +I+ Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D + Sbjct: 135 EGFVAAIDEREKWGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 194 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I DP+ ++ D+WTF R+ +PNW L++T+ Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATE 228 >gi|148559170|ref|YP_001259879.1| hypothetical protein BOV_1994 [Brucella ovis ATCC 25840] gi|148370427|gb|ABQ60406.1| conserved hypothetical protein [Brucella ovis ATCC 25840] Length = 231 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 123/214 (57%), Gaps = 4/214 (1%) Query: 20 TFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG++TGNEKP ++ S + + +++L + + + +I+ Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDRKVLKNLLSKDVY 134 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS+ D+D + Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSILDRDGKV 194 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I DP+ ++ D+WTF R+ +PNW L++T+ Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATE 228 >gi|114706069|ref|ZP_01438972.1| Calcium-binding EF-hand [Fulvimarina pelagi HTCC2506] gi|114538915|gb|EAU42036.1| Calcium-binding EF-hand [Fulvimarina pelagi HTCC2506] Length = 229 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 126/233 (54%), Gaps = 23/233 (9%) Query: 19 ITFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERG---------IITLGKGKKK 68 + V QL VLG++TGNE+P F + + RD G ++TL + Sbjct: 1 MAAIVLFQLYNVLGRRTGNERPPFDPYTRNR----SRDRSGESEDAAGDNVVTLPNRRAN 56 Query: 69 D-NLD--------SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 D N D I+ + GT LNK +R I +FDPK+FL A+ +YE +VD+F Sbjct: 57 DRNEDVPAGVRYAEIDRVSETGTPLNKELRKIKDADPNFDPKEFLEGAKIAYEMVVDAFA 116 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G + + L+ VY+ F +++TR+ + + ++SS +GIDD KI++A + +TIR Sbjct: 117 QGDRNTLRNLLSPDVYEGFEAAIATREESGETMRSSFIGIDDAKIVSAELRGREALVTIR 176 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 IV + ISA+ + + ++ D E +V DIWTF R+ +PNW L+ T+ E Sbjct: 177 IVSEMISATLNSNGDVLDGDMETVVEVRDIWTFGRDTKSRDPNWKLVGTESEE 229 >gi|240849776|ref|YP_002971164.1| putative translocase transmembrane protein [Bartonella grahamii as4aup] gi|240266899|gb|ACS50487.1| putative translocase transmembrane protein [Bartonella grahamii as4aup] Length = 230 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 130/223 (58%), Gaps = 5/223 (2%) Query: 12 LILLFAFITFFV-FLQLRGVLGKKTGNEKPFSGFFS--GKYVFSKRDERGIITL--GKGK 66 +IL+ A + V F+QLR VLGK+ G EKP +S K I++ K Sbjct: 5 VILVIALVVMVVIFVQLRNVLGKRIGFEKPPFDPYSRRSKKQVEAETADNIVSFPHQKNS 64 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 +KD+ I+++ P G+ LNK +R++ + F P+ F+ A+ +YE IV +F +G + + Sbjct: 65 QKDDFSEIDKISPEGSILNKNLRELHKIDPQFSPQFFIKGAQIAYEMIVTAFAKGDRNQL 124 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + L+ V++ F ++ R+ N++ ++ + VGI+ ++ + A+I+E +TIRIV + IS Sbjct: 125 KSLLCQDVFESFCTAIEQREKNKERIEFTFVGINKIEFVAAAIQEKDELLTIRIVSEMIS 184 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 +Y++ I DP+ ++ DIWTFVRN S+PNW L +T+ Sbjct: 185 VTYNEQGERIDGDPDAIVEIRDIWTFVRNSLSSDPNWKLFATE 227 >gi|92115749|ref|YP_575478.1| import inner membrane translocase, subunit Tim44 [Nitrobacter hamburgensis X14] gi|91798643|gb|ABE61018.1| import inner membrane translocase, subunit Tim44 [Nitrobacter hamburgensis X14] Length = 234 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 10/229 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64 D ++F + F+FL+LR VLG++TG+E+P + + + +D+ + G Sbjct: 2 DIYTIIFLALAVFIFLRLRSVLGQRTGSERPPYDRATREVLHGTQDKNVVPMAGPVIDQA 61 Query: 65 -----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 D L GT L + I + + FDPK F++ AR++YE IV +F Sbjct: 62 SSAPTADAASTPDRWKNLAEPGTPLALGLDAIAAHDSSFDPKHFISGARSAYEMIVLAFA 121 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 G ++ L+ S VY+ F+ ++ R+ E+ ++ V ID +++I A + ++ +T+R Sbjct: 122 NGDRRTLKDLLSSDVYESFDAAIKDREKLEQKTETRFVSIDKVELIGAELRDSAEQLTVR 181 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + Q IS + DK ++ +PE + D+WTF R+IP +PNW L+ T Sbjct: 182 FISQMISMTRDKTGAIVDGNPEKISDITDVWTFARDIPSRDPNWKLVGT 230 >gi|90420989|ref|ZP_01228893.1| conserved hypothetical protein, Tim44 domain [Aurantimonas manganoxydans SI85-9A1] gi|90334767|gb|EAS48543.1| conserved hypothetical protein, Tim44 domain [Aurantimonas manganoxydans SI85-9A1] Length = 238 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 123/234 (52%), Gaps = 17/234 (7%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG----IITLGKGK 66 F + F + V QLR VLGK+TGNE+P +S + + RD+ ++TL + Sbjct: 3 FGTIFFIIVAAIVLFQLRSVLGKRTGNERPPFDPYSRRD--APRDDAARNDNVVTLPNRR 60 Query: 67 KKDNLD-----------SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115 ++ +I+++ GT +N +R I FDPK+FL+ A+ +YE IV Sbjct: 61 GGTEIEGEAAPAATPYEAIDKVAKPGTPVNAELRRIRDADPSFDPKEFLDGAKVAYEMIV 120 Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY 175 +F +G ++ L+ VYQ F ++S R+ ++ ++ S VGIDD I+ A ++ Sbjct: 121 TAFADGDRKLLKNLLSPDVYQGFEQAISEREQRDERMQFSFVGIDDATIVGAEQKDREAM 180 Query: 176 ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 +T+RIV Q ISA D ++ D E +V D+WTF R+ +PNW L T+ Sbjct: 181 VTLRIVAQVISAVVKPDETVVDGDLETVVEVKDVWTFARDTRSRDPNWKLAGTE 234 >gi|319406501|emb|CBI80142.1| Tim44 domain protein [Bartonella sp. 1-1C] Length = 230 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 119/210 (56%), Gaps = 4/210 (1%) Query: 24 FLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFP 79 F+QLR VLGK+ G EKP +SG+ K D+ + +K + I+ + P Sbjct: 18 FVQLRNVLGKRVGFEKPPFDSYSGYTKKPIEVEKNDKIVSLPDQSSSQKGDFSEIDAIAP 77 Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 G++LN +R I F P+ F+N + YE I+ +F +G + +++ + S V++ F Sbjct: 78 EGSKLNSGLRSIRQFDPSFSPQFFVNGVQIVYEIIMTAFAQGDRNRLKEHLSSDVFESFC 137 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199 +++ R+ N + ++ + VGI ++ I A +++ +T+RI+ + ISA+Y++ I + Sbjct: 138 EAIELREKNNERIQFTFVGISKIEFIAAEMQKEEALLTVRIISEMISATYNEQEECIEGN 197 Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 PE ++ DIWTF+RNI NPNW L +T+ Sbjct: 198 PEAIIEIRDIWTFIRNITSKNPNWKLFATE 227 >gi|319403587|emb|CBI77169.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 230 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 117/208 (56%), Gaps = 4/208 (1%) Query: 26 QLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIG 81 QLR VLGK+ G EKP +SG+ K D+ + +K + I+ + G Sbjct: 20 QLRNVLGKRIGFEKPPFDSYSGYTKKPVEVEKNDKIVSLPDQSSSQKSDFSEIDAIASEG 79 Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 ++LN +R I F P+ F+N + YE I+ +F +G + +++ + S V++ F ++ Sbjct: 80 SKLNSGLRSIRQFDPSFSPQFFVNGVQIVYEIIMTAFAQGDRNQLKEHLSSDVFESFCEA 139 Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201 + R+ N + ++ + VGI ++ I A +++ ++T+RIV + ISA+Y++ I +PE Sbjct: 140 IELREKNNERIQFTFVGISKIEFIAAEMQKEEAFLTVRIVSEIISATYNEQEECIEGNPE 199 Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTK 229 ++ DIWTFVRNI NPNW L +T+ Sbjct: 200 AIIEIRDIWTFVRNITSKNPNWKLFATE 227 >gi|75674306|ref|YP_316727.1| hypothetical protein Nwi_0107 [Nitrobacter winogradskyi Nb-255] gi|74419176|gb|ABA03375.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 234 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 119/232 (51%), Gaps = 16/232 (6%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64 D ++F + F+FL+LR VLG++TG+E+P + + + +D + G Sbjct: 2 DIYTIIFLALAVFIFLRLRSVLGQRTGSERPPYDRATREVLGGTQDNNVVPVPGTVINQS 61 Query: 65 --------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116 G D S+ E GT L + I + + FDP FL+ AR++YE IV Sbjct: 62 SAAPSADVGGAADRWKSVAEP---GTPLALGLDAIAAQDSSFDPAHFLSGARSAYEMIVL 118 Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F G ++ L+ S VY+ F+ ++ R+ E+ ++ V ID +++I A + + + Sbjct: 119 AFANGDRRTLKDLLSSDVYESFDAAIKDRERLEQKTETRFVSIDKVELIGAEVRDGAEQL 178 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 T+R + Q IS + DK ++ +PE + D+WTF R+I +PNW L+ T Sbjct: 179 TVRFISQMISVTRDKTGAIVDGNPEKISDITDVWTFARDISSRDPNWKLVGT 230 >gi|146337371|ref|YP_001202419.1| hypothetical protein BRADO0204 [Bradyrhizobium sp. ORS278] gi|146190177|emb|CAL74169.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278] Length = 233 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 115/234 (49%), Gaps = 20/234 (8%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEK-PFSGFFSGKYVFSKRDERGIITLGK---- 64 D ++F + F+FL+LR VLG++TG+E+ PF + + D + G Sbjct: 2 DIYTIIFLGLAVFIFLRLRSVLGQRTGSERTPFD--RTARNAVGAPDNHVMPVPGAPLDP 59 Query: 65 ----------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 G D I E GT L + + I + FDP+ FL AR++YE I Sbjct: 60 AGPSTGAADFGAPSDRWRGIAE---PGTPLARGLDAIAANDASFDPRHFLTGARSAYEMI 116 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 V +F G A+ L+ S VY F+ + R+ NE+ ++ V ID +++NA + T Sbjct: 117 VLAFANGDRRALRDLLSSEVYDSFDAVIKDREKNEQKTETRFVSIDTAELVNAEARDRTA 176 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 +T+R V Q IS + DK ++ +P+ + DIWTF R+ +PNW L+ T Sbjct: 177 QLTVRFVSQMISVTRDKTGNIVDGNPDKVADITDIWTFARDTGSRDPNWKLVGT 230 >gi|90421823|ref|YP_530193.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisB18] gi|90103837|gb|ABD85874.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisB18] Length = 233 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 114/228 (50%), Gaps = 9/228 (3%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 D ++F + F+FL+LR VLG+KTGNE+P + V +D + + Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQKTGNERPPFDRAARDVVRGAQDNVVPLPGAVVDQAP 61 Query: 70 NLDSINELFPI---------GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 S + + P GT L + + IV+ + FDP+ FL AR +YE IV +F Sbjct: 62 QTPSADVVPPTDRWKGVAEPGTPLAQGLNAIVAQDSSFDPQHFLTGARGAYEMIVLAFAN 121 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 G A++ L+ VY F + R+ E+ ++ V ID ++++A + +T+R Sbjct: 122 GDRRALKDLLSPEVYDSFEAVIREREKQEQKTETRFVSIDKAELVSAEARDRAAQLTVRF 181 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 V Q I+ + DK ++ +P+ + D+WTF R++ +PNW L+ T Sbjct: 182 VSQMITVTRDKTGAIVDGNPDKVADITDVWTFARDVGSRDPNWKLVGT 229 >gi|163757477|ref|ZP_02164566.1| hypothetical protein HPDFL43_18742 [Hoeflea phototrophica DFL-43] gi|162284979|gb|EDQ35261.1| hypothetical protein HPDFL43_18742 [Hoeflea phototrophica DFL-43] Length = 234 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 68/215 (31%), Positives = 118/215 (54%), Gaps = 7/215 (3%) Query: 22 FVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRD---ERGIITLGK----GKKKDNLDSI 74 VF+QLR VLGK+TG+E+P + +D + ++TL + + D ++ Sbjct: 17 IVFIQLRAVLGKRTGHERPPREQMERRDQTDAQDGIDDPKVVTLPRRGREAAEPDAFAAV 76 Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 + G+ LNK +R++V F+PK+F+ A +YE IV ++ +G ++ L+ V Sbjct: 77 DAYAEPGSDLNKGLRELVKADPSFNPKEFVGGATMAYEMIVSAYADGDRKTLKSLLSREV 136 Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNL 194 + F ++ R++ + V+S+ VGI+ II A ++ +T+RI+ Q ISA+ DKD Sbjct: 137 FDGFVSAIDEREARGETVRSNFVGIEKANIIQAEMKGTEANVTLRIISQLISATLDKDGE 196 Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 ++ D V D+WTF R+ +PNW LI+T+ Sbjct: 197 VVEGDLVEVTDVNDVWTFTRDTRSRDPNWRLIATE 231 >gi|163867402|ref|YP_001608597.1| hypothetical protein Btr_0112 [Bartonella tribocorum CIP 105476] gi|161017044|emb|CAK00602.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 230 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 127/223 (56%), Gaps = 5/223 (2%) Query: 12 LILLFAFITFFV-FLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDE--RGIITLGKGK-- 66 +IL+ A + V F+QLR VLGK+ G EKP +S + E I++ K Sbjct: 5 VILVIALVVMVVIFVQLRSVLGKRIGFEKPPFDPYSRRSKKQTEAETTENIVSFPHQKNL 64 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 +K + I+E+ P G+ LN+ +R + + F P+ F+ A+ +YE IV +F +G + Sbjct: 65 QKGDFSEIDEIAPEGSILNENLRALRRIDPHFSPQSFIKGAQIAYEMIVTAFAKGDRSQL 124 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + L+ V++ F + R+ N++ ++ + VGI+ ++ ++A+I+E +TIRI+ + IS Sbjct: 125 KSLLCQDVFESFCAVIEQREKNKERIEFTFVGINKIEFVSAAIQEKDELLTIRIISEMIS 184 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 +Y++ I +P+ ++ DIWTFVRN +PNW L +T+ Sbjct: 185 VTYNEQGERIDGNPDAIVEIRDIWTFVRNSLSPDPNWKLFATE 227 >gi|85714085|ref|ZP_01045074.1| hypothetical protein NB311A_08013 [Nitrobacter sp. Nb-311A] gi|85699211|gb|EAQ37079.1| hypothetical protein NB311A_08013 [Nitrobacter sp. Nb-311A] Length = 234 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 118/229 (51%), Gaps = 10/229 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64 D ++F + F+FL+LR VLG++TG+E+P + + + +D+ + G Sbjct: 2 DIYTIIFLALAVFIFLRLRSVLGQRTGSERPPYDGATREILRGAQDKNVVPVPGTVINQS 61 Query: 65 -----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + D +L GT L + I + + FDP FL+ AR++YE IV +F Sbjct: 62 SATPTADVGPSADRWKDLTEPGTALALGLDAIAAQDSSFDPGHFLSGARSAYEMIVLAFA 121 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 G ++ L+ S VY+ F+ ++ R+ E+ ++ V ID +++I A + + +T+R Sbjct: 122 NGDRRTLKDLLSSDVYESFDAAIKDRERLEQKTETRFVSIDKVELIGAELRDGAEQLTVR 181 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + Q IS + DK ++ +PE + D+WTF R I +PNW L+ T Sbjct: 182 FISQMISVTRDKTGAIVDGNPERISDITDVWTFAREISSRDPNWKLVGT 230 >gi|316931716|ref|YP_004106698.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris DX-1] gi|315599430|gb|ADU41965.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris DX-1] Length = 258 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 123/233 (52%), Gaps = 11/233 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL-GKGKKK 68 D ++F + F+FL+LR VLG++TGNE+P + + + S + + +I++ G + Sbjct: 25 DIYTIIFLALAVFIFLRLRNVLGQRTGNERPPFDRAAARDMISGKQDNNVISMPGTVIDQ 84 Query: 69 DNLDSINELFPIGTR----------LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + ++ P R L + I + FD + F++ A+++YE IV +F Sbjct: 85 APIAPNADVVPPSDRWKGIAEPDSELEHGLNAIAQHDSSFDARHFVDGAKSAYEMIVMAF 144 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 G ++ L+ S VY+ F+ ++ R+ N+ V+S V I+ ++I+A + + T +T+ Sbjct: 145 ANGDRRSLRDLLSSEVYESFDAAIKDREKNDLKVESRFVAIEKAELISAELRDRTAMLTL 204 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + V Q ISA+ DK ++ P+ + D+WTF R+ +PNW L+ T G Sbjct: 205 KFVSQMISATRDKTGAVVDGSPDKVTDITDVWTFARDTSSRDPNWKLVGTGSG 257 >gi|91974901|ref|YP_567560.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisB5] gi|91681357|gb|ABE37659.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisB5] Length = 235 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 119/238 (50%), Gaps = 19/238 (7%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERGIITLG----K 64 D ++F + F+FL+LR VLG++TG+E+P F + + K+D + G + Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDNNVVPMPGTVIDQ 61 Query: 65 GKKKDNLDSINEL----------FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 N D + P+ LN V+ S FD FL A+++YE I Sbjct: 62 SPTAPNADVVPPSDRWKGIAEPDSPLAHGLNAVLVQDSS----FDANHFLTGAKSAYEMI 117 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 V +F G A+ L+ + VY F+ ++ R+ NE+ ++ V ID +++ A + E+T Sbjct: 118 VMAFANGDRRALRDLLSTEVYDSFDAAIKDREKNERKTETRFVAIDKAELLGAEVREHTA 177 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +T++ V Q IS + DK ++ +P+ + D+WTF R+I +PNW L+ T G Sbjct: 178 QLTVKFVSQMISVTRDKAGAIVDGNPDKVADITDVWTFARDISSRDPNWKLVGTGSGH 235 >gi|115522403|ref|YP_779314.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisA53] gi|115516350|gb|ABJ04334.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisA53] Length = 233 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 118/239 (49%), Gaps = 23/239 (9%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRD------ERGIITLG 63 D ++F + F+FL+LR VLG++TG+E+P Y + RD E ++ + Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGDERP-------PYDRAARDLLRGSQEGNVVPMP 54 Query: 64 KGKKKDNLDSINELFPIGTRLNKV----------MRDIVSVYTDFDPKDFLNEARNSYEA 113 L ++ P R V + I + + FD + FL+ AR +YE Sbjct: 55 SPSIDPTLAPSADVTPPSDRWKSVAAPDSPLEHGLNAIAAHDSGFDAQHFLSGARGAYEM 114 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 IV +F G A++ L+ S VY F ++ R+ N+ ++ V ID +++ A + + + Sbjct: 115 IVLAFANGDRRALKDLLSSEVYDSFEAAIREREKNDHKTETRFVSIDKAELVTAEVRDRS 174 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +T+R V Q I+ + DK ++ +P+ + D+WTF R++ +PNW L+ T G+ Sbjct: 175 AQLTVRFVSQMITVTRDKTGAIVDGNPDKVADITDVWTFARDVASRDPNWKLVGTGSGQ 233 >gi|121602069|ref|YP_989543.1| Tim44 domain-containing protein [Bartonella bacilliformis KC583] gi|120614246|gb|ABM44847.1| Tim44 domain protein [Bartonella bacilliformis KC583] Length = 230 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 125/227 (55%), Gaps = 10/227 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKR----DERGIITLGKG 65 D + ++ + VF+QLR VLGK+TG E+P +SG SK+ D G IT Sbjct: 4 DVVFVIALVVMVIVFVQLRNVLGKRTGFERPPFNPYSGH---SKKQVEADTTGDITSFPQ 60 Query: 66 K---KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 + +K + I+ + P G+ LN +R I + F P+ F+N + +YE I+ +F +G Sbjct: 61 QINAQKGDFSDIDAIAPKGSALNDGLRAIRQADSSFSPQFFINGVQVAYEMIMTAFAQGN 120 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 +++L+ V++ F ++ R+ + ++ + VGI+ ++ I A +++ +T+RIV Sbjct: 121 RDQLKELLSQNVFESFCKAIEQREKRNERIQFTFVGINKVEFIAAEMQKREELLTVRIVS 180 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + IS Y++ I DPE ++ D+WTFVR+ NPNW L +T+ Sbjct: 181 EIISVIYNEQEERIDGDPEAIVEIRDVWTFVRDSVSKNPNWKLFATE 227 >gi|319405014|emb|CBI78623.1| Tim44 domain protein [Bartonella sp. AR 15-3] Length = 230 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 115/206 (55%), Gaps = 4/206 (1%) Query: 28 RGVLGKKTGNEKPFSGFFS--GKYVFSKRDERGIITL--GKGKKKDNLDSINELFPIGTR 83 R VLGK+ G EKP +S K + I++L KK+N IN + P + Sbjct: 22 RNVLGKRIGFEKPPFDSYSKHSKKQIERETSDNIVSLPDQSSSKKNNFSEINTIAPEKSA 81 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 LN +R I + F P+ F+N + YE I+ +F +G +++ + S V++ F +++ Sbjct: 82 LNSGLRAISLADSSFSPQFFINGVQIVYEIIMTAFAQGNRDQLKEHLSSDVFESFCEAIE 141 Query: 144 TRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203 R+ N + ++ + VGI+ ++ I A +++ ++T+RIV + ISA+Y++ I DPE Sbjct: 142 QREKNNERIQFTFVGINKIEFIAAEMQKEEAFLTVRIVSEIISATYNEREEYIDGDPEAI 201 Query: 204 GKVIDIWTFVRNIPPSNPNWVLISTK 229 ++ DIWTFVRN NPNW L +T+ Sbjct: 202 IEIRDIWTFVRNTTSKNPNWKLFATE 227 >gi|254472289|ref|ZP_05085689.1| import inner membrane translocase, subunit Tim44 [Pseudovibrio sp. JE062] gi|211958572|gb|EEA93772.1| import inner membrane translocase, subunit Tim44 [Pseudovibrio sp. JE062] Length = 248 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 132/241 (54%), Gaps = 21/241 (8%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEK-PFSGFFSGKYVFSKR-----DERGIITL- 62 D ++F +FL+LR VLG +TGNE+ PF + + + S++ +E +I L Sbjct: 6 DVYNIIFLIAAVVIFLRLRSVLGNRTGNERQPFDPYSAQQKQDSQKTQAPENEDNVIPLP 65 Query: 63 -----------GKGKKKDNLDS-INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNS 110 + + ++ +++ I+++ GT LN +R+I F+PK+F+ AR + Sbjct: 66 GSEHVHHDPERAEREAREQIEAEIDKVAKKGTDLNHGLREIWKAEPSFNPKEFVEGARGA 125 Query: 111 YEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA--S 168 YE I+ SF +G ++ L+ V+ F+ ++ R+S + V+S+ VGID I+ A + Sbjct: 126 YEIILMSFAQGDRRTLKDLLSPEVFTGFSAAIDDRESRNERVESTFVGIDKADIVEAVFN 185 Query: 169 IEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 +++ +T+R Q I+A+ D +N ++ DP ++ DIWTF R ++PNW L++T Sbjct: 186 QKDSLAEVTVRFKSQLITATRDSENRIVDGDPTAVSELTDIWTFARVTGVNDPNWKLVAT 245 Query: 229 K 229 + Sbjct: 246 E 246 >gi|148251774|ref|YP_001236359.1| hypothetical protein BBta_0156 [Bradyrhizobium sp. BTAi1] gi|146403947|gb|ABQ32453.1| hypothetical protein BBta_0156 [Bradyrhizobium sp. BTAi1] Length = 233 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 118/232 (50%), Gaps = 16/232 (6%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEK-PFSGFFSGKYVFSKRD----------ERG 58 D ++F + F+F++LR VLG++TG+E+ PF + + + Sbjct: 2 DIYTIIFLALAVFIFVRLRAVLGQRTGSERTPFDRAARNAVQGAPDNHVMPVPGAPLDPA 61 Query: 59 IITLGK--GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116 + T G G D + E GT L + + +V+ FDP+ FL AR++YE IV Sbjct: 62 VATAGAEPGVPSDRWRGVAEP---GTPLARGLDAVVANDPSFDPRHFLTGARSAYEMIVL 118 Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F G A+ L+ S VY F+ + R+ +E+ ++ V ID ++++A + + T + Sbjct: 119 AFANGDRRALRDLLSSEVYDSFDAVIKDREKHEQKTETRFVSIDTAELVSADLRDRTAQL 178 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 T+R V Q IS + DK ++ +P+ + DIWTF R+ +PNW L+ T Sbjct: 179 TVRFVSQMISVTRDKMGNIVDGNPDKVADITDIWTFARDTGSRDPNWKLVGT 230 >gi|298293768|ref|YP_003695707.1| import inner membrane translocase subunit Tim44 [Starkeya novella DSM 506] gi|296930279|gb|ADH91088.1| import inner membrane translocase subunit Tim44 [Starkeya novella DSM 506] Length = 241 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 123/238 (51%), Gaps = 20/238 (8%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKG 65 D ++F + F+F++LR VLG++TG E+P +S K D+ +++ Sbjct: 3 DIYTIIFLALAVFIFIRLRSVLGQRTGRERPPYDPYSRRDPAKAPAGPADK--VVSFPGA 60 Query: 66 KKKDNLDSINE--------------LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY 111 +K ++ E + +G+ + + I + FD + FL AR +Y Sbjct: 61 AEKPSVPEPAEATESDEPAPARWAGVAEVGSAVANGLDAIAAQERGFDAQHFLTGARAAY 120 Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171 E IV +F G A+++L+ V++ F+ +++ R+ + +++ VGI+ ++II A ++ Sbjct: 121 EMIVVAFANGDRAALKELLAREVFEGFSAAIAEREQRGEKMETQFVGIEKVEIIEAGVKG 180 Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + +T+R + Q IS + DK +I DPE V D+WTF R + +PNW L++T+ Sbjct: 181 RSAQMTLRFLSQLISVTRDKAGRVIDGDPEQVADVTDVWTFARELGTRDPNWKLVATE 238 >gi|13473820|ref|NP_105388.1| hypothetical protein mlr4544 [Mesorhizobium loti MAFF303099] gi|14024571|dbj|BAB51174.1| mlr4544 [Mesorhizobium loti MAFF303099] Length = 211 Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 116/210 (55%), Gaps = 12/210 (5%) Query: 30 VLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITL------GKGKKKDNLDSINELFP 79 +LG++TG+E+P +S + K K + +++L G+ D +I+ Sbjct: 1 MLGRRTGSERPPFDPYSAARTDKDATQKPE--NVVSLPRKRLPGEPAPADAYTAIDAFAK 58 Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 T LNK +R I FDPK F++ A+ +YE IV ++ +G ++ L+ V+ F Sbjct: 59 PDTDLNKGLRAIKDNDPSFDPKGFVDGAKMAYEMIVMAYADGDRKTLKNLLSREVFDGFV 118 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199 ++ R++ + ++SS VGID I++A ++ ++T+RI+ + ISA+ DK +I D Sbjct: 119 AAIGEREAKSEKIQSSFVGIDKADIVSAEMKGGEAHVTLRIISELISATRDKAGTVIDGD 178 Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 PE +V D+WTF R+ +PNW LI+T+ Sbjct: 179 PETVAEVKDVWTFARDTRSRDPNWKLIATE 208 >gi|86747526|ref|YP_484022.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris HaA2] gi|86570554|gb|ABD05111.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris HaA2] Length = 235 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 116/230 (50%), Gaps = 11/230 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERGIITLGKGKKK 68 D ++F + F+FL+LR VLG++TG+E+P F + + K+D + G + Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDTNVVSMPGSVIDQ 61 Query: 69 DNLDSINELFPIGTR----------LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + ++ P R L + + + + FD FL+ A+ +YE IV +F Sbjct: 62 SPIAPSADVVPPSDRWKGIAEPDSPLEHGLNAVFTQDSSFDANHFLSGAKGAYEMIVMAF 121 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 G A++ L+ S VY+ F ++ R+ NE ++ V I+ +++ A + ++ +T+ Sbjct: 122 ANGDRRALKDLLSSEVYESFEAAIKDREKNELKTETRFVAIEKAELLGAEVRDHVAQLTV 181 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + V Q IS + DK ++ P+ + D+WTF R+I +PNW L+ T Sbjct: 182 KFVSQMISVTRDKAGAVVDGSPDKVADITDVWTFARDISSRDPNWKLVGT 231 >gi|192288736|ref|YP_001989341.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris TIE-1] gi|192282485|gb|ACE98865.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris TIE-1] Length = 235 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 119/233 (51%), Gaps = 11/233 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERGIITLGKGKKK 68 D ++F + F+FL+LR VLG++TG+E+P F + + K+D + G + Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDNNVVSMPGTVIDQ 61 Query: 69 DNLDSINELFPIGTR----------LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + ++ P R L + I + FD + F+ A+++YE IV +F Sbjct: 62 APMAPNADVVPPSDRWKGIAEPDSELEHGLNAIAQNDSSFDAQHFITGAKSAYEMIVMAF 121 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 G ++ L+ S VY+ F+ ++ R+ N+ V++ V I+ ++I+A + + T +T+ Sbjct: 122 ANGDRRSLRDLLSSEVYESFDAAIKDREKNDLKVETRFVSIEKAELISAELRDRTAMLTL 181 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + V Q ISA+ DK ++ P+ + D+WTF R+ +PNW L+ T G Sbjct: 182 KFVSQMISATRDKTGAVVDGSPDKVVDITDVWTFARDTSSRDPNWKLVGTGSG 234 >gi|319898295|ref|YP_004158388.1| hypothetical protein BARCL_0116 [Bartonella clarridgeiae 73] gi|319402259|emb|CBI75797.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 230 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 115/208 (55%), Gaps = 8/208 (3%) Query: 28 RGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITL--GKGKKKDNLDSINELFPIG 81 R VLGK+ G EKP +SG+ + D I++L +K + I+ + P G Sbjct: 22 RNVLGKRIGFEKPPFDSYSGYPKKQIEVETTD--NIVSLPDQSSSQKSDFSEIDAIAPEG 79 Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 + LN +R I F P+ F+N + YE I+ +F +G +++ + S V++ F + Sbjct: 80 SELNVSLRTIRQFDPSFSPRFFMNGVQIVYEMIMTAFAQGDRVKLKEHLSSDVFESFCAA 139 Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201 + R+ N + ++ + VGI+ ++ I A +++ ++T+RIV + ISA+Y++ I +PE Sbjct: 140 IEQREKNNERIQFTFVGINRIEFIAAEMQKKEAFLTVRIVSEMISATYNEQEECIDGNPE 199 Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTK 229 ++ DIWTFVRN +PNW L +T+ Sbjct: 200 AIIEIRDIWTFVRNTTSQSPNWKLFATE 227 >gi|209883544|ref|YP_002287401.1| import inner membrane translocase, subunit Tim44 [Oligotropha carboxidovorans OM5] gi|209871740|gb|ACI91536.1| import inner membrane translocase, subunit Tim44 [Oligotropha carboxidovorans OM5] Length = 234 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 114/232 (49%), Gaps = 10/232 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 D ++F + F+FL+LR VLG++TG+E+P + S D + G + Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRITRDMARSGNDNNVVKMPGTTIDQT 61 Query: 70 NLDSINELFPIGTR----------LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 L + P R L + ++ + F+ + F++ A+++YE IV +F Sbjct: 62 PLAPAADPIPAQDRWKGIAEPDTPLATGLDEVAAADPSFNAQHFVSGAKSAYEMIVQAFA 121 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 G ++ L+ + VY F + R+ + V++ ID +++A + + ++T+R Sbjct: 122 SGDRRMLKDLLSAEVYDGFEAVIKGREQRGEKVETRFASIDKAALVSAGVRDRIAHLTVR 181 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 V Q I+ + DKD +I +PE V D+WTF R++ +PNW L+ T+ G Sbjct: 182 FVSQMITVTRDKDGAVIDGNPEKLTDVTDVWTFSRDVSSRDPNWKLVGTESG 233 >gi|39933380|ref|NP_945656.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris CGA009] gi|39653005|emb|CAE25747.1| conserved unknown protein [Rhodopseudomonas palustris CGA009] Length = 289 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 119/233 (51%), Gaps = 11/233 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERGIITLGKGKKK 68 D ++F + F+FL+LR VLG++TG+E+P F + + K+D + G + Sbjct: 56 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDNNVVSMPGTVIDQ 115 Query: 69 DNLDSINELFPIGTR----------LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + ++ P R L + I + FD + F+ A+++YE IV +F Sbjct: 116 APMAPNADVVPPSDRWKGIAEPDSELEHGLNAIAQNDSSFDAQHFITGAKSAYEMIVMAF 175 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 G ++ L+ S VY+ F+ ++ R+ N+ V++ V I+ ++I+A + + T +T+ Sbjct: 176 ANGDRRSLRDLLSSEVYESFDAAIKDREKNDLKVETRFVSIEKAELISAELRDRTAMLTL 235 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + V Q ISA+ DK ++ P+ + D+WTF R+ +PNW L+ T G Sbjct: 236 KFVSQMISATRDKTGAVVDGSPDKVVDITDVWTFARDTSSRDPNWKLVGTGSG 288 >gi|299133204|ref|ZP_07026399.1| import inner membrane translocase subunit Tim44 [Afipia sp. 1NLS2] gi|298593341|gb|EFI53541.1| import inner membrane translocase subunit Tim44 [Afipia sp. 1NLS2] Length = 234 Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 116/235 (49%), Gaps = 14/235 (5%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 D ++F + F+FL+LR VLG++TG+E+P + + D + G + Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPYDRVTRDVAPTGNDNNVVRMPGTAVDQA 61 Query: 70 NLDSINELFPIGTR------------LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117 L + P+ R L + + + F+ + F++ A+++YE IV + Sbjct: 62 TLAPSAD--PVSPRERWKGIAAPDSELASGLDQVAAADPSFNAQHFISGAKSAYEMIVLA 119 Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 F G ++ L+ S VY F + R+ + V++ ID ++++A + + ++T Sbjct: 120 FANGDRRTLKDLLSSDVYDGFEAVIKGREQQGEKVETKFASIDKAELVSAGVRDKLAHLT 179 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +R V Q I+A+ DKD +I +PE V D+WTF R++ +PNW L+ T+ G Sbjct: 180 VRFVSQMITATRDKDGAVIDGNPEKLTDVTDVWTFSRDVSSRDPNWKLVGTESGH 234 >gi|154245991|ref|YP_001416949.1| import inner membrane translocase subunit Tim44 [Xanthobacter autotrophicus Py2] gi|154160076|gb|ABS67292.1| import inner membrane translocase subunit Tim44 [Xanthobacter autotrophicus Py2] Length = 250 Score = 114 bits (286), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 116/234 (49%), Gaps = 11/234 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKR--DERGIITLGKGKK 67 D ++F + F+F++LR VLG++TG E+P +S + ++ + + Sbjct: 17 DIYTIIFLALAVFIFVRLRSVLGQRTGRERPPYDPYSRDTARPPQPASDKVVPLPERPVS 76 Query: 68 KDNLDSINELFPI---------GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 ++E P G+ + +I + DFD + FL AR +YE IV +F Sbjct: 77 PPAASPVDEAPPAYRWEGVAQEGSATAAALDEIARIEPDFDARHFLTGARAAYEMIVTAF 136 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 G A++ L+ VY F +++ R+S + ++S V ++ ++ + ++ + + +T+ Sbjct: 137 AAGDRRALKDLLAKDVYDGFVSAIADRESRRETMESRFVAVEQAELQDVTVRDRSAQLTV 196 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 R V + IS + D ++ P+ V D+WTF R++ +PNW L++T+ + Sbjct: 197 RFVSKLISVTRGPDGAVVDGSPDTVADVTDVWTFARDLGTRDPNWKLVATEAAQ 250 >gi|158426224|ref|YP_001527516.1| mitochondrial import inner membrane translocase [Azorhizobium caulinodans ORS 571] gi|158333113|dbj|BAF90598.1| mitochondrial import inner membrane translocase [Azorhizobium caulinodans ORS 571] Length = 279 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 122/237 (51%), Gaps = 16/237 (6%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL----GKG 65 D ++F + F+F++LR VLG++TG E+P F+ + + + +++L G Sbjct: 45 DIYTIIFLALAVFIFVRLRSVLGQRTGKERPPYDPFTPRPPAAPSSD-NVVSLPERVGDA 103 Query: 66 KKKDNLDSINELFP----------IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115 ++ +++ P G+ L + + I ++ DFD K F+ A+++YE IV Sbjct: 104 PQRPTA-PVSQPLPGTFRWKGVTEEGSPLAEALDQIAAIEPDFDAKHFVEGAKSAYEMIV 162 Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY 175 +F G ++ L+ V+ F ++S R+ + ++S V I+ +II AS+ T Sbjct: 163 LAFAAGDRRTLKDLLSKDVFDGFVAAISEREGRGETMESRFVAIEKAEIIEASVRGRTGQ 222 Query: 176 ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +T+R V + ISA+ +D ++ + V D+WTF R + +PNW L++T+ + Sbjct: 223 VTLRFVSKIISATRSRDGAVVDGSADTVADVTDVWTFARELGARDPNWKLVATEAAQ 279 >gi|304392739|ref|ZP_07374679.1| import inner membrane translocase, subunit Tim44 [Ahrensia sp. R2A130] gi|303295369|gb|EFL89729.1| import inner membrane translocase, subunit Tim44 [Ahrensia sp. R2A130] Length = 230 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 14/230 (6%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 D LL F+F +LR VLG + G EKP ++ ++TL K+ + Sbjct: 2 DLFTLLPLLAAVFLFWKLRSVLGTRNGIEKPPYDPYTND---PNEAADNVVTLPGAKRAN 58 Query: 70 NLDS-----------INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 D+ I +L L + + I S FDP++FL R +YE IV F Sbjct: 59 APDAEEDAGEAARKRIGKLAGKDKSLERGLLAIHSRDPGFDPEEFLQGGRMAYEMIVTGF 118 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 +G +E L+ VY+ F + R + V +S VGID I A + + IT+ Sbjct: 119 ADGDKRTLENLLSREVYESFATVIDERSERGEKVNASFVGIDKAVIEGAEVLRDEAQITV 178 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 R V + ISA+ D + +I D + +V D+WTF R + +PNW L++T Sbjct: 179 RFVSEMISATLDSSDEVIEGDLQEVAEVTDVWTFARPVKSRDPNWKLVAT 228 >gi|83313642|ref|YP_423906.1| hypothetical protein amb4543 [Magnetospirillum magneticum AMB-1] gi|82948483|dbj|BAE53347.1| Uncharacterized protein [Magnetospirillum magneticum AMB-1] Length = 281 Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 115/220 (52%), Gaps = 11/220 (5%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 I+ FA + F+ L+LR VLGK+TG E+P ++ + ++ L ++ Sbjct: 72 IVFFAMVAAFLVLRLRSVLGKRTGAERP-----PEQWTPPEAAADNVVDLQSVRR----- 121 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 S +E P T + + + I + FD FL A+ ++E IV +F G ++ L+ Sbjct: 122 SASEP-PAETPMGQGLAAIRAADRGFDLDGFLGGAKAAFEMIVIAFAHGDKATLQPLLAP 180 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 VY+ F+D++ R+ + + +++ LVGI +++ A ++ +TIR V + ++A D Sbjct: 181 DVYRHFSDAIDARRQHGETLQTELVGIRTAELVEAGMDGRFAALTIRFVSEQVNALRDAK 240 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ++ +PE VID+WTF R+ ++PNW L +T E Sbjct: 241 GEVVEGNPERVIDVIDLWTFRRDTRSADPNWALAATHTPE 280 >gi|163850987|ref|YP_001639030.1| import inner membrane translocase subunit Tim44 [Methylobacterium extorquens PA1] gi|218529814|ref|YP_002420630.1| import inner membrane translocase subunit Tim44 [Methylobacterium chloromethanicum CM4] gi|240138118|ref|YP_002962590.1| hypothetical protein MexAM1_META1p1451 [Methylobacterium extorquens AM1] gi|254560680|ref|YP_003067775.1| hypothetical protein METDI2225 [Methylobacterium extorquens DM4] gi|163662592|gb|ABY29959.1| import inner membrane translocase subunit Tim44 [Methylobacterium extorquens PA1] gi|218522117|gb|ACK82702.1| import inner membrane translocase subunit Tim44 [Methylobacterium chloromethanicum CM4] gi|240008087|gb|ACS39313.1| conserved hypothetical protein, putative membrane protein [Methylobacterium extorquens AM1] gi|254267958|emb|CAX23826.1| conserved hypothetical protein, putative membrane protein [Methylobacterium extorquens DM4] Length = 239 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 110/240 (45%), Gaps = 17/240 (7%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEK------------PFSGFFSGKYV--F 51 DS D L+F + FV +LR VLG+KTG E+ P +G G V Sbjct: 2 QDSFDATTLIFLALAVFVIWRLRSVLGQKTGTERSPFRPVERNRTEPPAGRGEGDNVVRL 61 Query: 52 SKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY 111 D + I E G+ + + + +V + F+P+ FL A+ +Y Sbjct: 62 PGADRSPAGAAAVQTAARDWRGIAE---PGSAVARGLEQVVQLEPAFEPRAFLEGAKGAY 118 Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171 E IV +F +G + L+ V + F ++S R+ + +++ + ID +I ++ Sbjct: 119 ETIVTAFAKGDRKTLRALLSREVCEGFERAISEREKRNETAETTFISIDKAEIAAVEVKN 178 Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 IT+R + I+A+ D D +I + E +V D+WTF R + +PNW L++T G Sbjct: 179 RAAQITVRFLSNLITATRDADGKVIDGNAETGVEVPDVWTFARTLGSRDPNWQLVATDAG 238 >gi|170750111|ref|YP_001756371.1| import inner membrane translocase subunit Tim44 [Methylobacterium radiotolerans JCM 2831] gi|170656633|gb|ACB25688.1| import inner membrane translocase subunit Tim44 [Methylobacterium radiotolerans JCM 2831] Length = 237 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 59/235 (25%), Positives = 114/235 (48%), Gaps = 9/235 (3%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEK-PFSGFFSGKYVFSKR-DERGIITLG 63 DS D ++F + FV +LR VLG+KTG E+ PF + R D ++ L Sbjct: 2 QDSFDVTTIIFLALAVFVIWRLRSVLGQKTGAERSPFKPVDRSRTEPQARSDGDNVVRLP 61 Query: 64 KGKKKDNLDSINE-------LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116 + + G+ + + + + FDP+ F+ A+++YEAI+ Sbjct: 62 GADRVQAAPPPAAAPRDWRGIAEPGSEVARGLEACIQAEPSFDPRAFIEGAKSAYEAIMI 121 Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F +G + L+ V + F +++ R+ N + ++++ V ID +I+ + ++ Sbjct: 122 AFAKGDRKTLRGLLSKEVGEAFERAIAERERNRQTLETTFVSIDKAEIVAVEVRNRVAHV 181 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 T+R + I+A+ + D ++ E +V D+WTF R + +PNW L++T+ G Sbjct: 182 TVRFLSNLITATRNADGKVVDGSAETVVEVPDVWTFARTLGSRDPNWQLVATEAG 236 >gi|188580934|ref|YP_001924379.1| import inner membrane translocase subunit Tim44 [Methylobacterium populi BJ001] gi|179344432|gb|ACB79844.1| import inner membrane translocase subunit Tim44 [Methylobacterium populi BJ001] Length = 242 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 108/240 (45%), Gaps = 14/240 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEK------------PFSGFFSGKYV--F 51 DS D L+F + FV +LR VLG+KTG E+ P +G G V Sbjct: 2 QDSFDATTLIFLALAVFVIWRLRSVLGQKTGTERSPFRPVERNRTEPPAGRGEGDNVVRL 61 Query: 52 SKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY 111 D + + + + + + +V V FDP+ FL A+ +Y Sbjct: 62 PGADRAQAGAQAGTATQTATRDWRGIAEPNSAVARGLEQVVQVEPGFDPRAFLEGAKGAY 121 Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171 E IV +F +G + L+ V + F ++S R+ + +++ + ID +I ++ Sbjct: 122 ETIVTAFAKGDRKTLRALLSREVCEGFERAISEREKRRETAETTFISIDKAEIAAVEVKN 181 Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 IT+R + I+A+ D D +I + E +V D+WTF R + +PNW L++T G Sbjct: 182 RAAQITVRFLSNLITATRDADGKVIDGNAETGVEVPDVWTFARTLGSRDPNWQLVATDAG 241 >gi|46201691|ref|ZP_00054533.2| COG4395: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 219 Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 113/217 (52%), Gaps = 11/217 (5%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 I+ FA + F+ L+LR VLGK+TG E+P K+ + ++ L ++ Sbjct: 10 IVFFAMVAAFLVLRLRSVLGKRTGTERP-----PEKWSPVEAPADNVVDLQSVRR----- 59 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 S +E P T L + + I + FD FL A+ ++E IV +F G ++ L+ Sbjct: 60 SASEP-PAETPLGQGLAAIRAADRGFDLDGFLGGAKAAFEMIVIAFAHGDKATLQPLLAP 118 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 VY+ F++++ R+ + + +++ LVGI +++ A ++ +TI+ V + ++A D Sbjct: 119 DVYRHFSEAIDARRQHGETLQTELVGIRSAELVEAGMDGRFAALTIKFVSEQVNALRDAK 178 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 ++ +PE VID+WTF R+ +PNW L +T Sbjct: 179 GEVVEGNPERVIDVIDLWTFRRDTRSPDPNWALTATH 215 >gi|217977326|ref|YP_002361473.1| import inner membrane translocase subunit Tim44 [Methylocella silvestris BL2] gi|217502702|gb|ACK50111.1| import inner membrane translocase subunit Tim44 [Methylocella silvestris BL2] Length = 239 Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 112/230 (48%), Gaps = 11/230 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERG---IITL--- 62 D ++FA + FV +LR +LG +TG EKP + F +G+ +KR G +I L Sbjct: 6 DVSTIIFALLAAFVVWKLRSILGARTGTEKPPRNPFIAGEPSAAKRPGEGEGKVIPLPGA 65 Query: 63 -GKGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + D + P G++ + I + F+ K FL A+ +YE IV F Sbjct: 66 SAPIAQAAAADPSSRWKPHAEPGSKAWAGLDAIAAADRSFEIKSFLEGAKTAYEMIVIGF 125 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 +G ++ L+D VY F +L+ R+ +++S V ID+ I +A + I + Sbjct: 126 ADGDRPMLQNLLDKSVYDSFVTALTEREKRGDKIETSFVAIDNGAIADAELNGRMAEIAV 185 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 R Q I+A+ + +I +PE ++ D W F R++ +PNW LIST Sbjct: 186 RFSAQIITATRNAAGTVIEGNPEQVVEINDTWRFARDVGARDPNWRLIST 235 >gi|260429391|ref|ZP_05783368.1| transporter, Tim44 family [Citreicella sp. SE45] gi|260420014|gb|EEX13267.1| transporter, Tim44 family [Citreicella sp. SE45] Length = 219 Score = 104 bits (260), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 111/220 (50%), Gaps = 14/220 (6%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER--GIITLGKGKKKDN 70 +L+ A I F+ L+LR VLG + G EKP + +KRD+R + G D Sbjct: 8 LLVLAGIAIFLILRLRSVLGTRDGFEKPEA------PAPAKRDDRKRDFEVIEGGPDHDI 61 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 D + E P L K+ R + F+ +FL+ AR +YE I+ F G++ ++ + Sbjct: 62 TDHVPENSPAAEALAKMKR----IEPSFNVTEFLSGARGAYEMILMGFDNGEIEDLKPFL 117 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQFISAS 188 +Y+ F+D + R V++ VG+ ++ +++AS +E IT++ VG+ S Sbjct: 118 SDEIYETFSDVIEQRGQQGLTVEAEFVGVRELSLVDASFDETRQLAEITVKYVGELTSVV 177 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + ++ +P + D+WT+ RN+ +PNW L++T Sbjct: 178 KNAAGEIVEGNPRTVKRQKDVWTYARNMGTDDPNWQLVAT 217 >gi|182680015|ref|YP_001834161.1| import inner membrane translocase subunit Tim44 [Beijerinckia indica subsp. indica ATCC 9039] gi|182635898|gb|ACB96672.1| import inner membrane translocase subunit Tim44 [Beijerinckia indica subsp. indica ATCC 9039] Length = 260 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 108/242 (44%), Gaps = 20/242 (8%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKY--VFSKRDE----------- 56 D I++FA + F+ +LR VLG + GNE+P G++ +FS + + Sbjct: 8 DMSIVIFALLAAFLIWKLRSVLGTRQGNEEPRDNSVPGQWPSLFSPKSQDPSQANKNGAP 67 Query: 57 -------RGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN 109 R G + + + + + I F P FL AR+ Sbjct: 68 GQPTFPNRPSPAGASGAPAEAGRNWSAFVEPNSPAAAGLEAIAKADPAFAPGPFLEGARH 127 Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 +YE IV++F EG+ A+ L+ VY F +++ R+S V+ + V +D KI A++ Sbjct: 128 AYEMIVNAFAEGQRSALANLLVRDVYAGFEAAITERESQGHKVELTFVSLDAAKIEEAAL 187 Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 IT+R + I + D ++ P+ V D+WTF R I +PNW L +TK Sbjct: 188 FHQIAEITLRYKAKMIKVTRDAQGAVVEGSPDHVVDVDDLWTFERMIGSQDPNWKLAATK 247 Query: 230 LG 231 G Sbjct: 248 TG 249 >gi|170739669|ref|YP_001768324.1| import inner membrane translocase subunit Tim44 [Methylobacterium sp. 4-46] gi|168193943|gb|ACA15890.1| import inner membrane translocase subunit Tim44 [Methylobacterium sp. 4-46] Length = 238 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 116/240 (48%), Gaps = 17/240 (7%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKP-FSGFFSGKY-VFSKRDERGIITLG 63 DS D L+F + FV +LR VLG+KTG+E+P F+ + E ++ L Sbjct: 3 QDSLDLTTLIFLGLAVFVIWKLRAVLGQKTGHERPPFNPLVRRREEPPPAAREDNVVRLP 62 Query: 64 KGKKKD----------NLDSINELFPIGTR-LNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 G + N + E R L+ V++ FDP+ F + A+ +YE Sbjct: 63 AGGDRTAAAPVATVPRNWKGVVEPNSAAARGLDLVLQQ----EPGFDPRAFTDGAKIAYE 118 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 IV +F +G ++ L+ V + F ++ R+ ++V+++ V ID +I+ + Sbjct: 119 TIVMAFAKGDRRTLKSLLSREVAEGFERAIQARERAGQSVETTFVSIDRAEIVGVDLRNR 178 Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 IT+R + + I+A+ + ++ P+ V D+WTF R + +PNW L++T+ G+ Sbjct: 179 VAQITVRYLSKLITATRNAQGAVVDGSPDTVVDVTDVWTFARTLGSRDPNWQLVATEAGQ 238 >gi|126724535|ref|ZP_01740378.1| import inner membrane translocase, subunit Tim44 [Rhodobacterales bacterium HTCC2150] gi|126705699|gb|EBA04789.1| import inner membrane translocase, subunit Tim44 [Rhodobacterales bacterium HTCC2150] Length = 236 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 117/228 (51%), Gaps = 10/228 (4%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F KM S +L+ A I F+ L+L+ VLG + G EKP + G+ S R + ++ Sbjct: 15 FTKMGSSMIQLLVLAGIAVFLILRLKNVLGTREGFEKPRAP--QGQAQQSNRPQLEVVEN 72 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 G + I E I + + +I + +F ++FL A+ +YE I+ +F GK Sbjct: 73 GPDQ------DIAEYVEIDSEAGMALAEIKAQDRNFTVQEFLGGAKGAYEMILIAFEGGK 126 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRI 180 + +E + V + F + ++ R+ V ++ +G+ +M + +A+++ N +T++ Sbjct: 127 LSDVEPFLSEEVMESFVEVVADREDQGLTVTANFIGLREMAVHDATLDPITNIAEVTVKF 186 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 VG+ S ++ + ++ D + + DIWTF R++ NPNW L++T Sbjct: 187 VGEMTSVVHNAEGEVVEGDEKTIKRQKDIWTFARDLGDDNPNWQLVAT 234 >gi|99082695|ref|YP_614849.1| import inner membrane translocase, subunit Tim44 [Ruegeria sp. TM1040] gi|99038975|gb|ABF65587.1| import inner membrane translocase subunit Tim44 [Ruegeria sp. TM1040] Length = 218 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 117/225 (52%), Gaps = 11/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EKP S + ++ +R + Sbjct: 1 MESPLIELLVLAGIAVFLILRLKSVLGTREGFEKP--PLASSE---TRAPQRKFEVIEGS 55 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D + ++E G+ +K + D+ + F +F+ AR +YE I+ F G++ Sbjct: 56 PDDDIIAYVDE----GSPQSKALSDMKRSDSSFQVAEFVQGARGAYEMILMGFETGELDG 111 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQ 183 I+ + ++Q F D++S R+ +++ +G+ + II+A+ + +T IT+R VG+ Sbjct: 112 IQPFISDDIFQSFVDAVSAREDQGLTIEAEFIGVRETSIIDATFDTATSTAEITVRFVGE 171 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 SA ++ ++ DP+ + D WTF R + +PNW+L++T Sbjct: 172 LTSAVRNRAGEIVEGDPKAVKRQKDTWTFSRQMGTGDPNWLLVAT 216 >gi|260431955|ref|ZP_05785926.1| transporter, Tim44 family [Silicibacter lacuscaerulensis ITI-1157] gi|260415783|gb|EEX09042.1| transporter, Tim44 family [Silicibacter lacuscaerulensis ITI-1157] Length = 219 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 112/225 (49%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EKP + + + R + G Sbjct: 1 MNSPLIQLLVLAGIAIFLILRLKSVLGTREGFEKPPVP----QQPAASKSRRDFEVIDGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D D + E I L + R V F +FL AR++YE IV F G + Sbjct: 57 PDRDITDHVPEDSEIAQTLAAMKR----VEPSFSVSEFLQGARSAYEMIVMGFERGNLDE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 I+ + V++ F ++ R+ ++++ +G+ +M +++A +++T IT+R VG+ Sbjct: 113 IQPFLSEEVFETFVSVVAEREDKGLSIEAEFIGVREMALVDAQFDKDTNRAEITVRFVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S D+D ++ +P + D WTF R + +PNW+L++T Sbjct: 173 LTSVVRDRDGNIVEGNPNTIKRQKDSWTFARVMGADDPNWLLVAT 217 >gi|220921009|ref|YP_002496310.1| import inner membrane translocase subunit Tim44 [Methylobacterium nodulans ORS 2060] gi|219945615|gb|ACL56007.1| import inner membrane translocase subunit Tim44 [Methylobacterium nodulans ORS 2060] Length = 241 Score = 101 bits (251), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 113/244 (46%), Gaps = 21/244 (8%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKP-FSGFFSGKYVFSKRDERG---IIT 61 DS D L+F + FV +LR VLG+KTGNE+P F+ + G ++ Sbjct: 2 QDSLDLTTLIFLGLAVFVIWKLRSVLGQKTGNERPPFNPLLRRREEPPPAPREGGDNVVR 61 Query: 62 LGKGKKKD------------NLDSINEL-FPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR 108 L N + E P L+ V++ S FDP+ F + A+ Sbjct: 62 LPGAGADRGAAAPVAATVPRNWKGVVEPNSPAARGLDLVLQQEPS----FDPRAFTDGAK 117 Query: 109 NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS 168 +YE IV +F +G ++ L+ V F ++ R+ + V+++ V ID +I+ Sbjct: 118 VAYETIVMAFAKGDRKTLKSLLSREVADGFERAIQARERAGQTVETTFVSIDRAEIVGVD 177 Query: 169 IEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + IT+R + + I+A+ + ++ P+ V D+WTF R + +PNW L++T Sbjct: 178 VRNRVAQITVRFLSKLITATRNPQGAVVDGSPDTVVDVTDVWTFARTLGSRDPNWQLVAT 237 Query: 229 KLGE 232 + G+ Sbjct: 238 EAGQ 241 >gi|312115344|ref|YP_004012940.1| import inner membrane translocase subunit Tim44 [Rhodomicrobium vannielii ATCC 17100] gi|311220473|gb|ADP71841.1| import inner membrane translocase subunit Tim44 [Rhodomicrobium vannielii ATCC 17100] Length = 233 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 115/224 (51%), Gaps = 12/224 (5%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK-----GKK 67 ILL A + +FL+LR VLG++TG+E+ ++ + RD ++ L + G Sbjct: 11 ILLLA-VAVAIFLRLRSVLGRRTGDEETRLDNYA-RDAAPTRD--NVVPLPRAEPRPGGA 66 Query: 68 KDNLDSINELF---PIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 S++E P + + +R I + FD F+N A+ +YE+I+ ++ +G Sbjct: 67 PSAGPSVDERLGNVPADSAVRAPLRQIATSDPSFDTASFVNGAKIAYESIITAYAKGDRE 126 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 + L+ V+ FN ++ R+++ + V+ +GI +I+ A + + +R V Sbjct: 127 TLRHLLAPEVFDSFNVVINDREASGETVEFHFIGISSSEIVEAQLLGRVAQVKVRFVSDL 186 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 ++A+ DK ++ D + +V DIWTF R++ NPNW L++T Sbjct: 187 VTATRDKHGEVVDGDDKAVRQVTDIWTFSRDVSSPNPNWQLVAT 230 >gi|146278709|ref|YP_001168868.1| import inner membrane translocase, subunit Tim44 [Rhodobacter sphaeroides ATCC 17025] gi|145556950|gb|ABP71563.1| import inner membrane translocase, subunit Tim44 [Rhodobacter sphaeroides ATCC 17025] Length = 219 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 115/225 (51%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M S +L+ A I F+ ++L+ VLG + G EKP + R R + G Sbjct: 1 MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPPVPLEDPR----PRPRREFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D +D + + G+ K + + F +FL AR +YE IV +F +G++ Sbjct: 57 PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLTGARGAYEMIVMAFEKGELEQ 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQ 183 I + + V++ F D+++ R++ +V+++ +G+ ++ I AS E ++ I +R VG+ Sbjct: 113 IRPFLSAEVFESFEDAVNAREAEGLSVEANFLGLREIDIHEASFERDSRIGQIAVRFVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S +++ ++ P + D+WTF R++ ++PNW L++T Sbjct: 173 LTSVVRNREGQVVEGSPTEIKRQRDVWTFERHMGANDPNWQLVAT 217 >gi|77464817|ref|YP_354321.1| hypothetical protein RSP_1239 [Rhodobacter sphaeroides 2.4.1] gi|77389235|gb|ABA80420.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1] Length = 219 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 112/225 (49%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M S +L+ A I F+ ++L+ VLG + G EKP K R R + G Sbjct: 1 MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPAVPLEDPK----PRTRRDFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D +D + + G+ K + + F +FL AR +YE IV +F +G++ Sbjct: 57 PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLTGARGAYEMIVMAFEKGELEQ 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQ 183 I + S V++ F +++ R++ +V+++ +G+ ++ I AS + +T + +R VG+ Sbjct: 113 IRPFLSSDVFESFEEAVKAREAEGLSVEATFLGLREIDIHEASFDRDTRVGQVAVRFVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S D+ +I P + D+WTF R + ++PNW L++T Sbjct: 173 LTSVVRDRTGQVIEGSPTEVKRQRDVWTFERRMGANDPNWQLVAT 217 >gi|259417909|ref|ZP_05741828.1| import inner membrane translocase, subunit Tim44 [Silicibacter sp. TrichCH4B] gi|259346815|gb|EEW58629.1| import inner membrane translocase, subunit Tim44 [Silicibacter sp. TrichCH4B] Length = 218 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 119/226 (52%), Gaps = 13/226 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EKP + + + + +I +G Sbjct: 1 MESPLIELLVLAGIAVFLILRLKSVLGTREGFEKPP---LANNEAPAPQRKFEVI---EG 54 Query: 66 KKKDNLDS-INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 D++ + ++E G+ + + D+ + F +F+ AR +YE I+ F G++ Sbjct: 55 SPDDDIVAYVDE----GSPQAQALSDMKRADSSFQVAEFVQGARGAYEMILMGFETGELD 110 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVG 182 I+ + ++Q F D++S R+ +++ +G+ + I++A+ + +T +T+R VG Sbjct: 111 GIQPFISEEIFQSFVDAVSAREDQGLTIEAEFIGVRETTIVDATFDAATSTAEVTVRFVG 170 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + SA ++ ++ DP+ + D WTF R + +PNW+L++T Sbjct: 171 ELTSAVRNRAGEIVEGDPKAVKRQKDTWTFSRQMGTGDPNWLLVAT 216 >gi|144900161|emb|CAM77025.1| Mitochondrial import inner membrane translocase, subunit Tim44 [Magnetospirillum gryphiswaldense MSR-1] Length = 243 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 110/223 (49%), Gaps = 12/223 (5%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDE----RGIITLGKGKK- 67 I+ FA + F+ L+LR VLGK+TGNE+P ++ + +D+ +I L + ++ Sbjct: 10 IVFFAVVAVFLILRLRSVLGKRTGNEEP------PRWTRTPKDDGETADNVIDLTRARRP 63 Query: 68 -KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + D ++ L + I + F FL+ AR ++E IV +F G A+ Sbjct: 64 VEAEPDVTADVAATAGPLARGEAAIRARDPSFSNTGFLSGARMAFEMIVGAFAAGDKKAL 123 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 L+ +VY+ F D++ R + + + ++GI +II A + +T+R V + I+ Sbjct: 124 RPLLADQVYKPFCDAIDARARAGEELSTEIMGIKSAEIIEAIMVGTVAQVTVRFVSEQIN 183 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 D D ++ DP V D WTF R+ +PNW L +T+ Sbjct: 184 VIKDLDGRIVEGDPSRIVPVTDEWTFSRDTRSKDPNWHLSATR 226 >gi|84684638|ref|ZP_01012539.1| hypothetical protein 1099457000260_RB2654_13474 [Maritimibacter alkaliphilus HTCC2654] gi|84667617|gb|EAQ14086.1| hypothetical protein RB2654_13474 [Rhodobacterales bacterium HTCC2654] Length = 219 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 12/226 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII-TLGK 64 M S +++ A I F+ L+LR VLG + G EKP + V D RG + Sbjct: 1 MSSPIIQLIVLAAIAIFLILRLRDVLGTREGFEKPVVSRTESQRV----DNRGKFEVIEG 56 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 G D D + + I + + + F DFLN AR +YE I+ +F G++ Sbjct: 57 GPDTDITDHVEDPASI-----EALAKMKGAERSFAVGDFLNGARGAYEMILMAFEAGELD 111 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI--EENTVYITIRIVG 182 I+ + VY+ F + R+ + + ++ VG+ +MK++ A E ITIR +G Sbjct: 112 KIKPFLSDEVYESFATVVEQREKDGYKIDANFVGLREMKLVEAEFDDESREGEITIRFIG 171 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + S DK ++ +P + D+WTF R + NPNW L++T Sbjct: 172 EITSVVRDKSGEIVEGNPTEVKRQKDVWTFARIMGSENPNWQLVAT 217 >gi|114762187|ref|ZP_01441655.1| transporter, Tim44 family protein [Pelagibaca bermudensis HTCC2601] gi|114545211|gb|EAU48214.1| transporter, Tim44 family protein [Roseovarius sp. HTCC2601] Length = 219 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 14/220 (6%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDE--RGIITLGKGKKKDN 70 +L+ A I F+ L+LR VLG + G EKP S S+RD+ R + G D Sbjct: 8 LLVLAGIAIFLILRLRSVLGTRDGFEKPES------PSPSRRDDTARDFEVIEGGPDHDI 61 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 +D + E P L K+ R F +FL+ AR +YE I+ F G++ ++ + Sbjct: 62 IDHVPENSPAAEALAKMKR----AEPSFGVGEFLSGARGAYEMILMGFDNGEIEDLKPFL 117 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISAS 188 +Y+ F+D + R +++ VG+ ++ +++A+ + E IT++ VG+ S Sbjct: 118 SDEIYETFSDVIEQRAQQGLTIEAQFVGVRELSLVDATFDDTERLAEITVKYVGELTSVV 177 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + +I P + D+WT+ R + +PNW L++T Sbjct: 178 KNAAGEVIEGSPTAVKRQKDVWTYARRMGSDDPNWQLVAT 217 >gi|163797060|ref|ZP_02191015.1| hypothetical protein BAL199_11141 [alpha proteobacterium BAL199] gi|159177576|gb|EDP62129.1| hypothetical protein BAL199_11141 [alpha proteobacterium BAL199] Length = 222 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 115/220 (52%), Gaps = 4/220 (1%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 I+L A + FV +LR VLG++TG+E+ + F+ + ++ G I + +++D Sbjct: 6 IILLAMLAGFVIFKLRSVLGRRTGHERRPTDPFAES---PETNDNGNIVRLPDRSAESVD 62 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 ++ P G+ + + I FD + FL A++++ IV++F +G V + L+ Sbjct: 63 GSDDDVP-GSSMAAGIMQIKLADDGFDERQFLQGAKSAFAMIVEAFAKGDVDGLRPLLSR 121 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 +Y F ++ + + ++++V I ++ AS+E + +T+ V + + + D Sbjct: 122 ELYGGFASAIEACEKAGEIQETTIVTIRSADVVEASLENSVAKVTVEFVTEQVKVTRSSD 181 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +I DP+ + DIWTF R+I +PNW L++T++ E Sbjct: 182 GEVIDGDPDRIDILTDIWTFARDIGNRDPNWELVATRVPE 221 >gi|83942018|ref|ZP_00954480.1| transporter, Tim44 family protein [Sulfitobacter sp. EE-36] gi|83953067|ref|ZP_00961789.1| transporter, Tim44 family protein [Sulfitobacter sp. NAS-14.1] gi|83842035|gb|EAP81203.1| transporter, Tim44 family protein [Sulfitobacter sp. NAS-14.1] gi|83847838|gb|EAP85713.1| transporter, Tim44 family protein [Sulfitobacter sp. EE-36] Length = 219 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 22/231 (9%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG------I 59 M+S +L+ A I F+ L+L+ VLG +TG EKP S++ ER + Sbjct: 1 MNSPMIQLLVLAAIAVFLILRLKNVLGTRTGFEKPAE--------VSEKPERPSGPAFEV 52 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 I G +LD I + P G+ + ++ V F DFL AR +YE IV + Sbjct: 53 IEGGP-----DLD-ITDHAPEGSDTALALAEMKRVEPSFGVSDFLGGARGAYEMIVMGYE 106 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYIT 177 G + I+ + +Y+ F + ++ R+ V+S +GI +M++ NA++++ T +T Sbjct: 107 HGNLDEIKPFLSEDIYESFVEGVAAREDQGLTVESHFIGIREMELENATMDKTTNEAELT 166 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 IR V + S D+D ++ + D W F R + +PNW+L+ST Sbjct: 167 IRFVAELTSVVKDRDGEIVEGSTTEVNRQKDTWVFARVMGSDDPNWLLVST 217 >gi|126463660|ref|YP_001044774.1| import inner membrane translocase, subunit Tim44 [Rhodobacter sphaeroides ATCC 17029] gi|332559713|ref|ZP_08414035.1| import inner membrane translocase, subunit Tim44 [Rhodobacter sphaeroides WS8N] gi|126105324|gb|ABN78002.1| import inner membrane translocase, subunit Tim44 [Rhodobacter sphaeroides ATCC 17029] gi|332277425|gb|EGJ22740.1| import inner membrane translocase, subunit Tim44 [Rhodobacter sphaeroides WS8N] Length = 219 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M S +L+ A I F+ ++L+ VLG + G EKP K R R + G Sbjct: 1 MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPAVPLEDPK----PRTRRDFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D +D + + G+ K + + F +FL AR +YE IV +F +G++ Sbjct: 57 PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLTGARGAYEMIVMAFEKGELEQ 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQ 183 I + V++ F +++ R++ +V+++ +G+ ++ I AS + +T + +R VG+ Sbjct: 113 IRPFLSPDVFESFEEAVKAREAEGLSVEATFLGLREIDIHEASFDRDTRVGQVAVRFVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S D+ +I P + D+WTF R + ++PNW L++T Sbjct: 173 LTSVVRDRTGQVIEGSPTEVKRQRDVWTFERRMGANDPNWQLVAT 217 >gi|126730112|ref|ZP_01745924.1| transporter, Tim44 family protein [Sagittula stellata E-37] gi|126709492|gb|EBA08546.1| transporter, Tim44 family protein [Sagittula stellata E-37] Length = 219 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 10/218 (4%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 +L+ A I F+ L+LR VLG + G E+P S K S+R+ + G D D Sbjct: 8 LLVLAGIAVFLVLRLRSVLGTRDGFERPTPAEKS-KETTSRRE---FEVIEGGPDHDITD 63 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + E GT + + V F +FL AR +YE I+ F G + ++ + Sbjct: 64 HVAE----GTDAANALAAMKRVEPSFSVSEFLGGARGAYEMILMGFERGDIEGLKPFLAD 119 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISASYD 190 V++ F++ + R+S + + VG+ +M + AS + +T IT+R VG+ S + Sbjct: 120 DVFETFSEVVEARESEGLTIDADFVGVREMTLAGASFDPDTREAEITVRYVGELTSVVKN 179 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + ++ P + DIWT+ R + +PNW L++T Sbjct: 180 AEGEIVEGSPTAVKRQKDIWTYARTMGADDPNWQLVAT 217 >gi|209966267|ref|YP_002299182.1| hypothetical protein RC1_3002 [Rhodospirillum centenum SW] gi|209959733|gb|ACJ00370.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 230 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 108/224 (48%), Gaps = 6/224 (2%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEK----PFSGFFSGKYVFSKRDERGIITLGKGK 66 F IL+F + F+ +LR VLG++ G E+ PF+ + + ++ L Sbjct: 8 FDILIFGMVAAFLVYRLRSVLGRRHGEERQRPNPFTPPPKAGQAPAPAESDNVVPLPDRG 67 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + E PI L + +R I + F+ K FL A+ ++E IV +F +G + Sbjct: 68 RPPEAPLPVETGPIS--LEEGLRQIRAADPTFNEKHFLQGAKAAFEMIVKAFADGDTPTL 125 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 L+ VY F +++ R++ + ++ + + + + A ++ +TIR + + Sbjct: 126 RPLLADDVYDGFAEAIRKRQAAGETRETRITAFESVDLKEARMDGRHAMVTIRFITHQVD 185 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + + ++ DP+ +V+DIWTF RN +PNW+L+ T++ Sbjct: 186 CTVNAAGDVVDGDPDEAIEVVDIWTFSRNTRSPDPNWLLVETRV 229 >gi|89067415|ref|ZP_01154928.1| transporter, Tim44 family protein [Oceanicola granulosus HTCC2516] gi|89046984|gb|EAR53038.1| transporter, Tim44 family protein [Oceanicola granulosus HTCC2516] Length = 220 Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 9/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+LR VLG + G EKP S + +R + +I G Sbjct: 1 MNSPIIQLLVLAGIAVFLILRLRSVLGTREGFEKP-PVTESDRSALRRRPDLEVIE--GG 57 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D +D ++ G+ + + F DFL AR +YE I+ +F G + Sbjct: 58 PDRDIVDHVD----AGSDAADALARMKRAEPAFGVGDFLGGARGAYEMILMAFENGDLSE 113 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 ++ + VY+ F+ + R+ +V+++ VG+ ++ + +A +E T +T+R G+ Sbjct: 114 VKDFLGPEVYEAFSQVIEERRERGLHVEATFVGLSEITLKDAEFDETTREAELTVRFTGE 173 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S D ++ P + D+WTF R + ++PNW+L++T Sbjct: 174 ITSVVRDAGGDIVEGSPTEIKRQRDVWTFARTMGANDPNWILVAT 218 >gi|84501205|ref|ZP_00999410.1| transporter, Tim44 family protein [Oceanicola batsensis HTCC2597] gi|84390496|gb|EAQ02984.1| transporter, Tim44 family protein [Oceanicola batsensis HTCC2597] Length = 220 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 115/227 (50%), Gaps = 13/227 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEK-PFSGFFSGKYVFSKRDERG-IITLG 63 M+S +L+ A I F+ L+LR VLG + G EK P + SG S + RG + Sbjct: 1 MNSPIIQLLVLAGIAVFLILRLRSVLGTREGFEKTPVT--RSGP---SNSEARGNFEVIE 55 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 G D +D + E P L ++ + + F +FL AR +YE I+ F G++ Sbjct: 56 GGPDPDIVDHVPEDSPAAGALARMKQ----LEPSFSVGEFLGGARGAYEMILMGFERGEM 111 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIV 181 I+ + VY+ F ++ R + +++ VG+ ++++++A +++ + +T+R V Sbjct: 112 AEIKPFLSEEVYESFAHVVNERDAKGLTIEADFVGVKELQLVDAELDDTSREGELTVRFV 171 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 GQ A D+ +I DP+ D+WTF R + +PNW L++T Sbjct: 172 GQLTFAVRDRAGEVIEGDPKSIKTQRDVWTFARKMGSDDPNWQLVAT 218 >gi|221640736|ref|YP_002526998.1| Import inner membrane translocase subunit Tim44 [Rhodobacter sphaeroides KD131] gi|221161517|gb|ACM02497.1| Import inner membrane translocase, subunit Tim44 precursor [Rhodobacter sphaeroides KD131] Length = 219 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M S +L+ A I F+ ++L+ VLG + G EKP K R R + G Sbjct: 1 MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPAVPLEDPK----PRTRRDFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D +D + + G+ K + + F +FL AR +YE IV +F +G++ Sbjct: 57 PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLIGARGAYEMIVMAFEKGELEQ 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQ 183 I + V++ F +++ R++ +V+++ +G+ ++ I AS + +T + +R VG+ Sbjct: 113 IRPFLSPDVFESFEEAVKAREAEGLSVEATFLGLREIDIHEASFDRDTRVGQVAVRFVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S D+ +I P + D+WTF R + ++PNW L++T Sbjct: 173 LTSVVRDRTGQVIEGSPTEVKRQRDVWTFERRMGANDPNWQLVAT 217 >gi|154251701|ref|YP_001412525.1| import inner membrane translocase subunit Tim44 [Parvibaculum lavamentivorans DS-1] gi|154155651|gb|ABS62868.1| import inner membrane translocase subunit Tim44 [Parvibaculum lavamentivorans DS-1] Length = 247 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 109/228 (47%), Gaps = 25/228 (10%) Query: 23 VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN---------LDS 73 VFL+LR VLG++TG+E+P +S + D+ ++TL K + D +D+ Sbjct: 19 VFLKLRSVLGRRTGHERPPYDPYS-ENPAPGNDK--VVTLPKRGRTDAPASGARDRVIDA 75 Query: 74 INELFP-------------IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 + F G+ L + I FD + FL+ AR +YE IV +F Sbjct: 76 AGDPFANAGARFRWRGVTEEGSPLAGALDAIADADRTFDTESFLSGARMAYEMIVTAFAA 135 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 G ++ L+ VY F ++S R+ + S +GID I S++ +T+ Sbjct: 136 GDRATLKPLLSDDVYASFEGAISAREKAGLQIDQSFIGIDKAAITGGSLDGTRARLTVSF 195 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + S++ + D +++ DP ++ D+WTF R++ +PNW L++T Sbjct: 196 RSELTSSTKNSDGVVVEGDPVTVREITDVWTFERDLRNRDPNWKLVAT 243 >gi|332186336|ref|ZP_08388081.1| tim44-like domain protein [Sphingomonas sp. S17] gi|332013704|gb|EGI55764.1| tim44-like domain protein [Sphingomonas sp. S17] Length = 257 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 108/219 (49%), Gaps = 9/219 (4%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEK-PFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F ++L A + F+ L+L VLGK+TG+E+ P S D + L + + Sbjct: 44 FYVVLLAMVALFLALRLYSVLGKRTGHEQQPLP--------RSADDRARPVVLPRAAEPA 95 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + I R + +R I++ FD FL A+++Y +++F++G A+ +L Sbjct: 96 QSPAPVANRNIDPRAEQGLRAIIAGEPGFDVNQFLGGAQSAYRMTLEAFWKGDEQALAEL 155 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 VD+ V F ++++ R+ + + + L+ +D KI+++ + IT+R ++ + Sbjct: 156 VDTDVLGAFAEAIAQRQEAGETLDNRLIRVDSAKIVDSQLAGRDARITVRFDADIVAVTR 215 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 D + +I+ + DIWTF R + +PNW L+ T Sbjct: 216 DAEGQVIAGSLSDAVETHDIWTFARTLKSGDPNWKLVDT 254 >gi|85705737|ref|ZP_01036834.1| transporter, Tim44 family protein [Roseovarius sp. 217] gi|85669727|gb|EAQ24591.1| transporter, Tim44 family protein [Roseovarius sp. 217] Length = 219 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 111/225 (49%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G E P + + S+R E +I G Sbjct: 1 MNSPILQLLVLAGIAIFLILRLKSVLGTRDGFEGPARNAPTPET--SRRREFEVIE--GG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D +D + P + + D+ + DF FL AR +YE I+ +F GK+ Sbjct: 57 PDHDIVDHV----PEDSEAAGALADMKRIEPDFSVTTFLQGARGAYEMILMAFERGKLDE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 I +D VY+ F + +R+ ++++ +G+ ++ + +A + T IT+R VG+ Sbjct: 113 ITPFLDREVYETFAQVVDSREQQGLSIEAEFIGVRELSLFDAKFDAATRRAEITVRYVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 +S D + ++ P + DIWT+ R + +PNW L++T Sbjct: 173 LVSVVRDSNGEIVEGAPGQSKRQKDIWTYERIMGSDDPNWRLVAT 217 >gi|126738514|ref|ZP_01754219.1| transporter, Tim44 family protein [Roseobacter sp. SK209-2-6] gi|126720313|gb|EBA17019.1| transporter, Tim44 family protein [Roseobacter sp. SK209-2-6] Length = 241 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 108/226 (47%), Gaps = 13/226 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER-GIITLGK 64 M+S +L+ A I F+ L+L+ VLG + G EKP KR R + + Sbjct: 24 MESPLIQLLVLAGIAVFLILRLKSVLGTREGFEKPPVS------AAEKRQGRPDLEVIEG 77 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 G +D D + E P + R F +F+ AR +YE I+ F G++ Sbjct: 78 GPDRDITDHVEEESPAAQAFASMKR----AEPSFSVSEFVQGARGAYEMILMGFENGELD 133 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVG 182 A++ + VY F ++++ R+ +++ +G+ + ++ A ++ NT +T+R VG Sbjct: 134 ALKGFLAEDVYDSFVEAVADREDKGLTIEAEFIGVRETAVVGAHFDDANNTAEVTMRFVG 193 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + S D+D ++ D + + D W F R++ +PNW L++T Sbjct: 194 ELTSVVRDRDGEIVEGDAKAVKRQKDTWVFARSMGTDDPNWQLVAT 239 >gi|254486605|ref|ZP_05099810.1| transporter, Tim44 family [Roseobacter sp. GAI101] gi|214043474|gb|EEB84112.1| transporter, Tim44 family [Roseobacter sp. GAI101] Length = 219 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 110/225 (48%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EK + +K + Sbjct: 1 MNSPMIQLLVLAGIAVFLILRLKNVLGTREGFEKK-------PEIDAKPQKPSGPAFEVI 53 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + +LD I + P G+ + ++ V F DFL AR +YE IV F G + Sbjct: 54 EGGPDLD-ITDHAPEGSDTALALAEMKRVEPSFGVSDFLGGARGAYEMIVMGFEHGNLDD 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 I+ + ++ F D ++ R+ V+S+ +GI +M++ NA++++ T +TIR V + Sbjct: 113 IKPFLSEDIFDSFVDGIAAREDQGLTVESTFIGIREMELENATMDKATKEAELTIRFVAE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S DKD ++I P + D W F R + +PNW+L+ST Sbjct: 173 MTSVVKDKDGMVIEGSPTEVKRQKDTWVFARVMGSDDPNWLLVST 217 >gi|83594937|ref|YP_428689.1| hypothetical protein Rru_A3608 [Rhodospirillum rubrum ATCC 11170] gi|83577851|gb|ABC24402.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 219 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 115/233 (49%), Gaps = 37/233 (15%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEK----PFSGF---------FSGKYVFSKRDERGI 59 I+ FA I F+ L+LR VLG++TG E+ PF+ SG+ + R G Sbjct: 10 IIFFAMIAAFLVLRLRSVLGRRTGEEQRRPDPFAQPESAQDNVIDLSGRKAVAGRPGDGT 69 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + G + I F P+ FL A+ ++E I+ ++ Sbjct: 70 LAGG------------------------LTQIQLTDPSFSPEGFLIGAKAAFEMILMAYA 105 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ V+Q+F+ ++ R+ ++ +++ LVG ++I+ A ++ +T++ Sbjct: 106 KGDKAVLKPLLAGEVFQNFSRAIDEREQADETMETDLVGFKSVEILRAGMDGQDALVTVK 165 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 V + +++ DK + ++ +P +V DIWTF R+ ++PNW LI+T++ E Sbjct: 166 FVTEQVNSVRDKSDTVVDGNPNQVEEVTDIWTFRRDTVSNDPNWDLIATQVPE 218 >gi|163745120|ref|ZP_02152480.1| hypothetical protein OIHEL45_06015 [Oceanibulbus indolifex HEL-45] gi|161381938|gb|EDQ06347.1| hypothetical protein OIHEL45_06015 [Oceanibulbus indolifex HEL-45] Length = 219 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 109/225 (48%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EKP S R + G Sbjct: 1 MNSPLIQLLVLAGIAVFLILRLKNVLGTREGFEKPPVS----DQTPSARSGPSFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D + E G L ++ R V F DFL AR +YE IV + G + Sbjct: 57 PDLDITDHVPEDSTSGKALAEMKR----VEPSFGVNDFLQGARGAYEMIVMGYERGDLAE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 I+ + VY+ F D ++ R+ ++++ +G+ ++++I+A ++E T +TIR VG+ Sbjct: 113 IQPFLAEDVYESFVDGVAAREDQGLTIEANFIGVRELELIDARMDEATKEAELTIRFVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 SA +++ ++ + D W F R + +PNW+L+ST Sbjct: 173 LTSAVRNREGEIVEGSINEIKRQKDTWVFARVMGSDDPNWLLVST 217 >gi|103487499|ref|YP_617060.1| import inner membrane translocase, subunit Tim44 [Sphingopyxis alaskensis RB2256] gi|98977576|gb|ABF53727.1| import inner membrane translocase, subunit Tim44 [Sphingopyxis alaskensis RB2256] Length = 221 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 107/220 (48%), Gaps = 13/220 (5%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI---ITLGKGKK 67 F I+L A I F+ ++L VLGK+TG+E+ + V +RD+R I L G+ Sbjct: 4 FSIVLLAMIAAFLGMRLYSVLGKRTGHEQ--------EPVLPRRDDRSAPAPIRLDDGET 55 Query: 68 KDNLDSINELFPI--GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + S + + +R +++ +FD F+ AR +Y I+++F++G Sbjct: 56 SAIVTSATDTAGLVYEPSAEAGLRQLLANDRNFDAGRFMEGARAAYRMILEAFWKGDRET 115 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + L D Y F +++ R++ + +++ L+ ID KI A + IT+R Sbjct: 116 LRDLCDDDSYDAFVEAIDAREARGETLENRLIRIDSAKITAAELNRGEARITVRYHADIS 175 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 + + D D LI+ + D+WTF R I ++PNW+L Sbjct: 176 AITRDADGKLIAGSMSDAAQTDDLWTFRRQIGSNDPNWLL 215 >gi|296283090|ref|ZP_06861088.1| hypothetical protein CbatJ_05690 [Citromicrobium bathyomarinum JL354] Length = 220 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 111/227 (48%), Gaps = 15/227 (6%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEK-PFSGFFSGKYVFSKRDERGI-----ITLGK 64 + I++ A I F+ L+L VLG++ +E+ P F K D+ G+ T Sbjct: 3 YEIVILAMIAVFLGLRLYSVLGRRAEHEEEPVPHRFDAK------DKAGLAAAPQTTQAP 56 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 + ++ ++ P+ + + ++ I++ FD FL A+ +Y I++++++G Sbjct: 57 PRAVTEQEAKPDVLPV---VERGVQSIIAADRGFDITSFLEGAKGAYGMILEAYWKGDKE 113 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 + L D VYQ F ++ R+ + + + L+ I+D I +A +E IT+R V Sbjct: 114 TLRDLCDESVYQGFAQAIDAREEAGETLDNRLIRIEDATIRDAELERKEARITVRFVADI 173 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + ++D+D +++ + + DIWTF R + P+W L+ T G Sbjct: 174 AAVTHDRDGNMVAGSLDDAIESRDIWTFARRVDSRTPDWQLVETDEG 220 >gi|254460692|ref|ZP_05074108.1| import inner membrane translocase, subunit Tim44 [Rhodobacterales bacterium HTCC2083] gi|206677281|gb|EDZ41768.1| import inner membrane translocase, subunit Tim44 [Rhodobacteraceae bacterium HTCC2083] Length = 217 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 14/226 (6%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G E+P + SG+ KR E +I G Sbjct: 1 MNSPIIQLLVLAGIAVFLILRLKNVLGTREGFEQPPAQVPSGR----KRPEFEVIEGGPD 56 Query: 66 KK-KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 D+ D + E + + + + F DFL AR +YE I+ F G++ Sbjct: 57 PDIADHTDGMPEA-------AEALAKMKAAEPSFGVSDFLGGARGAYEMILIGFERGEMA 109 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI-EENTV-YITIRIVG 182 I+ +D VY F + + R V++ VGI +M + +A+ +EN + ++++ +G Sbjct: 110 DIKPFLDDDVYASFAEVVEMRAKQGLTVEAEFVGIREMSLADATFDDENGIGEVSVKFIG 169 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + S D ++ D + + DIWTF R + +PNW L++T Sbjct: 170 EMTSVVRDNAGEIVEGDAKKVKRQKDIWTFARKMGSDDPNWQLVAT 215 >gi|254463881|ref|ZP_05077292.1| transporter, Tim44 family [Rhodobacterales bacterium Y4I] gi|206684789|gb|EDZ45271.1| transporter, Tim44 family [Rhodobacterales bacterium Y4I] Length = 214 Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 106/222 (47%), Gaps = 19/222 (8%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG----IITLGKGKKK 68 +L+ A I F+ L+LR VLG + G EKP + + RG + + G + Sbjct: 4 LLVLAGIAVFLILRLRSVLGTREGFEKP---------PLPQSEARGRRPDLEVIEGGPDR 54 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 D D + E G++ + + + F ++F+ AR +YE I+ F G + I+ Sbjct: 55 DITDYVAE----GSKQAQALAAMKRAEPSFQVQEFVQGARGAYEMILMGFEHGNLDDIQP 110 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFIS 186 + V+ F D+++ R+ +++ +G+ + + +A + T IT+R VG+ S Sbjct: 111 FLAEDVFDSFVDAVAQREDKGYKIEADFIGVRETTLQDAQFDPQTGRAEITMRFVGELTS 170 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 D+ ++ DP+ + D W F RN+ +PNW L++T Sbjct: 171 VVRDRGGDIVEGDPKAIKRQKDTWIFARNMGSDDPNWQLVAT 212 >gi|149912880|ref|ZP_01901414.1| transporter, Tim44 family protein [Roseobacter sp. AzwK-3b] gi|149813286|gb|EDM73112.1| transporter, Tim44 family protein [Roseobacter sp. AzwK-3b] Length = 219 Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 112/224 (50%), Gaps = 8/224 (3%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G E P +G +RD +I G Sbjct: 1 MNSPLLQLLVLAGIAIFLILRLKSVLGTRDGFEGPPRSERAGATP-QRRDTFEVIE--GG 57 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D +D++++ L ++ R + F+ FL AR +YE I+ +F G++ Sbjct: 58 PDYDIIDNVSDGSDAADALARMKR----IEPSFNVTQFLQGARGAYEMILMAFERGQLED 113 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI-EENTVYITIRIVGQF 184 + +D VY+ F + R+ V++ +G+ + K+ A++ ++N IT+R VG+ Sbjct: 114 VAPFLDEDVYEAFAQVIDARQEQGLIVEAEFLGLRETKLAEATLSDDNRAAITVRFVGEL 173 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S D + ++ D + + DIWTF R + +PNW L++T Sbjct: 174 TSIVRDANGEIVEGDAKTAKRQKDIWTFERVMGSDDPNWRLVAT 217 >gi|255263169|ref|ZP_05342511.1| transporter, Tim44 family [Thalassiobium sp. R2A62] gi|255105504|gb|EET48178.1| transporter, Tim44 family [Thalassiobium sp. R2A62] Length = 219 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 104/225 (46%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+LR VLG + G EKP + S R + G Sbjct: 1 MNSPIIQLLVLAGIAIFLILRLRNVLGTREGFEKPPAQQSSAP----DRALSDFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D + P G + + V F+ +FL AR +YE I+ +F G++ Sbjct: 57 PDHDITDHV----PEGGDAYNALLGMKKVDPSFNVGEFLGGARGAYEMILMAFERGEIEE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 I+ + S VY+ F + RK+ ++++ VGI DM + A E T I +R VG+ Sbjct: 113 IKPFLSSDVYEAFATVVDDRKAKGVTIEANFVGISDMALNAADFNETTGEAEIAVRFVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S DK +I + D WTF R++ +PNW L++T Sbjct: 173 MTSIVRDKGGDVIEGSETTVKRQKDTWTFARDMDADDPNWDLVAT 217 >gi|94498195|ref|ZP_01304756.1| import inner membrane translocase, subunit Tim44 [Sphingomonas sp. SKA58] gi|94422325|gb|EAT07365.1| import inner membrane translocase, subunit Tim44 [Sphingomonas sp. SKA58] Length = 217 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 109/222 (49%), Gaps = 13/222 (5%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK-- 68 ++I++ A I F+ L+L VLGK+TG+E+ + + D + L G Sbjct: 2 YVIVILAMIAGFLALRLYSVLGKRTGHEQEPA-------LRPAEDRAKVTVLQPGPTNHG 54 Query: 69 --DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 D + L G +R +++ +FD F+ AR++Y+ ++++F+ G + Sbjct: 55 GGDTVRLAEGLIAPGAETG--VRTLIATDRNFDVPQFVEGARSAYKMVLEAFWRGDREEL 112 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 L D+ V F D+++ R+++ + + LV I+ +II A++ + T I +R + Sbjct: 113 AWLCDADVLASFEDAIAAREADGHVLDNRLVRIEKAQIIEATVRDGTAEIAMRFEADIAA 172 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + D+D +I+ DIWTF R+I ++PNW L T Sbjct: 173 VTRDRDGNVIAGSMTDAIDTKDIWTFTRDIRSADPNWKLSET 214 >gi|288959728|ref|YP_003450069.1| mitochondrial import inner membrane translocase [Azospirillum sp. B510] gi|288912036|dbj|BAI73525.1| mitochondrial import inner membrane translocase [Azospirillum sp. B510] Length = 231 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 110/224 (49%), Gaps = 12/224 (5%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRD------ERGIITLGKGK 66 I++FA I F+ +LR VLG++TG E+ FS +K D +R Sbjct: 10 IVIFAMIAAFLVYRLRSVLGRRTGEERQRPNPFSAAPGAAKPDNVVSLPQRNQPRPDAAP 69 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 +D + S +E + +++ I + FD K FL+ A+ ++ IVD+F G + Sbjct: 70 GQDVMAS-DEPLSLAASIDQ----IRAADPTFDEKHFLDGAKAAFAMIVDAFARGDTATL 124 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE-NTVYITIRIVGQFI 185 L+ VY F + R++ + ++ + + + +++ A ++ T +T+R+V + Sbjct: 125 RPLLADDVYDGFARVIRDRQAAGEQHETRIEQVREAEVVEAKLDAGRTARVTVRLVSDQV 184 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + D++ ++ DP+ + D+WTF R++ +PNW L+ + Sbjct: 185 NVVRDRNGAVVDGDPKALVENTDVWTFARDLRSRDPNWALVEVR 228 >gi|85709415|ref|ZP_01040480.1| hypothetical protein NAP1_11058 [Erythrobacter sp. NAP1] gi|85688125|gb|EAQ28129.1| hypothetical protein NAP1_11058 [Erythrobacter sp. NAP1] Length = 219 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 110/219 (50%), Gaps = 4/219 (1%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 I++ A I F+ L+L VLG++ +E+ ++ + + G+ + Sbjct: 5 IVILAMIAAFLGLRLYSVLGRRAEHEEES---VPQRFDAGDKPQAQPPIAGQPAQPAPQR 61 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 SI EL + + + +R+I S FD F++ A+ +YE +++ F+EG + +L D Sbjct: 62 SI-ELEGVMPAVERGVREIASADRSFDIGQFMDGAKGAYEMVLEGFWEGDKDTLRELCDD 120 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 VY F+ ++ R+ + + L+ I++ +I +AS++ I + V + + DKD Sbjct: 121 DVYAGFSAAIDAREEAGHTLDNKLIRIEETRIHSASMDGRMARIAVLFVADIAAVTRDKD 180 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++++ + + D+WTF RNI +PNWVL T G Sbjct: 181 GVVVAGSLDDAIESRDVWTFSRNIGSRDPNWVLDETDEG 219 >gi|304320483|ref|YP_003854126.1| hypothetical protein PB2503_04547 [Parvularcula bermudensis HTCC2503] gi|303299385|gb|ADM08984.1| hypothetical protein PB2503_04547 [Parvularcula bermudensis HTCC2503] Length = 222 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 112/222 (50%), Gaps = 11/222 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 D +++ F I F+ +L +LG K G+E P + + R ER G+G ++D Sbjct: 3 DPVLIFFVVIAAFLSYRLYTLLGSKGGHE-PTDAERERIGLPTGRPERD----GQGTQED 57 Query: 70 N--LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 + ++ P+ V D Y DFDP +F+ A+ +YE I+++F G++ + Sbjct: 58 EAVVAPRSDAKPLPAWAETVRAD----YADFDPDEFVTGAKAAYEMIIEAFANGRLDDVR 113 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 VD V + F ++ R + ++ ++ +LVGI+ +++ A + + +T++ I Sbjct: 114 AYVDPDVMRTFEIAVRGRDNAQQTMEVTLVGIERAEVVEAKRQSAHLDVTVKFRSDQIRV 173 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + + + +I DP VID WTF R + ++PNW L +T+ Sbjct: 174 TRNAEGDVIEGDPNRIDLVIDRWTFSRPLSSTDPNWTLTATE 215 >gi|254450565|ref|ZP_05064002.1| transporter, Tim44 family [Octadecabacter antarcticus 238] gi|198264971|gb|EDY89241.1| transporter, Tim44 family [Octadecabacter antarcticus 238] Length = 224 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 10/230 (4%) Query: 1 MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60 M M+S +L+ A I F+ L+LR VLG + G EKP + + ++R + Sbjct: 1 MKETHMNSPVLQLLVLAGIAIFLILRLRNVLGTREGFEKPKAP----PAIPTRRFGPDLE 56 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 + G D D ++ + + K + + + F+ ++FL AR +YE I+ F + Sbjct: 57 VIEGGPDPDVTDYVD----ADSDMAKALTAMKTADRSFNVREFLRGARGAYEMILTGFEK 112 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITI 178 G + I+ + S VY F + +R+ + ++ +GI + +++A +E T ITI Sbjct: 113 GDLAEIKPFLSSDVYDAFAGVVESREKDGLSIDFKFIGISETTLVDAEFDETTKNAEITI 172 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + + + SA YD L P K D+WTF R + +PNW L++T Sbjct: 173 KFLNESTSAVYDNGGDLKEGSPTEIKKQRDVWTFGRTMGTGDPNWFLVAT 222 >gi|307294078|ref|ZP_07573922.1| import inner membrane translocase subunit Tim44 [Sphingobium chlorophenolicum L-1] gi|306880229|gb|EFN11446.1| import inner membrane translocase subunit Tim44 [Sphingobium chlorophenolicum L-1] Length = 218 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 116/224 (51%), Gaps = 17/224 (7%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK---- 66 ++I++ A I F+ L+L VLGK+TG+E+ + +ER +T+ + + Sbjct: 2 YVIVILAMIAGFLALRLYSVLGKRTGHEQ--------EPALRPAEERAKVTIVQPRPVTE 53 Query: 67 -KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D++ + L G +R +++ +FD F+ A+++Y ++++F+ G Sbjct: 54 MAGDSVRLADGLIAPGGEAG--VRALIAADRNFDVPQFVEGAKSAYRMVLEAFWRGDRQE 111 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 +E L D+ V F D+++ R++ + + LV I+ ++I++A + I++R Sbjct: 112 LEWLCDADVLASFQDAITAREAEGHVLDNRLVRIEKVQIVDAGVTGRMAEISLRFEADIA 171 Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + + D+D N++ S + G DIWTF R++ ++PNW L T Sbjct: 172 AVTRDRDGNVVAGSLTDAVG-TNDIWTFTRDLRSTDPNWKLSET 214 >gi|254440619|ref|ZP_05054113.1| Tim44-like domain family [Octadecabacter antarcticus 307] gi|198256065|gb|EDY80379.1| Tim44-like domain family [Octadecabacter antarcticus 307] Length = 219 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 109/225 (48%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+LR VLG + G EKP + S+R + + G Sbjct: 1 MNSPVLQLLVLAGIAIFLILRLRNVLGTREGFEKPKVA----PAIPSRRPTPDLEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D ++ + + +V+ + + F+ ++FL AR +YE I+ F +G + Sbjct: 57 PDPDVTDYVD----ADSDVARVLTAMKTADRSFNVREFLRGARGAYEMILTGFEKGDIAE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 I+ + S VY F + R+ + +V +GI + +++A +E T I+I+ + + Sbjct: 113 IKPFLSSDVYDAFAGVVEAREKDGLSVDFKFIGISETTLVDAEFDETTKNAEISIKFLCE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 SA YDK L K D+WTF R + +PNW L++T Sbjct: 173 STSAVYDKGGDLKEGSATDIKKQRDVWTFGRTMGTGDPNWFLVAT 217 >gi|296444992|ref|ZP_06886953.1| import inner membrane translocase subunit Tim44 [Methylosinus trichosporium OB3b] gi|296257413|gb|EFH04479.1| import inner membrane translocase subunit Tim44 [Methylosinus trichosporium OB3b] Length = 229 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 108/224 (48%), Gaps = 9/224 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII----TLGKG 65 D IL+ A + FV +L VLG +T E +G V S G++ + G Sbjct: 8 DPSILVLAALAAFVVWKLWSVLGVRTDRENSAAG-----RVPSPGRRFGVVPPPASTGFA 62 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + + L G++ + + + FD K+FL A+ +YE +V+SF +G Sbjct: 63 APPQDQSRWDGLAEPGSKGWAGLDALAAADRGFDAKNFLEGAKKAYELVVESFAKGDREM 122 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + L+ + VY F +++ R+ ++ ++ +V I+ + +A +E + IR V + I Sbjct: 123 LRNLLANDVYDSFAKAIAAREQRGESAEARVVAIETASVEDAQVERGRAQVAIRFVVKLI 182 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 SA D +I D E + D+WTF R+I +PNW L++T+ Sbjct: 183 SARRDSAGEVIEGDVERPIDITDLWTFARDISSRDPNWKLVATE 226 >gi|56698697|ref|YP_169074.1| Tim44 family protein [Ruegeria pomeroyi DSS-3] gi|56680434|gb|AAV97100.1| transporter, Tim44 family [Ruegeria pomeroyi DSS-3] Length = 218 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 103/225 (45%), Gaps = 11/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EKP R R + G Sbjct: 1 MNSPLIQLLVLAGIAIFLILRLKSVLGTREGFEKP-----PVPQQPENRTRRDFEVIEGG 55 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D D + E P L + R + F +F+ AR +YE IV F G + Sbjct: 56 PDRDITDHVPEDSPQAQALAAMKR----IEPAFSVSEFVQGARGAYEMIVMGFERGNLDE 111 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183 IE + V++ F ++ R+ +++ +G+ + I + ++ N IT+R VG+ Sbjct: 112 IEPFLTEEVFETFVGVVAAREDQGLTIEAEFIGVRETSIQDVHFDKDSNRGEITMRFVGE 171 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S D+ +I P + D+WTF R + +PNW+L++T Sbjct: 172 LTSVVRDRGGDVIEGSPTAVKRQKDVWTFARVMGTDDPNWLLVAT 216 >gi|294675588|ref|YP_003576203.1| import inner membrane translocase subunit Tim44 [Rhodobacter capsulatus SB 1003] gi|294474408|gb|ADE83796.1| import inner membrane translocase, subunit Tim44 [Rhodobacter capsulatus SB 1003] Length = 219 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 110/226 (48%), Gaps = 12/226 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNE-KPFSGFFSGKYVFSKRDERGIITLGK 64 M F +++ A I F+ L+L+ VLG + G E +P G + + + Sbjct: 1 MSPALFQLIVLAAIAIFLILKLKSVLGTREGYEDEPMPVEAPGPRAADRFE-----VIEG 55 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 G D +D + P G+ + + V F+ FL ++ +YE I+ +F G + Sbjct: 56 GPDHDIIDHV----PEGSDAAVALAQMKRVEPTFNVGAFLQGSKVAYEMILMAFERGDLS 111 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVG 182 A+ + + V + F +++ R+ V++S +G+ ++ + AS E++ +T+R G Sbjct: 112 AVRRFLAPEVLEAFETAVADRQRQGLTVEASFLGLRELVLTEASFNESSREAEVTVRFGG 171 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + IS + D + ++ DP+ K D WTF R + S+PNW L++T Sbjct: 172 ELISVARDANGQIVEGDPKAPRKQRDSWTFARVMGSSDPNWQLVAT 217 >gi|149204297|ref|ZP_01881264.1| transporter, Tim44 family protein [Roseovarius sp. TM1035] gi|149142182|gb|EDM30229.1| transporter, Tim44 family protein [Roseovarius sp. TM1035] Length = 219 Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G F G R R + G Sbjct: 1 MNSPILQLLVLAGIAIFLILRLKSVLGTRDG----FEGPTRSAPAPETRRRREFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D +D + E L ++ R + DF FL AR +YE I+ +F GK+ Sbjct: 57 PDHDIVDHVPEDSDAAAALAEMKR----IEPDFSVTTFLQGARGAYEMILMAFERGKLDE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 + +D VY+ F + R+ +++ +G+ ++ + +A + +T I++R VG+ Sbjct: 113 VTPFLDRDVYETFAQVVDAREQQGLTIEAEFIGVRELTLADARFDADTRRAEISVRYVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 IS D ++ P + D+WT+ R + +PNW L++T Sbjct: 173 LISVVRDSTGEIVEGVPGQSKRQKDVWTYERVMGADDPNWRLVAT 217 >gi|86136747|ref|ZP_01055325.1| transporter, Tim44 family protein [Roseobacter sp. MED193] gi|85826071|gb|EAQ46268.1| transporter, Tim44 family protein [Roseobacter sp. MED193] Length = 218 Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 114/227 (50%), Gaps = 15/227 (6%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG--IITLG 63 M+S +L+ A I F+ L+LR VLG + G EKP +++ G + + Sbjct: 1 MESPLISLLVLAGIAVFLILRLRSVLGTREGFEKP-------PVAPTQKRSNGPDLEVIE 53 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 G +D D + E G+ K + + V F +F+ AR++YE I+ F +G++ Sbjct: 54 GGPDRDITDYVEE----GSDQAKALAAMKRVEPSFQVGEFVQGARSAYEMILMGFEKGEL 109 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIV 181 I+ + V+ F ++++ R+ +++ +G+ + +++A +E T +T+R + Sbjct: 110 DDIQGFLAEDVFDSFVEAVAQREDQGLTIEAEFIGVRETAVVDAIFDETTGVAELTMRFI 169 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 G+ S +++ ++ D + + DIW F R++ +PNW L++T Sbjct: 170 GEMTSVVRNREGEIVEGDAKAIKRQKDIWVFARSMGVDDPNWQLVAT 216 >gi|119385510|ref|YP_916566.1| import inner membrane translocase, subunit Tim44 [Paracoccus denitrificans PD1222] gi|119375277|gb|ABL70870.1| import inner membrane translocase, subunit Tim44 [Paracoccus denitrificans PD1222] Length = 218 Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 10/218 (4%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 +L+ A I F+ L+LRGVLG + G E P + + +R + G + Sbjct: 8 LLVLAAIAVFLILRLRGVLGTRDGFESP--------RIPEEPVQRRRFDVIDGTAEAGDS 59 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 I + G+ K + ++ + DF FL+ A+++YE I+ +F G + + + Sbjct: 60 DITDHAEPGSPAAKALAEMKRIEPDFAVGPFLSGAKSAYEMILMAFERGDLSEVRGFLAP 119 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISASYD 190 V + F + RK+ ++ +G + + A T +++R VG+ I A+ D Sbjct: 120 PVAEAFESVIEDRKARNLTTEAQFLGTRETALAGAEFTPATGMAELSVRFVGEMIVATRD 179 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 D +I DP+ K D WTF R + +PNW L++T Sbjct: 180 ADGNVIEGDPKAARKQRDTWTFARRMGQDDPNWQLVAT 217 >gi|163738003|ref|ZP_02145419.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis BS107] gi|163742601|ref|ZP_02149987.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis 2.10] gi|161384186|gb|EDQ08569.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis 2.10] gi|161388619|gb|EDQ12972.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis BS107] Length = 218 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 110/225 (48%), Gaps = 11/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EKP + ++R E +I G Sbjct: 1 MESPVIQLLVLAGIAVFLILRLKSVLGTREGFEKPAVPQADRQ---NRRPELEVIE--GG 55 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D +D + E P + L + + F+ +DF+ AR +YE I+ +F G++ Sbjct: 56 PDHDIVDYVPEDSPQASDLAAMKK----AEPSFEVRDFVQGARGAYEMILMAFERGELDD 111 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 IE + V+ F +++ R+ +++ +G+ + + + S + T IT+R V + Sbjct: 112 IEAFLAPDVFDSFVTAVAHREDQGLTIEAEFIGVRETTLTDTSFDPATGDAQITMRFVAE 171 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S D+ ++ DP+ + D W F R + ++PNW L++T Sbjct: 172 LTSVVRDRGGDIVEGDPKAVKRQKDTWVFGRTMGSADPNWHLVAT 216 >gi|254455846|ref|ZP_05069275.1| import inner membrane translocase, subunit Tim44 [Candidatus Pelagibacter sp. HTCC7211] gi|207082848|gb|EDZ60274.1| import inner membrane translocase, subunit Tim44 [Candidatus Pelagibacter sp. HTCC7211] Length = 198 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 49/226 (21%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 I+L A I F+FL+LRG+LGK+TG F GK Sbjct: 10 IILLAMIAGFIFLRLRGILGKRTG--------FEGK------------------------ 37 Query: 73 SINELFPIGTRLNKVMRDIVS--------VYTDFDPKDFLNEARNSYEAIVDSFFEG--K 122 + +K++++ V+ + + K+F+ A+ +YE I+ F + K Sbjct: 38 -------AAPQFDKILKEAVAKQAPVNNETFDENAQKEFIKGAKIAYETIITDFSDNDNK 90 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + + L++ +Y FND+L R + + +GI+ I + + +T+ + Sbjct: 91 LTTSKPLLNKEIYDQFNDALKERSERGHYAEITFIGINSATIKEHKKIDKILNVTVDFIA 150 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + I+ DKD +IS DPE K+ D W F R++ NPNW L++T Sbjct: 151 EVITCIKDKDKKIISGDPEKIKKIYDTWVFSRDVTSPNPNWQLVNT 196 >gi|46204686|ref|ZP_00049618.2| COG4395: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 223 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 104/224 (46%), Gaps = 16/224 (7%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEK------------PFSGFFSGKYVFS- 52 DS D L+F + FV +LR VLG+KTG E+ P +G G V Sbjct: 2 QDSFDVTTLIFLALAVFVIWRLRSVLGQKTGAERSPFRPVERNRTEPPAGRAEGDNVVRL 61 Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 +R + I E G+ + + + +V V FDP+ FL A+ +YE Sbjct: 62 PGADRAQAAAAVQTVTRDWRGIAEP---GSAVARGLEQVVQVEPGFDPRTFLEGAKGAYE 118 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 IV +F +G + L+ VY F+ +S R+ + V+++ + ID +I+ ++ Sbjct: 119 IIVTAFAQGDRKTLRPLLSREVYDGFDRVISERERRRETVETTFISIDKAEIVAIEVKNR 178 Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 IT+R + I+A+ D D +I + E +V D+WTF R + Sbjct: 179 AAQITVRFLSNLITATRDADGKVIDGNAETGVEVPDVWTFARTL 222 >gi|300024770|ref|YP_003757381.1| import inner membrane translocase subunit Tim44 [Hyphomicrobium denitrificans ATCC 51888] gi|299526591|gb|ADJ25060.1| import inner membrane translocase subunit Tim44 [Hyphomicrobium denitrificans ATCC 51888] Length = 251 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 78/137 (56%), Gaps = 4/137 (2%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 +FDP+ F+ A +YE IV +F EG ++ L+ V+ F+ +++ R++ + + Sbjct: 112 EFDPESFVTGAGRAYEMIVSAFAEGNRRMLKDLLSKDVFDGFSSAIADREARGEVLDQQF 171 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 VGI I++A ++ T +T+R + + ISA+ DK +I+ D + V DIW F R++ Sbjct: 172 VGIKKADIVDAEVKNGTAALTVRFISELISATRDKAGEVIAGDAQKIKDVTDIWIFSRDV 231 Query: 217 PP----SNPNWVLISTK 229 SNPNW L++T+ Sbjct: 232 SSAKALSNPNWRLVATQ 248 >gi|91762532|ref|ZP_01264497.1| Putative translocase transmembrane protein with Tim44 Pfam domain [Candidatus Pelagibacter ubique HTCC1002] gi|91718334|gb|EAS84984.1| Putative translocase transmembrane protein with Tim44 Pfam domain [Candidatus Pelagibacter ubique HTCC1002] Length = 197 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 106/220 (48%), Gaps = 38/220 (17%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKY--VFSKRDERGIITLGKGKKKDN 70 I+L A I F+FL+LRG+LGKKTG F GK F K ++ IT Sbjct: 10 IILLAMIAGFIFLRLRGILGKKTG--------FEGKIPPQFEKEFQKTNITPK------- 54 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG--KVHAIEK 128 P+ ++V + K+FL A+ +YE I+ F + K+ A + Sbjct: 55 --------PVSENFDEVSQ-----------KEFLKGAKIAYETIITDFSDSDNKLIASKP 95 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L++ ++Y F ++L R + + + +GI I E+++ +T+ V + I+ Sbjct: 96 LLNKKIYDQFKEALEDRANKGHFAEITFIGIKSAVIKTHKKIEDSLEVTVDFVSEIITCI 155 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 DKD ++S D + V D W F ++I SNPNW+LI+T Sbjct: 156 KDKDKNIVSGDSDKIKTVYDTWVFSKDIKSSNPNWLLINT 195 >gi|85374926|ref|YP_458988.1| hypothetical protein ELI_10495 [Erythrobacter litoralis HTCC2594] gi|84788009|gb|ABC64191.1| hypothetical protein ELI_10495 [Erythrobacter litoralis HTCC2594] Length = 215 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 107/224 (47%), Gaps = 14/224 (6%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 F I++ A I F+ ++L VLG++ E+ V R + G K Sbjct: 3 FEIVILAMIAAFLGMRLYSVLGQRAEQEEE---------VIPNRYDAGDQPQQAAPKPAT 53 Query: 71 LDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 + EL P + + + +R I + FD FL A+ +Y +++++++G + Sbjct: 54 --QVVELQPNPNLHPSVEQGVRAIAAADRGFDVSSFLEGAKGAYGMVLEAYWKGDKETLR 111 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 +L D VY F ++ R+ + + ++L+ I+D I +A ++ T +T+R V + Sbjct: 112 ELCDDDVYASFAGAIDAREEAGEALDNTLIRIEDAVIRDAEMDGRTARVTVRFVADIAAV 171 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + DKD +I+ + + DIWTF RN+ + P+WVL T G Sbjct: 172 TRDKDGNVIAGSLDDAIESRDIWTFSRNVDAAGPDWVLDETDEG 215 >gi|254476055|ref|ZP_05089441.1| transporter, Tim44 family [Ruegeria sp. R11] gi|214030298|gb|EEB71133.1| transporter, Tim44 family [Ruegeria sp. R11] Length = 214 Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 105/218 (48%), Gaps = 11/218 (5%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 +L+ A I F+ L+L+ VLG + G EKP + SKR E +I G + Sbjct: 4 LLVLAGIAVFLILRLKSVLGTREGFEKPIAPPAERP---SKRPEFEVIEGGPDQ------ 54 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 I + P G+ + + + V F +DF+ AR +YE I+ +F G++ I+ + Sbjct: 55 DITDYVPEGSAQAEDLAAMKKVEPSFQVRDFVQGARGAYEMILMAFERGELDDIQPYLAP 114 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISASYD 190 V+ F +++ R+ +++ +G+ + + + S + T IT+R V + S + Sbjct: 115 DVFDSFVTAVAHREDQGLTIEADFIGVRETTLTDTSYDSVTGEAQITMRFVAEMTSVVRN 174 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 ++ DP+ + D W F R + S+PNW L++T Sbjct: 175 SAGEIVEGDPKAIKRQKDTWVFGRTMGSSDPNWFLVAT 212 >gi|71083043|ref|YP_265762.1| translocase [Candidatus Pelagibacter ubique HTCC1062] gi|71062156|gb|AAZ21159.1| Putative translocase transmembrane protein with Tim44 Pfam domain [Candidatus Pelagibacter ubique HTCC1062] Length = 197 Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 38/220 (17%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKY--VFSKRDERGIITLGKGKKKDN 70 I+L A I F+FL+LRG+LGKKTG F GK F K ++ IT Sbjct: 10 IILLAMIAGFIFLRLRGILGKKTG--------FEGKIPPQFEKEFQKTNITPK------- 54 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG--KVHAIEK 128 P+ ++V + K+FL A+ +YE I+ F + K+ A + Sbjct: 55 --------PVSENFDEVSQ-----------KEFLKGAKIAYETIITDFSDSDNKLIASKP 95 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L+ ++Y F ++L R + + + +GI I E+++ +T+ V + I+ Sbjct: 96 LLSKKIYDQFKEALEDRANKGHFAEITFIGIKSAVIKTHKKIEDSLEVTVDFVSEIITCI 155 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 DKD ++S D + V D W F ++I SNPNW+LI+T Sbjct: 156 KDKDKNIVSGDSDKIKTVYDTWVFSKDIKSSNPNWLLINT 195 >gi|310817171|ref|YP_003965135.1| transporter, Tim44 family protein [Ketogulonicigenium vulgare Y25] gi|308755906|gb|ADO43835.1| transporter, Tim44 family protein [Ketogulonicigenium vulgare Y25] Length = 219 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 99/205 (48%), Gaps = 10/205 (4%) Query: 26 QLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLN 85 +LR VLG + G EKP + + KR +I G +D +D + P G+ Sbjct: 21 RLRSVLGSRDGFEKPIAQVPPEEA--RKRPTLDVIE--GGPDRDIVDHV----PEGSATA 72 Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145 ++ + F +FL+ +R +YE I+ +F G + + + V+ F ++ R Sbjct: 73 LIIGQMKKAEPSFSLSEFLSGSRGAYEMILMAFERGDIEPVRGFIAPEVFDAFAGVIADR 132 Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISASYDKDNLLISSDPEIF 203 ++ V++ +GI D+ + +A+ + T + +R V + S D D ++ P++ Sbjct: 133 QARGLKVEAHFIGIRDVGLDDAAFDPATGEAELVVRFVAEMTSVVRDADGTVVEGAPDVA 192 Query: 204 GKVIDIWTFVRNIPPSNPNWVLIST 228 + D+WTF R + S+PNW L++T Sbjct: 193 KRQKDVWTFARKMGASDPNWTLVAT 217 >gi|83950785|ref|ZP_00959518.1| transporter, Tim44 family protein [Roseovarius nubinhibens ISM] gi|83838684|gb|EAP77980.1| transporter, Tim44 family protein [Roseovarius nubinhibens ISM] Length = 214 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 104/218 (47%), Gaps = 11/218 (5%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 +L+ A I F+ L+LR VLG + G E P S + + +G + G D D Sbjct: 4 LLVLAGIAIFLLLRLRSVLGTRDGFEPPRS-----ELPGAPDRRQGFEVIEGGPDLDITD 58 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + E L ++ R + F +FL+ +R +YE I+ SF GK+ I + Sbjct: 59 HVPEDSDAAAALAEMKR----IEPSFSVSEFLSGSRQAYEWILMSFENGKLDEIVPFLSP 114 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISASYD 190 V++ F + R+ V++ G+ D+ +I+A++++ T IT++ +G+ S + Sbjct: 115 DVHEAFAQVIDARQEKNLTVEAEFYGVRDVTLIDAALDDTTKAAEITVKFLGELSSVVRN 174 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + +I P + D WTF R + +PNW L++T Sbjct: 175 EQGEIIEGTPGEPKRQKDTWTFERVMGSDDPNWRLVAT 212 >gi|294085200|ref|YP_003551960.1| hypothetical protein SAR116_1633 [Candidatus Puniceispirillum marinum IMCC1322] gi|292664775|gb|ADE39876.1| hypothetical protein SAR116_1633 [Candidatus Puniceispirillum marinum IMCC1322] Length = 212 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 30/227 (13%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVF--SKRDERGIITLGKG 65 I++FA I + L+L+ VLG++TG ++KP G V S +DE G + G G Sbjct: 6 IIIFAVIAVLLVLRLKSVLGQRTGFEQPQDKKPMQAANDGDVVPFPSNKDETGALN-GHG 64 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 I T L K R+ F FL A ++E ++ ++ EG + Sbjct: 65 --------------IAT-LRKADRN-------FTEAAFLGGATQAFEMVLRAYAEGDLAQ 102 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 +++L+ + Q F S+ R +N++++ L I + I+N ++ ++ +T+ Sbjct: 103 LKRLLGYDLLQSFTQSIQKRNANKESLTIDLENIKEASILNIAVVDSVAAVTVHFHSVQT 162 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + D D +I D +++DIWTF R++ ++PNW L+ T+ + Sbjct: 163 RIARDADENIIDEDESQSQEIVDIWTFERDLTLNDPNWKLVETETAD 209 >gi|84514927|ref|ZP_01002290.1| hypothetical protein SKA53_11923 [Loktanella vestfoldensis SKA53] gi|84511086|gb|EAQ07540.1| hypothetical protein SKA53_11923 [Loktanella vestfoldensis SKA53] Length = 211 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 10/217 (4%) Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73 ++ A I F+ L+LRGVLG + G EKP + + R + + G D D Sbjct: 1 MVLAGIAVFLILRLRGVLGTREGFEKPAVT----RQETTPRRKHDFDVIEGGPDLDITDH 56 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 + L + R V DF+ +FL AR +YE I+ +F + +I + Sbjct: 57 VQADSAAAKALAAMKR----VDPDFNVTEFLGGARGAYEMILMAFENSDLDSIVPFISHD 112 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQFISASYDK 191 VY+ F + R+ V +S +GI DM + +A +E T +++R + S + Sbjct: 113 VYEAFASVVDDRQRQGLTVTASFIGISDMTLAHAEFDEATKEGEVSVRFKSEMTSVVRNA 172 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + ++ + +++D WTF R + +PNW L++T Sbjct: 173 EGEVVEGSTKEIKRLVDTWTFARKMDAGDPNWKLVAT 209 >gi|87198608|ref|YP_495865.1| import inner membrane translocase, subunit Tim44 [Novosphingobium aromaticivorans DSM 12444] gi|87134289|gb|ABD25031.1| import inner membrane translocase, subunit Tim44 [Novosphingobium aromaticivorans DSM 12444] Length = 247 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 109/232 (46%), Gaps = 11/232 (4%) Query: 8 SGDFL----ILLFAFITFFVFLQLRGVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITL 62 SG+ L I++ A I F+ L+L VLG++ +E+P +K + G + Sbjct: 13 SGNLLVIVQIVILAMIAAFLGLRLYSVLGRRPERDEEPMRRRIEQPDPSAKPHQPGSMGN 72 Query: 63 GKGKKKDNLD------SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116 + + L + E +R I++ FD FL A+ +Y I++ Sbjct: 73 ARSAETGALAPRPRELAAPEAQTFDNSAEAGVRAIIAADRRFDVAQFLAGAKGAYGMILE 132 Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F+ G + +L D+ VY+ F ++ R + + + + L+ I++ +II ASIE T I Sbjct: 133 AFWRGDKEELAQLCDADVYEGFASAIDARANAGETIDARLIRIEEARIIGASIEGTTARI 192 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 +R + S + + + +++ + D+WTF R++ +P+W+L T Sbjct: 193 AVRFLADIASVTRNAEGHVVAGSLDDAIDARDLWTFRRDLTSRDPDWLLDET 244 >gi|254512041|ref|ZP_05124108.1| transporter, Tim44 family [Rhodobacteraceae bacterium KLH11] gi|221535752|gb|EEE38740.1| transporter, Tim44 family [Rhodobacteraceae bacterium KLH11] Length = 219 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 105/229 (45%), Gaps = 18/229 (7%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRD----ERGIIT 61 M+S +L+ A I F+ L+L+ VLG + G EKP + +RD R Sbjct: 1 MNSPLIQLLVLAGIAIFLILRLKSVLGTREGFEKP--------PLQQQRDTNDARRDFEV 52 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 + G D D + E L + R V F +F+ AR +YE IV F +G Sbjct: 53 IEGGPDHDITDHVAEDSEQAETLTAMKR----VEPSFSVSEFVQGARGAYEMIVMGFEKG 108 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIR 179 + I+ + V+ F ++ R+ +++ +G+ + + + +++T IT+R Sbjct: 109 NLDEIQPFLSEEVFDTFVSVVADREDKGLTIEAEFIGVRETTLADVKFDKDTNQAEITMR 168 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 +G+ S D+ +I +P + D WTF R + +PNW+L++T Sbjct: 169 FIGELTSVVRDRGGDIIEGNPNTVKRQKDSWTFARVMGLDDPNWLLVAT 217 >gi|126734398|ref|ZP_01750145.1| import inner membrane translocase, subunit Tim44 [Roseobacter sp. CCS2] gi|126717264|gb|EBA14128.1| import inner membrane translocase, subunit Tim44 [Roseobacter sp. CCS2] Length = 220 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 98/225 (43%), Gaps = 9/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+LRGVLG + G EKP K D + G Sbjct: 1 MNSPLIQLLVLAGIAVFLILRLRGVLGTREGFEKPAVTRPEPSSRVGKPD---FDVIEGG 57 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D I E G+ K + D+ F+ +FL AR +YE I+ +F G + + Sbjct: 58 PDLDITDHIEE----GSDSAKALADMKRADPSFNVSEFLGGARGAYEMILMAFENGDLDS 113 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183 I + VY+ F + R+ V + +GI DM + A ++ +++R + Sbjct: 114 IVPFISEDVYEAFASVVDERQRQGLTVDAKFIGISDMTLTEAVFDDFSKEGEVSVRFKSE 173 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S D +I + D WTF R + +PNW L++T Sbjct: 174 MTSVVRDNAGDIIEGSETEIKRQKDTWTFARKMDADDPNWRLVAT 218 >gi|148556731|ref|YP_001264313.1| import inner membrane translocase subunit Tim44 [Sphingomonas wittichii RW1] gi|148501921|gb|ABQ70175.1| import inner membrane translocase, subunit Tim44 [Sphingomonas wittichii RW1] Length = 226 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 99/219 (45%), Gaps = 13/219 (5%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK-KDNL 71 I++ A + FV +L VLG++TG+E+ + G+ +N Sbjct: 14 IVILAMVFLFVAFRLWSVLGRRTGHEQTIARPAEAAPAPIG----------AGRSLPENA 63 Query: 72 DSINELFP--IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + P + R +R I S FD FL AR++Y I+++++ G A+ +L Sbjct: 64 TPVLPAKPAVVEPRAEAGVRAIQSADGGFDAAQFLEGARSAYRMILEAYWRGDEEALRRL 123 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 D VY+ F +++ R+ + + + LV I+ I A + T +T+R + + Sbjct: 124 TDDDVYEAFAAAITERREANEVLDNRLVSIESAVIEQARMNGQTANVTVRFDADIAAVTR 183 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 D + +++ D+WTF R++ +PNW L+ T Sbjct: 184 DGEGNVVAGSLTDAVPTHDVWTFSRHVRSDDPNWTLVET 222 >gi|254707406|ref|ZP_05169234.1| calcium-binding EF-hand [Brucella pinnipedialis M163/99/10] Length = 164 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 83/149 (55%), Gaps = 4/149 (2%) Query: 20 TFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG++TGNEKP ++ S + + +++L + + + +I+ Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164 + F ++ R+ + V+SS VGID I Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGI 163 >gi|110677837|ref|YP_680844.1| hypothetical protein RD1_0444 [Roseobacter denitrificans OCh 114] gi|109453953|gb|ABG30158.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 220 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 104/218 (47%), Gaps = 10/218 (4%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 +L+ A I F+ +L+ VLG + G F + + R + G D D Sbjct: 9 LLVLAGIAVFLIFRLKNVLGTRDG----FEPGPAQAPTSDRSPTRDFEVIEGGPDLDITD 64 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 ++E L + R + F+ +FL AR +YE IV + G++ I+ + Sbjct: 65 HVDEHSDAAEALANMKR----LEPGFNVTEFLGGARGAYEMIVMGYENGELADIQPFLAE 120 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISASYD 190 +Y+ F D ++ R+ ++++ +G+ ++K+I+A+++ +T +TIR + SA + Sbjct: 121 DIYESFVDGVAAREDQGLTIEANFIGVRELKLIDATLDPDTNEAELTIRFTAELTSAVRN 180 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + +I + D W+F R + +PNW+L+ST Sbjct: 181 SEGEIIEGSLTDVKRQKDTWSFARPMGSDDPNWILVST 218 >gi|21328722|gb|AAM48728.1| conserved hypothetical protein [uncultured marine proteobacterium] Length = 216 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/219 (23%), Positives = 106/219 (48%), Gaps = 13/219 (5%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII-TLGKGKKKDNL 71 +L A I ++ L+LRGVLG + G+E P + + ++ D+R + + G +D Sbjct: 6 LLALAGIAIYLILKLRGVLGTRDGHEGPRAN------IVARADDRPKLEVIDGGPDQDIT 59 Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 D E + + + + F +FL ++++YE I+ +F G + +++ ++ Sbjct: 60 DHAAE----DSDAARALLGMKHAEPSFSVTEFLYGSKSAYEMILMAFENGDLGSVKAFLN 115 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASY 189 VY F + RK+ ++++ +G+ D ++ A+ + N I +R + + S Sbjct: 116 QDVYDAFASVVEARKAQGLSIEAEFIGVRDTGLMGATFDPKTNAAEIDVRFICELTSVLR 175 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + D +I + + D+WTF R + +PNW LI+T Sbjct: 176 NSDGDIIEGNETEVKRQRDVWTFGRTMGADDPNWQLIAT 214 >gi|261314892|ref|ZP_05954089.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M163/99/10] gi|261303918|gb|EEY07415.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M163/99/10] Length = 168 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 83/149 (55%), Gaps = 4/149 (2%) Query: 20 TFFVFLQLRGVLGKKTGNEKP----FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG++TGNEKP ++ S + + +++L + + + +I+ Sbjct: 19 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 78 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 79 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 138 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164 + F ++ R+ + V+SS VGID I Sbjct: 139 EGFVAAIDEREKRGETVRSSFVGIDKAGI 167 >gi|163732954|ref|ZP_02140398.1| hypothetical protein RLO149_09850 [Roseobacter litoralis Och 149] gi|161393489|gb|EDQ17814.1| hypothetical protein RLO149_09850 [Roseobacter litoralis Och 149] Length = 220 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 104/218 (47%), Gaps = 10/218 (4%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 +L+ A I F+ +L+ VLG + G F S + R + G D D Sbjct: 9 LLVLAGIAVFLIFRLKNVLGTRDG----FEPGPSQTPMSDSAPMRDFEVIEGGPDLDITD 64 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + E + + + ++ + F+ +FL AR +YE IV + G++ I+ + Sbjct: 65 HVEE----NSDAAEALANMKRLEPGFNVTEFLGGARGAYEMIVMGYENGELADIQPFLAE 120 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI--EENTVYITIRIVGQFISASYD 190 +Y+ F D ++ R+ +++S +G+ ++K+++A++ E N +TIR + SA + Sbjct: 121 DIYESFVDGVAAREDQGLTIEASFIGVRELKLMDATLDPETNEGELTIRFTAELTSAVRN 180 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + +I + D W+F R + +PNW+L+ST Sbjct: 181 SEGEIIEGSLTEVKRQKDTWSFARPMGSDDPNWILVST 218 >gi|323135818|ref|ZP_08070901.1| import inner membrane translocase subunit Tim44 [Methylocystis sp. ATCC 49242] gi|322398909|gb|EFY01428.1| import inner membrane translocase subunit Tim44 [Methylocystis sp. ATCC 49242] Length = 233 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/231 (23%), Positives = 102/231 (44%), Gaps = 14/231 (6%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 D +++FA + FV +LR VLG + + P F + + G L D Sbjct: 9 DPSLVVFAALAVFVIWKLRSVLGVRVDRDAPPPAQFQPR----RPSPAGATPLPGAAPLD 64 Query: 70 NLDSINELFPI--------GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 + + P G + I + FD + FL+ AR +Y+ IV +F G Sbjct: 65 DGAAARRNVPASWEGVAEKGGAAASGLDAIAAADPRFDGQAFLDGARRAYDMIVSAFARG 124 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 + L+ V+ F ++ R+ N + ++++++ ID + +A IT+R Sbjct: 125 DRDQLRPLLSKEVFDGFAAEIARREENGETMETAVIAIDSALVESARAAPRLNEITVRFA 184 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + ++ +K+ I I V+++WTF R+ S+PNW L++T+ E Sbjct: 185 TRLMNLRRNKEGETIEGGHTI--PVVELWTFARDPRASDPNWKLVATRPAE 233 >gi|149185516|ref|ZP_01863832.1| hypothetical protein ED21_20864 [Erythrobacter sp. SD-21] gi|148830736|gb|EDL49171.1| hypothetical protein ED21_20864 [Erythrobacter sp. SD-21] Length = 218 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 108/225 (48%), Gaps = 13/225 (5%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEK-PFSGFFSGKYVFSKRDERGIITLGKG---K 66 + I++ A I F+ L+L VLG+++ +E+ P F ER + + Sbjct: 3 YEIVILAAIAAFLGLRLYSVLGERSEHEEEPARHRFDAPDAVPPAAERPAAPARESVRLR 62 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 DN S NE +R I S FD FL A+ +Y I+++F++G + Sbjct: 63 SVDNASSANE---------NAIRAIASADPRFDLLAFLEGAKAAYGMILEAFWKGDKDTL 113 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 L D VY F+ ++ R + +++++ LV I+D I +A ++ T I++ V S Sbjct: 114 RDLTDDDVYAGFSGAIDARDTAGESLENRLVRIEDATIHSAELDNRTARISVLFVSDIAS 173 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + DKD +I+ + + DIWTF RN+ +PNWVL T G Sbjct: 174 LTRDKDGNVIAGSLDDAVESRDIWTFTRNVDAMDPNWVLDETDQG 218 >gi|159045985|ref|YP_001534779.1| import inner membrane translocase [Dinoroseobacter shibae DFL 12] gi|157913745|gb|ABV95178.1| import inner membrane translocase [Dinoroseobacter shibae DFL 12] Length = 221 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 107/228 (46%), Gaps = 14/228 (6%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEK---PFSGFFSGKYVFSKRDERGIITL 62 M+S IL+ + F+ L+LR VLG + G EK P G + V +RD + Sbjct: 1 MNSNMLQILVLLGVAVFLILRLRSVLGTREGFEKKPVPLDG--PERDVTPRRD---FEVI 55 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 G D D + P G+ K + + F+ +FL A+ +YE I+ SF G Sbjct: 56 EGGPDTDITDHV----PDGSDSAKALAAMKMAEPGFNVTEFLGGAKGAYEWILMSFENGD 111 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRI 180 + ++ + + + F++ + R V++ VG+ + ++ A+ + +T +T+R Sbjct: 112 MDDVQGFLSEELSEAFSEVIEQRNEQGLTVEAEFVGVRETTLVEAAFDRDTREGEVTVRF 171 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 VG+ + + ++ DP + D+WTF R + +PNW L++T Sbjct: 172 VGELTFVVRNAEGEIVEGDPTEIKRQKDVWTFARVMGSDDPNWRLVAT 219 >gi|148259158|ref|YP_001233285.1| import inner membrane translocase, subunit Tim44 [Acidiphilium cryptum JF-5] gi|326402311|ref|YP_004282392.1| putative transporter [Acidiphilium multivorum AIU301] gi|146400839|gb|ABQ29366.1| import inner membrane translocase, subunit Tim44 [Acidiphilium cryptum JF-5] gi|325049172|dbj|BAJ79510.1| putative transporter [Acidiphilium multivorum AIU301] Length = 221 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/219 (23%), Positives = 100/219 (45%), Gaps = 6/219 (2%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 I+L A + F+ L+LR VLG++TG E+P + + G + G + + Sbjct: 9 IVLLALVAGFLVLRLRSVLGRRTGYERPPMPEPTAAGGMQRPG--GPVIEGVAEPPRSTR 66 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + T + + + I FDP FL+ A S+ IV +F G + A+ L+ Sbjct: 67 PVPAPH---TVVGQTLARIAQAERGFDPARFLDGAEASFRRIVLAFAAGDLAALRPLLTP 123 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 V+ F +++ R + + +V I + I A + I +R V + + D+ Sbjct: 124 GVFATFEQAVAQRAEAGETQHTEIVRIVEATIDEAELLGGEAVIVVRFVSDQQNYTRDRQ 183 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 +I+ E +++D+W+F +++ ++P W L + + G Sbjct: 184 GQVIAGT-EAMTEIVDLWSFEKSLGAADPTWRLAAARSG 221 >gi|114328998|ref|YP_746155.1| transporter [Granulibacter bethesdensis CGDNIH1] gi|114317172|gb|ABI63232.1| transporter [Granulibacter bethesdensis CGDNIH1] Length = 231 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 107/227 (47%), Gaps = 25/227 (11%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYV-----FSKRDERGIITLGKGKK 67 ++L I F+ L+LR VLG++ G E+P G+ R R + + + Sbjct: 16 LVLLGMIAVFLVLRLRSVLGRRVGFERPEVPANQGQTGNRIPGLPVRLRRPDAAVAEART 75 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 D+ + + R+ +V R FD FLN A ++ IV ++ +G+ A+ Sbjct: 76 YVLPDASSPTGQVLARMKEVDRS-------FDAVRFLNNAEQAFRVIVTAYAQGEREALR 128 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 L+ + F ++ R+ + ++ + I D++I NA +E+ +TIR F+S Sbjct: 129 PLLTEATFTIFCQAIDAREQDGARQQTEIQSIRDIRIENARLEQTQAALTIR----FVS- 183 Query: 188 SYDKDNLLI--SSDP----EIFGKVIDIWTFVRNIPPSNPNWVLIST 228 D+ N+++ + +P E +++D+WTF R++ +P W L T Sbjct: 184 --DQHNVMLNRTGEPVEGVEGLTEIVDVWTFERDLASRDPTWRLSGT 228 >gi|294010816|ref|YP_003544276.1| hypothetical protein SJA_C1-08300 [Sphingobium japonicum UT26S] gi|292674146|dbj|BAI95664.1| conserved hypothetical protein [Sphingobium japonicum UT26S] Length = 218 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 116/228 (50%), Gaps = 25/228 (10%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 ++I++ A I F+ L+L VLGK+TG+E+ + +ER +T+ + + Sbjct: 2 YVIVILAMIAGFLALRLYSVLGKRTGHEQ--------EPALRPAEERAKVTIVQPR---- 49 Query: 71 LDSINELFPIGTRLNKVM---------RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 + E+ RL++ + R +++ FD F+ A+ +Y+ ++++F+ G Sbjct: 50 --PVPEMAGDSVRLSEGLIAPGGEAGVRALIAADRSFDVPQFVEGAKAAYKMVLEAFWRG 107 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 +E L D+ V F ++++ R++ + + LV I+ ++I++A + I++R Sbjct: 108 DRQELEWLCDADVLASFEEAIAAREAEGHVLDNRLVRIEKVQIVDAGVTGRMAEISLRFE 167 Query: 182 GQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + + D+D N++ S + G DIWTF R++ ++PNW L T Sbjct: 168 ADIAAVTRDRDGNVVAGSLTDAVG-TNDIWTFTRDLRSTDPNWKLSET 214 >gi|4098584|gb|AAD00329.1| unknown [Rhodobacter capsulatus] Length = 183 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 85/166 (51%), Gaps = 6/166 (3%) Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 G D +D + P G+ + + V F+ FL ++ +YE I+ +F G + Sbjct: 20 GPDHDIIDHV----PEGSDAAVALAQMKRVEPTFNVGAFLQGSKVAYEMILMAFERGDLS 75 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVG 182 A+ + + V + F +++ R+ V++S +G+ ++ + AS E++ +T+R G Sbjct: 76 AVRRFLAPEVLEAFETAVADRQRQGLTVEASFLGLRELVLTEASFNESSREAEVTVRFGG 135 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + IS + D + ++ DP+ K D WTF R + S+PNW L++T Sbjct: 136 ELISVARDANGQIVEGDPKAPRKQRDSWTFARVMGSSDPNWQLVAT 181 >gi|326386373|ref|ZP_08207996.1| import inner membrane translocase, subunit Tim44 [Novosphingobium nitrogenifigens DSM 19370] gi|326209034|gb|EGD59828.1| import inner membrane translocase, subunit Tim44 [Novosphingobium nitrogenifigens DSM 19370] Length = 218 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/225 (24%), Positives = 105/225 (46%), Gaps = 16/225 (7%) Query: 16 FAFITFFVFLQLRGVLGKKT-GNEKPFSGFFSG-------KYVFSKRDERGIITLGKGKK 67 A I F+ L+L VLG++ G+++P + + SK E+ +T Sbjct: 1 MAMIALFLGLRLYAVLGRRAEGSDEPLRRRVEQPDPQAALRAMPSKLPEKPAMT-----G 55 Query: 68 KDNLDSIN-ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + +L + F G +R I++ FD FL A+ +Y ++D+F+ G A+ Sbjct: 56 RPSLPTAEPSAFDAGAETG--IRAIIAADRRFDVALFLTGAKAAYGMVLDAFWRGDKDAL 113 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 +L + VY+ F ++ RK + V + L+ +DD +I++A I +R V + Sbjct: 114 AQLCERSVYESFAAAIDARKQAGETVDARLIRVDDARIVSADFNAPVARIAVRFVADVAT 173 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + + + +++ + + D+WTF R++ +P+W L T G Sbjct: 174 VTRNTEGTVVAGSLDDAIESRDLWTFSRDLTSRDPDWQLDETDQG 218 >gi|73667391|ref|YP_303407.1| membrane translocase, subunit Tim44 [Ehrlichia canis str. Jake] gi|72394532|gb|AAZ68809.1| membrane translocase, subunit Tim44 [Ehrlichia canis str. Jake] Length = 212 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 101/217 (46%), Gaps = 18/217 (8%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 + ++A + F+F +L LGK +G + I++ ++ D Sbjct: 4 LAIYALLAAFIFFRLYNSLGKTSG--------------LQPNNHSQAISIVVEDTQEYDD 49 Query: 73 SINELFPIGTRLNKVMRDIVSVYT----DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 + E+ + NK + I++ +F K F++ + ++E I+ +F EG VH + Sbjct: 50 AEIEIESVMDTCNKDEKSIINQIKKKDKEFSLKHFMDGSIKAFEIIIKAFNEGNVHILSM 109 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L+D+ +Y F++ + RK + +V + KII + N YIT++ + + I+ Sbjct: 110 LLDTNLYNSFSEEIENRKKLNHVYEDIIVSVTSHKIIKLDLSGNIAYITVKFITEQINFV 169 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 DKD+ +I K+ D+WTF ++I SN W L Sbjct: 170 KDKDDNVIQGSTSKINKIEDVWTFRKDITLSNKKWYL 206 >gi|83944953|ref|ZP_00957319.1| hypothetical protein OA2633_09999 [Oceanicaulis alexandrii HTCC2633] gi|83851735|gb|EAP89590.1| hypothetical protein OA2633_09999 [Oceanicaulis alexandrii HTCC2633] Length = 219 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 13/221 (5%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL FA + F+ ++L VLGK +G + + V ++ ER G G ++ Sbjct: 6 ILFFAGLAVFLGVRLYMVLGKSSGR--------AAEDVEREQRERAEAA-GMGAPPPSMR 56 Query: 73 SINELFPIGTRL----NKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 + P + + + I FDP +F AR +YE IV ++ +G A+E Sbjct: 57 PQADETPFAAQFAGPAGEGLMQIAQHDPAFDPDEFRKGARAAYEMIVLAYAKGDREALEP 116 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L+ RV + ++ +++ R+ V + + I +I AS+ +N + I + S + Sbjct: 117 LLTERVKKAYDQAIAAREEKNWTVTTEIDRIKSAEISEASLNDNRAKVKIAFSVELASET 176 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + ++ D V +IW+F R++ NPNW L K Sbjct: 177 RNAQGDVVEGDLTTLKTVDEIWSFERDVTSENPNWRLSGVK 217 >gi|68171233|ref|ZP_00544637.1| Mitochondrial import inner membrane translocase, subunit Tim44 [Ehrlichia chaffeensis str. Sapulpa] gi|88658281|ref|YP_507053.1| tim44-like domain-containing protein [Ehrlichia chaffeensis str. Arkansas] gi|67999353|gb|EAM85998.1| Mitochondrial import inner membrane translocase, subunit Tim44 [Ehrlichia chaffeensis str. Sapulpa] gi|88599738|gb|ABD45207.1| tim44-like domain protein [Ehrlichia chaffeensis str. Arkansas] Length = 212 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/215 (24%), Positives = 102/215 (47%), Gaps = 14/215 (6%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 + ++AF+ F+F +L LGK +G + + + I + ++ D D Sbjct: 4 LAIYAFLAAFIFFRLYHSLGKTSGLQS------------NSHSQTISIIMEDTQEHDTAD 51 Query: 73 -SINELFPIGTRLNK-VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 I+ + I +K ++ I +F + F++ + ++E I+ +F EG +H + L+ Sbjct: 52 IDIDSVMEICNENDKSIINHIKKKDKEFSLRHFMDGSIKAFEIIIKAFNEGNIHILSMLL 111 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 D+ +Y F + + RK+ + + +V I KI S+ N YIT++ + + I+ D Sbjct: 112 DTNLYNSFVEEIENRKALGQLYEDIIVSITSHKITKLSLSGNIAYITVKFISEQINFVKD 171 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 KD+ ++ K+ D WTF ++ SN W L Sbjct: 172 KDDNILQGSTSKINKIEDTWTFRKDTTLSNKKWYL 206 >gi|89052682|ref|YP_508133.1| import inner membrane translocase, subunit Tim44 [Jannaschia sp. CCS1] gi|88862231|gb|ABD53108.1| import inner membrane translocase subunit Tim44 [Jannaschia sp. CCS1] Length = 235 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 10/214 (4%) Query: 17 AFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINE 76 A I F+ L+LR VLG + G EKP S S+RD R + +G D++ + Sbjct: 28 AGIAIFLILRLRSVLGTRDGFEKPPVAPGS-----SRRDVRRDFEVIEGGPDDDILDHVD 82 Query: 77 LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136 G+ K + + F +FL AR +YE I+ +F G V + + V + Sbjct: 83 D---GSDSAKALAAMKMAEPGFRVGEFLGGARQAYEMILMAFERGDVDGLRPFLADDVLE 139 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQFISASYDKDNL 194 F + R ++++ VG+ ++ + A+ + + +T+R +G+ S + D Sbjct: 140 TFETVIDQRNEQGLSIEAEFVGVREITLQEATFDRSAGVGEVTVRFIGELTSVVRNADGE 199 Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 +I D + D+WTF R + +PNW L++T Sbjct: 200 IIEGDATEIKRQRDVWTFARKMGADDPNWALVAT 233 >gi|114769764|ref|ZP_01447374.1| transporter, Tim44 family protein [alpha proteobacterium HTCC2255] gi|114549469|gb|EAU52351.1| transporter, Tim44 family protein [alpha proteobacterium HTCC2255] Length = 218 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/223 (24%), Positives = 104/223 (46%), Gaps = 17/223 (7%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEK---PFSGFFSGKYVFSKRDERGIITLGKGKK 67 F +++ I FV L+LR VLG ++G E P F K + D + Sbjct: 6 FQLVILGVIALFVILRLRSVLGTRSGFEPTNVPKPTFQKEKTPTEENDNK--------ID 57 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 +D D ++ P G L+++ + ++F +F+ A +YE I+ +F EG + Sbjct: 58 RDIADYVSVDSPSGKALSQMKK----AESNFLVTEFIQGAGQAYEMILIAFEEGDRDGLR 113 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFI 185 + VY F ++ R+ + N+ ++ +G+ ++K+ +A + IT+ +V + Sbjct: 114 PFLADDVYDSFESVITEREKAQLNIDATFIGLREIKLTSAEYDWRAKEGEITLSLVAELT 173 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + + ++ +I D K D WTF R + NPNW L++T Sbjct: 174 TVVKNINDEIIEGDKNKIKKQKDTWTFSRIMGNDNPNWTLVAT 216 >gi|162147851|ref|YP_001602312.1| transporter protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786428|emb|CAP56010.1| putative transporter protein [Gluconacetobacter diazotrophicus PAl 5] Length = 228 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 16/225 (7%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 F ++LF + F+ L+LR +LG + G E S G + G+ + Sbjct: 12 FDLVLFGLVAAFLALRLRSILGTRVGVEP--------APPPSAVPRPGPVIEGRAEPPAT 63 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 L + P TR+ +V+ I DF P FL ++ IV +F G V + + + Sbjct: 64 LTDYDVPAP-ETRVGQVLAAIAQQERDFVPAQFLKGVEAAFRQIVLAFAAGDVAMLRERL 122 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE----NTVYITIRIVGQFIS 186 + + F ++ +R+ + + K+ + I + I++A+IEE I +RIV IS Sbjct: 123 TANAFSAFEAAIRSREQSGEIQKAEVRAIASLAIVDAAIEERDGATHARIDVRIVSDQIS 182 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVR--NIPPSNPNWVLISTK 229 + DKD ++ + + D+WTF R + S W L +++ Sbjct: 183 LTSDKDGHPVAGT-DAVTEFSDLWTFERPLGVAISGAAWRLAASR 226 >gi|209542471|ref|YP_002274700.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter diazotrophicus PAl 5] gi|209530148|gb|ACI50085.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter diazotrophicus PAl 5] Length = 226 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 16/225 (7%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 F ++LF + F+ L+LR +LG + G E S G + G+ + Sbjct: 10 FDLVLFGLVAAFLALRLRSILGTRVGVEP--------APPPSAVPRPGPVIEGRAEPPAT 61 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 L + P TR+ +V+ I DF P FL ++ IV +F G V + + + Sbjct: 62 LTDYDVPAP-ETRVGQVLAAIAQQERDFVPAQFLKGVEAAFRQIVLAFAAGDVAMLRERL 120 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE----NTVYITIRIVGQFIS 186 + + F ++ +R+ + + K+ + I + I++A+IEE I +RIV IS Sbjct: 121 TANAFSAFEAAIRSREQSGEIQKAEVRAIASLAIVDAAIEERDGATHARIDVRIVSDQIS 180 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVR--NIPPSNPNWVLISTK 229 + DKD ++ + + D+WTF R + S W L +++ Sbjct: 181 LTSDKDGHPVAGT-DAVTEFSDLWTFERPLGVAISGAAWRLAASR 224 >gi|254295483|ref|YP_003061506.1| import inner membrane translocase subunit Tim44 [Hirschia baltica ATCC 49814] gi|254044014|gb|ACT60809.1| import inner membrane translocase subunit Tim44 [Hirschia baltica ATCC 49814] Length = 200 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 24/216 (11%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 D +++FA + FFV +L VLG KTG E P S + KR +G + Sbjct: 2 DIELIIFAAVAFFVLYRLYSVLGTKTGAEPPPSVV---REATQKRKN------SEGSDES 52 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 N+ F G + M +I + + F P DF +++ +YE IV++F EG + L Sbjct: 53 NVTPFRPSF-TGPGAS-AMEEISQIDSTFSPSDFTRKSKKAYEMIVEAFAEGDKETLSNL 110 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + VY+ + ++ R+ N L+ + +I +A + + +GQ +S S+ Sbjct: 111 LVDDVYEAYVSAIDEREQNNTE-PLRLMRLKSAEIADAELLDGD-------IGQ-VSVSF 161 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 + SD E +IWTF R++ SNP W+L Sbjct: 162 EAQ----LSDGENLRTAKEIWTFERSLKSSNPAWLL 193 >gi|218460136|ref|ZP_03500227.1| hypothetical protein RetlK5_11796 [Rhizobium etli Kim 5] Length = 121 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 6/119 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG--IITLG 63 M S DF+ L F +F QLR VLG++TGNEKP ++ + ++TL Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60 Query: 64 K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + G+ +D +I+ + GT LN+ +R + F+PK+FLN AR +YE IV ++ Sbjct: 61 RRDATGEDEDRFAAIDAVAAPGTPLNESLRALNKADPSFNPKEFLNGARMAYEMIVMAY 119 >gi|161170260|gb|ABX59230.1| uncharacterized protein conserved in bacteria [uncultured marine bacterium EB000_55B11] gi|297183789|gb|ADI19912.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 218 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/224 (23%), Positives = 102/224 (45%), Gaps = 19/224 (8%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 F +++ I FV L+LR VLG ++G F K F K K ++N Sbjct: 6 FQLVILGVIALFVILRLRSVLGTRSG----FEPTNVPKPTFQKE---------KTPTEEN 52 Query: 71 LDSIN----ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + I+ + + + K + + ++F +F+ A +YE I+ +F EG + Sbjct: 53 DNKIDRDIADYVSVDSSSGKALSQMKKAESNFLVTEFIQGAGQAYEMILIAFEEGDRDGL 112 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQF 184 + VY F ++ R+ + N+ ++ +G+ ++K+ +A + IT+ +V + Sbjct: 113 RPFLADDVYDSFESVITEREKAQLNIDATFIGLREIKLTSAEYDWRAKEGEITLSLVAEL 172 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + + ++ +I D K D WTF R + NPNW L++T Sbjct: 173 TTVVKNINDEIIEGDKNKIKKQKDTWTFSRIMGNDNPNWTLVAT 216 >gi|330813377|ref|YP_004357616.1| putative translocase transmembrane protein with Tim44 Pfam domain [Candidatus Pelagibacter sp. IMCC9063] gi|327486472|gb|AEA80877.1| putative translocase transmembrane protein with Tim44 Pfam domain [Candidatus Pelagibacter sp. IMCC9063] Length = 193 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 93/210 (44%), Gaps = 35/210 (16%) Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINEL 77 I F+FL+LR VLGK N P F+ K +D+ + E Sbjct: 1 MIAGFIFLRLRNVLGKGADNS-PIKPNFANK------------------SRDDFSFVKE- 40 Query: 78 FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD 137 + T NK + FD F A +YE I+++F +G +++ L+ ++Y D Sbjct: 41 --VRTESNKPV---------FDEASFKKGAEYAYEMIINAFAKGDKQSLKPLLTKKLYLD 89 Query: 138 FNDSLSTRKSNEKNVKSSL--VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 F + R NEK + SSL +GI+ M I S +T R + Q I+ ++ + Sbjct: 90 FEKIIDDR--NEKKLTSSLTFIGIEKMSIDKVSNVNTKYKVTARFISQIINCLKNEKGEV 147 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 + D E D+W+F R++ S+P W L Sbjct: 148 VEGDAEKTKTTTDVWSFERDLKDSDPTWYL 177 >gi|269959143|ref|YP_003328932.1| Tim44-like domain containing protein [Anaplasma centrale str. Israel] gi|269848974|gb|ACZ49618.1| Tim44-like domain containing protein [Anaplasma centrale str. Israel] Length = 217 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 103/222 (46%), Gaps = 16/222 (7%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG-NEKP---FSGFFSGKYVFSKRDERGIITLGKGKKK 68 + ++AF+ F+F +L G LGK + N +P + G SG+ S G K + Sbjct: 4 LAIYAFVAAFIFFRLYGSLGKASSVNFQPSAIYPGQVSGEQAASD---------GSVKPQ 54 Query: 69 D-NLDSI-NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 D +DS+ + P+ +++ V I + DF K F+ + ++EAIV + +G + Sbjct: 55 DIPVDSVVADSAPVD-QISSVFEAIKARNKDFSVKHFIEGSAAAFEAIVSALNQGNTELL 113 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 L++ +Y F + R+ + + +V I K+ NA +E N IT++ V + I+ Sbjct: 114 SSLLNRHMYNSFVKEVERRRDAGRVHEDVVVSITSQKVTNAELEGNFATITVQFVTEQIN 173 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 D + ++ + D W F R++ + W L ST Sbjct: 174 VVRDVEGQVVDGSTSKVNVIEDTWKFERDVTAAGRRWYLAST 215 >gi|296535049|ref|ZP_06897314.1| Tim44 domain protein [Roseomonas cervicalis ATCC 49957] gi|296264626|gb|EFH10986.1| Tim44 domain protein [Roseomonas cervicalis ATCC 49957] Length = 165 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 1/148 (0%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 T + + ++ I FDP FL A ++ IV +F G + L+ Y F + Sbjct: 17 TPVGQALQRIRQADAGFDPYAFLGGAEGAFRMIVTAFAAGDRATLRDLLSEDTYAGFEQA 76 Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201 ++ R+S + ++ + G+ +M I A + + IT+RIV ++ + +S E Sbjct: 77 ITARESAGERQRTEIHGVHEMAIDAADLRGSVADITLRIVSDQVNLTTGPQGEAVSGT-E 135 Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTK 229 ++ D+WTF R++ +P W L+ T+ Sbjct: 136 AVTELTDVWTFQRDLRSGDPTWKLVGTQ 163 >gi|296115110|ref|ZP_06833751.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter hansenii ATCC 23769] gi|295978211|gb|EFG84948.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter hansenii ATCC 23769] Length = 227 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 48/224 (21%), Positives = 103/224 (45%), Gaps = 17/224 (7%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 ++ + F+ L+LRG+LGK+ G E + + + +I +GK + Sbjct: 12 LVFLGLVAVFLVLRLRGILGKRVGAEP------AARTMQPTPTPAPVI---EGKPEPVAP 62 Query: 73 SINELFPIG-TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 + P TR+ +V+ I + F P F+ + +++ IV ++ G + + + + Sbjct: 63 ATTYDIPTPDTRVGQVLSAIAARQQGFTPDGFIRQVEDAFRQIVQAYAVGDIETLRQHLT 122 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT----VYITIRIVGQFISA 187 + F ++ +R+ + ++S + I DM II+A + + I +RIV +S Sbjct: 123 ESTFTAFEAAIVSRQQAHETMRSEIRDITDMAIIDAELSPDVSVPYARIEVRIVSDQVSV 182 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTK 229 + D++ +S + + D+WTF R + + P W L +++ Sbjct: 183 TLDQNGQPVSGV-DAVTEFSDLWTFERILGAATPGAQWRLGASR 225 >gi|114571519|ref|YP_758199.1| import inner membrane translocase Tim44 [Maricaulis maris MCS10] gi|114341981|gb|ABI67261.1| import inner membrane translocase, subunit Tim44 [Maricaulis maris MCS10] Length = 206 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 64/132 (48%) Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153 V T FDP A+N+Y IV++F G +E L+ V + ++ R + V+ Sbjct: 69 VDTRFDPTAVKEGAQNAYVMIVEAFAAGDRKVLEPLLAPNVLDRYTTAIDQRADRGETVR 128 Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213 + + + D+ II A +NT I +R V + + + D D+ +++ D V + W F Sbjct: 129 TEVERLKDVDIIEAGHADNTARIKVRFVAEIATETRDSDDAVVAGDIGRLSTVTEDWVFE 188 Query: 214 RNIPPSNPNWVL 225 R +PNWVL Sbjct: 189 RRTNKGDPNWVL 200 >gi|262277816|ref|ZP_06055609.1| import inner membrane translocase subunit Tim44 [alpha proteobacterium HIMB114] gi|262224919|gb|EEY75378.1| import inner membrane translocase subunit Tim44 [alpha proteobacterium HIMB114] Length = 204 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/213 (23%), Positives = 95/213 (44%), Gaps = 29/213 (13%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 I+L A + F+ L+LR LGK N P F+ Sbjct: 10 IILLAIMAGFILLRLRSTLGKGADN-MPMKARFTQA------------------------ 44 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 NE F +++ +D T FD K F+ A +YE I+++F +G A++ L+ Sbjct: 45 QSNEEFTKPIIEDEIKQDT----TKFDEKIFIKGAEAAYEIIINAFAKGDRKALKPLLTK 100 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 +Y++F + R+S + + + S +GI + KI++ ++ + + V + ++ Sbjct: 101 DLYKNFEGVIKERESKKISSQMSFIGIKETKILDIDNKDTFYKVKTKFVSEIVNCLKSDK 160 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 +I +PE V D+W F +++ ++P W L Sbjct: 161 GEVIEGNPEEIKLVTDVWVFEKDLKNNDPTWYL 193 >gi|58040316|ref|YP_192280.1| putative translocase transmembrane protein [Gluconobacter oxydans 621H] gi|58002730|gb|AAW61624.1| Putative translocase transmembrane protein [Gluconobacter oxydans 621H] Length = 265 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 107/242 (44%), Gaps = 26/242 (10%) Query: 12 LILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFSKRDER--------- 57 L++LF + + ++L VLG++ G E+P +GF G + D Sbjct: 24 LVVLF-VLAVALGVRLYRVLGRRVGMQGVRQERPGAGFGPGAQKGAAPDAARPSIPPPLP 82 Query: 58 GIITLGKGKKKDNLDSI-----NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 G + G D E+ TR+ V+ +I SV+ F P FL EA ++ Sbjct: 83 GQVAGKPGAAPGVFDQAVPDVAYEIPAPATRVGTVLGEIGSVFPGFSPDGFLKEAEGTFR 142 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA---SI 169 +V +F G A+EKL+ F+ ++ R + +S L GI+ + I++A S Sbjct: 143 QVVPAFAVGDRTALEKLLTPASMDSFSAAIDARVQAGETQRSDLRGIESLSILDAMLVSA 202 Query: 170 EENTVY--ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 E+ T I ++IV + ++ D++ + E + D+W F R S+ W L + Sbjct: 203 EDGTRVGRIEVKIVSRQVNILTDREGEPVVGT-EAVTEFHDLWLFERVAGQSDARWRLAA 261 Query: 228 TK 229 ++ Sbjct: 262 SR 263 >gi|329114333|ref|ZP_08243095.1| Import Inner Membrane Translocase Subunit [Acetobacter pomorum DM001] gi|326696409|gb|EGE48088.1| Import Inner Membrane Translocase Subunit [Acetobacter pomorum DM001] Length = 242 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/221 (23%), Positives = 104/221 (47%), Gaps = 12/221 (5%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 ++L A + F+ L+LR VLGK+ G + P + + R + GK ++ + Sbjct: 28 LVLLALVAAFLVLRLRSVLGKRVGIQ-PVQVQLQVRPDAAPR-----VVEGKPEQAEAAA 81 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + P GTR+ ++ DI F P+ FLN A+ ++ +V ++ +G ++ ++ + Sbjct: 82 EFDIPAP-GTRVGTLLADIRQKDPSFTPQQFLNGAQTAFAQVVGAYAQGNLNVLKTYLTP 140 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN---ASIEENT-VYITIRIVGQFISAS 188 V+ F ++ R + E+ ++ + I + I + +E T I +RIV IS Sbjct: 141 AVFSAFEAGITARTNAEETQRTDVKAIRSLAIEDVRLTPMEAGTAAAIDVRIVSDQISLV 200 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 +K+ ++ + + D+WTF R + + W L + + Sbjct: 201 LNKEGQPVTGT-DAVTEFSDLWTFERLLDVNGSTWRLAAAR 240 >gi|302381470|ref|YP_003817293.1| import inner membrane translocase subunit Tim44 [Brevundimonas subvibrioides ATCC 15264] gi|302192098|gb|ADK99669.1| import inner membrane translocase subunit Tim44 [Brevundimonas subvibrioides ATCC 15264] Length = 214 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 21/219 (9%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 FLI++FA I FV QL VLGKK G + + D + L Sbjct: 5 FLIVIFAVIAAFVLFQLYNVLGKKVGRQ-------------PQDDAKAPPALPATGPDAP 51 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 L + + L + + FDP F++ AR +YE IV + G A++ L+ Sbjct: 52 LRTPG----VDATLLAAAASLRARDPAFDPAKFIDGARQAYETIVRGYAAGDRAALKPLL 107 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF---ISA 187 V F ++ R++ + + + + AS E + +R + + I Sbjct: 108 TPAVLDSFETGIAARETRGETEQVEFLHPPRADLELASAEGDRAVAKVRFLAELRSKIMP 167 Query: 188 SYDKDNLLISSDPEIFG-KVIDIWTFVRNIPPSNPNWVL 225 D+ ++P I + + WTF R++ S+PNWVL Sbjct: 168 PADEATPGAPAEPRIEERRTAEHWTFERSLGASDPNWVL 206 >gi|258541896|ref|YP_003187329.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-01] gi|256632974|dbj|BAH98949.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-01] gi|256636031|dbj|BAI02000.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-03] gi|256639086|dbj|BAI05048.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-07] gi|256642140|dbj|BAI08095.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-22] gi|256645195|dbj|BAI11143.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-26] gi|256648250|dbj|BAI14191.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-32] gi|256651303|dbj|BAI17237.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654294|dbj|BAI20221.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-12] Length = 242 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/223 (23%), Positives = 106/223 (47%), Gaps = 16/223 (7%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 ++L A + F+ L+LR VLGK+ G + P + + R + GK ++ + Sbjct: 28 LVLLALVAAFLVLRLRSVLGKRVGIQ-PVQVKLQVRPDAAPR-----VVEGKPEQAETAA 81 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + P GTR+ ++ DI F P+ FLN A+ ++ +V ++ +G V ++ + Sbjct: 82 EFDIPAP-GTRVGTLLADIRQKDPSFTPQQFLNGAQIAFAQVVGAYAQGNVDVLKTYLTP 140 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSL-----VGIDDMKIINASIEENT-VYITIRIVGQFIS 186 V F ++ R + E+ ++ + + I+D++I + +E T I +RIV IS Sbjct: 141 AVLAAFEAGITARANAEETQRTDVKAIRSLAIEDVRI--SPMEAGTAAAIDVRIVSDQIS 198 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 +K+ ++ + + D+WTF R + + W L + + Sbjct: 199 LVLNKEGQPVTGT-DAVTEFSDLWTFERLLDVNGSTWRLAAAR 240 >gi|295691579|ref|YP_003595272.1| import inner membrane translocase subunit Tim44 [Caulobacter segnis ATCC 21756] gi|295433482|gb|ADG12654.1| import inner membrane translocase subunit Tim44 [Caulobacter segnis ATCC 21756] Length = 198 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/218 (21%), Positives = 92/218 (42%), Gaps = 36/218 (16%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL A + V QL LG++ G ++ E + G G Sbjct: 4 ILFLAAVAAIVLYQLYATLGRRVG----------------RQPEDTPVKAGAGGPA---- 43 Query: 73 SINELFPIGTRLNKVMRD-----IVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 P+ T + V+R + + DFDP F+ AR +YE IV ++ +G ++ Sbjct: 44 ------PVTTDPHPVLRSEGLAALKARQPDFDPAKFMTGARAAYEQIVTAYADGDRETLK 97 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 L+ V +F +++ R++ ++ K + + + + + +T +RI+ + + Sbjct: 98 PLLAPEVMANFEQAMAAREAAGRSEKVEFLTSPRLDLESVDLVGDTAKAVVRILAEVRTR 157 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 + D+ + + ++WTF R + +NPNW+L Sbjct: 158 TKDERGEGVDDR-----RTAELWTFEREVRNANPNWLL 190 >gi|218680118|ref|ZP_03528015.1| import inner membrane translocase subunit Tim44 [Rhizobium etli CIAT 894] Length = 78 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 44/67 (65%) Query: 163 KIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222 +I +A + + IT+RI+ Q ISA+YDK ++LI D E +V D+WTF R+ +PN Sbjct: 8 EITHAETKGSEAQITVRIISQLISATYDKADVLIEGDAENVAEVNDLWTFARDTRSRDPN 67 Query: 223 WVLISTK 229 W L++T+ Sbjct: 68 WKLVATE 74 >gi|167648993|ref|YP_001686656.1| import inner membrane translocase subunit Tim44 [Caulobacter sp. K31] gi|167351423|gb|ABZ74158.1| import inner membrane translocase subunit Tim44 [Caulobacter sp. K31] Length = 199 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 25/222 (11%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 F ++ A + + QL LG++ G + P + + RD + + G Sbjct: 2 FEWIILAALAAVILYQLYATLGRRVGRQ-PEDAPAAVPASVAPRDVKTLEVPG------- 53 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 ++++ L + R DFD FL+ AR +YE IV +F G ++ L+ Sbjct: 54 -EALSGLAALRAR-----------QADFDIGHFLSGARQAYEMIVKAFAAGDRETLKPLL 101 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 + V +F +++ R++ + K+ + + + +E + +RI+ + + S Sbjct: 102 AADVMANFEAAIADREAAGRTEKAEFLATPRTDLDSIKVEGDVARAVVRILAEVRTRSTS 161 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + D + D+WTF R++ NPNW L+ + E Sbjct: 162 A-----AGDAVDDRRTADLWTFERDLKSRNPNWTLVRVDVAE 198 >gi|222474811|ref|YP_002563226.1| hypothetical protein AMF_080 [Anaplasma marginale str. Florida] gi|255002781|ref|ZP_05277745.1| hypothetical protein AmarPR_00408 [Anaplasma marginale str. Puerto Rico] gi|222418947|gb|ACM48970.1| Conserved hypothetical protein [Anaplasma marginale str. Florida] Length = 219 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/226 (22%), Positives = 96/226 (42%), Gaps = 24/226 (10%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 + ++AF+ F+F +L G LGK + S F ++ ++ G++ + Sbjct: 6 LAIYAFVAAFIFFRLYGSLGKAS------SVNFQPSAIYPEQ--------AGGEQAASDG 51 Query: 73 SINEL-FPIGT---------RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 SIN P+ + +++ V I F K F+ + ++EAIV + +G Sbjct: 52 SINSQDIPVSSVVADCASVEQISSVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGN 111 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + L+ ++ F + RKS + +V I K+ +A ++ N+ IT++ V Sbjct: 112 AEFLSSLLSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVT 171 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + I+ D ++ + D W F R+I S W L ST Sbjct: 172 EQINVVRDAGGQVVDGSTSKVNTIEDTWKFARDITTSGRRWYLTST 217 >gi|255003915|ref|ZP_05278716.1| hypothetical protein AmarV_00428 [Anaplasma marginale str. Virginia] Length = 217 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/226 (22%), Positives = 96/226 (42%), Gaps = 24/226 (10%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 + ++AF+ F+F +L G LGK + S F ++ ++ G++ + Sbjct: 4 LAIYAFVAAFIFFRLYGSLGKAS------SVNFQPSAIYPEQ--------AGGEQAASDG 49 Query: 73 SINEL-FPIGT---------RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 SIN P+ + +++ V I F K F+ + ++EAIV + +G Sbjct: 50 SINSQDIPVSSVVADCASVEQISSVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGN 109 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + L+ ++ F + RKS + +V I K+ +A ++ N+ IT++ V Sbjct: 110 AEFLSSLLSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVT 169 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + I+ D ++ + D W F R+I S W L ST Sbjct: 170 EQINVVRDAGGQVVDGSTSKVNTIEDTWKFARDITTSGRRWYLTST 215 >gi|16127971|ref|NP_422535.1| hypothetical protein CC_3741 [Caulobacter crescentus CB15] gi|221236793|ref|YP_002519230.1| transporter [Caulobacter crescentus NA1000] gi|13425513|gb|AAK25703.1| conserved hypothetical protein [Caulobacter crescentus CB15] gi|220965966|gb|ACL97322.1| transporter [Caulobacter crescentus NA1000] Length = 234 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/215 (20%), Positives = 85/215 (39%), Gaps = 29/215 (13%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 F IL A + V QL LG++ G + E +T G Sbjct: 41 FQILFLAAVAALVLYQLYSTLGRRVGRQP----------------EDAAVTAMPGAAPAP 84 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 +D + + + T + + DFDP FL R +YE IV ++ EG + L+ Sbjct: 85 VDPVLQAEGVAT--------LRARQPDFDPARFLMGVRAAYEQIVKAYAEGDRETLTPLL 136 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 V +F ++ R++ + K + + + + +T +RI+ + + + D Sbjct: 137 APDVMDNFERAMVARETAGRTEKVEFLTPPRVDLERVDVVGDTAKAVVRILAEVRTRTKD 196 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 + + + ++WTF R + ++PNW L Sbjct: 197 ERGEGVDDR-----RTAELWTFEREVKSTDPNWHL 226 >gi|42520013|ref|NP_965928.1| hypothetical protein WD0107 [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409750|gb|AAS13862.1| conserved domain protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 216 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/216 (22%), Positives = 101/216 (46%), Gaps = 18/216 (8%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71 ++++A + F+F +L LG+ N K + R ++ +G + Sbjct: 4 LVIYALLAAFIFSRLYNSLGRSANLNLKKLTNVLD-----VSRSREDVVENIEGY----I 54 Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 DS +E + + I+ DF F+ + ++E I+ F +G + ++ L+D Sbjct: 55 DSNDE-----NSIKVTYKQILKKNKDFSISHFIEGSSIAFELIIKCFNQGNLSQLKPLLD 109 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 +Y +F + + RK +++ +V I KI+ + +N V+I + + + I+ + Sbjct: 110 KDLYDNFAEKIKHRKEVHESI---IVSIVSQKILEIKLVKNAVFIAVYFLSEQINFVKNN 166 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 + +IS KV D+W F +N+ S+P+W+L+S Sbjct: 167 EGDIISGSTSTINKVEDVWQFKKNVNSSDPSWLLVS 202 >gi|254994672|ref|ZP_05276862.1| hypothetical protein AmarM_00445 [Anaplasma marginale str. Mississippi] Length = 217 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 24/226 (10%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 + ++AF+ F+F +L G LGK + S F ++ ++ G++ + Sbjct: 4 LAIYAFVAAFIFFRLYGSLGKAS------SVNFQPSAIYPEQ--------AGGEQAASDG 49 Query: 73 SINEL-FPIGTRLNKV--MRDIVSVYT-------DFDPKDFLNEARNSYEAIVDSFFEGK 122 SIN P+ + + + I SV+ F K F+ + ++EAIV + +G Sbjct: 50 SINSQDIPVSSVVADCASVEQIASVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGN 109 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + L+ ++ F + RKS + +V I K+ +A ++ N+ IT++ V Sbjct: 110 AEFLSSLLSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVT 169 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + I+ D ++ + D W F R+I S W L ST Sbjct: 170 EQINVVRDAGGQVVDGSTSKVNTIEDTWKFERDITTSGRRWYLTST 215 >gi|58584799|ref|YP_198372.1| hypothetical protein Wbm0542 [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419115|gb|AAW71130.1| Uncharacterized conserved protein related to eukaryotic translocase of inner mitochondrial membrane [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 218 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71 ++++A + FVF +L LG+ T N K + S+ E + + +D + Sbjct: 4 LVIYALLAAFVFSRLYNSLGRSTSLNLKKLTSVLD----ISQVREDVVENI-----EDYI 54 Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 DS N+ PI ++++ DF F+ + +E I+ F +G + ++ L+D Sbjct: 55 DS-NDKDPIKATYEQILQK----NKDFSISHFMEGSGVVFELIIKYFNQGNLSQLKPLLD 109 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 +Y +F + RK + +S +V I KI+ + +N V+I + + + I+ + Sbjct: 110 KDLYNNFAGKIKQRK---EIYESIIVSIVSQKILEIKLVKNVVFIAVYFLSEQINFVKND 166 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 +IS KV D+W F +N+ SNP+W+L S Sbjct: 167 KGDVISGSTSTINKVEDVWQFKKNVTSSNPSWLLTS 202 >gi|56416441|ref|YP_153515.1| hypothetical protein AM113 [Anaplasma marginale str. St. Maries] gi|56387673|gb|AAV86260.1| hypothetical protein AM113 [Anaplasma marginale str. St. Maries] Length = 217 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/226 (22%), Positives = 96/226 (42%), Gaps = 24/226 (10%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 + ++AF+ F+F +L G LGK + S F ++ ++ G++ + Sbjct: 4 LAIYAFVAAFIFFRLYGSLGKAS------SVNFQPSAIYPEQ--------AGGEQAASDG 49 Query: 73 SINEL-FPIGT---------RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 SIN P+ + +++ V I F K F+ + ++EAIV + +G Sbjct: 50 SINSQDIPVSSVVADCASVEQISSVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGN 109 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + L+ ++ F + RKS + +V I K+ +A ++ N+ IT++ V Sbjct: 110 AEFLSSLLSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVT 169 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + I+ D ++ + D W F R+I S W L ST Sbjct: 170 EQINVVRDAGGQVVDGSTSKVNTIEDTWKFERDITTSGRRWYLTST 215 >gi|114799709|ref|YP_758741.1| Tim44 domain-containing protein [Hyphomonas neptunium ATCC 15444] gi|114739883|gb|ABI78008.1| Tim44 domain protein [Hyphomonas neptunium ATCC 15444] Length = 204 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/213 (23%), Positives = 94/213 (44%), Gaps = 23/213 (10%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 +L+ A + FV +L LG+ G+E P KR G + + ++ +N Sbjct: 8 VLILAAVALFVLWRLYSALGRG-GDEGPVQ---RPAPTPEKRPTPGEMPAPQPRRIENER 63 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 I G + DI + F ++F+ A+ +Y+ IV ++ G +A+ L+D Sbjct: 64 PIFTGPAAG-----ALEDIYNADRSFSTEEFMRGAKAAYQLIVGAYARGDRNALRPLLDD 118 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 VY+ ++ +++ R + L+ I +I A ++ + + +R + Sbjct: 119 DVYEAWDAAIAERDATGARA-FELLRIKKAEIDRAELDGSMARVMVRYEAEL-------- 169 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 D E V +IWTF+R++ S+PNW+L Sbjct: 170 -----GDGETTRIVREIWTFMRDVSSSDPNWLL 197 >gi|99034421|ref|ZP_01314428.1| hypothetical protein Wendoof_01000767 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 198 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 73/139 (52%), Gaps = 3/139 (2%) Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148 + I+ DF F+ + ++E I+ F +G + ++ L+D +Y +F + + RK Sbjct: 49 KQILKKNKDFSISHFIEGSSIAFELIIKCFNQGNLSQLKPLLDKDLYDNFAEKIKHRKEV 108 Query: 149 EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208 +++ +V I KI+ + +N V+I + + + I+ + + +IS KV D Sbjct: 109 HESI---IVSIVSQKILEIKLVKNAVFIAVYFLSEQINFVKNNEGDIISGSTSTINKVED 165 Query: 209 IWTFVRNIPPSNPNWVLIS 227 +W F +N+ S+P+W+L+S Sbjct: 166 VWQFKKNVNSSDPSWLLVS 184 >gi|225677153|ref|ZP_03788152.1| hypothetical protein WUni_006480 [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590820|gb|EEH12048.1| hypothetical protein WUni_006480 [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 216 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/216 (22%), Positives = 100/216 (46%), Gaps = 18/216 (8%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71 ++++A + F+F +L LG+ N K + R ++ +G + Sbjct: 4 LVIYALLAAFIFSRLYNSLGRSANLNLKKLTNVLD-----VSRSREDVVENIEGY----I 54 Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 DS +E + + I+ DF F+ + ++E I+ F +G + ++ L+D Sbjct: 55 DSNDE-----NSIKVTYKQILKKNKDFSISHFIEGSSIAFELIIKCFNQGNLSQLKPLLD 109 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 +Y +F + + RK +++ +V I KI+ + +N V+I + + + I+ + Sbjct: 110 KDLYDNFAEKIKHRKEVHESI---IVSIVSQKILEIKLVKNAVFIAVYFLSEQINFVKNN 166 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 +IS KV D+W F +N+ S+P+W+L+S Sbjct: 167 KGDIISGSTSTINKVEDVWQFKKNVNSSDPSWLLVS 202 >gi|58696732|ref|ZP_00372276.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila simulans] gi|58698125|ref|ZP_00373048.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila ananassae] gi|225629991|ref|YP_002726782.1| hypothetical protein WRi_001450 [Wolbachia sp. wRi] gi|58535371|gb|EAL59447.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila ananassae] gi|58537084|gb|EAL60206.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila simulans] gi|225591972|gb|ACN94991.1| hypothetical protein WRi_001450 [Wolbachia sp. wRi] Length = 216 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 70/131 (53%), Gaps = 3/131 (2%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 DF F+ + ++E I+ F +G + ++ L+D +Y +F + + RK +++ + Sbjct: 75 DFSISHFIEGSSIAFELIIKYFNQGNLSQLKPLLDKDLYDNFAEKIKHRKEVHESI---I 131 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 V I KI+ + +N V+I + + + I+ + + +IS KV D+W F +N+ Sbjct: 132 VSIVSQKILEIKLVKNVVFIAVYFLSEQINFVKNNEGDIISGSTSTINKVEDVWQFKKNV 191 Query: 217 PPSNPNWVLIS 227 S+P+W+L+S Sbjct: 192 NSSDPSWLLVS 202 >gi|56552532|ref|YP_163371.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis subsp. mobilis ZM4] gi|260753807|ref|YP_003226700.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56544106|gb|AAV90260.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis subsp. mobilis ZM4] gi|258553170|gb|ACV76116.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 217 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/204 (22%), Positives = 94/204 (46%), Gaps = 10/204 (4%) Query: 27 LRGVLGKKTGNEKPFSGFFS-GKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLN 85 L VLG++TG+E+ F+ V ++ + ++ + KK++ + + Sbjct: 18 LYNVLGRRTGHEQSFTKPAEVSTTVVAQPNTALLMPASEQKKREEI--------VQPEAW 69 Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145 +R IVS FD F+ A+++Y I+++F++ + +V V++ F + R Sbjct: 70 DGIRRIVSRDAHFDLTGFIEGAKSAYGKILEAFWQNDRSKLADMVSKDVFEAFQQVIEKR 129 Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 ++ +++ LV ID + A IE + IT+ + + + ++I+ Sbjct: 130 EAEGSRLENRLVNIDKALVQKAGIEGDNAIITVSYDAWISTMLRNHEGIMIAGSSTDALP 189 Query: 206 VIDIWTFVRNIPPS-NPNWVLIST 228 D+WTF R+I NW+L+ T Sbjct: 190 THDVWTFSRSIKQEPKTNWLLVET 213 >gi|218459911|ref|ZP_03500002.1| putative translocase transmembrane protein [Rhizobium etli Kim 5] Length = 59 Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 27/54 (50%), Positives = 37/54 (68%) Query: 176 ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 IT+RIV Q ISA+YDK + LI D E +V D+WTF R+ +PNW L++T+ Sbjct: 2 ITVRIVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATE 55 >gi|11992022|gb|AAG42409.1|AF300471_12 unknown [Zymomonas mobilis subsp. mobilis ZM4] Length = 201 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/204 (22%), Positives = 94/204 (46%), Gaps = 10/204 (4%) Query: 27 LRGVLGKKTGNEKPFSGFFS-GKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLN 85 L VLG++TG+E+ F+ V ++ + ++ + KK++ + + Sbjct: 2 LYNVLGRRTGHEQSFTKPAEVSTTVVAQPNTALLMPASEQKKREEI--------VQPEAW 53 Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145 +R IVS FD F+ A+++Y I+++F++ + +V V++ F + R Sbjct: 54 DGIRRIVSRDAHFDLTGFIEGAKSAYGKILEAFWQNDRSKLADMVSKDVFEAFQQVIEKR 113 Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 ++ +++ LV ID + A IE + IT+ + + + ++I+ Sbjct: 114 EAEGSRLENRLVNIDKALVQKAGIEGDNAIITVSYDAWISTMLRNHEGIMIAGSSTDALP 173 Query: 206 VIDIWTFVRNIPPS-NPNWVLIST 228 D+WTF R+I NW+L+ T Sbjct: 174 THDVWTFSRSIKQEPKTNWLLVET 197 >gi|241762227|ref|ZP_04760309.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373274|gb|EER62893.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 217 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/204 (22%), Positives = 94/204 (46%), Gaps = 10/204 (4%) Query: 27 LRGVLGKKTGNEKPFSGFFS-GKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLN 85 L VLG++TG+E+ F+ V ++ + ++ + KK++ + + Sbjct: 18 LYNVLGRRTGHEQSFTKPTEVSTTVVAQPNTALLMPASEQKKREEI--------VQPEAW 69 Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145 +R IVS FD F+ A+++Y I+++F++ + +V V++ F + R Sbjct: 70 DGIRRIVSRDAHFDLTGFIEGAKSAYGKILEAFWQNDRSKLADMVSKDVFEAFQQVIEKR 129 Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 ++ +++ LV ID + A IE + IT+ + + + ++I+ Sbjct: 130 EAEGSRLENRLVNIDKALVQKAGIEGDNAIITVSYDAWISTMLRNHEGIMIAGSSTDALP 189 Query: 206 VIDIWTFVRNIPPS-NPNWVLIST 228 D+WTF R+I NW+L+ T Sbjct: 190 THDVWTFSRSIKQEPKTNWLLVET 213 >gi|254417984|ref|ZP_05031708.1| Tim44-like domain superfamily [Brevundimonas sp. BAL3] gi|196184161|gb|EDX79137.1| Tim44-like domain superfamily [Brevundimonas sp. BAL3] Length = 213 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 32/225 (14%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI----ITLGKG 65 F I++FA I V QL VLGK+ G + + D + + + + Sbjct: 4 QFQIVIFAVIAAIVLFQLYNVLGKRVGRQP-------------QEDAKALPSSPTSTAEA 50 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 K LD+ G + RD FDP F+ AR +YE IV + G A Sbjct: 51 SKTPALDAATLASIAGLK----ARDPA-----FDPNRFVEGARQAYETIVRGYAAGDRAA 101 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + L+ V F+ ++ R++ + + + A+++ + +R + + Sbjct: 102 LTPLLTPNVMASFDAGIAARETRGETETVEFLFPPRADLEGATVQGDKAVAKVRFLAELR 161 Query: 186 S----ASYDKDNLLISSDPEIFG-KVIDIWTFVRNIPPSNPNWVL 225 S AS D + ++ +P + + + WTF R + ++PNWVL Sbjct: 162 SRVTKASGDTAD-SVTGEPLVEERRTAEHWTFERTLGAADPNWVL 205 >gi|329891166|ref|ZP_08269509.1| tim44-like domain protein [Brevundimonas diminuta ATCC 11568] gi|328846467|gb|EGF96031.1| tim44-like domain protein [Brevundimonas diminuta ATCC 11568] Length = 205 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/218 (22%), Positives = 84/218 (38%), Gaps = 26/218 (11%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKP---FSGFFSGKYVFSKRDERGIITLGKGKK 67 F I++FA I + QL VLGKK G + + RG + Sbjct: 3 FQIVIFAVIAAVLLFQLYNVLGKKVGRQPEDNPKPVPVPAAPAGAPEAARGPV------- 55 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 + L + + + +FDP FL AR +YE IV ++ +G A+ Sbjct: 56 ------------VDPALTAAIAGLKTRDPNFDPHRFLEGARQAYETIVRAYAKGDRDALR 103 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 L+ +V F ++ R++ LV + A+ E + +R + + + Sbjct: 104 PLLTDKVMGSFEAGIAAREARGDAESVELVHAPRADLELATTEGDRALAKVRFLAEVRGS 163 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 ++ + + +IWTF R + S+PNW L Sbjct: 164 LTPSGGETVTEE----RRTAEIWTFERRLGASDPNWAL 197 >gi|330993443|ref|ZP_08317378.1| putative transporter protein [Gluconacetobacter sp. SXCC-1] gi|329759473|gb|EGG75982.1| putative transporter protein [Gluconacetobacter sp. SXCC-1] Length = 258 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/235 (20%), Positives = 104/235 (44%), Gaps = 26/235 (11%) Query: 8 SGDFLI--LLFAFITFFVFLQLRGVLGKKTGNE---KPFSGFFSGKYVFSKRDERGIITL 62 SG F + ++ + F+ L+LR +LG++ G E +P + + + + Sbjct: 35 SGHFPLDLVVLGLVAVFLVLRLRSILGRRVGAEPAVRPMAAQPAAQ------------PM 82 Query: 63 GKGKKKDNLDSINELFPIG-TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 + + +I P TR+ V+ I ++ F P++F ++ IV ++ G Sbjct: 83 VEKPVEPPPPAITYEIPTPDTRVGGVLARIAALQPGFTPQEFARGTETAFRQIVGAYAAG 142 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT-----VYI 176 + + + + + + F ++ +R+ + ++S + I D+ II A ++E I Sbjct: 143 DLDVLRERLTAATFGAFEAAIQSRQQAGEVLRSEIRDITDIAIIGAEVDEAAGPSPLARI 202 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTK 229 +RIV IS + D ++ + + D+WTF R + + P W L +++ Sbjct: 203 EVRIVSDQISLTVDSSGHPVAGV-DAVTEFSDLWTFERLLGVNAPGAGWRLGASR 256 >gi|190571472|ref|YP_001975830.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018875|ref|ZP_03334683.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357744|emb|CAQ55195.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995826|gb|EEB56466.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 219 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/216 (21%), Positives = 98/216 (45%), Gaps = 18/216 (8%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71 ++++A + F+F +L LG+ N K +G S+ E + + ++ Sbjct: 4 LVIYALLAAFIFSRLYNSLGRSASLNLKKLTGVLD----VSQSKEDVVENIEDYIYSNDK 59 Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 SI + + NK +F +F+ + ++E I+ F +G + ++ L+D Sbjct: 60 SSIETTYEQILQKNK----------EFSISNFIEGSSIAFELIIKYFNQGNLPQLKSLLD 109 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 +Y F D + RK +++ +V I KI+ + +N ++I + + + I+ + Sbjct: 110 KDLYNSFVDKIKHRKETHESI---IVSIVSQKILEIKLVKNVIFIAVYFLSEQINFVKNN 166 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 + + S KV D+W F +NI S+ W+L+S Sbjct: 167 EGNITSGSMSTINKVEDVWQFKKNINSSDLTWLLVS 202 >gi|197103473|ref|YP_002128850.1| hypothetical protein PHZ_c0007 [Phenylobacterium zucineum HLK1] gi|196476893|gb|ACG76421.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 205 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/221 (19%), Positives = 92/221 (41%), Gaps = 23/221 (10%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 +++FA + V QL VLG++ G + +++ +G + +D Sbjct: 6 LIIFAGLAAIVLYQLYSVLGRRVGRQP---------------EDQAAAEPAQGSVR-AVD 49 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + E G L + + ++ FD FL A+ +YE IV +F +G ++ L+ Sbjct: 50 RMAEPADDGVALTGLAA-VKALDPSFDVGHFLGGAKQAYEMIVRAFADGDRATLKNLLAP 108 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV-YITIRIVGQFISASYDK 191 +V F ++ R++ + + A + + +T+R + +F S + Sbjct: 109 QVLASFEAAIDQREAEGRTESVEFFHPPRADLEKADVTGADLGRVTVRFLAEFRSRTKGP 168 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + + + ++WTF RN+ +PNW+L+ E Sbjct: 169 EGEAVDDR-----RTAELWTFERNLKSRDPNWMLVHVDAAE 204 >gi|254796736|ref|YP_003081572.1| hypothetical protein NRI_0348 [Neorickettsia risticii str. Illinois] gi|254589983|gb|ACT69345.1| conserved hypothetical protein [Neorickettsia risticii str. Illinois] Length = 208 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/218 (20%), Positives = 99/218 (45%), Gaps = 19/218 (8%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 ++L+A + FF+F +L G+ E+ F + + I+ KK +D Sbjct: 3 LVLYAILVFFIFNRLYASFGR-VSVERELG--------FKAAEVKEILE----KKVRAID 49 Query: 73 SINELFPIGTRLNKVM---RDIVSVY-TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 + P + L +++ ++I S++ DF F+ A ++E +F + + + K Sbjct: 50 QFTYVAP--SDLQEIVSAKKEIESLWKQDFSTDRFMEGAERAFEMFTKAFTDCDLKVLSK 107 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L+ + + ++ ++ RK ++ +LV + +I + + +Y T+R V + I+ Sbjct: 108 LLSKKAFSVVSEKVAQRKIRGNTLERTLVALRSKNLIKLDVIKGVLYATVRFVSEQINVV 167 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 D ++S D + + D W F R++ N +WV+ Sbjct: 168 RDDAGRILSGDHDTIEVIEDKWVFERSLRSPNNSWVVC 205 >gi|88608273|ref|YP_506249.1| Tim44-like domain-containing protein [Neorickettsia sennetsu str. Miyayama] gi|88600442|gb|ABD45910.1| Tim44-like domain protein [Neorickettsia sennetsu str. Miyayama] Length = 208 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/218 (20%), Positives = 101/218 (46%), Gaps = 19/218 (8%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 ++L+A + FF+F +L G+ + + GF + + + I+ KK ++D Sbjct: 3 LILYAILVFFIFNRLYASFGRISVEREL--GFKAAEV-------KEILE----KKVRDID 49 Query: 73 SINELFPIGTRLNKVM---RDIVSVY-TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 + P + L +++ ++I S++ DF F+ A ++E +F + + + K Sbjct: 50 QFTYVAP--SDLQEIVSAKKEIESLWKQDFSTDRFMEGAERAFEMFTKAFTDCDLKVLSK 107 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L+ + + ++ + RK ++ +LV + +I + + +Y T+R V + I+ Sbjct: 108 LLSKKAFSVVSEKIEQRKIRGNTLERTLVALRSKNLIKLDVIKGVLYATVRFVSEQINVV 167 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 D ++S D + + D W F R++ + +WV+ Sbjct: 168 RDDAGRVLSGDHDTIEVIEDKWIFERSLKSPHNSWVVC 205 >gi|329847374|ref|ZP_08262402.1| tim44-like domain protein [Asticcacaulis biprosthecum C19] gi|328842437|gb|EGF92006.1| tim44-like domain protein [Asticcacaulis biprosthecum C19] Length = 212 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 34/224 (15%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 +++FA + + QL VLG+K G R E +T+ KG +L Sbjct: 4 LIIFAIVAVVILFQLYNVLGRKVGF----------------RAEDKPVTV-KGDDFGDLS 46 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + + P +R+ + + + +F+ +FL +AR SYE +V +F +G++ A++ + Sbjct: 47 TKTDKLPEASRMPN-LEMLKTRDANFNELNFLEKARESYEQVVIAFHKGELDAVKDKLSD 105 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 VY F +L R + E+ + S V I + ++ I +R + + + Y+K Sbjct: 106 TVYGIFAKALVGRAAPEETL--SFVDQPKADIDHIDFKDEVAQIRVRFLSELV---YEKT 160 Query: 193 NLLISS--------DPEI---FGKVIDIWTFVRNIPPSNPNWVL 225 S P++ + + WTF + + +N W+L Sbjct: 161 EAPAESAVPPTKADAPKVHRSHKRTAEYWTFQKGMKVANSPWLL 204 >gi|149192059|ref|ZP_01870285.1| hypothetical protein VSAK1_02529 [Vibrio shilonii AK1] gi|148834122|gb|EDL51133.1| hypothetical protein VSAK1_02529 [Vibrio shilonii AK1] Length = 294 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 34/224 (15%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 IL+F I F +F +RG+LG K G N++ F G T + +++ N Sbjct: 97 ILIFGLIAFVIFKFMRGMLGAKQGSMNQQRQQPAFGGN------------TRNQFEQQPN 144 Query: 71 LDSI----NELFPIGTRLNKVMRDIVSVYTD-FDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + N G D+ Y FD FLN AR Y + ++ ++H Sbjct: 145 FQNFEQPQNGGAATGGFGAAGHSDVPHNYPPGFDQAAFLNGAREHYRILQGAWNHNELHT 204 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 IE+ V + QD ++ R E + ++ + D +I+ A + N ++++ G++ Sbjct: 205 IEEYVSPSLLQDL---MAERAKLEGEQHTDVMYV-DAEIVRADFDANKAQLSLQFSGRYR 260 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A + + D E DIW R++ N W+++ + Sbjct: 261 DAVEN-----VEEDIE------DIWHLERDLTVPNAPWLIVGIQ 293 >gi|58617502|ref|YP_196701.1| hypothetical protein ERGA_CDS_07750 [Ehrlichia ruminantium str. Gardel] gi|58417114|emb|CAI28227.1| Hypothetical protein ERGA_CDS_07750 [Ehrlichia ruminantium str. Gardel] Length = 213 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 45/223 (20%), Positives = 99/223 (44%), Gaps = 21/223 (9%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 + ++AF+ F+F +L LG+ +G + +P S + + D T Sbjct: 4 LAIYAFVAAFIFFRLYNSLGRTSGLQPNNHSQPVS-------ILIQEDNNHDYT------ 50 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 ++D + + +M I +F K F++ + +++ I+ +F EG + + Sbjct: 51 --DIDIESVMESCDDNDQSIMNTIKRKDREFSLKYFMDGSMKAFDIIIKAFNEGNIQILC 108 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 L+D +Y F + RK+ + + +V I KI + N +IT++ + + I+ Sbjct: 109 SLLDKDLYNSFLTEIEYRKNLGQVYEDVIVSIIYHKITKLKLSGNIAHITVKFISEQINF 168 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIP-PSNPNWVLISTK 229 D++ ++ K+ D+WTF +++ ++ W L S + Sbjct: 169 VKDQEGNILQGSTSKINKIEDVWTFKKDMSLLTSKKWYLSSIQ 211 >gi|57239470|ref|YP_180606.1| hypothetical protein Erum7440 [Ehrlichia ruminantium str. Welgevonden] gi|58579448|ref|YP_197660.1| hypothetical protein ERWE_CDS_07840 [Ehrlichia ruminantium str. Welgevonden] gi|57161549|emb|CAH58476.1| conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] gi|58418074|emb|CAI27278.1| Hypothetical protein ERWE_CDS_07840 [Ehrlichia ruminantium str. Welgevonden] Length = 213 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 45/223 (20%), Positives = 98/223 (43%), Gaps = 21/223 (9%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 + ++AF+ F+F +L LG+ +G + +P S + + D T Sbjct: 4 LAIYAFVAAFIFFRLYNSLGRTSGLQPNNHSQPVS-------ILIQEDNNHDYT------ 50 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 ++D + + +M I +F K F++ + +++ I+ +F EG + Sbjct: 51 --DIDIESVMESCDDNDKSIMSTIKRKDREFSLKYFMDGSMKAFDIIIKAFNEGNTQILC 108 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 L+D +Y F + RK+ + + +V I KI + N +IT++ + + I+ Sbjct: 109 SLLDKDLYNSFLTEIEYRKNLGQVYEDVIVSIIHHKITKLKLSGNIAHITVKFISEQINF 168 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIP-PSNPNWVLISTK 229 D++ ++ K+ D+WTF +++ ++ W L S + Sbjct: 169 VKDQEGNILQGSTSKINKIEDVWTFKKDMSLLTSKKWYLSSIQ 211 >gi|317050977|ref|YP_004112093.1| import inner membrane translocase subunit Tim44 [Desulfurispirillum indicum S5] gi|316946061|gb|ADU65537.1| import inner membrane translocase subunit Tim44 [Desulfurispirillum indicum S5] Length = 249 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/223 (23%), Positives = 90/223 (40%), Gaps = 14/223 (6%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 +S F I FI +F +R + G+ + N P + G +D + + Sbjct: 28 NSATFSIFDILFIGAIIFFIVRALRGRTSRNNNPKDDWTLGG---KDQDSYSPTASNEPR 84 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 D I L+P T +K +R I +F DFL AR + + + ++ I Sbjct: 85 TTPGADKITSLYPEQT-THKGLRPIEMSDPNFTEGDFLAAAREVFSTVQQAKANEELEQI 143 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E L+D + + ++T + K V+ I + +A + T IT++ Sbjct: 144 EFLMDKAMLNQLQEDIATWRKEGKRVQLDSATIHSALVADAIQQMGTDCITVK-----FE 198 Query: 187 ASYDKDNLL--ISSDPE-IFGKVIDIWTFVRNIPPSNPNWVLI 226 A+ D+ L + +PE + V + W F+RNI W LI Sbjct: 199 ATLDRTFLPVDVEGEPEPVHETVTEYWRFMRNI--GEAAWQLI 239 >gi|88607695|ref|YP_504724.1| Tim44-like domain-containing protein [Anaplasma phagocytophilum HZ] gi|88598758|gb|ABD44228.1| Tim44-like domain protein [Anaplasma phagocytophilum HZ] Length = 241 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 48/220 (21%), Positives = 94/220 (42%), Gaps = 13/220 (5%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKR--DERGIITLGKGKKKDN 70 + ++AF+ F+F +L LG+ + S F G ++ D+R + ++ Sbjct: 30 LAIYAFVAAFIFFRLYSSLGRAS------SINFQGACATPEKPGDDRIALDAKNDQQDIP 83 Query: 71 LDSINE--LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 L S+ E F + +VMR + DF ++F+ + ++E I+ + G + Sbjct: 84 LTSVTEEEHFEEVSPGIEVMR---ARSMDFSLRNFMAGSAAAFEVIMKALNRGDTELLSS 140 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L+ +Y+ F + R S + +V I KI A + + IT++ + + I+ Sbjct: 141 LLSDDIYKSFEKEIMRRNSEGHIHEDVVVSIVSQKITAAKVIGDVAAITVKFLTEQINVV 200 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + +I+ V D WTF +N + W L +T Sbjct: 201 RNAAGDVIAGSTSKINVVEDFWTFEKNANSPSRKWYLSAT 240 >gi|260767913|ref|ZP_05876847.1| hypothetical protein VFA_000962 [Vibrio furnissii CIP 102972] gi|260615943|gb|EEX41128.1| hypothetical protein VFA_000962 [Vibrio furnissii CIP 102972] gi|315179616|gb|ADT86530.1| Tim44-like domain family [Vibrio furnissii NCTC 11218] Length = 291 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/225 (19%), Positives = 96/225 (42%), Gaps = 40/225 (17%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGN------EKP-FSGFFSGKYVFSKRDERGIITLGKG 65 IL+ I F +F +RG+LG K G+ ++P F G + Sbjct: 98 ILIIGLIAFVIFKLMRGLLGAKQGSMNQHQQQQPAFGGMNRNTF---------------- 141 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTD-FDPKDFLNEARNSYEAIVDSFFEGKVH 124 ++ N+ + + G +++ D+ Y D FD F+N AR Y + ++ ++ Sbjct: 142 -EQPNVHNFEQPQNSGGFGSQMQSDVPHNYPDGFDRVAFVNGAREHYRILQGAWNHNQLE 200 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 IE+ V +++D + R + + ++ ++ + D +I+ A + N ++++ G++ Sbjct: 201 TIEEYVSPSLFEDLK---AERAKIDTDPQTDVMYV-DAEIVRADYDANKAQLSLQFSGRY 256 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 S D + + DIW R++ N W+++ + Sbjct: 257 RDPSEDLEE-----------NIDDIWHLERDLTTPNAPWLIVGIQ 290 >gi|163803720|ref|ZP_02197579.1| hypothetical protein 1103602000427_AND4_04363 [Vibrio sp. AND4] gi|159172471|gb|EDP57338.1| hypothetical protein AND4_04363 [Vibrio sp. AND4] Length = 288 Score = 48.1 bits (113), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 47/228 (20%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGN-----EKPFSGFFSGKYVFS-----KRDERGIITL 62 IL+ I F +F +RG+LG K G ++P G + K+ ++ T Sbjct: 96 ILIMGLIAFVIFKLMRGMLGAKQGTMNQHRQQPAFGGNASKFEQPNMQNFEQQPNSAGTG 155 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 G G K D I +P G FD F+N +R Y + ++ + Sbjct: 156 GFGSKTD----IPHNYPPG----------------FDQAAFVNGSREHYRTLQGAWNHNQ 195 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 +H IE+ V ++ D L ++ + + V D +I+ A + N ++++ G Sbjct: 196 LHTIEEYVSPSLF----DDLKAERAKLDGEQHTDVMYVDAEIVRADYDANKAQLSLQFSG 251 Query: 183 QFISASYDKDNLL-ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 ++ +D++ + D + DIW R++ N W+++ + Sbjct: 252 RY------RDSVEGVEED------IQDIWHLERDLTVPNAPWLIVGIQ 287 >gi|315497202|ref|YP_004086006.1| import inner membrane translocase subunit tim44 [Asticcacaulis excentricus CB 48] gi|315415214|gb|ADU11855.1| import inner membrane translocase subunit Tim44 [Asticcacaulis excentricus CB 48] Length = 207 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/217 (22%), Positives = 89/217 (41%), Gaps = 26/217 (11%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG---NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 +L+ A I V QL VLG++ G +KP V D G + K Sbjct: 5 LLILALIAVVVLFQLYNVLGRRVGFKAEDKPV--------VPKTEDSEGPFNRPGQEPKA 56 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 P R+ + + S F+ +F+ +AR +YE IV +F G++ ++ Sbjct: 57 Q--------PERLRMPN-LDALKSRDAHFNEINFVEKAREAYEQIVLAFNRGEIEGLKDR 107 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + VY F ++ R +K + S V + ++++ + +R + + + Sbjct: 108 LSESVYGVFAKAIEAR-GEQKAMTVSFVESPKTDLDQIDLKDDRASVRVRFLSELLYEMA 166 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNI-PPSNPNWVL 225 D D + + + WTF +N+ P+NP W+L Sbjct: 167 DPDG---GEPKKAHRRTAEFWTFQKNLKSPTNP-WIL 199 >gi|302773644|ref|XP_002970239.1| hypothetical protein SELMODRAFT_441105 [Selaginella moellendorffii] gi|300161755|gb|EFJ28369.1| hypothetical protein SELMODRAFT_441105 [Selaginella moellendorffii] Length = 257 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 9/141 (6%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKS 154 + ++ K F EA + Y+ I G + + +LV + + + R++ V Sbjct: 112 HKGYNQKVFYREATDLYKEINKLSAAGDLGKLRRLVTEHFFSVIKNQIKQRQAAYSRVHW 171 Query: 155 SLVG-IDDMKIINASI--------EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 +VG I M+ + + + V IT+RI I A+YDK+N +I D E Sbjct: 172 EMVGQIKLMRTLQGRLIGIDRKDLDNAFVQITLRIQSNQIFAAYDKNNNIIKGDLEKPLL 231 Query: 206 VIDIWTFVRNIPPSNPNWVLI 226 V DIW F +++ + W L Sbjct: 232 VEDIWIFEKHLTRPDSTWRLC 252 >gi|302793266|ref|XP_002978398.1| hypothetical protein SELMODRAFT_418250 [Selaginella moellendorffii] gi|300153747|gb|EFJ20384.1| hypothetical protein SELMODRAFT_418250 [Selaginella moellendorffii] Length = 260 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 9/141 (6%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKS 154 + ++ K F EA + Y+ I G + + +LV + + + R++ V Sbjct: 115 HKGYNQKVFYREATDLYKEINKLSAAGDLGKLRRLVTEHFFSVIKNQIKQRQAAYSRVHW 174 Query: 155 SLVG-IDDMKIINASI--------EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 +VG I M+ + + + V IT+RI I A+YDK+N +I D E Sbjct: 175 EMVGQIKLMRTLQGRLIGIDRKDLDNAFVQITLRIQSNQIFAAYDKNNNIIKGDLEKPLL 234 Query: 206 VIDIWTFVRNIPPSNPNWVLI 226 V DIW F +++ + W L Sbjct: 235 VEDIWIFEKHLTRPDSTWRLC 255 >gi|37679309|ref|NP_933918.1| hypothetical protein VV1125 [Vibrio vulnificus YJ016] gi|320156948|ref|YP_004189327.1| hypothetical protein VVM_03684 [Vibrio vulnificus MO6-24/O] gi|326424146|ref|NP_761953.2| hypothetical protein VV1_3163 [Vibrio vulnificus CMCP6] gi|37198052|dbj|BAC93889.1| conserved hypothetical protein [Vibrio vulnificus YJ016] gi|319932260|gb|ADV87124.1| hypothetical protein VVMO6_02102 [Vibrio vulnificus MO6-24/O] gi|319999531|gb|AAO11480.2| hypothetical protein VV1_3163 [Vibrio vulnificus CMCP6] Length = 289 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 46/228 (20%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGK---------YVFSKRDERGIIT 61 IL+ I F +F +RG+L K G N+ F G+ + F + Sbjct: 96 ILIIGLIAFVIFKLMRGLLASKQGSMNQHRQQPAFGGQAPKFEQSNVHNFEQSPNTPTGG 155 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 G G + D + +P G FD F+N AR Y + ++ Sbjct: 156 FGFGAQSD----VPHNYPPG----------------FDQVAFVNGAREHYRILQGAWNHN 195 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 ++ IE+ V +++D L ++ + + V D +I+ A + +T +++++ Sbjct: 196 QLETIEEYVSPSLFED----LKAERAKLDGEQHTDVMYVDAQIVRADYDASTAHLSLQFS 251 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G++ A I D + DIW R++ N W+++ + Sbjct: 252 GRYRDAVEG-----IEED------ITDIWHLERDLTAPNAPWMIVGIQ 288 >gi|86148689|ref|ZP_01066968.1| hypothetical protein MED222_20209 [Vibrio sp. MED222] gi|218710150|ref|YP_002417771.1| hypothetical protein VS_2180 [Vibrio splendidus LGP32] gi|85833536|gb|EAQ51715.1| hypothetical protein MED222_20209 [Vibrio sp. MED222] gi|218323169|emb|CAV19346.1| hypothetical protein VS_2180 [Vibrio splendidus LGP32] Length = 307 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 29/224 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGN--------EKP-FSGFFSGKYVFSKRDERGIITLG 63 IL+ I F F LRG+LG K G+ ++P F G K+ K+ + + Sbjct: 99 ILIMGLIAFLAFKFLRGMLGAKQGSMNQQNARGQQPAFGGMGQNKFEQPKQ-QPNVHNFE 157 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVY-TDFDPKDFLNEARNSYEAIVDSFFEGK 122 + + + S N G D+ Y FD F+N +R Y + ++ + Sbjct: 158 QAQPQSQPHSQNSAGGFGF---GAQSDVPHNYPPGFDQAAFINGSREHYRTLQGAWNHNE 214 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 ++ IE+ V +++D L ++ + + V D +I+ A + + ++++ G Sbjct: 215 LNTIEEYVSPSLFED----LKAERNKLDGDQHTDVMYVDAEIVRADHDGSKAQLSLQFSG 270 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 ++ + I D + DIW R++ N W+++ Sbjct: 271 RYRDTADG-----IEED------ITDIWHLERDLTTQNAPWLIV 303 >gi|261253352|ref|ZP_05945925.1| hypothetical protein VIA_003377 [Vibrio orientalis CIP 102891] gi|260936743|gb|EEX92732.1| hypothetical protein VIA_003377 [Vibrio orientalis CIP 102891] Length = 292 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 45/217 (20%), Positives = 85/217 (39%), Gaps = 29/217 (13%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 IL+ I F +F +R +LG K G N++ F G K ++ + N Sbjct: 98 ILIMGLIAFVIFKLMRSMLGAKQGSMNQQRQQPAFGGSA--PKFEQPNV---------HN 146 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTD-FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + G D+ Y FD F+N +R Y + ++ ++H IE+ Sbjct: 147 FEQPQNAPQGGGFGFGAQTDVPHNYPPGFDQSAFINGSREHYRILQGAWNHNQLHTIEEY 206 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V +Y+D L ++ + + V D +I+ A + ++++ G++ A Sbjct: 207 VSPSLYED----LKAERAKLNGEQHTDVMYVDAEIVRADHDATKAQLSLQFSGRYRDAVE 262 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 I D + DIW R++ N W+++ Sbjct: 263 G-----IEED------ITDIWHLERDLTTPNAPWLIV 288 >gi|258626499|ref|ZP_05721339.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258581210|gb|EEW06119.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 290 Score = 44.3 bits (103), Expect = 0.012, Method: Compositional matrix adjust. Identities = 43/224 (19%), Positives = 89/224 (39%), Gaps = 38/224 (16%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65 IL+ I F +F +RG+L K G N+ +SG + F + + ++G G Sbjct: 97 ILIMGLIAFVIFKLMRGLLASKQGSMNQSQQQPAYSGMNRTSFEQPNVHNFEQPQSMGGG 156 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + +P+G FD F+N AR Y + ++ ++ Sbjct: 157 FGSAAQSDVPHNYPVG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 200 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 I + V +++D L ++N + + + V D +I+ A + N ++++ G++ Sbjct: 201 IREYVSPSLFED----LQAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYR 256 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A I + D+W R++ N W+++ + Sbjct: 257 DAVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 289 >gi|28897713|ref|NP_797318.1| hypothetical protein VP0939 [Vibrio parahaemolyticus RIMD 2210633] gi|28805926|dbj|BAC59202.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|328473305|gb|EGF44153.1| hypothetical protein VP10329_21550 [Vibrio parahaemolyticus 10329] Length = 290 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 46/220 (20%), Positives = 90/220 (40%), Gaps = 29/220 (13%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 IL+ I F +F +RG+LG K G N++ F G SK ++ + N Sbjct: 96 ILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNA--SKFEQPNM---------QN 144 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + G D+ Y FD F+N +R Y + ++ ++ IE+ Sbjct: 145 FEQQPNTNAGGFTGFGAQTDVPHNYPPGFDQAAFINGSREHYRILQGAWNHNQLDTIEEY 204 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V +++D L ++ + + + V D +I+ A + N ++++ G++ A+ Sbjct: 205 VSPSLFED----LKAERAKLEGEQHTDVMYVDAEIVRAEYDANKAQLSLQFSGRYRDAAE 260 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + D E DIW R++ N W+++ + Sbjct: 261 G-----VEEDIE------DIWHLERDLTVPNAPWLIVGIQ 289 >gi|260878333|ref|ZP_05890688.1| import inner membrane translocase, subunit Tim44 [Vibrio parahaemolyticus AN-5034] gi|308092753|gb|EFO42448.1| import inner membrane translocase, subunit Tim44 [Vibrio parahaemolyticus AN-5034] Length = 287 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 46/218 (21%), Positives = 89/218 (40%), Gaps = 29/218 (13%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 IL+ I F +F +RG+LG K G N++ F G SK ++ + N Sbjct: 96 ILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNA--SKFEQPNM---------QN 144 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + G D+ Y FD F+N +R Y + ++ ++ IE+ Sbjct: 145 FEQQPNTNAGGFTGFGAQTDVPHNYPPGFDQAAFINGSREHYRILQGAWNHNQLDTIEEY 204 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V +++D L ++ + + + V D +I+ A + N ++++ G++ A+ Sbjct: 205 VSPSLFED----LKAERAKLEGEQHTDVMYVDAEIVRAEYDANKAQLSLQFSGRYRDAAE 260 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 + D E DIW R++ N W+++ Sbjct: 261 G-----VEEDIE------DIWHLERDLTVPNAPWLIVG 287 >gi|61806584|ref|NP_001013525.1| mitochondrial import inner membrane translocase subunit TIM44 [Danio rerio] gi|60649493|gb|AAH90431.1| Translocase of inner mitochondrial membrane 44 homolog (yeast) [Danio rerio] gi|182891522|gb|AAI64677.1| Timm44 protein [Danio rerio] Length = 452 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 38/189 (20%), Positives = 78/189 (41%), Gaps = 5/189 (2%) Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100 F+ FF K + + D I + D I LF T +++V+ +I+ V FD Sbjct: 255 FNRFFEMKMKYDESD-NAFIRASRAVTDKMTDIIGGLFS-KTEMSEVLTEILKVDPTFDK 312 Query: 101 KDFLNEA-RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159 FL + ++ I+++ +G++ ++ Y + K+ S ++ I Sbjct: 313 DSFLKQCEKDIIPNILEAMIQGELDVLKDWCYEATYSQLAHPIQQAKAMGLQFHSKILDI 372 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 D++ + + E + I Q + + ++ DPE +++ +W R+ Sbjct: 373 DNIDLAMGKMMEQGPVLIITFQAQLVMVIRNVKGEVVEGDPEKVLRMMYVWALCRDQEEL 432 Query: 220 NPN--WVLI 226 NPN W L+ Sbjct: 433 NPNAAWRLL 441 >gi|262166075|ref|ZP_06033812.1| hypothetical protein VMA_002525 [Vibrio mimicus VM223] gi|262025791|gb|EEY44459.1| hypothetical protein VMA_002525 [Vibrio mimicus VM223] Length = 290 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 38/224 (16%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65 IL+ I F +F +RG+L K G N+ +SG + F + + ++G G Sbjct: 97 ILIMGLIAFVIFKLMRGLLASKQGSMNQSQQQPAYSGMNRTSFEQPNVHNFEQPQSMGGG 156 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + +P G FD F+N AR Y + ++ ++ Sbjct: 157 FGSAAQSDVPHNYPAG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 200 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 I + V +++D L ++N + + + V D +I+ A + N ++++ G++ Sbjct: 201 IREYVSPSLFED----LQAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYR 256 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A I + D+W R++ N W+++ + Sbjct: 257 DAVEG-----------IEENIEDVWHLERDLTVQNAPWLIVGIQ 289 >gi|148907785|gb|ABR17018.1| unknown [Picea sitchensis] Length = 190 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 17/172 (9%) Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 +G K+ D I+E F + K+ + T + F EA Y+ I +G Sbjct: 22 RGWKRSKEDLISE-FKTAYAIAKLRK-----LTKYSKPKFYEEAIQLYKEINSHLAQGDR 75 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL----VGIDDMKIINASIEENT-----V 174 ++ +LV +Y F + R++ V + V I ++ ++++N V Sbjct: 76 TSLRQLVTENMYTIFKREIKQRETTWSRVHWEMIEPTVRIRTLRARMIAVDKNNLDNAFV 135 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 IT+ I+ A+YD +LI+ D ++ V DIW F R++ W L Sbjct: 136 QITLEILTNQKFAAYDLKGILITEDSKVL--VEDIWVFERSLFQPGARWRLC 185 >gi|258621272|ref|ZP_05716306.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|262171047|ref|ZP_06038725.1| hypothetical protein VII_001862 [Vibrio mimicus MB-451] gi|258586660|gb|EEW11375.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|261892123|gb|EEY38109.1| hypothetical protein VII_001862 [Vibrio mimicus MB-451] Length = 290 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 38/224 (16%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65 IL+ I F +F +RG+L K G N+ +SG + F + + ++G G Sbjct: 97 ILIMGLIAFVIFKLMRGLLASKQGSMNQSQQQPAYSGMNRTSFEQPNVHNFEQPQSMGGG 156 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + +P G FD F+N AR Y + ++ ++ Sbjct: 157 FGSAAQSDVPHNYPAG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 200 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 I + V +++D L ++N + + + V D +I+ A + N ++++ G++ Sbjct: 201 IREYVSPSLFED----LQAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYR 256 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A I + D+W R++ N W+++ + Sbjct: 257 DAVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 289 >gi|269965560|ref|ZP_06179674.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269829785|gb|EEZ84020.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 290 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 29/217 (13%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 IL+ I F +F +RG+LG K G N+ F G SK ++ + N Sbjct: 96 ILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNA--SKFEQPNM---------QN 144 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTD-FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + G D+ Y FD F+N +R Y + ++ ++ IE+ Sbjct: 145 FEQQPNTNNGGFGGFGAQTDVPHNYPPGFDQAAFINGSREHYRILQGAWNHNQLETIEEY 204 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V +++D L ++ + + V D +I+ A + N ++++ G++ Sbjct: 205 VSPSLFED----LKAERAKLDGEQHTDVMYVDAEIVRADYDANKAQLSLQFSGRY----- 255 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 +D + + ++ DIW R++ N W+++ Sbjct: 256 -RDTVEGVEE-----EIEDIWHLERDLTAPNAPWLIV 286 >gi|148977909|ref|ZP_01814462.1| hypothetical protein VSWAT3_01775 [Vibrionales bacterium SWAT-3] gi|145962855|gb|EDK28127.1| hypothetical protein VSWAT3_01775 [Vibrionales bacterium SWAT-3] Length = 304 Score = 42.4 bits (98), Expect = 0.048, Method: Compositional matrix adjust. Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 43/229 (18%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT----LGKGK-- 66 IL+ I F F LRG+LG K G+ ++++ RG +G+ K Sbjct: 100 ILIMGLIAFLAFKFLRGMLGAKQGS-------------MNQQNARGQQPAFGGMGQNKFE 146 Query: 67 ---KKDNLDSINELFPIGTRLNKV-----MRDIVSVYT-DFDPKDFLNEARNSYEAIVDS 117 ++ N+ + + P D+ Y FD F+N +R Y + + Sbjct: 147 QPTQQPNVHNFEQAQPQSQGTAGGFGFGAQSDVPHNYPPGFDQAAFINGSREHYRTLQGA 206 Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 + ++ IE+ V +++D L +S + + V D +I+ A + + ++ Sbjct: 207 WNHNELSTIEEYVSPSLFED----LKAERSKLDGDQHTDVMYVDAEIVRADHDGSKAQLS 262 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 ++ G++ ++ I D + DIW R++ N W+++ Sbjct: 263 LQFSGRYRDSAEG-----IEED------ITDIWHLERDLTTDNAPWLIV 300 >gi|261210612|ref|ZP_05924905.1| hypothetical protein VCJ_000865 [Vibrio sp. RC341] gi|260840397|gb|EEX66968.1| hypothetical protein VCJ_000865 [Vibrio sp. RC341] Length = 289 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 44/224 (19%), Positives = 86/224 (38%), Gaps = 38/224 (16%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65 IL+ I F +F +RG+L K G N+ F G + F + + ++G G Sbjct: 96 ILIMGLIAFVIFKLMRGLLASKQGSMNQSQQQPAFGGMNRTPFEQPNVHNFEQPQSMGGG 155 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 I +P G FD F+N AR Y + ++ ++ Sbjct: 156 FGSAAQSDIPHNYPAG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 199 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 I + V ++ D L ++N + + + V D +I+ A + N ++++ G++ Sbjct: 200 IREYVSPSLF----DDLKAERANYEGEQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYR 255 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A I + D+W R++ N W+++ + Sbjct: 256 DAVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 288 >gi|117923796|ref|YP_864413.1| import inner membrane translocase, subunit Tim44 [Magnetococcus sp. MC-1] gi|117607552|gb|ABK43007.1| import inner membrane translocase, subunit Tim44 [Magnetococcus sp. MC-1] Length = 331 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 26/137 (18%), Positives = 60/137 (43%) Query: 96 TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155 ++FD F++ A+ +E + S+ + ++ L+ ++ ++ + ++N + Sbjct: 195 SNFDEFTFIDGAKRCFEMLQTSWSTFDMTTLQGLLTPQMMEEVENHARQLQANGQRDVVK 254 Query: 156 LVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRN 215 V + ++ A E+ Y+T+R + D ++S D +V + W F R Sbjct: 255 NVHFSEAALVEAWSEQGQDYLTVRFDVSLVEYVEDASGQVVSGDANHPQQVQEFWVFTRA 314 Query: 216 IPPSNPNWVLISTKLGE 232 NPNW L + + + Sbjct: 315 QGARNPNWQLSAIQQAQ 331 >gi|239947276|ref|ZP_04699029.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239921552|gb|EER21576.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 211 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 30/135 (22%), Positives = 64/135 (47%), Gaps = 13/135 (9%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---------SKRDERGIITLG 63 +L+FA I FF+ +L LG + E+ + G+ V S ++E+ I T Sbjct: 8 LLIFAVIAFFIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSTVKSNKEEKNIPTAQ 67 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 K ++ + + + + +V + S FDP F+N A+ +++ I+++ ++ Sbjct: 68 DIKAFKDIIVEHNITAVVDGMEQVHNRLYS----FDPVKFINNAKTAFQMIIEAAYKKDT 123 Query: 124 HAIEKLVDSRVYQDF 138 + +L+D R ++F Sbjct: 124 QELSELIDKRYLEEF 138 >gi|254507626|ref|ZP_05119759.1| import inner membrane translocase, subunit Tim44 [Vibrio parahaemolyticus 16] gi|219549513|gb|EED26505.1| import inner membrane translocase, subunit Tim44 [Vibrio parahaemolyticus 16] Length = 292 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 29/217 (13%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 IL+ I F +F +RG+LG K G N++ F G K ++ + N Sbjct: 98 ILIIGLIAFVIFKLMRGMLGAKQGSMNQQRQQPAFGGSA--PKFEQPNV---------HN 146 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTD-FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + + G D+ Y FD F+N +R Y + ++ ++ IE+ Sbjct: 147 FEQPQQTGSQGGFGFGSQTDVPHNYPPGFDHAAFINGSREHYRILQGAWNHNQLETIEEY 206 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V ++ D L + ++ + + + V D +I+ A + + ++++ G++ A Sbjct: 207 VSPSLFAD----LKSERAKLEGEQHTDVMYVDAEIVRADYDASKAQLSLQFSGRYRDAVE 262 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 I D + DIW R++ N W+++ Sbjct: 263 G-----IEED------IADIWHLERDLTVPNAPWLIV 288 >gi|67459060|ref|YP_246684.1| hypothetical protein RF_0668 [Rickettsia felis URRWXCal2] gi|67004593|gb|AAY61519.1| unknown [Rickettsia felis URRWXCal2] Length = 211 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 45/230 (19%), Positives = 94/230 (40%), Gaps = 49/230 (21%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---------SKRDERGIITLG 63 +L+FA I F++ +L LG + E+ + G+ V S ++E+ I T Sbjct: 8 LLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSTVKSNKEEKNIPTAQ 67 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 K ++ + + + + +V + + S FDP F+N A+ +++ I+++ ++ Sbjct: 68 DIKAFKDIIVEHNITAVVDGMEQVHKHLYS----FDPIKFINNAKTAFQMIIEAAYKKDA 123 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE-----NTVYITI 178 + +L+D R ++F + + S D+ ++A E N ++I + Sbjct: 124 KELSELIDKRYLEEF-----------EKITPSYGDFFDLSALSAKYSEIYMFGNNIFIKL 172 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDI---WTFVRNIPPSNPNWVL 225 G+ + K+ D+ WTF RN +W L Sbjct: 173 LFQGK-----------------NVVDKIEDLKEEWTFTRNANTKEVDWFL 205 >gi|326678158|ref|XP_003201001.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-like [Danio rerio] gi|94734038|emb|CAK04039.1| novel protein containing a Tim44-like domain (zgc:110764) [Danio rerio] Length = 452 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 37/189 (19%), Positives = 78/189 (41%), Gaps = 5/189 (2%) Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100 F+ FF K + + D I + D I LF T +++V+ +I+ V FD Sbjct: 255 FNRFFEMKMKYDESD-NAFIRASRAVTDKMTDIIGGLFS-KTEMSEVLTEILKVDPSFDK 312 Query: 101 KDFLNEA-RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159 FL + ++ I+++ +G++ ++ Y + K+ S ++ I Sbjct: 313 DSFLKQCEKDIIPNILEAMIQGELDVLKDWCYEATYSQLAHPIQQAKAMGLQFHSKILDI 372 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 D++ + + E + I Q + + ++ DP+ +++ +W R+ Sbjct: 373 DNIDLAMGKMMEQGPVLIITFQAQLVMVIRNVKGEVVEGDPDKVLRMMYVWALCRDQEEL 432 Query: 220 NPN--WVLI 226 NPN W L+ Sbjct: 433 NPNAAWRLL 441 >gi|157803805|ref|YP_001492354.1| hypothetical protein A1E_03170 [Rickettsia canadensis str. McKiel] gi|157785068|gb|ABV73569.1| hypothetical protein A1E_03170 [Rickettsia canadensis str. McKiel] Length = 211 Score = 42.0 bits (97), Expect = 0.059, Method: Compositional matrix adjust. Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 13/135 (9%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---------SKRDERGIITLG 63 +L+FA I FF+ +L LG E+ + G+ V S + E+ + T+ Sbjct: 8 LLIFALIAFFIINKLITTLGSTAEEEQTKQKSYFGEPVIKDVTYSAVKSNKAEKNLPTVE 67 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 K ++ + + + +V + + S FDP F+N A+ +++ I+++ ++ Sbjct: 68 DIKAFQDIIVEQNITAVVDGMEQVHKRLYS----FDPVKFINNAKTAFQMIIEAAYKKDT 123 Query: 124 HAIEKLVDSRVYQDF 138 + +LVD R ++F Sbjct: 124 QELSELVDKRYLEEF 138 >gi|157964519|ref|YP_001499343.1| hypothetical protein RMA_0619 [Rickettsia massiliae MTU5] gi|157844295|gb|ABV84796.1| hypothetical protein RMA_0619 [Rickettsia massiliae MTU5] Length = 211 Score = 42.0 bits (97), Expect = 0.063, Method: Compositional matrix adjust. Identities = 29/135 (21%), Positives = 65/135 (48%), Gaps = 13/135 (9%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---------SKRDERGIITLG 63 +L+FA ITF++ +L LG + E+ + G+ + S ++E+ I T Sbjct: 8 LLIFAVITFYIINKLITTLGSTSEEEQTNQKSYFGEPIIKDVTYSTVKSNKEEKNIPTTQ 67 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 K ++ + + + + +V + + S FDP F+N A+ +++ I+++ ++ Sbjct: 68 DIKAFKDIIVEHNITAVVDGMEQVHKRLYS----FDPVKFINNAKTAFQMIIEAAYKKDA 123 Query: 124 HAIEKLVDSRVYQDF 138 + +L+D R +F Sbjct: 124 KELSELIDKRYLAEF 138 >gi|84387756|ref|ZP_00990772.1| hypothetical protein V12B01_05945 [Vibrio splendidus 12B01] gi|84377439|gb|EAP94306.1| hypothetical protein V12B01_05945 [Vibrio splendidus 12B01] Length = 302 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 44/229 (19%), Positives = 92/229 (40%), Gaps = 43/229 (18%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGN--------EKP-FSGFFSGKYVFSKRDERGIITLG 63 IL+ I F F LRG+LG K G+ ++P F G K+ Sbjct: 98 ILIMGLIAFLAFKFLRGMLGAKQGSMNQQNARGQQPAFGGMGQNKFE------------- 144 Query: 64 KGKKKDNLDSINELFPIGTRLNKV-----MRDIVSVYT-DFDPKDFLNEARNSYEAIVDS 117 + K++ N+ + + P D+ Y FD F+N +R Y + + Sbjct: 145 QPKQQPNVHNFEQAQPQSQGAAGGFGFGAQSDVPHNYPPGFDQAAFINGSREHYRTLQGA 204 Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 + +++ IE+ V +++D L ++ + + V D +I+ A + + ++ Sbjct: 205 WNHNELNTIEEYVSPSLFED----LKAERNKLDGDQHTDVMYVDAEIVRADHDGSKAQLS 260 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 ++ G++ + + D + DIW R++ +N W+++ Sbjct: 261 LQFSGRYRDTADG-----VEED------ITDIWHLERDLTTNNAPWLIV 298 >gi|262404319|ref|ZP_06080874.1| hypothetical protein VOA_002310 [Vibrio sp. RC586] gi|262349351|gb|EEY98489.1| hypothetical protein VOA_002310 [Vibrio sp. RC586] Length = 290 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 43/224 (19%), Positives = 86/224 (38%), Gaps = 38/224 (16%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65 IL+ I F +F +RG+L K G N +SG + F + + ++G G Sbjct: 97 ILIMGLIAFVIFKLMRGLLASKQGSMNHSQQQPAYSGMNRTSFEQPNVHNFEQPQSMGGG 156 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + +P G FD F+N AR Y + ++ ++ Sbjct: 157 FGSTAQSDVPHNYPAG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 200 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 I + V +++D L ++N + + V D +I+ A + N ++++ G++ Sbjct: 201 IREYVSPSLFED----LKAERANYAGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYR 256 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A I + D+W R++ N W+++ + Sbjct: 257 DAVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 289 >gi|59712270|ref|YP_205046.1| Tim44-like domain-contain protein [Vibrio fischeri ES114] gi|59480371|gb|AAW86158.1| Tim44-like domain family [Vibrio fischeri ES114] Length = 297 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 43/218 (19%), Positives = 87/218 (39%), Gaps = 20/218 (9%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ A I F +F R ++ K G+ G Y + + + ++ D Sbjct: 98 ILIMAGIAFILFKVFRSMMAAKAGSMNQRQG---AAYAGPQGQQDAQPSFRDNQQYFQAD 154 Query: 73 SINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 P G D+ Y FD + F+N +R Y + ++ ++ I++ V Sbjct: 155 QATAQ-PTGGFGAASADDVPHNYPPGFDMQAFINGSREHYRILQGAWNHNQLETIQEYVS 213 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 +Y ND + R + E + ++ + D +++ A + N ++++ G++ A Sbjct: 214 ISLY---NDLVQERATLEGEQHTDVMYV-DAEVVRADYDANRAQLSLQFSGRYRDAVEG- 268 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I D + DIW R++ N W++I + Sbjct: 269 ----IEED------ITDIWHLERDLTQPNAPWLIIGIQ 296 >gi|229586715|ref|YP_002845216.1| hypothetical protein RAF_ORF0564 [Rickettsia africae ESF-5] gi|228021765|gb|ACP53473.1| Unknown [Rickettsia africae ESF-5] Length = 211 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 29/135 (21%), Positives = 65/135 (48%), Gaps = 13/135 (9%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---------SKRDERGIITLG 63 +L+FA I F++ +L LG + E+ + G+ V S ++E+ I T Sbjct: 8 LLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSIVKSNKEEKNIPTAQ 67 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 K ++ + + + + +V + + S FDP F+N A+ +++ I+++ ++ Sbjct: 68 DIKAFKDIIVEHNITAVVDGMEQVHKRLYS----FDPVKFINNAKTAFQMIIEAAYKKDA 123 Query: 124 HAIEKLVDSRVYQDF 138 + +L+D R ++F Sbjct: 124 KELSELIDKRYLEEF 138 >gi|15892527|ref|NP_360241.1| hypothetical protein RC0604 [Rickettsia conorii str. Malish 7] gi|15619688|gb|AAL03142.1| unknown [Rickettsia conorii str. Malish 7] Length = 211 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 29/135 (21%), Positives = 65/135 (48%), Gaps = 13/135 (9%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---------SKRDERGIITLG 63 +L+FA I F++ +L LG + E+ + G+ + S ++E+ I T Sbjct: 8 LLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPIIKDVTYSIVKSNKEEKNIPTAQ 67 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 K ++ + + I + +V + + S FDP F+N A+ +++ I+++ ++ Sbjct: 68 DIKAFKDIIVEHNITAIVDGMEQVHKRLYS----FDPVKFINNAKTAFQMIIEAAYKKDA 123 Query: 124 HAIEKLVDSRVYQDF 138 + +L+D R ++F Sbjct: 124 KELSELIDKRYLEEF 138 >gi|34580481|ref|ZP_00141961.1| hypothetical protein [Rickettsia sibirica 246] gi|157828477|ref|YP_001494719.1| hypothetical protein A1G_03400 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933195|ref|YP_001649984.1| hypothetical protein RrIowa_0720 [Rickettsia rickettsii str. Iowa] gi|28261866|gb|EAA25370.1| unknown [Rickettsia sibirica 246] gi|157800958|gb|ABV76211.1| hypothetical protein A1G_03400 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908282|gb|ABY72578.1| hypothetical protein RrIowa_0720 [Rickettsia rickettsii str. Iowa] Length = 211 Score = 41.6 bits (96), Expect = 0.078, Method: Compositional matrix adjust. Identities = 29/135 (21%), Positives = 65/135 (48%), Gaps = 13/135 (9%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---------SKRDERGIITLG 63 +L+FA I F++ +L LG + E+ + G+ V S ++E+ I T Sbjct: 8 LLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSIVKSNKEEKNIPTAQ 67 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 K ++ + + + + +V + + S FDP F+N A+ +++ I+++ ++ Sbjct: 68 DIKAFKDIIVEHNITAVVDGMEQVHKRLYS----FDPVKFINNAKTAFQMIIEAAYKKDA 123 Query: 124 HAIEKLVDSRVYQDF 138 + +L+D R ++F Sbjct: 124 KELSELIDKRYLEEF 138 >gi|53804400|ref|YP_113719.1| hypothetical protein MCA1256 [Methylococcus capsulatus str. Bath] gi|53758161|gb|AAU92452.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath] Length = 204 Score = 41.6 bits (96), Expect = 0.079, Method: Compositional matrix adjust. Identities = 48/213 (22%), Positives = 85/213 (39%), Gaps = 31/213 (14%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 +LLFA I FF++ +L + +P +G +G Y S+ G G+ + D Sbjct: 15 LLLFAGIGFFLYR----LLAARGSQPQPAAG--AGYYPHSENP--GGANPVSGRPAFDTD 66 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 ++ + S DFD FLN A+ +Y + ++ E + + L Sbjct: 67 LLSR--------RGGAQPAQSQPADFDTTGFLNGAKAAYRQLQAAWDERDLGTLRALTTD 118 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 +V+ + D L R S E++ ++ ++A I + +R G + D Sbjct: 119 KVFAELQDQL--RASAERHST-------ELLRVDAEI------LEVRDRGDEREVAVLFD 163 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 L + E V ++W FVR+ P W L Sbjct: 164 VTLREAPAEEAAVVHEVWHFVRSRSSRQPTWFL 196 >gi|197334926|ref|YP_002156484.1| import inner membrane translocase, subunit Tim44 [Vibrio fischeri MJ11] gi|197316416|gb|ACH65863.1| import inner membrane translocase, subunit Tim44 [Vibrio fischeri MJ11] Length = 297 Score = 41.6 bits (96), Expect = 0.079, Method: Compositional matrix adjust. Identities = 43/218 (19%), Positives = 87/218 (39%), Gaps = 20/218 (9%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ A I F +F R ++ K G+ G Y + + + ++ D Sbjct: 98 ILIMAGIAFILFKVFRSMMAAKAGSMNQRQG---AAYAGPQGQQDAQPSFRDNQQYFQAD 154 Query: 73 SINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 P G D+ Y FD + F+N +R Y + ++ ++ I++ V Sbjct: 155 QATTQ-PTGGFGAASADDVPHNYPPGFDMQSFINGSREHYRILQGAWNHNQLETIQEYVS 213 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 +Y ND + R + E + ++ + D +++ A + N ++++ G++ A Sbjct: 214 ISLY---NDLVQERATLEGEQHTDVMYV-DAEVVRADHDANRAQLSLQFSGRYRDAVEG- 268 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I D + DIW R++ N W++I + Sbjct: 269 ----IEED------ITDIWHLERDLTQPNAPWLIIGIQ 296 >gi|323491921|ref|ZP_08097090.1| hypothetical protein VIBR0546_04127 [Vibrio brasiliensis LMG 20546] gi|323313779|gb|EGA66874.1| hypothetical protein VIBR0546_04127 [Vibrio brasiliensis LMG 20546] Length = 292 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 43/220 (19%), Positives = 90/220 (40%), Gaps = 35/220 (15%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGN-----EKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 IL+ I F +F +RG+LG K G+ ++P G + K+ + Sbjct: 98 ILIMGLIAFVIFKLMRGMLGSKQGSMNKNRQQPAFGGSAPKF--------------EQPN 143 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTD-FDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 N + G DI Y FD F+N +R Y + ++ ++ I Sbjct: 144 VHNFEQPQSGAQGGGFGFGAQSDIPHNYPPGFDQTAFINGSREHYRILQGAWNHNQLETI 203 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E+ V +++D L + ++ + + + V D +I+ A + + ++++ G++ Sbjct: 204 EEYVSPSLFED----LKSERAKLEGEQHTDVMYVDAEIVRADYDASKAQLSLQFSGRY-- 257 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 +D++ I + DIW R++ N W+++ Sbjct: 258 ----RDSV-----EGIEENIEDIWHLERDLTTPNAPWLIV 288 >gi|262394794|ref|YP_003286648.1| hypothetical protein VEA_004023 [Vibrio sp. Ex25] gi|262338388|gb|ACY52183.1| hypothetical protein VEA_004023 [Vibrio sp. Ex25] Length = 290 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 44/220 (20%), Positives = 88/220 (40%), Gaps = 29/220 (13%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 IL+ I F +F +RG+LG K G N+ F G SK ++ + N Sbjct: 96 ILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNA--SKFEQPNM---------QN 144 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTD-FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + G D+ Y FD F+N +R Y + ++ ++ IE+ Sbjct: 145 FEQQPNTNNGGFGGFGAQTDVPHNYPPGFDQAAFINGSREHYRILQGAWNHNQLETIEEY 204 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V +++D L ++ + + V D +I+ A N ++++ G++ Sbjct: 205 VSPSLFED----LKAERAKLDGEQHTDVMYVDAEIVRADYNANKAQLSLQFSGRY----- 255 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 +D + + ++ DIW R++ N W+++ + Sbjct: 256 -RDTVEGVEE-----EIEDIWHLERDLTVPNAPWLIVGIQ 289 >gi|238650294|ref|YP_002916146.1| hypothetical protein RPR_00625 [Rickettsia peacockii str. Rustic] gi|238624392|gb|ACR47098.1| hypothetical protein RPR_00625 [Rickettsia peacockii str. Rustic] Length = 211 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/135 (21%), Positives = 65/135 (48%), Gaps = 13/135 (9%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---------SKRDERGIITLG 63 +L+FA I F++ +L LG + E+ + G+ V S ++E+ I T Sbjct: 8 LLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSIVKSNKEEKNIPTAQ 67 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 K ++ + + + + +V + + S FDP F+N A+ +++ I+++ ++ Sbjct: 68 DIKVFKDIIVEHNITAVVDGMEQVHKRLYS----FDPVKFINNAKTAFQMIIEAAYKKDA 123 Query: 124 HAIEKLVDSRVYQDF 138 + +L+D R ++F Sbjct: 124 KELSELIDKRYLEEF 138 >gi|312882412|ref|ZP_07742153.1| hypothetical protein VIBC2010_18049 [Vibrio caribbenthicus ATCC BAA-2122] gi|309369812|gb|EFP97323.1| hypothetical protein VIBC2010_18049 [Vibrio caribbenthicus ATCC BAA-2122] Length = 281 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 46/218 (21%), Positives = 90/218 (41%), Gaps = 29/218 (13%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 IL+ I F +F +R +LG K G N+ F G SK ++ + K+ Sbjct: 85 ILIMGIIAFVIFKLVRAMLGAKQGSLNQHRQQPAFGGSA--SKFEQPNVNQF----KEQQ 138 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + N+ G D+ Y FD F+N +R Y + ++ ++ IE+ Sbjct: 139 QPTTNQTGGFGF---SAQSDVPHNYPPGFDNAAFVNGSREHYRLLQGAWNHNQLDTIEEY 195 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V ++ D L T ++ + + V D +I+ A + + ++++ G++ Sbjct: 196 VSQSLF----DDLKTERAKLSGEQHTDVMFVDAEIVRADYDASKAQLSLQFSGRY----- 246 Query: 190 DKDNLL-ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 +D + I D + DIW R++ N W+++ Sbjct: 247 -RDTVEGIEED------ITDIWHLERDLTTPNAPWLIV 277 >gi|25009742|gb|AAN71045.1| AT09326p [Drosophila melanogaster] gi|40882559|gb|AAR96191.1| AT24717p [Drosophila melanogaster] Length = 459 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ M ++V + FD KDFL + I++S G + ++ + + Sbjct: 301 TELSETMTELVKIDPSFDQKDFLRDCETDIIPNILESIVRGDLEILKDWCFESTFNIIAN 360 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K + S ++ I+++++ + E + I Q I D+ + ++ DP Sbjct: 361 PIKEAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKSQVVEGDP 420 Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226 E +V +W R+ NP W L+ Sbjct: 421 EKVMRVHYVWVLCRDRNELNPKAAWRLM 448 >gi|260776293|ref|ZP_05885188.1| hypothetical protein VIC_001677 [Vibrio coralliilyticus ATCC BAA-450] gi|260607516|gb|EEX33781.1| hypothetical protein VIC_001677 [Vibrio coralliilyticus ATCC BAA-450] Length = 292 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 42/220 (19%), Positives = 89/220 (40%), Gaps = 29/220 (13%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 IL+ + F +F +RG+LG K G N++ F G K ++ + N Sbjct: 98 ILIMGLVAFIIFKLMRGLLGSKQGSMNQQRQQPAFGGSA--PKFEQPNV---------HN 146 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTD-FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + + G DI Y FD F+N +R Y + ++ ++ IE+ Sbjct: 147 FEQQPQSGSQGGFGFGAQSDIPHNYPPGFDKVAFINGSREHYRTLQGAWNHNQLDTIEEY 206 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V +++D L ++ + + + V D +I+ A + + ++++ G++ A Sbjct: 207 VSPSLFED----LKAERAKLEGEQHTDVMYVDAEIVRADYDASKAQLSLQFSGRYRDAVE 262 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + + + DIW R++ N W+++ + Sbjct: 263 NVEE-----------NIEDIWHLERDLTVPNAPWLIVGIQ 291 >gi|24648138|ref|NP_650786.2| CG11779, isoform A [Drosophila melanogaster] gi|78706780|ref|NP_001027193.1| CG11779, isoform D [Drosophila melanogaster] gi|7300484|gb|AAF55639.1| CG11779, isoform A [Drosophila melanogaster] gi|71854566|gb|AAZ52532.1| CG11779, isoform D [Drosophila melanogaster] Length = 459 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ M ++V + FD KDFL + I++S G + ++ + + Sbjct: 301 TELSETMTELVKIDPSFDQKDFLRDCETDIIPNILESIVRGDLEILKDWCFESTFNIIAN 360 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K + S ++ I+++++ + E + I Q I D+ + ++ DP Sbjct: 361 PIKEAKKAGVYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKSQVVEGDP 420 Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226 E +V +W R+ NP W L+ Sbjct: 421 EKVMRVHYVWVLCRDRNELNPKAAWRLM 448 >gi|323499402|ref|ZP_08104378.1| hypothetical protein VISI1226_21579 [Vibrio sinaloensis DSM 21326] gi|323315587|gb|EGA68622.1| hypothetical protein VISI1226_21579 [Vibrio sinaloensis DSM 21326] Length = 292 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 43/225 (19%), Positives = 86/225 (38%), Gaps = 39/225 (17%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYV--FSKRD----ERGIITLGK 64 IL+ I F +F +RG+LG K G N+ F G+ F + + E+ Sbjct: 98 ILIIGLIAFLIFKLMRGMLGAKQGSMNQHRQQPAFGGQSAPKFEQPNVHNFEQPQTGSQG 157 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 G + +P G FD F+N +R Y + ++ ++ Sbjct: 158 GFGFGGQTDVPHNYPPG----------------FDHAAFINGSREHYRILQGAWNHNQLE 201 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 IE+ V +Y+D L ++ + + V D +I+ A + + ++++ G++ Sbjct: 202 TIEEYVSPSLYED----LKAERAKLDGEQHTDVMYVDAEIVRADYDASKAQLSLQFSGRY 257 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A + + DIW R++ N W+++ + Sbjct: 258 RDAVEGVEE-----------NIEDIWHLERDLTTPNAPWLIVGIQ 291 >gi|269961023|ref|ZP_06175392.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834242|gb|EEZ88332.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 303 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 17/178 (9%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 IL+ I F +F +RG+LG K G N+ F G SK ++ + + N Sbjct: 108 ILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNA--SKFEQPNMQNFEQQPNNTN 165 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTD-FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 DI Y FD F+N +R Y + ++ ++H IE+ Sbjct: 166 AGG--------FGGFGAQTDIPHNYPPGFDQAAFINGSREHYRILQGAWNHNQLHTIEEY 217 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 V +++D L ++ + + V D +I+ A + N ++++ G++ A Sbjct: 218 VSPSLFED----LKAERAKLDGEQHTDVMYVDAEIVRADYDANKAQLSLQFSGRYRDA 271 >gi|195497862|ref|XP_002096280.1| GE25149 [Drosophila yakuba] gi|194182381|gb|EDW95992.1| GE25149 [Drosophila yakuba] Length = 459 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ M ++V + FD KDFL + I++S G + ++ + + Sbjct: 301 TELSETMTELVKIDPSFDQKDFLRDCETDIIPNILESIVRGDLEILKDWCFESTFNIIAN 360 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K + S ++ I+++++ + E + I Q I D+ + ++ DP Sbjct: 361 PIKEAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKSQVVEGDP 420 Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226 E +V +W R+ NP W L+ Sbjct: 421 EKVMRVHYVWVLCRDRNELNPKAAWRLM 448 >gi|229521878|ref|ZP_04411295.1| hypothetical protein VIF_002420 [Vibrio cholerae TM 11079-80] gi|229340803|gb|EEO05808.1| hypothetical protein VIF_002420 [Vibrio cholerae TM 11079-80] Length = 291 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 42/224 (18%), Positives = 87/224 (38%), Gaps = 38/224 (16%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65 IL+ I F +F +R L K G N+ +SG + F + + ++G G Sbjct: 98 ILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQPQSMGGG 157 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + +P+G FD F+N AR Y + ++ ++ Sbjct: 158 FGSAAQSDVPHNYPVG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 201 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 I + V +++D L ++N + + + V D +I+ A + N ++++ G++ Sbjct: 202 IREYVSPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYR 257 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A I + D+W R++ N W+++ + Sbjct: 258 DAVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 290 >gi|195108009|ref|XP_001998585.1| GI24055 [Drosophila mojavensis] gi|193915179|gb|EDW14046.1| GI24055 [Drosophila mojavensis] Length = 452 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 11/152 (7%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEAR-----NSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136 T L++ M ++V + +FD K FL++ N EAIV G + ++ Y Sbjct: 294 TELSETMTELVKIDPNFDQKQFLHDCEKDIIPNVLEAIV----RGDLEILKDWCFESTYN 349 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196 ++ K + S ++ I+++++ + E + I Q I D+ ++ Sbjct: 350 IIATPITQAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKGQVV 409 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPN--WVLI 226 DPE +V +W R+ NP W L+ Sbjct: 410 EGDPEKVMRVHYVWVLCRDRNELNPKAAWRLM 441 >gi|195353703|ref|XP_002043343.1| GM10044 [Drosophila sechellia] gi|194127457|gb|EDW49500.1| GM10044 [Drosophila sechellia] Length = 458 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ M ++V + FD KDFL + I++S G + ++ + + Sbjct: 300 TELSETMTELVKIDPSFDQKDFLRDCETDIIPNILESIVRGDLEILKDWCFESTFNIIAN 359 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K + S ++ I+++++ + E + I Q I D+ + ++ DP Sbjct: 360 PIKEAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKSQVVEGDP 419 Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226 E +V +W R+ NP W L+ Sbjct: 420 EKVMRVHYVWVLCRDRNELNPKAAWRLM 447 >gi|24648140|ref|NP_732403.1| CG11779, isoform B [Drosophila melanogaster] gi|7300485|gb|AAF55640.1| CG11779, isoform B [Drosophila melanogaster] Length = 428 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ M ++V + FD KDFL + I++S G + ++ + + Sbjct: 270 TELSETMTELVKIDPSFDQKDFLRDCETDIIPNILESIVRGDLEILKDWCFESTFNIIAN 329 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K + S ++ I+++++ + E + I Q I D+ + ++ DP Sbjct: 330 PIKEAKKAGVYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKSQVVEGDP 389 Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226 E +V +W R+ NP W L+ Sbjct: 390 EKVMRVHYVWVLCRDRNELNPKAAWRLM 417 >gi|195569739|ref|XP_002102866.1| GD20131 [Drosophila simulans] gi|194198793|gb|EDX12369.1| GD20131 [Drosophila simulans] Length = 304 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ M ++V + FD KDFL + I++S G + ++ + + Sbjct: 146 TELSETMTELVKIDPSFDQKDFLRDCETDIIPNILESIVRGDLEILKDWCFESTFNIIAN 205 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K + S ++ I+++++ + E + I Q I D+ + ++ DP Sbjct: 206 PIKEAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKSQVVEGDP 265 Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226 E +V +W R+ NP W L+ Sbjct: 266 EKVMRVHYVWVLCRDRNELNPKAAWRLM 293 >gi|63093891|dbj|BAD98172.1| hypothetical protein [Drosophila parabipectinata] Length = 460 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 30/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ M ++V + FD K+FL++ I+++ G + ++ Y Sbjct: 302 TELSETMTELVKIDPSFDQKEFLHDCETDIIPNILEAIVRGDLEILKDWCFESTYNIIAT 361 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 ++ K + S ++ I+++++ + E + I Q I D+ ++ DP Sbjct: 362 PITQAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKAQVVEGDP 421 Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226 E +V +W R+ NP W L+ Sbjct: 422 EKVMRVHYVWVLCRDRNELNPKAAWRLM 449 >gi|194900032|ref|XP_001979561.1| GG16152 [Drosophila erecta] gi|190651264|gb|EDV48519.1| GG16152 [Drosophila erecta] Length = 459 Score = 40.0 bits (92), Expect = 0.22, Method: Compositional matrix adjust. Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ M ++V + FD KDFL + I++S G + ++ + + Sbjct: 301 TELSETMTELVKIDPCFDQKDFLRDCETDIIPNILESIVRGDLEILKDWCFESTFNIIAN 360 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K + S ++ I+++++ + E + I Q I D+ + ++ DP Sbjct: 361 PIKEAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKSQVVEGDP 420 Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226 E +V +W R+ NP W L+ Sbjct: 421 EKVMRVHYVWVLCRDRNELNPKAAWRLM 448 >gi|153826379|ref|ZP_01979046.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|149739857|gb|EDM54048.1| conserved hypothetical protein [Vibrio cholerae MZO-2] Length = 223 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 42/224 (18%), Positives = 86/224 (38%), Gaps = 38/224 (16%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65 IL+ I F +F +R L K G N+ +SG + F + + ++G G Sbjct: 30 ILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQPQSMGGG 89 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + +P G FD F+N AR Y + ++ ++ Sbjct: 90 FGSAAQSDVPHNYPAG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 133 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 I + V +++D L ++N + + + V D +I+ A + N ++++ G++ Sbjct: 134 IREYVSPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYR 189 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A I + D+W R++ N W+++ + Sbjct: 190 DAVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 222 >gi|157825721|ref|YP_001493441.1| hypothetical protein A1C_03235 [Rickettsia akari str. Hartford] gi|157799679|gb|ABV74933.1| hypothetical protein A1C_03235 [Rickettsia akari str. Hartford] Length = 211 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 29/135 (21%), Positives = 64/135 (47%), Gaps = 13/135 (9%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---------SKRDERGIITLG 63 +L+FA I F++ +L LG + E+ + G+ V S ++E+ I T Sbjct: 8 LLIFAVIAFYIINKLITTLGSTSEEEQTRQKSYFGEPVIKDVTYSTVKSNKEEKNIPTAQ 67 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 K ++ + + + + +V + + S FDP F+N A+ +++ I+++ ++ Sbjct: 68 DIKAFKDIIVEHNITAVVDGMEQVHKRLYS----FDPVKFINNAKTAFQMIIEAAYKKDS 123 Query: 124 HAIEKLVDSRVYQDF 138 + +L+D R + F Sbjct: 124 KELSELIDKRYLEAF 138 >gi|195452294|ref|XP_002073291.1| GK13236 [Drosophila willistoni] gi|194169376|gb|EDW84277.1| GK13236 [Drosophila willistoni] Length = 457 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 33/151 (21%), Positives = 66/151 (43%), Gaps = 9/151 (5%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 T L++ M ++V + +FD K+FL++ I+ + E V ++ ++ Sbjct: 299 TELSETMTELVKIDPNFDQKEFLHDCETD---IIPNILEAIVRGDLDILKDWCFESTYSI 355 Query: 142 LSTRKSNEKN----VKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197 +ST N K + S ++ I+++++ + E + I Q I D+ ++ Sbjct: 356 ISTPILNAKKTGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKAQVVE 415 Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPN--WVLI 226 DPE +V +W R+ NP W L+ Sbjct: 416 GDPEKVMRVHYVWVLCRDRNELNPKAAWRLM 446 >gi|153820281|ref|ZP_01972948.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126509172|gb|EAZ71766.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] Length = 239 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 42/224 (18%), Positives = 86/224 (38%), Gaps = 38/224 (16%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65 IL+ I F +F +R L K G N+ +SG + F + + ++G G Sbjct: 46 ILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQPQSMGGG 105 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + +P G FD F+N AR Y + ++ ++ Sbjct: 106 FGSAAQSDVPHNYPAG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 149 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 I + V +++D L ++N + + + V D +I+ A + N ++++ G++ Sbjct: 150 IREYVSPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYR 205 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A I + D+W R++ N W+++ + Sbjct: 206 DAVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 238 >gi|312385733|gb|EFR30159.1| hypothetical protein AND_00421 [Anopheles darlingi] Length = 340 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 44/202 (21%), Positives = 90/202 (44%), Gaps = 19/202 (9%) Query: 25 LQLRGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPI 80 ++ RG+L + E+PF +G YV + D R +G K+ +I +L Sbjct: 83 MKERGILPPRPWLERPFYISCTGGVFEPYVPPEGDGRMSAISREGAKQ----AIEQL-EK 137 Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T+ +R I S DFD +DF +A++ Y + E + + ++V R Y + Sbjct: 138 KTKSMMAIRKIRSYDEDFDARDFATQAQDIYIQAHQTMCEKNKYKLREIVTERAYPELMH 197 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASI-----EENT-VYITIRIVGQFISASYDKDNL 194 +++ + + +KS ++ ++++A +EN +T+R Q + A YD+ Sbjct: 198 NVADKTIRWQFIKS----LEPPRVVHARCTDVITKENIFAQVTVRFHSQQLLAIYDRFGR 253 Query: 195 LISSDPEIFGKVIDIWTFVRNI 216 L+ I ++ F +++ Sbjct: 254 LMHGSETIEKDCLEYVVFEKHL 275 >gi|195037110|ref|XP_001990008.1| GH18477 [Drosophila grimshawi] gi|193894204|gb|EDV93070.1| GH18477 [Drosophila grimshawi] Length = 452 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 11/152 (7%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEAR-----NSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136 T L++ M ++V + +FD K+FL++ N EAIV G + ++ Y Sbjct: 294 TELSETMTELVKIDPNFDQKEFLHDCEKDIIPNVLEAIV----RGDLEILKDWCFESTYN 349 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196 ++ K + + S ++ I+++++ + E + I Q I D+ ++ Sbjct: 350 IIATPITQAKKSGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKAQVV 409 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPN--WVLI 226 DP+ +V +W R+ NP W L+ Sbjct: 410 EGDPDKVMRVHYVWVLCRDRNELNPKAAWRLM 441 >gi|63093892|dbj|BAD98173.1| hypothetical protein [Drosophila parabipectinata] Length = 428 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 30/148 (20%), Positives = 63/148 (42%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ M ++V + FD K+FL++ I+++ G + ++ Y Sbjct: 270 TELSETMTELVKIDPSFDQKEFLHDCETDIIPNILEAIVRGDLEILKDWCFESTYNIIAT 329 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 ++ K + S ++ I+++++ + E + I Q I D+ ++ DP Sbjct: 330 PITQAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKAQVVEGDP 389 Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226 E +V +W R+ NP W L+ Sbjct: 390 EKVMRVHYVWVLCRDRNELNPKAAWRLM 417 >gi|327484501|gb|AEA78908.1| hypothetical protein VCLMA_A1705 [Vibrio cholerae LMA3894-4] Length = 291 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 42/224 (18%), Positives = 86/224 (38%), Gaps = 38/224 (16%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65 IL+ I F +F +R L K G N+ +SG + F + + ++G G Sbjct: 98 ILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQPQSMGGG 157 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + +P G FD F+N AR Y + ++ ++ Sbjct: 158 FGSAAQSDVPHNYPAG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 201 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 I + V +++D L ++N + + + V D +I+ A + N ++++ G++ Sbjct: 202 IREYVSPSLFED----LKAERANYEGDQHTNVMYVDAEIVRADYDANRAQLSLQFSGRYR 257 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A I + D+W R++ N W+++ + Sbjct: 258 DAVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 290 >gi|229529012|ref|ZP_04418402.1| hypothetical protein VCG_002105 [Vibrio cholerae 12129(1)] gi|229332786|gb|EEN98272.1| hypothetical protein VCG_002105 [Vibrio cholerae 12129(1)] Length = 291 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 42/224 (18%), Positives = 86/224 (38%), Gaps = 38/224 (16%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65 IL+ I F +F +R L K G N+ +SG + F + + ++G G Sbjct: 98 ILIMGLIAFVIFKLMRAFLASKQGSLNQSQQQPAYSGMNRTPFEQPNVHNFEQPQSMGGG 157 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + +P G FD F+N AR Y + ++ ++ Sbjct: 158 FGSAAQSDVPHNYPAG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 201 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 I + V +++D L ++N + + + V D +I+ A + N ++++ G++ Sbjct: 202 IREYVSPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYR 257 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A I + D+W R++ N W+++ + Sbjct: 258 DAVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 290 >gi|15641966|ref|NP_231598.1| hypothetical protein VC1964 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590647|ref|ZP_01677981.1| hypothetical protein VC274080_2004 [Vibrio cholerae 2740-80] gi|121728634|ref|ZP_01681653.1| hypothetical protein VCV52_1929 [Vibrio cholerae V52] gi|147674189|ref|YP_001217491.1| hypothetical protein VC0395_A1550 [Vibrio cholerae O395] gi|153217402|ref|ZP_01951153.1| hypothetical protein A55_2172 [Vibrio cholerae 1587] gi|153801838|ref|ZP_01956424.1| hypothetical protein A51_B2032 [Vibrio cholerae MZO-3] gi|153822436|ref|ZP_01975103.1| hypothetical protein A5E_2262 [Vibrio cholerae B33] gi|229507945|ref|ZP_04397450.1| hypothetical protein VCF_003177 [Vibrio cholerae BX 330286] gi|229511819|ref|ZP_04401298.1| hypothetical protein VCE_003228 [Vibrio cholerae B33] gi|229518956|ref|ZP_04408399.1| hypothetical protein VCC_002983 [Vibrio cholerae RC9] gi|229523980|ref|ZP_04413385.1| hypothetical protein VCA_001559 [Vibrio cholerae bv. albensis VL426] gi|229607490|ref|YP_002878138.1| hypothetical protein VCD_002402 [Vibrio cholerae MJ-1236] gi|254226808|ref|ZP_04920380.1| hypothetical protein VCV51_1323 [Vibrio cholerae V51] gi|254849050|ref|ZP_05238400.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255745285|ref|ZP_05419234.1| hypothetical protein VCH_001631 [Vibrio cholera CIRS 101] gi|262156009|ref|ZP_06029129.1| hypothetical protein VIG_001228 [Vibrio cholerae INDRE 91/1] gi|262167916|ref|ZP_06035616.1| hypothetical protein VIJ_001090 [Vibrio cholerae RC27] gi|297579473|ref|ZP_06941401.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|9656503|gb|AAF95112.1| hypothetical protein VC_1964 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547490|gb|EAX57596.1| hypothetical protein VC274080_2004 [Vibrio cholerae 2740-80] gi|121629097|gb|EAX61542.1| hypothetical protein VCV52_1929 [Vibrio cholerae V52] gi|124113586|gb|EAY32406.1| hypothetical protein A55_2172 [Vibrio cholerae 1587] gi|124122610|gb|EAY41353.1| hypothetical protein A51_B2032 [Vibrio cholerae MZO-3] gi|125620655|gb|EAZ49017.1| hypothetical protein VCV51_1323 [Vibrio cholerae V51] gi|126520012|gb|EAZ77235.1| hypothetical protein A5E_2262 [Vibrio cholerae B33] gi|146316072|gb|ABQ20611.1| hypothetical protein VC0395_A1550 [Vibrio cholerae O395] gi|227013861|gb|ACP10071.1| conserved hypothetical protein [Vibrio cholerae O395] gi|229337561|gb|EEO02578.1| hypothetical protein VCA_001559 [Vibrio cholerae bv. albensis VL426] gi|229343645|gb|EEO08620.1| hypothetical protein VCC_002983 [Vibrio cholerae RC9] gi|229351784|gb|EEO16725.1| hypothetical protein VCE_003228 [Vibrio cholerae B33] gi|229355450|gb|EEO20371.1| hypothetical protein VCF_003177 [Vibrio cholerae BX 330286] gi|229370145|gb|ACQ60568.1| hypothetical protein VCD_002402 [Vibrio cholerae MJ-1236] gi|254844755|gb|EET23169.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255737115|gb|EET92511.1| hypothetical protein VCH_001631 [Vibrio cholera CIRS 101] gi|262023643|gb|EEY42344.1| hypothetical protein VIJ_001090 [Vibrio cholerae RC27] gi|262030187|gb|EEY48831.1| hypothetical protein VIG_001228 [Vibrio cholerae INDRE 91/1] gi|297537067|gb|EFH75900.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 291 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 42/224 (18%), Positives = 86/224 (38%), Gaps = 38/224 (16%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65 IL+ I F +F +R L K G N+ +SG + F + + ++G G Sbjct: 98 ILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQPQSMGGG 157 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + +P G FD F+N AR Y + ++ ++ Sbjct: 158 FGSAAQSDVPHNYPAG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 201 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 I + V +++D L ++N + + + V D +I+ A + N ++++ G++ Sbjct: 202 IREYVSPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYR 257 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A I + D+W R++ N W+++ + Sbjct: 258 DAVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 290 >gi|198450930|ref|XP_001358182.2| GA11194 [Drosophila pseudoobscura pseudoobscura] gi|198131257|gb|EAL27319.2| GA11194 [Drosophila pseudoobscura pseudoobscura] Length = 458 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 11/152 (7%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEAR-----NSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136 T L++ M ++V + FD K FL + N EAIV G + ++ Y Sbjct: 300 TELSETMTELVKIDPAFDQKQFLRDCETDIIPNVLEAIV----RGDLEILKDWCFESTYN 355 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196 ++ K + + S ++ I+D+ + + + + I Q I D ++ Sbjct: 356 VIATPITQAKKSGLYLDSKILDIEDIDLAMGKVMDQGPVLIITFQAQQIMCVRDPKGKVV 415 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPN--WVLI 226 DPE +V +W R+ NP W L+ Sbjct: 416 EGDPEKVMRVAYVWVLCRDREELNPKAAWRLL 447 >gi|307109340|gb|EFN57578.1| hypothetical protein CHLNCDRAFT_51139 [Chlorella variabilis] Length = 395 Score = 39.3 bits (90), Expect = 0.39, Method: Compositional matrix adjust. Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 23/153 (15%) Query: 83 RLNKVMRDIVSVYT---------DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 R + + S+YT F+ F E+ Y I +G+ ++ +LV Sbjct: 136 RWQRTLSQFKSMYTLAKCKKYVPGFNRNAFKQESLELYRDICRLLAQGERGSLRQLVTPA 195 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVG------IDDMKIINASI------EENT--VYITIR 179 V+ D L R+ S +D++ ++ + +E + +T+R Sbjct: 196 VFSDMKRQLKQREDPAAGRACSGTSSGWEPTVDELTTVHGRLIMINPKDETSGFAQLTVR 255 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTF 212 I A+YDK L++ DPE V D W F Sbjct: 256 IPSAQRFAAYDKAGKLVAGDPEQSIDVEDYWVF 288 >gi|254286893|ref|ZP_04961845.1| hypothetical protein A33_1875 [Vibrio cholerae AM-19226] gi|150423043|gb|EDN14992.1| hypothetical protein A33_1875 [Vibrio cholerae AM-19226] Length = 291 Score = 39.3 bits (90), Expect = 0.41, Method: Compositional matrix adjust. Identities = 42/224 (18%), Positives = 86/224 (38%), Gaps = 38/224 (16%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65 IL+ I F +F +R L K G N+ +SG + F + + ++G G Sbjct: 98 ILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQPQSMGGG 157 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + +P G FD F+N AR Y + ++ ++ Sbjct: 158 FGSAAQSDVPHNYPAG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 201 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 I + V +++D L ++N + + + V D +I+ A + N ++++ G++ Sbjct: 202 IREYVSPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYR 257 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A I + D+W R++ N W+++ + Sbjct: 258 DAVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 290 >gi|195143739|ref|XP_002012855.1| GL23705 [Drosophila persimilis] gi|194101798|gb|EDW23841.1| GL23705 [Drosophila persimilis] Length = 458 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 11/152 (7%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEAR-----NSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136 T L++ M ++V + FD K FL + N EAIV G + ++ Y Sbjct: 300 TELSETMTELVKIDPAFDQKQFLRDCETDIIPNVLEAIV----RGDLEILKDWCFESTYN 355 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196 ++ K + + S ++ I+D+ + + + + I Q I D ++ Sbjct: 356 IIATPITQAKKSGLYLDSKILDIEDIDLAMGKVMDQGPVLIITFQAQQIMCVRDPKGKVV 415 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPN--WVLI 226 DPE +V +W R+ NP W L+ Sbjct: 416 EGDPEKVMRVAYVWVLCRDREELNPKAAWRLL 447 >gi|260310504|gb|ACX36515.1| RE11601p [Drosophila melanogaster] Length = 428 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 31/148 (20%), Positives = 62/148 (41%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ M ++V + FD KDFL + I++S G + ++ + + Sbjct: 270 TELSETMTELVKIDPSFDQKDFLRDCETDIIPNILESIVRGDLEILKDWCFESTFNIIAN 329 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K + S ++ I+++++ E + I Q I D+ + ++ DP Sbjct: 330 PIKEAKKAGVYLDSKILDIENIELAMGKFMEQGPVLIITFQAQQIMCVRDQKSQVVEGDP 389 Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226 E +V +W R+ NP W L+ Sbjct: 390 EKVMRVHYVWVLCRDRNELNPKAAWRLM 417 >gi|159041402|ref|YP_001540654.1| DNA primase, large subunit [Caldivirga maquilingensis IC-167] gi|157920237|gb|ABW01664.1| DNA primase, large subunit [Caldivirga maquilingensis IC-167] Length = 371 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 31/163 (19%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH------AIEKLV--- 130 +G R++++M +F+P +N+A EA++ + K++ A+ + + Sbjct: 28 VGIRVSELMS------REFEP--IVNDALRMLEALIKNGEHAKLNFSVRDVAVSRYIAYV 79 Query: 131 -----DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 D R+++ DS S SN VK S + +++ I E + +RI+G Sbjct: 80 LTASMDKRIWRRIADSESKIFSN--MVKLSYLNKPNLECIKEVARE----LELRIIGVGE 133 Query: 186 SASYDKDNLLISSD---PEIFGKVIDIWTFVRNIPPSNPNWVL 225 +S L + P+ F + IW ++RN P ++PNWVL Sbjct: 134 VSSLVAKRLNLQGQVLMPKPFMYAVSIWDYLRNSPRNDPNWVL 176 >gi|229515345|ref|ZP_04404805.1| hypothetical protein VCB_003002 [Vibrio cholerae TMA 21] gi|229348050|gb|EEO13009.1| hypothetical protein VCB_003002 [Vibrio cholerae TMA 21] Length = 291 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 42/223 (18%), Positives = 88/223 (39%), Gaps = 36/223 (16%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGIITLGKGKKK 68 IL+ I F +F +R L K G N+ +SG + F ++ Sbjct: 98 ILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPF---------------EQ 142 Query: 69 DNLDSINELFPIGTRLNKVMR-DIVSVY-TDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 N+ + + +G + D+ Y FD F+N AR Y + ++ ++ I Sbjct: 143 PNVHNFEQPQSVGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 202 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + V +++D L ++N + + + V D +I+ A + N ++++ G++ Sbjct: 203 REYVSPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 258 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A I + D+W R++ N W+++ + Sbjct: 259 AVEG-----------IEENIEDVWHLERDLTVPNAPWLIVGIQ 290 >gi|47225693|emb|CAG08036.1| unnamed protein product [Tetraodon nigroviridis] Length = 397 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 37/193 (19%), Positives = 78/193 (40%), Gaps = 5/193 (2%) Query: 37 NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT 96 N F+ FF K + + D +I + D I LF T +++V+ +I+ V Sbjct: 196 NNAVFNRFFEMKMKYDESD-NALIRASRAVTDKMSDLIGGLFS-KTEMSEVLTEILKVDP 253 Query: 97 DFDPKDFLNEA-RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155 FD FL R+ I+++ +G++ ++ Y + K+ S Sbjct: 254 SFDKDSFLKLCERDIIPNILEAMIQGELDVLKDWCYEATYSQLAHPIQQAKATGLKFHSK 313 Query: 156 LVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRN 215 ++ ID++ + + + + I Q + + ++ DP+ +++ +W R+ Sbjct: 314 ILDIDNIDLAMGKMMDQGPVLIITFQAQLVMVIRNPKGEVVEGDPDKVIRMMYVWALCRD 373 Query: 216 IPPSNP--NWVLI 226 NP W L+ Sbjct: 374 QEELNPYAAWRLL 386 >gi|330446574|ref|ZP_08310226.1| tim44-like domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490765|dbj|GAA04723.1| tim44-like domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 290 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 41/219 (18%), Positives = 92/219 (42%), Gaps = 30/219 (13%) Query: 10 DFLIL-LFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 D LI+ + AF+ F +F +R G G+ + ++G + ++ R + Sbjct: 96 DILIIGVIAFVLFKLFKAMRANKGTPMGHRESYAGNSPQQPQQPQQQYRQAAGAQSQPQN 155 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 +S + P N F+ FL+ +R+ Y I ++ ++ I + Sbjct: 156 GGFESTDSDVPFNLPPN------------FNMNAFLSGSRDHYRIIQGAWNHNELEKIRE 203 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 V ++ D ++ + S E++ + V D +++ A + NT ++I+ G++ Sbjct: 204 YVSPALFADL-EAERAKLSGEQHTEVMYV---DAELVRADYDANTAQLSIKFSGRY---- 255 Query: 189 YDKDNLL-ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 KD++ + D + D+W R++ N W+++ Sbjct: 256 --KDSVEGVEED------ITDVWHLERDLKTPNAPWLIV 286 >gi|73987180|ref|XP_542123.2| PREDICTED: similar to Import inner membrane translocase subunit TIM44, mitochondrial precursor [Canis familiaris] Length = 454 Score = 38.5 bits (88), Expect = 0.66, Method: Compositional matrix adjust. Identities = 35/189 (18%), Positives = 77/189 (40%), Gaps = 5/189 (2%) Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100 F+ FF K + + D +I + D + LF T +++V+ +I+ V FD Sbjct: 257 FNRFFEMKMKYDESD-NALIRASRALTDKVTDLLGGLFS-KTEMSEVLTEILRVDPAFDK 314 Query: 101 KDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159 + FL + N ++++ G++ ++ Y + K+ S ++ I Sbjct: 315 ERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDI 374 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 D++ + + E + I Q + + ++ DP+ +++ +W R+ Sbjct: 375 DNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEGDPDKVLRMLYVWALCRDQDEL 434 Query: 220 NP--NWVLI 226 NP W L+ Sbjct: 435 NPYAAWRLL 443 >gi|194746677|ref|XP_001955803.1| GF18940 [Drosophila ananassae] gi|190628840|gb|EDV44364.1| GF18940 [Drosophila ananassae] Length = 461 Score = 38.5 bits (88), Expect = 0.69, Method: Compositional matrix adjust. Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 9/151 (5%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA-IEKLVDSRVYQDFN- 139 T L++ M ++V + FD K+FL++ I+ + E V +E L D FN Sbjct: 303 TELSETMTELVKIDPSFDQKEFLHDCETD---IIPNILEAIVRGDLEILKDWCFESTFNI 359 Query: 140 --DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197 ++ K + S ++ I+++++ + E + I Q I D+ ++ Sbjct: 360 IATPITQAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKAQVVE 419 Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPN--WVLI 226 DPE +V +W R+ NP W L+ Sbjct: 420 GDPEKVMRVHYVWVLCRDRNELNPKAAWRLM 450 >gi|311248590|ref|XP_003123248.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-like [Sus scrofa] Length = 454 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 26/148 (17%), Positives = 62/148 (41%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T +++V+ +I+ V FD + FL + N ++++ G++ ++ Y Sbjct: 296 TEMSEVLTEILRVDPAFDKERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 355 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K+ S ++ ID++ + + E + I Q + + ++ DP Sbjct: 356 PIQQAKALGLQFHSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEGDP 415 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLI 226 + +++ +W R+ NP W L+ Sbjct: 416 DKVLRMLYVWALCRDQDELNPYAAWRLL 443 >gi|119776251|ref|YP_928991.1| hypothetical protein Sama_3119 [Shewanella amazonensis SB2B] gi|119768751|gb|ABM01322.1| conserved hypothetical protein [Shewanella amazonensis SB2B] Length = 295 Score = 38.5 bits (88), Expect = 0.71, Method: Compositional matrix adjust. Identities = 24/132 (18%), Positives = 61/132 (46%), Gaps = 15/132 (11%) Query: 98 FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157 FD FL AR Y+ + ++ EG ++ I++ V ++ + LS ++ + + + V Sbjct: 178 FDLAAFLEGARGHYKTLQQAWNEGDLNKIQEYVSIELF----NELSQQRRELEGQQHTEV 233 Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217 D +++ A+ ++++ G++ A+ + D + ++W RN+ Sbjct: 234 MFLDAELVRATYNNELAEVSVKFSGRYRDAAEG-----VEED------IKEVWHLERNLL 282 Query: 218 PSNPNWVLISTK 229 +N W+++ + Sbjct: 283 QANSPWLIVGIQ 294 >gi|189236504|ref|XP_975336.2| PREDICTED: similar to mitochondrial import inner membrane translocase subunit tim44 [Tribolium castaneum] Length = 424 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ + +I + FD K FL + I+++ G + ++ + F Sbjct: 266 TELSETLTEICKIDPTFDTKKFLKQCETDIIPNILEAMTRGDLEVLKDWCHEGPFNLFAI 325 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + + S ++ +D++ ++ + E + I Q + D + ++ DP Sbjct: 326 PIKEAYKKGYKIDSKVLDVDNVDLVMGKVMEQGPVLIISFTSQQMMCVRDPNGNVVEGDP 385 Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226 E +V +W R+I +P W L+ Sbjct: 386 EKVMRVAYVWVLCRDISEPDPRAAWRLL 413 >gi|156973734|ref|YP_001444641.1| hypothetical protein VIBHAR_01439 [Vibrio harveyi ATCC BAA-1116] gi|156525328|gb|ABU70414.1| hypothetical protein VIBHAR_01439 [Vibrio harveyi ATCC BAA-1116] Length = 290 Score = 38.1 bits (87), Expect = 0.88, Method: Compositional matrix adjust. Identities = 43/229 (18%), Positives = 89/229 (38%), Gaps = 47/229 (20%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGN-----EKPFSGFFSGKYV------FSKRDERGIIT 61 IL+ I F +F +RG+LG K G+ ++P G + K+ F ++ Sbjct: 96 ILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNFEQQPNTNAGG 155 Query: 62 LGK-GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 G G + D I +P G FD F+N +R Y + ++ Sbjct: 156 FGGFGSQTD----IPHNYPPG----------------FDQAAFINGSREHYRILQGAWNH 195 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 ++H IE+ V +++D L ++ + + V D +I+ A + + ++++ Sbjct: 196 NQLHTIEEYVSPSLFED----LKAERAKLDGEQHTDVMYVDAEIVRADYDASKAQLSLQF 251 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G++ A + + W R++ N W+++ + Sbjct: 252 SGRYRDAEEGIEEDIEDI-----------WHLERDLTVPNAPWLIVGIQ 289 >gi|270005995|gb|EFA02443.1| hypothetical protein TcasGA2_TC008130 [Tribolium castaneum] Length = 421 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ + +I + FD K FL + I+++ G + ++ + F Sbjct: 263 TELSETLTEICKIDPTFDTKKFLKQCETDIIPNILEAMTRGDLEVLKDWCHEGPFNLFAI 322 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + + S ++ +D++ ++ + E + I Q + D + ++ DP Sbjct: 323 PIKEAYKKGYKIDSKVLDVDNVDLVMGKVMEQGPVLIISFTSQQMMCVRDPNGNVVEGDP 382 Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226 E +V +W R+I +P W L+ Sbjct: 383 EKVMRVAYVWVLCRDISEPDPRAAWRLL 410 >gi|118103065|ref|XP_418174.2| PREDICTED: similar to Translocase of inner mitochondrial membrane 44 homolog (yeast) [Gallus gallus] Length = 451 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 36/189 (19%), Positives = 77/189 (40%), Gaps = 5/189 (2%) Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100 F+ FF K + + D I + D I LF T +++V+ +I+ V FD Sbjct: 254 FNRFFEMKMKYDESD-NAFIRASRAVTDKVTDLIGGLFS-KTEMSEVLTEILKVDPSFDK 311 Query: 101 KDFLNEA-RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159 FL + R+ ++++ G++ ++ Y + K+ S ++ I Sbjct: 312 DRFLKQCERDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKAMGLQFHSRILDI 371 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 D++ + + E + I Q + ++ ++ DP+ +++ +W R+ Sbjct: 372 DNIDLAMGKMMEQGPVLIITFQAQIVMVIKNQKGEVVEGDPDKVLRMLYVWALCRDQDEL 431 Query: 220 NP--NWVLI 226 NP W L+ Sbjct: 432 NPYAAWRLL 440 >gi|157131210|ref|XP_001655824.1| mitochondrial ribosomal protein, L45, putative [Aedes aegypti] gi|108871608|gb|EAT35833.1| mitochondrial ribosomal protein, L45, putative [Aedes aegypti] Length = 334 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 41/177 (23%), Positives = 80/177 (45%), Gaps = 19/177 (10%) Query: 25 LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK----KKDNLDSINELFPI 80 ++ RG+L + E+PF +G VF E + G GK K+ EL Sbjct: 81 MKERGILPPRPWMERPFYISCTGG-VF----EPYVPPEGDGKMSAVSKEGAKQKFELLEK 135 Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T+ +R I S DF+P +F +A+ Y + E + + +++ R Y + Sbjct: 136 KTKSMMAVRKIRSFDDDFEPPEFAAQAQEIYIQAHNLLMEKNKYKLREIITERAYPEMMH 195 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINAS----IEENTVY--ITIRIVGQFISASYDK 191 +++ + K +KS ++ ++++A I ++ ++ +T+R Q I A YD+ Sbjct: 196 NVTDKTIRWKFLKS----LEPPRVVHARCTDVISKDNIFGQVTVRFHTQQILAIYDR 248 >gi|332852444|ref|XP_003316109.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44 isoform 1 [Pan troglodytes] Length = 452 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T +++V+ +I+ V FD FL + N ++++ G++ ++ Y Sbjct: 294 TEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 353 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K+ S ++ ID++ + + E + I Q + + ++ DP Sbjct: 354 PIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDP 413 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLI 226 + +++ +W R+ NP W L+ Sbjct: 414 DKVLRMLYVWALCRDQDELNPYVAWRLL 441 >gi|2809420|gb|AAB97740.1| translocase of inner mitochondrial membrane Tim44 precursor [Homo sapiens] Length = 452 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T +++V+ +I+ V FD FL + N ++++ G++ ++ Y Sbjct: 294 TEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 353 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K+ S ++ ID++ + + E + I Q + + ++ DP Sbjct: 354 PIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDP 413 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLI 226 + +++ +W R+ NP W L+ Sbjct: 414 DKVLRMLYVWALCRDQDELNPYAAWRLL 441 >gi|33636719|ref|NP_006342.2| mitochondrial import inner membrane translocase subunit TIM44 precursor [Homo sapiens] gi|25014073|sp|O43615|TIM44_HUMAN RecName: Full=Mitochondrial import inner membrane translocase subunit TIM44; Flags: Precursor gi|21708003|gb|AAH33628.1| Translocase of inner mitochondrial membrane 44 homolog (yeast) [Homo sapiens] gi|119589360|gb|EAW68954.1| translocase of inner mitochondrial membrane 44 homolog (yeast), isoform CRA_a [Homo sapiens] gi|119589361|gb|EAW68955.1| translocase of inner mitochondrial membrane 44 homolog (yeast), isoform CRA_a [Homo sapiens] gi|123980796|gb|ABM82227.1| translocase of inner mitochondrial membrane 44 homolog (yeast) [synthetic construct] gi|123995621|gb|ABM85412.1| translocase of inner mitochondrial membrane 44 homolog (yeast) [synthetic construct] gi|158260291|dbj|BAF82323.1| unnamed protein product [Homo sapiens] gi|307685105|dbj|BAJ20483.1| translocase of inner mitochondrial membrane 44 homolog [synthetic construct] Length = 452 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T +++V+ +I+ V FD FL + N ++++ G++ ++ Y Sbjct: 294 TEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 353 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K+ S ++ ID++ + + E + I Q + + ++ DP Sbjct: 354 PIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDP 413 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLI 226 + +++ +W R+ NP W L+ Sbjct: 414 DKVLRMLYVWALCRDQDELNPYAAWRLL 441 >gi|301773124|ref|XP_002921985.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-like, partial [Ailuropoda melanoleuca] Length = 452 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 34/189 (17%), Positives = 77/189 (40%), Gaps = 5/189 (2%) Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100 F+ FF K + + D +I + D + LF T +++V+ +I+ V FD Sbjct: 255 FNRFFEMKMKYDESD-NALIRASRALTDKVTDLLGGLFS-KTEMSEVLTEILRVDPAFDK 312 Query: 101 KDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159 + FL + N ++++ G++ ++ Y + ++ S ++ I Sbjct: 313 ERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQARALGLQFHSRILDI 372 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 D++ + + E + I Q + + ++ DP+ +++ +W R+ Sbjct: 373 DNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEGDPDKVLRMLYVWALCRDQDEL 432 Query: 220 NP--NWVLI 226 NP W L+ Sbjct: 433 NPYAAWRLL 441 >gi|326934236|ref|XP_003213198.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-like [Meleagris gallopavo] Length = 435 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 36/189 (19%), Positives = 77/189 (40%), Gaps = 5/189 (2%) Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100 F+ FF K + + D I + D I LF T +++V+ +I+ V FD Sbjct: 238 FNRFFEMKMKYDESD-NAFIRASRAVTDKVTDLIGGLFS-KTEMSEVLTEILKVDPSFDK 295 Query: 101 KDFLNEA-RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159 FL + R+ ++++ G++ ++ Y + K+ S ++ I Sbjct: 296 DRFLKQCERDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKAMGLQFHSRILDI 355 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 D++ + + E + I Q + ++ ++ DP+ +++ +W R+ Sbjct: 356 DNIDLAMGKMMEQGPVLIITFQAQVVMVIKNQKGEVVEGDPDKVLRMLYVWALCRDQDEL 415 Query: 220 NP--NWVLI 226 NP W L+ Sbjct: 416 NPYAAWRLL 424 >gi|4103602|gb|AAD01797.1| putative mitochondrial inner membrane protein import receptor [Homo sapiens] Length = 415 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T +++V+ +I+ V FD FL + N ++++ G++ ++ Y Sbjct: 257 TEMSEVLTEILRVDPPFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 316 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K+ S ++ ID++ + + E + I Q + + ++ DP Sbjct: 317 PIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDP 376 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLI 226 + +++ +W R+ NP W L+ Sbjct: 377 DKVLRMLYVWALCRDQDELNPYAAWRLL 404 >gi|332852446|ref|XP_512338.3| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44 isoform 2 [Pan troglodytes] Length = 415 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T +++V+ +I+ V FD FL + N ++++ G++ ++ Y Sbjct: 257 TEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 316 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K+ S ++ ID++ + + E + I Q + + ++ DP Sbjct: 317 PIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDP 376 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLI 226 + +++ +W R+ NP W L+ Sbjct: 377 DKVLRMLYVWALCRDQDELNPYVAWRLL 404 >gi|260773108|ref|ZP_05882024.1| hypothetical protein VIB_001575 [Vibrio metschnikovii CIP 69.14] gi|260612247|gb|EEX37450.1| hypothetical protein VIB_001575 [Vibrio metschnikovii CIP 69.14] Length = 289 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 39/223 (17%), Positives = 89/223 (39%), Gaps = 39/223 (17%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFS---GKYVFSKRDE---RGIITLGKGK 66 IL+F I F +F R L K G+ P ++ + F + E + + G G Sbjct: 99 ILIFGLIGFALFKLARHFLAGKQGSLNPRQPAYNTNVHRQSFEQAPEQEFKPAASSGFGS 158 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 N + +P G FD F+N +R Y + ++ ++ I Sbjct: 159 TMHN--DVPHNYPPG----------------FDKIAFINGSREHYRILQGAWNHNQLETI 200 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E+ V ++ D + R+ ++ ++ ++ + D +I+ A ++ ++++ G+ Sbjct: 201 EEYVSQSLFSDLK---AEREKLDQQPQTEVMYV-DAEIVRADYDDRKAQLSLQFTGRCRD 256 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + + +++DIW R++ N W+++ + Sbjct: 257 LGDETEE-----------EILDIWHLERDLTQPNAPWLIVGIQ 288 >gi|62897685|dbj|BAD96782.1| translocase of inner mitochondrial membrane 44 homolog [Homo sapiens] Length = 452 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T +++V+ +I+ V FD FL + N ++++ G++ ++ Y Sbjct: 294 TEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 353 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K+ S ++ ID++ + + E + I Q + + ++ DP Sbjct: 354 PIQQAKALGLQFHSRILDIDNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKGEVVEGDP 413 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLI 226 + +++ +W R+ NP W L+ Sbjct: 414 DKVLRMLYVWALCRDQDELNPYAAWRLL 441 >gi|148224361|ref|NP_001087692.1| translocase of inner mitochondrial membrane 44 [Xenopus laevis] gi|51703695|gb|AAH81090.1| MGC82677 protein [Xenopus laevis] Length = 451 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 4/158 (2%) Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEAIVDSFFEGKVHAIEKLV 130 D I LF T +++V+ +I+ V +FD FL R+ I+++ G + ++ Sbjct: 284 DLIGGLFS-KTEMSEVLTEILKVDPNFDKDKFLKLCERDIIPNILEAMIRGDLDVLKDWC 342 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 Y + KS S ++ ID++ + + E + I Q + A + Sbjct: 343 YEATYSQLAHPIQQAKSMGLQFNSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMAITN 402 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLI 226 + ++ D + +++ +W R+ NP W L+ Sbjct: 403 QRGDIVEGDQDKVLRMLYVWALCRDQDELNPYAAWRLL 440 >gi|281349988|gb|EFB25572.1| hypothetical protein PANDA_010903 [Ailuropoda melanoleuca] Length = 405 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 34/189 (17%), Positives = 77/189 (40%), Gaps = 5/189 (2%) Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100 F+ FF K + + D +I + D + LF T +++V+ +I+ V FD Sbjct: 208 FNRFFEMKMKYDESD-NALIRASRALTDKVTDLLGGLFS-KTEMSEVLTEILRVDPAFDK 265 Query: 101 KDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159 + FL + N ++++ G++ ++ Y + ++ S ++ I Sbjct: 266 ERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQARALGLQFHSRILDI 325 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 D++ + + E + I Q + + ++ DP+ +++ +W R+ Sbjct: 326 DNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEGDPDKVLRMLYVWALCRDQDEL 385 Query: 220 NP--NWVLI 226 NP W L+ Sbjct: 386 NPYAAWRLL 394 >gi|291411565|ref|XP_002722049.1| PREDICTED: translocase of inner mitochondrial membrane 44 [Oryctolagus cuniculus] Length = 452 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 35/189 (18%), Positives = 76/189 (40%), Gaps = 5/189 (2%) Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100 F+ FF K + + D +I + D + LF T +++V+ +I+ V FD Sbjct: 255 FNRFFEMKMKYDESD-NALIRASRALTDKVTDLLGGLFS-KTEMSEVLTEILRVDPAFDK 312 Query: 101 KDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159 FL + N I+++ G++ ++ Y + K+ S ++ + Sbjct: 313 DRFLQQCENDIIPNILEAMISGELDILKDWCYEATYSQLAHPIQQAKALGFQFHSRILDV 372 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 D++ + + E + I Q + + ++ DP+ +++ +W R+ Sbjct: 373 DNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEGDPDKVLRMLYVWALCRDQDEL 432 Query: 220 NP--NWVLI 226 NP W L+ Sbjct: 433 NPYAAWRLL 441 >gi|300798484|ref|NP_001179583.1| mitochondrial import inner membrane translocase subunit TIM44 [Bos taurus] gi|297476712|ref|XP_002688909.1| PREDICTED: translocase of inner mitochondrial membrane 44 homolog (yeast) [Bos taurus] gi|296485872|gb|DAA27987.1| translocase of inner mitochondrial membrane 44 homolog [Bos taurus] Length = 454 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 26/148 (17%), Positives = 60/148 (40%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T +++V+ +I+ V FD FL + N ++++ G++ ++ Y Sbjct: 296 TEMSEVLTEILRVDPAFDKDRFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 355 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K+ S ++ ID + + + E + I Q + + ++ DP Sbjct: 356 PIQQAKALGLQFHSRILDIDHIDLAMGKMMEQGPVLIITFQAQMVMVIKNPKGEVVEGDP 415 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLI 226 + +++ +W R+ NP W L+ Sbjct: 416 DKVLRMLYVWALCRDQDELNPYAAWRLL 443 >gi|156048528|ref|XP_001590231.1| predicted protein [Sclerotinia sclerotiorum 1980] gi|154693392|gb|EDN93130.1| predicted protein [Sclerotinia sclerotiorum 1980 UF-70] Length = 135 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDF---NDSLSTRKSNEKNVK 153 D+ P+D N ++ + FEGK+ + ++ D R+YQ+F D + + E+N K Sbjct: 10 DYTPQDIKNPWPMNFHLALGGDFEGKIEVLVEVRDERIYQNFYKGKDFELMKNTPERNAK 69 Query: 154 SSLVG 158 ++G Sbjct: 70 DPVIG 74 >gi|296232753|ref|XP_002761726.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44 [Callithrix jacchus] Length = 452 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 34/189 (17%), Positives = 75/189 (39%), Gaps = 5/189 (2%) Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100 F+ FF K + + D +I + D + LF T +++ + +I+ V FD Sbjct: 255 FNRFFEMKVKYDESDN-ALIRASRALTDKVTDLLGGLFS-KTEMSEALTEILRVDPAFDK 312 Query: 101 KDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159 FL + N ++++ G++ ++ Y + K+ S ++ I Sbjct: 313 DRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDI 372 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 D++ + + E + I Q + + ++ DP+ +++ +W R+ Sbjct: 373 DNVDLAMGKMMEQGPVLIITFQAQLVMLVRNPKGEVVEGDPDKVLRMLYVWALCRDQDEL 432 Query: 220 NP--NWVLI 226 NP W L+ Sbjct: 433 NPYAAWRLL 441 >gi|126323825|ref|XP_001376780.1| PREDICTED: similar to Translocase of inner mitochondrial membrane 44 homolog (yeast) [Monodelphis domestica] Length = 443 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 35/189 (18%), Positives = 77/189 (40%), Gaps = 5/189 (2%) Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100 F+ FF K + + D +I + + D + LF T +++V+ +I+ V FD Sbjct: 246 FNRFFEMKMKYDESD-NTLIRVSRAVTDKITDLVGGLFS-KTEMSEVLTEILKVDPTFDK 303 Query: 101 KDFLNEA-RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159 FL + R+ ++++ G++ ++ Y + KS S ++ I Sbjct: 304 DRFLQQCERDIIPNVLEAMITGELDILKDWCYEATYSQLAHPIHQAKSMGLQFHSRILDI 363 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 ++ + + E + I Q + + ++ DP+ +++ +W R+ Sbjct: 364 SNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGDVVEGDPDKVLRMLYVWALCRDQTEL 423 Query: 220 NP--NWVLI 226 NP W L+ Sbjct: 424 NPYAAWRLL 432 >gi|255641370|gb|ACU20962.1| unknown [Glycine max] Length = 181 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 27/145 (18%), Positives = 58/145 (40%), Gaps = 19/145 (13%) Query: 96 TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNE------ 149 T + F NEA N Y+ I +G + K V ++ + + R++ Sbjct: 30 TGYSKNQFYNEAANMYKEINTLIAKGDKRTLRKAVTENMFSALKNEIKQRETAWSRVYWE 89 Query: 150 --------KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201 + +++ L+G+D + + + +T+ I+ + +YD +++ D Sbjct: 90 MVEPVVKIRTLRARLIGVD-----RKDLNKTFIQLTLEILAKQKFEAYDSKGSVVAGDKS 144 Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLI 226 V DIW F +++ + W L Sbjct: 145 KEVLVRDIWVFEKSMFHAGATWRLC 169 >gi|125976736|ref|XP_001352401.1| GA10857 [Drosophila pseudoobscura pseudoobscura] gi|54641147|gb|EAL29897.1| GA10857 [Drosophila pseudoobscura pseudoobscura] Length = 625 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 29/47 (61%) Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 SR +Q D S + E+N++ L G+D+++ I AS+E++TV T Sbjct: 567 SRTHQVSRDLRSAADNAEQNLRQLLTGVDNLRQIAASLEQSTVQSTA 613 >gi|89073249|ref|ZP_01159779.1| hypothetical protein SKA34_19790 [Photobacterium sp. SKA34] gi|89050959|gb|EAR56423.1| hypothetical protein SKA34_19790 [Photobacterium sp. SKA34] Length = 291 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 27/130 (20%), Positives = 62/130 (47%), Gaps = 15/130 (11%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 +F+ FL+ +R+ Y I ++ ++ I++ V S ++ D + + S E++ + Sbjct: 173 NFNMNSFLSGSRDHYRIIQGAWNHNELAKIKEYVSSALFADLQ-AERAKLSGEQHTEVMY 231 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 V D +++ A + N+ ++I+ G++ KD S I + D+W R++ Sbjct: 232 V---DAELVRADYDANSAQLSIQFSGRY------KD-----SQEGIEEDINDVWHLERDL 277 Query: 217 PPSNPNWVLI 226 N W+++ Sbjct: 278 KTPNAPWLIV 287 >gi|297703381|ref|XP_002828619.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-like [Pongo abelii] Length = 451 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 25/148 (16%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T +++V+ +I+ V FD FL + N ++++ G++ ++ Y Sbjct: 293 TEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 352 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K+ S ++ ID++ + + E + I Q + + ++ +P Sbjct: 353 PIQQAKALGLQFHSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGNP 412 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLI 226 + +++ +W R+ NP W L+ Sbjct: 413 DEVLRMLYVWALCRDQDELNPYAAWRLL 440 >gi|170068221|ref|XP_001868783.1| mitochondrial import inner membrane translocase subunit tim44 [Culex quinquefasciatus] gi|167864292|gb|EDS27675.1| mitochondrial import inner membrane translocase subunit tim44 [Culex quinquefasciatus] Length = 431 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 28/148 (18%), Positives = 59/148 (39%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ + +I + FD K FL + N I+++ G + ++ Y Sbjct: 273 TELSETLTEICKIDPSFDQKQFLRDCENDIIPNILEAMIRGDLEILKDWCFESTYNIIAT 332 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 ++ + + S ++ I+++ + + E + + Q I D N ++ DP Sbjct: 333 PIAQAQKAGFFLDSKILDIENVDLAMGKVMEQGPVLIVTFQTQQIMCVRDSKNAVVEGDP 392 Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226 E + +W R+ NP W L+ Sbjct: 393 EKVMRCNYVWVLCRDPNDLNPRSAWRLM 420 >gi|209694565|ref|YP_002262493.1| putative transport protein [Aliivibrio salmonicida LFI1238] gi|208008516|emb|CAQ78689.1| putative transport protein [Aliivibrio salmonicida LFI1238] Length = 316 Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust. Identities = 24/133 (18%), Positives = 62/133 (46%), Gaps = 17/133 (12%) Query: 98 FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157 FD + F+N +R Y + ++ ++ I++ V +Y D L ++N + + + V Sbjct: 199 FDLQGFINGSREHYRILQGAWNHNQLETIQEYVSISLYND----LVQERANLEGEQHTDV 254 Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL-ISSDPEIFGKVIDIWTFVRNI 216 D +++ A ++ ++++ G++ +D++ + D + D+W R++ Sbjct: 255 MFVDAEVVRAEHNASSAQLSLQFSGRY------RDSVEGLQED------ITDVWHLERDL 302 Query: 217 PPSNPNWVLISTK 229 N W++I + Sbjct: 303 TQPNAPWLIIGIQ 315 >gi|298498003|ref|ZP_07007810.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|297542336|gb|EFH78386.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 272 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 36/183 (19%), Positives = 74/183 (40%), Gaps = 27/183 (14%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSG--KYVFSKRDERGI---ITLGKG 65 IL+ I F +F +R L K G N+ +SG + F + + ++G G Sbjct: 98 ILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQPQSMGGG 157 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + +P G FD F+N AR Y + ++ ++ Sbjct: 158 FGSAAQSDVPHNYPAG----------------FDRVAFVNGAREHYRILQGAWNHNQLET 201 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 I + V +++D L ++N + + + V D +I+ A + N ++++ G+++ Sbjct: 202 IREYVSPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYV 257 Query: 186 SAS 188 + S Sbjct: 258 TLS 260 >gi|114328920|ref|YP_746077.1| transporter [Granulibacter bethesdensis CGDNIH1] gi|114317094|gb|ABI63154.1| transporter [Granulibacter bethesdensis CGDNIH1] Length = 326 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 3/88 (3%) Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197 FN+ L+ S + + V + + A E Y T+ ++ I A+YD ++ Sbjct: 235 FNEQLTALASRGLHNTVTNVTLQKGDLSEAWREGTLEYATVAMLFSMIDATYDSSGRVVE 294 Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 D + WTFVR+ P P W+L Sbjct: 295 GDASQLQTATEFWTFVRS--PGGP-WIL 319 >gi|297275995|ref|XP_001098363.2| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44 [Macaca mulatta] Length = 461 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T +++V+ +I+ V FD FL + N ++++ G++ ++ Y Sbjct: 303 TEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAY 362 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K+ S ++ ID++ + + E + I Q + + ++ DP Sbjct: 363 PIQQAKALGLQFHSRILDIDNIDLAMGKMMEPGPVLIITFQAQLVVVVRNPKGEVVEGDP 422 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLI 226 + +++ +W R+ NP W L+ Sbjct: 423 DKVLRMLYVWALCRDQDELNPYAAWRLL 450 >gi|254425847|ref|ZP_05039564.1| hypothetical protein S7335_414 [Synechococcus sp. PCC 7335] gi|196188270|gb|EDX83235.1| hypothetical protein S7335_414 [Synechococcus sp. PCC 7335] Length = 515 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 8/95 (8%) Query: 55 DERGIITLGKGKKK-DNLDSINELFPIGT-RLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 D++ IIT +GK NLD + + GT + V D + +D P L A S + Sbjct: 168 DQQSIITYSQGKSYLYNLDGVEQATFAGTIQWGTVDGDYLIAVSDDRPGFLLYSAEGSLQ 227 Query: 113 AIVDSFFEGKVHAIEKLV-----DSRVYQDFNDSL 142 A + FF G V + +KLV +SR+Y +F+ SL Sbjct: 228 ATFEGFFRGFVPSEQKLVVTDNDESRLY-NFDGSL 261 >gi|170042852|ref|XP_001849125.1| 39S ribosomal protein L45 [Culex quinquefasciatus] gi|167866282|gb|EDS29665.1| 39S ribosomal protein L45 [Culex quinquefasciatus] Length = 336 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 19/202 (9%) Query: 25 LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK----KKDNLDSINELFPI 80 ++ RG+L + E+PF +G VF E I G GK K+ E Sbjct: 80 MKERGLLPPRPWLERPFHISCTGG-VF----EPYIPPEGDGKMSAVSKEGAKQKFEQLEK 134 Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T+ +R I S DF+P +F A++ Y ++ + + ++V R Y + Sbjct: 135 KTKSMMAIRKIRSYDDDFEPPEFAGYAQDIYIDTHNTLAAKNKYKLREIVTERAYPELIH 194 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINAS----IEENTVY--ITIRIVGQFISASYDKDNL 194 ++S + + K +KS ++ ++++A I ++ ++ +T+R Q I A YD+ Sbjct: 195 NVSDKTIHWKFLKS----LEPPRVVHARCTDVISKDNIFAQVTVRFHSQQILAIYDRFGR 250 Query: 195 LISSDPEIFGKVIDIWTFVRNI 216 L+ I ++ F +++ Sbjct: 251 LMHGSETIAKDCLEYVVFEKHV 272 >gi|119115002|ref|XP_310830.3| AGAP000291-PA [Anopheles gambiae str. PEST] gi|116130625|gb|EAA06726.3| AGAP000291-PA [Anopheles gambiae str. PEST] Length = 401 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNS-YEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ + +I + FD K FL + N ++++ G++ + Y Sbjct: 243 TELSETLTEICKIDPSFDQKQFLRDCENDIIPNVLEAIVRGELEVLRDWCFESTYNIIAT 302 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 ++ + + S ++ I+++ + + E + + Q I D +I DP Sbjct: 303 PIAQAQKAGCRLDSKILDIENVDLAMGKVMEQGPVLIVTFQTQQIMCVRDGKGAVIEGDP 362 Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226 E + +W R+ +P W L+ Sbjct: 363 EKVMRCHHVWVLCRDPNELDPKAAWRLM 390 >gi|290993354|ref|XP_002679298.1| predicted protein [Naegleria gruberi] gi|284092914|gb|EFC46554.1| predicted protein [Naegleria gruberi] Length = 240 Score = 35.4 bits (80), Expect = 5.7, Method: Compositional matrix adjust. Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 14/129 (10%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV---HAIEKLVDSRVYQDFNDSL-- 142 + D + DF P D+ +E ++ Y IV+ F G + KL +F ++ Sbjct: 5 VEDYMGELYDFYP-DYWDEGQHGYWGIVNGFQSGTIFFNDNTTKLDTLNPSSNFMCAVRY 63 Query: 143 --STRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 S + SNE K L + I +A+ +Y+T+R +G+ D D++ + +P Sbjct: 64 IVSNKPSNEIAAKDCLYSSKQLDIFSATASSFGIYVTVRNLGR------DYDSVRLGLNP 117 Query: 201 EIFGKVIDI 209 E G + + Sbjct: 118 ERLGSGVHV 126 >gi|91206049|ref|YP_538404.1| hypothetical protein RBE_1234 [Rickettsia bellii RML369-C] gi|157826585|ref|YP_001495649.1| hypothetical protein A1I_01080 [Rickettsia bellii OSU 85-389] gi|91069593|gb|ABE05315.1| unknown [Rickettsia bellii RML369-C] gi|157801889|gb|ABV78612.1| hypothetical protein A1I_01080 [Rickettsia bellii OSU 85-389] Length = 211 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 46/227 (20%), Positives = 91/227 (40%), Gaps = 43/227 (18%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---------SKRDERGIITLG 63 +L+FA I FF+ +L LG + ++ + G+ V S +E+ + T Sbjct: 8 LLIFAGIAFFIINKLITTLGATSDDDPAKQKSYFGEPVIKDVTHSSNKSYEEEKDLPTAQ 67 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 K NL + + + V + + + F P F+N A+ +++ I+++ ++ + Sbjct: 68 DIKTFKNLIVEQNITAVVDGMETVHKRLNA----FQPIKFINNAKIAFQMIIEAAYKNQT 123 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE-----NTVYITI 178 + +LVD R ++F + + S D +NA E N ++I + Sbjct: 124 EELAELVDKRFLEEF-----------EKISDSYGNFFDSTALNAKYSEIYTFGNNIFIKL 172 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 G+ + DK ++ + WTF RN +W L Sbjct: 173 LFQGKNV---VDK-----------IEELKEEWTFTRNANTKEVDWFL 205 >gi|221102145|ref|XP_002170372.1| PREDICTED: similar to mitochondrial ribosomal protein L45, partial [Hydra magnipapillata] Length = 98 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 5/81 (6%) Query: 148 NEKNVKSSLVGIDDMKIINAS---IEENTVY--ITIRIVGQFISASYDKDNLLISSDPEI 202 + NV + + ++ ++INA+ + EN +Y +T+R+ + I D+ N +++ DP+ Sbjct: 9 QQTNVLAIVKEVEKPRVINAALSAVSENDLYAQVTVRLHTEQILTIRDRFNRIVTGDPKT 68 Query: 203 FGKVIDIWTFVRNIPPSNPNW 223 VID F R++P W Sbjct: 69 PRSVIDYVVFERHLPDPYGKW 89 >gi|289741253|gb|ADD19374.1| mitochondrial import inner membrane translocase subunit TIM44 [Glossina morsitans morsitans] Length = 421 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 28/161 (17%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEA-------------RNSYEAIVDSFFEGKVHAIEK 128 T L++ M ++ + +FD K FL + R E + D FE + Sbjct: 262 TELSETMTELCKIDPNFDQKQFLRDCEVDIIPNILEATVRGDLEILKDWCFESTYN---- 317 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L+ + + Q L + S ++ I+++ ++ + E + I Q I Sbjct: 318 LIATPINQAIKSGLC--------LDSKILDIENIDLVMGKVMEQGPVLIITFQAQQIMCL 369 Query: 189 YDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPN--WVLI 226 D+ N ++ DPE +V +W R+ NP W L+ Sbjct: 370 KDRATNKIVEGDPEKVMRVNHVWVLCRDPNELNPKAAWRLL 410 >gi|160877221|ref|YP_001556537.1| import inner membrane translocase subunit Tim44 [Shewanella baltica OS195] gi|160862743|gb|ABX51277.1| import inner membrane translocase subunit Tim44 [Shewanella baltica OS195] gi|315269425|gb|ADT96278.1| import inner membrane translocase subunit Tim44 [Shewanella baltica OS678] Length = 287 Score = 35.0 bits (79), Expect = 8.3, Method: Compositional matrix adjust. Identities = 44/222 (19%), Positives = 96/222 (43%), Gaps = 34/222 (15%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG-NEKPF---SGFFSGKYVFSKRDERGIITLGKGKKK 68 IL+ + F +F +R V+ K G ++P +G + + ++ G T Sbjct: 94 ILIIGLLAFVLFKIVRTVMASKAGAQQRPAYAGAGQPNPNMQRQQTEQTGFAT------- 146 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 N +S + F G + V D+ + FD FL AR+ Y+ + ++ E + I++ Sbjct: 147 -NTNSGSNGF--GQATSAVPFDLPA---GFDLPSFLEGARSHYKTLQLAWNENDLSKIQE 200 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 V +Y + LS ++ + + V D +++ A+ N ++++ G++ Sbjct: 201 YVSIELYNE----LSNQRRELVGDQHTEVMFLDAELVRATHNANLAEVSVKFSGRY---- 252 Query: 189 YDKDNLL-ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 +D + + D + +IW RN+ +N W+++ + Sbjct: 253 --RDTVEGVEED------IKEIWHLERNVTQANSPWLIVGVE 286 >gi|195388820|ref|XP_002053076.1| GJ23681 [Drosophila virilis] gi|194151162|gb|EDW66596.1| GJ23681 [Drosophila virilis] Length = 428 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 11/152 (7%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEAR-----NSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136 T L++ M ++V + +FD K+FL + N EAIV G + ++ Y Sbjct: 270 TELSETMTELVKIDPNFDQKEFLYDCEKDIIPNVLEAIV----RGDLEILKDWCFESTYN 325 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196 + K + + S ++ I+++++ + E + I Q I D+ ++ Sbjct: 326 IIATPIMQAKKSGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKAQVV 385 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPN--WVLI 226 +P+ +V +W R+ NP W L+ Sbjct: 386 EGNPDKVMRVHYVWVLCRDRNELNPKAAWRLM 417 >gi|17508985|ref|NP_491780.1| hypothetical protein T09B4.9 [Caenorhabditis elegans] gi|6016367|sp|O02161|TIM44_CAEEL RecName: Full=Probable mitochondrial import inner membrane translocase subunit tim-44; Flags: Precursor gi|2039379|gb|AAB53011.1| Hypothetical protein T09B4.9 [Caenorhabditis elegans] Length = 425 Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust. Identities = 28/165 (16%), Positives = 70/165 (42%), Gaps = 4/165 (2%) Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLV 130 + I +F +++V+ +I + +FD +++L I+++F + ++ Sbjct: 256 EKIGSVFSGQNEVSEVLTEIHKIDANFDKQEWLRFCETKIIPNILEAFIRFDLEVLQSWC 315 Query: 131 DSRVYQDFNDSLSTRKSNEKNVK-SSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 R Y + + + + K S ++ I+ +++ + E + I I+ + Sbjct: 316 HERAYTQLSTVVKEYQKMHFSTKDSRIIDINKVEMATGKMMEQGPVLIISFQVYMINVTK 375 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKLGE 232 + D ++ DP+ ++ IW R++ NP W L+ + E Sbjct: 376 NADGKVVEGDPDNPKRINHIWVLCRDVEEYNPALAWKLLEVHMQE 420 >gi|332264171|ref|XP_003281120.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44 [Nomascus leucogenys] Length = 455 Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust. Identities = 31/167 (18%), Positives = 65/167 (38%), Gaps = 15/167 (8%) Query: 72 DSINELFPIG----TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE------G 121 D + +L G T +++V+ +I+ V FD FL + N I+ + E G Sbjct: 281 DKVTDLLGEGSVSKTEMSEVLTEILRVDPAFDKDRFLKQCEND---IIPNVLEVGAAPPG 337 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 + + + Y + K+ S ++ ID++ + + E + I Sbjct: 338 PLPGSRSWLHQQTYSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQ 397 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLI 226 Q + + ++ DP+ +++ +W R+ NP W L+ Sbjct: 398 AQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRLL 444 >gi|170584097|ref|XP_001896855.1| Tim44-like domain containing protein [Brugia malayi] gi|158595793|gb|EDP34297.1| Tim44-like domain containing protein [Brugia malayi] Length = 773 Score = 34.7 bits (78), Expect = 9.5, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 64/142 (45%), Gaps = 2/142 (1%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 + +++V+ +I V +F+ ++L ++++F G + ++ R Y + Sbjct: 614 SEISEVLSEIQKVDPNFEKNEWLRFCEKEIIPNVLEAFIRGDLKILKDWCYERAYNILSA 673 Query: 141 SLST-RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199 +++ +K N S ++ I+ ++++ + E+ I I ++ + + ++ D Sbjct: 674 TVNEYKKINFNTTDSRIIDINRVEMVTGKMMEHGPVIIITFQAYMVNIVRNMEGKVVEGD 733 Query: 200 PEIFGKVIDIWTFVRNIPPSNP 221 P +V +W R++ NP Sbjct: 734 PNSPVRVHHVWVMCRDMEEYNP 755 >gi|157118792|ref|XP_001653263.1| mitochondrial import inner membrane translocase subunit tim44 [Aedes aegypti] gi|108875602|gb|EAT39827.1| mitochondrial import inner membrane translocase subunit tim44 [Aedes aegypti] Length = 433 Score = 34.7 bits (78), Expect = 9.5, Method: Compositional matrix adjust. Identities = 30/148 (20%), Positives = 59/148 (39%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ + +I + +FD K FL + N I+++ G + ++ Y Sbjct: 275 TELSETLTEICKIDPNFDQKQFLRDCENDIIPNILEAMIRGDLEVLKDWCFESTYNIIAT 334 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 +S + + S ++ I+++ + + E + I Q I D +I DP Sbjct: 335 PISQAQKLGYYLDSKVLDIENVDLAMGKVMEQGPVLIITFQTQQIMCVRDSKGNVIEGDP 394 Query: 201 EIFGKVIDIWTFVRNIPPSNPN--WVLI 226 E + +W R+ NP W L+ Sbjct: 395 EKVMRCNYVWVLCRDPNDLNPKSAWRLM 422 >gi|90075058|dbj|BAE87209.1| unnamed protein product [Macaca fascicularis] Length = 453 Score = 34.7 bits (78), Expect = 9.6, Method: Compositional matrix adjust. Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T +++V+ +I+ V FD FL + N ++++ G++ ++ Y Sbjct: 295 TEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAY 354 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K+ S ++ ID++ + + E + I Q + + ++ DP Sbjct: 355 PIQQAKALGLQFHSRILDIDNIDLAMGKMMEPGPVLIITFQAQLVMVVRNPKGEVVEGDP 414 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLI 226 + +++ +W R+ NP W L+ Sbjct: 415 DKVLRMLYVWALYRDQDELNPYAAWRLL 442 Searching..................................................done Results from round 2 >gi|218661852|ref|ZP_03517782.1| import inner membrane translocase subunit Tim44 [Rhizobium etli IE4771] Length = 234 Score = 294 bits (753), Expect = 6e-78, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 131/233 (56%), Gaps = 6/233 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER--GIITLG 63 M S DF+ L F +F QLR VLG++TGNEKP ++ + ++TL Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60 Query: 64 K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + G+ +D +I+ + GT LN+ +R + F+PK+FLN AR +YE IV ++ Sbjct: 61 RRDATGEDEDRFAAIDAVAAPGTPLNESLRALNKADPSFNPKEFLNGARMAYEMIVMAYA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY F+ ++ R+S + VKS+ VGID +I +A + + IT+R Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGERESRGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 IV Q ISA+YDK + LI D E +V D+WTF R+ +PNW L++T+ Sbjct: 181 IVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATESEH 233 >gi|218673282|ref|ZP_03522951.1| import inner membrane translocase subunit Tim44 [Rhizobium etli GR56] Length = 234 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 82/233 (35%), Positives = 130/233 (55%), Gaps = 6/233 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER--GIITLG 63 M S DF+ L F +F QLR VLG++TGNEKP ++ + ++TL Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60 Query: 64 K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + +D +I+ + GT LN+ +R + F+PK+FLN AR +YE IV ++ Sbjct: 61 RRDATAEDEDRFAAIDAVAAPGTPLNESLRALNKADPSFNPKEFLNGARMAYEMIVMAYA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY F+ ++ R++ + VKS+ VGID +I +A + + IT+R Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 IV Q ISA+YDK + LI D E +V D+WTF R+ +PNW L++T+ Sbjct: 181 IVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATESEH 233 >gi|39933380|ref|NP_945656.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris CGA009] gi|39653005|emb|CAE25747.1| conserved unknown protein [Rhodopseudomonas palustris CGA009] Length = 289 Score = 291 bits (744), Expect = 7e-77, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 117/233 (50%), Gaps = 11/233 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64 D ++F + F+FL+LR VLG++TG+E+P + + + + + ++++ Sbjct: 56 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDNNVVSMPGTVIDQ 115 Query: 65 ------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 D + + L + I + FD + F+ A+++YE IV +F Sbjct: 116 APMAPNADVVPPSDRWKGIAEPDSELEHGLNAIAQNDSSFDAQHFITGAKSAYEMIVMAF 175 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 G ++ L+ S VY+ F+ ++ R+ N+ V++ V I+ ++I+A + + T +T+ Sbjct: 176 ANGDRRSLRDLLSSEVYESFDAAIKDREKNDLKVETRFVSIEKAELISAELRDRTAMLTL 235 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + V Q ISA+ DK ++ P+ + D+WTF R+ +PNW L+ T G Sbjct: 236 KFVSQMISATRDKTGAVVDGSPDKVVDITDVWTFARDTSSRDPNWKLVGTGSG 288 >gi|328545867|ref|YP_004305976.1| Import inner membrane translocase subunit Tim44 [polymorphum gilvum SL003B-26A1] gi|326415607|gb|ADZ72670.1| Import inner membrane translocase subunit Tim44 [Polymorphum gilvum SL003B-26A1] Length = 242 Score = 290 bits (743), Expect = 9e-77, Method: Composition-based stats. Identities = 76/238 (31%), Positives = 128/238 (53%), Gaps = 14/238 (5%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRD------------- 55 D ++F + FVF +LR VLGK+TGNE+P +S ++ Sbjct: 5 FDIYNIIFLALAIFVFFRLRSVLGKRTGNERPPFDPYSKPARDNRAPGGAEAGGVDNVIP 64 Query: 56 -ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 + G G + ++++ P G+ LN +R I+SV F+P+ FL AR +YE I Sbjct: 65 LPGKPVEAGAGDTERGAVVLDKVAPSGSALNAALRQILSVDRSFEPEQFLQGARAAYEMI 124 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 V +F EG ++ L+ VY F ++S R++ + ++S+ VGID I+ A+++ + Sbjct: 125 VTAFAEGDRKTLKNLLSKEVYDGFVTAISEREARGETIESTFVGIDKADIVEAALKGSVA 184 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +T+R+ + ISA+ DKD ++ DP +V+DIWTF R+ +PNW L++T+ E Sbjct: 185 QVTVRLQSELISATRDKDGHVVDGDPSRVTEVVDIWTFARDTTSRDPNWKLVATESAE 242 >gi|299133204|ref|ZP_07026399.1| import inner membrane translocase subunit Tim44 [Afipia sp. 1NLS2] gi|298593341|gb|EFI53541.1| import inner membrane translocase subunit Tim44 [Afipia sp. 1NLS2] Length = 234 Score = 289 bits (741), Expect = 1e-76, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 114/233 (48%), Gaps = 10/233 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 D ++F + F+FL+LR VLG++TG+E+P + + D + G + Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPYDRVTRDVAPTGNDNNVVRMPGTAVDQA 61 Query: 70 NLDSINEL----------FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 L + + L + + + F+ + F++ A+++YE IV +F Sbjct: 62 TLAPSADPVSPRERWKGIAAPDSELASGLDQVAAADPSFNAQHFISGAKSAYEMIVLAFA 121 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 G ++ L+ S VY F + R+ + V++ ID ++++A + + ++T+R Sbjct: 122 NGDRRTLKDLLSSDVYDGFEAVIKGREQQGEKVETKFASIDKAELVSAGVRDKLAHLTVR 181 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 V Q I+A+ DKD +I +PE V D+WTF R++ +PNW L+ T+ G Sbjct: 182 FVSQMITATRDKDGAVIDGNPEKLTDVTDVWTFSRDVSSRDPNWKLVGTESGH 234 >gi|209551513|ref|YP_002283430.1| import inner membrane translocase subunit Tim44 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537269|gb|ACI57204.1| import inner membrane translocase subunit Tim44 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 234 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 129/233 (55%), Gaps = 6/233 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER--GIITLG 63 M S DF+ L F +F QLR VLG++TGNEKP ++ + ++TL Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60 Query: 64 KG----KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + +D +I+ GT LN+ +R + F PK+FLN AR +YE IV ++ Sbjct: 61 RRDATTEDEDRFAAIDAFAAPGTPLNESLRALNKADPAFSPKEFLNGARMAYEMIVMAYA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY F+ ++ R++ + VKS+ VGID +I +A + + IT+R Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGERETRGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 I+ Q ISA+YDK ++LI D E +V D+WTF R+ +PNW L++T+ Sbjct: 181 IISQLISATYDKADVLIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATESEH 233 >gi|27375753|ref|NP_767282.1| hypothetical protein blr0642 [Bradyrhizobium japonicum USDA 110] gi|27348891|dbj|BAC45907.1| blr0642 [Bradyrhizobium japonicum USDA 110] Length = 235 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 11/233 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG---- 65 D ++F + F+FL+LR VLG++TGNE+P + + ++ ++T+ Sbjct: 2 DIYTIIFLALAVFIFLRLRSVLGQRTGNERPPFDHTAARNALGGAQDKNVVTMPGKVIDQ 61 Query: 66 -------KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + D L GT L + + IV + FDP+ F++ AR +YE IV +F Sbjct: 62 APLAPTVEPTPPSDRWKGLTEPGTALAQGLDAIVDKDSTFDPRHFISGARGAYEMIVLAF 121 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 G A+ L+ S VY+ F+ ++ R+ NE+ ++ V ID +++ A + + T +TI Sbjct: 122 ANGDRRALRDLLSSEVYESFDAAIKEREKNEQKTETRFVSIDKAELVGAELRDRTAQLTI 181 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 R V Q ISA+ DK ++ + + DIWTF R+I +PNW L+ T Sbjct: 182 RFVSQMISATRDKAGNIVDGSADTVADITDIWTFARDITSRDPNWKLVGTGSA 234 >gi|86355677|ref|YP_467569.1| putative translocase transmembrane protein [Rhizobium etli CFN 42] gi|86279779|gb|ABC88842.1| putative translocase transmembrane protein [Rhizobium etli CFN 42] Length = 234 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 82/233 (35%), Positives = 126/233 (54%), Gaps = 6/233 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER--GIITLG 63 M S DF+ L F +F QLR VLG++TGNEKP +S + ++TL Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYSPREAAPPEAAEAGKVVTLP 60 Query: 64 K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + +D +I+ GT LN+ +R + F PK+FLN AR +YE +V ++ Sbjct: 61 RRDATADDEDRFSAIDAFAAPGTPLNESLRALNKADPSFSPKEFLNGARMAYEMVVMAYA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY F ++ R++ + VKS+ VGID +I +A + + IT+R Sbjct: 121 DGDRKTLKSLLSREVYDGFEAAIGEREARGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 IV Q ISA+YDK + LI D E +V D+WTF R+ +PNW L++T+ Sbjct: 181 IVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATESEH 233 >gi|116249774|ref|YP_765612.1| hypothetical protein RL0008 [Rhizobium leguminosarum bv. viciae 3841] gi|115254422|emb|CAK05496.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 234 Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 128/233 (54%), Gaps = 6/233 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER--GIITLG 63 M S DF+ L F +F QLR VLG++TGNEKP ++ + ++TL Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60 Query: 64 KG----KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + +D +I+ GT LN+ +R + F PK+FLN AR +YE IV ++ Sbjct: 61 RRDATTEDEDRFAAIDAFAAPGTPLNESLRALNKADPAFSPKEFLNGARMAYEMIVMAYA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY F+ ++ R++ + VKS+ VGID +I +A + + IT+R Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 I Q ISA+YDK ++LI D E +V D+WTF R+ +PNW L++T+ Sbjct: 181 IASQLISATYDKADVLIEGDAENVAEVNDVWTFARDTRSRDPNWKLVATESEH 233 >gi|227823867|ref|YP_002827840.1| putative import inner membrane translocase, subunit Tim44 [Sinorhizobium fredii NGR234] gi|227342869|gb|ACP27087.1| putative import inner membrane translocase, subunit Tim44 [Sinorhizobium fredii NGR234] Length = 233 Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 79/231 (34%), Positives = 128/231 (55%), Gaps = 6/231 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYV--FSKRDERGIITLG 63 M S DF+ F +FLQLR VLG++TGNE+P +S + RD ++ L Sbjct: 1 MGSFDFITFFFLIAAVVIFLQLRSVLGRRTGNERPPFDPYSPREAQGPEARDNGKVVQLP 60 Query: 64 K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + + +I+ GT LN +R + F P +FLN A+ +YE IV +F Sbjct: 61 RRESTAEDESRYAAIDGFSKPGTPLNGQLRALSDADPSFQPAEFLNGAKMAYEMIVMAFA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY+ F +++ R++ + VKS+ VGI+ I++A +++ +T+R Sbjct: 121 DGDRKTLKGLLSREVYEGFETAIAERETRGEVVKSTFVGIEKADIVHAELKDAEENVTVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 I+ Q ISA+YDK LI D + +V D+WTF R+I +PNW LI+T+ Sbjct: 181 IISQLISATYDKQGKLIDGDADSVAEVNDLWTFARDIRSRDPNWKLIATES 231 >gi|241206951|ref|YP_002978047.1| import inner membrane translocase subunit Tim44 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860841|gb|ACS58508.1| import inner membrane translocase subunit Tim44 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 234 Score = 287 bits (736), Expect = 6e-76, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 128/233 (54%), Gaps = 6/233 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER--GIITLG 63 M S DF+ L F +F QLR VLG++TGNEKP ++ + ++TL Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60 Query: 64 KG----KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + +D +I+ GT LN+ +R + F PK+FLN AR +YE IV ++ Sbjct: 61 RRDATTEDEDRFAAIDAFAAPGTPLNESLRALNKADPAFTPKEFLNGARMAYEMIVMAYA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY F+ ++ R++ + VKS+ VGID +I +A + + IT+R Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 I Q ISA+YDK ++LI D E +V D+WTF R+ +PNW L++T+ Sbjct: 181 IASQLISATYDKADVLIEGDAENVAEVNDVWTFARDTRSRDPNWKLVATESEH 233 >gi|222147023|ref|YP_002547980.1| Membrane associated transporter protein [Agrobacterium vitis S4] gi|221734013|gb|ACM34976.1| Membrane associated transporter protein [Agrobacterium vitis S4] Length = 232 Score = 287 bits (735), Expect = 9e-76, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 133/232 (57%), Gaps = 5/232 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKY--VFSKRDERGIITLG 63 M S DF+ L F +F QLR VLG++TGNEKP F+G+ ++ ++TL Sbjct: 1 MGSNDFVTLFFLVAAVLIFWQLRSVLGRRTGNEKPPKDPFAGRPDAASPAAEDARVVTLP 60 Query: 64 KGKKKD---NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 + + D +I+ P GT LN+ +R +V V F PK+FLN AR +YE IV +F Sbjct: 61 RRDEADGEERQTAIDAYAPAGTPLNQQLRQVVEVDPSFVPKEFLNGARMAYEMIVTAFAA 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 G +++ L+ VY F+ +++ R+ + +KS+ VGID +I +A + + V IT+R+ Sbjct: 121 GDRKSLKDLLSREVYDGFDAAITEREQRGEVMKSTFVGIDKAEITSAEVRDQEVQITVRL 180 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 V Q ISA+YD +I D E G V DIWTF R+ +PNW LI+T+ + Sbjct: 181 VSQLISATYDSQGAVIEGDAESVGDVNDIWTFARDTRSRDPNWKLIATESDQ 232 >gi|222084209|ref|YP_002542735.1| translocase transmembrane protein [Agrobacterium radiobacter K84] gi|221721657|gb|ACM24813.1| translocase transmembrane protein [Agrobacterium radiobacter K84] Length = 233 Score = 287 bits (735), Expect = 9e-76, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 134/233 (57%), Gaps = 6/233 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYV---FSKRDERGIITL 62 M + DF+ + F +F QLR VLG++TGNEKP + + D ++TL Sbjct: 1 MGANDFVTIFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYGSPDQATGPNAPDAGKVVTL 60 Query: 63 GKG---KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + +D +I+ P GT LN +R++ F PK+F+N AR +YE IV +F Sbjct: 61 PRRDATEDEDRFAAIDAFTPAGTPLNDSLRELNKADPSFSPKEFVNGARMAYEMIVMAFA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G +A++ L+ VY+ F+ +++ R++ + VKS+ VGID I++A +++ +T+R Sbjct: 121 DGDRNALKGLLSREVYEGFDAAITDRETKGEKVKSTFVGIDKADIVSAEMKDTEATVTMR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 IV Q ISA+YDK LI D E ++ D+WTF R+ +PNW L++T+ + Sbjct: 181 IVSQMISATYDKAGTLIDGDAETVAEISDVWTFARDSRSRDPNWKLVATESEQ 233 >gi|90421823|ref|YP_530193.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisB18] gi|90103837|gb|ABD85874.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisB18] Length = 233 Score = 287 bits (735), Expect = 9e-76, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 9/230 (3%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 D ++F + F+FL+LR VLG+KTGNE+P + V +D + + Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQKTGNERPPFDRAARDVVRGAQDNVVPLPGAVVDQAP 61 Query: 70 NLDSINELFP---------IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 S + + P GT L + + IV+ + FDP+ FL AR +YE IV +F Sbjct: 62 QTPSADVVPPTDRWKGVAEPGTPLAQGLNAIVAQDSSFDPQHFLTGARGAYEMIVLAFAN 121 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 G A++ L+ VY F + R+ E+ ++ V ID ++++A + +T+R Sbjct: 122 GDRRALKDLLSPEVYDSFEAVIREREKQEQKTETRFVSIDKAELVSAEARDRAAQLTVRF 181 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 V Q I+ + DK ++ +P+ + D+WTF R++ +PNW L+ T Sbjct: 182 VSQMITVTRDKTGAIVDGNPDKVADITDVWTFARDVGSRDPNWKLVGTGS 231 >gi|319780601|ref|YP_004140077.1| import inner membrane translocase subunit Tim44 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166489|gb|ADV10027.1| import inner membrane translocase subunit Tim44 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 235 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 123/235 (52%), Gaps = 8/235 (3%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGK---YVFSKRDERGIITL 62 M DF + F +F QLR VLG++TG+E+P +S + + +++L Sbjct: 1 MGFFDFGTIFFLIAAVVIFFQLRNVLGRRTGSERPPFDPYSAARTGDKDAAQKSENVVSL 60 Query: 63 G-----KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117 D +I+ T LNK +R I F+PK F++ A+ +YE IV + Sbjct: 61 PRKRPPGEPAPDAYAAIDAFAKPDTDLNKGLRTIKDNDPSFEPKGFVDGAKMAYEMIVMA 120 Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 + +G ++ L+ VY F ++ R++ + ++SS VGID I++A ++ ++T Sbjct: 121 YADGDRKTLKNLLSREVYDGFVAAIGEREAKAEKIQSSFVGIDKADIVSAEMKGGEAHVT 180 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +RI+ + ISA+ DK +I DPE +V D+WTF R+ +PNW L++T+ + Sbjct: 181 LRIISELISATRDKAGAVIDGDPETVAEVKDVWTFARDTRSRDPNWKLVATEEED 235 >gi|260467422|ref|ZP_05813593.1| import inner membrane translocase subunit Tim44 [Mesorhizobium opportunistum WSM2075] gi|259028818|gb|EEW30123.1| import inner membrane translocase subunit Tim44 [Mesorhizobium opportunistum WSM2075] Length = 236 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 124/236 (52%), Gaps = 9/236 (3%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGK---YVFSKRDERGIITL 62 M DF + F +F QLR VLG++TG+E+P ++ + + +++L Sbjct: 1 MGFFDFGTIFFLIAAVVIFFQLRNVLGRRTGSERPPFDPYTAARTGDKDAAQKPENVVSL 60 Query: 63 G------KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116 + D +I+ T LNK +R I FDPK F++ A+ +YE IV Sbjct: 61 PRKRLPGEPAAPDAYAAIDAFAKPDTDLNKGLRTIKDNDPSFDPKGFVDGAKMAYEMIVM 120 Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 ++ +G ++ L+ V+ F ++ R++ + ++SS VGID I++A ++ ++ Sbjct: 121 AYADGDRKTLKNLLSREVFDGFVAAIGEREAKSEKIQSSFVGIDKADIVSAEMKGGEAHV 180 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 T+RI+ + ISA+ DK +I DPE +V D+WTF R+ +PNW L++T+ + Sbjct: 181 TLRIISELISATRDKAGTVIDGDPETVAEVKDVWTFARDTRSRDPNWKLVATEEED 236 >gi|239833115|ref|ZP_04681444.1| import inner membrane translocase subunit Tim44 [Ochrobactrum intermedium LMG 3301] gi|239825382|gb|EEQ96950.1| import inner membrane translocase subunit Tim44 [Ochrobactrum intermedium LMG 3301] Length = 253 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 125/219 (57%), Gaps = 4/219 (1%) Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73 +FLQLR VLG++TGNEKP + S + + +++L + + + + Sbjct: 35 IAAVIIFLQLRNVLGRRTGNEKPPFDPYTSARSADAAPAGSETDNVVSLPRRTGEKDFTA 94 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 I++ P GT +N +R I + FDP F++ + +YE IV SF +G ++ L+ Sbjct: 95 IDKAAPAGTPVNDGLRAIYAADPSFDPASFVDGVKIAYEMIVMSFADGDRKVLKNLLSKD 154 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 VY+ F ++ R++ ++V+SS VGID +I A ++ + ++T+ IV Q IS++YDKD Sbjct: 155 VYEGFVSAIDEREARGESVRSSFVGIDKAEITGAEMKGSEAHVTVNIVSQMISSTYDKDG 214 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 LI DPE ++ D+WTF R+ +PNW L++T+ + Sbjct: 215 KLIDGDPENVLEIKDLWTFARDTRSRDPNWKLVATEAED 253 >gi|192288736|ref|YP_001989341.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris TIE-1] gi|192282485|gb|ACE98865.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris TIE-1] Length = 235 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 117/233 (50%), Gaps = 11/233 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64 D ++F + F+FL+LR VLG++TG+E+P + + + + + ++++ Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDNNVVSMPGTVIDQ 61 Query: 65 ------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 D + + L + I + FD + F+ A+++YE IV +F Sbjct: 62 APMAPNADVVPPSDRWKGIAEPDSELEHGLNAIAQNDSSFDAQHFITGAKSAYEMIVMAF 121 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 G ++ L+ S VY+ F+ ++ R+ N+ V++ V I+ ++I+A + + T +T+ Sbjct: 122 ANGDRRSLRDLLSSEVYESFDAAIKDREKNDLKVETRFVSIEKAELISAELRDRTAMLTL 181 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + V Q ISA+ DK ++ P+ + D+WTF R+ +PNW L+ T G Sbjct: 182 KFVSQMISATRDKTGAVVDGSPDKVVDITDVWTFARDTSSRDPNWKLVGTGSG 234 >gi|118591473|ref|ZP_01548870.1| Calcium-binding EF-hand [Stappia aggregata IAM 12614] gi|118435801|gb|EAV42445.1| Calcium-binding EF-hand [Stappia aggregata IAM 12614] Length = 230 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 127/229 (55%), Gaps = 14/229 (6%) Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKR----DERGIITLGKGKKKDNLDS 73 + F+ +LR VLGK+TGNE+P +S R D+ +I L +D Sbjct: 2 GLAVFILFRLRSVLGKRTGNERPPFDPYSKPDQQRDRKNGNDQDNVIPLPNQPMQDAETV 61 Query: 74 ----------INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 I+++ P G+ LN ++ I+SV F+P+ FL AR +YE IV +F +G Sbjct: 62 EDTGRGGDVVIDKVAPAGSALNSALKQILSVDRSFEPEPFLEGARAAYEMIVMAFADGDK 121 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 A++ L+ VY+ F ++ R+ + ++S+ VGID +I+ A+++ +T +T++I Q Sbjct: 122 KALKNLLSREVYEGFVAAIDEREKRGETIESTFVGIDKAEIVEAALKNSTAQVTVKIHSQ 181 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ISA+ DK+ ++ DP +VIDIWTF R+ +PNW L++T+ E Sbjct: 182 LISATRDKNGEVVDGDPAKVSEVIDIWTFARDTTSRDPNWKLVATESAE 230 >gi|15963761|ref|NP_384114.1| putative translocase transmembrane protein [Sinorhizobium meliloti 1021] gi|307302564|ref|ZP_07582321.1| import inner membrane translocase subunit Tim44 [Sinorhizobium meliloti BL225C] gi|307316105|ref|ZP_07595549.1| import inner membrane translocase subunit Tim44 [Sinorhizobium meliloti AK83] gi|15072936|emb|CAC41395.1| Import inner membrane translocase subunit TIM44 [Sinorhizobium meliloti 1021] gi|306897945|gb|EFN28687.1| import inner membrane translocase subunit Tim44 [Sinorhizobium meliloti AK83] gi|306903234|gb|EFN33824.1| import inner membrane translocase subunit Tim44 [Sinorhizobium meliloti BL225C] Length = 233 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 79/231 (34%), Positives = 131/231 (56%), Gaps = 6/231 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYV---FSKRDERGIITL 62 M S DF+ F +FLQLR VLG++TG+E+P +S + + +D ++ L Sbjct: 1 MGSFDFITFFFLIAAVVIFLQLRSVLGRRTGSERPPFDPYSPRDIAQGPEAKDNGKVVQL 60 Query: 63 GK---GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + + +I + GT LN +R + +F+P +FLN A+ +YE IV +F Sbjct: 61 PRRETAEDESRYAAIEIVAKAGTPLNAQLRAMTDADPNFNPAEFLNGAKMAYEMIVMAFA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY+ F +++ R++ + VKS+ VGID I++A I++ IT+R Sbjct: 121 DGDRKTLKGLLSREVYEGFEAAIAEREAKGEVVKSTFVGIDKADIVHAEIKDAEENITVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 I+ Q ISA+YDK L+ D + +V D+WTF R+I +PNW LI+T+ Sbjct: 181 IISQLISATYDKQGKLVDGDADSVAEVNDLWTFARDIRSRDPNWKLIATES 231 >gi|91974901|ref|YP_567560.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisB5] gi|91681357|gb|ABE37659.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisB5] Length = 235 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 116/234 (49%), Gaps = 11/234 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64 D ++F + F+FL+LR VLG++TG+E+P + + + + + ++ + Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDNNVVPMPGTVIDQ 61 Query: 65 ------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 D + + L + ++ + FD FL A+++YE IV +F Sbjct: 62 SPTAPNADVVPPSDRWKGIAEPDSPLAHGLNAVLVQDSSFDANHFLTGAKSAYEMIVMAF 121 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 G A+ L+ + VY F+ ++ R+ NE+ ++ V ID +++ A + E+T +T+ Sbjct: 122 ANGDRRALRDLLSTEVYDSFDAAIKDREKNERKTETRFVAIDKAELLGAEVREHTAQLTV 181 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + V Q IS + DK ++ +P+ + D+WTF R+I +PNW L+ T G Sbjct: 182 KFVSQMISVTRDKAGAIVDGNPDKVADITDVWTFARDISSRDPNWKLVGTGSGH 235 >gi|325291461|ref|YP_004277325.1| hypothetical protein AGROH133_02812 [Agrobacterium sp. H13-3] gi|325059314|gb|ADY63005.1| hypothetical protein AGROH133_02812 [Agrobacterium sp. H13-3] Length = 232 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 87/232 (37%), Positives = 134/232 (57%), Gaps = 5/232 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKR--DERGIITLG 63 M DF+ L F +FLQLR VLG++TGNEKP ++ + V D+ ++TL Sbjct: 1 MGFSDFITLFFLVAAVLIFLQLRSVLGRRTGNEKPPFDPYTPRDVAKGPVTDDNKVVTLP 60 Query: 64 ---KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 + + ++ + L P+ T LN +R++++ F PK+FLN AR +YE IV F + Sbjct: 61 KRSEAEDENRFAEADALAPVDTALNTSLRELMTKDPTFRPKEFLNGARMAYEMIVMGFAD 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 G ++ L+ V+ F ++S R+S + VKS+ VGI+ I A I ++ IT+RI Sbjct: 121 GDRKTLKNLLSKEVFDGFEAAISERESRGEVVKSTFVGIEKADITQAGIRDSEEQITLRI 180 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 V Q ISA+YDKD L+ DP+ +V DIWTF R++ +PNW LI+T+ + Sbjct: 181 VSQLISATYDKDGKLVDGDPDAVAEVDDIWTFSRDVRSRDPNWKLIATESEQ 232 >gi|110635813|ref|YP_676021.1| import inner membrane translocase, subunit Tim44 [Mesorhizobium sp. BNC1] gi|110286797|gb|ABG64856.1| import inner membrane translocase, subunit Tim44 [Chelativorans sp. BNC1] Length = 235 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 127/235 (54%), Gaps = 8/235 (3%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDE-----RGII 60 M+ DF + F +F QLR VLG++TG+E+P ++ E ++ Sbjct: 1 MEFFDFGTIFFLVAAVVIFFQLRNVLGRRTGSERPPFDPYTAGRSRPAEAEKSVKNDTVV 60 Query: 61 TLGKGK---KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117 L + K ++ + I+++ GT LN+ +R I FDP F++ A+ +YE IV + Sbjct: 61 ALPRRKGLVDEERYNIIDKVAQPGTELNRGLRAIKDADPSFDPNTFVDGAKLAYEMIVMA 120 Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 F +G ++ L+ VY+ F ++ R+ + ++SS VGID II+A ++ + ++T Sbjct: 121 FADGDRRTLKNLLSREVYEGFVSAIDERERRSEKIESSFVGIDKATIISAEMKGSEAHVT 180 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +RIV + ISA+ D +I DPE +V DIWTF R+ +PNW L++T+ E Sbjct: 181 LRIVSELISATRDSGGSIIDGDPETVAEVKDIWTFARDTRSRDPNWKLVATEAEE 235 >gi|115522403|ref|YP_779314.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisA53] gi|115516350|gb|ABJ04334.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisA53] Length = 233 Score = 286 bits (731), Expect = 2e-75, Method: Composition-based stats. Identities = 60/232 (25%), Positives = 113/232 (48%), Gaps = 9/232 (3%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK- 68 D ++F + F+FL+LR VLG++TG+E+P + + ++ + Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGDERPPYDRAARDLLRGSQEGNVVPMPSPSIDPT 61 Query: 69 --------DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 D + + L + I + + FD + FL+ AR +YE IV +F Sbjct: 62 LAPSADVTPPSDRWKSVAAPDSPLEHGLNAIAAHDSGFDAQHFLSGARGAYEMIVLAFAN 121 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 G A++ L+ S VY F ++ R+ N+ ++ V ID +++ A + + + +T+R Sbjct: 122 GDRRALKDLLSSEVYDSFEAAIREREKNDHKTETRFVSIDKAELVTAEVRDRSAQLTVRF 181 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 V Q I+ + DK ++ +P+ + D+WTF R++ +PNW L+ T G+ Sbjct: 182 VSQMITVTRDKTGAIVDGNPDKVADITDVWTFARDVASRDPNWKLVGTGSGQ 233 >gi|150398408|ref|YP_001328875.1| import inner membrane translocase subunit Tim44 [Sinorhizobium medicae WSM419] gi|150029923|gb|ABR62040.1| import inner membrane translocase subunit Tim44 [Sinorhizobium medicae WSM419] Length = 234 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 80/232 (34%), Positives = 131/232 (56%), Gaps = 7/232 (3%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYV---FSKRDERGIITL 62 M S DF+ F +FLQLR VLG++TG+E+P +S + + +D ++ L Sbjct: 1 MGSFDFITFFFLIAAVVIFLQLRSVLGRRTGSERPPFDPYSSRDIAQGPEAKDNGKVVQL 60 Query: 63 GK----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + + + I + GT LN +R + +F+P +FLN A+ +YE IV +F Sbjct: 61 PRRDGAAEDESRYAEIETVAKAGTPLNAQLRAVTDADPNFNPVEFLNGAKMAYEMIVMAF 120 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 +G ++ L+ VY+ F +++ R++ + VKS+ VGID I++A I+++ IT+ Sbjct: 121 ADGDRKTLKGLLSREVYEGFEAAIAERENKGEVVKSTFVGIDKADIVHAEIKDSEENITV 180 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 RI+ Q ISA+YDK L+ D E +V D+WTF R+I +PNW LI+T+ Sbjct: 181 RIISQLISATYDKQGKLVDGDAESVAEVNDLWTFSRDIRSRDPNWKLIATES 232 >gi|307943366|ref|ZP_07658710.1| import inner membrane translocase subunit Tim44 [Roseibium sp. TrichSKD4] gi|307772996|gb|EFO32213.1| import inner membrane translocase subunit Tim44 [Roseibium sp. TrichSKD4] Length = 244 Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 133/240 (55%), Gaps = 16/240 (6%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDE------RGIITL 62 D ++F + F+ +L+ VLGK+TGNE+P +S + + + +I + Sbjct: 5 FDVYNIIFLGLAVFILFRLKSVLGKRTGNERPPFDPYSKQDDAGQSSQGGKSQSDNVIPM 64 Query: 63 GKG----------KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 +++ I++L P GT LN+ ++ I+SV F+P++F+ A +YE Sbjct: 65 PGQESYQETGIREPEENGEVVIDKLAPQGTALNEALKQILSVDRTFEPREFIEGASAAYE 124 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 IV +F EG +++L+ V+ F ++ R+ ++ ++S+ VGID +I+ A++++ Sbjct: 125 MIVTAFAEGDRKTLKQLLSKDVFDGFIMAIDEREKRDEVIESTFVGIDKAEIVEAALKDG 184 Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 T +T+++ Q ISA+ DKD ++ DP +VIDIWTF R+ +PNW L++T+ E Sbjct: 185 TAQVTVKVQSQLISATCDKDGEVVDGDPNKVSEVIDIWTFARDTGSRDPNWKLVATESAE 244 >gi|316931716|ref|YP_004106698.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris DX-1] gi|315599430|gb|ADU41965.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris DX-1] Length = 258 Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 64/233 (27%), Positives = 119/233 (51%), Gaps = 11/233 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64 D ++F + F+FL+LR VLG++TGNE+P + + + S + + +I++ Sbjct: 25 DIYTIIFLALAVFIFLRLRNVLGQRTGNERPPFDRAAARDMISGKQDNNVISMPGTVIDQ 84 Query: 65 ------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 D + + L + I + FD + F++ A+++YE IV +F Sbjct: 85 APIAPNADVVPPSDRWKGIAEPDSELEHGLNAIAQHDSSFDARHFVDGAKSAYEMIVMAF 144 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 G ++ L+ S VY+ F+ ++ R+ N+ V+S V I+ ++I+A + + T +T+ Sbjct: 145 ANGDRRSLRDLLSSEVYESFDAAIKDREKNDLKVESRFVAIEKAELISAELRDRTAMLTL 204 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + V Q ISA+ DK ++ P+ + D+WTF R+ +PNW L+ T G Sbjct: 205 KFVSQMISATRDKTGAVVDGSPDKVTDITDVWTFARDTSSRDPNWKLVGTGSG 257 >gi|209883544|ref|YP_002287401.1| import inner membrane translocase, subunit Tim44 [Oligotropha carboxidovorans OM5] gi|209871740|gb|ACI91536.1| import inner membrane translocase, subunit Tim44 [Oligotropha carboxidovorans OM5] Length = 234 Score = 284 bits (727), Expect = 6e-75, Method: Composition-based stats. Identities = 62/232 (26%), Positives = 114/232 (49%), Gaps = 10/232 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 D ++F + F+FL+LR VLG++TG+E+P + S D + G + Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRITRDMARSGNDNNVVKMPGTTIDQT 61 Query: 70 NLDSINELFP----------IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 L + P T L + ++ + F+ + F++ A+++YE IV +F Sbjct: 62 PLAPAADPIPAQDRWKGIAEPDTPLATGLDEVAAADPSFNAQHFVSGAKSAYEMIVQAFA 121 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 G ++ L+ + VY F + R+ + V++ ID +++A + + ++T+R Sbjct: 122 SGDRRMLKDLLSAEVYDGFEAVIKGREQRGEKVETRFASIDKAALVSAGVRDRIAHLTVR 181 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 V Q I+ + DKD +I +PE V D+WTF R++ +PNW L+ T+ G Sbjct: 182 FVSQMITVTRDKDGAVIDGNPEKLTDVTDVWTFSRDVSSRDPNWKLVGTESG 233 >gi|92115749|ref|YP_575478.1| import inner membrane translocase, subunit Tim44 [Nitrobacter hamburgensis X14] gi|91798643|gb|ABE61018.1| import inner membrane translocase, subunit Tim44 [Nitrobacter hamburgensis X14] Length = 234 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 123/233 (52%), Gaps = 10/233 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 D ++F + F+FL+LR VLG++TG+E+P + + + +D+ + G + Sbjct: 2 DIYTIIFLALAVFIFLRLRSVLGQRTGSERPPYDRATREVLHGTQDKNVVPMAGPVIDQA 61 Query: 70 NLDSINE----------LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + L GT L + I + + FDPK F++ AR++YE IV +F Sbjct: 62 SSAPTADAASTPDRWKNLAEPGTPLALGLDAIAAHDSSFDPKHFISGARSAYEMIVLAFA 121 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 G ++ L+ S VY+ F+ ++ R+ E+ ++ V ID +++I A + ++ +T+R Sbjct: 122 NGDRRTLKDLLSSDVYESFDAAIKDREKLEQKTETRFVSIDKVELIGAELRDSAEQLTVR 181 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + Q IS + DK ++ +PE + D+WTF R+IP +PNW L+ T + Sbjct: 182 FISQMISMTRDKTGAIVDGNPEKISDITDVWTFARDIPSRDPNWKLVGTGSTD 234 >gi|86747526|ref|YP_484022.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris HaA2] gi|86570554|gb|ABD05111.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris HaA2] Length = 235 Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 114/230 (49%), Gaps = 11/230 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64 D ++F + F+FL+LR VLG++TG+E+P + + + + + ++++ Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDTNVVSMPGSVIDQ 61 Query: 65 ------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 D + + L + + + + FD FL+ A+ +YE IV +F Sbjct: 62 SPIAPSADVVPPSDRWKGIAEPDSPLEHGLNAVFTQDSSFDANHFLSGAKGAYEMIVMAF 121 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 G A++ L+ S VY+ F ++ R+ NE ++ V I+ +++ A + ++ +T+ Sbjct: 122 ANGDRRALKDLLSSEVYESFEAAIKDREKNELKTETRFVAIEKAELLGAEVRDHVAQLTV 181 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + V Q IS + DK ++ P+ + D+WTF R+I +PNW L+ T Sbjct: 182 KFVSQMISVTRDKAGAVVDGSPDKVADITDVWTFARDISSRDPNWKLVGT 231 >gi|23502922|ref|NP_699049.1| hypothetical protein BR2074 [Brucella suis 1330] gi|82700829|ref|YP_415403.1| calcium-binding EF-hand [Brucella melitensis biovar Abortus 2308] gi|225626454|ref|ZP_03784493.1| import inner membrane translocase subunit Tim44 [Brucella ceti str. Cudo] gi|237816425|ref|ZP_04595418.1| Tim44-like domain protein [Brucella abortus str. 2308 A] gi|256370472|ref|YP_003107983.1| hypothetical protein BMI_I2096 [Brucella microti CCM 4915] gi|23348955|gb|AAN30964.1| conserved hypothetical protein [Brucella suis 1330] gi|82616930|emb|CAJ12031.1| Calcium-binding EF-hand [Brucella melitensis biovar Abortus 2308] gi|225618111|gb|EEH15154.1| import inner membrane translocase subunit Tim44 [Brucella ceti str. Cudo] gi|237788492|gb|EEP62707.1| Tim44-like domain protein [Brucella abortus str. 2308 A] gi|256000635|gb|ACU49034.1| hypothetical protein BMI_I2096 [Brucella microti CCM 4915] Length = 235 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 124/219 (56%), Gaps = 4/219 (1%) Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73 +FLQLR VLG++TGNEKP + S + + +++L + + + + Sbjct: 17 IAAVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTA 76 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 I+++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ Sbjct: 77 IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKD 136 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 VY+ F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D Sbjct: 137 VYEGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDG 196 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +I DP+ ++ D+WTF R+ +PNW L++T+ + Sbjct: 197 KVIDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 235 >gi|161619988|ref|YP_001593875.1| import inner membrane translocase subunit Tim44 [Brucella canis ATCC 23365] gi|163844092|ref|YP_001628496.1| import inner membrane translocase subunit Tim44 [Brucella suis ATCC 23445] gi|189025131|ref|YP_001935899.1| Calcium-binding EF-hand [Brucella abortus S19] gi|254690207|ref|ZP_05153461.1| Calcium-binding EF-hand [Brucella abortus bv. 6 str. 870] gi|254694697|ref|ZP_05156525.1| Calcium-binding EF-hand [Brucella abortus bv. 3 str. Tulya] gi|254696324|ref|ZP_05158152.1| Calcium-binding EF-hand [Brucella abortus bv. 2 str. 86/8/59] gi|254700706|ref|ZP_05162534.1| Calcium-binding EF-hand [Brucella suis bv. 5 str. 513] gi|254705077|ref|ZP_05166905.1| Calcium-binding EF-hand [Brucella suis bv. 3 str. 686] gi|254709052|ref|ZP_05170863.1| Calcium-binding EF-hand [Brucella pinnipedialis B2/94] gi|254713521|ref|ZP_05175332.1| Calcium-binding EF-hand [Brucella ceti M644/93/1] gi|254716123|ref|ZP_05177934.1| Calcium-binding EF-hand [Brucella ceti M13/05/1] gi|254718117|ref|ZP_05179928.1| Calcium-binding EF-hand [Brucella sp. 83/13] gi|254731240|ref|ZP_05189818.1| Calcium-binding EF-hand [Brucella abortus bv. 4 str. 292] gi|256030577|ref|ZP_05444191.1| Calcium-binding EF-hand [Brucella pinnipedialis M292/94/1] gi|256060039|ref|ZP_05450221.1| Calcium-binding EF-hand [Brucella neotomae 5K33] gi|260169483|ref|ZP_05756294.1| Calcium-binding EF-hand [Brucella sp. F5/99] gi|260546180|ref|ZP_05821920.1| calcium-binding EF-hand protein [Brucella abortus NCTC 8038] gi|260567455|ref|ZP_05837925.1| calcium-binding EF-hand protein [Brucella suis bv. 4 str. 40] gi|260755747|ref|ZP_05868095.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 6 str. 870] gi|260758971|ref|ZP_05871319.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 4 str. 292] gi|260760695|ref|ZP_05873038.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 2 str. 86/8/59] gi|261215024|ref|ZP_05929305.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 3 str. Tulya] gi|261217893|ref|ZP_05932174.1| import inner membrane translocase subunit Tim44 [Brucella ceti M13/05/1] gi|261316550|ref|ZP_05955747.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis B2/94] gi|261321257|ref|ZP_05960454.1| import inner membrane translocase subunit Tim44 [Brucella ceti M644/93/1] gi|261324015|ref|ZP_05963212.1| import inner membrane translocase subunit Tim44 [Brucella neotomae 5K33] gi|261751215|ref|ZP_05994924.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 5 str. 513] gi|261755779|ref|ZP_05999488.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 3 str. 686] gi|261759008|ref|ZP_06002717.1| calcium-binding EF-hand protein [Brucella sp. F5/99] gi|265983069|ref|ZP_06095804.1| import inner membrane translocase subunit Tim44 [Brucella sp. 83/13] gi|265987624|ref|ZP_06100181.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M292/94/1] gi|306839744|ref|ZP_07472546.1| import inner membrane translocase subunit Tim44 [Brucella sp. NF 2653] gi|306842810|ref|ZP_07475450.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO2] gi|306843493|ref|ZP_07476094.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO1] gi|161336799|gb|ABX63104.1| import inner membrane translocase subunit Tim44 [Brucella canis ATCC 23365] gi|163674815|gb|ABY38926.1| import inner membrane translocase subunit Tim44 [Brucella suis ATCC 23445] gi|189020703|gb|ACD73425.1| Calcium-binding EF-hand [Brucella abortus S19] gi|260096287|gb|EEW80163.1| calcium-binding EF-hand protein [Brucella abortus NCTC 8038] gi|260156973|gb|EEW92053.1| calcium-binding EF-hand protein [Brucella suis bv. 4 str. 40] gi|260669289|gb|EEX56229.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 4 str. 292] gi|260671127|gb|EEX57948.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 2 str. 86/8/59] gi|260675855|gb|EEX62676.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 6 str. 870] gi|260916631|gb|EEX83492.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 3 str. Tulya] gi|260922982|gb|EEX89550.1| import inner membrane translocase subunit Tim44 [Brucella ceti M13/05/1] gi|261293947|gb|EEX97443.1| import inner membrane translocase subunit Tim44 [Brucella ceti M644/93/1] gi|261295773|gb|EEX99269.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis B2/94] gi|261299995|gb|EEY03492.1| import inner membrane translocase subunit Tim44 [Brucella neotomae 5K33] gi|261738992|gb|EEY26988.1| calcium-binding EF-hand protein [Brucella sp. F5/99] gi|261740968|gb|EEY28894.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 5 str. 513] gi|261745532|gb|EEY33458.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 3 str. 686] gi|264659821|gb|EEZ30082.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M292/94/1] gi|264661661|gb|EEZ31922.1| import inner membrane translocase subunit Tim44 [Brucella sp. 83/13] gi|306276184|gb|EFM57884.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO1] gi|306287004|gb|EFM58515.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO2] gi|306405204|gb|EFM61481.1| import inner membrane translocase subunit Tim44 [Brucella sp. NF 2653] Length = 231 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 124/219 (56%), Gaps = 4/219 (1%) Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73 +FLQLR VLG++TGNEKP + S + + +++L + + + + Sbjct: 13 IAAVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTA 72 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 I+++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ Sbjct: 73 IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKD 132 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 VY+ F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D Sbjct: 133 VYEGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDG 192 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +I DP+ ++ D+WTF R+ +PNW L++T+ + Sbjct: 193 KVIDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231 >gi|75674306|ref|YP_316727.1| hypothetical protein Nwi_0107 [Nitrobacter winogradskyi Nb-255] gi|74419176|gb|ABA03375.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 234 Score = 282 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 115/232 (49%), Gaps = 10/232 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL------- 62 D ++F + F+FL+LR VLG++TG+E+P + + + +D + Sbjct: 2 DIYTIIFLALAVFIFLRLRSVLGQRTGSERPPYDRATREVLGGTQDNNVVPVPGTVINQS 61 Query: 63 ---GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 D + GT L + I + + FDP FL+ AR++YE IV +F Sbjct: 62 SAAPSADVGGAADRWKSVAEPGTPLALGLDAIAAQDSSFDPAHFLSGARSAYEMIVLAFA 121 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 G ++ L+ S VY+ F+ ++ R+ E+ ++ V ID +++I A + + +T+R Sbjct: 122 NGDRRTLKDLLSSDVYESFDAAIKDRERLEQKTETRFVSIDKVELIGAEVRDGAEQLTVR 181 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + Q IS + DK ++ +PE + D+WTF R+I +PNW L+ T Sbjct: 182 FISQMISVTRDKTGAIVDGNPEKISDITDVWTFARDISSRDPNWKLVGTGSA 233 >gi|256112399|ref|ZP_05453320.1| transporter [Brucella melitensis bv. 3 str. Ether] gi|265993836|ref|ZP_06106393.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 3 str. Ether] gi|262764817|gb|EEZ10738.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 3 str. Ether] Length = 231 Score = 282 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 123/219 (56%), Gaps = 4/219 (1%) Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73 +FLQLR VLG++TGNEKP + S + +++L + + + + Sbjct: 13 IAAVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGGPDNVVSLPRRANEKDYTA 72 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 I+++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ Sbjct: 73 IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKD 132 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 VY+ F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D Sbjct: 133 VYEGFVAAIDEREKQGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDG 192 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +I DP+ ++ D+WTF R+ +PNW L++T+ + Sbjct: 193 KVIDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231 >gi|225853505|ref|YP_002733738.1| import inner membrane translocase subunit Tim44 [Brucella melitensis ATCC 23457] gi|256045678|ref|ZP_05448556.1| transporter [Brucella melitensis bv. 1 str. Rev.1] gi|256263013|ref|ZP_05465545.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 2 str. 63/9] gi|260562979|ref|ZP_05833465.1| calcium-binding EF-hand protein [Brucella melitensis bv. 1 str. 16M] gi|265992099|ref|ZP_06104656.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 1 str. Rev.1] gi|225641870|gb|ACO01784.1| import inner membrane translocase subunit Tim44 [Brucella melitensis ATCC 23457] gi|260152995|gb|EEW88087.1| calcium-binding EF-hand protein [Brucella melitensis bv. 1 str. 16M] gi|263003165|gb|EEZ15458.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 1 str. Rev.1] gi|263092886|gb|EEZ17061.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 2 str. 63/9] gi|326410072|gb|ADZ67137.1| import inner membrane translocase subunit Tim44 [Brucella melitensis M28] gi|326539788|gb|ADZ88003.1| import inner membrane translocase subunit Tim44 [Brucella melitensis M5-90] Length = 231 Score = 282 bits (721), Expect = 4e-74, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 123/219 (56%), Gaps = 4/219 (1%) Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73 +FLQLR VLG++TGNEKP + S + +++L + + + + Sbjct: 13 IAAVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGGPDNVVSLPRRANEKDYTA 72 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 I+++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ Sbjct: 73 IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKD 132 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 VY+ F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D Sbjct: 133 VYEGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDG 192 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +I DP+ ++ D+WTF R+ +PNW L++T+ + Sbjct: 193 KVIDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231 >gi|62290918|ref|YP_222711.1| hypothetical protein BruAb1_2049 [Brucella abortus bv. 1 str. 9-941] gi|62197050|gb|AAX75350.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941] Length = 231 Score = 281 bits (720), Expect = 4e-74, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 124/219 (56%), Gaps = 4/219 (1%) Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73 +FLQLR VLG++TGNEKP + S + + +++L + + + + Sbjct: 13 IAAVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTA 72 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 I+++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ Sbjct: 73 IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKD 132 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 VY+ F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D Sbjct: 133 VYEGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDG 192 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +I DP+ ++ D+WTF R+ +PNW L++T+ + Sbjct: 193 KVIDGDPDNMVEIKDLWTFARDTNSRDPNWKLVATEAED 231 >gi|297247302|ref|ZP_06931020.1| hypothetical protein BAYG_00201 [Brucella abortus bv. 5 str. B3196] gi|297174471|gb|EFH33818.1| hypothetical protein BAYG_00201 [Brucella abortus bv. 5 str. B3196] Length = 235 Score = 281 bits (720), Expect = 5e-74, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 124/219 (56%), Gaps = 4/219 (1%) Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73 +FLQLR VLG++TGNEKP + S + + +++L + + + + Sbjct: 17 IAAVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTA 76 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 I+++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ Sbjct: 77 IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKD 136 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 VY+ F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D Sbjct: 137 VYEGFVAAIDEREKWGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDG 196 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +I DP+ ++ D+WTF R+ +PNW L++T+ + Sbjct: 197 KVIDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 235 >gi|294851303|ref|ZP_06791976.1| hypothetical protein BAZG_00203 [Brucella sp. NVSL 07-0026] gi|294819892|gb|EFG36891.1| hypothetical protein BAZG_00203 [Brucella sp. NVSL 07-0026] Length = 235 Score = 281 bits (720), Expect = 5e-74, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 123/219 (56%), Gaps = 4/219 (1%) Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73 +FLQLR VLG +TGNEKP + S + + +++L + + + + Sbjct: 17 IAAVIIFLQLRNVLGCRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTA 76 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 I+++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ Sbjct: 77 IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKD 136 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 VY+ F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D Sbjct: 137 VYEGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDG 196 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +I DP+ ++ D+WTF R+ +PNW L++T+ + Sbjct: 197 KVIDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 235 >gi|158426224|ref|YP_001527516.1| mitochondrial import inner membrane translocase [Azorhizobium caulinodans ORS 571] gi|158333113|dbj|BAF90598.1| mitochondrial import inner membrane translocase [Azorhizobium caulinodans ORS 571] Length = 279 Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 117/235 (49%), Gaps = 12/235 (5%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI--ITLGKGKK 67 D ++F + F+F++LR VLG++TG E+P F+ + + + + Sbjct: 45 DIYTIIFLALAVFIFVRLRSVLGQRTGKERPPYDPFTPRPPAAPSSDNVVSLPERVGDAP 104 Query: 68 KDNLDSINELFP----------IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117 + +++ P G+ L + + I ++ DFD K F+ A+++YE IV + Sbjct: 105 QRPTAPVSQPLPGTFRWKGVTEEGSPLAEALDQIAAIEPDFDAKHFVEGAKSAYEMIVLA 164 Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 F G ++ L+ V+ F ++S R+ + ++S V I+ +II AS+ T +T Sbjct: 165 FAAGDRRTLKDLLSKDVFDGFVAAISEREGRGETMESRFVAIEKAEIIEASVRGRTGQVT 224 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +R V + ISA+ +D ++ + V D+WTF R + +PNW L++T+ + Sbjct: 225 LRFVSKIISATRSRDGAVVDGSADTVADVTDVWTFARELGARDPNWKLVATEAAQ 279 >gi|256158573|ref|ZP_05456463.1| calcium-binding EF-hand [Brucella ceti M490/95/1] gi|256253984|ref|ZP_05459520.1| calcium-binding EF-hand [Brucella ceti B1/94] gi|261221124|ref|ZP_05935405.1| import inner membrane translocase subunit Tim44 [Brucella ceti B1/94] gi|265997084|ref|ZP_06109641.1| import inner membrane translocase subunit Tim44 [Brucella ceti M490/95/1] gi|260919708|gb|EEX86361.1| import inner membrane translocase subunit Tim44 [Brucella ceti B1/94] gi|262551552|gb|EEZ07542.1| import inner membrane translocase subunit Tim44 [Brucella ceti M490/95/1] Length = 231 Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 124/219 (56%), Gaps = 4/219 (1%) Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73 +FLQLR VLG++TGNEKP + S + + +++L + + + + Sbjct: 13 IAAVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTA 72 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 I+++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ Sbjct: 73 IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKD 132 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 VY+ F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D Sbjct: 133 VYEGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQIISSTLDRDG 192 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +I DP+ ++ D+WTF R+ +PNW L++T+ + Sbjct: 193 KVIDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231 >gi|256258462|ref|ZP_05463998.1| calcium-binding EF-hand [Brucella abortus bv. 9 str. C68] gi|260884773|ref|ZP_05896387.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 9 str. C68] gi|260874301|gb|EEX81370.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 9 str. C68] Length = 231 Score = 280 bits (718), Expect = 8e-74, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 124/219 (56%), Gaps = 4/219 (1%) Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73 +FLQLR VLG++TGNEKP + S + + +++L + + + + Sbjct: 13 IAAVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTA 72 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 I+++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ Sbjct: 73 IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKD 132 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 VY+ F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D Sbjct: 133 VYEGFVAAIDEREKWGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDG 192 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +I DP+ ++ D+WTF R+ +PNW L++T+ + Sbjct: 193 KVIDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231 >gi|148559170|ref|YP_001259879.1| hypothetical protein BOV_1994 [Brucella ovis ATCC 25840] gi|148370427|gb|ABQ60406.1| conserved hypothetical protein [Brucella ovis ATCC 25840] Length = 231 Score = 280 bits (717), Expect = 9e-74, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 123/219 (56%), Gaps = 4/219 (1%) Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73 +FLQLR VLG++TGNEKP + S + + +++L + + + + Sbjct: 13 IAAVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTA 72 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 I+++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ Sbjct: 73 IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDRKVLKNLLSKD 132 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 VY+ F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS+ D+D Sbjct: 133 VYEGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSILDRDG 192 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +I DP+ ++ D+WTF R+ +PNW L++T+ + Sbjct: 193 KVIDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231 >gi|85714085|ref|ZP_01045074.1| hypothetical protein NB311A_08013 [Nitrobacter sp. Nb-311A] gi|85699211|gb|EAQ37079.1| hypothetical protein NB311A_08013 [Nitrobacter sp. Nb-311A] Length = 234 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 117/232 (50%), Gaps = 10/232 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL------- 62 D ++F + F+FL+LR VLG++TG+E+P + + + +D+ + Sbjct: 2 DIYTIIFLALAVFIFLRLRSVLGQRTGSERPPYDGATREILRGAQDKNVVPVPGTVINQS 61 Query: 63 ---GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + D +L GT L + I + + FDP FL+ AR++YE IV +F Sbjct: 62 SATPTADVGPSADRWKDLTEPGTALALGLDAIAAQDSSFDPGHFLSGARSAYEMIVLAFA 121 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 G ++ L+ S VY+ F+ ++ R+ E+ ++ V ID +++I A + + +T+R Sbjct: 122 NGDRRTLKDLLSSDVYESFDAAIKDRERLEQKTETRFVSIDKVELIGAELRDGAEQLTVR 181 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + Q IS + DK ++ +PE + D+WTF R I +PNW L+ T Sbjct: 182 FISQMISVTRDKTGAIVDGNPERISDITDVWTFAREISSRDPNWKLVGTGSA 233 >gi|319407969|emb|CBI81623.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 230 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 128/228 (56%), Gaps = 4/228 (1%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGK 64 D ++++ I VF+QLR VLGK+TG E+P +SG + D Sbjct: 3 FDVVLVIALVIMVVVFMQLRNVLGKRTGFERPPFDPYSGCSKKQIETETVDHSLSFPHQA 62 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 +K + I+ + P G+ LN +R I ++F P+ F+N + +YE I+ +F +G Sbjct: 63 NARKKDFSEIDAIAPEGSALNDGLRAICQADSNFSPQFFVNGVQIAYEMIMTAFAQGDRD 122 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 ++KL+ V++ F ++ R+ E+ V+ + VGI+ ++ + A +++N ++T+RIV + Sbjct: 123 QLKKLLSQDVFESFCAAIERREKREEKVEFTFVGINKVEFVAAEMQKNEEFLTVRIVSEI 182 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 IS +Y+K N I DPE ++ D+WTFVRN +PNW L +T+ G+ Sbjct: 183 ISVTYNKQNECIDGDPEAIVEIKDVWTFVRNSLSQDPNWKLFATEDGD 230 >gi|148251774|ref|YP_001236359.1| hypothetical protein BBta_0156 [Bradyrhizobium sp. BTAi1] gi|146403947|gb|ABQ32453.1| hypothetical protein BBta_0156 [Bradyrhizobium sp. BTAi1] Length = 233 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 113/231 (48%), Gaps = 10/231 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDE----------RGI 59 D ++F + F+F++LR VLG++TG+E+ + V D Sbjct: 2 DIYTIIFLALAVFIFVRLRAVLGQRTGSERTPFDRAARNAVQGAPDNHVMPVPGAPLDPA 61 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + D + GT L + + +V+ FDP+ FL AR++YE IV +F Sbjct: 62 VATAGAEPGVPSDRWRGVAEPGTPLARGLDAVVANDPSFDPRHFLTGARSAYEMIVLAFA 121 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 G A+ L+ S VY F+ + R+ +E+ ++ V ID ++++A + + T +T+R Sbjct: 122 NGDRRALRDLLSSEVYDSFDAVIKDREKHEQKTETRFVSIDTAELVSADLRDRTAQLTVR 181 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 V Q IS + DK ++ +P+ + DIWTF R+ +PNW L+ T Sbjct: 182 FVSQMISVTRDKMGNIVDGNPDKVADITDIWTFARDTGSRDPNWKLVGTGS 232 >gi|153008182|ref|YP_001369397.1| import inner membrane translocase subunit Tim44 [Ochrobactrum anthropi ATCC 49188] gi|151560070|gb|ABS13568.1| import inner membrane translocase subunit Tim44 [Ochrobactrum anthropi ATCC 49188] Length = 231 Score = 279 bits (713), Expect = 3e-73, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 125/219 (57%), Gaps = 4/219 (1%) Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73 +FLQLR VLG++TG+EKP + S + + +++L + + + + Sbjct: 13 IAAVIIFLQLRNVLGRRTGSEKPPFDPYTSARSADAAPASGETDNVVSLPRRPGEKDFTA 72 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 I++ P+GT +N MR I + FDP F+ + +YE IV SF +G ++ L+ Sbjct: 73 IDKAAPVGTPVNDGMRAIYAADPSFDPAGFVEGVKIAYEMIVMSFADGDRKVLKNLLSKD 132 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 V++ F ++ R++ ++V+SS VGID +I A ++ + ++T+ IV Q IS+++DKD Sbjct: 133 VFEGFVSAIDDRETRGESVRSSFVGIDKAEIAGAEMKGSEAHVTVNIVSQMISSTFDKDG 192 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 LI DPE ++ D+WTF R+ +PNW L++T+ + Sbjct: 193 KLIDGDPENVLEIKDLWTFARDTRSRDPNWKLVATEAED 231 >gi|17988336|ref|NP_540970.1| transporter [Brucella melitensis bv. 1 str. 16M] gi|17984111|gb|AAL53234.1| transporter [Brucella melitensis bv. 1 str. 16M] Length = 216 Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats. Identities = 68/215 (31%), Positives = 123/215 (57%), Gaps = 4/215 (1%) Query: 22 FVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSINEL 77 +FLQLR VLG++TGNEKP + S + +++L + + + +I+++ Sbjct: 2 IIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGGPDNVVSLPRRANEKDYTAIDKI 61 Query: 78 FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD 137 P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY+ Sbjct: 62 APAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVYEG 121 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197 F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D +I Sbjct: 122 FVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKVID 181 Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 DP+ ++ D+WTF R+ +PNW L++T+ + Sbjct: 182 GDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 216 >gi|146337371|ref|YP_001202419.1| hypothetical protein BRADO0204 [Bradyrhizobium sp. ORS278] gi|146190177|emb|CAL74169.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278] Length = 233 Score = 278 bits (712), Expect = 4e-73, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 111/231 (48%), Gaps = 10/231 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK- 68 D ++F + F+FL+LR VLG++TG+E+ + V + + + Sbjct: 2 DIYTIIFLGLAVFIFLRLRSVLGQRTGSERTPFDRTARNAVGAPDNHVMPVPGAPLDPAG 61 Query: 69 ---------DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 D + GT L + + I + FDP+ FL AR++YE IV +F Sbjct: 62 PSTGAADFGAPSDRWRGIAEPGTPLARGLDAIAANDASFDPRHFLTGARSAYEMIVLAFA 121 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 G A+ L+ S VY F+ + R+ NE+ ++ V ID +++NA + T +T+R Sbjct: 122 NGDRRALRDLLSSEVYDSFDAVIKDREKNEQKTETRFVSIDTAELVNAEARDRTAQLTVR 181 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 V Q IS + DK ++ +P+ + DIWTF R+ +PNW L+ T Sbjct: 182 FVSQMISVTRDKTGNIVDGNPDKVADITDIWTFARDTGSRDPNWKLVGTGS 232 >gi|254780815|ref|YP_003065228.1| hypothetical protein CLIBASIA_03530 [Candidatus Liberibacter asiaticus str. psy62] gi|254040492|gb|ACT57288.1| hypothetical protein CLIBASIA_03530 [Candidatus Liberibacter asiaticus str. psy62] Length = 232 Score = 277 bits (709), Expect = 8e-73, Method: Composition-based stats. Identities = 232/232 (100%), Positives = 232/232 (100%) Query: 1 MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60 MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII Sbjct: 1 MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE Sbjct: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI Sbjct: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE Sbjct: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 >gi|254500164|ref|ZP_05112315.1| Tim44-like domain family [Labrenzia alexandrii DFL-11] gi|222436235|gb|EEE42914.1| Tim44-like domain family [Labrenzia alexandrii DFL-11] Length = 245 Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 126/230 (54%), Gaps = 17/230 (7%) Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRD--ERGIITLGKGKKK--------- 68 F+ +LR VLGK+TG E+P +S + + + +I L ++ Sbjct: 16 AVFILFRLRSVLGKRTGEERPPFDPYSKPEQQNGQANGQDNVIPLPHQGQQSPEGYDDMA 75 Query: 69 ------DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 D I+++ P G+ LN ++ I+SV F+P+ F+ A+ +YE IV +F +G Sbjct: 76 PARQEEDGEVVIDKVAPAGSALNNALKQILSVDRSFEPEPFIQGAKAAYEMIVMAFADGD 135 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 A++ L+ V++ F+ ++ R+ + ++S+ VGID +I+ A++++ T +T+RI Sbjct: 136 KKALKNLLSRDVFEGFSAAIDDREKRGETIESTFVGIDKAEIVEAALKDTTAQVTVRIHS 195 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 Q ISA+ DK ++ DP +VIDIWTF R+ +PNW L++T+ E Sbjct: 196 QLISATRDKGGEVVDGDPAKVTEVIDIWTFARDTATRDPNWKLVATESAE 245 >gi|298293768|ref|YP_003695707.1| import inner membrane translocase subunit Tim44 [Starkeya novella DSM 506] gi|296930279|gb|ADH91088.1| import inner membrane translocase subunit Tim44 [Starkeya novella DSM 506] Length = 241 Score = 275 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 121/239 (50%), Gaps = 16/239 (6%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF--SKRDERGIITLGKGK 66 D ++F + F+F++LR VLG++TG E+P +S + +++ Sbjct: 2 FDIYTIIFLALAVFIFIRLRSVLGQRTGRERPPYDPYSRRDPAKAPAGPADKVVSFPGAA 61 Query: 67 KKDNLDSINE--------------LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 +K ++ E + +G+ + + I + FD + FL AR +YE Sbjct: 62 EKPSVPEPAEATESDEPAPARWAGVAEVGSAVANGLDAIAAQERGFDAQHFLTGARAAYE 121 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 IV +F G A+++L+ V++ F+ +++ R+ + +++ VGI+ ++II A ++ Sbjct: 122 MIVVAFANGDRAALKELLAREVFEGFSAAIAEREQRGEKMETQFVGIEKVEIIEAGVKGR 181 Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + +T+R + Q IS + DK +I DPE V D+WTF R + +PNW L++T+ Sbjct: 182 SAQMTLRFLSQLISVTRDKAGRVIDGDPEQVADVTDVWTFARELGTRDPNWKLVATEAA 240 >gi|154245991|ref|YP_001416949.1| import inner membrane translocase subunit Tim44 [Xanthobacter autotrophicus Py2] gi|154160076|gb|ABS67292.1| import inner membrane translocase subunit Tim44 [Xanthobacter autotrophicus Py2] Length = 250 Score = 274 bits (701), Expect = 7e-72, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 115/234 (49%), Gaps = 11/234 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRD-ERGIITLGKGKKK 68 D ++F + F+F++LR VLG++TG E+P +S + ++ L + Sbjct: 17 DIYTIIFLALAVFIFVRLRSVLGQRTGRERPPYDPYSRDTARPPQPASDKVVPLPERPVS 76 Query: 69 DNLDSINELFPI----------GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 S + P G+ + +I + DFD + FL AR +YE IV +F Sbjct: 77 PPAASPVDEAPPAYRWEGVAQEGSATAAALDEIARIEPDFDARHFLTGARAAYEMIVTAF 136 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 G A++ L+ VY F +++ R+S + ++S V ++ ++ + ++ + + +T+ Sbjct: 137 AAGDRRALKDLLAKDVYDGFVSAIADRESRRETMESRFVAVEQAELQDVTVRDRSAQLTV 196 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 R V + IS + D ++ P+ V D+WTF R++ +PNW L++T+ + Sbjct: 197 RFVSKLISVTRGPDGAVVDGSPDTVADVTDVWTFARDLGTRDPNWKLVATEAAQ 250 >gi|49473777|ref|YP_031819.1| hypothetical protein BQ00970 [Bartonella quintana str. Toulouse] gi|49239280|emb|CAF25603.1| hypothetical protein BQ00970 [Bartonella quintana str. Toulouse] Length = 230 Score = 274 bits (700), Expect = 9e-72, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 127/225 (56%), Gaps = 4/225 (1%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGK----YVFSKRDERGIITLGK 64 + +++L I VF+QLR VLGK+ G EKP +SG+ D Sbjct: 3 FNIVLVLALVIMVVVFVQLRNVLGKRIGFEKPPFDPYSGRSKKQTETETADNIVSFPHQG 62 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 +K++ I+ + P G+ LN+ +R + F P+ F+ A+ +YE IV +F +G Sbjct: 63 NSQKNDFSEIDAISPKGSALNEGLRALRQSDPHFSPQFFIKGAQVAYEMIVTAFAKGDRD 122 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 ++KL+ V++ F ++ R+ N + V+ + VGI+ ++ + A++++N ++T+RIV + Sbjct: 123 QLKKLLSQNVFESFCAAIEQREKNNERVQFTFVGINKIEFVAAAMQDNEEFLTVRIVSEM 182 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 ISA+Y++ LI DP+ ++ D+WTFV N S+PNW L +T+ Sbjct: 183 ISATYNEQEELIDGDPDAIVEIRDVWTFVHNSLSSDPNWKLFATE 227 >gi|49474924|ref|YP_032965.1| hypothetical protein BH01040 [Bartonella henselae str. Houston-1] gi|49237729|emb|CAF26919.1| hypothetical protein BH01040 [Bartonella henselae str. Houston-1] Length = 230 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 129/228 (56%), Gaps = 4/228 (1%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKY----VFSKRDERGIITLGK 64 D +++L I VF+QLR VLGK+ G EKP +S + D ++ Sbjct: 3 FDIVLVLALVIMVVVFMQLRNVLGKRIGFEKPPFDPYSSRSKKQIETETADNNASLSHQV 62 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 +K++ I+ + P G+ LNK +R + F P+ F+ A+ +YE IV +F +G + Sbjct: 63 NSQKNDFSEIDAIAPEGSELNKGLRALHQNDPHFSPQFFIKGAQVAYEMIVTAFAKGDRN 122 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 + +L+ V++ F+ ++ R+ N + V+ + VGI+ ++ + A+++E ++TIRIV + Sbjct: 123 QLRRLLSQDVFESFDAAIEQREKNNERVQFTFVGINKIEFVAAAMQEKEEFLTIRIVSEM 182 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ISA+Y++ I DP+ ++ DIWTFVRN ++PNW L +T+ + Sbjct: 183 ISATYNEQGERIDGDPDTIVEIRDIWTFVRNSLSTDPNWKLFATEDED 230 >gi|254486605|ref|ZP_05099810.1| transporter, Tim44 family [Roseobacter sp. GAI101] gi|214043474|gb|EEB84112.1| transporter, Tim44 family [Roseobacter sp. GAI101] Length = 219 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 10/226 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EK K + G Sbjct: 1 MNSPMIQLLVLAGIAVFLILRLKNVLGTREGFEKKP----EIDAKPQKPSGPAFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D P G+ + ++ V F DFL AR +YE IV F G + Sbjct: 57 PDLDITDH----APEGSDTALALAEMKRVEPSFGVSDFLGGARGAYEMIVMGFEHGNLDD 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 I+ + ++ F D ++ R+ V+S+ +GI +M++ NA++++ T +TIR V + Sbjct: 113 IKPFLSEDIFDSFVDGIAAREDQGLTVESTFIGIREMELENATMDKATKEAELTIRFVAE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 S DKD ++I P + D W F R + +PNW+L+ST Sbjct: 173 MTSVVKDKDGMVIEGSPTEVKRQKDTWVFARVMGSDDPNWLLVSTD 218 >gi|83942018|ref|ZP_00954480.1| transporter, Tim44 family protein [Sulfitobacter sp. EE-36] gi|83953067|ref|ZP_00961789.1| transporter, Tim44 family protein [Sulfitobacter sp. NAS-14.1] gi|83842035|gb|EAP81203.1| transporter, Tim44 family protein [Sulfitobacter sp. NAS-14.1] gi|83847838|gb|EAP85713.1| transporter, Tim44 family protein [Sulfitobacter sp. EE-36] Length = 219 Score = 272 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 62/226 (27%), Positives = 105/226 (46%), Gaps = 10/226 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG +TG EKP + + G Sbjct: 1 MNSPMIQLLVLAAIAVFLILRLKNVLGTRTGFEKP----AEVSEKPERPSGPAFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D P G+ + ++ V F DFL AR +YE IV + G + Sbjct: 57 PDLDITDH----APEGSDTALALAEMKRVEPSFGVSDFLGGARGAYEMIVMGYEHGNLDE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183 I+ + +Y+ F + ++ R+ V+S +GI +M++ NA++++ N +TIR V + Sbjct: 113 IKPFLSEDIYESFVEGVAAREDQGLTVESHFIGIREMELENATMDKTTNEAELTIRFVAE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 S D+D ++ + D W F R + +PNW+L+ST Sbjct: 173 LTSVVKDRDGEIVEGSTTEVNRQKDTWVFARVMGSDDPNWLLVSTD 218 >gi|260431955|ref|ZP_05785926.1| transporter, Tim44 family [Silicibacter lacuscaerulensis ITI-1157] gi|260415783|gb|EEX09042.1| transporter, Tim44 family [Silicibacter lacuscaerulensis ITI-1157] Length = 219 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 59/227 (25%), Positives = 113/227 (49%), Gaps = 10/227 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EKP + + + R + G Sbjct: 1 MNSPLIQLLVLAGIAIFLILRLKSVLGTREGFEKPPVP----QQPAASKSRRDFEVIDGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D D + P + + + + + V F +FL AR++YE IV F G + Sbjct: 57 PDRDITDHV----PEDSEIAQTLAAMKRVEPSFSVSEFLQGARSAYEMIVMGFERGNLDE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 I+ + V++ F ++ R+ ++++ +G+ +M +++A +++T IT+R VG+ Sbjct: 113 IQPFLSEEVFETFVSVVAEREDKGLSIEAEFIGVREMALVDAQFDKDTNRAEITVRFVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S D+D ++ +P + D WTF R + +PNW+L++T Sbjct: 173 LTSVVRDRDGNIVEGNPNTIKRQKDSWTFARVMGADDPNWLLVATDA 219 >gi|170739669|ref|YP_001768324.1| import inner membrane translocase subunit Tim44 [Methylobacterium sp. 4-46] gi|168193943|gb|ACA15890.1| import inner membrane translocase subunit Tim44 [Methylobacterium sp. 4-46] Length = 238 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 112/236 (47%), Gaps = 9/236 (3%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFF--SGKYVFSKRDERGIITLG 63 DS D L+F + FV +LR VLG+KTG+E+P + E ++ L Sbjct: 3 QDSLDLTTLIFLGLAVFVIWKLRAVLGQKTGHERPPFNPLVRRREEPPPAAREDNVVRLP 62 Query: 64 KGKKKDNLDSIN-------ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116 G + + + + + + ++ FDP+ F + A+ +YE IV Sbjct: 63 AGGDRTAAAPVATVPRNWKGVVEPNSAAARGLDLVLQQEPGFDPRAFTDGAKIAYETIVM 122 Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F +G ++ L+ V + F ++ R+ ++V+++ V ID +I+ + I Sbjct: 123 AFAKGDRRTLKSLLSREVAEGFERAIQARERAGQSVETTFVSIDRAEIVGVDLRNRVAQI 182 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 T+R + + I+A+ + ++ P+ V D+WTF R + +PNW L++T+ G+ Sbjct: 183 TVRYLSKLITATRNAQGAVVDGSPDTVVDVTDVWTFARTLGSRDPNWQLVATEAGQ 238 >gi|240849776|ref|YP_002971164.1| putative translocase transmembrane protein [Bartonella grahamii as4aup] gi|240266899|gb|ACS50487.1| putative translocase transmembrane protein [Bartonella grahamii as4aup] Length = 230 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 128/225 (56%), Gaps = 4/225 (1%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKY----VFSKRDERGIITLGK 64 D ++++ + +F+QLR VLGK+ G EKP +S + D K Sbjct: 3 FDVILVIALVVMVVIFVQLRNVLGKRIGFEKPPFDPYSRRSKKQVEAETADNIVSFPHQK 62 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 +KD+ I+++ P G+ LNK +R++ + F P+ F+ A+ +YE IV +F +G + Sbjct: 63 NSQKDDFSEIDKISPEGSILNKNLRELHKIDPQFSPQFFIKGAQIAYEMIVTAFAKGDRN 122 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 ++ L+ V++ F ++ R+ N++ ++ + VGI+ ++ + A+I+E +TIRIV + Sbjct: 123 QLKSLLCQDVFESFCTAIEQREKNKERIEFTFVGINKIEFVAAAIQEKDELLTIRIVSEM 182 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 IS +Y++ I DP+ ++ DIWTFVRN S+PNW L +T+ Sbjct: 183 ISVTYNEQGERIDGDPDAIVEIRDIWTFVRNSLSSDPNWKLFATE 227 >gi|159184122|ref|NP_353048.2| hypothetical protein Atu0008 [Agrobacterium tumefaciens str. C58] gi|159139459|gb|AAK85833.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 217 Score = 269 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 84/215 (39%), Positives = 127/215 (59%), Gaps = 5/215 (2%) Query: 23 VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKR--DERGIITLG---KGKKKDNLDSINEL 77 +F QLR VLG++TGNEKP +S + V D+ ++TL + ++ + + L Sbjct: 3 IFFQLRSVLGRRTGNEKPPFDPYSPRDVAKGPVADDNKVVTLPKRGEAEEDNRFAEADAL 62 Query: 78 FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD 137 P T LN +RD+++ F PK+FLN AR +YE IV F +G ++ L+ V+ Sbjct: 63 APADTPLNASLRDVMTKDPSFRPKEFLNGARMAYEMIVMGFADGDRKTLKNLLSKEVFDG 122 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197 F ++S R+S + VKS+ VGI+ I A + ++ V +T+RIV Q ISA+YDKD L+ Sbjct: 123 FEAAISERESRGEVVKSTFVGIEKADITQAGVRDSEVQVTLRIVSQLISATYDKDGKLVD 182 Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 DPE +V DIWTF R+I +PNW LI+T+ + Sbjct: 183 GDPEAVAEVDDIWTFSRDIRSRDPNWKLIATESEQ 217 >gi|220921009|ref|YP_002496310.1| import inner membrane translocase subunit Tim44 [Methylobacterium nodulans ORS 2060] gi|219945615|gb|ACL56007.1| import inner membrane translocase subunit Tim44 [Methylobacterium nodulans ORS 2060] Length = 241 Score = 267 bits (684), Expect = 7e-70, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 108/240 (45%), Gaps = 13/240 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGK----YVFSKRDERGIIT 61 DS D L+F + FV +LR VLG+KTGNE+P + + ++ Sbjct: 2 QDSLDLTTLIFLGLAVFVIWKLRSVLGQKTGNERPPFNPLLRRREEPPPAPREGGDNVVR 61 Query: 62 LGKGKKKDNL---------DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 L + + + + + ++ FDP+ F + A+ +YE Sbjct: 62 LPGAGADRGAAAPVAATVPRNWKGVVEPNSPAARGLDLVLQQEPSFDPRAFTDGAKVAYE 121 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 IV +F +G ++ L+ V F ++ R+ + V+++ V ID +I+ + Sbjct: 122 TIVMAFAKGDRKTLKSLLSREVADGFERAIQARERAGQTVETTFVSIDRAEIVGVDVRNR 181 Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 IT+R + + I+A+ + ++ P+ V D+WTF R + +PNW L++T+ G+ Sbjct: 182 VAQITVRFLSKLITATRNPQGAVVDGSPDTVVDVTDVWTFARTLGSRDPNWQLVATEAGQ 241 >gi|254450565|ref|ZP_05064002.1| transporter, Tim44 family [Octadecabacter antarcticus 238] gi|198264971|gb|EDY89241.1| transporter, Tim44 family [Octadecabacter antarcticus 238] Length = 224 Score = 267 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 10/230 (4%) Query: 1 MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60 M M+S +L+ A I F+ L+LR VLG + G EKP + + ++R + Sbjct: 1 MKETHMNSPVLQLLVLAGIAIFLILRLRNVLGTREGFEKPKAPPA----IPTRRFGPDLE 56 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 + G D D ++ + + K + + + F+ ++FL AR +YE I+ F + Sbjct: 57 VIEGGPDPDVTDYVD----ADSDMAKALTAMKTADRSFNVREFLRGARGAYEMILTGFEK 112 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITI 178 G + I+ + S VY F + +R+ + ++ +GI + +++A +E T ITI Sbjct: 113 GDLAEIKPFLSSDVYDAFAGVVESREKDGLSIDFKFIGISETTLVDAEFDETTKNAEITI 172 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + + + SA YD L P K D+WTF R + +PNW L++T Sbjct: 173 KFLNESTSAVYDNGGDLKEGSPTEIKKQRDVWTFGRTMGTGDPNWFLVAT 222 >gi|84501205|ref|ZP_00999410.1| transporter, Tim44 family protein [Oceanicola batsensis HTCC2597] gi|84390496|gb|EAQ02984.1| transporter, Tim44 family protein [Oceanicola batsensis HTCC2597] Length = 220 Score = 267 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 9/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+LR VLG + G EK + + + G Sbjct: 1 MNSPIIQLLVLAGIAVFLILRLRSVLGTREGFEKTP---VTRSGPSNSEARGNFEVIEGG 57 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D +D + P + + + + F +FL AR +YE I+ F G++ Sbjct: 58 PDPDIVDHV----PEDSPAAGALARMKQLEPSFSVGEFLGGARGAYEMILMGFERGEMAE 113 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183 I+ + VY+ F ++ R + +++ VG+ ++++++A +++ +T+R VGQ Sbjct: 114 IKPFLSEEVYESFAHVVNERDAKGLTIEADFVGVKELQLVDAELDDTSREGELTVRFVGQ 173 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 A D+ +I DP+ D+WTF R + +PNW L++T Sbjct: 174 LTFAVRDRAGEVIEGDPKSIKTQRDVWTFARKMGSDDPNWQLVAT 218 >gi|114762187|ref|ZP_01441655.1| transporter, Tim44 family protein [Pelagibaca bermudensis HTCC2601] gi|114545211|gb|EAU48214.1| transporter, Tim44 family protein [Roseovarius sp. HTCC2601] Length = 219 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 108/227 (47%), Gaps = 10/227 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M++ +L+ A I F+ L+LR VLG + G EKP S S + + R + G Sbjct: 1 MNTPIVQLLVLAGIAIFLILRLRSVLGTRDGFEKPESPSPSRRDDTA----RDFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D +D + E P + + + F +FL+ AR +YE I+ F G++ Sbjct: 57 PDHDIIDHVPENSPA----AEALAKMKRAEPSFGVGEFLSGARGAYEMILMGFDNGEIED 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 ++ + +Y+ F+D + R +++ VG+ ++ +++A+ ++ IT++ VG+ Sbjct: 113 LKPFLSDEIYETFSDVIEQRAQQGLTIEAQFVGVRELSLVDATFDDTERLAEITVKYVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S + +I P + D+WT+ R + +PNW L++T Sbjct: 173 LTSVVKNAAGEVIEGSPTAVKRQKDVWTYARRMGSDDPNWQLVATDE 219 >gi|260429391|ref|ZP_05783368.1| transporter, Tim44 family [Citreicella sp. SE45] gi|260420014|gb|EEX13267.1| transporter, Tim44 family [Citreicella sp. SE45] Length = 219 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 57/227 (25%), Positives = 111/227 (48%), Gaps = 10/227 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M++ +L+ A I F+ L+LR VLG + G EKP + + + +R + G Sbjct: 1 MNTPIVQLLVLAGIAIFLILRLRSVLGTRDGFEKPEAPAPAKRDD----RKRDFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D + E P + + + + F+ +FL+ AR +YE I+ F G++ Sbjct: 57 PDHDITDHVPENSPA----AEALAKMKRIEPSFNVTEFLSGARGAYEMILMGFDNGEIED 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 ++ + +Y+ F+D + R V++ VG+ ++ +++AS +E IT++ VG+ Sbjct: 113 LKPFLSDEIYETFSDVIEQRGQQGLTVEAEFVGVRELSLVDASFDETRQLAEITVKYVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S + ++ +P + D+WT+ RN+ +PNW L++T Sbjct: 173 LTSVVKNAAGEIVEGNPRTVKRQKDVWTYARNMGTDDPNWQLVATDE 219 >gi|126463660|ref|YP_001044774.1| import inner membrane translocase, subunit Tim44 [Rhodobacter sphaeroides ATCC 17029] gi|332559713|ref|ZP_08414035.1| import inner membrane translocase, subunit Tim44 [Rhodobacter sphaeroides WS8N] gi|126105324|gb|ABN78002.1| import inner membrane translocase, subunit Tim44 [Rhodobacter sphaeroides ATCC 17029] gi|332277425|gb|EGJ22740.1| import inner membrane translocase, subunit Tim44 [Rhodobacter sphaeroides WS8N] Length = 219 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 110/225 (48%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M S +L+ A I F+ ++L+ VLG + G EKP R R + G Sbjct: 1 MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPAVPL----EDPKPRTRRDFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D +D + + G+ K + + F +FL AR +YE IV +F +G++ Sbjct: 57 PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLTGARGAYEMIVMAFEKGELEQ 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 I + V++ F +++ R++ +V+++ +G+ ++ I AS + +T + +R VG+ Sbjct: 113 IRPFLSPDVFESFEEAVKAREAEGLSVEATFLGLREIDIHEASFDRDTRVGQVAVRFVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S D+ +I P + D+WTF R + ++PNW L++T Sbjct: 173 LTSVVRDRTGQVIEGSPTEVKRQRDVWTFERRMGANDPNWQLVAT 217 >gi|163745120|ref|ZP_02152480.1| hypothetical protein OIHEL45_06015 [Oceanibulbus indolifex HEL-45] gi|161381938|gb|EDQ06347.1| hypothetical protein OIHEL45_06015 [Oceanibulbus indolifex HEL-45] Length = 219 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 10/226 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EKP S R + G Sbjct: 1 MNSPLIQLLVLAGIAVFLILRLKNVLGTREGFEKPPV----SDQTPSARSGPSFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D + P + K + ++ V F DFL AR +YE IV + G + Sbjct: 57 PDLDITDHV----PEDSTSGKALAEMKRVEPSFGVNDFLQGARGAYEMIVMGYERGDLAE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 I+ + VY+ F D ++ R+ ++++ +G+ ++++I+A ++E T +TIR VG+ Sbjct: 113 IQPFLAEDVYESFVDGVAAREDQGLTIEANFIGVRELELIDARMDEATKEAELTIRFVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 SA +++ ++ + D W F R + +PNW+L+ST Sbjct: 173 LTSAVRNREGEIVEGSINEIKRQKDTWVFARVMGSDDPNWLLVSTD 218 >gi|163867402|ref|YP_001608597.1| hypothetical protein Btr_0112 [Bartonella tribocorum CIP 105476] gi|161017044|emb|CAK00602.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 230 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 126/225 (56%), Gaps = 4/225 (1%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKY--VFSKRDERGIITLGKGK 66 D ++++ + +F+QLR VLGK+ G EKP +S + I++ K Sbjct: 3 FDVILVIALVVMVVIFVQLRSVLGKRIGFEKPPFDPYSRRSKKQTEAETTENIVSFPHQK 62 Query: 67 --KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 +K + I+E+ P G+ LN+ +R + + F P+ F+ A+ +YE IV +F +G Sbjct: 63 NLQKGDFSEIDEIAPEGSILNENLRALRRIDPHFSPQSFIKGAQIAYEMIVTAFAKGDRS 122 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 ++ L+ V++ F + R+ N++ ++ + VGI+ ++ ++A+I+E +TIRI+ + Sbjct: 123 QLKSLLCQDVFESFCAVIEQREKNKERIEFTFVGINKIEFVSAAIQEKDELLTIRIISEM 182 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 IS +Y++ I +P+ ++ DIWTFVRN +PNW L +T+ Sbjct: 183 ISVTYNEQGERIDGNPDAIVEIRDIWTFVRNSLSPDPNWKLFATE 227 >gi|56698697|ref|YP_169074.1| Tim44 family protein [Ruegeria pomeroyi DSS-3] gi|56680434|gb|AAV97100.1| transporter, Tim44 family [Ruegeria pomeroyi DSS-3] Length = 218 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 11/227 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EKP R R + G Sbjct: 1 MNSPLIQLLVLAGIAIFLILRLKSVLGTREGFEKPPVPQ-----QPENRTRRDFEVIEGG 55 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D D + P + + + + + F +F+ AR +YE IV F G + Sbjct: 56 PDRDITDHV----PEDSPQAQALAAMKRIEPAFSVSEFVQGARGAYEMIVMGFERGNLDE 111 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183 IE + V++ F ++ R+ +++ +G+ + I + ++ N IT+R VG+ Sbjct: 112 IEPFLTEEVFETFVGVVAAREDQGLTIEAEFIGVRETSIQDVHFDKDSNRGEITMRFVGE 171 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S D+ +I P + D+WTF R + +PNW+L++T Sbjct: 172 LTSVVRDRGGDVIEGSPTAVKRQKDVWTFARVMGTDDPNWLLVATDA 218 >gi|146278709|ref|YP_001168868.1| import inner membrane translocase, subunit Tim44 [Rhodobacter sphaeroides ATCC 17025] gi|145556950|gb|ABP71563.1| import inner membrane translocase, subunit Tim44 [Rhodobacter sphaeroides ATCC 17025] Length = 219 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 113/225 (50%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M S +L+ A I F+ ++L+ VLG + G EKP + R R + G Sbjct: 1 MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPPVPLEDPR----PRPRREFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D +D + + G+ K + + F +FL AR +YE IV +F +G++ Sbjct: 57 PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLTGARGAYEMIVMAFEKGELEQ 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI--EENTVYITIRIVGQ 183 I + + V++ F D+++ R++ +V+++ +G+ ++ I AS + I +R VG+ Sbjct: 113 IRPFLSAEVFESFEDAVNAREAEGLSVEANFLGLREIDIHEASFERDSRIGQIAVRFVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S +++ ++ P + D+WTF R++ ++PNW L++T Sbjct: 173 LTSVVRNREGQVVEGSPTEIKRQRDVWTFERHMGANDPNWQLVAT 217 >gi|126738514|ref|ZP_01754219.1| transporter, Tim44 family protein [Roseobacter sp. SK209-2-6] gi|126720313|gb|EBA17019.1| transporter, Tim44 family protein [Roseobacter sp. SK209-2-6] Length = 241 Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 107/230 (46%), Gaps = 11/230 (4%) Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61 + M+S +L+ A I F+ L+L+ VLG + G EKP + + Sbjct: 20 REVLMESPLIQLLVLAGIAVFLILRLKSVLGTREGFEKPPVSAAEKRQGRP-----DLEV 74 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 + G +D D + E P + + F +F+ AR +YE I+ F G Sbjct: 75 IEGGPDRDITDHVEEESPA----AQAFASMKRAEPSFSVSEFVQGARGAYEMILMGFENG 130 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIR 179 ++ A++ + VY F ++++ R+ +++ +G+ + ++ A ++ NT +T+R Sbjct: 131 ELDALKGFLAEDVYDSFVEAVADREDKGLTIEAEFIGVRETAVVGAHFDDANNTAEVTMR 190 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 VG+ S D+D ++ D + + D W F R++ +PNW L++T Sbjct: 191 FVGELTSVVRDRDGEIVEGDAKAVKRQKDTWVFARSMGTDDPNWQLVATD 240 >gi|255263169|ref|ZP_05342511.1| transporter, Tim44 family [Thalassiobium sp. R2A62] gi|255105504|gb|EET48178.1| transporter, Tim44 family [Thalassiobium sp. R2A62] Length = 219 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+LR VLG + G EKP + + R + G Sbjct: 1 MNSPIIQLLVLAGIAIFLILRLRNVLGTREGFEKPP----AQQSSAPDRALSDFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D + P G + + V F+ +FL AR +YE I+ +F G++ Sbjct: 57 PDHDITDHV----PEGGDAYNALLGMKKVDPSFNVGEFLGGARGAYEMILMAFERGEIEE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 I+ + S VY+ F + RK+ ++++ VGI DM + A E T I +R VG+ Sbjct: 113 IKPFLSSDVYEAFATVVDDRKAKGVTIEANFVGISDMALNAADFNETTGEAEIAVRFVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S DK +I + D WTF R++ +PNW L++T Sbjct: 173 MTSIVRDKGGDVIEGSETTVKRQKDTWTFARDMDADDPNWDLVAT 217 >gi|221640736|ref|YP_002526998.1| Import inner membrane translocase subunit Tim44 [Rhodobacter sphaeroides KD131] gi|221161517|gb|ACM02497.1| Import inner membrane translocase, subunit Tim44 precursor [Rhodobacter sphaeroides KD131] Length = 219 Score = 265 bits (677), Expect = 5e-69, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 110/225 (48%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M S +L+ A I F+ ++L+ VLG + G EKP R R + G Sbjct: 1 MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPAVPL----EDPKPRTRRDFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D +D + + G+ K + + F +FL AR +YE IV +F +G++ Sbjct: 57 PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLIGARGAYEMIVMAFEKGELEQ 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 I + V++ F +++ R++ +V+++ +G+ ++ I AS + +T + +R VG+ Sbjct: 113 IRPFLSPDVFESFEEAVKAREAEGLSVEATFLGLREIDIHEASFDRDTRVGQVAVRFVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S D+ +I P + D+WTF R + ++PNW L++T Sbjct: 173 LTSVVRDRTGQVIEGSPTEVKRQRDVWTFERRMGANDPNWQLVAT 217 >gi|77464817|ref|YP_354321.1| hypothetical protein RSP_1239 [Rhodobacter sphaeroides 2.4.1] gi|77389235|gb|ABA80420.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1] Length = 219 Score = 265 bits (677), Expect = 5e-69, Method: Composition-based stats. Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M S +L+ A I F+ ++L+ VLG + G EKP R R + G Sbjct: 1 MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPAVPL----EDPKPRTRRDFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D +D + + G+ K + + F +FL AR +YE IV +F +G++ Sbjct: 57 PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLTGARGAYEMIVMAFEKGELEQ 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 I + S V++ F +++ R++ +V+++ +G+ ++ I AS + +T + +R VG+ Sbjct: 113 IRPFLSSDVFESFEEAVKAREAEGLSVEATFLGLREIDIHEASFDRDTRVGQVAVRFVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S D+ +I P + D+WTF R + ++PNW L++T Sbjct: 173 LTSVVRDRTGQVIEGSPTEVKRQRDVWTFERRMGANDPNWQLVAT 217 >gi|83313642|ref|YP_423906.1| hypothetical protein amb4543 [Magnetospirillum magneticum AMB-1] gi|82948483|dbj|BAE53347.1| Uncharacterized protein [Magnetospirillum magneticum AMB-1] Length = 281 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 61/220 (27%), Positives = 113/220 (51%), Gaps = 11/220 (5%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 I+ FA + F+ L+LR VLGK+TG E+P ++ + ++ L ++ + Sbjct: 72 IVFFAMVAAFLVLRLRSVLGKRTGAERPPE-----QWTPPEAAADNVVDLQSVRRSASEP 126 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 P T + + + I + FD FL A+ ++E IV +F G ++ L+ Sbjct: 127 ------PAETPMGQGLAAIRAADRGFDLDGFLGGAKAAFEMIVIAFAHGDKATLQPLLAP 180 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 VY+ F+D++ R+ + + +++ LVGI +++ A ++ +TIR V + ++A D Sbjct: 181 DVYRHFSDAIDARRQHGETLQTELVGIRTAELVEAGMDGRFAALTIRFVSEQVNALRDAK 240 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ++ +PE VID+WTF R+ ++PNW L +T E Sbjct: 241 GEVVEGNPERVIDVIDLWTFRRDTRSADPNWALAATHTPE 280 >gi|254472289|ref|ZP_05085689.1| import inner membrane translocase, subunit Tim44 [Pseudovibrio sp. JE062] gi|211958572|gb|EEA93772.1| import inner membrane translocase, subunit Tim44 [Pseudovibrio sp. JE062] Length = 248 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 123/244 (50%), Gaps = 21/244 (8%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKY------VFSKRDERGIITL 62 D ++F +FL+LR VLG +TGNE+ +S + + +E +I L Sbjct: 5 FDVYNIIFLIAAVVIFLRLRSVLGNRTGNERQPFDPYSAQQKQDSQKTQAPENEDNVIPL 64 Query: 63 GKGK-------------KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN 109 + ++ I+++ GT LN +R+I F+PK+F+ AR Sbjct: 65 PGSEHVHHDPERAEREAREQIEAEIDKVAKKGTDLNHGLREIWKAEPSFNPKEFVEGARG 124 Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 +YE I+ SF +G ++ L+ V+ F+ ++ R+S + V+S+ VGID I+ A Sbjct: 125 AYEIILMSFAQGDRRTLKDLLSPEVFTGFSAAIDDRESRNERVESTFVGIDKADIVEAVF 184 Query: 170 --EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 +++ +T+R Q I+A+ D +N ++ DP ++ DIWTF R ++PNW L++ Sbjct: 185 NQKDSLAEVTVRFKSQLITATRDSENRIVDGDPTAVSELTDIWTFARVTGVNDPNWKLVA 244 Query: 228 TKLG 231 T+ Sbjct: 245 TESA 248 >gi|126724535|ref|ZP_01740378.1| import inner membrane translocase, subunit Tim44 [Rhodobacterales bacterium HTCC2150] gi|126705699|gb|EBA04789.1| import inner membrane translocase, subunit Tim44 [Rhodobacterales bacterium HTCC2150] Length = 236 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 117/229 (51%), Gaps = 10/229 (4%) Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61 F KM S +L+ A I F+ L+L+ VLG + G EKP + G+ S R + ++ Sbjct: 14 RFTKMGSSMIQLLVLAGIAVFLILRLKNVLGTREGFEKPRAP--QGQAQQSNRPQLEVVE 71 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 G + I E I + + +I + +F ++FL A+ +YE I+ +F G Sbjct: 72 NGPDQD------IAEYVEIDSEAGMALAEIKAQDRNFTVQEFLGGAKGAYEMILIAFEGG 125 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIR 179 K+ +E + V + F + ++ R+ V ++ +G+ +M + +A+++ N +T++ Sbjct: 126 KLSDVEPFLSEEVMESFVEVVADREDQGLTVTANFIGLREMAVHDATLDPITNIAEVTVK 185 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 VG+ S ++ + ++ D + + DIWTF R++ NPNW L++T Sbjct: 186 FVGEMTSVVHNAEGEVVEGDEKTIKRQKDIWTFARDLGDDNPNWQLVAT 234 >gi|126730112|ref|ZP_01745924.1| transporter, Tim44 family protein [Sagittula stellata E-37] gi|126709492|gb|EBA08546.1| transporter, Tim44 family protein [Sagittula stellata E-37] Length = 219 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 10/227 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M + +L+ A I F+ L+LR VLG + G E+P + R + G Sbjct: 1 MQNPLLQLLVLAGIAVFLVLRLRSVLGTRDGFERP----TPAEKSKETTSRREFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D + E GT + + V F +FL AR +YE I+ F G + Sbjct: 57 PDHDITDHVAE----GTDAANALAAMKRVEPSFSVSEFLGGARGAYEMILMGFERGDIEG 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 ++ + V++ F++ + R+S + + VG+ +M + AS + +T IT+R VG+ Sbjct: 113 LKPFLADDVFETFSEVVEARESEGLTIDADFVGVREMTLAGASFDPDTREAEITVRYVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S + + ++ P + DIWT+ R + +PNW L++T Sbjct: 173 LTSVVKNAEGEIVEGSPTAVKRQKDIWTYARTMGADDPNWQLVATDE 219 >gi|114706069|ref|ZP_01438972.1| Calcium-binding EF-hand [Fulvimarina pelagi HTCC2506] gi|114538915|gb|EAU42036.1| Calcium-binding EF-hand [Fulvimarina pelagi HTCC2506] Length = 229 Score = 262 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 15/229 (6%) Query: 19 ITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF------SKRDERGIITLGKGKKKDN-- 70 + V QL VLG++TGNE+P ++ ++TL + D Sbjct: 1 MAAIVLFQLYNVLGRRTGNERPPFDPYTRNRSRDRSGESEDAAGDNVVTLPNRRANDRNE 60 Query: 71 -------LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 I+ + GT LNK +R I +FDPK+FL A+ +YE +VD+F +G Sbjct: 61 DVPAGVRYAEIDRVSETGTPLNKELRKIKDADPNFDPKEFLEGAKIAYEMVVDAFAQGDR 120 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 + + L+ VY+ F +++TR+ + + ++SS +GIDD KI++A + +TIRIV + Sbjct: 121 NTLRNLLSPDVYEGFEAAIATREESGETMRSSFIGIDDAKIVSAELRGREALVTIRIVSE 180 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ISA+ + + ++ D E +V DIWTF R+ +PNW L+ T+ E Sbjct: 181 MISATLNSNGDVLDGDMETVVEVRDIWTFGRDTKSRDPNWKLVGTESEE 229 >gi|149912880|ref|ZP_01901414.1| transporter, Tim44 family protein [Roseobacter sp. AzwK-3b] gi|149813286|gb|EDM73112.1| transporter, Tim44 family protein [Roseobacter sp. AzwK-3b] Length = 219 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 58/224 (25%), Positives = 109/224 (48%), Gaps = 8/224 (3%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G E P +G + + G Sbjct: 1 MNSPLLQLLVLAGIAIFLILRLKSVLGTRDGFEGPPRSERAGAT---PQRRDTFEVIEGG 57 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D +D++++ G+ + + + F+ FL AR +YE I+ +F G++ Sbjct: 58 PDYDIIDNVSD----GSDAADALARMKRIEPSFNVTQFLQGARGAYEMILMAFERGQLED 113 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI-EENTVYITIRIVGQF 184 + +D VY+ F + R+ V++ +G+ + K+ A++ ++N IT+R VG+ Sbjct: 114 VAPFLDEDVYEAFAQVIDARQEQGLIVEAEFLGLRETKLAEATLSDDNRAAITVRFVGEL 173 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S D + ++ D + + DIWTF R + +PNW L++T Sbjct: 174 TSIVRDANGEIVEGDAKTAKRQKDIWTFERVMGSDDPNWRLVAT 217 >gi|89067415|ref|ZP_01154928.1| transporter, Tim44 family protein [Oceanicola granulosus HTCC2516] gi|89046984|gb|EAR53038.1| transporter, Tim44 family protein [Oceanicola granulosus HTCC2516] Length = 220 Score = 261 bits (667), Expect = 7e-68, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 109/225 (48%), Gaps = 9/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+LR VLG + G EKP + + D + + G Sbjct: 1 MNSPIIQLLVLAGIAVFLILRLRSVLGTREGFEKPPVTESDRSALRRRPD---LEVIEGG 57 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D +D ++ G+ + + F DFL AR +YE I+ +F G + Sbjct: 58 PDRDIVDHVD----AGSDAADALARMKRAEPAFGVGDFLGGARGAYEMILMAFENGDLSE 113 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 ++ + VY+ F+ + R+ +V+++ VG+ ++ + +A +E T +T+R G+ Sbjct: 114 VKDFLGPEVYEAFSQVIEERRERGLHVEATFVGLSEITLKDAEFDETTREAELTVRFTGE 173 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S D ++ P + D+WTF R + ++PNW+L++T Sbjct: 174 ITSVVRDAGGDIVEGSPTEIKRQRDVWTFARTMGANDPNWILVAT 218 >gi|254460692|ref|ZP_05074108.1| import inner membrane translocase, subunit Tim44 [Rhodobacterales bacterium HTCC2083] gi|206677281|gb|EDZ41768.1| import inner membrane translocase, subunit Tim44 [Rhodobacteraceae bacterium HTCC2083] Length = 217 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 12/225 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G E+P + V S R + G Sbjct: 1 MNSPIIQLLVLAGIAVFLILRLKNVLGTREGFEQPPA------QVPSGRKRPEFEVIEGG 54 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D + + + + + + F DFL AR +YE I+ F G++ Sbjct: 55 PDPDIADHTDGMPEA----AEALAKMKAAEPSFGVSDFLGGARGAYEMILIGFERGEMAD 110 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183 I+ +D VY F + + R V++ VGI +M + +A+ ++ ++++ +G+ Sbjct: 111 IKPFLDDDVYASFAEVVEMRAKQGLTVEAEFVGIREMSLADATFDDENGIGEVSVKFIGE 170 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S D ++ D + + DIWTF R + +PNW L++T Sbjct: 171 MTSVVRDNAGEIVEGDAKKVKRQKDIWTFARKMGSDDPNWQLVAT 215 >gi|190889648|ref|YP_001976190.1| translocase transmembrane protein [Rhizobium etli CIAT 652] gi|190694927|gb|ACE89012.1| putative translocase transmembrane protein [Rhizobium etli CIAT 652] Length = 233 Score = 260 bits (666), Expect = 9e-68, Method: Composition-based stats. Identities = 78/232 (33%), Positives = 122/232 (52%), Gaps = 6/232 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER--GIITLG 63 M S DF+ L F +F QLR VLG++TGNEKP + + ++TL Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYQPRDAAPAEAADAGKVVTLP 60 Query: 64 K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + +D +I+ + GT LN+ +R + F PK+FLN AR +YE IV ++ Sbjct: 61 RRDATAEDEDRFSAIDAVAAPGTPLNESLRALNKADASFTPKEFLNGARMAYEMIVMAYA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY F+ ++ R++ + VKS+ VGID +I +A + IT+R Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGTEAQITVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 IV Q ISA+YDK ++LI D E +V D+WTF P + ++G Sbjct: 181 IVSQLISATYDKADVLIEGDAENVAEVNDLWTFAPRYPLARSELETCGDRIG 232 >gi|254512041|ref|ZP_05124108.1| transporter, Tim44 family [Rhodobacteraceae bacterium KLH11] gi|221535752|gb|EEE38740.1| transporter, Tim44 family [Rhodobacteraceae bacterium KLH11] Length = 219 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 104/227 (45%), Gaps = 10/227 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EKP + + R + G Sbjct: 1 MNSPLIQLLVLAGIAIFLILRLKSVLGTREGFEKPP----LQQQRDTNDARRDFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D + E + + + + V F +F+ AR +YE IV F +G + Sbjct: 57 PDHDITDHVAE----DSEQAETLTAMKRVEPSFSVSEFVQGARGAYEMIVMGFEKGNLDE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 I+ + V+ F ++ R+ +++ +G+ + + + +++T IT+R +G+ Sbjct: 113 IQPFLSEEVFDTFVSVVADREDKGLTIEAEFIGVRETTLADVKFDKDTNQAEITMRFIGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S D+ +I +P + D WTF R + +PNW+L++T Sbjct: 173 LTSVVRDRGGDIIEGNPNTVKRQKDSWTFARVMGLDDPNWLLVATDA 219 >gi|90420989|ref|ZP_01228893.1| conserved hypothetical protein, Tim44 domain [Aurantimonas manganoxydans SI85-9A1] gi|90334767|gb|EAS48543.1| conserved hypothetical protein, Tim44 domain [Aurantimonas manganoxydans SI85-9A1] Length = 238 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 13/235 (5%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFS--KRDERGIITLG----- 63 F + F + V QLR VLGK+TGNE+P +S + ++TL Sbjct: 3 FGTIFFIIVAAIVLFQLRSVLGKRTGNERPPFDPYSRRDAPRDDAARNDNVVTLPNRRGG 62 Query: 64 ------KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117 ++I+++ GT +N +R I FDPK+FL+ A+ +YE IV + Sbjct: 63 TEIEGEAAPAATPYEAIDKVAKPGTPVNAELRRIRDADPSFDPKEFLDGAKVAYEMIVTA 122 Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 F +G ++ L+ VYQ F ++S R+ ++ ++ S VGIDD I+ A ++ +T Sbjct: 123 FADGDRKLLKNLLSPDVYQGFEQAISEREQRDERMQFSFVGIDDATIVGAEQKDREAMVT 182 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +RIV Q ISA D ++ D E +V D+WTF R+ +PNW L T+ + Sbjct: 183 LRIVAQVISAVVKPDETVVDGDLETVVEVKDVWTFARDTRSRDPNWKLAGTESED 237 >gi|163850987|ref|YP_001639030.1| import inner membrane translocase subunit Tim44 [Methylobacterium extorquens PA1] gi|218529814|ref|YP_002420630.1| import inner membrane translocase subunit Tim44 [Methylobacterium chloromethanicum CM4] gi|240138118|ref|YP_002962590.1| hypothetical protein MexAM1_META1p1451 [Methylobacterium extorquens AM1] gi|254560680|ref|YP_003067775.1| hypothetical protein METDI2225 [Methylobacterium extorquens DM4] gi|163662592|gb|ABY29959.1| import inner membrane translocase subunit Tim44 [Methylobacterium extorquens PA1] gi|218522117|gb|ACK82702.1| import inner membrane translocase subunit Tim44 [Methylobacterium chloromethanicum CM4] gi|240008087|gb|ACS39313.1| conserved hypothetical protein, putative membrane protein [Methylobacterium extorquens AM1] gi|254267958|emb|CAX23826.1| conserved hypothetical protein, putative membrane protein [Methylobacterium extorquens DM4] Length = 239 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 109/237 (45%), Gaps = 11/237 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSG---KYVFSKRDERGIITL 62 DS D L+F + FV +LR VLG+KTG E+ + + + ++ L Sbjct: 2 QDSFDATTLIFLALAVFVIWRLRSVLGQKTGTERSPFRPVERNRTEPPAGRGEGDNVVRL 61 Query: 63 GKGKKKDNL--------DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 + + G+ + + + +V + F+P+ FL A+ +YE I Sbjct: 62 PGADRSPAGAAAVQTAARDWRGIAEPGSAVARGLEQVVQLEPAFEPRAFLEGAKGAYETI 121 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 V +F +G + L+ V + F ++S R+ + +++ + ID +I ++ Sbjct: 122 VTAFAKGDRKTLRALLSREVCEGFERAISEREKRNETAETTFISIDKAEIAAVEVKNRAA 181 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 IT+R + I+A+ D D +I + E +V D+WTF R + +PNW L++T G Sbjct: 182 QITVRFLSNLITATRDADGKVIDGNAETGVEVPDVWTFARTLGSRDPNWQLVATDAG 238 >gi|46201691|ref|ZP_00054533.2| COG4395: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 219 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 60/220 (27%), Positives = 112/220 (50%), Gaps = 11/220 (5%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 I+ FA + F+ L+LR VLGK+TG E+P K+ + ++ L ++ + Sbjct: 10 IVFFAMVAAFLVLRLRSVLGKRTGTERPPE-----KWSPVEAPADNVVDLQSVRRSASEP 64 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 P T L + + I + FD FL A+ ++E IV +F G ++ L+ Sbjct: 65 ------PAETPLGQGLAAIRAADRGFDLDGFLGGAKAAFEMIVIAFAHGDKATLQPLLAP 118 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 VY+ F++++ R+ + + +++ LVGI +++ A ++ +TI+ V + ++A D Sbjct: 119 DVYRHFSEAIDARRQHGETLQTELVGIRSAELVEAGMDGRFAALTIKFVSEQVNALRDAK 178 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ++ +PE VID+WTF R+ +PNW L +T + Sbjct: 179 GEVVEGNPERVIDVIDLWTFRRDTRSPDPNWALTATHTPD 218 >gi|121602069|ref|YP_989543.1| Tim44 domain-containing protein [Bartonella bacilliformis KC583] gi|120614246|gb|ABM44847.1| Tim44 domain protein [Bartonella bacilliformis KC583] Length = 230 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 121/225 (53%), Gaps = 4/225 (1%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSG--KYVFSKRDERGIITLGKG- 65 D + ++ + VF+QLR VLGK+TG E+P +SG K I + + Sbjct: 3 FDVVFVIALVVMVIVFVQLRNVLGKRTGFERPPFNPYSGHSKKQVEADTTGDITSFPQQI 62 Query: 66 -KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 +K + I+ + P G+ LN +R I + F P+ F+N + +YE I+ +F +G Sbjct: 63 NAQKGDFSDIDAIAPKGSALNDGLRAIRQADSSFSPQFFINGVQVAYEMIMTAFAQGNRD 122 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 +++L+ V++ F ++ R+ + ++ + VGI+ ++ I A +++ +T+RIV + Sbjct: 123 QLKELLSQNVFESFCKAIEQREKRNERIQFTFVGINKVEFIAAEMQKREELLTVRIVSEI 182 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 IS Y++ I DPE ++ D+WTFVR+ NPNW L +T+ Sbjct: 183 ISVIYNEQEERIDGDPEAIVEIRDVWTFVRDSVSKNPNWKLFATE 227 >gi|254463881|ref|ZP_05077292.1| transporter, Tim44 family [Rhodobacterales bacterium Y4I] gi|206684789|gb|EDZ45271.1| transporter, Tim44 family [Rhodobacterales bacterium Y4I] Length = 214 Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 11/223 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 +L+ A I F+ L+LR VLG + G EKP + + + G +D Sbjct: 1 MIQLLVLAGIAVFLILRLRSVLGTREGFEKPPLPQSEARGRRP-----DLEVIEGGPDRD 55 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 D + E G++ + + + F ++F+ AR +YE I+ F G + I+ Sbjct: 56 ITDYVAE----GSKQAQALAAMKRAEPSFQVQEFVQGARGAYEMILMGFEHGNLDDIQPF 111 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISA 187 + V+ F D+++ R+ +++ +G+ + + +A + T IT+R VG+ S Sbjct: 112 LAEDVFDSFVDAVAQREDKGYKIEADFIGVRETTLQDAQFDPQTGRAEITMRFVGELTSV 171 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D+ ++ DP+ + D W F RN+ +PNW L++T Sbjct: 172 VRDRGGDIVEGDPKAIKRQKDTWIFARNMGSDDPNWQLVATDA 214 >gi|86136747|ref|ZP_01055325.1| transporter, Tim44 family protein [Roseobacter sp. MED193] gi|85826071|gb|EAQ46268.1| transporter, Tim44 family protein [Roseobacter sp. MED193] Length = 218 Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 111/226 (49%), Gaps = 11/226 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+LR VLG + G EKP + + + G Sbjct: 1 MESPLISLLVLAGIAVFLILRLRSVLGTREGFEKPPVAPTQKRSNGP-----DLEVIEGG 55 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D D + E G+ K + + V F +F+ AR++YE I+ F +G++ Sbjct: 56 PDRDITDYVEE----GSDQAKALAAMKRVEPSFQVGEFVQGARSAYEMILMGFEKGELDD 111 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 I+ + V+ F ++++ R+ +++ +G+ + +++A +E T +T+R +G+ Sbjct: 112 IQGFLAEDVFDSFVEAVAQREDQGLTIEAEFIGVRETAVVDAIFDETTGVAELTMRFIGE 171 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 S +++ ++ D + + DIW F R++ +PNW L++T Sbjct: 172 MTSVVRNREGEIVEGDAKAIKRQKDIWVFARSMGVDDPNWQLVATD 217 >gi|126734398|ref|ZP_01750145.1| import inner membrane translocase, subunit Tim44 [Roseobacter sp. CCS2] gi|126717264|gb|EBA14128.1| import inner membrane translocase, subunit Tim44 [Roseobacter sp. CCS2] Length = 220 Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 62/225 (27%), Positives = 98/225 (43%), Gaps = 9/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+LRGVLG + G EKP K D + G Sbjct: 1 MNSPLIQLLVLAGIAVFLILRLRGVLGTREGFEKPAVTRPEPSSRVGKPD---FDVIEGG 57 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D I E G+ K + D+ F+ +FL AR +YE I+ +F G + + Sbjct: 58 PDLDITDHIEE----GSDSAKALADMKRADPSFNVSEFLGGARGAYEMILMAFENGDLDS 113 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183 I + VY+ F + R+ V + +GI DM + A ++ +++R + Sbjct: 114 IVPFISEDVYEAFASVVDERQRQGLTVDAKFIGISDMTLTEAVFDDFSKEGEVSVRFKSE 173 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S D +I + D WTF R + +PNW L++T Sbjct: 174 MTSVVRDNAGDIIEGSETEIKRQKDTWTFARKMDADDPNWRLVAT 218 >gi|170750111|ref|YP_001756371.1| import inner membrane translocase subunit Tim44 [Methylobacterium radiotolerans JCM 2831] gi|170656633|gb|ACB25688.1| import inner membrane translocase subunit Tim44 [Methylobacterium radiotolerans JCM 2831] Length = 237 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 113/235 (48%), Gaps = 9/235 (3%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEK-PFSGFFSGKYVFSKRDERGIITLGK 64 DS D ++F + FV +LR VLG+KTG E+ PF + R + + Sbjct: 2 QDSFDVTTIIFLALAVFVIWRLRSVLGQKTGAERSPFKPVDRSRTEPQARSDGDNVVRLP 61 Query: 65 GKKK--------DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116 G + + G+ + + + + FDP+ F+ A+++YEAI+ Sbjct: 62 GADRVQAAPPPAAAPRDWRGIAEPGSEVARGLEACIQAEPSFDPRAFIEGAKSAYEAIMI 121 Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F +G + L+ V + F +++ R+ N + ++++ V ID +I+ + ++ Sbjct: 122 AFAKGDRKTLRGLLSKEVGEAFERAIAERERNRQTLETTFVSIDKAEIVAVEVRNRVAHV 181 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 T+R + I+A+ + D ++ E +V D+WTF R + +PNW L++T+ G Sbjct: 182 TVRFLSNLITATRNADGKVVDGSAETVVEVPDVWTFARTLGSRDPNWQLVATEAG 236 >gi|259417909|ref|ZP_05741828.1| import inner membrane translocase, subunit Tim44 [Silicibacter sp. TrichCH4B] gi|259346815|gb|EEW58629.1| import inner membrane translocase, subunit Tim44 [Silicibacter sp. TrichCH4B] Length = 218 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 57/227 (25%), Positives = 113/227 (49%), Gaps = 11/227 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EKP + +R + Sbjct: 1 MESPLIELLVLAGIAVFLILRLKSVLGTREGFEKPPLANNE-----APAPQRKFEVIEGS 55 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D + ++E G+ + + D+ + F +F+ AR +YE I+ F G++ Sbjct: 56 PDDDIVAYVDE----GSPQAQALSDMKRADSSFQVAEFVQGARGAYEMILMGFETGELDG 111 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183 I+ + ++Q F D++S R+ +++ +G+ + I++A+ + +T +T+R VG+ Sbjct: 112 IQPFISEEIFQSFVDAVSAREDQGLTIEAEFIGVRETTIVDATFDAATSTAEVTVRFVGE 171 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 SA ++ ++ DP+ + D WTF R + +PNW+L++T Sbjct: 172 LTSAVRNRAGEIVEGDPKAVKRQKDTWTFSRQMGTGDPNWLLVATDA 218 >gi|163738003|ref|ZP_02145419.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis BS107] gi|163742601|ref|ZP_02149987.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis 2.10] gi|161384186|gb|EDQ08569.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis 2.10] gi|161388619|gb|EDQ12972.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis BS107] Length = 218 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 106/227 (46%), Gaps = 11/227 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EKP + + + + G Sbjct: 1 MESPVIQLLVLAGIAVFLILRLKSVLGTREGFEKPAVPQADRQNRRPE-----LEVIEGG 55 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D +D + E P + + + F+ +DF+ AR +YE I+ +F G++ Sbjct: 56 PDHDIVDYVPEDSPQASD----LAAMKKAEPSFEVRDFVQGARGAYEMILMAFERGELDD 111 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 IE + V+ F +++ R+ +++ +G+ + + + S + T IT+R V + Sbjct: 112 IEAFLAPDVFDSFVTAVAHREDQGLTIEAEFIGVRETTLTDTSFDPATGDAQITMRFVAE 171 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S D+ ++ DP+ + D W F R + ++PNW L++T Sbjct: 172 LTSVVRDRGGDIVEGDPKAVKRQKDTWVFGRTMGSADPNWHLVATDA 218 >gi|209966267|ref|YP_002299182.1| hypothetical protein RC1_3002 [Rhodospirillum centenum SW] gi|209959733|gb|ACJ00370.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 230 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 55/225 (24%), Positives = 108/225 (48%), Gaps = 6/225 (2%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEK----PFSGFFSGKYVFSKRDERGIITLGKGK 66 F IL+F + F+ +LR VLG++ G E+ PF+ + + ++ L Sbjct: 8 FDILIFGMVAAFLVYRLRSVLGRRHGEERQRPNPFTPPPKAGQAPAPAESDNVVPLPDRG 67 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + E PI L + +R I + F+ K FL A+ ++E IV +F +G + Sbjct: 68 RPPEAPLPVETGPIS--LEEGLRQIRAADPTFNEKHFLQGAKAAFEMIVKAFADGDTPTL 125 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 L+ VY F +++ R++ + ++ + + + + A ++ +TIR + + Sbjct: 126 RPLLADDVYDGFAEAIRKRQAAGETRETRITAFESVDLKEARMDGRHAMVTIRFITHQVD 185 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + + ++ DP+ +V+DIWTF RN +PNW+L+ T++ Sbjct: 186 CTVNAAGDVVDGDPDEAIEVVDIWTFSRNTRSPDPNWLLVETRVP 230 >gi|163757477|ref|ZP_02164566.1| hypothetical protein HPDFL43_18742 [Hoeflea phototrophica DFL-43] gi|162284979|gb|EDQ35261.1| hypothetical protein HPDFL43_18742 [Hoeflea phototrophica DFL-43] Length = 234 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 68/218 (31%), Positives = 119/218 (54%), Gaps = 7/218 (3%) Query: 22 FVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRD---ERGIITLG----KGKKKDNLDSI 74 VF+QLR VLGK+TG+E+P + +D + ++TL + + D ++ Sbjct: 17 IVFIQLRAVLGKRTGHERPPREQMERRDQTDAQDGIDDPKVVTLPRRGREAAEPDAFAAV 76 Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 + G+ LNK +R++V F+PK+F+ A +YE IV ++ +G ++ L+ V Sbjct: 77 DAYAEPGSDLNKGLRELVKADPSFNPKEFVGGATMAYEMIVSAYADGDRKTLKSLLSREV 136 Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNL 194 + F ++ R++ + V+S+ VGI+ II A ++ +T+RI+ Q ISA+ DKD Sbjct: 137 FDGFVSAIDEREARGETVRSNFVGIEKANIIQAEMKGTEANVTLRIISQLISATLDKDGE 196 Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ++ D V D+WTF R+ +PNW LI+T+ + Sbjct: 197 VVEGDLVEVTDVNDVWTFTRDTRSRDPNWRLIATEADQ 234 >gi|84684638|ref|ZP_01012539.1| hypothetical protein 1099457000260_RB2654_13474 [Maritimibacter alkaliphilus HTCC2654] gi|84667617|gb|EAQ14086.1| hypothetical protein RB2654_13474 [Rhodobacterales bacterium HTCC2654] Length = 219 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M S +++ A I F+ L+LR VLG + G EKP + V + + G Sbjct: 1 MSSPIIQLIVLAAIAIFLILRLRDVLGTREGFEKPVVSRTESQRV---DNRGKFEVIEGG 57 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D + + I + + + F DFLN AR +YE I+ +F G++ Sbjct: 58 PDTDITDHVEDPASI-----EALAKMKGAERSFAVGDFLNGARGAYEMILMAFEAGELDK 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183 I+ + VY+ F + R+ + + ++ VG+ +MK++ A ++ ITIR +G+ Sbjct: 113 IKPFLSDEVYESFATVVEQREKDGYKIDANFVGLREMKLVEAEFDDESREGEITIRFIGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S DK ++ +P + D+WTF R + NPNW L++T Sbjct: 173 ITSVVRDKSGEIVEGNPTEVKRQKDVWTFARIMGSENPNWQLVAT 217 >gi|99082695|ref|YP_614849.1| import inner membrane translocase, subunit Tim44 [Ruegeria sp. TM1040] gi|99038975|gb|ABF65587.1| import inner membrane translocase subunit Tim44 [Ruegeria sp. TM1040] Length = 218 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 60/227 (26%), Positives = 114/227 (50%), Gaps = 11/227 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EKP + +R + Sbjct: 1 MESPLIELLVLAGIAVFLILRLKSVLGTREGFEKPPLASSETR-----APQRKFEVIEGS 55 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D + ++E G+ +K + D+ + F +F+ AR +YE I+ F G++ Sbjct: 56 PDDDIIAYVDE----GSPQSKALSDMKRSDSSFQVAEFVQGARGAYEMILMGFETGELDG 111 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQ 183 I+ + ++Q F D++S R+ +++ +G+ + II+A+ + +T IT+R VG+ Sbjct: 112 IQPFISDDIFQSFVDAVSAREDQGLTIEAEFIGVRETSIIDATFDTATSTAEITVRFVGE 171 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 SA ++ ++ DP+ + D WTF R + +PNW+L++T Sbjct: 172 LTSAVRNRAGEIVEGDPKAVKRQKDTWTFSRQMGTGDPNWLLVATDA 218 >gi|254476055|ref|ZP_05089441.1| transporter, Tim44 family [Ruegeria sp. R11] gi|214030298|gb|EEB71133.1| transporter, Tim44 family [Ruegeria sp. R11] Length = 214 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 101/223 (45%), Gaps = 11/223 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 +L+ A I F+ L+L+ VLG + G EKP + + + G +D Sbjct: 1 MIQLLVLAGIAVFLILRLKSVLGTREGFEKPIAPPAERPSKRPE-----FEVIEGGPDQD 55 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 D + P G+ + + + V F +DF+ AR +YE I+ +F G++ I+ Sbjct: 56 ITDYV----PEGSAQAEDLAAMKKVEPSFQVRDFVQGARGAYEMILMAFERGELDDIQPY 111 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQFISA 187 + V+ F +++ R+ +++ +G+ + + + S + IT+R V + S Sbjct: 112 LAPDVFDSFVTAVAHREDQGLTIEADFIGVRETTLTDTSYDSVTGEAQITMRFVAEMTSV 171 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + ++ DP+ + D W F R + S+PNW L++T Sbjct: 172 VRNSAGEIVEGDPKAIKRQKDTWVFGRTMGSSDPNWFLVATDA 214 >gi|149204297|ref|ZP_01881264.1| transporter, Tim44 family protein [Roseovarius sp. TM1035] gi|149142182|gb|EDM30229.1| transporter, Tim44 family protein [Roseovarius sp. TM1035] Length = 219 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G E P R R + G Sbjct: 1 MNSPILQLLVLAGIAIFLILRLKSVLGTRDGFEGP----TRSAPAPETRRRREFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D +D + P + + ++ + DF FL AR +YE I+ +F GK+ Sbjct: 57 PDHDIVDHV----PEDSDAAAALAEMKRIEPDFSVTTFLQGARGAYEMILMAFERGKLDE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 + +D VY+ F + R+ +++ +G+ ++ + +A + +T I++R VG+ Sbjct: 113 VTPFLDRDVYETFAQVVDAREQQGLTIEAEFIGVRELTLADARFDADTRRAEISVRYVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 IS D ++ P + D+WT+ R + +PNW L++T Sbjct: 173 LISVVRDSTGEIVEGVPGQSKRQKDVWTYERVMGADDPNWRLVAT 217 >gi|188580934|ref|YP_001924379.1| import inner membrane translocase subunit Tim44 [Methylobacterium populi BJ001] gi|179344432|gb|ACB79844.1| import inner membrane translocase subunit Tim44 [Methylobacterium populi BJ001] Length = 242 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 14/240 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSG---KYVFSKRDERGIITL 62 DS D L+F + FV +LR VLG+KTG E+ + + + ++ L Sbjct: 2 QDSFDATTLIFLALAVFVIWRLRSVLGQKTGTERSPFRPVERNRTEPPAGRGEGDNVVRL 61 Query: 63 GKGKKKDNL-----------DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY 111 + + + + + + +V V FDP+ FL A+ +Y Sbjct: 62 PGADRAQAGAQAGTATQTATRDWRGIAEPNSAVARGLEQVVQVEPGFDPRAFLEGAKGAY 121 Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171 E IV +F +G + L+ V + F ++S R+ + +++ + ID +I ++ Sbjct: 122 ETIVTAFAKGDRKTLRALLSREVCEGFERAISEREKRRETAETTFISIDKAEIAAVEVKN 181 Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 IT+R + I+A+ D D +I + E +V D+WTF R + +PNW L++T G Sbjct: 182 RAAQITVRFLSNLITATRDADGKVIDGNAETGVEVPDVWTFARTLGSRDPNWQLVATDAG 241 >gi|85705737|ref|ZP_01036834.1| transporter, Tim44 family protein [Roseovarius sp. 217] gi|85669727|gb|EAQ24591.1| transporter, Tim44 family protein [Roseovarius sp. 217] Length = 219 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G E P R + G Sbjct: 1 MNSPILQLLVLAGIAIFLILRLKSVLGTRDGFEGP----ARNAPTPETSRRREFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D +D + P + + D+ + DF FL AR +YE I+ +F GK+ Sbjct: 57 PDHDIVDHV----PEDSEAAGALADMKRIEPDFSVTTFLQGARGAYEMILMAFERGKLDE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183 I +D VY+ F + +R+ ++++ +G+ ++ + +A + IT+R VG+ Sbjct: 113 ITPFLDREVYETFAQVVDSREQQGLSIEAEFIGVRELSLFDAKFDAATRRAEITVRYVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 +S D + ++ P + DIWT+ R + +PNW L++T Sbjct: 173 LVSVVRDSNGEIVEGAPGQSKRQKDIWTYERIMGSDDPNWRLVAT 217 >gi|254440619|ref|ZP_05054113.1| Tim44-like domain family [Octadecabacter antarcticus 307] gi|198256065|gb|EDY80379.1| Tim44-like domain family [Octadecabacter antarcticus 307] Length = 219 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 109/225 (48%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+LR VLG + G EKP + S+R + + G Sbjct: 1 MNSPVLQLLVLAGIAIFLILRLRNVLGTREGFEKPKVAPA----IPSRRPTPDLEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D ++ + + +V+ + + F+ ++FL AR +YE I+ F +G + Sbjct: 57 PDPDVTDYVD----ADSDVARVLTAMKTADRSFNVREFLRGARGAYEMILTGFEKGDIAE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 I+ + S VY F + R+ + +V +GI + +++A +E T I+I+ + + Sbjct: 113 IKPFLSSDVYDAFAGVVEAREKDGLSVDFKFIGISETTLVDAEFDETTKNAEISIKFLCE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 SA YDK L K D+WTF R + +PNW L++T Sbjct: 173 STSAVYDKGGDLKEGSATDIKKQRDVWTFGRTMGTGDPNWFLVAT 217 >gi|144900161|emb|CAM77025.1| Mitochondrial import inner membrane translocase, subunit Tim44 [Magnetospirillum gryphiswaldense MSR-1] Length = 243 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 104/218 (47%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 I+ FA + F+ L+LR VLGK+TGNE+P + K D +T + + D Sbjct: 10 IVFFAVVAVFLILRLRSVLGKRTGNEEPPRWTRTPKDDGETADNVIDLTRARRPVEAEPD 69 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 ++ L + I + F FL+ AR ++E IV +F G A+ L+ Sbjct: 70 VTADVAATAGPLARGEAAIRARDPSFSNTGFLSGARMAFEMIVGAFAAGDKKALRPLLAD 129 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 +VY+ F D++ R + + + ++GI +II A + +T+R V + I+ D D Sbjct: 130 QVYKPFCDAIDARARAGEELSTEIMGIKSAEIIEAIMVGTVAQVTVRFVSEQINVIKDLD 189 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ DP V D WTF R+ +PNW L +T+ Sbjct: 190 GRIVEGDPSRIVPVTDEWTFSRDTRSKDPNWHLSATRA 227 >gi|304392739|ref|ZP_07374679.1| import inner membrane translocase, subunit Tim44 [Ahrensia sp. R2A130] gi|303295369|gb|EFL89729.1| import inner membrane translocase, subunit Tim44 [Ahrensia sp. R2A130] Length = 230 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 107/232 (46%), Gaps = 14/232 (6%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 D LL F+F +LR VLG + G EKP ++ ++TL K+ + Sbjct: 2 DLFTLLPLLAAVFLFWKLRSVLGTRNGIEKPPYDPYTND---PNEAADNVVTLPGAKRAN 58 Query: 70 NLDS-----------INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 D+ I +L L + + I S FDP++FL R +YE IV F Sbjct: 59 APDAEEDAGEAARKRIGKLAGKDKSLERGLLAIHSRDPGFDPEEFLQGGRMAYEMIVTGF 118 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 +G +E L+ VY+ F + R + V +S VGID I A + + IT+ Sbjct: 119 ADGDKRTLENLLSREVYESFATVIDERSERGEKVNASFVGIDKAVIEGAEVLRDEAQITV 178 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 R V + ISA+ D + +I D + +V D+WTF R + +PNW L++T Sbjct: 179 RFVSEMISATLDSSDEVIEGDLQEVAEVTDVWTFARPVKSRDPNWKLVATDA 230 >gi|217977326|ref|YP_002361473.1| import inner membrane translocase subunit Tim44 [Methylocella silvestris BL2] gi|217502702|gb|ACK50111.1| import inner membrane translocase subunit Tim44 [Methylocella silvestris BL2] Length = 239 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 11/234 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFF-SGKYVFSKRDERG---IIT 61 +S D ++FA + FV +LR +LG +TG EKP F +G+ +KR G +I Sbjct: 2 QNSFDVSTIIFALLAAFVVWKLRSILGARTGTEKPPRNPFIAGEPSAAKRPGEGEGKVIP 61 Query: 62 LGKGKKK-------DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 L D G++ + I + F+ K FL A+ +YE I Sbjct: 62 LPGASAPIAQAAAADPSSRWKPHAEPGSKAWAGLDAIAAADRSFEIKSFLEGAKTAYEMI 121 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 V F +G ++ L+D VY F +L+ R+ +++S V ID+ I +A + Sbjct: 122 VIGFADGDRPMLQNLLDKSVYDSFVTALTEREKRGDKIETSFVAIDNGAIADAELNGRMA 181 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 I +R Q I+A+ + +I +PE ++ D W F R++ +PNW LIST Sbjct: 182 EIAVRFSAQIITATRNAAGTVIEGNPEQVVEINDTWRFARDVGARDPNWRLIST 235 >gi|182680015|ref|YP_001834161.1| import inner membrane translocase subunit Tim44 [Beijerinckia indica subsp. indica ATCC 9039] gi|182635898|gb|ACB96672.1| import inner membrane translocase subunit Tim44 [Beijerinckia indica subsp. indica ATCC 9039] Length = 260 Score = 254 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 20/248 (8%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYV------------- 50 D I++FA + F+ +LR VLG + GNE+P G++ Sbjct: 2 THEPPFDMSIVIFALLAAFLIWKLRSVLGTRQGNEEPRDNSVPGQWPSLFSPKSQDPSQA 61 Query: 51 -------FSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDF 103 R G + + + + + I F P F Sbjct: 62 NKNGAPGQPTFPNRPSPAGASGAPAEAGRNWSAFVEPNSPAAAGLEAIAKADPAFAPGPF 121 Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163 L AR++YE IV++F EG+ A+ L+ VY F +++ R+S V+ + V +D K Sbjct: 122 LEGARHAYEMIVNAFAEGQRSALANLLVRDVYAGFEAAITERESQGHKVELTFVSLDAAK 181 Query: 164 IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223 I A++ IT+R + I + D ++ P+ V D+WTF R I +PNW Sbjct: 182 IEEAALFHQIAEITLRYKAKMIKVTRDAQGAVVEGSPDHVVDVDDLWTFERMIGSQDPNW 241 Query: 224 VLISTKLG 231 L +TK G Sbjct: 242 KLAATKTG 249 >gi|13473820|ref|NP_105388.1| hypothetical protein mlr4544 [Mesorhizobium loti MAFF303099] gi|14024571|dbj|BAB51174.1| mlr4544 [Mesorhizobium loti MAFF303099] Length = 211 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 63/211 (29%), Positives = 114/211 (54%), Gaps = 8/211 (3%) Query: 30 VLGKKTGNEKPFSGFFSGK--YVFSKRDERGIITLG------KGKKKDNLDSINELFPIG 81 +LG++TG+E+P +S + + +++L + D +I+ Sbjct: 1 MLGRRTGSERPPFDPYSAARTDKDATQKPENVVSLPRKRLPGEPAPADAYTAIDAFAKPD 60 Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 T LNK +R I FDPK F++ A+ +YE IV ++ +G ++ L+ V+ F + Sbjct: 61 TDLNKGLRAIKDNDPSFDPKGFVDGAKMAYEMIVMAYADGDRKTLKNLLSREVFDGFVAA 120 Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201 + R++ + ++SS VGID I++A ++ ++T+RI+ + ISA+ DK +I DPE Sbjct: 121 IGEREAKSEKIQSSFVGIDKADIVSAEMKGGEAHVTLRIISELISATRDKAGTVIDGDPE 180 Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +V D+WTF R+ +PNW LI+T+ + Sbjct: 181 TVAEVKDVWTFARDTRSRDPNWKLIATEEED 211 >gi|312115344|ref|YP_004012940.1| import inner membrane translocase subunit Tim44 [Rhodomicrobium vannielii ATCC 17100] gi|311220473|gb|ADP71841.1| import inner membrane translocase subunit Tim44 [Rhodomicrobium vannielii ATCC 17100] Length = 233 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 56/236 (23%), Positives = 112/236 (47%), Gaps = 13/236 (5%) Query: 6 MDSGDFLI--LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 M S F + +L + +FL+LR VLG++TG+E+ ++ + ++ L Sbjct: 1 MTSEIFDLTNILLLAVAVAIFLRLRSVLGRRTGDEETRLDNYARDAAPT---RDNVVPLP 57 Query: 64 KGKKKDNLDSINELF--------PIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115 + + + P + + +R I + FD F+N A+ +YE+I+ Sbjct: 58 RAEPRPGGAPSAGPSVDERLGNVPADSAVRAPLRQIATSDPSFDTASFVNGAKIAYESII 117 Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY 175 ++ +G + L+ V+ FN ++ R+++ + V+ +GI +I+ A + Sbjct: 118 TAYAKGDRETLRHLLAPEVFDSFNVVINDREASGETVEFHFIGISSSEIVEAQLLGRVAQ 177 Query: 176 ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + +R V ++A+ DK ++ D + +V DIWTF R++ NPNW L++T Sbjct: 178 VKVRFVSDLVTATRDKHGEVVDGDDKAVRQVTDIWTFSRDVSSPNPNWQLVATDAA 233 >gi|110677837|ref|YP_680844.1| hypothetical protein RD1_0444 [Roseobacter denitrificans OCh 114] gi|109453953|gb|ABG30158.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 220 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 107/225 (47%), Gaps = 10/225 (4%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 S +L+ A I F+ +L+ VLG + G E + + R + G Sbjct: 3 SSPLIQLLVLAGIAVFLIFRLKNVLGTRDGFE----PGPAQAPTSDRSPTRDFEVIEGGP 58 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 D D ++E + + + ++ + F+ +FL AR +YE IV + G++ I Sbjct: 59 DLDITDHVDEH----SDAAEALANMKRLEPGFNVTEFLGGARGAYEMIVMGYENGELADI 114 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQF 184 + + +Y+ F D ++ R+ ++++ +G+ ++K+I+A+++ +T +TIR + Sbjct: 115 QPFLAEDIYESFVDGVAAREDQGLTIEANFIGVRELKLIDATLDPDTNEAELTIRFTAEL 174 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 SA + + +I + D W+F R + +PNW+L+ST Sbjct: 175 TSAVRNSEGEIIEGSLTDVKRQKDTWSFARPMGSDDPNWILVSTD 219 >gi|319406501|emb|CBI80142.1| Tim44 domain protein [Bartonella sp. 1-1C] Length = 230 Score = 250 bits (640), Expect = 9e-65, Method: Composition-based stats. Identities = 67/210 (31%), Positives = 118/210 (56%), Gaps = 4/210 (1%) Query: 24 FLQLRGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFP 79 F+QLR VLGK+ G EKP +SG K D+ + +K + I+ + P Sbjct: 18 FVQLRNVLGKRVGFEKPPFDSYSGYTKKPIEVEKNDKIVSLPDQSSSQKGDFSEIDAIAP 77 Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 G++LN +R I F P+ F+N + YE I+ +F +G + +++ + S V++ F Sbjct: 78 EGSKLNSGLRSIRQFDPSFSPQFFVNGVQIVYEIIMTAFAQGDRNRLKEHLSSDVFESFC 137 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199 +++ R+ N + ++ + VGI ++ I A +++ +T+RI+ + ISA+Y++ I + Sbjct: 138 EAIELREKNNERIQFTFVGISKIEFIAAEMQKEEALLTVRIISEMISATYNEQEECIEGN 197 Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 PE ++ DIWTF+RNI NPNW L +T+ Sbjct: 198 PEAIIEIRDIWTFIRNITSKNPNWKLFATE 227 >gi|163732954|ref|ZP_02140398.1| hypothetical protein RLO149_09850 [Roseobacter litoralis Och 149] gi|161393489|gb|EDQ17814.1| hypothetical protein RLO149_09850 [Roseobacter litoralis Och 149] Length = 220 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 54/227 (23%), Positives = 107/227 (47%), Gaps = 11/227 (4%) Query: 6 MDS-GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK 64 M+S +L+ A I F+ +L+ VLG + G E S + R + Sbjct: 1 MNSSPLIQLLVLAGIAVFLIFRLKNVLGTRDGFE----PGPSQTPMSDSAPMRDFEVIEG 56 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 G D D + E + + + ++ + F+ +FL AR +YE IV + G++ Sbjct: 57 GPDLDITDHVEEN----SDAAEALANMKRLEPGFNVTEFLGGARGAYEMIVMGYENGELA 112 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVG 182 I+ + +Y+ F D ++ R+ +++S +G+ ++K+++A+++ N +TIR Sbjct: 113 DIQPFLAEDIYESFVDGVAAREDQGLTIEASFIGVRELKLMDATLDPETNEGELTIRFTA 172 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + SA + + +I + D W+F R + +PNW+L+ST Sbjct: 173 ELTSAVRNSEGEIIEGSLTEVKRQKDTWSFARPMGSDDPNWILVSTD 219 >gi|163797060|ref|ZP_02191015.1| hypothetical protein BAL199_11141 [alpha proteobacterium BAL199] gi|159177576|gb|EDP62129.1| hypothetical protein BAL199_11141 [alpha proteobacterium BAL199] Length = 222 Score = 249 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 115/224 (51%), Gaps = 4/224 (1%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 I+L A + FV +LR VLG++TG+E+ + F+ + ++ G I + Sbjct: 2 PYLDIILLAMLAGFVIFKLRSVLGRRTGHERRPTDPFA---ESPETNDNGNIVRLPDRSA 58 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 +++D ++ P G+ + + I FD + FL A++++ IV++F +G V + Sbjct: 59 ESVDGSDDDVP-GSSMAAGIMQIKLADDGFDERQFLQGAKSAFAMIVEAFAKGDVDGLRP 117 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L+ +Y F ++ + + ++++V I ++ AS+E + +T+ V + + + Sbjct: 118 LLSRELYGGFASAIEACEKAGEIQETTIVTIRSADVVEASLENSVAKVTVEFVTEQVKVT 177 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D +I DP+ + DIWTF R+I +PNW L++T++ E Sbjct: 178 RSSDGEVIDGDPDRIDILTDIWTFARDIGNRDPNWELVATRVPE 221 >gi|294675588|ref|YP_003576203.1| import inner membrane translocase subunit Tim44 [Rhodobacter capsulatus SB 1003] gi|294474408|gb|ADE83796.1| import inner membrane translocase, subunit Tim44 [Rhodobacter capsulatus SB 1003] Length = 219 Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M F +++ A I F+ L+L+ VLG + G E R + G Sbjct: 1 MSPALFQLIVLAAIAIFLILKLKSVLGTREGYEDEPMPV----EAPGPRAADRFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D +D + P G+ + + V F+ FL ++ +YE I+ +F G + A Sbjct: 57 PDHDIIDHV----PEGSDAAVALAQMKRVEPTFNVGAFLQGSKVAYEMILMAFERGDLSA 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183 + + + V + F +++ R+ V++S +G+ ++ + AS E +T+R G+ Sbjct: 113 VRRFLAPEVLEAFETAVADRQRQGLTVEASFLGLRELVLTEASFNESSREAEVTVRFGGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 IS + D + ++ DP+ K D WTF R + S+PNW L++T Sbjct: 173 LISVARDANGQIVEGDPKAPRKQRDSWTFARVMGSSDPNWQLVAT 217 >gi|159045985|ref|YP_001534779.1| import inner membrane translocase [Dinoroseobacter shibae DFL 12] gi|157913745|gb|ABV95178.1| import inner membrane translocase [Dinoroseobacter shibae DFL 12] Length = 221 Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 55/225 (24%), Positives = 104/225 (46%), Gaps = 8/225 (3%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S IL+ + F+ L+LR VLG + G EK + + R R + G Sbjct: 1 MNSNMLQILVLLGVAVFLILRLRSVLGTREGFEKKPVPLDGPERDVTPR--RDFEVIEGG 58 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D + P G+ K + + F+ +FL A+ +YE I+ SF G + Sbjct: 59 PDTDITDHV----PDGSDSAKALAAMKMAEPGFNVTEFLGGAKGAYEWILMSFENGDMDD 114 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 ++ + + + F++ + R V++ VG+ + ++ A+ + +T +T+R VG+ Sbjct: 115 VQGFLSEELSEAFSEVIEQRNEQGLTVEAEFVGVRETTLVEAAFDRDTREGEVTVRFVGE 174 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + + ++ DP + D+WTF R + +PNW L++T Sbjct: 175 LTFVVRNAEGEIVEGDPTEIKRQKDVWTFARVMGSDDPNWRLVAT 219 >gi|319403587|emb|CBI77169.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 230 Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 67/208 (32%), Positives = 116/208 (55%), Gaps = 4/208 (1%) Query: 26 QLRGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIG 81 QLR VLGK+ G EKP +SG K D+ + +K + I+ + G Sbjct: 20 QLRNVLGKRIGFEKPPFDSYSGYTKKPVEVEKNDKIVSLPDQSSSQKSDFSEIDAIASEG 79 Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 ++LN +R I F P+ F+N + YE I+ +F +G + +++ + S V++ F ++ Sbjct: 80 SKLNSGLRSIRQFDPSFSPQFFVNGVQIVYEIIMTAFAQGDRNQLKEHLSSDVFESFCEA 139 Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201 + R+ N + ++ + VGI ++ I A +++ ++T+RIV + ISA+Y++ I +PE Sbjct: 140 IELREKNNERIQFTFVGISKIEFIAAEMQKEEAFLTVRIVSEIISATYNEQEECIEGNPE 199 Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTK 229 ++ DIWTFVRNI NPNW L +T+ Sbjct: 200 AIIEIRDIWTFVRNITSKNPNWKLFATE 227 >gi|315122039|ref|YP_004062528.1| hypothetical protein CKC_01445 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495441|gb|ADR52040.1| hypothetical protein CKC_01445 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 231 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 154/231 (66%), Positives = 182/231 (78%), Gaps = 4/231 (1%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYV----FSKRDERGIIT 61 M GDFLILL FI FV L+LR LGK+TG+EKP SGF + K D +++ Sbjct: 1 MYLGDFLILLCFFIAVFVILKLRSALGKRTGHEKPLSGFSPEQRKKSIFSPKGDGWNVVS 60 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 L KGKK+D LDSIN LFP+GTRLNKV RDIVS+Y+ FDPKDFLN R+SY IVDSFFEG Sbjct: 61 LNKGKKEDVLDSINGLFPVGTRLNKVFRDIVSIYSGFDPKDFLNGVRDSYGVIVDSFFEG 120 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 + IEKL+DS+VYQDF DSL +KS+EK +KSSLVG+DD+KI+NAS+E N +YIT RIV Sbjct: 121 NILKIEKLIDSKVYQDFADSLLIQKSSEKVIKSSLVGLDDLKIVNASVEGNNIYITTRIV 180 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 GQFISASYDK+N LI+ DPEIFGKV+D+WTFVRNI SNPNW+LISTK GE Sbjct: 181 GQFISASYDKNNALIAGDPEIFGKVVDVWTFVRNISSSNPNWILISTKPGE 231 >gi|83950785|ref|ZP_00959518.1| transporter, Tim44 family protein [Roseovarius nubinhibens ISM] gi|83838684|gb|EAP77980.1| transporter, Tim44 family protein [Roseovarius nubinhibens ISM] Length = 214 Score = 245 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 11/221 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 +L+ A I F+ L+LR VLG + G E P + + +G + G D Sbjct: 1 MLQLLVLAGIAIFLLLRLRSVLGTRDGFEPP-----RSELPGAPDRRQGFEVIEGGPDLD 55 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 D + P + + ++ + F +FL+ +R +YE I+ SF GK+ I Sbjct: 56 ITDHV----PEDSDAAAALAEMKRIEPSFSVSEFLSGSRQAYEWILMSFENGKLDEIVPF 111 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISA 187 + V++ F + R+ V++ G+ D+ +I+A++++ T IT++ +G+ S Sbjct: 112 LSPDVHEAFAQVIDARQEKNLTVEAEFYGVRDVTLIDAALDDTTKAAEITVKFLGELSSV 171 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 ++ +I P + D WTF R + +PNW L++T Sbjct: 172 VRNEQGEIIEGTPGEPKRQKDTWTFERVMGSDDPNWRLVAT 212 >gi|288959728|ref|YP_003450069.1| mitochondrial import inner membrane translocase [Azospirillum sp. B510] gi|288912036|dbj|BAI73525.1| mitochondrial import inner membrane translocase [Azospirillum sp. B510] Length = 231 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 106/224 (47%), Gaps = 2/224 (0%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 I++FA I F+ +LR VLG++TG E+ FS +K D + + D Sbjct: 8 IEIVIFAMIAAFLVYRLRSVLGRRTGEERQRPNPFSAAPGAAKPDNVVSLPQRNQPRPDA 67 Query: 71 LDSINELFP-IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + + L + I + FD K FL+ A+ ++ IVD+F G + L Sbjct: 68 APGQDVMASDEPLSLAASIDQIRAADPTFDEKHFLDGAKAAFAMIVDAFARGDTATLRPL 127 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE-ENTVYITIRIVGQFISAS 188 + VY F + R++ + ++ + + + +++ A ++ T +T+R+V ++ Sbjct: 128 LADDVYDGFARVIRDRQAAGEQHETRIEQVREAEVVEAKLDAGRTARVTVRLVSDQVNVV 187 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D++ ++ DP+ + D+WTF R++ +PNW L+ + + Sbjct: 188 RDRNGAVVDGDPKALVENTDVWTFARDLRSRDPNWALVEVRPVQ 231 >gi|83594937|ref|YP_428689.1| hypothetical protein Rru_A3608 [Rhodospirillum rubrum ATCC 11170] gi|83577851|gb|ABC24402.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 219 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 114/222 (51%), Gaps = 11/222 (4%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 I+ FA I F+ L+LR VLG++TG E+ F+ + + +I L K Sbjct: 8 IDIIFFAMIAAFLVLRLRSVLGRRTGEEQRRPDPFAQ----PESAQDNVIDLSGRK---- 59 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 P L + I F P+ FL A+ ++E I+ ++ +G ++ L+ Sbjct: 60 ---AVAGRPGDGTLAGGLTQIQLTDPSFSPEGFLIGAKAAFEMILMAYAKGDKAVLKPLL 116 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 V+Q+F+ ++ R+ ++ +++ LVG ++I+ A ++ +T++ V + +++ D Sbjct: 117 AGEVFQNFSRAIDEREQADETMETDLVGFKSVEILRAGMDGQDALVTVKFVTEQVNSVRD 176 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 K + ++ +P +V DIWTF R+ ++PNW LI+T++ E Sbjct: 177 KSDTVVDGNPNQVEEVTDIWTFRRDTVSNDPNWDLIATQVPE 218 >gi|319898295|ref|YP_004158388.1| hypothetical protein BARCL_0116 [Bartonella clarridgeiae 73] gi|319402259|emb|CBI75797.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 230 Score = 242 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 111/206 (53%), Gaps = 4/206 (1%) Query: 28 RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83 R VLGK+ G EKP +SG + D + +K + I+ + P G+ Sbjct: 22 RNVLGKRIGFEKPPFDSYSGYPKKQIEVETTDNIVSLPDQSSSQKSDFSEIDAIAPEGSE 81 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 LN +R I F P+ F+N + YE I+ +F +G +++ + S V++ F ++ Sbjct: 82 LNVSLRTIRQFDPSFSPRFFMNGVQIVYEMIMTAFAQGDRVKLKEHLSSDVFESFCAAIE 141 Query: 144 TRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203 R+ N + ++ + VGI+ ++ I A +++ ++T+RIV + ISA+Y++ I +PE Sbjct: 142 QREKNNERIQFTFVGINRIEFIAAEMQKKEAFLTVRIVSEMISATYNEQEECIDGNPEAI 201 Query: 204 GKVIDIWTFVRNIPPSNPNWVLISTK 229 ++ DIWTFVRN +PNW L +T+ Sbjct: 202 IEIRDIWTFVRNTTSQSPNWKLFATE 227 >gi|332186336|ref|ZP_08388081.1| tim44-like domain protein [Sphingomonas sp. S17] gi|332013704|gb|EGI55764.1| tim44-like domain protein [Sphingomonas sp. S17] Length = 257 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 107/222 (48%), Gaps = 7/222 (3%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F ++L A + F+ L+L VLGK+TG+E+ S D + L + + Sbjct: 43 LFYVVLLAMVALFLALRLYSVLGKRTGHEQQPLPR-------SADDRARPVVLPRAAEPA 95 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + I R + +R I++ FD FL A+++Y +++F++G A+ +L Sbjct: 96 QSPAPVANRNIDPRAEQGLRAIIAGEPGFDVNQFLGGAQSAYRMTLEAFWKGDEQALAEL 155 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 VD+ V F ++++ R+ + + + L+ +D KI+++ + IT+R ++ + Sbjct: 156 VDTDVLGAFAEAIAQRQEAGETLDNRLIRVDSAKIVDSQLAGRDARITVRFDADIVAVTR 215 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 D + +I+ + DIWTF R + +PNW L+ T Sbjct: 216 DAEGQVIAGSLSDAVETHDIWTFARTLKSGDPNWKLVDTDEA 257 >gi|319405014|emb|CBI78623.1| Tim44 domain protein [Bartonella sp. AR 15-3] Length = 230 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 68/206 (33%), Positives = 115/206 (55%), Gaps = 4/206 (1%) Query: 28 RGVLGKKTGNEKPFSGFFS--GKYVFSKRDERGIITLGKGK--KKDNLDSINELFPIGTR 83 R VLGK+ G EKP +S K + I++L KK+N IN + P + Sbjct: 22 RNVLGKRIGFEKPPFDSYSKHSKKQIERETSDNIVSLPDQSSSKKNNFSEINTIAPEKSA 81 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 LN +R I + F P+ F+N + YE I+ +F +G +++ + S V++ F +++ Sbjct: 82 LNSGLRAISLADSSFSPQFFINGVQIVYEIIMTAFAQGNRDQLKEHLSSDVFESFCEAIE 141 Query: 144 TRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203 R+ N + ++ + VGI+ ++ I A +++ ++T+RIV + ISA+Y++ I DPE Sbjct: 142 QREKNNERIQFTFVGINKIEFIAAEMQKEEAFLTVRIVSEIISATYNEREEYIDGDPEAI 201 Query: 204 GKVIDIWTFVRNIPPSNPNWVLISTK 229 ++ DIWTFVRN NPNW L +T+ Sbjct: 202 IEIRDIWTFVRNTTSKNPNWKLFATE 227 >gi|154251701|ref|YP_001412525.1| import inner membrane translocase subunit Tim44 [Parvibaculum lavamentivorans DS-1] gi|154155651|gb|ABS62868.1| import inner membrane translocase subunit Tim44 [Parvibaculum lavamentivorans DS-1] Length = 247 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 60/231 (25%), Positives = 103/231 (44%), Gaps = 25/231 (10%) Query: 23 VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS--------- 73 VFL+LR VLG++TG+E+P +S ++TL K + D S Sbjct: 19 VFLKLRSVLGRRTGHERPPYDPYSENPAPG---NDKVVTLPKRGRTDAPASGARDRVIDA 75 Query: 74 -------------INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 + G+ L + I FD + FL+ AR +YE IV +F Sbjct: 76 AGDPFANAGARFRWRGVTEEGSPLAGALDAIADADRTFDTESFLSGARMAYEMIVTAFAA 135 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 G ++ L+ VY F ++S R+ + S +GID I S++ +T+ Sbjct: 136 GDRATLKPLLSDDVYASFEGAISAREKAGLQIDQSFIGIDKAAITGGSLDGTRARLTVSF 195 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + S++ + D +++ DP ++ D+WTF R++ +PNW L++T Sbjct: 196 RSELTSSTKNSDGVVVEGDPVTVREITDVWTFERDLRNRDPNWKLVATGAA 246 >gi|85709415|ref|ZP_01040480.1| hypothetical protein NAP1_11058 [Erythrobacter sp. NAP1] gi|85688125|gb|EAQ28129.1| hypothetical protein NAP1_11058 [Erythrobacter sp. NAP1] Length = 219 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 110/222 (49%), Gaps = 4/222 (1%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 I++ A I F+ L+L VLG++ +E+ ++ + + G+ + Sbjct: 2 ILEIVILAMIAAFLGLRLYSVLGRRAEHEEESVP---QRFDAGDKPQAQPPIAGQPAQPA 58 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 SI EL + + + +R+I S FD F++ A+ +YE +++ F+EG + +L Sbjct: 59 PQRSI-ELEGVMPAVERGVREIASADRSFDIGQFMDGAKGAYEMVLEGFWEGDKDTLREL 117 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 D VY F+ ++ R+ + + L+ I++ +I +AS++ I + V + + Sbjct: 118 CDDDVYAGFSAAIDAREEAGHTLDNKLIRIEETRIHSASMDGRMARIAVLFVADIAAVTR 177 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 DKD ++++ + + D+WTF RNI +PNWVL T G Sbjct: 178 DKDGVVVAGSLDDAIESRDVWTFSRNIGSRDPNWVLDETDEG 219 >gi|119385510|ref|YP_916566.1| import inner membrane translocase, subunit Tim44 [Paracoccus denitrificans PD1222] gi|119375277|gb|ABL70870.1| import inner membrane translocase, subunit Tim44 [Paracoccus denitrificans PD1222] Length = 218 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M + +L+ A I F+ L+LRGVLG + G E P + + +R + G Sbjct: 1 MSNPLLQLLVLAAIAVFLILRLRGVLGTRDGFESPR--------IPEEPVQRRRFDVIDG 52 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + I + G+ K + ++ + DF FL+ A+++YE I+ +F G + Sbjct: 53 TAEAGDSDITDHAEPGSPAAKALAEMKRIEPDFAVGPFLSGAKSAYEMILMAFERGDLSE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQ 183 + + V + F + RK+ ++ +G + + A T +++R VG+ Sbjct: 113 VRGFLAPPVAEAFESVIEDRKARNLTTEAQFLGTRETALAGAEFTPATGMAELSVRFVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 I A+ D D +I DP+ K D WTF R + +PNW L++T Sbjct: 173 MIVATRDADGNVIEGDPKAARKQRDTWTFARRMGQDDPNWQLVAT 217 >gi|21328722|gb|AAM48728.1| conserved hypothetical protein [uncultured marine proteobacterium] Length = 216 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 102/221 (46%), Gaps = 11/221 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 +L A I ++ L+LRGVLG + G+E P + + D + + G +D Sbjct: 3 IIQLLALAGIAIYLILKLRGVLGTRDGHEGPRANIVARAD-----DRPKLEVIDGGPDQD 57 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 D E + + + + F +FL ++++YE I+ +F G + +++ Sbjct: 58 ITDHAAE----DSDAARALLGMKHAEPSFSVTEFLYGSKSAYEMILMAFENGDLGSVKAF 113 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISA 187 ++ VY F + RK+ ++++ +G+ D ++ A+ + T I +R + + S Sbjct: 114 LNQDVYDAFASVVEARKAQGLSIEAEFIGVRDTGLMGATFDPKTNAAEIDVRFICELTSV 173 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + D +I + + D+WTF R + +PNW LI+T Sbjct: 174 LRNSDGDIIEGNETEVKRQRDVWTFGRTMGADDPNWQLIAT 214 >gi|103487499|ref|YP_617060.1| import inner membrane translocase, subunit Tim44 [Sphingopyxis alaskensis RB2256] gi|98977576|gb|ABF53727.1| import inner membrane translocase, subunit Tim44 [Sphingopyxis alaskensis RB2256] Length = 221 Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 7/223 (3%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 F I+L A I F+ ++L VLGK+TG+E+ R I L G+ Sbjct: 4 FSIVLLAMIAAFLGMRLYSVLGKRTGHEQEPVLPRRDD-----RSAPAPIRLDDGETSAI 58 Query: 71 LDSINELFPI--GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 + S + + +R +++ +FD F+ AR +Y I+++F++G + Sbjct: 59 VTSATDTAGLVYEPSAEAGLRQLLANDRNFDAGRFMEGARAAYRMILEAFWKGDRETLRD 118 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L D Y F +++ R++ + +++ L+ ID KI A + IT+R + + Sbjct: 119 LCDDDSYDAFVEAIDAREARGETLENRLIRIDSAKITAAELNRGEARITVRYHADISAIT 178 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 D D LI+ + D+WTF R I ++PNW+L + Sbjct: 179 RDADGKLIAGSMSDAAQTDDLWTFRRQIGSNDPNWLLDEAESA 221 >gi|114769764|ref|ZP_01447374.1| transporter, Tim44 family protein [alpha proteobacterium HTCC2255] gi|114549469|gb|EAU52351.1| transporter, Tim44 family protein [alpha proteobacterium HTCC2255] Length = 218 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 11/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M F +++ I FV L+LR VLG ++G E + + + +E Sbjct: 1 MSDPMFQLVILGVIALFVILRLRSVLGTRSGFEPTNVPKPTFQKEKTPTEEN-------- 52 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 I + + + K + + ++F +F+ A +YE I+ +F EG Sbjct: 53 -DNKIDRDIADYVSVDSPSGKALSQMKKAESNFLVTEFIQGAGQAYEMILIAFEEGDRDG 111 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQ 183 + + VY F ++ R+ + N+ ++ +G+ ++K+ +A + IT+ +V + Sbjct: 112 LRPFLADDVYDSFESVITEREKAQLNIDATFIGLREIKLTSAEYDWRAKEGEITLSLVAE 171 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + + ++ +I D K D WTF R + NPNW L++T Sbjct: 172 LTTVVKNINDEIIEGDKNKIKKQKDTWTFSRIMGNDNPNWTLVAT 216 >gi|161170260|gb|ABX59230.1| uncharacterized protein conserved in bacteria [uncultured marine bacterium EB000_55B11] gi|297183789|gb|ADI19912.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 218 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 11/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M F +++ I FV L+LR VLG ++G E + + + +E Sbjct: 1 MSDPMFQLVILGVIALFVILRLRSVLGTRSGFEPTNVPKPTFQKEKTPTEEN-------- 52 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 I + + + K + + ++F +F+ A +YE I+ +F EG Sbjct: 53 -DNKIDRDIADYVSVDSSSGKALSQMKKAESNFLVTEFIQGAGQAYEMILIAFEEGDRDG 111 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQ 183 + + VY F ++ R+ + N+ ++ +G+ ++K+ +A + IT+ +V + Sbjct: 112 LRPFLADDVYDSFESVITEREKAQLNIDATFIGLREIKLTSAEYDWRAKEGEITLSLVAE 171 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + + ++ +I D K D WTF R + NPNW L++T Sbjct: 172 LTTVVKNINDEIIEGDKNKIKKQKDTWTFSRIMGNDNPNWTLVAT 216 >gi|94498195|ref|ZP_01304756.1| import inner membrane translocase, subunit Tim44 [Sphingomonas sp. SKA58] gi|94422325|gb|EAT07365.1| import inner membrane translocase, subunit Tim44 [Sphingomonas sp. SKA58] Length = 217 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 109/222 (49%), Gaps = 5/222 (2%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 ++I++ A I F+ L+L VLGK+TG+E+ + + + G G G D Sbjct: 1 MYVIVILAMIAGFLALRLYSVLGKRTGHEQEPALRPAEDRAKVTVLQPGPTNHGGG---D 57 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + L G +R +++ +FD F+ AR++Y+ ++++F+ G + L Sbjct: 58 TVRLAEGLIAPGAET--GVRTLIATDRNFDVPQFVEGARSAYKMVLEAFWRGDREELAWL 115 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 D+ V F D+++ R+++ + + LV I+ +II A++ + T I +R + + Sbjct: 116 CDADVLASFEDAIAAREADGHVLDNRLVRIEKAQIIEATVRDGTAEIAMRFEADIAAVTR 175 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 D+D +I+ DIWTF R+I ++PNW L T Sbjct: 176 DRDGNVIAGSMTDAIDTKDIWTFTRDIRSADPNWKLSETDEA 217 >gi|296283090|ref|ZP_06861088.1| hypothetical protein CbatJ_05690 [Citromicrobium bathyomarinum JL354] Length = 220 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 105/222 (47%), Gaps = 3/222 (1%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 + I++ A I F+ L+L VLG++ +E+ + T + Sbjct: 2 IYEIVILAMIAVFLGLRLYSVLGRRAEHEEEPVPHRFDAKDKAGLAAAPQTTQAPPRAVT 61 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 ++ ++ P+ + + ++ I++ FD FL A+ +Y I++++++G + L Sbjct: 62 EQEAKPDVLPV---VERGVQSIIAADRGFDITSFLEGAKGAYGMILEAYWKGDKETLRDL 118 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 D VYQ F ++ R+ + + + L+ I+D I +A +E IT+R V + ++ Sbjct: 119 CDESVYQGFAQAIDAREEAGETLDNRLIRIEDATIRDAELERKEARITVRFVADIAAVTH 178 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 D+D +++ + + DIWTF R + P+W L+ T G Sbjct: 179 DRDGNMVAGSLDDAIESRDIWTFARRVDSRTPDWQLVETDEG 220 >gi|84514927|ref|ZP_01002290.1| hypothetical protein SKA53_11923 [Loktanella vestfoldensis SKA53] gi|84511086|gb|EAQ07540.1| hypothetical protein SKA53_11923 [Loktanella vestfoldensis SKA53] Length = 211 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 56/216 (25%), Positives = 99/216 (45%), Gaps = 10/216 (4%) Query: 15 LFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSI 74 + A I F+ L+LRGVLG + G EKP + + R + + G D D + Sbjct: 2 VLAGIAVFLILRLRGVLGTREGFEKPAVT----RQETTPRRKHDFDVIEGGPDLDITDHV 57 Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 K + + V DF+ +FL AR +YE I+ +F + +I + V Sbjct: 58 QADS----AAAKALAAMKRVDPDFNVTEFLGGARGAYEMILMAFENSDLDSIVPFISHDV 113 Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISASYDKD 192 Y+ F + R+ V +S +GI DM + +A +E T +++R + S + + Sbjct: 114 YEAFASVVDDRQRQGLTVTASFIGISDMTLAHAEFDEATKEGEVSVRFKSEMTSVVRNAE 173 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 ++ + +++D WTF R + +PNW L++T Sbjct: 174 GEVVEGSTKEIKRLVDTWTFARKMDAGDPNWKLVAT 209 >gi|323135818|ref|ZP_08070901.1| import inner membrane translocase subunit Tim44 [Methylocystis sp. ATCC 49242] gi|322398909|gb|EFY01428.1| import inner membrane translocase subunit Tim44 [Methylocystis sp. ATCC 49242] Length = 233 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 102/230 (44%), Gaps = 6/230 (2%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFS----KRDERGIITL 62 + D +++FA + FV +LR VLG + + P F + + Sbjct: 6 EPFDPSLVVFAALAVFVIWKLRSVLGVRVDRDAPPPAQFQPRRPSPAGATPLPGAAPLDD 65 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 G +++ S + G + I + FD + FL+ AR +Y+ IV +F G Sbjct: 66 GAAARRNVPASWEGVAEKGGAAASGLDAIAAADPRFDGQAFLDGARRAYDMIVSAFARGD 125 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + L+ V+ F ++ R+ N + ++++++ ID + +A IT+R Sbjct: 126 RDQLRPLLSKEVFDGFAAEIARREENGETMETAVIAIDSALVESARAAPRLNEITVRFAT 185 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + ++ +K+ I V+++WTF R+ S+PNW L++T+ E Sbjct: 186 RLMNLRRNKEGETIEGGHT--IPVVELWTFARDPRASDPNWKLVATRPAE 233 >gi|307294078|ref|ZP_07573922.1| import inner membrane translocase subunit Tim44 [Sphingobium chlorophenolicum L-1] gi|306880229|gb|EFN11446.1| import inner membrane translocase subunit Tim44 [Sphingobium chlorophenolicum L-1] Length = 218 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 111/222 (50%), Gaps = 5/222 (2%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 ++I++ A I F+ L+L VLGK+TG+E+ + + + + +T G D Sbjct: 1 MYVIVILAMIAGFLALRLYSVLGKRTGHEQEPALRPAEERAKVTIVQPRPVTEMAG---D 57 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 ++ + L G +R +++ +FD F+ A+++Y ++++F+ G +E L Sbjct: 58 SVRLADGLIAPGGE--AGVRALIAADRNFDVPQFVEGAKSAYRMVLEAFWRGDRQELEWL 115 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 D+ V F D+++ R++ + + LV I+ ++I++A + I++R + + Sbjct: 116 CDADVLASFQDAITAREAEGHVLDNRLVRIEKVQIVDAGVTGRMAEISLRFEADIAAVTR 175 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 D+D +++ DIWTF R++ ++PNW L T Sbjct: 176 DRDGNVVAGSLTDAVGTNDIWTFTRDLRSTDPNWKLSETDEA 217 >gi|89052682|ref|YP_508133.1| import inner membrane translocase, subunit Tim44 [Jannaschia sp. CCS1] gi|88862231|gb|ABD53108.1| import inner membrane translocase subunit Tim44 [Jannaschia sp. CCS1] Length = 235 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 10/215 (4%) Query: 17 AFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINE 76 A I F+ L+LR VLG + G EKP S + R + G D L + Sbjct: 28 AGIAIFLILRLRSVLGTRDGFEKPPVAPGSSRRDV----RRDFEVIEGGPDDDIL----D 79 Query: 77 LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136 G+ K + + F +FL AR +YE I+ +F G V + + V + Sbjct: 80 HVDDGSDSAKALAAMKMAEPGFRVGEFLGGARQAYEMILMAFERGDVDGLRPFLADDVLE 139 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYDKDNL 194 F + R ++++ VG+ ++ + A+ + +T+R +G+ S + D Sbjct: 140 TFETVIDQRNEQGLSIEAEFVGVREITLQEATFDRSAGVGEVTVRFIGELTSVVRNADGE 199 Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 +I D + D+WTF R + +PNW L++T Sbjct: 200 IIEGDATEIKRQRDVWTFARKMGADDPNWALVATD 234 >gi|87198608|ref|YP_495865.1| import inner membrane translocase, subunit Tim44 [Novosphingobium aromaticivorans DSM 12444] gi|87134289|gb|ABD25031.1| import inner membrane translocase, subunit Tim44 [Novosphingobium aromaticivorans DSM 12444] Length = 247 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 104/229 (45%), Gaps = 7/229 (3%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKK-TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 I++ A I F+ L+L VLG++ +E+P +K + G + + + Sbjct: 19 IVQIVILAMIAAFLGLRLYSVLGRRPERDEEPMRRRIEQPDPSAKPHQPGSMGNARSAET 78 Query: 69 DNLDS------INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 L E +R I++ FD FL A+ +Y I+++F+ G Sbjct: 79 GALAPRPRELAAPEAQTFDNSAEAGVRAIIAADRRFDVAQFLAGAKGAYGMILEAFWRGD 138 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + +L D+ VY+ F ++ R + + + + L+ I++ +II ASIE T I +R + Sbjct: 139 KEELAQLCDADVYEGFASAIDARANAGETIDARLIRIEEARIIGASIEGTTARIAVRFLA 198 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 S + + + +++ + D+WTF R++ +P+W+L T Sbjct: 199 DIASVTRNAEGHVVAGSLDDAIDARDLWTFRRDLTSRDPDWLLDETDEA 247 >gi|148259158|ref|YP_001233285.1| import inner membrane translocase, subunit Tim44 [Acidiphilium cryptum JF-5] gi|326402311|ref|YP_004282392.1| putative transporter [Acidiphilium multivorum AIU301] gi|146400839|gb|ABQ29366.1| import inner membrane translocase, subunit Tim44 [Acidiphilium cryptum JF-5] gi|325049172|dbj|BAJ79510.1| putative transporter [Acidiphilium multivorum AIU301] Length = 221 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 6/221 (2%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 I+L A + F+ L+LR VLG++TG E+P + + G + G + + Sbjct: 7 VDIVLLALVAGFLVLRLRSVLGRRTGYERPPMPEPTAAGGMQRP--GGPVIEGVAEPPRS 64 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + T + + + I FDP FL+ A S+ IV +F G + A+ L+ Sbjct: 65 TRPVPAPH---TVVGQTLARIAQAERGFDPARFLDGAEASFRRIVLAFAAGDLAALRPLL 121 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 V+ F +++ R + + +V I + I A + I +R V + + D Sbjct: 122 TPGVFATFEQAVAQRAEAGETQHTEIVRIVEATIDEAELLGGEAVIVVRFVSDQQNYTRD 181 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + +I+ E +++D+W+F +++ ++P W L + + G Sbjct: 182 RQGQVIAG-TEAMTEIVDLWSFEKSLGAADPTWRLAAARSG 221 >gi|296444992|ref|ZP_06886953.1| import inner membrane translocase subunit Tim44 [Methylosinus trichosporium OB3b] gi|296257413|gb|EFH04479.1| import inner membrane translocase subunit Tim44 [Methylosinus trichosporium OB3b] Length = 229 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 59/228 (25%), Positives = 107/228 (46%), Gaps = 9/228 (3%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK-- 64 ++ D IL+ A + FV +L VLG +T E + V S G++ Sbjct: 5 EAFDPSILVLAALAAFVVWKLWSVLGVRTDRE-----NSAAGRVPSPGRRFGVVPPPAST 59 Query: 65 --GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 + + L G++ + + + FD K+FL A+ +YE +V+SF +G Sbjct: 60 GFAAPPQDQSRWDGLAEPGSKGWAGLDALAAADRGFDAKNFLEGAKKAYELVVESFAKGD 119 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + L+ + VY F +++ R+ ++ ++ +V I+ + +A +E + IR V Sbjct: 120 REMLRNLLANDVYDSFAKAIAAREQRGESAEARVVAIETASVEDAQVERGRAQVAIRFVV 179 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + ISA D +I D E + D+WTF R+I +PNW L++T+ Sbjct: 180 KLISARRDSAGEVIEGDVERPIDITDLWTFARDISSRDPNWKLVATET 227 >gi|85374926|ref|YP_458988.1| hypothetical protein ELI_10495 [Erythrobacter litoralis HTCC2594] gi|84788009|gb|ABC64191.1| hypothetical protein ELI_10495 [Erythrobacter litoralis HTCC2594] Length = 215 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 105/223 (47%), Gaps = 10/223 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPF-SGFFSGKYVFSKRDERGIITLGKGKKK 68 F I++ A I F+ ++L VLG++ E+ + + + + + + Sbjct: 2 IFEIVILAMIAAFLGMRLYSVLGQRAEQEEEVIPNRYDAGDQPQQAAPKPATQVVELQPN 61 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 NL + + +R I + FD FL A+ +Y +++++++G + + Sbjct: 62 PNLHP---------SVEQGVRAIAAADRGFDVSSFLEGAKGAYGMVLEAYWKGDKETLRE 112 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L D VY F ++ R+ + + ++L+ I+D I +A ++ T +T+R V + + Sbjct: 113 LCDDDVYASFAGAIDAREEAGEALDNTLIRIEDAVIRDAEMDGRTARVTVRFVADIAAVT 172 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 DKD +I+ + + DIWTF RN+ + P+WVL T G Sbjct: 173 RDKDGNVIAGSLDDAIESRDIWTFSRNVDAAGPDWVLDETDEG 215 >gi|46204686|ref|ZP_00049618.2| COG4395: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 223 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 10/222 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSG---KYVFSKRDERGIITL 62 DS D L+F + FV +LR VLG+KTG E+ + + + ++ L Sbjct: 2 QDSFDVTTLIFLALAVFVIWRLRSVLGQKTGAERSPFRPVERNRTEPPAGRAEGDNVVRL 61 Query: 63 GKGKKKDNL-------DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115 + + G+ + + + +V V FDP+ FL A+ +YE IV Sbjct: 62 PGADRAQAAAAVQTVTRDWRGIAEPGSAVARGLEQVVQVEPGFDPRTFLEGAKGAYEIIV 121 Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY 175 +F +G + L+ VY F+ +S R+ + V+++ + ID +I+ ++ Sbjct: 122 TAFAQGDRKTLRPLLSREVYDGFDRVISERERRRETVETTFISIDKAEIVAIEVKNRAAQ 181 Query: 176 ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217 IT+R + I+A+ D D +I + E +V D+WTF R + Sbjct: 182 ITVRFLSNLITATRDADGKVIDGNAETGVEVPDVWTFARTLG 223 >gi|310817171|ref|YP_003965135.1| transporter, Tim44 family protein [Ketogulonicigenium vulgare Y25] gi|308755906|gb|ADO43835.1| transporter, Tim44 family protein [Ketogulonicigenium vulgare Y25] Length = 219 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 10/205 (4%) Query: 26 QLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLN 85 +LR VLG + G EKP + R + + G +D +D + P G+ Sbjct: 21 RLRSVLGSRDGFEKPIAQV----PPEEARKRPTLDVIEGGPDRDIVDHV----PEGSATA 72 Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145 ++ + F +FL+ +R +YE I+ +F G + + + V+ F ++ R Sbjct: 73 LIIGQMKKAEPSFSLSEFLSGSRGAYEMILMAFERGDIEPVRGFIAPEVFDAFAGVIADR 132 Query: 146 KSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQFISASYDKDNLLISSDPEIF 203 ++ V++ +GI D+ + +A+ + + +R V + S D D ++ P++ Sbjct: 133 QARGLKVEAHFIGIRDVGLDDAAFDPATGEAELVVRFVAEMTSVVRDADGTVVEGAPDVA 192 Query: 204 GKVIDIWTFVRNIPPSNPNWVLIST 228 + D+WTF R + S+PNW L++T Sbjct: 193 KRQKDVWTFARKMGASDPNWTLVAT 217 >gi|114328998|ref|YP_746155.1| transporter [Granulibacter bethesdensis CGDNIH1] gi|114317172|gb|ABI63232.1| transporter [Granulibacter bethesdensis CGDNIH1] Length = 231 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 99/222 (44%), Gaps = 5/222 (2%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 ++L I F+ L+LR VLG++ G E+P G+ G+ + Sbjct: 14 VDLVLLGMIAVFLVLRLRSVLGRRVGFERPEVPANQGQT---GNRIPGLPVRLRRPDAAV 70 Query: 71 LDSINELFP-IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 ++ + P + +V+ + V FD FLN A ++ IV ++ +G+ A+ L Sbjct: 71 AEARTYVLPDASSPTGQVLARMKEVDRSFDAVRFLNNAEQAFRVIVTAYAQGEREALRPL 130 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + + F ++ R+ + ++ + I D++I NA +E+ +TIR V + Sbjct: 131 LTEATFTIFCQAIDAREQDGARQQTEIQSIRDIRIENARLEQTQAALTIRFVSDQHNVML 190 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++ + E +++D+WTF R++ +P W L T Sbjct: 191 NRTGEPVEG-VEGLTEIVDVWTFERDLASRDPTWRLSGTDNA 231 >gi|148556731|ref|YP_001264313.1| import inner membrane translocase subunit Tim44 [Sphingomonas wittichii RW1] gi|148501921|gb|ABQ70175.1| import inner membrane translocase, subunit Tim44 [Sphingomonas wittichii RW1] Length = 226 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 11/229 (4%) Query: 5 KMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK 64 ++ I++ A + FV +L VLG++TG+E+ + + Sbjct: 6 RIGGPVTTIVILAMVFLFVAFRLWSVLGRRTGHEQ---------TIARPAEAAPAPIGAG 56 Query: 65 GKKKDNLDSINELFP--IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 +N + P + R +R I S FD FL AR++Y I+++++ G Sbjct: 57 RSLPENATPVLPAKPAVVEPRAEAGVRAIQSADGGFDAAQFLEGARSAYRMILEAYWRGD 116 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 A+ +L D VY+ F +++ R+ + + + LV I+ I A + T +T+R Sbjct: 117 EEALRRLTDDDVYEAFAAAITERREANEVLDNRLVSIESAVIEQARMNGQTANVTVRFDA 176 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + + D + +++ D+WTF R++ +PNW L+ T Sbjct: 177 DIAAVTRDGEGNVVAGSLTDAVPTHDVWTFSRHVRSDDPNWTLVETDEA 225 >gi|300024770|ref|YP_003757381.1| import inner membrane translocase subunit Tim44 [Hyphomicrobium denitrificans ATCC 51888] gi|299526591|gb|ADJ25060.1| import inner membrane translocase subunit Tim44 [Hyphomicrobium denitrificans ATCC 51888] Length = 251 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 112/246 (45%), Gaps = 23/246 (9%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTG-NEKPFSGFFSGKYVFSKR-----DERGIITL 62 D + L+ + ++LR VLG +T +E+ + + S+R +IT+ Sbjct: 5 FDLITLIALIVAVAAIIKLRSVLGHRTDEDEQRVERLRAREREASQRAGADAPSADVITM 64 Query: 63 GKGKKKDNL-------------DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN 109 + + IN + + + + +FDP+ F+ A Sbjct: 65 PRRDRDAAPAAPAAEAAGPSAETRINAYPVSNPDVTAGLLQVAKLDPEFDPESFVTGAGR 124 Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 +YE IV +F EG ++ L+ V+ F+ +++ R++ + + VGI I++A + Sbjct: 125 AYEMIVSAFAEGNRRMLKDLLSKDVFDGFSSAIADREARGEVLDQQFVGIKKADIVDAEV 184 Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP----SNPNWVL 225 + T +T+R + + ISA+ DK +I+ D + V DIW F R++ SNPNW L Sbjct: 185 KNGTAALTVRFISELISATRDKAGEVIAGDAQKIKDVTDIWIFSRDVSSAKALSNPNWRL 244 Query: 226 ISTKLG 231 ++T+ Sbjct: 245 VATQAP 250 >gi|294010816|ref|YP_003544276.1| hypothetical protein SJA_C1-08300 [Sphingobium japonicum UT26S] gi|292674146|dbj|BAI95664.1| conserved hypothetical protein [Sphingobium japonicum UT26S] Length = 218 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 108/222 (48%), Gaps = 5/222 (2%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 ++I++ A I F+ L+L VLGK+TG+E+ + + + + + G D Sbjct: 1 MYVIVILAMIAGFLALRLYSVLGKRTGHEQEPALRPAEERAKVTIVQPRPVPEMAG---D 57 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 ++ L G +R +++ FD F+ A+ +Y+ ++++F+ G +E L Sbjct: 58 SVRLSEGLIAPGGE--AGVRALIAADRSFDVPQFVEGAKAAYKMVLEAFWRGDRQELEWL 115 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 D+ V F ++++ R++ + + LV I+ ++I++A + I++R + + Sbjct: 116 CDADVLASFEEAIAAREAEGHVLDNRLVRIEKVQIVDAGVTGRMAEISLRFEADIAAVTR 175 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 D+D +++ DIWTF R++ ++PNW L T Sbjct: 176 DRDGNVVAGSLTDAVGTNDIWTFTRDLRSTDPNWKLSETDEA 217 >gi|83944953|ref|ZP_00957319.1| hypothetical protein OA2633_09999 [Oceanicaulis alexandrii HTCC2633] gi|83851735|gb|EAP89590.1| hypothetical protein OA2633_09999 [Oceanicaulis alexandrii HTCC2633] Length = 219 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 5/222 (2%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 IL FA + F+ ++L VLGK +G + +R E + + Sbjct: 3 ILQILFFAGLAVFLGVRLYMVLGKSSGR-----AAEDVEREQRERAEAAGMGAPPPSMRP 57 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 D + + I FDP +F AR +YE IV ++ +G A+E L Sbjct: 58 QADETPFAAQFAGPAGEGLMQIAQHDPAFDPDEFRKGARAAYEMIVLAYAKGDREALEPL 117 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + RV + ++ +++ R+ V + + I +I AS+ +N + I + S + Sbjct: 118 LTERVKKAYDQAIAAREEKNWTVTTEIDRIKSAEISEASLNDNRAKVKIAFSVELASETR 177 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + ++ D V +IW+F R++ NPNW L K Sbjct: 178 NAQGDVVEGDLTTLKTVDEIWSFERDVTSENPNWRLSGVKPA 219 >gi|326386373|ref|ZP_08207996.1| import inner membrane translocase, subunit Tim44 [Novosphingobium nitrogenifigens DSM 19370] gi|326209034|gb|EGD59828.1| import inner membrane translocase, subunit Tim44 [Novosphingobium nitrogenifigens DSM 19370] Length = 218 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 95/218 (43%), Gaps = 2/218 (0%) Query: 16 FAFITFFVFLQLRGVLGKK-TGNEKPFSGFFSGKYVFSK-RDERGIITLGKGKKKDNLDS 73 A I F+ L+L VLG++ G+++P + R + Sbjct: 1 MAMIALFLGLRLYAVLGRRAEGSDEPLRRRVEQPDPQAALRAMPSKLPEKPAMTGRPSLP 60 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 E +R I++ FD FL A+ +Y ++D+F+ G A+ +L + Sbjct: 61 TAEPSAFDAGAETGIRAIIAADRRFDVALFLTGAKAAYGMVLDAFWRGDKDALAQLCERS 120 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 VY+ F ++ RK + V + L+ +DD +I++A I +R V + + + + Sbjct: 121 VYESFAAAIDARKQAGETVDARLIRVDDARIVSADFNAPVARIAVRFVADVATVTRNTEG 180 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 +++ + + D+WTF R++ +P+W L T G Sbjct: 181 TVVAGSLDDAIESRDLWTFSRDLTSRDPDWQLDETDQG 218 >gi|294085200|ref|YP_003551960.1| hypothetical protein SAR116_1633 [Candidatus Puniceispirillum marinum IMCC1322] gi|292664775|gb|ADE39876.1| hypothetical protein SAR116_1633 [Candidatus Puniceispirillum marinum IMCC1322] Length = 212 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 103/224 (45%), Gaps = 16/224 (7%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 I++FA I + L+L+ VLG++TG E+P K ++ ++ K + Sbjct: 2 PYIDIIIFAVIAVLLVLRLKSVLGQRTGFEQPQD-----KKPMQAANDGDVVPFPSNKDE 56 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 G + + +F FL A ++E ++ ++ EG + +++ Sbjct: 57 -----------TGALNGHGIATLRKADRNFTEAAFLGGATQAFEMVLRAYAEGDLAQLKR 105 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L+ + Q F S+ R +N++++ L I + I+N ++ ++ +T+ + Sbjct: 106 LLGYDLLQSFTQSIQKRNANKESLTIDLENIKEASILNIAVVDSVAAVTVHFHSVQTRIA 165 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D D +I D +++DIWTF R++ ++PNW L+ T+ + Sbjct: 166 RDADENIIDEDESQSQEIVDIWTFERDLTLNDPNWKLVETETAD 209 >gi|149185516|ref|ZP_01863832.1| hypothetical protein ED21_20864 [Erythrobacter sp. SD-21] gi|148830736|gb|EDL49171.1| hypothetical protein ED21_20864 [Erythrobacter sp. SD-21] Length = 218 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 7/223 (3%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEK-PFSGFFSGKYVFSKRDERGIITLGKGKKK 68 + I++ A I F+ L+L VLG+++ +E+ P F ER + + Sbjct: 2 IYEIVILAAIAAFLGLRLYSVLGERSEHEEEPARHRFDAPDAVPPAAERPAAPARESVRL 61 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 ++D+ + +R I S FD FL A+ +Y I+++F++G + Sbjct: 62 RSVDN------ASSANENAIRAIASADPRFDLLAFLEGAKAAYGMILEAFWKGDKDTLRD 115 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L D VY F+ ++ R + +++++ LV I+D I +A ++ T I++ V S + Sbjct: 116 LTDDDVYAGFSGAIDARDTAGESLENRLVRIEDATIHSAELDNRTARISVLFVSDIASLT 175 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 DKD +I+ + + DIWTF RN+ +PNWVL T G Sbjct: 176 RDKDGNVIAGSLDDAVESRDIWTFTRNVDAMDPNWVLDETDQG 218 >gi|222474811|ref|YP_002563226.1| hypothetical protein AMF_080 [Anaplasma marginale str. Florida] gi|255002781|ref|ZP_05277745.1| hypothetical protein AmarPR_00408 [Anaplasma marginale str. Puerto Rico] gi|222418947|gb|ACM48970.1| Conserved hypothetical protein [Anaplasma marginale str. Florida] Length = 219 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 91/222 (40%), Gaps = 4/222 (1%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 G + ++AF+ F+F +L G LGK + S + + + G I + Sbjct: 2 GMVELAIYAFVAAFIFFRLYGSLGKASSVNFQPSAIYPEQAGGEQAASDGSIN----SQD 57 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 + S+ +++ V I F K F+ + ++EAIV + +G + Sbjct: 58 IPVSSVVADCASVEQISSVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGNAEFLSS 117 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L+ ++ F + RKS + +V I K+ +A ++ N+ IT++ V + I+ Sbjct: 118 LLSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVTEQINVV 177 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D ++ + D W F R+I S W L ST Sbjct: 178 RDAGGQVVDGSTSKVNTIEDTWKFARDITTSGRRWYLTSTSA 219 >gi|254994672|ref|ZP_05276862.1| hypothetical protein AmarM_00445 [Anaplasma marginale str. Mississippi] Length = 217 Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 4/221 (1%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 + ++AF+ F+F +L G LGK + S + + + G I + Sbjct: 1 MVELAIYAFVAAFIFFRLYGSLGKASSVNFQPSAIYPEQAGGEQAASDGSIN----SQDI 56 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + S+ ++ V I F K F+ + ++EAIV + +G + L Sbjct: 57 PVSSVVADCASVEQIASVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGNAEFLSSL 116 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + ++ F + RKS + +V I K+ +A ++ N+ IT++ V + I+ Sbjct: 117 LSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVTEQINVVR 176 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D ++ + D W F R+I S W L ST Sbjct: 177 DAGGQVVDGSTSKVNTIEDTWKFERDITTSGRRWYLTSTSA 217 >gi|73667391|ref|YP_303407.1| membrane translocase, subunit Tim44 [Ehrlichia canis str. Jake] gi|72394532|gb|AAZ68809.1| membrane translocase, subunit Tim44 [Ehrlichia canis str. Jake] Length = 212 Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 102/225 (45%), Gaps = 18/225 (8%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 + ++A + F+F +L LGK +G + I++ ++ Sbjct: 1 MVELAIYALLAAFIFFRLYNSLGKTSG--------------LQPNNHSQAISIVVEDTQE 46 Query: 70 NLDSINELFPIGTRLNK----VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D+ E+ + NK ++ I +F K F++ + ++E I+ +F EG VH Sbjct: 47 YDDAEIEIESVMDTCNKDEKSIINQIKKKDKEFSLKHFMDGSIKAFEIIIKAFNEGNVHI 106 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + L+D+ +Y F++ + RK + +V + KII + N YIT++ + + I Sbjct: 107 LSMLLDTNLYNSFSEEIENRKKLNHVYEDIIVSVTSHKIIKLDLSGNIAYITVKFITEQI 166 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + DKD+ +I K+ D+WTF ++I SN W L + + Sbjct: 167 NFVKDKDDNVIQGSTSKINKIEDVWTFRKDITLSNKKWYLNAIQS 211 >gi|56416441|ref|YP_153515.1| hypothetical protein AM113 [Anaplasma marginale str. St. Maries] gi|56387673|gb|AAV86260.1| hypothetical protein AM113 [Anaplasma marginale str. St. Maries] Length = 217 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 90/221 (40%), Gaps = 4/221 (1%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 + ++AF+ F+F +L G LGK + S + + + G I + Sbjct: 1 MVELAIYAFVAAFIFFRLYGSLGKASSVNFQPSAIYPEQAGGEQAASDGSIN----SQDI 56 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + S+ +++ V I F K F+ + ++EAIV + +G + L Sbjct: 57 PVSSVVADCASVEQISSVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGNAEFLSSL 116 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + ++ F + RKS + +V I K+ +A ++ N+ IT++ V + I+ Sbjct: 117 LSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVTEQINVVR 176 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D ++ + D W F R+I S W L ST Sbjct: 177 DAGGQVVDGSTSKVNTIEDTWKFERDITTSGRRWYLTSTSA 217 >gi|255003915|ref|ZP_05278716.1| hypothetical protein AmarV_00428 [Anaplasma marginale str. Virginia] Length = 217 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 90/221 (40%), Gaps = 4/221 (1%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 + ++AF+ F+F +L G LGK + S + + + G I + Sbjct: 1 MVELAIYAFVAAFIFFRLYGSLGKASSVNFQPSAIYPEQAGGEQAASDGSIN----SQDI 56 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + S+ +++ V I F K F+ + ++EAIV + +G + L Sbjct: 57 PVSSVVADCASVEQISSVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGNAEFLSSL 116 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + ++ F + RKS + +V I K+ +A ++ N+ IT++ V + I+ Sbjct: 117 LSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVTEQINVVR 176 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D ++ + D W F R+I S W L ST Sbjct: 177 DAGGQVVDGSTSKVNTIEDTWKFARDITTSGRRWYLTSTSA 217 >gi|42520013|ref|NP_965928.1| hypothetical protein WD0107 [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409750|gb|AAS13862.1| conserved domain protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 216 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 101/221 (45%), Gaps = 18/221 (8%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 ++++A + F+F +L LG+ N K + S+ E + + Sbjct: 1 MIELVIYALLAAFIFSRLYNSLGRSANLNLKKLTNVLD----VSRSREDVVENIEGYIDS 56 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 ++ +SI + + I+ DF F+ + ++E I+ F +G + ++ Sbjct: 57 NDENSIKVTY----------KQILKKNKDFSISHFIEGSSIAFELIIKCFNQGNLSQLKP 106 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L+D +Y +F + + RK + +S +V I KI+ + +N V+I + + + I+ Sbjct: 107 LLDKDLYDNFAEKIKHRK---EVHESIIVSIVSQKILEIKLVKNAVFIAVYFLSEQINFV 163 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + + +IS KV D+W F +N+ S+P+W+L+S Sbjct: 164 KNNEGDIISGSTSTINKVEDVWQFKKNVNSSDPSWLLVSIH 204 >gi|58696732|ref|ZP_00372276.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila simulans] gi|58698125|ref|ZP_00373048.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila ananassae] gi|225629991|ref|YP_002726782.1| hypothetical protein WRi_001450 [Wolbachia sp. wRi] gi|58535371|gb|EAL59447.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila ananassae] gi|58537084|gb|EAL60206.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila simulans] gi|225591972|gb|ACN94991.1| hypothetical protein WRi_001450 [Wolbachia sp. wRi] Length = 216 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 100/221 (45%), Gaps = 18/221 (8%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 ++++A + F+F +L LG+ N K + S+ E + + Sbjct: 1 MIELVIYALLAAFIFSRLYNSLGRSANLNLKKLTSVLD----VSRSREDVVENIEGYIDS 56 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 ++ +SI + I+ DF F+ + ++E I+ F +G + ++ Sbjct: 57 NDENSIKVTYE----------QILKKNKDFSISHFIEGSSIAFELIIKYFNQGNLSQLKP 106 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L+D +Y +F + + RK + +S +V I KI+ + +N V+I + + + I+ Sbjct: 107 LLDKDLYDNFAEKIKHRK---EVHESIIVSIVSQKILEIKLVKNVVFIAVYFLSEQINFV 163 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + + +IS KV D+W F +N+ S+P+W+L+S Sbjct: 164 KNNEGDIISGSTSTINKVEDVWQFKKNVNSSDPSWLLVSIH 204 >gi|197103473|ref|YP_002128850.1| hypothetical protein PHZ_c0007 [Phenylobacterium zucineum HLK1] gi|196476893|gb|ACG76421.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 205 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 88/223 (39%), Gaps = 23/223 (10%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 +++FA + V QL VLG++ G ++ E Sbjct: 4 LELIIFAGLAAIVLYQLYSVLGRRVG----------------RQPEDQAAAEPAQGSVRA 47 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 +D + E G L + + ++ FD FL A+ +YE IV +F +G ++ L+ Sbjct: 48 VDRMAEPADDGVAL-TGLAAVKALDPSFDVGHFLGGAKQAYEMIVRAFADGDRATLKNLL 106 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE-NTVYITIRIVGQFISASY 189 +V F ++ R++ + + A + + +T+R + +F S + Sbjct: 107 APQVLASFEAAIDQREAEGRTESVEFFHPPRADLEKADVTGADLGRVTVRFLAEFRSRTK 166 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + + + ++WTF RN+ +PNW+L+ E Sbjct: 167 GPEGEAVDD-----RRTAELWTFERNLKSRDPNWMLVHVDAAE 204 >gi|269959143|ref|YP_003328932.1| Tim44-like domain containing protein [Anaplasma centrale str. Israel] gi|269848974|gb|ACZ49618.1| Tim44-like domain containing protein [Anaplasma centrale str. Israel] Length = 217 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 95/221 (42%), Gaps = 4/221 (1%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 + ++AF+ F+F +L G LGK + S + G+ + G + + Sbjct: 1 MVELAIYAFVAAFIFFRLYGSLGKASSVNFQPSAIYPGQVSGEQAASDGSV----KPQDI 56 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 +DS+ +++ V I + DF K F+ + ++EAIV + +G + L Sbjct: 57 PVDSVVADSAPVDQISSVFEAIKARNKDFSVKHFIEGSAAAFEAIVSALNQGNTELLSSL 116 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 ++ +Y F + R+ + + +V I K+ NA +E N IT++ V + I+ Sbjct: 117 LNRHMYNSFVKEVERRRDAGRVHEDVVVSITSQKVTNAELEGNFATITVQFVTEQINVVR 176 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D + ++ + D W F R++ + W L ST Sbjct: 177 DVEGQVVDGSTSKVNVIEDTWKFERDVTAAGRRWYLASTSA 217 >gi|4098584|gb|AAD00329.1| unknown [Rhodobacter capsulatus] Length = 183 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 85/182 (46%), Gaps = 6/182 (3%) Query: 49 YVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR 108 R + G D +D + P G+ + + V F+ FL ++ Sbjct: 4 EAPGPRAADRFEVIEGGPDHDIIDHV----PEGSDAAVALAQMKRVEPTFNVGAFLQGSK 59 Query: 109 NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS 168 +YE I+ +F G + A+ + + V + F +++ R+ V++S +G+ ++ + AS Sbjct: 60 VAYEMILMAFERGDLSAVRRFLAPEVLEAFETAVADRQRQGLTVEASFLGLRELVLTEAS 119 Query: 169 IEE--NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 E +T+R G+ IS + D + ++ DP+ K D WTF R + S+PNW L+ Sbjct: 120 FNESSREAEVTVRFGGELISVARDANGQIVEGDPKAPRKQRDSWTFARVMGSSDPNWQLV 179 Query: 227 ST 228 +T Sbjct: 180 AT 181 >gi|225677153|ref|ZP_03788152.1| hypothetical protein WUni_006480 [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590820|gb|EEH12048.1| hypothetical protein WUni_006480 [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 216 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 100/221 (45%), Gaps = 18/221 (8%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 ++++A + F+F +L LG+ N K + S+ E + + Sbjct: 1 MIELVIYALLAAFIFSRLYNSLGRSANLNLKKLTNVLD----VSRSREDVVENIEGYIDS 56 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 ++ +SI + + I+ DF F+ + ++E I+ F +G + ++ Sbjct: 57 NDENSIKVTY----------KQILKKNKDFSISHFIEGSSIAFELIIKCFNQGNLSQLKP 106 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L+D +Y +F + + RK + +S +V I KI+ + +N V+I + + + I+ Sbjct: 107 LLDKDLYDNFAEKIKHRK---EVHESIIVSIVSQKILEIKLVKNAVFIAVYFLSEQINFV 163 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + +IS KV D+W F +N+ S+P+W+L+S Sbjct: 164 KNNKGDIISGSTSTINKVEDVWQFKKNVNSSDPSWLLVSIH 204 >gi|68171233|ref|ZP_00544637.1| Mitochondrial import inner membrane translocase, subunit Tim44 [Ehrlichia chaffeensis str. Sapulpa] gi|88658281|ref|YP_507053.1| tim44-like domain-containing protein [Ehrlichia chaffeensis str. Arkansas] gi|67999353|gb|EAM85998.1| Mitochondrial import inner membrane translocase, subunit Tim44 [Ehrlichia chaffeensis str. Sapulpa] gi|88599738|gb|ABD45207.1| tim44-like domain protein [Ehrlichia chaffeensis str. Arkansas] Length = 212 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 104/223 (46%), Gaps = 14/223 (6%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 + ++AF+ F+F +L LGK +G + + + I + ++ D Sbjct: 1 MVELAIYAFLAAFIFFRLYHSLGKTSGLQ------------SNSHSQTISIIMEDTQEHD 48 Query: 70 NLD-SINELFPIGTRLNK-VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 D I+ + I +K ++ I +F + F++ + ++E I+ +F EG +H + Sbjct: 49 TADIDIDSVMEICNENDKSIINHIKKKDKEFSLRHFMDGSIKAFEIIIKAFNEGNIHILS 108 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 L+D+ +Y F + + RK+ + + +V I KI S+ N YIT++ + + I+ Sbjct: 109 MLLDTNLYNSFVEEIENRKALGQLYEDIIVSITSHKITKLSLSGNIAYITVKFISEQINF 168 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 DKD+ ++ K+ D WTF ++ SN W L + + Sbjct: 169 VKDKDDNILQGSTSKINKIEDTWTFRKDTTLSNKKWYLSTIQS 211 >gi|329114333|ref|ZP_08243095.1| Import Inner Membrane Translocase Subunit [Acetobacter pomorum DM001] gi|326696409|gb|EGE48088.1| Import Inner Membrane Translocase Subunit [Acetobacter pomorum DM001] Length = 242 Score = 197 bits (502), Expect = 9e-49, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 102/225 (45%), Gaps = 12/225 (5%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 ++L A + F+ L+LR VLGK+ G +P + + R + GK ++ + Sbjct: 26 VDLVLLALVAAFLVLRLRSVLGKRVGI-QPVQVQLQVRPDAAPR-----VVEGKPEQAEA 79 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + P GTR+ ++ DI F P+ FLN A+ ++ +V ++ +G ++ ++ + Sbjct: 80 AAEFDIPAP-GTRVGTLLADIRQKDPSFTPQQFLNGAQTAFAQVVGAYAQGNLNVLKTYL 138 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE----ENTVYITIRIVGQFIS 186 V+ F ++ R + E+ ++ + I + I + + I +RIV IS Sbjct: 139 TPAVFSAFEAGITARTNAEETQRTDVKAIRSLAIEDVRLTPMEAGTAAAIDVRIVSDQIS 198 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 +K+ ++ + + D+WTF R + + W L + + Sbjct: 199 LVLNKEGQPVTG-TDAVTEFSDLWTFERLLDVNGSTWRLAAARSA 242 >gi|58617502|ref|YP_196701.1| hypothetical protein ERGA_CDS_07750 [Ehrlichia ruminantium str. Gardel] gi|58417114|emb|CAI28227.1| Hypothetical protein ERGA_CDS_07750 [Ehrlichia ruminantium str. Gardel] Length = 213 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 96/222 (43%), Gaps = 11/222 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 + ++AF+ F+F +L LG+ +G + + + + D Sbjct: 1 MVELAIYAFVAAFIFFRLYNSLGRTSGLQ--PNNHSQPVSILIQEDNNH--------DYT 50 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 ++D + + +M I +F K F++ + +++ I+ +F EG + + L Sbjct: 51 DIDIESVMESCDDNDQSIMNTIKRKDREFSLKYFMDGSMKAFDIIIKAFNEGNIQILCSL 110 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 +D +Y F + RK+ + + +V I KI + N +IT++ + + I+ Sbjct: 111 LDKDLYNSFLTEIEYRKNLGQVYEDVIVSIIYHKITKLKLSGNIAHITVKFISEQINFVK 170 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIP-PSNPNWVLISTKL 230 D++ ++ K+ D+WTF +++ ++ W L S + Sbjct: 171 DQEGNILQGSTSKINKIEDVWTFKKDMSLLTSKKWYLSSIQP 212 >gi|88607695|ref|YP_504724.1| Tim44-like domain-containing protein [Anaplasma phagocytophilum HZ] gi|88598758|gb|ABD44228.1| Tim44-like domain protein [Anaplasma phagocytophilum HZ] Length = 241 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 89/221 (40%), Gaps = 7/221 (3%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 G + ++AF+ F+F +L LG+ + S F G ++ I L + Sbjct: 26 GMVELAIYAFVAAFIFFRLYSSLGRAS------SINFQGACATPEKPGDDRIALDAKNDQ 79 Query: 69 DNLDSINELFPIG-TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 ++ + ++ + + + DF ++F+ + ++E I+ + G + Sbjct: 80 QDIPLTSVTEEEHFEEVSPGIEVMRARSMDFSLRNFMAGSAAAFEVIMKALNRGDTELLS 139 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 L+ +Y+ F + R S + +V I KI A + + IT++ + + I+ Sbjct: 140 SLLSDDIYKSFEKEIMRRNSEGHIHEDVVVSIVSQKITAAKVIGDVAAITVKFLTEQINV 199 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + +I+ V D WTF +N + W L +T Sbjct: 200 VRNAAGDVIAGSTSKINVVEDFWTFEKNANSPSRKWYLSAT 240 >gi|254455846|ref|ZP_05069275.1| import inner membrane translocase, subunit Tim44 [Candidatus Pelagibacter sp. HTCC7211] gi|207082848|gb|EDZ60274.1| import inner membrane translocase, subunit Tim44 [Candidatus Pelagibacter sp. HTCC7211] Length = 198 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 97/223 (43%), Gaps = 39/223 (17%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 I+L A I F+FL+LRG+LGK+TG E GK Sbjct: 8 IDIILLAMIAGFIFLRLRGILGKRTGFE--------------------------GKAAPQ 41 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFD---PKDFLNEARNSYEAIVDSFFEGK--VHA 125 D I + V + FD K+F+ A+ +YE I+ F + + Sbjct: 42 FDKILKEA--------VAKQAPVNNETFDENAQKEFIKGAKIAYETIITDFSDNDNKLTT 93 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + L++ +Y FND+L R + + +GI+ I + + +T+ + + I Sbjct: 94 SKPLLNKEIYDQFNDALKERSERGHYAEITFIGINSATIKEHKKIDKILNVTVDFIAEVI 153 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + DKD +IS DPE K+ D W F R++ NPNW L++T Sbjct: 154 TCIKDKDKKIISGDPEKIKKIYDTWVFSRDVTSPNPNWQLVNT 196 >gi|304320483|ref|YP_003854126.1| hypothetical protein PB2503_04547 [Parvularcula bermudensis HTCC2503] gi|303299385|gb|ADM08984.1| hypothetical protein PB2503_04547 [Parvularcula bermudensis HTCC2503] Length = 222 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 111/222 (50%), Gaps = 7/222 (3%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 D +++ F I F+ +L +LG K G+E P + + R ER G+G ++ Sbjct: 2 NDPVLIFFVVIAAFLSYRLYTLLGSKGGHE-PTDAERERIGLPTGRPERD----GQGTQE 56 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 D +++ L + + Y DFDP +F+ A+ +YE I+++F G++ + Sbjct: 57 D--EAVVAPRSDAKPLPAWAETVRADYADFDPDEFVTGAKAAYEMIIEAFANGRLDDVRA 114 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 VD V + F ++ R + ++ ++ +LVGI+ +++ A + + +T++ I + Sbjct: 115 YVDPDVMRTFEIAVRGRDNAQQTMEVTLVGIERAEVVEAKRQSAHLDVTVKFRSDQIRVT 174 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + + +I DP VID WTF R + ++PNW L +T+ Sbjct: 175 RNAEGDVIEGDPNRIDLVIDRWTFSRPLSSTDPNWTLTATEA 216 >gi|58584799|ref|YP_198372.1| hypothetical protein Wbm0542 [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419115|gb|AAW71130.1| Uncharacterized conserved protein related to eukaryotic translocase of inner mitochondrial membrane [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 218 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 96/220 (43%), Gaps = 18/220 (8%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 ++++A + FVF +L LG+ T N K + S+ E + + Sbjct: 1 MIELVIYALLAAFVFSRLYNSLGRSTSLNLKKLTSVLD----ISQVREDVVENIEDYIDS 56 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 ++ D I + I+ DF F+ + +E I+ F +G + ++ Sbjct: 57 NDKDPIKATYE----------QILQKNKDFSISHFMEGSGVVFELIIKYFNQGNLSQLKP 106 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L+D +Y +F + RK + +S +V I KI+ + +N V+I + + + I+ Sbjct: 107 LLDKDLYNNFAGKIKQRK---EIYESIIVSIVSQKILEIKLVKNVVFIAVYFLSEQINFV 163 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + +IS KV D+W F +N+ SNP+W+L S Sbjct: 164 KNDKGDVISGSTSTINKVEDVWQFKKNVTSSNPSWLLTSI 203 >gi|57239470|ref|YP_180606.1| hypothetical protein Erum7440 [Ehrlichia ruminantium str. Welgevonden] gi|58579448|ref|YP_197660.1| hypothetical protein ERWE_CDS_07840 [Ehrlichia ruminantium str. Welgevonden] gi|57161549|emb|CAH58476.1| conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] gi|58418074|emb|CAI27278.1| Hypothetical protein ERWE_CDS_07840 [Ehrlichia ruminantium str. Welgevonden] Length = 213 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 95/222 (42%), Gaps = 11/222 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 + ++AF+ F+F +L LG+ +G + + + + D Sbjct: 1 MVELAIYAFVAAFIFFRLYNSLGRTSGLQ--PNNHSQPVSILIQEDNNH--------DYT 50 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 ++D + + +M I +F K F++ + +++ I+ +F EG + L Sbjct: 51 DIDIESVMESCDDNDKSIMSTIKRKDREFSLKYFMDGSMKAFDIIIKAFNEGNTQILCSL 110 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 +D +Y F + RK+ + + +V I KI + N +IT++ + + I+ Sbjct: 111 LDKDLYNSFLTEIEYRKNLGQVYEDVIVSIIHHKITKLKLSGNIAHITVKFISEQINFVK 170 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIP-PSNPNWVLISTKL 230 D++ ++ K+ D+WTF +++ ++ W L S + Sbjct: 171 DQEGNILQGSTSKINKIEDVWTFKKDMSLLTSKKWYLSSIQP 212 >gi|258541896|ref|YP_003187329.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-01] gi|256632974|dbj|BAH98949.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-01] gi|256636031|dbj|BAI02000.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-03] gi|256639086|dbj|BAI05048.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-07] gi|256642140|dbj|BAI08095.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-22] gi|256645195|dbj|BAI11143.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-26] gi|256648250|dbj|BAI14191.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-32] gi|256651303|dbj|BAI17237.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654294|dbj|BAI20221.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-12] Length = 242 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 100/225 (44%), Gaps = 12/225 (5%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 ++L A + F+ L+LR VLGK+ G +P + + R + GK ++ + Sbjct: 26 VDLVLLALVAAFLVLRLRSVLGKRVGI-QPVQVKLQVRPDAAPR-----VVEGKPEQAET 79 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + P GTR+ ++ DI F P+ FLN A+ ++ +V ++ +G V ++ + Sbjct: 80 AAEFDIPAP-GTRVGTLLADIRQKDPSFTPQQFLNGAQIAFAQVVGAYAQGNVDVLKTYL 138 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE----ENTVYITIRIVGQFIS 186 V F ++ R + E+ ++ + I + I + I I +RIV IS Sbjct: 139 TPAVLAAFEAGITARANAEETQRTDVKAIRSLAIEDVRISPMEAGTAAAIDVRIVSDQIS 198 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 +K+ ++ + + D+WTF R + + W L + + Sbjct: 199 LVLNKEGQPVTG-TDAVTEFSDLWTFERLLDVNGSTWRLAAARSA 242 >gi|114799709|ref|YP_758741.1| Tim44 domain-containing protein [Hyphomonas neptunium ATCC 15444] gi|114739883|gb|ABI78008.1| Tim44 domain protein [Hyphomonas neptunium ATCC 15444] Length = 204 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 23/226 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M + +L+ A + FV +L LG + G+E P KR G + + Sbjct: 1 MSNPLIEVLILAAVALFVLWRLYSALG-RGGDEGPVQRP---APTPEKRPTPGEMPAPQP 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 ++ +N I G + DI + F ++F+ A+ +Y+ IV ++ G +A Sbjct: 57 RRIENERPIFTGPAAG-----ALEDIYNADRSFSTEEFMRGAKAAYQLIVGAYARGDRNA 111 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + L+D VY+ ++ +++ R + L+ I +I A ++ + + +R + Sbjct: 112 LRPLLDDDVYEAWDAAIAERDATGARA-FELLRIKKAEIDRAELDGSMARVMVRYEAEL- 169 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 D E V +IWTF+R++ S+PNW+L ++ Sbjct: 170 ------------GDGETTRIVREIWTFMRDVSSSDPNWLLDDVEVA 203 >gi|71083043|ref|YP_265762.1| translocase [Candidatus Pelagibacter ubique HTCC1062] gi|71062156|gb|AAZ21159.1| Putative translocase transmembrane protein with Tim44 Pfam domain [Candidatus Pelagibacter ubique HTCC1062] Length = 197 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 34/220 (15%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 I+L A I F+FL+LRG+LGKKTG E F ++ + +N Sbjct: 8 IDIILLAMIAGFIFLRLRGILGKKTGFEGKIPPQFEKEFQK--------TNITPKPVSEN 59 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK--VHAIEK 128 D + K+FL A+ +YE I+ F + + A + Sbjct: 60 FDEV------------------------SQKEFLKGAKIAYETIITDFSDSDNKLIASKP 95 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L+ ++Y F ++L R + + + +GI I E+++ +T+ V + I+ Sbjct: 96 LLSKKIYDQFKEALEDRANKGHFAEITFIGIKSAVIKTHKKIEDSLEVTVDFVSEIITCI 155 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 DKD ++S D + V D W F ++I SNPNW+LI+T Sbjct: 156 KDKDKNIVSGDSDKIKTVYDTWVFSKDIKSSNPNWLLINT 195 >gi|91762532|ref|ZP_01264497.1| Putative translocase transmembrane protein with Tim44 Pfam domain [Candidatus Pelagibacter ubique HTCC1002] gi|91718334|gb|EAS84984.1| Putative translocase transmembrane protein with Tim44 Pfam domain [Candidatus Pelagibacter ubique HTCC1002] Length = 197 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 34/220 (15%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 I+L A I F+FL+LRG+LGKKTG E F ++ + +N Sbjct: 8 IDIILLAMIAGFIFLRLRGILGKKTGFEGKIPPQFEKEFQK--------TNITPKPVSEN 59 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK--VHAIEK 128 D + K+FL A+ +YE I+ F + + A + Sbjct: 60 FDEV------------------------SQKEFLKGAKIAYETIITDFSDSDNKLIASKP 95 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L++ ++Y F ++L R + + + +GI I E+++ +T+ V + I+ Sbjct: 96 LLNKKIYDQFKEALEDRANKGHFAEITFIGIKSAVIKTHKKIEDSLEVTVDFVSEIITCI 155 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 DKD ++S D + V D W F ++I SNPNW+LI+T Sbjct: 156 KDKDKNIVSGDSDKIKTVYDTWVFSKDIKSSNPNWLLINT 195 >gi|190571472|ref|YP_001975830.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018875|ref|ZP_03334683.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357744|emb|CAQ55195.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995826|gb|EEB56466.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 219 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 97/220 (44%), Gaps = 18/220 (8%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 ++++A + F+F +L LG+ N K +G S+ E + + Sbjct: 1 MIELVIYALLAAFIFSRLYNSLGRSASLNLKKLTGVLD----VSQSKEDVVENIEDYIYS 56 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 ++ SI + I+ +F +F+ + ++E I+ F +G + ++ Sbjct: 57 NDKSSIETTYE----------QILQKNKEFSISNFIEGSSIAFELIIKYFNQGNLPQLKS 106 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L+D +Y F D + RK + +S +V I KI+ + +N ++I + + + I+ Sbjct: 107 LLDKDLYNSFVDKIKHRK---ETHESIIVSIVSQKILEIKLVKNVIFIAVYFLSEQINFV 163 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + + + S KV D+W F +NI S+ W+L+S Sbjct: 164 KNNEGNITSGSMSTINKVEDVWQFKKNINSSDLTWLLVSI 203 >gi|254417984|ref|ZP_05031708.1| Tim44-like domain superfamily [Brevundimonas sp. BAL3] gi|196184161|gb|EDX79137.1| Tim44-like domain superfamily [Brevundimonas sp. BAL3] Length = 213 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 88/225 (39%), Gaps = 22/225 (9%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 F I++FA I V QL VLGK+ G + + D + + + + + Sbjct: 5 FQIVIFAVIAAIVLFQLYNVLGKRVGRQ-------------PQEDAKALPSSPTSTAEAS 51 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + + + + + FDP F+ AR +YE IV + G A+ L+ Sbjct: 52 KTPALDAATLAS-----IAGLKARDPAFDPNRFVEGARQAYETIVRGYAAGDRAALTPLL 106 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 V F+ ++ R++ + + + A+++ + +R + + S Sbjct: 107 TPNVMASFDAGIAARETRGETETVEFLFPPRADLEGATVQGDKAVAKVRFLAELRSRVTK 166 Query: 191 KDNLL---ISSDP-EIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++ +P + + WTF R + ++PNWVL + Sbjct: 167 ASGDTADSVTGEPLVEERRTAEHWTFERTLGAADPNWVLARVEPA 211 >gi|302381470|ref|YP_003817293.1| import inner membrane translocase subunit Tim44 [Brevundimonas subvibrioides ATCC 15264] gi|302192098|gb|ADK99669.1| import inner membrane translocase subunit Tim44 [Brevundimonas subvibrioides ATCC 15264] Length = 214 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 89/225 (39%), Gaps = 21/225 (9%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 FLI++FA I FV QL VLGKK G +P + + + + + T G Sbjct: 5 FLIVIFAVIAAFVLFQLYNVLGKKVGR-QPQDDAKAPPALPATGPDAPLRTPG------- 56 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + L + + FDP F++ AR +YE IV + G A++ L+ Sbjct: 57 ---------VDATLLAAAASLRARDPAFDPAKFIDGARQAYETIVRGYAAGDRAALKPLL 107 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 V F ++ R++ + + + + AS E + +R + + S Sbjct: 108 TPAVLDSFETGIAARETRGETEQVEFLHPPRADLELASAEGDRAVAKVRFLAELRSKIMP 167 Query: 191 KDNLLISSDPEIF----GKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + P + + WTF R++ S+PNWVL + Sbjct: 168 PADEATPGAPAEPRIEERRTAEHWTFERSLGASDPNWVLARVEPA 212 >gi|262277816|ref|ZP_06055609.1| import inner membrane translocase subunit Tim44 [alpha proteobacterium HIMB114] gi|262224919|gb|EEY75378.1| import inner membrane translocase subunit Tim44 [alpha proteobacterium HIMB114] Length = 204 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 29/226 (12%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 + G I+L A + F+ L+LR LGK N P F+ + + I Sbjct: 4 NFGYIDIILLAIMAGFILLRLRSTLGKGADN-MPMKARFTQAQSNEEFTKPIIE------ 56 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 +I T FD K F+ A +YE I+++F +G A+ Sbjct: 57 ----------------------DEIKQDTTKFDEKIFIKGAEAAYEIIINAFAKGDRKAL 94 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + L+ +Y++F + R+S + + + S +GI + KI++ ++ + + V + ++ Sbjct: 95 KPLLTKDLYKNFEGVIKERESKKISSQMSFIGIKETKILDIDNKDTFYKVKTKFVSEIVN 154 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +I +PE V D+W F +++ ++P W L E Sbjct: 155 CLKSDKGEVIEGNPEEIKLVTDVWVFEKDLKNNDPTWYLTELSSEE 200 >gi|296115110|ref|ZP_06833751.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter hansenii ATCC 23769] gi|295978211|gb|EFG84948.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter hansenii ATCC 23769] Length = 227 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 100/225 (44%), Gaps = 15/225 (6%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 ++ + F+ L+LRG+LGK+ G E P + + + + Sbjct: 12 LVFLGLVAVFLVLRLRGILGKRVGAE-PAARTMQPTPTPAP-------VIEGKPEPVAPA 63 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + ++ TR+ +V+ I + F P F+ + +++ IV ++ G + + + + Sbjct: 64 TTYDIPTPDTRVGQVLSAIAARQQGFTPDGFIRQVEDAFRQIVQAYAVGDIETLRQHLTE 123 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT----VYITIRIVGQFISAS 188 + F ++ +R+ + ++S + I DM II+A + + I +RIV +S + Sbjct: 124 STFTAFEAAIVSRQQAHETMRSEIRDITDMAIIDAELSPDVSVPYARIEVRIVSDQVSVT 183 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKLG 231 D++ +S + + D+WTF R + + P W L +++ Sbjct: 184 LDQNGQPVSG-VDAVTEFSDLWTFERILGAATPGAQWRLGASRSA 227 >gi|329891166|ref|ZP_08269509.1| tim44-like domain protein [Brevundimonas diminuta ATCC 11568] gi|328846467|gb|EGF96031.1| tim44-like domain protein [Brevundimonas diminuta ATCC 11568] Length = 205 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 20/222 (9%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F I++FA I + QL VLGKK G ++ E + Sbjct: 2 TFQIVIFAVIAAVLLFQLYNVLGKKVG----------------RQPEDNPKPVPVPAAPA 45 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + L + + + +FDP FL AR +YE IV ++ +G A+ L Sbjct: 46 GAPEAARGPVVDPALTAAIAGLKTRDPNFDPHRFLEGARQAYETIVRAYAKGDRDALRPL 105 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + +V F ++ R++ LV + A+ E + +R + + + Sbjct: 106 LTDKVMGSFEAGIAAREARGDAESVELVHAPRADLELATTEGDRALAKVRFLAEVRGSLT 165 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++ + + +IWTF R + S+PNW L + Sbjct: 166 PSGGETVTEE----RRTAEIWTFERRLGASDPNWALARVEPA 203 >gi|167648993|ref|YP_001686656.1| import inner membrane translocase subunit Tim44 [Caulobacter sp. K31] gi|167351423|gb|ABZ74158.1| import inner membrane translocase subunit Tim44 [Caulobacter sp. K31] Length = 199 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 90/223 (40%), Gaps = 25/223 (11%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F ++ A + + QL LG++ G +P + + RD + + G+ Sbjct: 1 MFEWIILAALAAVILYQLYATLGRRVGR-QPEDAPAAVPASVAPRDVKTLEVPGEAL--- 56 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + + + DFD FL+ AR +YE IV +F G ++ L Sbjct: 57 ----------------SGLAALRARQADFDIGHFLSGARQAYEMIVKAFAAGDRETLKPL 100 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + + V +F +++ R++ + K+ + + + +E + +RI+ + + S Sbjct: 101 LAADVMANFEAAIADREAAGRTEKAEFLATPRTDLDSIKVEGDVARAVVRILAEVRTRST 160 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + + D+WTF R++ NPNW L+ + E Sbjct: 161 SAAGDAVDD-----RRTADLWTFERDLKSRNPNWTLVRVDVAE 198 >gi|162147851|ref|YP_001602312.1| transporter protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786428|emb|CAP56010.1| putative transporter protein [Gluconacetobacter diazotrophicus PAl 5] Length = 228 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 101/227 (44%), Gaps = 16/227 (7%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 F ++LF + F+ L+LR +LG + G E S G + G+ + Sbjct: 12 FDLVLFGLVAAFLALRLRSILGTRVGVE--------PAPPPSAVPRPGPVIEGRAEPPAT 63 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 L + P TR+ +V+ I DF P FL ++ IV +F G V + + + Sbjct: 64 LTDYDVPAPE-TRVGQVLAAIAQQERDFVPAQFLKGVEAAFRQIVLAFAAGDVAMLRERL 122 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT----VYITIRIVGQFIS 186 + + F ++ +R+ + + K+ + I + I++A+IEE I +RIV IS Sbjct: 123 TANAFSAFEAAIRSREQSGEIQKAEVRAIASLAIVDAAIEERDGATHARIDVRIVSDQIS 182 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP--SNPNWVLISTKLG 231 + DKD ++ + + D+WTF R + S W L +++ Sbjct: 183 LTSDKDGHPVAG-TDAVTEFSDLWTFERPLGVAISGAAWRLAASRSA 228 >gi|209542471|ref|YP_002274700.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter diazotrophicus PAl 5] gi|209530148|gb|ACI50085.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter diazotrophicus PAl 5] Length = 226 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 101/227 (44%), Gaps = 16/227 (7%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 F ++LF + F+ L+LR +LG + G E S G + G+ + Sbjct: 10 FDLVLFGLVAAFLALRLRSILGTRVGVE--------PAPPPSAVPRPGPVIEGRAEPPAT 61 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 L + P TR+ +V+ I DF P FL ++ IV +F G V + + + Sbjct: 62 LTDYDVPAPE-TRVGQVLAAIAQQERDFVPAQFLKGVEAAFRQIVLAFAAGDVAMLRERL 120 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT----VYITIRIVGQFIS 186 + + F ++ +R+ + + K+ + I + I++A+IEE I +RIV IS Sbjct: 121 TANAFSAFEAAIRSREQSGEIQKAEVRAIASLAIVDAAIEERDGATHARIDVRIVSDQIS 180 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP--SNPNWVLISTKLG 231 + DKD ++ + + D+WTF R + S W L +++ Sbjct: 181 LTSDKDGHPVAG-TDAVTEFSDLWTFERPLGVAISGAAWRLAASRSA 226 >gi|330993443|ref|ZP_08317378.1| putative transporter protein [Gluconacetobacter sp. SXCC-1] gi|329759473|gb|EGG75982.1| putative transporter protein [Gluconacetobacter sp. SXCC-1] Length = 258 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 103/237 (43%), Gaps = 20/237 (8%) Query: 6 MD--SGDF--LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61 M+ SG F +++ + F+ L+LR +LG++ G E P + + E+ + Sbjct: 31 MNFISGHFPLDLVVLGLVAVFLVLRLRSILGRRVGAE-PAVRPMAAQPAAQPMVEKPVEP 89 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 E+ TR+ V+ I ++ F P++F ++ IV ++ G Sbjct: 90 PPPAITY-------EIPTPDTRVGGVLARIAALQPGFTPQEFARGTETAFRQIVGAYAAG 142 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT-----VYI 176 + + + + + + F ++ +R+ + ++S + I D+ II A ++E I Sbjct: 143 DLDVLRERLTAATFGAFEAAIQSRQQAGEVLRSEIRDITDIAIIGAEVDEAAGPSPLARI 202 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKLG 231 +RIV IS + D ++ + + D+WTF R + + P W L +++ Sbjct: 203 EVRIVSDQISLTVDSSGHPVAG-VDAVTEFSDLWTFERLLGVNAPGAGWRLGASRSA 258 >gi|295691579|ref|YP_003595272.1| import inner membrane translocase subunit Tim44 [Caulobacter segnis ATCC 21756] gi|295433482|gb|ADG12654.1| import inner membrane translocase subunit Tim44 [Caulobacter segnis ATCC 21756] Length = 198 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 89/223 (39%), Gaps = 26/223 (11%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 IL A + V QL LG++ G + + +G + L Sbjct: 1 MLQILFLAAVAAIVLYQLYATLGRRVGRQPEDTPVKAGAGGPAPVTTDPHPVLR------ 54 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 ++ + + + DFDP F+ AR +YE IV ++ +G ++ L Sbjct: 55 ---------------SEGLAALKARQPDFDPAKFMTGARAAYEQIVTAYADGDRETLKPL 99 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + V +F +++ R++ ++ K + + + + + +T +RI+ + + + Sbjct: 100 LAPEVMANFEQAMAAREAAGRSEKVEFLTSPRLDLESVDLVGDTAKAVVRILAEVRTRTK 159 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D+ + + ++WTF R + +NPNW+L E Sbjct: 160 DERGEGVDD-----RRTAELWTFEREVRNANPNWLLSFVAAAE 197 >gi|16127971|ref|NP_422535.1| hypothetical protein CC_3741 [Caulobacter crescentus CB15] gi|221236793|ref|YP_002519230.1| transporter [Caulobacter crescentus NA1000] gi|13425513|gb|AAK25703.1| conserved hypothetical protein [Caulobacter crescentus CB15] gi|220965966|gb|ACL97322.1| transporter [Caulobacter crescentus NA1000] Length = 234 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 87/222 (39%), Gaps = 29/222 (13%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 F IL A + V QL LG++ G ++ E +T G Sbjct: 41 FQILFLAAVAALVLYQLYSTLGRRVG----------------RQPEDAAVTAMPGAAPAP 84 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 +D + + + + + + DFDP FL R +YE IV ++ EG + L+ Sbjct: 85 VDPVLQ--------AEGVATLRARQPDFDPARFLMGVRAAYEQIVKAYAEGDRETLTPLL 136 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 V +F ++ R++ + K + + + + +T +RI+ + + + D Sbjct: 137 APDVMDNFERAMVARETAGRTEKVEFLTPPRVDLERVDVVGDTAKAVVRILAEVRTRTKD 196 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + + + ++WTF R + ++PNW L E Sbjct: 197 ERGEGVDD-----RRTAELWTFEREVKSTDPNWHLTFVAAAE 233 >gi|261314892|ref|ZP_05954089.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M163/99/10] gi|261303918|gb|EEY07415.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M163/99/10] Length = 168 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 82/152 (53%), Gaps = 4/152 (2%) Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73 +FLQLR VLG++TGNEKP + S + + +++L + + + + Sbjct: 17 IAAVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTA 76 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 I+++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ Sbjct: 77 IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKD 136 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165 VY+ F ++ R+ + V+SS VGID I Sbjct: 137 VYEGFVAAIDEREKRGETVRSSFVGIDKAGIA 168 >gi|254707406|ref|ZP_05169234.1| calcium-binding EF-hand [Brucella pinnipedialis M163/99/10] Length = 164 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 82/152 (53%), Gaps = 4/152 (2%) Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDS 73 +FLQLR VLG++TGNEKP + S + + +++L + + + + Sbjct: 13 IAAVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTA 72 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 I+++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ Sbjct: 73 IDKIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKD 132 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165 VY+ F ++ R+ + V+SS VGID I Sbjct: 133 VYEGFVAAIDEREKRGETVRSSFVGIDKAGIA 164 >gi|330813377|ref|YP_004357616.1| putative translocase transmembrane protein with Tim44 Pfam domain [Candidatus Pelagibacter sp. IMCC9063] gi|327486472|gb|AEA80877.1| putative translocase transmembrane protein with Tim44 Pfam domain [Candidatus Pelagibacter sp. IMCC9063] Length = 193 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 31/210 (14%) Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINEL 77 I F+FL+LR VLGK D I K +D+ + E+ Sbjct: 1 MIAGFIFLRLRNVLGK-------------------GADNSPIKPNFANKSRDDFSFVKEV 41 Query: 78 FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD 137 S FD F A +YE I+++F +G +++ L+ ++Y D Sbjct: 42 ------------RTESNKPVFDEASFKKGAEYAYEMIINAFAKGDKQSLKPLLTKKLYLD 89 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197 F + R + + +GI+ M I S +T R + Q I+ ++ ++ Sbjct: 90 FEKIIDDRNEKKLTSSLTFIGIEKMSIDKVSNVNTKYKVTARFISQIINCLKNEKGEVVE 149 Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 D E D+W+F R++ S+P W L Sbjct: 150 GDAEKTKTTTDVWSFERDLKDSDPTWYLTE 179 >gi|254295483|ref|YP_003061506.1| import inner membrane translocase subunit Tim44 [Hirschia baltica ATCC 49814] gi|254044014|gb|ACT60809.1| import inner membrane translocase subunit Tim44 [Hirschia baltica ATCC 49814] Length = 200 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 26/223 (11%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 D +++FA + FFV +L VLG KTG E P S +G + Sbjct: 2 DIELIIFAAVAFFVLYRLYSVLGTKTGAEPPPSVVREATQKRKNS---------EGSDES 52 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 N+ F M +I + + F P DF +++ +YE IV++F EG + L Sbjct: 53 NVTPFRPSFT--GPGASAMEEISQIDSTFSPSDFTRKSKKAYEMIVEAFAEGDKETLSNL 110 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYITIRIVGQFISAS 188 + VY+ + ++ R+ N L+ + +I +A ++ + +++ Q Sbjct: 111 LVDDVYEAYVSAIDEREQNN-TEPLRLMRLKSAEIADAELLDGDIGQVSVSFEAQL---- 165 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 SD E +IWTF R++ SNP W+L Sbjct: 166 ---------SDGENLRTAKEIWTFERSLKSSNPAWLLGGVSEA 199 >gi|296535049|ref|ZP_06897314.1| Tim44 domain protein [Roseomonas cervicalis ATCC 49957] gi|296264626|gb|EFH10986.1| Tim44 domain protein [Roseomonas cervicalis ATCC 49957] Length = 165 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 1/155 (0%) Query: 77 LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136 + T + + ++ I FDP FL A ++ IV +F G + L+ Y Sbjct: 12 VPDPRTPVGQALQRIRQADAGFDPYAFLGGAEGAFRMIVTAFAAGDRATLRDLLSEDTYA 71 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196 F +++ R+S + ++ + G+ +M I A + + IT+RIV ++ + + Sbjct: 72 GFEQAITARESAGERQRTEIHGVHEMAIDAADLRGSVADITLRIVSDQVNLTTGPQGEAV 131 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 S E ++ D+WTF R++ +P W L+ T+ Sbjct: 132 SG-TEAVTELTDVWTFQRDLRSGDPTWKLVGTQAA 165 >gi|241762227|ref|ZP_04760309.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373274|gb|EER62893.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 217 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 8/206 (3%) Query: 27 LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK 86 L VLG++TG+E+ F+ + ++ +KK + Sbjct: 18 LYNVLGRRTGHEQSFTKPTEVSTTVVAQPNTALLMPASEQKKRE-------EIVQPEAWD 70 Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 +R IVS FD F+ A+++Y I+++F++ + +V V++ F + R+ Sbjct: 71 GIRRIVSRDAHFDLTGFIEGAKSAYGKILEAFWQNDRSKLADMVSKDVFEAFQQVIEKRE 130 Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 + +++ LV ID + A IE + IT+ + + + ++I+ Sbjct: 131 AEGSRLENRLVNIDKALVQKAGIEGDNAIITVSYDAWISTMLRNHEGIMIAGSSTDALPT 190 Query: 207 IDIWTFVRNIPP-SNPNWVLISTKLG 231 D+WTF R+I NW+L+ T Sbjct: 191 HDVWTFSRSIKQEPKTNWLLVETLAA 216 >gi|56552532|ref|YP_163371.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis subsp. mobilis ZM4] gi|260753807|ref|YP_003226700.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56544106|gb|AAV90260.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis subsp. mobilis ZM4] gi|258553170|gb|ACV76116.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 217 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 8/206 (3%) Query: 27 LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK 86 L VLG++TG+E+ F+ + ++ +KK + Sbjct: 18 LYNVLGRRTGHEQSFTKPAEVSTTVVAQPNTALLMPASEQKKRE-------EIVQPEAWD 70 Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 +R IVS FD F+ A+++Y I+++F++ + +V V++ F + R+ Sbjct: 71 GIRRIVSRDAHFDLTGFIEGAKSAYGKILEAFWQNDRSKLADMVSKDVFEAFQQVIEKRE 130 Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 + +++ LV ID + A IE + IT+ + + + ++I+ Sbjct: 131 AEGSRLENRLVNIDKALVQKAGIEGDNAIITVSYDAWISTMLRNHEGIMIAGSSTDALPT 190 Query: 207 IDIWTFVRNIPP-SNPNWVLISTKLG 231 D+WTF R+I NW+L+ T Sbjct: 191 HDVWTFSRSIKQEPKTNWLLVETLAA 216 >gi|11992022|gb|AAG42409.1|AF300471_12 unknown [Zymomonas mobilis subsp. mobilis ZM4] Length = 201 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 8/206 (3%) Query: 27 LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK 86 L VLG++TG+E+ F+ + ++ +KK + Sbjct: 2 LYNVLGRRTGHEQSFTKPAEVSTTVVAQPNTALLMPASEQKKRE-------EIVQPEAWD 54 Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 +R IVS FD F+ A+++Y I+++F++ + +V V++ F + R+ Sbjct: 55 GIRRIVSRDAHFDLTGFIEGAKSAYGKILEAFWQNDRSKLADMVSKDVFEAFQQVIEKRE 114 Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 + +++ LV ID + A IE + IT+ + + + ++I+ Sbjct: 115 AEGSRLENRLVNIDKALVQKAGIEGDNAIITVSYDAWISTMLRNHEGIMIAGSSTDALPT 174 Query: 207 IDIWTFVRNIPP-SNPNWVLISTKLG 231 D+WTF R+I NW+L+ T Sbjct: 175 HDVWTFSRSIKQEPKTNWLLVETLAA 200 >gi|58040316|ref|YP_192280.1| putative translocase transmembrane protein [Gluconobacter oxydans 621H] gi|58002730|gb|AAW61624.1| Putative translocase transmembrane protein [Gluconobacter oxydans 621H] Length = 265 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 100/243 (41%), Gaps = 25/243 (10%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFSKRDERGIITLGKGK- 66 +++ + + ++L VLG++ G E+P +GF G + D Sbjct: 24 LVVLFVLAVALGVRLYRVLGRRVGMQGVRQERPGAGFGPGAQKGAAPDAARPSIPPPLPG 83 Query: 67 -------------KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 + D E+ TR+ V+ +I SV+ F P FL EA ++ Sbjct: 84 QVAGKPGAAPGVFDQAVPDVAYEIPAPATRVGTVLGEIGSVFPGFSPDGFLKEAEGTFRQ 143 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE-- 171 +V +F G A+EKL+ F+ ++ R + +S L GI+ + I++A + Sbjct: 144 VVPAFAVGDRTALEKLLTPASMDSFSAAIDARVQAGETQRSDLRGIESLSILDAMLVSAE 203 Query: 172 ---NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 I ++IV + ++ D++ + E + D+W F R S+ W L ++ Sbjct: 204 DGTRVGRIEVKIVSRQVNILTDREGEPVVG-TEAVTEFHDLWLFERVAGQSDARWRLAAS 262 Query: 229 KLG 231 + Sbjct: 263 RPA 265 >gi|114571519|ref|YP_758199.1| import inner membrane translocase Tim44 [Maricaulis maris MCS10] gi|114341981|gb|ABI67261.1| import inner membrane translocase, subunit Tim44 [Maricaulis maris MCS10] Length = 206 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 49/216 (22%), Positives = 87/216 (40%), Gaps = 17/216 (7%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 D L+ F +L VLG++ G+ + + + + +G Sbjct: 2 DIWTLIGGVAAIFFAYRLYTVLGRREGHMEAPAPRTKPEAASDSDKAPSLRPAFEGPAAA 61 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 L++I V T FDP A+N+Y IV++F G +E L Sbjct: 62 GLEAIAA-----------------VDTRFDPTAVKEGAQNAYVMIVEAFAAGDRKVLEPL 104 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + V + ++ R + V++ + + D+ II A +NT I +R V + + + Sbjct: 105 LAPNVLDRYTTAIDQRADRGETVRTEVERLKDVDIIEAGHADNTARIKVRFVAEIATETR 164 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 D D+ +++ D V + W F R +PNWVL Sbjct: 165 DSDDAVVAGDIGRLSTVTEDWVFERRTNKGDPNWVL 200 >gi|99034421|ref|ZP_01314428.1| hypothetical protein Wendoof_01000767 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 198 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 44/203 (21%), Positives = 90/203 (44%), Gaps = 18/203 (8%) Query: 28 RGVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK 86 LG+ N K + S+ E + + ++ +SI + Sbjct: 1 YNSLGRSANLNLKKLTNVLD----VSRSGEDVVENIEGYIDSNDENSIKVTY-------- 48 Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 + I+ DF F+ + ++E I+ F +G + ++ L+D +Y +F + + RK Sbjct: 49 --KQILKKNKDFSISHFIEGSSIAFELIIKCFNQGNLSQLKPLLDKDLYDNFAEKIKHRK 106 Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 + +S +V I KI+ + +N V+I + + + I+ + + +IS KV Sbjct: 107 ---EVHESIIVSIVSQKILEIKLVKNAVFIAVYFLSEQINFVKNNEGDIISGSTSTINKV 163 Query: 207 IDIWTFVRNIPPSNPNWVLISTK 229 D+W F +N+ S+P+W+L+S Sbjct: 164 EDVWQFKKNVNSSDPSWLLVSIH 186 >gi|315497202|ref|YP_004086006.1| import inner membrane translocase subunit tim44 [Asticcacaulis excentricus CB 48] gi|315415214|gb|ADU11855.1| import inner membrane translocase subunit Tim44 [Asticcacaulis excentricus CB 48] Length = 207 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 20/220 (9%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 +L+ A I V QL VLG++ G V D G + K Sbjct: 5 LLILALIAVVVLFQLYNVLGRRVGF-----KAEDKPVVPKTEDSEGPFNRPGQEPKA--- 56 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 P R+ + + S F+ +F+ +AR +YE IV +F G++ ++ + Sbjct: 57 -----QPERLRMPN-LDALKSRDAHFNEINFVEKAREAYEQIVLAFNRGEIEGLKDRLSE 110 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 VY F ++ R K + S V + ++++ + +R + + + D D Sbjct: 111 SVYGVFAKAIEARGEQ-KAMTVSFVESPKTDLDQIDLKDDRASVRVRFLSELLYEMADPD 169 Query: 193 NLLISSDP-EIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 +P + + + WTF +N+ W+L + Sbjct: 170 G----GEPKKAHRRTAEFWTFQKNLKSPTNPWILSRVEAA 205 >gi|289609222|emb|CBI60483.1| unnamed protein product [Sordaria macrospora] Length = 173 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 78/182 (42%), Gaps = 9/182 (4%) Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINEL 77 + F+ ++L VLGK+TG+E P + +T + Sbjct: 1 MVAAFLAMRLYAVLGKRTGHE-PLPRTADERIATPPVARPIEVTPEAR--------VLGP 51 Query: 78 FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD 137 + + +R +++ FD F+ A+++Y I+++F++G +E L + V + Sbjct: 52 RHVESGAESGLRSLIAADPSFDVAQFIEGAKSAYRMILEAFWKGDEATLEWLTERDVREA 111 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197 F +++ R + + + LV I+ + AS+E +++R + + D + +++ Sbjct: 112 FAQAIADRNAAGHVLDNRLVSIERAVVTEASVEGGVARVSVRFDADIAAITRDAEGNIVA 171 Query: 198 SD 199 Sbjct: 172 GS 173 >gi|88608273|ref|YP_506249.1| Tim44-like domain-containing protein [Neorickettsia sennetsu str. Miyayama] gi|88600442|gb|ABD45910.1| Tim44-like domain protein [Neorickettsia sennetsu str. Miyayama] Length = 208 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 92/218 (42%), Gaps = 15/218 (6%) Query: 12 LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71 ++L+A + FF+F +L G+ + + K + K+ ++ Sbjct: 2 ELILYAILVFFIFNRLYASFGRISVERELGFKAAEVKEILEKK-------------VRDI 48 Query: 72 DSINELFPIG-TRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 D + P + ++I S++ DF F+ A ++E +F + + + KL Sbjct: 49 DQFTYVAPSDLQEIVSAKKEIESLWKQDFSTDRFMEGAERAFEMFTKAFTDCDLKVLSKL 108 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + + + ++ + RK ++ +LV + +I + + +Y T+R V + I+ Sbjct: 109 LSKKAFSVVSEKIEQRKIRGNTLERTLVALRSKNLIKLDVIKGVLYATVRFVSEQINVVR 168 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 D ++S D + + D W F R++ + +WV+ Sbjct: 169 DDAGRVLSGDHDTIEVIEDKWIFERSLKSPHNSWVVCE 206 >gi|254796736|ref|YP_003081572.1| hypothetical protein NRI_0348 [Neorickettsia risticii str. Illinois] gi|254589983|gb|ACT69345.1| conserved hypothetical protein [Neorickettsia risticii str. Illinois] Length = 208 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 94/218 (43%), Gaps = 15/218 (6%) Query: 12 LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71 ++L+A + FF+F +L G+ + F + + I+ KK + Sbjct: 2 ELVLYAILVFFIFNRLYASFGR---------VSVERELGFKAAEVKEILE----KKVRAI 48 Query: 72 DSINELFPIG-TRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 D + P + ++I S++ DF F+ A ++E +F + + + KL Sbjct: 49 DQFTYVAPSDLQEIVSAKKEIESLWKQDFSTDRFMEGAERAFEMFTKAFTDCDLKVLSKL 108 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + + + ++ ++ RK ++ +LV + +I + + +Y T+R V + I+ Sbjct: 109 LSKKAFSVVSEKVAQRKIRGNTLERTLVALRSKNLIKLDVIKGVLYATVRFVSEQINVVR 168 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 D ++S D + + D W F R++ N +WV+ Sbjct: 169 DDAGRILSGDHDTIEVIEDKWVFERSLRSPNNSWVVCE 206 >gi|329847374|ref|ZP_08262402.1| tim44-like domain protein [Asticcacaulis biprosthecum C19] gi|328842437|gb|EGF92006.1| tim44-like domain protein [Asticcacaulis biprosthecum C19] Length = 212 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 95/233 (40%), Gaps = 34/233 (14%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 +++FA + + QL VLG+K G R E +T+ KG Sbjct: 1 MVALIIFAIVAVVILFQLYNVLGRKVGF----------------RAEDKPVTV-KGDDFG 43 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 +L + + P +R+ + + + +F+ +FL +AR SYE +V +F +G++ A++ Sbjct: 44 DLSTKTDKLPEASRMPN-LEMLKTRDANFNELNFLEKARESYEQVVIAFHKGELDAVKDK 102 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + VY F +L R + E+ + S V I + ++ I +R + + Y Sbjct: 103 LSDTVYGIFAKALVGRAAPEETL--SFVDQPKADIDHIDFKDEVAQIRVRFLSEL---VY 157 Query: 190 DKDNLLISSD-----------PEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 +K S + + WTF + + +N W+L + Sbjct: 158 EKTEAPAESAVPPTKADAPKVHRSHKRTAEYWTFQKGMKVANSPWLLTKVEAA 210 >gi|317050977|ref|YP_004112093.1| import inner membrane translocase subunit Tim44 [Desulfurispirillum indicum S5] gi|316946061|gb|ADU65537.1| import inner membrane translocase subunit Tim44 [Desulfurispirillum indicum S5] Length = 249 Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 14/229 (6%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 +S F I FI +F +R + G+ + N P + G +D + + Sbjct: 28 NSATFSIFDILFIGAIIFFIVRALRGRTSRNNNPKDDWTLG---GKDQDSYSPTASNEPR 84 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 D I L+P T +K +R I +F DFL AR + + + ++ I Sbjct: 85 TTPGADKITSLYPEQT-THKGLRPIEMSDPNFTEGDFLAAAREVFSTVQQAKANEELEQI 143 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E L+D + + ++T + K V+ I + +A + T IT++ Sbjct: 144 EFLMDKAMLNQLQEDIATWRKEGKRVQLDSATIHSALVADAIQQMGTDCITVKF-----E 198 Query: 187 ASYDKDNLL--ISSDPEIFGK-VIDIWTFVRNIPPSNPNWVLISTKLGE 232 A+ D+ L + +PE + V + W F+RNI W LI + Sbjct: 199 ATLDRTFLPVDVEGEPEPVHETVTEYWRFMRNIG--EAAWQLIGVYDAD 245 >gi|261253352|ref|ZP_05945925.1| hypothetical protein VIA_003377 [Vibrio orientalis CIP 102891] gi|260936743|gb|EEX92732.1| hypothetical protein VIA_003377 [Vibrio orientalis CIP 102891] Length = 292 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 80/217 (36%), Gaps = 23/217 (10%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F +F +R +LG K G+ + K ++ + + + Sbjct: 98 ILIMGLIAFVIFKLMRSMLGAKQGSMNQQRQQPAFGGSAPKFEQPNVHNFEQPQNAPQGG 157 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 N FD F+N +R Y + ++ ++H IE+ V Sbjct: 158 GFGFGAQTDVPHNYP--------PGFDQSAFINGSREHYRILQGAWNHNQLHTIEEYVSP 209 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 +Y+D + R + ++ + D +I+ A + ++++ G++ A Sbjct: 210 SLYEDLK---AERAKLNGEQHTDVMYV-DAEIVRADHDATKAQLSLQFSGRYRDAV---- 261 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I D + DIW R++ N W+++ + Sbjct: 262 -EGIEED------ITDIWHLERDLTTPNAPWLIVGIQ 291 >gi|149192059|ref|ZP_01870285.1| hypothetical protein VSAK1_02529 [Vibrio shilonii AK1] gi|148834122|gb|EDL51133.1| hypothetical protein VSAK1_02529 [Vibrio shilonii AK1] Length = 294 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 86/222 (38%), Gaps = 30/222 (13%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 IL+F I F +F +RG+LG K G ++P G + + + + G Sbjct: 97 ILIFGLIAFVIFKFMRGMLGAKQGSMNQQRQQPAFGGNTRNQFEQQPNFQNFEQPQNGGA 156 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 + FD FLN AR Y + ++ ++H IE Sbjct: 157 ATGGFGAAGHSDVPHNYP----------PGFDQAAFLNGAREHYRILQGAWNHNELHTIE 206 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 + V + QD ++ R E + ++ + D +I+ A + N ++++ G++ A Sbjct: 207 EYVSPSLLQDL---MAERAKLEGEQHTDVMYV-DAEIVRADFDANKAQLSLQFSGRYRDA 262 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + + D + DIW R++ N W+++ + Sbjct: 263 VEN-----VEED------IEDIWHLERDLTVPNAPWLIVGIQ 293 >gi|260767913|ref|ZP_05876847.1| hypothetical protein VFA_000962 [Vibrio furnissii CIP 102972] gi|260615943|gb|EEX41128.1| hypothetical protein VFA_000962 [Vibrio furnissii CIP 102972] gi|315179616|gb|ADT86530.1| Tim44-like domain family [Vibrio furnissii NCTC 11218] Length = 291 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 93/218 (42%), Gaps = 26/218 (11%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F +F +RG+LG K G+ + + F + ++ N+ Sbjct: 98 ILIIGLIAFVIFKLMRGLLGAKQGS---MNQHQQQQPAFGGMNRNTF-------EQPNVH 147 Query: 73 SINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 + + G +++ D+ Y FD F+N AR Y + ++ ++ IE+ V Sbjct: 148 NFEQPQNSGGFGSQMQSDVPHNYPDGFDRVAFVNGAREHYRILQGAWNHNQLETIEEYVS 207 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 +++D + R + + ++ ++ + D +I+ A + N ++++ G++ S D Sbjct: 208 PSLFEDLK---AERAKIDTDPQTDVMYV-DAEIVRADYDANKAQLSLQFSGRYRDPSEDL 263 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + + DIW R++ N W+++ + Sbjct: 264 EEN-----------IDDIWHLERDLTTPNAPWLIVGIQ 290 >gi|218460136|ref|ZP_03500227.1| hypothetical protein RetlK5_11796 [Rhizobium etli Kim 5] Length = 121 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER--GIITLG 63 M S DF+ L F +F QLR VLG++TGNEKP ++ + ++TL Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60 Query: 64 K----GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + G+ +D +I+ + GT LN+ +R + F+PK+FLN AR +YE IV ++ Sbjct: 61 RRDATGEDEDRFAAIDAVAAPGTPLNESLRALNKADPSFNPKEFLNGARMAYEMIVMAYA 120 Query: 120 E 120 + Sbjct: 121 D 121 >gi|163803720|ref|ZP_02197579.1| hypothetical protein 1103602000427_AND4_04363 [Vibrio sp. AND4] gi|159172471|gb|EDP57338.1| hypothetical protein AND4_04363 [Vibrio sp. AND4] Length = 288 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 90/223 (40%), Gaps = 37/223 (16%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 IL+ I F +F +RG+LG K G ++P G + K+ + ++ Sbjct: 96 ILIMGLIAFVIFKLMRGMLGAKQGTMNQHRQQPAFGGNASKFEQP--------NMQNFEQ 147 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + N GT DI Y FD F+N +R Y + ++ ++H I Sbjct: 148 QPN--------SAGTGGFGSKTDIPHNYPPGFDQAAFVNGSREHYRTLQGAWNHNQLHTI 199 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E+ V ++ D + R + + ++ + D +I+ A + N ++++ G++ Sbjct: 200 EEYVSPSLFDDLK---AERAKLDGEQHTDVMYV-DAEIVRADYDANKAQLSLQFSGRYRD 255 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + + D + DIW R++ N W+++ + Sbjct: 256 SV-----EGVEED------IQDIWHLERDLTVPNAPWLIVGIQ 287 >gi|28897713|ref|NP_797318.1| hypothetical protein VP0939 [Vibrio parahaemolyticus RIMD 2210633] gi|28805926|dbj|BAC59202.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|328473305|gb|EGF44153.1| hypothetical protein VP10329_21550 [Vibrio parahaemolyticus 10329] Length = 290 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 82/219 (37%), Gaps = 27/219 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 IL+ I F +F +RG+LG K G N++ F G ++ Sbjct: 96 ILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNASKFEQPNMQNFEQQPNTNAGG 155 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + FD F+N +R Y + ++ ++ IE+ V Sbjct: 156 FTGFGAQTDVPHNYP----------PGFDQAAFINGSREHYRILQGAWNHNQLDTIEEYV 205 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 +++D + R E + ++ + D +I+ A + N ++++ G++ A+ Sbjct: 206 SPSLFEDLK---AERAKLEGEQHTDVMYV-DAEIVRAEYDANKAQLSLQFSGRYRDAA-- 259 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + D + DIW R++ N W+++ + Sbjct: 260 ---EGVEED------IEDIWHLERDLTVPNAPWLIVGIQ 289 >gi|269965560|ref|ZP_06179674.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269829785|gb|EEZ84020.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 290 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 84/217 (38%), Gaps = 23/217 (10%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F +F +RG+LG K G+ + SK ++ + + +N Sbjct: 96 ILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNFEQQPNTNNGG 155 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 N FD F+N +R Y + ++ ++ IE+ V Sbjct: 156 FGGFGAQTDVPHNYP--------PGFDQAAFINGSREHYRILQGAWNHNQLETIEEYVSP 207 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 +++D + R + + ++ + D +I+ A + N ++++ G++ Sbjct: 208 SLFEDLK---AERAKLDGEQHTDVMYV-DAEIVRADYDANKAQLSLQFSGRYR------- 256 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + E ++ DIW R++ N W+++ + Sbjct: 257 -DTVEGVEE---EIEDIWHLERDLTAPNAPWLIVGIQ 289 >gi|254507626|ref|ZP_05119759.1| import inner membrane translocase, subunit Tim44 [Vibrio parahaemolyticus 16] gi|219549513|gb|EED26505.1| import inner membrane translocase, subunit Tim44 [Vibrio parahaemolyticus 16] Length = 292 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 83/217 (38%), Gaps = 23/217 (10%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F +F +RG+LG K G+ + K ++ + + ++ + Sbjct: 98 ILIIGLIAFVIFKLMRGMLGAKQGSMNQQRQQPAFGGSAPKFEQPNVHNFEQPQQTGSQG 157 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 N FD F+N +R Y + ++ ++ IE+ V Sbjct: 158 GFGFGSQTDVPHNYP--------PGFDHAAFINGSREHYRILQGAWNHNQLETIEEYVSP 209 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 ++ L + ++ + + + V D +I+ A + + ++++ G++ A Sbjct: 210 SLF----ADLKSERAKLEGEQHTDVMYVDAEIVRADYDASKAQLSLQFSGRYRDAV---- 261 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I D + DIW R++ N W+++ + Sbjct: 262 -EGIEED------IADIWHLERDLTVPNAPWLIVGIQ 291 >gi|323491921|ref|ZP_08097090.1| hypothetical protein VIBR0546_04127 [Vibrio brasiliensis LMG 20546] gi|323313779|gb|EGA66874.1| hypothetical protein VIBR0546_04127 [Vibrio brasiliensis LMG 20546] Length = 292 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 81/217 (37%), Gaps = 23/217 (10%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F +F +RG+LG K G+ + K ++ + + + Sbjct: 98 ILIMGLIAFVIFKLMRGMLGSKQGSMNKNRQQPAFGGSAPKFEQPNVHNFEQPQSGAQGG 157 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 N FD F+N +R Y + ++ ++ IE+ V Sbjct: 158 GFGFGAQSDIPHNYP--------PGFDQTAFINGSREHYRILQGAWNHNQLETIEEYVSP 209 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 +++D R E + ++ + D +I+ A + + ++++ G++ + Sbjct: 210 SLFEDLKS---ERAKLEGEQHTDVMYV-DAEIVRADYDASKAQLSLQFSGRYRDSV---- 261 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I + + DIW R++ N W+++ + Sbjct: 262 -EGIEEN------IEDIWHLERDLTTPNAPWLIVGIQ 291 >gi|260776293|ref|ZP_05885188.1| hypothetical protein VIC_001677 [Vibrio coralliilyticus ATCC BAA-450] gi|260607516|gb|EEX33781.1| hypothetical protein VIC_001677 [Vibrio coralliilyticus ATCC BAA-450] Length = 292 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 83/217 (38%), Gaps = 23/217 (10%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ + F +F +RG+LG K G+ + K ++ + + + + Sbjct: 98 ILIMGLVAFIIFKLMRGLLGSKQGSMNQQRQQPAFGGSAPKFEQPNVHNFEQQPQSGSQG 157 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 N FD F+N +R Y + ++ ++ IE+ V Sbjct: 158 GFGFGAQSDIPHNYP--------PGFDKVAFINGSREHYRTLQGAWNHNQLDTIEEYVSP 209 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 +++D + R E + ++ + D +I+ A + + ++++ G++ A + + Sbjct: 210 SLFEDLK---AERAKLEGEQHTDVMYV-DAEIVRADYDASKAQLSLQFSGRYRDAVENVE 265 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + DIW R++ N W+++ + Sbjct: 266 EN-----------IEDIWHLERDLTVPNAPWLIVGIQ 291 >gi|262394794|ref|YP_003286648.1| hypothetical protein VEA_004023 [Vibrio sp. Ex25] gi|262338388|gb|ACY52183.1| hypothetical protein VEA_004023 [Vibrio sp. Ex25] Length = 290 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 83/217 (38%), Gaps = 23/217 (10%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F +F +RG+LG K G+ + SK ++ + + +N Sbjct: 96 ILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNFEQQPNTNNGG 155 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 N FD F+N +R Y + ++ ++ IE+ V Sbjct: 156 FGGFGAQTDVPHNYP--------PGFDQAAFINGSREHYRILQGAWNHNQLETIEEYVSP 207 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 +++D + R + + ++ + D +I+ A N ++++ G++ Sbjct: 208 SLFEDLK---AERAKLDGEQHTDVMYV-DAEIVRADYNANKAQLSLQFSGRYR------- 256 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + E ++ DIW R++ N W+++ + Sbjct: 257 -DTVEGVEE---EIEDIWHLERDLTVPNAPWLIVGIQ 289 >gi|86148689|ref|ZP_01066968.1| hypothetical protein MED222_20209 [Vibrio sp. MED222] gi|218710150|ref|YP_002417771.1| hypothetical protein VS_2180 [Vibrio splendidus LGP32] gi|85833536|gb|EAQ51715.1| hypothetical protein MED222_20209 [Vibrio sp. MED222] gi|218323169|emb|CAV19346.1| hypothetical protein VS_2180 [Vibrio splendidus LGP32] Length = 307 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 91/226 (40%), Gaps = 27/226 (11%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGN--------EKPFSGFFSGKYVFSKRDERGIITLGK 64 IL+ I F F LRG+LG K G+ ++P G + + + + Sbjct: 99 ILIMGLIAFLAFKFLRGMLGAKQGSMNQQNARGQQPAFGGMGQNKFEQPKQQPNVHNFEQ 158 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKV 123 + + S N G D+ Y FD F+N +R Y + ++ ++ Sbjct: 159 AQPQSQPHSQNS---AGGFGFGAQSDVPHNYPPGFDQAAFINGSREHYRTLQGAWNHNEL 215 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 + IE+ V +++D + R + + + ++ + D +I+ A + + ++++ G+ Sbjct: 216 NTIEEYVSPSLFEDLK---AERNKLDGDQHTDVMYV-DAEIVRADHDGSKAQLSLQFSGR 271 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + D I D + DIW R++ N W+++ + Sbjct: 272 Y----RDTA-DGIEED------ITDIWHLERDLTTQNAPWLIVGIQ 306 >gi|260878333|ref|ZP_05890688.1| import inner membrane translocase, subunit Tim44 [Vibrio parahaemolyticus AN-5034] gi|308092753|gb|EFO42448.1| import inner membrane translocase, subunit Tim44 [Vibrio parahaemolyticus AN-5034] Length = 287 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 81/217 (37%), Gaps = 27/217 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 IL+ I F +F +RG+LG K G N++ F G ++ Sbjct: 96 ILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNASKFEQPNMQNFEQQPNTNAGG 155 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + FD F+N +R Y + ++ ++ IE+ V Sbjct: 156 FTGFGAQTDVPHNYP----------PGFDQAAFINGSREHYRILQGAWNHNQLDTIEEYV 205 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 +++D + R E + ++ + D +I+ A + N ++++ G++ A+ Sbjct: 206 SPSLFEDLK---AERAKLEGEQHTDVMYV-DAEIVRAEYDANKAQLSLQFSGRYRDAA-- 259 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 + D + DIW R++ N W+++ Sbjct: 260 ---EGVEED------IEDIWHLERDLTVPNAPWLIVG 287 >gi|37679309|ref|NP_933918.1| hypothetical protein VV1125 [Vibrio vulnificus YJ016] gi|320156948|ref|YP_004189327.1| hypothetical protein VVM_03684 [Vibrio vulnificus MO6-24/O] gi|326424146|ref|NP_761953.2| hypothetical protein VV1_3163 [Vibrio vulnificus CMCP6] gi|37198052|dbj|BAC93889.1| conserved hypothetical protein [Vibrio vulnificus YJ016] gi|319932260|gb|ADV87124.1| hypothetical protein VVMO6_02102 [Vibrio vulnificus MO6-24/O] gi|319999531|gb|AAO11480.2| hypothetical protein VV1_3163 [Vibrio vulnificus CMCP6] Length = 289 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 86/218 (39%), Gaps = 26/218 (11%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F +F +RG+L K G+ + K ++ + + Sbjct: 96 ILIIGLIAFVIFKLMRGLLASKQGSMNQHRQQPAFGGQAPKFEQSNVHNFEQSPNT---- 151 Query: 73 SINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 P G D+ Y FD F+N AR Y + ++ ++ IE+ V Sbjct: 152 ------PTGGFGFGAQSDVPHNYPPGFDQVAFVNGAREHYRILQGAWNHNQLETIEEYVS 205 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 +++D + R + + ++ + D +I+ A + +T +++++ G++ A Sbjct: 206 PSLFEDLK---AERAKLDGEQHTDVMYV-DAQIVRADYDASTAHLSLQFSGRYRDAV--- 258 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I D + DIW R++ N W+++ + Sbjct: 259 --EGIEED------ITDIWHLERDLTAPNAPWMIVGIQ 288 >gi|84387756|ref|ZP_00990772.1| hypothetical protein V12B01_05945 [Vibrio splendidus 12B01] gi|84377439|gb|EAP94306.1| hypothetical protein V12B01_05945 [Vibrio splendidus 12B01] Length = 302 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 88/223 (39%), Gaps = 25/223 (11%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F F LRG+LG K G+ + + G + K++ N+ Sbjct: 98 ILIMGLIAFLAFKFLRGMLGAKQGS----MNQQNARGQQPAFGGMGQNKFEQPKQQPNVH 153 Query: 73 SINELFPIGTRLNKVMRDIVSVY------TDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + + P FD F+N +R Y + ++ +++ I Sbjct: 154 NFEQAQPQSQGAAGGFGFGAQSDVPHNYPPGFDQAAFINGSREHYRTLQGAWNHNELNTI 213 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E+ V +++D + R + + + ++ + D +I+ A + + ++++ G++ Sbjct: 214 EEYVSPSLFEDLK---AERNKLDGDQHTDVMYV-DAEIVRADHDGSKAQLSLQFSGRY-- 267 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 D + + + DIW R++ +N W+++ + Sbjct: 268 --RDTADGVEE-------DITDIWHLERDLTTNNAPWLIVGIQ 301 >gi|148977909|ref|ZP_01814462.1| hypothetical protein VSWAT3_01775 [Vibrionales bacterium SWAT-3] gi|145962855|gb|EDK28127.1| hypothetical protein VSWAT3_01775 [Vibrionales bacterium SWAT-3] Length = 304 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 85/223 (38%), Gaps = 25/223 (11%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F F LRG+LG K G+ + + G + ++ N+ Sbjct: 100 ILIMGLIAFLAFKFLRGMLGAKQGS----MNQQNARGQQPAFGGMGQNKFEQPTQQPNVH 155 Query: 73 SINELFPIGTRLNKVMRDIVSVY------TDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + + P FD F+N +R Y + ++ ++ I Sbjct: 156 NFEQAQPQSQGTAGGFGFGAQSDVPHNYPPGFDQAAFINGSREHYRTLQGAWNHNELSTI 215 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E+ V +++D + R + + + ++ + D +I+ A + + ++++ G++ Sbjct: 216 EEYVSPSLFEDLK---AERSKLDGDQHTDVMYV-DAEIVRADHDGSKAQLSLQFSGRY-- 269 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 D I D + DIW R++ N W+++ + Sbjct: 270 --RDSA-EGIEED------ITDIWHLERDLTTDNAPWLIVGIQ 303 >gi|323499402|ref|ZP_08104378.1| hypothetical protein VISI1226_21579 [Vibrio sinaloensis DSM 21326] gi|323315587|gb|EGA68622.1| hypothetical protein VISI1226_21579 [Vibrio sinaloensis DSM 21326] Length = 292 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 84/217 (38%), Gaps = 23/217 (10%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F +F +RG+LG K G+ + + + E+ + + + + Sbjct: 98 ILIIGLIAFLIFKLMRGMLGAKQGSMNQHRQQPAFGGQSAPKFEQPNVHNFEQPQTGSQG 157 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 N FD F+N +R Y + ++ ++ IE+ V Sbjct: 158 GFGFGGQTDVPHNYP--------PGFDHAAFINGSREHYRILQGAWNHNQLETIEEYVSP 209 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 +Y+D + R + + ++ + D +I+ A + + ++++ G++ A Sbjct: 210 SLYEDLK---AERAKLDGEQHTDVMYV-DAEIVRADYDASKAQLSLQFSGRYRDA----- 260 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + E + DIW R++ N W+++ + Sbjct: 261 ---VEGVEEN---IEDIWHLERDLTTPNAPWLIVGIQ 291 >gi|261210612|ref|ZP_05924905.1| hypothetical protein VCJ_000865 [Vibrio sp. RC341] gi|260840397|gb|EEX66968.1| hypothetical protein VCJ_000865 [Vibrio sp. RC341] Length = 289 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 87/219 (39%), Gaps = 28/219 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F +F +RG+L K G+ + F + ++ N+ Sbjct: 96 ILIMGLIAFVIFKLMRGLLASKQGS----MNQSQQQPAFGGMNRTPF-------EQPNVH 144 Query: 73 SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + +G + DI Y FD F+N AR Y + ++ ++ I + V Sbjct: 145 NFEQPQSMGGGFGSAAQSDIPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 204 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 ++ D L ++N + + + V D +I+ A + N ++++ G++ A Sbjct: 205 SPSLFDD----LKAERANYEGEQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 258 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I + + D+W R++ N W+++ + Sbjct: 259 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 288 >gi|302773644|ref|XP_002970239.1| hypothetical protein SELMODRAFT_441105 [Selaginella moellendorffii] gi|300161755|gb|EFJ28369.1| hypothetical protein SELMODRAFT_441105 [Selaginella moellendorffii] Length = 257 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 9/149 (6%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 + + + ++ K F EA + Y+ I G + + +LV + + + R++ Sbjct: 105 LAKLRKKHKGYNQKVFYREATDLYKEINKLSAAGDLGKLRRLVTEHFFSVIKNQIKQRQA 164 Query: 148 NEKNVKSSLVG-IDDMK--------IINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 V +VG I M+ I ++ V IT+RI I A+YDK+N +I Sbjct: 165 AYSRVHWEMVGQIKLMRTLQGRLIGIDRKDLDNAFVQITLRIQSNQIFAAYDKNNNIIKG 224 Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 D E V DIW F +++ + W L Sbjct: 225 DLEKPLLVEDIWIFEKHLTRPDSTWRLCG 253 >gi|258626499|ref|ZP_05721339.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258581210|gb|EEW06119.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 290 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 88/219 (40%), Gaps = 28/219 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F +F +RG+L K G+ + +S + ++ N+ Sbjct: 97 ILIMGLIAFVIFKLMRGLLASKQGS----MNQSQQQPAYSGMNRTSF-------EQPNVH 145 Query: 73 SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + +G + D+ Y FD F+N AR Y + ++ ++ I + V Sbjct: 146 NFEQPQSMGGGFGSAAQSDVPHNYPVGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 205 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 +++D ++N + + + V D +I+ A + N ++++ G++ A Sbjct: 206 SPSLFEDLQAE----RANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 259 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I + + D+W R++ N W+++ + Sbjct: 260 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 289 >gi|258621272|ref|ZP_05716306.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|262171047|ref|ZP_06038725.1| hypothetical protein VII_001862 [Vibrio mimicus MB-451] gi|258586660|gb|EEW11375.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|261892123|gb|EEY38109.1| hypothetical protein VII_001862 [Vibrio mimicus MB-451] Length = 290 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 88/219 (40%), Gaps = 28/219 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F +F +RG+L K G+ + +S + ++ N+ Sbjct: 97 ILIMGLIAFVIFKLMRGLLASKQGS----MNQSQQQPAYSGMNRTSF-------EQPNVH 145 Query: 73 SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + +G + D+ Y FD F+N AR Y + ++ ++ I + V Sbjct: 146 NFEQPQSMGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 205 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 +++D ++N + + + V D +I+ A + N ++++ G++ A Sbjct: 206 SPSLFEDLQAE----RANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 259 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I + + D+W R++ N W+++ + Sbjct: 260 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 289 >gi|262166075|ref|ZP_06033812.1| hypothetical protein VMA_002525 [Vibrio mimicus VM223] gi|262025791|gb|EEY44459.1| hypothetical protein VMA_002525 [Vibrio mimicus VM223] Length = 290 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 88/219 (40%), Gaps = 28/219 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F +F +RG+L K G+ + +S + ++ N+ Sbjct: 97 ILIMGLIAFVIFKLMRGLLASKQGS----MNQSQQQPAYSGMNRTSF-------EQPNVH 145 Query: 73 SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + +G + D+ Y FD F+N AR Y + ++ ++ I + V Sbjct: 146 NFEQPQSMGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 205 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 +++D ++N + + + V D +I+ A + N ++++ G++ A Sbjct: 206 SPSLFEDLQAE----RANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 259 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I + + D+W R++ N W+++ + Sbjct: 260 ---EGIEEN------IEDVWHLERDLTVQNAPWLIVGIQ 289 >gi|302793266|ref|XP_002978398.1| hypothetical protein SELMODRAFT_418250 [Selaginella moellendorffii] gi|300153747|gb|EFJ20384.1| hypothetical protein SELMODRAFT_418250 [Selaginella moellendorffii] Length = 260 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 9/149 (6%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 + + + ++ K F EA + Y+ I G + + +LV + + + R++ Sbjct: 108 LAKLRKKHKGYNQKVFYREATDLYKEINKLSAAGDLGKLRRLVTEHFFSVIKNQIKQRQA 167 Query: 148 NEKNVKSSLVG-IDDMK--------IINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 V +VG I M+ I ++ V IT+RI I A+YDK+N +I Sbjct: 168 AYSRVHWEMVGQIKLMRTLQGRLIGIDRKDLDNAFVQITLRIQSNQIFAAYDKNNNIIKG 227 Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 D E V DIW F +++ + W L Sbjct: 228 DLEKPLLVEDIWIFEKHLTRPDSTWRLCG 256 >gi|229515345|ref|ZP_04404805.1| hypothetical protein VCB_003002 [Vibrio cholerae TMA 21] gi|229348050|gb|EEO13009.1| hypothetical protein VCB_003002 [Vibrio cholerae TMA 21] Length = 291 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 87/219 (39%), Gaps = 28/219 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F +F +R L K G+ + +S + ++ N+ Sbjct: 98 ILIMGLIAFVIFKLMRAFLASKQGS----INQSQQQPAYSGMNRTPF-------EQPNVH 146 Query: 73 SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + +G + D+ Y FD F+N AR Y + ++ ++ I + V Sbjct: 147 NFEQPQSVGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 206 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 +++D L ++N + + + V D +I+ A + N ++++ G++ A Sbjct: 207 SPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 260 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I + + D+W R++ N W+++ + Sbjct: 261 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 290 >gi|312882412|ref|ZP_07742153.1| hypothetical protein VIBC2010_18049 [Vibrio caribbenthicus ATCC BAA-2122] gi|309369812|gb|EFP97323.1| hypothetical protein VIBC2010_18049 [Vibrio caribbenthicus ATCC BAA-2122] Length = 281 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 25/219 (11%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 IL+ I F +F +R +LG K G N+ F G ++ + + Sbjct: 85 ILIMGIIAFVIFKLVRAMLGAKQGSLNQHRQQPAFGGSASKFEQPNVNQFKEQQQPTTNQ 144 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 N FD F+N +R Y + ++ ++ IE+ V Sbjct: 145 TGGFGFSAQSDVPHNYP--------PGFDNAAFVNGSREHYRLLQGAWNHNQLDTIEEYV 196 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 ++ D R + V D +I+ A + + ++++ G++ Sbjct: 197 SQSLFDDLKT---ERAKLSGEQHTD-VMFVDAEIVRADYDASKAQLSLQFSGRYRDTV-- 250 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I D + DIW R++ N W+++ + Sbjct: 251 ---EGIEED------ITDIWHLERDLTTPNAPWLIVGIQ 280 >gi|262404319|ref|ZP_06080874.1| hypothetical protein VOA_002310 [Vibrio sp. RC586] gi|262349351|gb|EEY98489.1| hypothetical protein VOA_002310 [Vibrio sp. RC586] Length = 290 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 87/219 (39%), Gaps = 28/219 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F +F +RG+L K G+ + +S + ++ N+ Sbjct: 97 ILIMGLIAFVIFKLMRGLLASKQGS----MNHSQQQPAYSGMNRTSF-------EQPNVH 145 Query: 73 SINELFPIGTRLNK-VMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + +G D+ Y FD F+N AR Y + ++ ++ I + V Sbjct: 146 NFEQPQSMGGGFGSTAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 205 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 +++D L ++N + + V D +I+ A + N ++++ G++ A Sbjct: 206 SPSLFED----LKAERANYAGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 259 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I + + D+W R++ N W+++ + Sbjct: 260 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 289 >gi|229529012|ref|ZP_04418402.1| hypothetical protein VCG_002105 [Vibrio cholerae 12129(1)] gi|229332786|gb|EEN98272.1| hypothetical protein VCG_002105 [Vibrio cholerae 12129(1)] Length = 291 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 87/219 (39%), Gaps = 28/219 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F +F +R L K G+ + +S + ++ N+ Sbjct: 98 ILIMGLIAFVIFKLMRAFLASKQGS----LNQSQQQPAYSGMNRTPF-------EQPNVH 146 Query: 73 SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + +G + D+ Y FD F+N AR Y + ++ ++ I + V Sbjct: 147 NFEQPQSMGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 206 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 +++D L ++N + + + V D +I+ A + N ++++ G++ A Sbjct: 207 SPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 260 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I + + D+W R++ N W+++ + Sbjct: 261 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 290 >gi|229521878|ref|ZP_04411295.1| hypothetical protein VIF_002420 [Vibrio cholerae TM 11079-80] gi|229340803|gb|EEO05808.1| hypothetical protein VIF_002420 [Vibrio cholerae TM 11079-80] Length = 291 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 87/219 (39%), Gaps = 28/219 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F +F +R L K G+ + +S + ++ N+ Sbjct: 98 ILIMGLIAFVIFKLMRAFLASKQGS----INQSQQQPAYSGMNRTPF-------EQPNVH 146 Query: 73 SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + +G + D+ Y FD F+N AR Y + ++ ++ I + V Sbjct: 147 NFEQPQSMGGGFGSAAQSDVPHNYPVGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 206 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 +++D L ++N + + + V D +I+ A + N ++++ G++ A Sbjct: 207 SPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 260 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I + + D+W R++ N W+++ + Sbjct: 261 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 290 >gi|254286893|ref|ZP_04961845.1| hypothetical protein A33_1875 [Vibrio cholerae AM-19226] gi|150423043|gb|EDN14992.1| hypothetical protein A33_1875 [Vibrio cholerae AM-19226] Length = 291 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 87/219 (39%), Gaps = 28/219 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F +F +R L K G+ + +S + ++ N+ Sbjct: 98 ILIMGLIAFVIFKLMRAFLASKQGS----INQSQQQPAYSGMNRTPF-------EQPNVH 146 Query: 73 SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + +G + D+ Y FD F+N AR Y + ++ ++ I + V Sbjct: 147 NFEQPQSMGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 206 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 +++D L ++N + + + V D +I+ A + N ++++ G++ A Sbjct: 207 SPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 260 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I + + D+W R++ N W+++ + Sbjct: 261 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 290 >gi|15641966|ref|NP_231598.1| hypothetical protein VC1964 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590647|ref|ZP_01677981.1| hypothetical protein VC274080_2004 [Vibrio cholerae 2740-80] gi|121728634|ref|ZP_01681653.1| hypothetical protein VCV52_1929 [Vibrio cholerae V52] gi|147674189|ref|YP_001217491.1| hypothetical protein VC0395_A1550 [Vibrio cholerae O395] gi|153217402|ref|ZP_01951153.1| hypothetical protein A55_2172 [Vibrio cholerae 1587] gi|153801838|ref|ZP_01956424.1| hypothetical protein A51_B2032 [Vibrio cholerae MZO-3] gi|153822436|ref|ZP_01975103.1| hypothetical protein A5E_2262 [Vibrio cholerae B33] gi|229507945|ref|ZP_04397450.1| hypothetical protein VCF_003177 [Vibrio cholerae BX 330286] gi|229511819|ref|ZP_04401298.1| hypothetical protein VCE_003228 [Vibrio cholerae B33] gi|229518956|ref|ZP_04408399.1| hypothetical protein VCC_002983 [Vibrio cholerae RC9] gi|229523980|ref|ZP_04413385.1| hypothetical protein VCA_001559 [Vibrio cholerae bv. albensis VL426] gi|229607490|ref|YP_002878138.1| hypothetical protein VCD_002402 [Vibrio cholerae MJ-1236] gi|254226808|ref|ZP_04920380.1| hypothetical protein VCV51_1323 [Vibrio cholerae V51] gi|254849050|ref|ZP_05238400.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255745285|ref|ZP_05419234.1| hypothetical protein VCH_001631 [Vibrio cholera CIRS 101] gi|262156009|ref|ZP_06029129.1| hypothetical protein VIG_001228 [Vibrio cholerae INDRE 91/1] gi|262167916|ref|ZP_06035616.1| hypothetical protein VIJ_001090 [Vibrio cholerae RC27] gi|297579473|ref|ZP_06941401.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|9656503|gb|AAF95112.1| hypothetical protein VC_1964 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547490|gb|EAX57596.1| hypothetical protein VC274080_2004 [Vibrio cholerae 2740-80] gi|121629097|gb|EAX61542.1| hypothetical protein VCV52_1929 [Vibrio cholerae V52] gi|124113586|gb|EAY32406.1| hypothetical protein A55_2172 [Vibrio cholerae 1587] gi|124122610|gb|EAY41353.1| hypothetical protein A51_B2032 [Vibrio cholerae MZO-3] gi|125620655|gb|EAZ49017.1| hypothetical protein VCV51_1323 [Vibrio cholerae V51] gi|126520012|gb|EAZ77235.1| hypothetical protein A5E_2262 [Vibrio cholerae B33] gi|146316072|gb|ABQ20611.1| hypothetical protein VC0395_A1550 [Vibrio cholerae O395] gi|227013861|gb|ACP10071.1| conserved hypothetical protein [Vibrio cholerae O395] gi|229337561|gb|EEO02578.1| hypothetical protein VCA_001559 [Vibrio cholerae bv. albensis VL426] gi|229343645|gb|EEO08620.1| hypothetical protein VCC_002983 [Vibrio cholerae RC9] gi|229351784|gb|EEO16725.1| hypothetical protein VCE_003228 [Vibrio cholerae B33] gi|229355450|gb|EEO20371.1| hypothetical protein VCF_003177 [Vibrio cholerae BX 330286] gi|229370145|gb|ACQ60568.1| hypothetical protein VCD_002402 [Vibrio cholerae MJ-1236] gi|254844755|gb|EET23169.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255737115|gb|EET92511.1| hypothetical protein VCH_001631 [Vibrio cholera CIRS 101] gi|262023643|gb|EEY42344.1| hypothetical protein VIJ_001090 [Vibrio cholerae RC27] gi|262030187|gb|EEY48831.1| hypothetical protein VIG_001228 [Vibrio cholerae INDRE 91/1] gi|297537067|gb|EFH75900.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 291 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 87/219 (39%), Gaps = 28/219 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F +F +R L K G+ + +S + ++ N+ Sbjct: 98 ILIMGLIAFVIFKLMRAFLASKQGS----INQSQQQPAYSGMNRTPF-------EQPNVH 146 Query: 73 SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + +G + D+ Y FD F+N AR Y + ++ ++ I + V Sbjct: 147 NFEQPQSMGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 206 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 +++D L ++N + + + V D +I+ A + N ++++ G++ A Sbjct: 207 SPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 260 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I + + D+W R++ N W+++ + Sbjct: 261 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 290 >gi|262276258|ref|ZP_06054067.1| hypothetical protein VHA_003243 [Grimontia hollisae CIP 101886] gi|262220066|gb|EEY71382.1| hypothetical protein VHA_003243 [Grimontia hollisae CIP 101886] Length = 295 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 83/218 (38%), Gaps = 24/218 (11%) Query: 14 LLFAFITFFVFLQLRGVLGKKTGN-EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 L+ A I F +F + ++ K G+ +P ++G K+ G ++ Sbjct: 101 LIIALIAFVLFKIFKSLMAAKNGSINRPHQQAYAGNPSPQKK--------GYYHEQPQFR 152 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 G + +FD F+N AR Y + ++ ++ I++ V Sbjct: 153 ESAATSSTGGFGAVNNDVPFNFPPNFDMSAFVNGAREHYRTLQGAWNHNELETIQEYVTP 212 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 +Y D R+ + + ++ + D +I+ A + ++++ G++ D+ Sbjct: 213 ELYNDLA---EERRKLDGEQHTEVMYV-DAEIVRADYDGKRAQLSLQFSGRY----CDRH 264 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 I D + DIW R++ N W+++ + Sbjct: 265 -EGIEED------ITDIWHLERDMTLPNAPWLIVGIQA 295 >gi|327484501|gb|AEA78908.1| hypothetical protein VCLMA_A1705 [Vibrio cholerae LMA3894-4] Length = 291 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 87/219 (39%), Gaps = 28/219 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F +F +R L K G+ + +S + ++ N+ Sbjct: 98 ILIMGLIAFVIFKLMRAFLASKQGS----INQSQQQPAYSGMNRTPF-------EQPNVH 146 Query: 73 SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + +G + D+ Y FD F+N AR Y + ++ ++ I + V Sbjct: 147 NFEQPQSMGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 206 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 +++D L ++N + + + V D +I+ A + N ++++ G++ A Sbjct: 207 SPSLFED----LKAERANYEGDQHTNVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 260 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I + + D+W R++ N W+++ + Sbjct: 261 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 290 >gi|59712270|ref|YP_205046.1| Tim44-like domain-contain protein [Vibrio fischeri ES114] gi|59480371|gb|AAW86158.1| Tim44-like domain family [Vibrio fischeri ES114] Length = 297 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 85/219 (38%), Gaps = 20/219 (9%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ A I F +F R ++ K G+ G + + + + D Sbjct: 98 ILIMAGIAFILFKVFRSMMAAKAGSMNQRQGAAYAGPQGQQDAQPSFRDNQQYFQADQAT 157 Query: 73 SINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 + P G D+ Y FD + F+N +R Y + ++ ++ I++ V Sbjct: 158 A----QPTGGFGAASADDVPHNYPPGFDMQAFINGSREHYRILQGAWNHNQLETIQEYVS 213 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 +Y D + R + E + ++ + D +++ A + N ++++ G++ A Sbjct: 214 ISLYNDL---VQERATLEGEQHTDVMYV-DAEVVRADYDANRAQLSLQFSGRYRDAV--- 266 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 I D + DIW R++ N W++I + Sbjct: 267 --EGIEED------ITDIWHLERDLTQPNAPWLIIGIQA 297 >gi|153826379|ref|ZP_01979046.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|149739857|gb|EDM54048.1| conserved hypothetical protein [Vibrio cholerae MZO-2] Length = 223 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 87/219 (39%), Gaps = 28/219 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F +F +R L K G+ + +S + ++ N+ Sbjct: 30 ILIMGLIAFVIFKLMRAFLASKQGS----INQSQQQPAYSGMNRTPF-------EQPNVH 78 Query: 73 SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + +G + D+ Y FD F+N AR Y + ++ ++ I + V Sbjct: 79 NFEQPQSMGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 138 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 +++D L ++N + + + V D +I+ A + N ++++ G++ A Sbjct: 139 SPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 192 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I + + D+W R++ N W+++ + Sbjct: 193 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 222 >gi|153820281|ref|ZP_01972948.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126509172|gb|EAZ71766.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] Length = 239 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 87/219 (39%), Gaps = 28/219 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F +F +R L K G+ + +S + ++ N+ Sbjct: 46 ILIMGLIAFVIFKLMRAFLASKQGS----INQSQQQPAYSGMNRTPF-------EQPNVH 94 Query: 73 SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + +G + D+ Y FD F+N AR Y + ++ ++ I + V Sbjct: 95 NFEQPQSMGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 154 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 +++D L ++N + + + V D +I+ A + N ++++ G++ A Sbjct: 155 SPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRDAV-- 208 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I + + D+W R++ N W+++ + Sbjct: 209 ---EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 238 >gi|197334926|ref|YP_002156484.1| import inner membrane translocase, subunit Tim44 [Vibrio fischeri MJ11] gi|197316416|gb|ACH65863.1| import inner membrane translocase, subunit Tim44 [Vibrio fischeri MJ11] Length = 297 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 84/219 (38%), Gaps = 20/219 (9%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ A I F +F R ++ K G+ G + + + + D Sbjct: 98 ILIMAGIAFILFKVFRSMMAAKAGSMNQRQGAAYAGPQGQQDAQPSFRDNQQYFQADQAT 157 Query: 73 SINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 P G D+ Y FD + F+N +R Y + ++ ++ I++ V Sbjct: 158 ----TQPTGGFGAASADDVPHNYPPGFDMQSFINGSREHYRILQGAWNHNQLETIQEYVS 213 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 +Y D + R + E + ++ + D +++ A + N ++++ G++ A Sbjct: 214 ISLYNDL---VQERATLEGEQHTDVMYV-DAEVVRADHDANRAQLSLQFSGRYRDAV--- 266 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 I D + DIW R++ N W++I + Sbjct: 267 --EGIEED------ITDIWHLERDLTQPNAPWLIIGIQA 297 >gi|269961023|ref|ZP_06175392.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834242|gb|EEZ88332.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 303 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 32/222 (14%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 IL+ I F +F +RG+LG K G ++P G + K+ Sbjct: 108 ILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNFEQQPNNTNAG 167 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 P FD F+N +R Y + ++ ++H IE Sbjct: 168 GFGGFGAQTDIPHNYP------------PGFDQAAFINGSREHYRILQGAWNHNQLHTIE 215 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 + V +++D + R + + ++ + D +I+ A + N ++++ G++ A Sbjct: 216 EYVSPSLFEDLK---AERAKLDGEQHTDVMYV-DAEIVRADYDANKAQLSLQFSGRYRDA 271 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 I + DIW R++ N W+++ + Sbjct: 272 E-----------EGIEEDIEDIWHLERDLTVPNAPWLIVGIQ 302 >gi|156973734|ref|YP_001444641.1| hypothetical protein VIBHAR_01439 [Vibrio harveyi ATCC BAA-1116] gi|156525328|gb|ABU70414.1| hypothetical protein VIBHAR_01439 [Vibrio harveyi ATCC BAA-1116] Length = 290 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 88/225 (39%), Gaps = 39/225 (17%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFSKR---DERGIITLGK 64 IL+ I F +F +RG+LG K G ++P G + K+ +++ G Sbjct: 96 ILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNFEQQPNTNAGG 155 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 + I +P FD F+N +R Y + ++ ++H Sbjct: 156 FGGFGSQTDIPHNYP----------------PGFDQAAFINGSREHYRILQGAWNHNQLH 199 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 IE+ V +++D + R + + ++ + D +I+ A + + ++++ G++ Sbjct: 200 TIEEYVSPSLFEDLK---AERAKLDGEQHTDVMYV-DAEIVRADYDASKAQLSLQFSGRY 255 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A I + DIW R++ N W+++ + Sbjct: 256 RDAE-----------EGIEEDIEDIWHLERDLTVPNAPWLIVGIQ 289 >gi|90410802|ref|ZP_01218817.1| hypothetical protein P3TCK_27197 [Photobacterium profundum 3TCK] gi|90328433|gb|EAS44731.1| hypothetical protein P3TCK_27197 [Photobacterium profundum 3TCK] Length = 300 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 85/222 (38%), Gaps = 33/222 (14%) Query: 13 ILLFAFITFFVFLQL----RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 IL+F I FV +L RG G TG+ + S + + + + + ++ Sbjct: 108 ILIFGLIA-FVIFKLFKTMRGAKGTPTGH-REAYAGNSPQQQNNTQQRQQASEMNAAPQQ 165 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 S + P +F+ FL+ AR+ Y + ++ ++ I + Sbjct: 166 SGYASTDSDVPFNLP------------PNFNMNAFLSGARDHYRILQGAWNHNELDKIRE 213 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 V + D + R E + ++ + D +++ A + N ++I+ G++ Sbjct: 214 YVSPALLADLT---AERAKLEGEQHTEVMYV-DTEMVRADFDANLAQLSIQFSGRY---- 265 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D++ E + D+W R++ N W+++ + Sbjct: 266 KDRNE-------EHEADITDVWHLERDLRTPNAPWLIVGIQA 300 >gi|54309778|ref|YP_130798.1| hypothetical protein PBPRA2617 [Photobacterium profundum SS9] gi|46914216|emb|CAG20996.1| conserved hypothetical protein [Photobacterium profundum SS9] Length = 289 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 85/222 (38%), Gaps = 33/222 (14%) Query: 13 ILLFAFITFFVFLQL----RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 IL+F I FV +L RG G TG+ + S + + + + + ++ Sbjct: 97 ILIFGLIA-FVIFKLFKTMRGAKGTPTGH-REAYAGNSPQQQNNTQQRQQAPEMNAAPQQ 154 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 S + P +F+ FL+ AR+ Y + ++ ++ I + Sbjct: 155 SGYASTDSDVPFNLP------------PNFNMNAFLSGARDHYRILQGAWNHNELDKIRE 202 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 V + D + R E + ++ + D +++ A + N ++I+ G++ Sbjct: 203 YVSPALLADLT---AERAKLEGEQHTEVMYV-DTEMVRADFDANLAQLSIQFSGRY---- 254 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D++ E + D+W R++ N W+++ + Sbjct: 255 KDRNE-------EHEADITDVWHLERDLRTPNAPWLIVGIQA 289 >gi|117923796|ref|YP_864413.1| import inner membrane translocase, subunit Tim44 [Magnetococcus sp. MC-1] gi|117607552|gb|ABK43007.1| import inner membrane translocase, subunit Tim44 [Magnetococcus sp. MC-1] Length = 331 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 86/217 (39%), Gaps = 5/217 (2%) Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT----LGKGKKKDNLDSIN 75 VF ++ +G + ++ G Y ++ + + +G + + Sbjct: 116 AAGVFFLVKRFMGTRPPADEAAYARSHGAYRPQPQEMDQPMQREMHMPQGLPMGSGSDVE 175 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 + R + + +++ ++FD F++ A+ +E + S+ + ++ L+ ++ Sbjct: 176 DFSAQDER-QQTLDRLLAEDSNFDEFTFIDGAKRCFEMLQTSWSTFDMTTLQGLLTPQMM 234 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 ++ + ++N + V + ++ A E+ Y+T+R + D + Sbjct: 235 EEVENHARQLQANGQRDVVKNVHFSEAALVEAWSEQGQDYLTVRFDVSLVEYVEDASGQV 294 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +S D +V + W F R NPNW L + + + Sbjct: 295 VSGDANHPQQVQEFWVFTRAQGARNPNWQLSAIQQAQ 331 >gi|330446574|ref|ZP_08310226.1| tim44-like domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490765|dbj|GAA04723.1| tim44-like domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 290 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 83/222 (37%), Gaps = 32/222 (14%) Query: 13 ILLFAFITFFVFLQL----RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 IL+ I FV +L R G G+ + ++G + ++ R + Sbjct: 97 ILIIGVIA-FVLFKLFKAMRANKGTPMGHRESYAGNSPQQPQQPQQQYRQAAGAQSQPQN 155 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 +S + P +F+ FL+ +R+ Y I ++ ++ I + Sbjct: 156 GGFESTDSDVPFNLP------------PNFNMNAFLSGSRDHYRIIQGAWNHNELEKIRE 203 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 V ++ D + R + ++ + D +++ A + NT ++I+ G++ + Sbjct: 204 YVSPALFADLE---AERAKLSGEQHTEVMYV-DAELVRADYDANTAQLSIKFSGRYKDSV 259 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + D + D+W R++ N W+++ + Sbjct: 260 -----EGVEED------ITDVWHLERDLKTPNAPWLIVGIQA 290 >gi|269102148|ref|ZP_06154845.1| hypothetical protein VDA_001568 [Photobacterium damselae subsp. damselae CIP 102761] gi|268162046|gb|EEZ40542.1| hypothetical protein VDA_001568 [Photobacterium damselae subsp. damselae CIP 102761] Length = 272 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 82/221 (37%), Gaps = 35/221 (15%) Query: 13 ILLFAFITFFVFLQLRGVL---GKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 IL+ I F +F L+G+ G G+ + ++G + + R Sbjct: 84 ILIIGVIAFVIFKLLKGMRANKGTPMGHREAYAGNSPQQRNQQQAQFRQAANGASTGFSP 143 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + D + P +F+ FLN +R Y I +++ + + I + Sbjct: 144 DSD-VPFNLP----------------PNFNLNAFLNGSREHYRTIQEAWNKNDLAKIREY 186 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V + D ++ R + ++ + D +++ A + N ++I+ G++ Sbjct: 187 VSPALLNDL---MAERAKLNGEQHTEVMYV-DAEVVRADYDANMAQLSIQFSGRY----K 238 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D + D + D+W R++ N W+++ + Sbjct: 239 DSH-EGVEED------ITDVWHLERDLRTPNAPWLIVGIQA 272 >gi|260773108|ref|ZP_05882024.1| hypothetical protein VIB_001575 [Vibrio metschnikovii CIP 69.14] gi|260612247|gb|EEX37450.1| hypothetical protein VIB_001575 [Vibrio metschnikovii CIP 69.14] Length = 289 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 87/218 (39%), Gaps = 29/218 (13%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+F I F +F R L K G+ P ++ + + +++ Sbjct: 99 ILIFGLIGFALFKLARHFLAGKQGSLNPRQPAYNTNVHRQ--------SFEQAPEQE--- 147 Query: 73 SINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 + + + D+ Y FD F+N +R Y + ++ ++ IE+ V Sbjct: 148 --FKPAASSGFGSTMHNDVPHNYPPGFDKIAFINGSREHYRILQGAWNHNQLETIEEYVS 205 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 ++ D + R+ ++ ++ ++ + D +I+ A ++ ++++ G+ Sbjct: 206 QSLFSDLK---AEREKLDQQPQTEVMYV-DAEIVRADYDDRKAQLSLQFTGRCRDL---- 257 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 D E +++DIW R++ N W+++ + Sbjct: 258 ------GD-ETEEEILDIWHLERDLTQPNAPWLIVGIQ 288 >gi|153002504|ref|YP_001368185.1| import inner membrane translocase subunit Tim44 [Shewanella baltica OS185] gi|151367122|gb|ABS10122.1| import inner membrane translocase subunit Tim44 [Shewanella baltica OS185] Length = 287 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 85/221 (38%), Gaps = 30/221 (13%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---SKRDERGIITLGKGKKKD 69 IL+ + F +F +R V+ KTG ++ + +G+ ++ E+ + + Sbjct: 94 ILIIGLLAFVIFKIVRTVMASKTGAQQRPAYAGAGQPNPNMQRQQTEQTGFAINTNSGSN 153 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 P FD FL AR+ Y+ + ++ E + I++ Sbjct: 154 GFGQATSAVPFDLPA------------GFDLPGFLEGARSHYKTLQLAWNENDLSKIQEY 201 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V +Y + ++ R+ + + V D +++ A+ N ++++ G++ Sbjct: 202 VSIDLYNELSN--QRRELVGD--QHTEVMFLDAELVRATHNANLAEVSVKFSGRYRDTV- 256 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + D + +IW RN+ +N W+++ + Sbjct: 257 ----EGVEED------IKEIWHLERNVTQANSPWLIVGIEQ 287 >gi|90579259|ref|ZP_01235069.1| hypothetical protein VAS14_06118 [Vibrio angustum S14] gi|90440092|gb|EAS65273.1| hypothetical protein VAS14_06118 [Vibrio angustum S14] Length = 291 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 84/223 (37%), Gaps = 33/223 (14%) Query: 13 ILLFAFITFFVFLQL----RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL-GKGKK 67 IL+ I FV +L R G G+ + ++G + + + T + Sbjct: 97 ILIIGVIA-FVLFKLFKAMRANKGTPMGHRESYAGNSPRQQPQQAQQQYRQATGSQSQPQ 155 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 +S + P +F+ FL+ +R+ Y I ++ ++ I+ Sbjct: 156 NGGFESTDSDVPFNLP------------PNFNMNAFLSGSRDHYRIIQGAWNHNELAKIK 203 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 + V ++ D + R + ++ + D +++ A + N+ ++I+ G++ Sbjct: 204 EYVSPALFADLQ---AERAKLSGEQHTEVMYV-DAELVRADYDANSAQLSIKFSGRY--- 256 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D I D + D+W R++ N W+++ + Sbjct: 257 -KDTQ-EGIEED------INDVWHLERDLKTPNAPWLIVGIQA 291 >gi|89073249|ref|ZP_01159779.1| hypothetical protein SKA34_19790 [Photobacterium sp. SKA34] gi|89050959|gb|EAR56423.1| hypothetical protein SKA34_19790 [Photobacterium sp. SKA34] Length = 291 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 85/222 (38%), Gaps = 31/222 (13%) Query: 13 ILLFAFITFFVFLQLRGVL---GKKTGNEKPFSGFFSGKYVFSKRDERGIITL-GKGKKK 68 IL+ I F +F + + G G+ + ++G + + + T + Sbjct: 97 ILIIGVIAFVLFKLFKAMRTNKGTSMGHRESYAGNSPRQQPQQAQQQYRQATGSQSQPQN 156 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 +S + P +F+ FL+ +R+ Y I ++ ++ I++ Sbjct: 157 GGFESTDSDVPFNLP------------PNFNMNSFLSGSRDHYRIIQGAWNHNELAKIKE 204 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 V S ++ D + R + ++ + D +++ A + N+ ++I+ G++ Sbjct: 205 YVSSALFADLQ---AERAKLSGEQHTEVMYV-DAELVRADYDANSAQLSIQFSGRY---- 256 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D I D + D+W R++ N W+++ + Sbjct: 257 KDSQ-EGIEED------INDVWHLERDLKTPNAPWLIVGIQA 291 >gi|209694565|ref|YP_002262493.1| putative transport protein [Aliivibrio salmonicida LFI1238] gi|208008516|emb|CAQ78689.1| putative transport protein [Aliivibrio salmonicida LFI1238] Length = 316 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 84/219 (38%), Gaps = 18/219 (8%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 I++ A + F +F R + K G+ G S ++ + + D Sbjct: 115 IIIMAGVAFVLFKLFRMFMASKAGSINQRQGAAYAGPQASHDEKPSFRDNQQYFQGDQAQ 174 Query: 73 SINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 + G + ++ Y FD + F+N +R Y + ++ ++ I++ V Sbjct: 175 PQTQT--TGGFGSIGSDEVPHNYPPGFDLQGFINGSREHYRILQGAWNHNQLETIQEYVS 232 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 +Y D ++N + + + V D +++ A ++ ++++ G++ D Sbjct: 233 ISLYNDLVQE----RANLEGEQHTDVMFVDAEVVRAEHNASSAQLSLQFSGRY----RDS 284 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + E + D+W R++ N W++I + Sbjct: 285 ----VEGLQE---DITDVWHLERDLTQPNAPWLIIGIQA 316 >gi|146294690|ref|YP_001185114.1| import inner membrane translocase subunit Tim44 [Shewanella putrefaciens CN-32] gi|145566380|gb|ABP77315.1| import inner membrane translocase, subunit Tim44 [Shewanella putrefaciens CN-32] gi|319427926|gb|ADV56000.1| import inner membrane translocase subunit Tim44 [Shewanella putrefaciens 200] Length = 291 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 87/219 (39%), Gaps = 22/219 (10%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFS-KRDERGIITLGKGKKKDNL 71 IL+ + F +F +R V+ K G + + +G+ + +R + + Sbjct: 94 ILIIGLLAFVLFKIVRTVMASKAGAQPRPAYAGAGQPSPNLQRQQTEQTGFASNATNNAN 153 Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 + + + + + FD FL AR+ Y+ + ++ E + I++ V Sbjct: 154 SGSHGVAQAASDVPFNLPA------GFDLPSFLEGARSHYKTLQLAWNENDLSKIQEYVS 207 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 ++ + ++ R+ + + + V D +++ A+ N ++++ G++ Sbjct: 208 IELFNELSN--QRRELVGE--QHTEVMFLDAELVRATHTANLAEVSVKFSGRYRDTV--- 260 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + D + ++W RN+ +N W+++ + Sbjct: 261 --ECVEED------IKEVWHLERNVAQANSPWLIVGIEQ 291 >gi|304412224|ref|ZP_07393833.1| import inner membrane translocase subunit Tim44 [Shewanella baltica OS183] gi|307306968|ref|ZP_07586708.1| import inner membrane translocase subunit Tim44 [Shewanella baltica BA175] gi|304349490|gb|EFM13899.1| import inner membrane translocase subunit Tim44 [Shewanella baltica OS183] gi|306910546|gb|EFN40976.1| import inner membrane translocase subunit Tim44 [Shewanella baltica BA175] Length = 287 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 87/220 (39%), Gaps = 28/220 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ + F +F +R V+ K G ++ + +G+ + + +++ Sbjct: 94 ILIIGLLAFVLFKIVRTVMASKAGAQQRPAYAGAGQPNPNMQ-----------RQQAEQT 142 Query: 73 SINELFPIGTR-LNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 G+ + + FD FL AR+ Y+ + ++ E + I++ V Sbjct: 143 GFATNANSGSNGFGQATSAVPFDLPAGFDLPGFLEGARSHYKTLQLAWNENDLSKIQEYV 202 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 +Y + ++ R+ + + V D +++ A+ N ++++ G++ Sbjct: 203 SIDLYNELSN--QRRELVGD--QHTEVMFLDAELVRATHNANLAEVSVKFSGRYR----- 253 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + E ++ +IW RN+ +N W+++ + Sbjct: 254 ---DTVEGVEE---EIKEIWHLERNVTQANSPWLIVGIEQ 287 >gi|304311556|ref|YP_003811154.1| hypothetical protein HDN1F_19260 [gamma proteobacterium HdN1] gi|301797289|emb|CBL45509.1| Hypothetical protein HDN1F_19260 [gamma proteobacterium HdN1] Length = 324 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 76/228 (33%), Gaps = 25/228 (10%) Query: 13 ILLFAFITFFVFLQLR---------GVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 IL+FA + F +F LR + G G + + + +G Sbjct: 111 ILIFALLGFVIFKLLRRRQQQRATPAMAGAGGGRFDVPEPANAPQERRTFDLGNPDEKVG 170 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGK 122 S + T + FD FL AR Y I +++ +G Sbjct: 171 AAAASAPAFSPSAAAATDTLGWGNETSVPFNLPAGFDMNSFLTGAREHYRTIQEAWNKGN 230 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + + + + ++ + + R + + + V D +++ A +++R G Sbjct: 231 LETLREYLAPELFDALS---AERATLKGEQHTE-VMFVDAELVRADQNATLAEVSLRFSG 286 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ + + + D+W R++ + W+++ + Sbjct: 287 RYRDQT--------EGVEDA---ITDVWHLERDLSKPDQPWLIVGIEE 323 >gi|217975072|ref|YP_002359823.1| import inner membrane translocase subunit Tim44 [Shewanella baltica OS223] gi|217500207|gb|ACK48400.1| import inner membrane translocase subunit Tim44 [Shewanella baltica OS223] Length = 287 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 87/220 (39%), Gaps = 28/220 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ + F +F +R V+ K G ++ + +G+ + + +++ Sbjct: 94 ILIIGLLAFVLFKIVRTVMASKAGAQQRPAYAGAGQPNPNMQ-----------RQQAEQT 142 Query: 73 SINELFPIGTR-LNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 G+ + + FD FL AR+ Y+ + ++ E + I++ V Sbjct: 143 GFATNANSGSNGFGQAKSAVPFDLPAGFDLPGFLEGARSHYKTLQLAWNENDLIKIQEYV 202 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 +Y + ++ R+ + + V D +++ A+ N ++++ G++ Sbjct: 203 SIELYNELSN--QRRELVGD--QHTEVMFLDAELVRATHNANLAEVSVKFSGRYR----- 253 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + E ++ +IW RN+ +N W+++ + Sbjct: 254 ---DTVEGVEE---EIKEIWHLERNVTQANSPWLIVGIEQ 287 >gi|160877221|ref|YP_001556537.1| import inner membrane translocase subunit Tim44 [Shewanella baltica OS195] gi|160862743|gb|ABX51277.1| import inner membrane translocase subunit Tim44 [Shewanella baltica OS195] gi|315269425|gb|ADT96278.1| import inner membrane translocase subunit Tim44 [Shewanella baltica OS678] Length = 287 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 83/221 (37%), Gaps = 30/221 (13%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF---SKRDERGIITLGKGKKKD 69 IL+ + F +F +R V+ K G ++ + +G+ ++ E+ + Sbjct: 94 ILIIGLLAFVLFKIVRTVMASKAGAQQRPAYAGAGQPNPNMQRQQTEQTGFATNTNSGSN 153 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 P FD FL AR+ Y+ + ++ E + I++ Sbjct: 154 GFGQATSAVPFDLPA------------GFDLPSFLEGARSHYKTLQLAWNENDLSKIQEY 201 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V +Y + ++ R+ + + V D +++ A+ N ++++ G++ Sbjct: 202 VSIELYNELSN--QRRELVGD--QHTEVMFLDAELVRATHNANLAEVSVKFSGRYRDTV- 256 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + D + +IW RN+ +N W+++ + Sbjct: 257 ----EGVEED------IKEIWHLERNVTQANSPWLIVGVEQ 287 >gi|126176210|ref|YP_001052359.1| import inner membrane translocase subunit Tim44 [Shewanella baltica OS155] gi|125999415|gb|ABN63490.1| import inner membrane translocase, subunit Tim44 [Shewanella baltica OS155] Length = 287 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 85/220 (38%), Gaps = 28/220 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ + F +F +R V+ K G ++ + +G+ + + +++ Sbjct: 94 ILIIGLLAFVLFKIVRTVMASKAGAQQRPAYAGAGQPNPNMQ-----------RQQAEQT 142 Query: 73 SINELFPIGTR-LNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 G+ + + FD FL AR+ Y+ + ++ E + I++ V Sbjct: 143 GFATNANSGSNGFGQATSAVPFDLPAGFDLPGFLEGARSHYKTLQLAWNENDLRKIQEYV 202 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 +Y + ++ R+ + + V D +++ A+ N ++++ G++ Sbjct: 203 SIDLYNELSN--QRRELVGD--QHTEVMFLDAELVRATHNANLAEVSVKFSGRYRDTV-- 256 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + D + +IW RN+ N W+++ + Sbjct: 257 ---EGVEED------IKEIWHLERNVTQVNSPWLIVGIEQ 287 >gi|24375821|ref|NP_719864.1| hypothetical protein SO_4340 [Shewanella oneidensis MR-1] gi|24350775|gb|AAN57308.1|AE015867_7 conserved hypothetical protein [Shewanella oneidensis MR-1] Length = 291 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 84/218 (38%), Gaps = 24/218 (11%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ A + F +F +R V+ K + ++G + +R N Sbjct: 98 ILIIALLAFVLFKIVRTVMASKASAQ--PRPAYAGAGQPNPNLQRQQAEQTGFASSAN-S 154 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 N + + + FD FL AR+ Y+ + ++ E + I++ V Sbjct: 155 GSNGFAQAASTVPFHLPA------GFDLPGFLEGARSHYKTLQVAWNENDLSKIQEYVSI 208 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 +Y + ++ R+ + + + V D +++ A+ N ++++ G++ Sbjct: 209 ELYNELSN--QRRELVGE--QHTEVMFLDAELVRATHNANLAEVSVKFSGRYRDTV---- 260 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + D + +IW RN+ +N W+++ + Sbjct: 261 -EGVEED------IKEIWHLERNLTQANAPWLIVGIEQ 291 >gi|120600531|ref|YP_965105.1| import inner membrane translocase subunit Tim44 [Shewanella sp. W3-18-1] gi|120560624|gb|ABM26551.1| import inner membrane translocase, subunit Tim44 [Shewanella sp. W3-18-1] Length = 291 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 88/220 (40%), Gaps = 24/220 (10%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ + F +F +R V+ K G + + +G+ + + + + ++ Sbjct: 94 ILIIGLLAFVLFKIVRTVMASKAGAQPRPAYAGAGQPNPNFQRQ-------QAEQTGFAS 146 Query: 73 SINELFPIGT-RLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + G+ + D+ FD FL AR+ Y+ + ++ E + I++ V Sbjct: 147 NATNNANSGSHGFAQAASDVPFNLPAGFDLPGFLEGARSHYKTLQLAWNENDLSKIQEYV 206 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 ++ + ++ R+ + + V D +++ A+ N ++++ G++ Sbjct: 207 SIELFNELSN--QRRELVGD--QHTEVMFLDAELVRATHTANLAEVSVKFSGRYRDTV-- 260 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + D + ++W RN+ +N W+++ + Sbjct: 261 ---EGVEED------IKEVWHLERNVAQANSPWLIVGIEQ 291 >gi|119776251|ref|YP_928991.1| hypothetical protein Sama_3119 [Shewanella amazonensis SB2B] gi|119768751|gb|ABM01322.1| conserved hypothetical protein [Shewanella amazonensis SB2B] Length = 295 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 81/224 (36%), Gaps = 34/224 (15%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 I++ A + F +F +R + S + G +D Sbjct: 100 IVIIALLAFVLFKVIRML-------------MASKAQAQPRPAYSGAGQASTAPGQDLYR 146 Query: 73 SINELFPIGT-RLNKVMRDIVSV-----YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 E G N S FD FL AR Y+ + ++ EG ++ I Sbjct: 147 QQAEPAAFGGLGGNSGFAQPQSTVPFQLPPGFDLAAFLEGARGHYKTLQQAWNEGDLNKI 206 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 ++ V ++ + + R+ E + ++ + D +++ A+ ++++ G++ Sbjct: 207 QEYVSIELFNELSQ---QRRELEGQQHTEVMFL-DAELVRATYNNELAEVSVKFSGRYRD 262 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 A+ + D + ++W RN+ +N W+++ + Sbjct: 263 AA-----EGVEED------IKEVWHLERNLLQANSPWLIVGIQQ 295 >gi|218680118|ref|ZP_03528015.1| import inner membrane translocase subunit Tim44 [Rhizobium etli CIAT 894] Length = 78 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 44/72 (61%) Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN 220 +I +A + + IT+RI+ Q ISA+YDK ++LI D E +V D+WTF R+ + Sbjct: 6 KAEITHAETKGSEAQITVRIISQLISATYDKADVLIEGDAENVAEVNDLWTFARDTRSRD 65 Query: 221 PNWVLISTKLGE 232 PNW L++T+ Sbjct: 66 PNWKLVATESEH 77 >gi|78223134|ref|YP_384881.1| import inner membrane translocase subunit Tim44 [Geobacter metallireducens GS-15] gi|78194389|gb|ABB32156.1| import inner membrane translocase, subunit Tim44 [Geobacter metallireducens GS-15] Length = 322 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 70/180 (38%), Gaps = 3/180 (1%) Query: 52 SKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY 111 +++ R ++ ++ + P+ + + + + FD F A++ + Sbjct: 146 AQQTWRQAESVEPPPRQYGFGQTAQAAPVD-ETSFGLAHVRQMDGSFDENRFKETAQDIF 204 Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171 + ++ + + L+ + F + K+ + + + ++ I A EE Sbjct: 205 FRVQGAWTRRDLSPVADLLTPEMQVTFRQQIDELKAAGTINRLENISVREVNITEAWQEE 264 Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 Y+T+R++ + + D+ ++S K + WTF R + NP W L + + Sbjct: 265 GRDYLTVRLLASILDYTTDESGKVVSGSDSAPVKFEEYWTFSRPVG-PNP-WKLSAIQQA 322 >gi|330828529|ref|YP_004391481.1| Import inner membrane translocase subunit Tim44 [Aeromonas veronii B565] gi|328803665|gb|AEB48864.1| Import inner membrane translocase, subunit Tim44 [Aeromonas veronii B565] Length = 286 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 26/210 (12%), Positives = 73/210 (34%), Gaps = 32/210 (15%) Query: 21 FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPI 80 F+ LR GK +P ++G + + + F Sbjct: 108 VFLIRTLRK--GK-VATPQPQQAAYAGYQPPQSAAPQQFEQSNSAPQATGFADSDVPF-- 162 Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 + FD FL AR+ Y + +++ + + + + V +++ Sbjct: 163 ------------RLPPGFDMNSFLAGARDHYRTLQEAWNKNDLEKVREYVSPELFEQLK- 209 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + R + + ++ + D +++ A + +++R G+++ D+ + Sbjct: 210 --AERAELTGDQHTEVMYV-DTQLVRADYGSDWAQVSVRFSGRYM----DRQEQVEE--- 259 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + ++W R++ +N W ++ + Sbjct: 260 ----DIKEVWHLERDLAKNNAPWHIVGIEQ 285 >gi|320352867|ref|YP_004194206.1| import inner membrane translocase subunit Tim44 [Desulfobulbus propionicus DSM 2032] gi|320121369|gb|ADW16915.1| import inner membrane translocase subunit Tim44 [Desulfobulbus propionicus DSM 2032] Length = 313 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 75/225 (33%), Gaps = 12/225 (5%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 G +L+ + +F++ + +P + SG + Sbjct: 99 GILPLLILGGVGYFLYKRFVN---------RPAAPSSSGYQPPPAPNMFQGGGGQFAGNT 149 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 + + + +I + FD K FL A + + I + + + Sbjct: 150 VPPVPPIPPIRATNTMEQGLAEIRATDPGFDDKYFLEVASDVFFKIQAGWMRRDLSSYRH 209 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L+ ++ ++ + + + K + + ++II A + ++T+ + + Sbjct: 210 LLGQQLAAEYEQHFARMQELGQINKLESIAVRKVEIIAAGSDNGEDFVTVLFTANLLDYT 269 Query: 189 YD-KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D K L+ K + WT+ R + + W L ++ E Sbjct: 270 VDEKTGALVEGSMTEPIKFAEKWTWARPMRTED--WKLEGIEVVE 312 >gi|51246964|ref|YP_066848.1| hypothetical protein DP3112 [Desulfotalea psychrophila LSv54] gi|50878001|emb|CAG37841.1| hypothetical membrane protein [Desulfotalea psychrophila LSv54] Length = 274 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 83/217 (38%), Gaps = 13/217 (5%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ A +F+F + ++ G Y + G+ D Sbjct: 69 ILILAGGAYFLFRK----------FKQQSKGGKESAYTRPTATPSFGGGMNGGENTDVRP 118 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 F + L++ + I + DF+ + F+ A + + I + + + LV + Sbjct: 119 PPAPAFAGMSDLDEGIDQIKATDQDFEKEHFIQVASDVFFQIQAGWMRRDISSYRHLVGN 178 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY-DK 191 ++ +++ + K+ + K + + +++I A + ++T+R + + + DK Sbjct: 179 QLAEEYTSQFAKMKAAGRTNKLESIAVRSIEVIAAGSDGLEDFVTVRFIASLLDYTVDDK 238 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 ++ K + WT+ R++ + NW L Sbjct: 239 TGDIVEGSNTAPVKFEEEWTWARSVKTN--NWKLEGI 273 >gi|253699913|ref|YP_003021102.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M21] gi|251774763|gb|ACT17344.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M21] Length = 318 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 74/223 (33%), Gaps = 25/223 (11%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F ILL A I ++ ++ + + G + G + + Sbjct: 114 IFEILLLAGI-GYLIYRM----------------VKKRRSEAAALQGAGSYSYGGYEPQG 156 Query: 70 NLDSINE--LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 L P + + + + FD F ++ + + I + + A+ Sbjct: 157 AAIPAPYRVLEPSANDVATGLSHLRQMDPGFDEGRFNDQVMDHFFKIQGGWMNRDLAALS 216 Query: 128 KLVDSRVYQDFNDSLST--RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 LV + F D + R +++ + + ++I E Y+T I + Sbjct: 217 PLVTEEMKGIFRDDIDRLLRDRQVNRLEN--IAVRKVEIAEVWQEAGQDYVTALIYANLL 274 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + D++ +++ K ++WTF R + N W L Sbjct: 275 DYTTDENGQVVAGSKTEPVKFEELWTFARPVG--NNPWRLSGI 315 >gi|237807609|ref|YP_002892049.1| import inner membrane translocase subunit Tim44 [Tolumonas auensis DSM 9187] gi|237499870|gb|ACQ92463.1| import inner membrane translocase subunit Tim44 [Tolumonas auensis DSM 9187] Length = 286 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 76/225 (33%), Gaps = 41/225 (18%) Query: 10 DFLILLFAFITFFVFLQ-LRGVLGKKTGNEKPFSGFFSGK----YVFSKRDERGIITLGK 64 F ILL A + F+ + LR KP + +K+ + Sbjct: 96 IFDILLMAGVA-FLAFRFLRN--------RKPATAAGPQPAYGMPYQTKQSTESAFQKPE 146 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 + + P F+ +F+ A Y + ++ + Sbjct: 147 YAGNTSFSPATDTVPFDLP------------EGFNTAEFIKGACEHYRTLQVAWNDNDFS 194 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 I++ V ++ L ++N + + V D +++ A + N+ I++ G++ Sbjct: 195 KIQEYVTPELFN----ELKQERANYTGAQHTEVLYVDAELVRAERKINSAQISVLFKGRY 250 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + I D + ++W RN+ +N W+++ + Sbjct: 251 RDSV-----EGIEED------IHEVWHLERNLSSANAPWLIVGIE 284 >gi|149911555|ref|ZP_01900169.1| hypothetical protein PE36_11757 [Moritella sp. PE36] gi|149805400|gb|EDM65410.1| hypothetical protein PE36_11757 [Moritella sp. PE36] Length = 277 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 79/217 (36%), Gaps = 30/217 (13%) Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73 ++ A + F+ +L S++ + +++ D+ Sbjct: 91 IIMAGVA-FLLFRL--------------FKGMMQAKAASQQGSPQTASGPAFRQEAQPDA 135 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 G ++ DFD FL+ AR+ Y+ + ++ E + I++ V Sbjct: 136 TFNTASQGGFAGSSNDVPFNLPADFDLTSFLSGARSHYKTLQKAWNENDLETIQEYVSIE 195 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 +Y + RK E + ++ + D++++ A + ++++ G++ Sbjct: 196 LYNELR---VQRKELEGEQHTEVMFL-DVELVRAESTASLSQVSVKFNGRYR-------- 243 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ + ++W R++ ++ W++ + Sbjct: 244 ---DGHEDVEADINEVWHLERDLTQTDAPWLITGIEQ 277 >gi|117619732|ref|YP_855556.1| import inner membrane translocase, subunit Tim44 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561139|gb|ABK38087.1| import inner membrane translocase, subunit Tim44 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 284 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 63/185 (34%), Gaps = 16/185 (8%) Query: 46 SGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLN 105 GK ++ N P T + FD FL Sbjct: 115 KGKMAAPQQQTAYAGYQPPQSAAPQQFEQNHSAPQATGFADS-DVPFRLPPGFDMNGFLA 173 Query: 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165 AR+ Y + +++ + + + + V +++ + R + ++ + D +++ Sbjct: 174 GARDHYRTLQEAWNKNDLEKVREYVSPELFEQLK---AERAELTGEQHTEVMYV-DTQLV 229 Query: 166 NASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 A + +++R G+++ D+ + + ++W RN+ N W + Sbjct: 230 RADYGSDWAQVSVRFSGRYM----DRQEQVEE-------DIKEVWHLERNLAKDNAPWHI 278 Query: 226 ISTKL 230 + + Sbjct: 279 VGIEQ 283 >gi|322420322|ref|YP_004199545.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M18] gi|320126709|gb|ADW14269.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M18] Length = 322 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 77/219 (35%), Gaps = 13/219 (5%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F I+L A I ++ ++ V +++ E P +G G + + ++ Sbjct: 114 LFDIVLLAGI-CYLIYRM--VKKRRS--ETPLQSVSTGYGSQ------GYDSPQQYQENS 162 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 S P + + + + FD F + +++ I + + A+ L Sbjct: 163 IPASYRVDEPPQADIYTGISHLRQMDPGFDEARFKDLVMDNFFRIQGGWMNRDLQALSAL 222 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + + F + + + + + + + ++ E Y+T+ I + + Sbjct: 223 LTPEMQGVFREDIERLLRDGRVNRLENIAVRSVEFSEVWQEAGQDYVTVLIYANLLDYTT 282 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 D+ +++ K + WTF R + N W L Sbjct: 283 DEQGTVVAGSKTEPVKFEEHWTFTRPVG--NNPWRLSGI 319 >gi|307634800|gb|ADN78334.1| transport protein, Tim44-like domain, putative [Geobacter sulfurreducens KN400] Length = 321 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 24/190 (12%), Positives = 71/190 (37%), Gaps = 3/190 (1%) Query: 42 SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPK 101 + + R ++ E P + + + + F + Sbjct: 135 ASRRREAAATAGRAPDWSREEPVTPQQYRYGQPAESVPAAGA-DSGLAHVRQMDGSFSEE 193 Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDD 161 F A++ + + ++ + + +++ + + ++ K+ + + + + Sbjct: 194 QFRQLAQDVFFRVQGAWTRRDLSSAREVLAPEMERALQGDVAELKARGQVNRLENIAVRQ 253 Query: 162 MKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP 221 ++++ A EE + +IT+R + + + D++ ++S K + WTF R + NP Sbjct: 254 VELVEAWQEEGSDFITVRFLANLLDYTTDEEGRVLSGSDREPVKFEEFWTFTRPVG-PNP 312 Query: 222 NWVLISTKLG 231 W L + + Sbjct: 313 -WKLSAIQQA 321 >gi|39996193|ref|NP_952144.1| putative lipoprotein [Geobacter sulfurreducens PCA] gi|39982958|gb|AAR34417.1| lipoprotein, putative [Geobacter sulfurreducens PCA] Length = 321 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 71/193 (36%), Gaps = 3/193 (1%) Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF 98 + + + R ++ E P + + + + F Sbjct: 132 RFVASRRREAAATAGRAPDWSREEPVTPQQYRYGQPAESVPAAGA-DSGLAHVRQMDGSF 190 Query: 99 DPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG 158 + F A++ + + ++ + + +++ + + ++ K+ + + + Sbjct: 191 SEEQFRQLAQDVFFRVQGAWTRRDLSSAREVLAPEMERALQGDVAELKARGQVNRLENIA 250 Query: 159 IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP 218 + ++++ A EE +IT+R + + + D++ ++S K + WTF R + Sbjct: 251 VRQVELVEAWQEEGCDFITVRFLANLLDYTTDEEGRVLSGSDREPVKFEEFWTFTRPVG- 309 Query: 219 SNPNWVLISTKLG 231 NP W L + + Sbjct: 310 PNP-WKLSAIQQA 321 >gi|145300179|ref|YP_001143020.1| import inner membrane translocase [Aeromonas salmonicida subsp. salmonicida A449] gi|142852951|gb|ABO91272.1| predicted import inner membrane translocase [Aeromonas salmonicida subsp. salmonicida A449] Length = 280 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 22/188 (11%), Positives = 65/188 (34%), Gaps = 16/188 (8%) Query: 44 FFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIV-SVYTDFDPKD 102 F + + + + G + D+ + FD Sbjct: 107 FRAMRKSKAPSPQPQTAYAGYQPPSATPQQFEQSSSASQATGFADSDVPFRLPPGFDMNS 166 Query: 103 FLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDM 162 FL+ AR+ Y + +++ + + + V +++ + R + ++ + D Sbjct: 167 FLSGARDHYRTLQEAWNTNDLEKVREYVSPELFEQLK---AERAELTGEQHTEVMYV-DT 222 Query: 163 KIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222 +++ A + +++R G+++ D+ + + ++W RN+ N Sbjct: 223 QLVRADYGSDWAQVSVRFSGRYM----DRQEQVEE-------DIKEVWHLERNLAKDNAP 271 Query: 223 WVLISTKL 230 W ++ + Sbjct: 272 WHIVGIEQ 279 >gi|298498003|ref|ZP_07007810.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|297542336|gb|EFH78386.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 272 Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 74/179 (41%), Gaps = 17/179 (9%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F +F +R L K G+ + +S + ++ N+ Sbjct: 98 ILIMGLIAFVIFKLMRAFLASKQGS----INQSQQQPAYSGMNRTPF-------EQPNVH 146 Query: 73 SINELFPIGTRLNKVMR-DIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + +G + D+ Y FD F+N AR Y + ++ ++ I + V Sbjct: 147 NFEQPQSMGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETIREYV 206 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 +++D L ++N + + + V D +I+ A + N ++++ G++++ S Sbjct: 207 SPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRYVTLSK 261 >gi|114332328|ref|YP_748550.1| import inner membrane translocase, subunit Tim44 [Nitrosomonas eutropha C91] gi|114309342|gb|ABI60585.1| import inner membrane translocase, subunit Tim44 [Nitrosomonas eutropha C91] Length = 304 Score = 98.8 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 75/223 (33%), Gaps = 20/223 (8%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 IL+ A I +F +R + +++ G + +S + ++ Sbjct: 97 NMMDILVLAGIAAAIFFGIRMM--RRSS----GGGQAARPMQYSGAGAGHSMGGMPFPRQ 150 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 D + + D + + FD FL A+ S+ + + G + I Sbjct: 151 DTATPSGGVASGVGGQSAANTDALDIPAGFDVDSFLKNAKGSFITLQLAHDSGDLEEIRA 210 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 ++ + + ++ R + + V + +++ + ++N ++R G+ Sbjct: 211 FTTPELFAEISKQITER---GNVTQQTDVTHVNAALLDITTQDNHAVASVRFTGELR--- 264 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + +IW +++ S+ W+L + Sbjct: 265 --------EAPGAQLEPFDEIWHVEKDLVASDSAWLLSGIQQA 299 >gi|270005995|gb|EFA02443.1| hypothetical protein TcasGA2_TC008130 [Tribolium castaneum] Length = 421 Score = 98.0 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 65/174 (37%), Gaps = 3/174 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + + D + I T L++ + +I + FD K FL + + Sbjct: 236 ESDNPVIRASRLLTDKVSDIMGGLFQKTELSETLTEICKIDPTFDTKKFLKQCETDIIPN 295 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G + ++ + F + + S ++ +D++ ++ + E Sbjct: 296 ILEAMTRGDLEVLKDWCHEGPFNLFAIPIKEAYKKGYKIDSKVLDVDNVDLVMGKVMEQG 355 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 + I Q + D + ++ DPE +V +W R+I +P W L Sbjct: 356 PVLIISFTSQQMMCVRDPNGNVVEGDPEKVMRVAYVWVLCRDISEPDPRAAWRL 409 >gi|197119310|ref|YP_002139737.1| transport protein [Geobacter bemidjiensis Bem] gi|197088670|gb|ACH39941.1| transport protein, Tim44-like domain, putative [Geobacter bemidjiensis Bem] Length = 318 Score = 98.0 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 77/223 (34%), Gaps = 26/223 (11%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F ILL A I ++ ++ + + G + G +++ Sbjct: 115 IFEILLLAGI-GYLIYRM-----------------VKKRRSEAALQGAGSYSYGGYEQQG 156 Query: 70 NLDSINE--LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 S + P + + + + FD F + +++ I + + + Sbjct: 157 ATISAPYRVIEPSYNDVATGLSHLRQMDPGFDEGRFNDLVMDNFFKIQGGWMNRDLAVLA 216 Query: 128 KLVDSRVYQDFNDSLST--RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 LV + F D + R +++ + + +++I E Y+T RI + Sbjct: 217 PLVTEEMKGIFRDDIDRLLRDRQVNRLEN--IAVRNVEITEVWQEAGQDYVTARIYANLL 274 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + D++ +I+ K ++WTF R + N W L Sbjct: 275 DYTTDENGQVITGSKTEPVKFEELWTFARPVG--NNPWRLSGI 315 >gi|189236504|ref|XP_975336.2| PREDICTED: similar to mitochondrial import inner membrane translocase subunit tim44 [Tribolium castaneum] Length = 424 Score = 98.0 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 65/174 (37%), Gaps = 3/174 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + + D + I T L++ + +I + FD K FL + + Sbjct: 239 ESDNPVIRASRLLTDKVSDIMGGLFQKTELSETLTEICKIDPTFDTKKFLKQCETDIIPN 298 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G + ++ + F + + S ++ +D++ ++ + E Sbjct: 299 ILEAMTRGDLEVLKDWCHEGPFNLFAIPIKEAYKKGYKIDSKVLDVDNVDLVMGKVMEQG 358 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 + I Q + D + ++ DPE +V +W R+I +P W L Sbjct: 359 PVLIISFTSQQMMCVRDPNGNVVEGDPEKVMRVAYVWVLCRDISEPDPRAAWRL 412 >gi|255641370|gb|ACU20962.1| unknown [Glycine max] Length = 181 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 59/154 (38%), Gaps = 9/154 (5%) Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 +L T + F NEA N Y+ I +G + K V ++ + + Sbjct: 17 QLKSAYAIAKLRKTGYSKNQFYNEAANMYKEINTLIAKGDKRTLRKAVTENMFSALKNEI 76 Query: 143 STRKSNEKNVKSSLVG-IDDMKIINA--------SIEENTVYITIRIVGQFISASYDKDN 193 R++ V +V + ++ + A + + + +T+ I+ + +YD Sbjct: 77 KQRETAWSRVYWEMVEPVVKIRTLRARLIGVDRKDLNKTFIQLTLEILAKQKFEAYDSKG 136 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 +++ D V DIW F +++ + W L Sbjct: 137 SVVAGDKSKEVLVRDIWVFEKSMFHAGATWRLCG 170 >gi|328952110|ref|YP_004369444.1| import inner membrane translocase subunit Tim44 [Desulfobacca acetoxidans DSM 11109] gi|328452434|gb|AEB08263.1| import inner membrane translocase subunit Tim44 [Desulfobacca acetoxidans DSM 11109] Length = 333 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 77/225 (34%), Gaps = 24/225 (10%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 G F IL+ I L LG + N + SG + + Sbjct: 130 GLFEILIIGGI-------LY--LGYRLLNRRRQQAHQSGGGGGKTYGATLLYPEPAAPQL 180 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 D EL P I + F+ F ++ + + ++ +V ++ Sbjct: 181 PAFDLQTELEP-----------IRRMDPSFNEATFKEMVQDVFFKLQGAWMRQEVSSMRD 229 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L Y + L K+ + K + + ++I A E+ +IT+ + + + Sbjct: 230 LTTPEFYDILDKELQELKAKGQINKLENIAVRQVEISEAWQEQGQDFITVGFLANLLDYT 289 Query: 189 YDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS-TKLG 231 D N +++ K + WTFVR I W L + T+ G Sbjct: 290 VDAGTNQVLAGSDTEPVKFEEYWTFVRPIGNG--PWKLTAITQPG 332 >gi|85860629|ref|YP_462831.1| transporter [Syntrophus aciditrophicus SB] gi|85723720|gb|ABC78663.1| transporter [Syntrophus aciditrophicus SB] Length = 338 Score = 96.1 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 4/160 (2%) Query: 71 LDSINELFPI-GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 I ++ P G + I + FD + F + + + I ++ + + L Sbjct: 177 APPIQDIPPASGYEGGGGLDAIRQMDYQFDERRFKDSVLDHFFQIQGAWAGRDMSGVRNL 236 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + V + T ++ ++ K + + + I A E +IT++ + + Sbjct: 237 LTDEVCKTIQQDAETLRAKKRINKLDNIAVRSVDITEAWQEGGQDFITVKFYANLLDYTI 296 Query: 190 DKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 D+ ++S K ++ WTF R N W L + Sbjct: 297 DEASGEVVSGSRTEPVKFVEFWTFTRPTG--NNPWRLSAV 334 >gi|30250392|ref|NP_842462.1| hypothetical protein NE2471 [Nitrosomonas europaea ATCC 19718] gi|30181187|emb|CAD86383.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718] Length = 304 Score = 95.7 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 78/229 (34%), Gaps = 32/229 (13%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 IL+ I +F +R + G G + ++R + G Sbjct: 99 NMMDILVLVGIAAAIFFIIRMMRGSAGGRQ-------------TQRPMQYSGAGAGGMGG 145 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYT-----DFDPKDFLNEARNSYEAIVDSFFEGKV 123 + + P G + R S DFD + FL +A+ S+ A+ + G + Sbjct: 146 VPFPNRDTSAPAGGASSGYDRQSTSTDAPDIPADFDVESFLKQAKRSFIALQLAHDAGDL 205 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 I ++ + + ++ R + + V D +++ + + N ++R G+ Sbjct: 206 EEIRAYTTPDLFAEISKQVAERGNMAQQTDVIFV---DAALLDVTNQGNHAIASVRFTGE 262 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + + +IW +++ S+ W+L + + Sbjct: 263 LRD-TPNAQPEPFD----------EIWHVEKDLAASDSGWLLAGIQQAD 300 >gi|332534647|ref|ZP_08410479.1| hypothetical protein PH505_bn00240 [Pseudoalteromonas haloplanktis ANT/505] gi|332035927|gb|EGI72408.1| hypothetical protein PH505_bn00240 [Pseudoalteromonas haloplanktis ANT/505] Length = 284 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 78/221 (35%), Gaps = 34/221 (15%) Query: 11 FLIL--LFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 F +L + F+ +L V TG + S + ++ Sbjct: 90 FQLLEMILLAGGLFILFKL--V----TGFLRANRAPQLASPSTSAQQNAFK---QAPIEQ 140 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 P G + + +FD FL AR+ Y + ++ + + Sbjct: 141 PTSTGFASSAPQGESVPFNLP------PNFDVNGFLQGARSHYHTLQTAWNNADYTTMAE 194 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 + + +F + R++ ++V++ ++ I D +++ A + +++R G++ Sbjct: 195 YLSPTLVAEFK---AEREAI-QSVETEVMFI-DAELVRADTNAQSWQVSVRFKGKYRDL- 248 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 D + +++IW R + + W+++ + Sbjct: 249 ---------GD-KKEEPILEIWHLERLM-SDDAPWLIVGVE 278 >gi|53804400|ref|YP_113719.1| hypothetical protein MCA1256 [Methylococcus capsulatus str. Bath] gi|53758161|gb|AAU92452.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath] Length = 204 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 80/230 (34%), Gaps = 33/230 (14%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F ++ D +LLFA I FF L +L + G++ + ++ Sbjct: 7 FEHLNVLD--LLLFAGIGFF----LYRLLAAR-GSQPQPAAGAGYYPHSENPGGANPVSG 59 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 D L P ++ DFD FLN A+ +Y + ++ E Sbjct: 60 RPAFDTDLLSRRGGAQPAQSQPA-----------DFDTTGFLNGAKAAYRQLQAAWDERD 108 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + + L +V+ + D L +++ + + L+ + D +I+ + + + Sbjct: 109 LGTLRALTTDKVFAELQDQL---RASAERHSTELLRV-DAEILEVRDRGDEREVAVLFDV 164 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + E V ++W FVR+ P W L + E Sbjct: 165 TLR-----------EAPAEEAAVVHEVWHFVRSRSSRQPTWFLDGIQQVE 203 >gi|307109340|gb|EFN57578.1| hypothetical protein CHLNCDRAFT_51139 [Chlorella variabilis] Length = 395 Score = 93.4 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 15/155 (9%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK- 146 + F+ F E+ Y I +G+ ++ +LV V+ D L R+ Sbjct: 150 LAKCKKYVPGFNRNAFKQESLELYRDICRLLAQGERGSLRQLVTPAVFSDMKRQLKQRED 209 Query: 147 -SNEKNVKSSLVG----IDDMKIINASI--------EENTVYITIRIVGQFISASYDKDN 193 + + + G +D++ ++ + +T+RI A+YDK Sbjct: 210 PAAGRACSGTSSGWEPTVDELTTVHGRLIMINPKDETSGFAQLTVRIPSAQRFAAYDKAG 269 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPN-WVLIS 227 L++ DPE V D W F S N W L Sbjct: 270 KLVAGDPEQSIDVEDYWVFEHAFKASPANRWRLAG 304 >gi|332374284|gb|AEE62283.1| unknown [Dendroctonus ponderosae] Length = 422 Score = 92.6 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 62/147 (42%), Gaps = 3/147 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ + +I + FD K FL + + I+++ G + ++ Y F+ Sbjct: 264 TELSETLTEICKIDNSFDTKRFLKQCETDIIPNILEAMTRGDLEVLKDWCHEGPYNLFSI 323 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + ++S ++ ID++ ++ + + + I Q + D + ++ D Sbjct: 324 PIQEAYKKGFKIESKILDIDNVDLVMGKVMDQGPVLIISFTSQQMMVFKDVEGNVVDGDL 383 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVL 225 + +V +W R+I ++P W L Sbjct: 384 DKIMRVTHVWVLCRDITETDPRAAWRL 410 >gi|157825721|ref|YP_001493441.1| hypothetical protein A1C_03235 [Rickettsia akari str. Hartford] gi|157799679|gb|ABV74933.1| hypothetical protein A1C_03235 [Rickettsia akari str. Hartford] Length = 211 Score = 92.2 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 84/229 (36%), Gaps = 25/229 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M +L+FA I F++ +L LG + E+ + G+ V + + + Sbjct: 1 MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTRQKSYFGEPVIKDVTYSTVKSNKEE 60 Query: 66 KKKDNLDSINELFPIG-----TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 K I I T + M + FDP F+N A+ +++ I+++ ++ Sbjct: 61 KNIPTAQDIKAFKDIIVEHNITAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + +L+D R + F + S SS + K + N ++I + Sbjct: 121 KDSKELSELIDKRYLEAFEKIIP---SYGDVFDSSAL---SAKYSEIYMFGNNIFIKLLF 174 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G+ ++ + + WTF RN +W L + + Sbjct: 175 QGK----------NVVD----KIEDLKEEWTFTRNANTKEVDWFLSNIE 209 >gi|195108009|ref|XP_001998585.1| GI24055 [Drosophila mojavensis] gi|193915179|gb|EDW14046.1| GI24055 [Drosophila mojavensis] Length = 452 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 69/178 (38%), Gaps = 7/178 (3%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 + + D + + T L++ M ++V + +FD K FL++ + I Sbjct: 267 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPNFDQKQFLHDCEK--DII 324 Query: 115 ---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171 +++ G + ++ Y ++ K + S ++ I+++++ + E Sbjct: 325 PNVLEAIVRGDLEILKDWCFESTYNIIATPITQAKKAGLYLDSKILDIENIELAMGKVME 384 Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ ++ DPE +V +W R+ NP W L+ Sbjct: 385 QGPVLIITFQAQQIMCVRDQKGQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 442 >gi|253701845|ref|YP_003023034.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M21] gi|251776695|gb|ACT19276.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M21] Length = 321 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 77/219 (35%), Gaps = 22/219 (10%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 ILL A I ++ ++ V K+ +P + + + +I + + + Sbjct: 119 ILLLAGI-GYLIYRM--VKKKR----EPEADLYGQRP--------NVIDIDRYQAGQGTA 163 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 P + + + I + FD F + + + I ++ + + L+ Sbjct: 164 RPLGNQPAQDEVEEGLSHIRQMDPSFDEARFNDTVMDMFFKIQGAWMNRDLSGVSALLTD 223 Query: 133 RVYQDFNDSLST--RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY- 189 + + R+ +++ + + +++I A E +IT + + + Sbjct: 224 EMRAAMQGDVDQLLREKRVNRLEN--IAVRNVEISEAWQESGKDFITALVYANLLDYTTD 281 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 D ++S K + WTF R + N W L + Sbjct: 282 DATGAVVSGSKTDPVKFEEYWTFTRTVG--NNPWKLSAI 318 >gi|218459911|ref|ZP_03500002.1| putative translocase transmembrane protein [Rhizobium etli Kim 5] Length = 59 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 37/58 (63%) Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 IT+RIV Q ISA+YDK + LI D E +V D+WTF R+ +PNW L++T+ Sbjct: 1 QITVRIVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATESEH 58 >gi|148907785|gb|ABR17018.1| unknown [Picea sitchensis] Length = 190 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 11/139 (7%) Query: 98 FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL- 156 + F EA Y+ I +G ++ +LV +Y F + R++ V + Sbjct: 50 YSKPKFYEEAIQLYKEINSHLAQGDRTSLRQLVTENMYTIFKREIKQRETTWSRVHWEMI 109 Query: 157 ---VGIDDMK-----IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208 V I ++ + +++ V IT+ I+ A+YD +LI+ D ++ V D Sbjct: 110 EPTVRIRTLRARMIAVDKNNLDNAFVQITLEILTNQKFAAYDLKGILITEDSKVL--VED 167 Query: 209 IWTFVRNIPPSNPNWVLIS 227 IW F R++ W L Sbjct: 168 IWVFERSLFQPGARWRLCG 186 >gi|297808779|ref|XP_002872273.1| protein translocase [Arabidopsis lyrata subsp. lyrata] gi|297318110|gb|EFH48532.1| protein translocase [Arabidopsis lyrata subsp. lyrata] Length = 314 Score = 91.5 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 19/159 (11%) Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 L T + F EA Y+ I G I K V R+Y + + Sbjct: 157 ELRSAYAIAKLRKTGYSKNTFYIEALELYKQINILMANGDKKTIRKNVTERMYSALKNEI 216 Query: 143 STRKS--------------NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 R++ + +++ L+GID + A + +T+ + + + Sbjct: 217 KQREAMWDGVYWEMIEPVVKIRTLQARLIGIDRTDLKKA-----FIQLTLEFLTKQKFEA 271 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 YD +++ D V DIW F +++ + W L Sbjct: 272 YDAKGNVVAGDRNKEVLVRDIWVFEKSLFHTGAYWRLCG 310 >gi|77359903|ref|YP_339478.1| hypothetical protein PSHAa0957 [Pseudoalteromonas haloplanktis TAC125] gi|76874814|emb|CAI86035.1| conserved protein of unknown function; putative membrane protein [Pseudoalteromonas haloplanktis TAC125] Length = 283 Score = 91.5 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 33/221 (14%), Positives = 79/221 (35%), Gaps = 34/221 (15%) Query: 11 FLIL--LFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 F +L + F+ L+L V G + S + ++ K+ Sbjct: 90 FQLLEMILLAGAAFIILKL--VRG-------------FMRARQSPQLASAGMSQNAFKQA 134 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 ++ FD FL AR Y + +++ E H + + Sbjct: 135 PIEHEQTTSTGFANSTAHGDDVPFNLPPGFDTNGFLQGAREHYHTLQNAWNEADYHTMAE 194 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 + + +F + R++ +V + ++ I D +++ A + +++R G++ + Sbjct: 195 YLSPELVAEFK---AEREAI-TSVATEVMFI-DAELVRADTLTDKWQVSVRFKGKYRDLA 249 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 DK I ++IW R + ++ W+++ + Sbjct: 250 -DKQEQPI----------LEIWHLER-LTLTDAPWLIVGVE 278 >gi|157133678|ref|XP_001662961.1| mitochondrial import inner membrane translocase subunit tim44 [Aedes aegypti] gi|108870735|gb|EAT34960.1| mitochondrial import inner membrane translocase subunit tim44 [Aedes aegypti] Length = 433 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 65/179 (36%), Gaps = 3/179 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + + D + + T L++ + +I + +FD K FL + + Sbjct: 248 ESENPVIRASRLLTDKVSDVMGNLFSKTELSETLTEICKIDPNFDQKQFLRDCENDIIPN 307 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G + ++ Y +S + + S ++ I+++ + + E Sbjct: 308 ILEAMIRGDLEVLKDWCFESTYNIIATPISQAQKLGYYLDSKVLDIENVDLAMGKVMEQG 367 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 + I Q I D ++ DPE + +W R+ NP W L+ + Sbjct: 368 PVLIITFQTQQIMCVRDSKGNVVEGDPEKVMRCNYVWVLCRDPNDLNPKSAWRLMELQA 426 >gi|157118792|ref|XP_001653263.1| mitochondrial import inner membrane translocase subunit tim44 [Aedes aegypti] gi|108875602|gb|EAT39827.1| mitochondrial import inner membrane translocase subunit tim44 [Aedes aegypti] Length = 433 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 65/179 (36%), Gaps = 3/179 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + + D + + T L++ + +I + +FD K FL + + Sbjct: 248 ESENPVIRASRLLTDKVSDVMGNLFSKTELSETLTEICKIDPNFDQKQFLRDCENDIIPN 307 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G + ++ Y +S + + S ++ I+++ + + E Sbjct: 308 ILEAMIRGDLEVLKDWCFESTYNIIATPISQAQKLGYYLDSKVLDIENVDLAMGKVMEQG 367 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 + I Q I D +I DPE + +W R+ NP W L+ + Sbjct: 368 PVLIITFQTQQIMCVRDSKGNVIEGDPEKVMRCNYVWVLCRDPNDLNPKSAWRLMELQA 426 >gi|116749223|ref|YP_845910.1| import inner membrane translocase subunit Tim44 [Syntrophobacter fumaroxidans MPOB] gi|116698287|gb|ABK17475.1| import inner membrane translocase, subunit Tim44 [Syntrophobacter fumaroxidans MPOB] Length = 341 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 3/155 (1%) Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 E P + + +++ F+ + F ++ + I + + IE L+ + Sbjct: 178 PEYLPPADDVERGFQELRRFDPGFNEESFKETVQDLFFRIQAGWMNRSLDGIEGLLAPEM 237 Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY-DKDN 193 F + + + K + + ++ EE Y+T+ + + DK Sbjct: 238 KAFFASEFDRLRRSGRINKLENIAVRKVEPSEVWQEEGKDYVTVLFTANLLDYTVDDKTG 297 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 ++ D K + WTF R+I W L + Sbjct: 298 QVVEGDKLNPVKFQEFWTFCRDIGTQ--RWQLTAI 330 >gi|148265319|ref|YP_001232025.1| import inner membrane translocase, subunit Tim44 [Geobacter uraniireducens Rf4] gi|146398819|gb|ABQ27452.1| import inner membrane translocase, subunit Tim44 [Geobacter uraniireducens Rf4] Length = 318 Score = 90.7 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 72/222 (32%), Gaps = 25/222 (11%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F ILL A I ++ + F K V S G Sbjct: 116 LFEILLLAGI-GYLIYR-----------------FVKKKRVDSSYSTYEQGGYQHGNVTP 157 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 P T ++ M I + FD F + + + I ++ + ++ L Sbjct: 158 IYGGTESYEPQPTDVDTGMAHIRQMDPSFDESRFNDSVMDIFFKIQGAWMNRDLSSVSGL 217 Query: 130 VDSRVYQDFNDSLST--RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 + + + F + + R +++ + + +++I E YIT I + Sbjct: 218 LTDEMKRIFQEDMDRLLRDKQVNRLEN--IAVRNVEISEVWQESGQDYITALIYANLLDY 275 Query: 188 SY-DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + D ++S K + WTF R + N W L + Sbjct: 276 TTDDATGTVVSGSKTEPVKFEEYWTFTRPVG--NNPWRLSAI 315 >gi|198450930|ref|XP_001358182.2| GA11194 [Drosophila pseudoobscura pseudoobscura] gi|198131257|gb|EAL27319.2| GA11194 [Drosophila pseudoobscura pseudoobscura] Length = 458 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 61/154 (39%), Gaps = 7/154 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138 T L++ M ++V + FD K FL + + I +++ G + ++ Y Sbjct: 300 TELSETMTELVKIDPAFDQKQFLRDCET--DIIPNVLEAIVRGDLEILKDWCFESTYNVI 357 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 ++ K + + S ++ I+D+ + + + + I Q I D ++ Sbjct: 358 ATPITQAKKSGLYLDSKILDIEDIDLAMGKVMDQGPVLIITFQAQQIMCVRDPKGKVVEG 417 Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 DPE +V +W R+ NP W L+ Sbjct: 418 DPEKVMRVAYVWVLCRDREELNPKAAWRLLEISA 451 >gi|119115002|ref|XP_310830.3| AGAP000291-PA [Anopheles gambiae str. PEST] gi|116130625|gb|EAA06726.3| AGAP000291-PA [Anopheles gambiae str. PEST] Length = 401 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 64/178 (35%), Gaps = 7/178 (3%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 + + D + I T L++ + +I + FD K FL + N + I Sbjct: 216 ESENPMIRASRLLTDKVSDIMGNLFSKTELSETLTEICKIDPSFDQKQFLRDCEN--DII 273 Query: 115 ---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171 +++ G++ + Y ++ + + S ++ I+++ + + E Sbjct: 274 PNVLEAIVRGELEVLRDWCFESTYNIIATPIAQAQKAGCRLDSKILDIENVDLAMGKVME 333 Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + + Q I D +I DPE + +W R+ +P W L+ Sbjct: 334 QGPVLIVTFQTQQIMCVRDGKGAVIEGDPEKVMRCHHVWVLCRDPNELDPKAAWRLME 391 >gi|118579223|ref|YP_900473.1| import inner membrane translocase, subunit Tim44 [Pelobacter propionicus DSM 2379] gi|118501933|gb|ABK98415.1| import inner membrane translocase, subunit Tim44 [Pelobacter propionicus DSM 2379] Length = 314 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 69/217 (31%), Gaps = 24/217 (11%) Query: 15 LFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSI 74 L A I ++ + K + + + G Sbjct: 116 LLAGIA-YLIYR----------FVKKKQPELAPGGYNQAGYQATSVPPPYGAAYQESQH- 163 Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 G + + I + FD F + A +++ I ++ + + L+ + Sbjct: 164 -----DGQGADGGLDHIRQMDPGFDENRFNDMAMDTFFKIQGAWMNRDLAPVSTLLTDEM 218 Query: 135 YQDFNDSLST--RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY-DK 191 + F + L R+ +++ + + + I A E YIT I + + D Sbjct: 219 RRVFQEDLDGLLRERRTNRLEN--IAVRKVDISEAWQESGQDYITTLIYANLLDYTTDDA 276 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 +++S K + WTF R I + W L + Sbjct: 277 SGIVVSGSKTDPVKFEEYWTFTRPIGGT--PWRLSAI 311 >gi|225451048|ref|XP_002284948.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 299 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 9/140 (6%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 + + F EA + Y+ I ++ K V +Y + + R+S V + Sbjct: 156 GYSRQKFYTEAVDLYKEINSQIANSAKASLRKSVTENMYSALKNEIKQRESKWHKVYWEM 215 Query: 157 VG-IDDMKIINASI------EENTV--YITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 V + ++ + A + + N +T+ + + +YD +++ D + V Sbjct: 216 VEPVVKIRTLRARMISIDRNDMNKAFIQLTLEFLTKQKFEAYDSKGCVVAGDKDKEVLVR 275 Query: 208 DIWTFVRNIPPSNPNWVLIS 227 D+W F R++ W L Sbjct: 276 DVWVFERSLFHPGAYWRLCG 295 >gi|195143739|ref|XP_002012855.1| GL23705 [Drosophila persimilis] gi|194101798|gb|EDW23841.1| GL23705 [Drosophila persimilis] Length = 458 Score = 89.9 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 61/154 (39%), Gaps = 7/154 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138 T L++ M ++V + FD K FL + + I +++ G + ++ Y Sbjct: 300 TELSETMTELVKIDPAFDQKQFLRDCET--DIIPNVLEAIVRGDLEILKDWCFESTYNII 357 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 ++ K + + S ++ I+D+ + + + + I Q I D ++ Sbjct: 358 ATPITQAKKSGLYLDSKILDIEDIDLAMGKVMDQGPVLIITFQAQQIMCVRDPKGKVVEG 417 Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 DPE +V +W R+ NP W L+ Sbjct: 418 DPEKVMRVAYVWVLCRDREELNPKAAWRLLEISA 451 >gi|170068221|ref|XP_001868783.1| mitochondrial import inner membrane translocase subunit tim44 [Culex quinquefasciatus] gi|167864292|gb|EDS27675.1| mitochondrial import inner membrane translocase subunit tim44 [Culex quinquefasciatus] Length = 431 Score = 89.9 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 60/152 (39%), Gaps = 3/152 (1%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ + +I + FD K FL + + I+++ G + ++ Y Sbjct: 273 TELSETLTEICKIDPSFDQKQFLRDCENDIIPNILEAMIRGDLEILKDWCFESTYNIIAT 332 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 ++ + + S ++ I+++ + + E + + Q I D N ++ DP Sbjct: 333 PIAQAQKAGFFLDSKILDIENVDLAMGKVMEQGPVLIVTFQTQQIMCVRDSKNAVVEGDP 392 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 E + +W R+ NP W L+ + Sbjct: 393 EKVMRCNYVWVLCRDPNDLNPRSAWRLMELQA 424 >gi|325981336|ref|YP_004293738.1| import inner membrane translocase subunit Tim44 [Nitrosomonas sp. AL212] gi|325530855|gb|ADZ25576.1| import inner membrane translocase subunit Tim44 [Nitrosomonas sp. AL212] Length = 285 Score = 89.6 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 74/229 (32%), Gaps = 31/229 (13%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F ++ D + +L F +++ L +K E+ S +SG ++ + Sbjct: 87 FENINMMDIVTMLLLIGAVFFIIRM---L-RKPKVEQSPSMQYSGMNTNTRENFNTPAFT 142 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 P DF + FL A+ S+ + + G Sbjct: 143 PSAGTTVADSQAAHRQPNIPA-------------DFKVEPFLRHAKASFMRLQAAHDHGD 189 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 ++ I + + + ++ R ++ + + D ++ + ++R G Sbjct: 190 INEIRDYTTPEMLAEISAQINERGDAQQTTEIMFI---DANLLEVETAGDLAIASVRFTG 246 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 Q L S+PE +IW +++ + W+L + Sbjct: 247 QL--------KDLPDSEPEA---FDEIWHVQKDLKDPDATWLLAGIQQA 284 >gi|239947276|ref|ZP_04699029.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239921552|gb|EER21576.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 211 Score = 89.6 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 85/229 (37%), Gaps = 25/229 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M +L+FA I FF+ +L LG + E+ + G+ V + + + Sbjct: 1 MSPQIIELLIFAVIAFFIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSTVKSNKEE 60 Query: 66 KKKDNLDSINELFPIG-----TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 K I I T + M + + FDP F+N A+ +++ I+++ ++ Sbjct: 61 KNIPTAQDIKAFKDIIVEHNITAVVDGMEQVHNRLYSFDPVKFINNAKTAFQMIIEAAYK 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + +L+D R ++F S SS + K + N ++I + Sbjct: 121 KDTQELSELIDKRYLEEFEKITP---SYGDFFDSSAL---SAKYSEIYMFGNNIFIKLLF 174 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G+ ++ + + WTF RN +W L + + Sbjct: 175 QGK----------NVVD----KIEDLKEEWTFTRNANAKEVDWFLSNIE 209 >gi|157803805|ref|YP_001492354.1| hypothetical protein A1E_03170 [Rickettsia canadensis str. McKiel] gi|157785068|gb|ABV73569.1| hypothetical protein A1E_03170 [Rickettsia canadensis str. McKiel] Length = 211 Score = 89.6 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 84/229 (36%), Gaps = 25/229 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M +L+FA I FF+ +L LG E+ + G+ V + + Sbjct: 1 MSPQIIELLIFALIAFFIINKLITTLGSTAEEEQTKQKSYFGEPVIKDVTYSAVKSNKAE 60 Query: 66 KKKDNLDSINELFPIG-----TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 K ++ I I T + M + FDP F+N A+ +++ I+++ ++ Sbjct: 61 KNLPTVEDIKAFQDIIVEQNITAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + +LVD R ++F S SS + K + N ++I + Sbjct: 121 KDTQELSELVDKRYLEEFEKITP---SYGDFFDSSAL---SAKYSEIYLFGNNIFIKLLF 174 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G+ ++ + + WTF RN +W L + + Sbjct: 175 QGK----------NVVD----KIEDLKEEWTFTRNANTKEVDWFLSNIE 209 >gi|298205045|emb|CBI34352.3| unnamed protein product [Vitis vinifera] Length = 196 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 9/140 (6%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 + + F EA + Y+ I ++ K V +Y + + R+S V + Sbjct: 53 GYSRQKFYTEAVDLYKEINSQIANSAKASLRKSVTENMYSALKNEIKQRESKWHKVYWEM 112 Query: 157 VG-IDDMKIINASI------EENTV--YITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 V + ++ + A + + N +T+ + + +YD +++ D + V Sbjct: 113 VEPVVKIRTLRARMISIDRNDMNKAFIQLTLEFLTKQKFEAYDSKGCVVAGDKDKEVLVR 172 Query: 208 DIWTFVRNIPPSNPNWVLIS 227 D+W F R++ W L Sbjct: 173 DVWVFERSLFHPGAYWRLCG 192 >gi|324512642|gb|ADY45230.1| Import inner membrane translocase subunit tim-44 [Ascaris suum] Length = 465 Score = 89.2 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 67/171 (39%), Gaps = 8/171 (4%) Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVH 124 + D I +F + +++V+ +I + FD ++L E I +++F G + Sbjct: 292 RGVTDRITSVFTTKSEVSEVLTEIAKIDPSFDKVEWLRFCER--EVIPNVLEAFIRGDLK 349 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNE-KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 ++ R Y + K S ++ I +++++ + + + I Sbjct: 350 ILQDWCHERAYNALAAVVKEYKKVNFSTADSRVIDISKVEMVSGKMMDQGPVLIITFQAF 409 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKLGE 232 I+ + + ++ D +V +W R++ NP W L+ + E Sbjct: 410 MINVVKNLEGKVVQGDENNPVRVHHVWVMCRDMEEYNPAVAWKLLEVHMQE 460 >gi|88858066|ref|ZP_01132708.1| hypothetical protein PTD2_11789 [Pseudoalteromonas tunicata D2] gi|88819683|gb|EAR29496.1| hypothetical protein PTD2_11789 [Pseudoalteromonas tunicata D2] Length = 283 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 74/217 (34%), Gaps = 37/217 (17%) Query: 14 LLFAFITFFVFLQLRGVLGK-KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 LL A + F +F ++ V+ K + P G + + G + D Sbjct: 99 LLMALLAFVIFKVVKMVMAKNRQSQPMPAGGPSINPVEQTPQYRENTT----GGFATSQD 154 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + P G FD FL AR+ Y + ++ + IE+ V Sbjct: 155 HVPFNLPSG----------------FDTTAFLQGARDHYHTLQKAWNNNDLTTIEEYVSP 198 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 ++ + + R ++ V D ++ A +++R G++ D Sbjct: 199 ALFNELK---AERADVADV--ATEVLFLDAELARADSSPILWEVSVRFKGKYRD-LGDTQ 252 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 +I ++W R++ SN W+++ + Sbjct: 253 EEMI----------NEVWHLERDMRQSNAPWLIVGIE 279 >gi|156541363|ref|XP_001599273.1| PREDICTED: similar to mitochondrial import inner membrane translocase subunit tim44, partial [Nasonia vitripennis] Length = 400 Score = 88.8 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 62/180 (34%), Gaps = 7/180 (3%) Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 + + D + I T L++ + +I + FD FL + + Sbjct: 214 EESENPVVRASRLLTDKVSDIFGGLFQKTELSETLTEICKLDPSFDKIKFLKDCET--DI 271 Query: 114 I---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE 170 I +++ G + ++ Y L + S ++ ID++ ++ + Sbjct: 272 IPNVLEAMIRGDLEILKDWCHEAPYNVIAQPLQQAFKLGYRLDSKVLDIDNVDLLMGKVM 331 Query: 171 ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIST 228 + + I Q I D ++ DPE +V +W R+ NP W L+ Sbjct: 332 DQGPVLAISFTSQQIMCVRDAKGNVVEGDPEKVMRVNYVWVLCRDPAELNPKSAWRLLEI 391 >gi|63093891|dbj|BAD98172.1| hypothetical protein [Drosophila parabipectinata] Length = 460 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 64/149 (42%), Gaps = 3/149 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ M ++V + FD K+FL++ + I+++ G + ++ Y Sbjct: 302 TELSETMTELVKIDPSFDQKEFLHDCETDIIPNILEAIVRGDLEILKDWCFESTYNIIAT 361 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 ++ K + S ++ I+++++ + E + I Q I D+ ++ DP Sbjct: 362 PITQAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKAQVVEGDP 421 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 E +V +W R+ NP W L+ Sbjct: 422 EKVMRVHYVWVLCRDRNELNPKAAWRLME 450 >gi|186526131|ref|NP_001119286.1| P-P-bond-hydrolysis-driven protein transmembrane transporter [Arabidopsis thaliana] gi|332006297|gb|AED93680.1| Mitochondrial inner membrane translocase complex, subunit Tim44-related protein [Arabidopsis thaliana] Length = 296 Score = 88.4 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 19/159 (11%) Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 L T + F EA Y+ I G+ I K V R+Y + + Sbjct: 139 ELRSAYAIAKLRKTGYSKNTFYIEALELYKQINIQMANGEKKTIRKNVTERMYSALKNEI 198 Query: 143 STRKS--------------NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 R++ + +++ L+GID + A + +T+ + + + Sbjct: 199 KQREAMWDGVYWEMVEPVVKIRTLQARLIGIDRTDLKKA-----FIQLTLEFLTKQKFEA 253 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 YD + + D V DIW F +++ + W L Sbjct: 254 YDAKGNVAAGDKNKEVLVRDIWVFEKSLFHTGAYWRLCG 292 >gi|326678158|ref|XP_003201001.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-like [Danio rerio] gi|94734038|emb|CAK04039.1| novel protein containing a Tim44-like domain (zgc:110764) [Danio rerio] Length = 452 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 67/174 (38%), Gaps = 3/174 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEA 113 + D + I T +++V+ +I+ V FD FL + ++ Sbjct: 267 ESDNAFIRASRAVTDKMTDIIGGLFSKTEMSEVLTEILKVDPSFDKDSFLKQCEKDIIPN 326 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ +G++ ++ Y + K+ S ++ ID++ + + E Sbjct: 327 ILEAMIQGELDVLKDWCYEATYSQLAHPIQQAKAMGLQFHSKILDIDNIDLAMGKMMEQG 386 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN--WVL 225 + I Q + + ++ DP+ +++ +W R+ NPN W L Sbjct: 387 PVLIITFQAQLVMVIRNVKGEVVEGDPDKVLRMMYVWALCRDQEELNPNAAWRL 440 >gi|301058972|ref|ZP_07199941.1| Tim44-like domain protein [delta proteobacterium NaphS2] gi|300446968|gb|EFK10764.1| Tim44-like domain protein [delta proteobacterium NaphS2] Length = 250 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 83/224 (37%), Gaps = 13/224 (5%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F IL+ + +F++ + +G K FS + Sbjct: 37 LFEILIIGGLIYFLYKKF-------SGKNKSKRSLFSSPDGGGGSGGGYESISSSQYRPP 89 Query: 70 NLDS--INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 ++ S I ++ P+ + ++ + + FDP++F A++ + + ++ + ++ Sbjct: 90 DMASSGIPDMAPVNSSVDD-LDTVRHYDPGFDPENFKEFAQDVFFKVQAAWTRRDISVMK 148 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 + + +++ ++ + ++ + + + + + I++ ++ ++ + Sbjct: 149 QHLGTQLLGEYEQHFADLRAKGQENRLENIAVRSVDIVDMGEMGGEPFVIVQFRANLLDY 208 Query: 188 SYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + D+ ++ K + W F R+ S W L + Sbjct: 209 TVDEATGQVLEGSSSEPVKFEERWAFSRSPGSS--QWKLEGIQE 250 >gi|63093892|dbj|BAD98173.1| hypothetical protein [Drosophila parabipectinata] Length = 428 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 64/149 (42%), Gaps = 3/149 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ M ++V + FD K+FL++ + I+++ G + ++ Y Sbjct: 270 TELSETMTELVKIDPSFDQKEFLHDCETDIIPNILEAIVRGDLEILKDWCFESTYNIIAT 329 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 ++ K + S ++ I+++++ + E + I Q I D+ ++ DP Sbjct: 330 PITQAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKAQVVEGDP 389 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 E +V +W R+ NP W L+ Sbjct: 390 EKVMRVHYVWVLCRDRNELNPKAAWRLME 418 >gi|145334561|ref|NP_001078626.1| P-P-bond-hydrolysis-driven protein transmembrane transporter [Arabidopsis thaliana] gi|26451284|dbj|BAC42743.1| unknown protein [Arabidopsis thaliana] gi|332006296|gb|AED93679.1| Mitochondrial inner membrane translocase complex, subunit Tim44-related protein [Arabidopsis thaliana] Length = 313 Score = 88.0 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 19/159 (11%) Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 L T + F EA Y+ I G+ I K V R+Y + + Sbjct: 156 ELRSAYAIAKLRKTGYSKNTFYIEALELYKQINIQMANGEKKTIRKNVTERMYSALKNEI 215 Query: 143 STRKS--------------NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 R++ + +++ L+GID + A + +T+ + + + Sbjct: 216 KQREAMWDGVYWEMVEPVVKIRTLQARLIGIDRTDLKKA-----FIQLTLEFLTKQKFEA 270 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 YD + + D V DIW F +++ + W L Sbjct: 271 YDAKGNVAAGDKNKEVLVRDIWVFEKSLFHTGAYWRLCG 309 >gi|242051094|ref|XP_002463291.1| hypothetical protein SORBIDRAFT_02g041340 [Sorghum bicolor] gi|241926668|gb|EER99812.1| hypothetical protein SORBIDRAFT_02g041340 [Sorghum bicolor] Length = 158 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 59/141 (41%), Gaps = 9/141 (6%) Query: 96 TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155 T + K F ++A Y+ + G ++ K++ R++ + L R+S +V Sbjct: 14 TGYTKKQFYDQALKIYKEVNTLMAHGDTSSLRKILTERMHSTIKNELKRRQSMWNSVHWE 73 Query: 156 LV----GIDDMK-----IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 LV I ++ + ++++ + +T+ V + +Y+ ++S D V Sbjct: 74 LVEPAVSIRTLRARMIGLDKNDLDKSFIQLTLEFVTKQKFEAYNSKGAVVSGDKSKEVLV 133 Query: 207 IDIWTFVRNIPPSNPNWVLIS 227 DIW F R++ W + Sbjct: 134 KDIWVFERSLFHPGAYWRVCG 154 >gi|197117400|ref|YP_002137827.1| transport protein [Geobacter bemidjiensis Bem] gi|197086760|gb|ACH38031.1| transport protein, Tim44-like domain, putative [Geobacter bemidjiensis Bem] Length = 322 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 73/219 (33%), Gaps = 22/219 (10%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 ILL A I ++ ++ V K+ +P + + + +I + + Sbjct: 120 ILLLAGIA-YLIYRM--VKKKR----EPETDVYGQRP--------NVIDIDHYQVSQGSA 164 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + + + I + FD F + + + I ++ + + L Sbjct: 165 QSLGYQQAQDEVEEGLSHIRQMDPSFDEGRFNDAVMDMFFKIQGAWMNRDLSGVSALFTD 224 Query: 133 RVYQDFNDSLST--RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY- 189 + + R +++ + + +++I A E +IT I + + Sbjct: 225 EMRAAMQGDVDQLLRDKRVNRLEN--IAVRNVEISEAWQESGKDFITALIYANLLDYTTD 282 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 D ++S K + WTF R + N W L + Sbjct: 283 DATGAVVSGSKADPVKFEEYWTFTRTVG--NNPWKLSAI 319 >gi|118581965|ref|YP_903215.1| import inner membrane translocase, subunit Tim44 [Pelobacter propionicus DSM 2379] gi|118504675|gb|ABL01158.1| import inner membrane translocase, subunit Tim44 [Pelobacter propionicus DSM 2379] Length = 317 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 70/222 (31%), Gaps = 25/222 (11%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F I+L A + ++ + K +R + + Sbjct: 116 MFEIILLAGL-GYLIYR----------FIKKKRELSLATPSGQGGYQREAVAPVSYGYQA 164 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + P + + + + + FD F + + + I ++ + + L Sbjct: 165 EV-------PASSDVESGISHVRQMDPTFDESSFNDAVMDIFFRIQGAWMNRDLAPVSSL 217 Query: 130 VDSRVYQDFNDSLST--RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 + + + F + + R +++ + + ++I E Y+T + Sbjct: 218 LTDEMKRIFQEDVDRLLRDRQVNRLEN--IAVRKVEITEVWQESGQDYVTALVHANLFDY 275 Query: 188 SY-DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + D ++S K + WTF R++ N W L + Sbjct: 276 TTDDATGAVVSGSKSEPVKFEEYWTFTRSVG--NNPWRLSAI 315 >gi|195037110|ref|XP_001990008.1| GH18477 [Drosophila grimshawi] gi|193894204|gb|EDV93070.1| GH18477 [Drosophila grimshawi] Length = 452 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 71/178 (39%), Gaps = 7/178 (3%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 + + D + + T L++ M ++V + +FD K+FL++ + I Sbjct: 267 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPNFDQKEFLHDCEK--DII 324 Query: 115 ---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171 +++ G + ++ Y ++ K + + S ++ I+++++ + E Sbjct: 325 PNVLEAIVRGDLEILKDWCFESTYNIIATPITQAKKSGLYLDSKILDIENIELAMGKVME 384 Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ ++ DP+ +V +W R+ NP W L+ Sbjct: 385 QGPVLIITFQAQQIMCVRDQKAQVVEGDPDKVMRVHYVWVLCRDRNELNPKAAWRLME 442 >gi|198435825|ref|XP_002124932.1| PREDICTED: similar to translocase of inner mitochondrial membrane 44 homolog [Ciona intestinalis] Length = 431 Score = 88.0 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 69/177 (38%), Gaps = 7/177 (3%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 + ++ G D + + GT ++KVM +I + +F + FL+ R +E I Sbjct: 246 ESDNVLIRGSRFITDKISGVAGSLFGGTDISKVMTEIARIDPEFSAQGFLDFCR--FEII 303 Query: 115 ---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171 +++ +G + ++ Y + + + + V +D + I A+ + Sbjct: 304 PNLLEAISQGNENIVKDWCSEAPYNQLMFPVKQAQQIGCRYELTTVDLDHVDIAGATKVD 363 Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN--PNWVLI 226 + I Q I +K ++ D + KV +W R++ + W +I Sbjct: 364 QGPVLVISFQTQQIMVVRNKKGDIVEGDSDQIMKVFHVWALCRDVEEMDRRAAWKII 420 >gi|195569739|ref|XP_002102866.1| GD20131 [Drosophila simulans] gi|194198793|gb|EDX12369.1| GD20131 [Drosophila simulans] Length = 304 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 69/176 (39%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + + D + + T L++ M ++V + FD KDFL + + Sbjct: 119 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 178 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I++S G + ++ + + + K + S ++ I+++++ + E Sbjct: 179 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGLYLDSKILDIENIELAMGKVMEQG 238 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ + ++ DPE +V +W R+ NP W L+ Sbjct: 239 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 294 >gi|61806584|ref|NP_001013525.1| mitochondrial import inner membrane translocase subunit TIM44 [Danio rerio] gi|60649493|gb|AAH90431.1| Translocase of inner mitochondrial membrane 44 homolog (yeast) [Danio rerio] gi|182891522|gb|AAI64677.1| Timm44 protein [Danio rerio] Length = 452 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 67/174 (38%), Gaps = 3/174 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEA 113 + D + I T +++V+ +I+ V FD FL + ++ Sbjct: 267 ESDNAFIRASRAVTDKMTDIIGGLFSKTEMSEVLTEILKVDPTFDKDSFLKQCEKDIIPN 326 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ +G++ ++ Y + K+ S ++ ID++ + + E Sbjct: 327 ILEAMIQGELDVLKDWCYEATYSQLAHPIQQAKAMGLQFHSKILDIDNIDLAMGKMMEQG 386 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN--WVL 225 + I Q + + ++ DPE +++ +W R+ NPN W L Sbjct: 387 PVLIITFQAQLVMVIRNVKGEVVEGDPEKVLRMMYVWALCRDQEELNPNAAWRL 440 >gi|242051390|ref|XP_002463439.1| hypothetical protein SORBIDRAFT_02g043830 [Sorghum bicolor] gi|241926816|gb|EER99960.1| hypothetical protein SORBIDRAFT_02g043830 [Sorghum bicolor] Length = 474 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 13/196 (6%) Query: 28 RGVLG--------KKTGNE--KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINEL 77 R VLG K G+ K + + + + + I +L Sbjct: 245 RTVLGEKWEAFKNKIQGHPVYKRVDEYTKPVVTKGQEVAEDVRERWETSDNPVVQKIQDL 304 Query: 78 FP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 T R+I F DF+ + + + + ++ ++ +G V ++K V Sbjct: 305 NESLLEETSAAVTFREIRQRDPSFSLSDFVADVQETIKPVLTAYSKGDVETLKKYCTKEV 364 Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNL 194 + S ++ I + ++ + ++ I +R Q I D++ Sbjct: 365 IERCKGEREAYASQGIFFDHKILHISEADVLETKMFGSSPIIILRFQTQQIYCVRDREGQ 424 Query: 195 LISSDPEIFGKVIDIW 210 + + V W Sbjct: 425 VTEGGQDTIQTVFYSW 440 >gi|159479570|ref|XP_001697863.1| mitochondrial inner membrane translocase [Chlamydomonas reinhardtii] gi|158273961|gb|EDO99746.1| mitochondrial inner membrane translocase [Chlamydomonas reinhardtii] Length = 264 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 55/150 (36%), Gaps = 3/150 (2%) Query: 64 KGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 + + + EL G+ ++ MR+I FD F+ + +V +F + Sbjct: 80 ETSDHPVVHKVEELKSSMFTGSEASRAMREIRVRDQAFDMNRFVQSVKLDAPVVVKAFLK 139 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + + + + + F S++ I D++I+ + ++ +I + Sbjct: 140 HDLDTLSQHCGPELMERFAGIFKHFNEQGLFEDPSILFIGDVEIVEVRLMDDDPFIIAQF 199 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIW 210 Q + + DK ++ D +V W Sbjct: 200 HCQQLKCTRDKFGNVVDGDANTIQRVYYFW 229 >gi|194746677|ref|XP_001955803.1| GF18940 [Drosophila ananassae] gi|190628840|gb|EDV44364.1| GF18940 [Drosophila ananassae] Length = 461 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 64/149 (42%), Gaps = 3/149 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ M ++V + FD K+FL++ + I+++ G + ++ + Sbjct: 303 TELSETMTELVKIDPSFDQKEFLHDCETDIIPNILEAIVRGDLEILKDWCFESTFNIIAT 362 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 ++ K + S ++ I+++++ + E + I Q I D+ ++ DP Sbjct: 363 PITQAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKAQVVEGDP 422 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 E +V +W R+ NP W L+ Sbjct: 423 EKVMRVHYVWVLCRDRNELNPKAAWRLME 451 >gi|218200130|gb|EEC82557.1| hypothetical protein OsI_27102 [Oryza sativa Indica Group] gi|222637566|gb|EEE67698.1| hypothetical protein OsJ_25363 [Oryza sativa Japonica Group] Length = 321 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 57/141 (40%), Gaps = 9/141 (6%) Query: 96 TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155 T + K+F ++A Y+ + G ++ K++ R++ + L R+S +V Sbjct: 177 TGYTKKEFYDQAFKIYKEVNTLMAHGDTSSLRKILTERMHSTIKNELKKRQSMWSSVHWE 236 Query: 156 LV---------GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 LV + + +++ + +T+ V + +Y+ ++S D V Sbjct: 237 LVEPAVCIRTLRARMIGLDKNDLDKAFIQLTLEFVTKQKFEAYNTKGEVVSGDKSKEVLV 296 Query: 207 IDIWTFVRNIPPSNPNWVLIS 227 DIW F R++ W + Sbjct: 297 KDIWVFERSLFHPGAYWRVCG 317 >gi|25009742|gb|AAN71045.1| AT09326p [Drosophila melanogaster] gi|40882559|gb|AAR96191.1| AT24717p [Drosophila melanogaster] Length = 459 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 69/176 (39%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + + D + + T L++ M ++V + FD KDFL + + Sbjct: 274 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 333 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I++S G + ++ + + + K + S ++ I+++++ + E Sbjct: 334 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGLYLDSKILDIENIELAMGKVMEQG 393 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ + ++ DPE +V +W R+ NP W L+ Sbjct: 394 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 449 >gi|307199490|gb|EFN80103.1| Mitochondrial import inner membrane translocase subunit TIM44 [Harpegnathos saltator] Length = 410 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 63/174 (36%), Gaps = 3/174 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + + D + I T L++ + +I + +F FL + + Sbjct: 225 ESDNAVLRASRLLTDKVTDIIGGLFQKTELSETLTEICKLDPNFSRIQFLKDCETDFIPN 284 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G + ++ Y L + + S ++ ID++ ++ + + Sbjct: 285 ILEAMVRGDLEILKDWCHEAPYNVIAQPLKEVQKLGYRLDSKILDIDNVDLMMGKMMDQG 344 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 + I Q I + N ++ DP+ +V IW R+ NP W L Sbjct: 345 PVLIIGFQCQQIMCVRNSKNEVVEGDPQKVMRVNYIWVLCRDRTELNPKAAWRL 398 >gi|219884429|gb|ACL52589.1| unknown [Zea mays] Length = 303 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 57/141 (40%), Gaps = 9/141 (6%) Query: 96 TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155 T + F ++A Y+ + G ++ +++ R++ + L R+S +V Sbjct: 159 TGYTKNQFYDQALKIYKEVNTLMAHGDTSSLREILTERMHSTIKNELKRRQSMWNSVHWE 218 Query: 156 LV----GIDDMK-----IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 LV I ++ + +++ + +T+ V + +Y+ ++S D V Sbjct: 219 LVEPAVSIRTLRARMIGLDKNDLDKAFIQLTLEFVTKQKFEAYNSKGAVVSGDKSKEVLV 278 Query: 207 IDIWTFVRNIPPSNPNWVLIS 227 DIW F R++ W + Sbjct: 279 KDIWVFERSLFHPGAYWRVCG 299 >gi|195497862|ref|XP_002096280.1| GE25149 [Drosophila yakuba] gi|194182381|gb|EDW95992.1| GE25149 [Drosophila yakuba] Length = 459 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 69/176 (39%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + + D + + T L++ M ++V + FD KDFL + + Sbjct: 274 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 333 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I++S G + ++ + + + K + S ++ I+++++ + E Sbjct: 334 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGLYLDSKILDIENIELAMGKVMEQG 393 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ + ++ DPE +V +W R+ NP W L+ Sbjct: 394 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 449 >gi|229586715|ref|YP_002845216.1| hypothetical protein RAF_ORF0564 [Rickettsia africae ESF-5] gi|228021765|gb|ACP53473.1| Unknown [Rickettsia africae ESF-5] Length = 211 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 84/229 (36%), Gaps = 25/229 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M +L+FA I F++ +L LG + E+ + G+ V + + + Sbjct: 1 MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSIVKSNKEE 60 Query: 66 KKKDNLDSINELFPIG-----TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 K I I T + M + FDP F+N A+ +++ I+++ ++ Sbjct: 61 KNIPTAQDIKAFKDIIVEHNITAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + +L+D R ++F S SS + K + N ++I + Sbjct: 121 KDAKELSELIDKRYLEEFEKITP---SYGDFFDSSTL---SAKYSEIYMFGNNIFIKLLF 174 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G+ ++ + + WTF RN +W L + + Sbjct: 175 QGK----------NVVD----KIEDLKEEWTFTRNANTKEVDWFLSNIE 209 >gi|115624784|ref|XP_001203738.1| PREDICTED: similar to MGC82677 protein [Strongylocentrotus purpuratus] gi|115633997|ref|XP_001177162.1| PREDICTED: similar to MGC82677 protein [Strongylocentrotus purpuratus] Length = 455 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 62/176 (35%), Gaps = 7/176 (3%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 + I+ D + + T L+ V+ +I+ + F + FL E I Sbjct: 270 ESDNIMVRASKAVTDRVSQLLGGVFSPTELSGVLTEIIKIDPTFTKEGFLKMCEL--EII 327 Query: 115 ---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171 +++ G + I+ Y + S ++ +D +++ + + Sbjct: 328 PNILEAMIRGDLEIIKDWCYEAPYNQLATPIKQATQMGYKFDSKVLDVDMVELSMGKMMD 387 Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN--WVL 225 + I V Q I A + +++ D E +V +W R+ +P W L Sbjct: 388 QGPVLVITFVAQQIMAVRNAKGVVVEGDLEKVMRVTYVWVLCRDQEVLDPTSAWRL 443 >gi|226500730|ref|NP_001147017.1| LOC100280627 [Zea mays] gi|194707278|gb|ACF87723.1| unknown [Zea mays] gi|195606496|gb|ACG25078.1| tim44-like domain containing protein [Zea mays] Length = 303 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 57/141 (40%), Gaps = 9/141 (6%) Query: 96 TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155 T + F ++A Y+ + G ++ K++ R++ + L R+S +V Sbjct: 159 TGYTKNQFYDQALKIYKEVNTLMAHGDTSSLRKILTERMHSTIKNELKRRQSMWNSVHWE 218 Query: 156 LV----GIDDMK-----IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 LV I ++ + +++ + +T+ V + +Y+ ++S D V Sbjct: 219 LVEPAVSIRTLRARMIGLDKNDLDKAFIQLTLEFVTKQKFEAYNSKGAVVSGDKSKEVLV 278 Query: 207 IDIWTFVRNIPPSNPNWVLIS 227 DIW F R++ W + Sbjct: 279 KDIWVFERSLFHPGAYWRVCG 299 >gi|195353703|ref|XP_002043343.1| GM10044 [Drosophila sechellia] gi|194127457|gb|EDW49500.1| GM10044 [Drosophila sechellia] Length = 458 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 64/149 (42%), Gaps = 3/149 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ M ++V + FD KDFL + + I++S G + ++ + + Sbjct: 300 TELSETMTELVKIDPSFDQKDFLRDCETDIIPNILESIVRGDLEILKDWCFESTFNIIAN 359 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K + S ++ I+++++ + E + I Q I D+ + ++ DP Sbjct: 360 PIKEAKKAGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKSQVVEGDP 419 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 E +V +W R+ NP W L+ Sbjct: 420 EKVMRVHYVWVLCRDRNELNPKAAWRLME 448 >gi|34580481|ref|ZP_00141961.1| hypothetical protein [Rickettsia sibirica 246] gi|157828477|ref|YP_001494719.1| hypothetical protein A1G_03400 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933195|ref|YP_001649984.1| hypothetical protein RrIowa_0720 [Rickettsia rickettsii str. Iowa] gi|28261866|gb|EAA25370.1| unknown [Rickettsia sibirica 246] gi|157800958|gb|ABV76211.1| hypothetical protein A1G_03400 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908282|gb|ABY72578.1| hypothetical protein RrIowa_0720 [Rickettsia rickettsii str. Iowa] Length = 211 Score = 86.5 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 84/229 (36%), Gaps = 25/229 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M +L+FA I F++ +L LG + E+ + G+ V + + + Sbjct: 1 MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSIVKSNKEE 60 Query: 66 KKKDNLDSINELFPIG-----TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 K I I T + M + FDP F+N A+ +++ I+++ ++ Sbjct: 61 KNIPTAQDIKAFKDIIVEHNITAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + +L+D R ++F S SS + K + N ++I + Sbjct: 121 KDAKELSELIDKRYLEEFEKITP---SYGDFFDSSAL---SAKYSEIYMFGNNIFIKLLF 174 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G+ ++ + + WTF RN +W L + + Sbjct: 175 QGK----------NVVD----KIEDLKEEWTFTRNANTKEVDWFLSNIE 209 >gi|321466881|gb|EFX77874.1| hypothetical protein DAPPUDRAFT_305300 [Daphnia pulex] Length = 420 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 60/149 (40%), Gaps = 7/149 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138 T +++ + +I + DF ++FL + Y+ I +++ G + ++ + Sbjct: 262 TEMSEALTEICKMDPDFSKEEFLK--KCEYDIIPNVLEAMARGDLDILKDWCHEGPFNIL 319 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 + + S + ++ +D++ + + E + I Q I DK N ++ Sbjct: 320 STPIKHALSQGYVIDCRVLDVDNVDLAMGKVMEQGPILVITFTAQQIMCVRDKANNIVEG 379 Query: 199 DPEIFGKVIDIWTFVRNIPPSNPN--WVL 225 D E +V +W R+ + N W L Sbjct: 380 DAEKVMRVNYVWVLCRDQTELDVNAAWRL 408 >gi|115923274|ref|XP_783807.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115954833|ref|XP_001197316.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 368 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 62/176 (35%), Gaps = 7/176 (3%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 + I+ D + + T L+ V+ +I+ + F + FL E I Sbjct: 183 ESDNIMVRASKAVTDRVSQLLGGVFSPTELSGVLTEIIKIDPTFTKEGFLKMCEL--EII 240 Query: 115 ---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171 +++ G + I+ Y + S ++ +D +++ + + Sbjct: 241 PNILEAMIRGDLEIIKDWCYEAPYNQLATPIKQATQMGYKFDSKVLDVDMVELSMGKMMD 300 Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN--WVL 225 + I V Q I A + +++ D E +V +W R+ +P W L Sbjct: 301 QGPVLVITFVAQQIMAVRNAKGVVVEGDLEKVMRVTYVWVLCRDQEVLDPTSAWRL 356 >gi|260898311|ref|ZP_05906807.1| import inner membrane translocase, subunit Tim44 [Vibrio parahaemolyticus Peru-466] gi|260901532|ref|ZP_05909927.1| import inner membrane translocase, subunit Tim44 [Vibrio parahaemolyticus AQ4037] gi|308088422|gb|EFO38117.1| import inner membrane translocase, subunit Tim44 [Vibrio parahaemolyticus Peru-466] gi|308110872|gb|EFO48412.1| import inner membrane translocase, subunit Tim44 [Vibrio parahaemolyticus AQ4037] Length = 237 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 16/156 (10%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 IL+ I F +F +RG+LG K G N++ F G ++ Sbjct: 96 ILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNASKFEQPNMQNFEQQPNTNAGG 155 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + FD F+N +R Y + ++ ++ IE+ V Sbjct: 156 FTGFGAQTDVPHNYP----------PGFDQAAFINGSREHYRILQGAWNHNQLDTIEEYV 205 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN 166 +++D + R E + ++ + D +I+ Sbjct: 206 SPSLFEDLK---AERAKLEGEQHTDVMYV-DAEIVR 237 >gi|221130340|ref|XP_002162926.1| PREDICTED: similar to translocase of inner mitochondrial membrane 44 [Hydra magnipapillata] Length = 325 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 60/175 (34%), Gaps = 7/175 (4%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 + +I + L + + + +I + F+ F+ E +E I Sbjct: 140 ESDNVIIRATRVVTNKLSDVFSDVFSQSEQAATIAEITKIDPSFNKDKFIKECE--FEII 197 Query: 115 ---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171 ++++ G + ++ V+ + + + +S ++ I D+ ++ A I E Sbjct: 198 PTVLEAYLRGDIECLQDWCHEGVFSILSTQIKNNSAQGLVNESRILDIRDVDLVMAKIME 257 Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN--PNWV 224 + + Q +S D +I + V +W R+ + W Sbjct: 258 QGPVLILTFQAQQVSIMKDSKGKIIEGGEDNIESVNYVWAMCRDQSIYDHHSAWR 312 >gi|15892527|ref|NP_360241.1| hypothetical protein RC0604 [Rickettsia conorii str. Malish 7] gi|15619688|gb|AAL03142.1| unknown [Rickettsia conorii str. Malish 7] Length = 211 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 84/229 (36%), Gaps = 25/229 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M +L+FA I F++ +L LG + E+ + G+ + + + + Sbjct: 1 MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPIIKDVTYSIVKSNKEE 60 Query: 66 KKKDNLDSINELFPIG-----TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 K I I T + M + FDP F+N A+ +++ I+++ ++ Sbjct: 61 KNIPTAQDIKAFKDIIVEHNITAIVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + +L+D R ++F S SS + K + N ++I + Sbjct: 121 KDAKELSELIDKRYLEEFEKITP---SYGDFFDSSAL---SAKYSEIYMFGNNIFIKLLF 174 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G+ ++ + + WTF RN +W L + + Sbjct: 175 QGK----------NVVD----KIEDLKEEWTFTRNANTKEVDWFLSNIE 209 >gi|145349615|ref|XP_001419224.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579455|gb|ABO97517.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 221 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 54/194 (27%), Gaps = 15/194 (7%) Query: 49 YVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR 108 R E + + F + F EA+ Sbjct: 17 AEPYAGPPRRPTLAEWATTSKGWRYAYEAATSRAKDAYALSKCAKEVRGFTLEGFKQEAK 76 Query: 109 NSYEAIVDSFFE-GKVHAI----EKLVDSRVYQDFNDSLSTRKSNEK-NVKSSLVGIDDM 162 Y+ I S G + + D +R+ V +L ID+ Sbjct: 77 QMYKMINASSANVGHGKTLEHETRHATTDKTQSDLKRERKSRERGGWARVDWNLESIDEC 136 Query: 163 KIINASIE---------ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213 +++ + +T R G+ A+YD L++ DP+ V D W F Sbjct: 137 QVVRGRLIMANANDSNGPGFAQLTTRFRGKQRFAAYDARGRLVAGDPDEILDVEDFWVFE 196 Query: 214 RNIPPSNPNWVLIS 227 + N W L Sbjct: 197 HGLKIPNARWRLAG 210 >gi|238650294|ref|YP_002916146.1| hypothetical protein RPR_00625 [Rickettsia peacockii str. Rustic] gi|238624392|gb|ACR47098.1| hypothetical protein RPR_00625 [Rickettsia peacockii str. Rustic] Length = 211 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 84/230 (36%), Gaps = 27/230 (11%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSK------RDERGI 59 M +L+FA I F++ +L LG + E+ + G+ V + + Sbjct: 1 MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSIVKSNKEE 60 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + I I T + M + FDP F+N A+ +++ I+++ + Sbjct: 61 KNIPTAQDIKVFKDIIVEHNI-TAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAY 119 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 + + +L+D R ++F S SS + K + N ++I + Sbjct: 120 KKDAKELSELIDKRYLEEFEKITP---SYGDFFDSSAL---SAKYSEIYMFGNNIFIKLL 173 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G+ ++ + + WTF RN +W L + + Sbjct: 174 FQGK----------NVVD----KIEDLKEEWTFTRNANTKEVDWFLSNIE 209 >gi|260310504|gb|ACX36515.1| RE11601p [Drosophila melanogaster] Length = 428 Score = 85.7 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + + D + + T L++ M ++V + FD KDFL + + Sbjct: 243 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 302 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I++S G + ++ + + + K + S ++ I+++++ E Sbjct: 303 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGVYLDSKILDIENIELAMGKFMEQG 362 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ + ++ DPE +V +W R+ NP W L+ Sbjct: 363 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 418 >gi|24648138|ref|NP_650786.2| CG11779, isoform A [Drosophila melanogaster] gi|78706780|ref|NP_001027193.1| CG11779, isoform D [Drosophila melanogaster] gi|7300484|gb|AAF55639.1| CG11779, isoform A [Drosophila melanogaster] gi|71854566|gb|AAZ52532.1| CG11779, isoform D [Drosophila melanogaster] Length = 459 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 69/176 (39%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + + D + + T L++ M ++V + FD KDFL + + Sbjct: 274 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 333 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I++S G + ++ + + + K + S ++ I+++++ + E Sbjct: 334 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGVYLDSKILDIENIELAMGKVMEQG 393 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ + ++ DPE +V +W R+ NP W L+ Sbjct: 394 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 449 >gi|195388820|ref|XP_002053076.1| GJ23681 [Drosophila virilis] gi|194151162|gb|EDW66596.1| GJ23681 [Drosophila virilis] Length = 428 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 69/178 (38%), Gaps = 7/178 (3%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 + + D + + T L++ M ++V + +FD K+FL + + I Sbjct: 243 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPNFDQKEFLYDCEK--DII 300 Query: 115 ---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171 +++ G + ++ Y + K + + S ++ I+++++ + E Sbjct: 301 PNVLEAIVRGDLEILKDWCFESTYNIIATPIMQAKKSGLYLDSKILDIENIELAMGKVME 360 Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ ++ +P+ +V +W R+ NP W L+ Sbjct: 361 QGPVLIITFQAQQIMCVRDQKAQVVEGNPDKVMRVHYVWVLCRDRNELNPKAAWRLME 418 >gi|326796036|ref|YP_004313856.1| import inner membrane translocase subunit Tim44 [Marinomonas mediterranea MMB-1] gi|326546800|gb|ADZ92020.1| import inner membrane translocase subunit Tim44 [Marinomonas mediterranea MMB-1] Length = 284 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 80/232 (34%), Gaps = 45/232 (19%) Query: 6 MDSGDFL------ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59 M SG F ILLFA I F+ + KR + Sbjct: 89 MGSGAFDGISFGDILLFALI-GFLIYK--------------------FFIAPKKRAAQQA 127 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 G G ++ + P+ + + + F+ + F+ EA+N Y A+ ++ Sbjct: 128 QAAGHGAYREMPQDSFQPSPMAGGAGFGGQPEIQLPPGFNEQAFVAEAKNHYIALQKAWD 187 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNE-KNVKSSLVGIDDMKIINASIEENTVYITI 178 + I++ V +Y R K+ +V + + ++ +T I++ Sbjct: 188 DSNFETIQEYVSPELYNMLK---EERAKLGADKPKTDVVSLM-VDLVRGEFIGSTASISL 243 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + G K+ + +IW +N+ ++ +WV++ + Sbjct: 244 QFSGWI------KEG-------SETSETKEIWHLEKNMSDASSSWVIVGIQQ 282 >gi|114775481|ref|ZP_01451049.1| import inner membrane translocase, subunit Tim44 [Mariprofundus ferrooxydans PV-1] gi|114553592|gb|EAU55973.1| import inner membrane translocase, subunit Tim44 [Mariprofundus ferrooxydans PV-1] Length = 289 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 74/219 (33%), Gaps = 29/219 (13%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 I++ + +F LR K++ P ++G G+ D D Sbjct: 99 IVMIGAVLALLFFFLR----KRS---TPAQPSYAGGQPMHD--------YGQSYTTDVED 143 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + E + +R D D K F+ A+ Y + ++ G I K + Sbjct: 144 QVYEENTPRDPVGTALR------PDIDEKHFIPAAKQIYVRMQKAWDNGDTEDIRKFCTA 197 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 + + +++ ++ + ++ ++ ++ +E + ++ + + D Sbjct: 198 EI----AERIASDMKPGTENRTEVATLN-AELADSWVESDLEWVAVNFTAMLREQTLDAS 252 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + + +V ++W F +P W L + Sbjct: 253 GTTLD---DQTAEVNEVWIFQHAPKSDDPTWYLAGIQQA 288 >gi|302836449|ref|XP_002949785.1| hypothetical protein VOLCADRAFT_104441 [Volvox carteri f. nagariensis] gi|300265144|gb|EFJ49337.1| hypothetical protein VOLCADRAFT_104441 [Volvox carteri f. nagariensis] Length = 393 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 55/150 (36%), Gaps = 3/150 (2%) Query: 64 KGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 + + + +L G+ ++ MR+I FD F+ + +V +F + Sbjct: 209 ETSDHPVVHKVEDLKARMFTGSEASRAMREIRVRDPAFDMNRFVQSVKLDAPTVVRAFLK 268 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + A+ + + + F S++ I D++I+ + ++ +I + Sbjct: 269 HDLEALSQHCGPELLERFAGIFKHFNEQGVFEDPSILFIGDVEIVEVRLMDDDPFIIAQF 328 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIW 210 Q + + DK +I +V W Sbjct: 329 HCQQLKCTRDKFGNVIDGSANQIQRVYYFW 358 >gi|67459060|ref|YP_246684.1| hypothetical protein RF_0668 [Rickettsia felis URRWXCal2] gi|67004593|gb|AAY61519.1| unknown [Rickettsia felis URRWXCal2] Length = 211 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 82/229 (35%), Gaps = 25/229 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M +L+FA I F++ +L LG + E+ + G+ V + + + Sbjct: 1 MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSTVKSNKEE 60 Query: 66 KKKDNLDSINELFPIG-----TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 K I I T + M + FDP F+N A+ +++ I+++ ++ Sbjct: 61 KNIPTAQDIKAFKDIIVEHNITAVVDGMEQVHKHLYSFDPIKFINNAKTAFQMIIEAAYK 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + +L+D R ++F K + K + N ++I + Sbjct: 121 KDAKELSELIDKRYLEEFE------KITPSYGDFFDLSALSAKYSEIYMFGNNIFIKLLF 174 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G+ ++ + + WTF RN +W L + + Sbjct: 175 QGK----------NVVD----KIEDLKEEWTFTRNANTKEVDWFLSNIE 209 >gi|24648140|ref|NP_732403.1| CG11779, isoform B [Drosophila melanogaster] gi|7300485|gb|AAF55640.1| CG11779, isoform B [Drosophila melanogaster] Length = 428 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 69/176 (39%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + + D + + T L++ M ++V + FD KDFL + + Sbjct: 243 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 302 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I++S G + ++ + + + K + S ++ I+++++ + E Sbjct: 303 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGVYLDSKILDIENIELAMGKVMEQG 362 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ + ++ DPE +V +W R+ NP W L+ Sbjct: 363 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 418 >gi|47225693|emb|CAG08036.1| unnamed protein product [Tetraodon nigroviridis] Length = 397 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 61/147 (41%), Gaps = 3/147 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLN-EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T +++V+ +I+ V FD FL R+ I+++ +G++ ++ Y Sbjct: 239 TEMSEVLTEILKVDPSFDKDSFLKLCERDIIPNILEAMIQGELDVLKDWCYEATYSQLAH 298 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K+ S ++ ID++ + + + + I Q + + ++ DP Sbjct: 299 PIQQAKATGLKFHSKILDIDNIDLAMGKMMDQGPVLIITFQAQLVMVIRNPKGEVVEGDP 358 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVL 225 + +++ +W R+ NP W L Sbjct: 359 DKVIRMMYVWALCRDQEELNPYAAWRL 385 >gi|195452294|ref|XP_002073291.1| GK13236 [Drosophila willistoni] gi|194169376|gb|EDW84277.1| GK13236 [Drosophila willistoni] Length = 457 Score = 85.3 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 65/149 (43%), Gaps = 3/149 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ M ++V + +FD K+FL++ + I+++ G + ++ Y + Sbjct: 299 TELSETMTELVKIDPNFDQKEFLHDCETDIIPNILEAIVRGDLDILKDWCFESTYSIIST 358 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K + S ++ I+++++ + E + I Q I D+ ++ DP Sbjct: 359 PILNAKKTGLYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKAQVVEGDP 418 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 E +V +W R+ NP W L+ Sbjct: 419 EKVMRVHYVWVLCRDRNELNPKAAWRLME 447 >gi|212722222|ref|NP_001131676.1| hypothetical protein LOC100193036 [Zea mays] gi|194692218|gb|ACF80193.1| unknown [Zea mays] Length = 474 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 49/158 (31%) Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 D R + +NE T R+I F DF+ + + + Sbjct: 283 AEDVRERWETSDNPVVQKIQDLNESLLEETSAAVTFREIRQRDPSFSLSDFVADVQEMIK 342 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 ++ ++ +G ++ V + S ++ I + ++ + + Sbjct: 343 PVLTAYSKGDAETLKNYCTKEVIERCKGEREAYASQGIFFDHKILHISEADVLETKMFGS 402 Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210 + I +R Q I D++ + + V W Sbjct: 403 SPIIILRFQTQQIYCVRDREGQVTEGGQDTIQTVFYSW 440 >gi|194900032|ref|XP_001979561.1| GG16152 [Drosophila erecta] gi|190651264|gb|EDV48519.1| GG16152 [Drosophila erecta] Length = 459 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 69/176 (39%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + + D + + T L++ M ++V + FD KDFL + + Sbjct: 274 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPCFDQKDFLRDCETDIIPN 333 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I++S G + ++ + + + K + S ++ I+++++ + E Sbjct: 334 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGLYLDSKILDIENIELAMGKVMEQG 393 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ + ++ DPE +V +W R+ NP W L+ Sbjct: 394 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 449 >gi|242012401|ref|XP_002426921.1| import inner membrane translocase subunit TIM44, putative [Pediculus humanus corporis] gi|212511150|gb|EEB14183.1| import inner membrane translocase subunit TIM44, putative [Pediculus humanus corporis] Length = 474 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 3/147 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ + +IV V F FL++ + I+++ G + + Y + Sbjct: 316 TELSETLTEIVKVDPGFTKAKFLHQCETDIIPNILEAMVRGDLDILRDWCHDGPYNLLSQ 375 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K+ + S ++ I+ + + I + + I Q I DK+N +I DP Sbjct: 376 PIKQIKAMGGKLDSKILDIEGLDLTVGKIMDQGPVLIITFTCQQIQCVRDKNNKVIDGDP 435 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVL 225 + +V +W R+ +P W L Sbjct: 436 QKVMRVNYVWALSRDKSVLDPKAAWRL 462 >gi|91206049|ref|YP_538404.1| hypothetical protein RBE_1234 [Rickettsia bellii RML369-C] gi|157826585|ref|YP_001495649.1| hypothetical protein A1I_01080 [Rickettsia bellii OSU 85-389] gi|91069593|gb|ABE05315.1| unknown [Rickettsia bellii RML369-C] gi|157801889|gb|ABV78612.1| hypothetical protein A1I_01080 [Rickettsia bellii OSU 85-389] Length = 211 Score = 84.5 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 85/229 (37%), Gaps = 25/229 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M +L+FA I FF+ +L LG + ++ + G+ V + + Sbjct: 1 MSPQIIELLIFAGIAFFIINKLITTLGATSDDDPAKQKSYFGEPVIKDVTHSSNKSYEEE 60 Query: 66 KKKDNLDSINE-----LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 K I + T + M + F P F+N A+ +++ I+++ ++ Sbjct: 61 KDLPTAQDIKTFKNLIVEQNITAVVDGMETVHKRLNAFQPIKFINNAKIAFQMIIEAAYK 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + + +LVD R ++F +S S S+ + K N ++I + Sbjct: 121 NQTEELAELVDKRFLEEFEK-ISD--SYGNFFDSTALN---AKYSEIYTFGNNIFIKLLF 174 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G+ ++ ++ + WTF RN +W L + + Sbjct: 175 QGK----------NVVD----KIEELKEEWTFTRNANTKEVDWFLSNIE 209 >gi|241834608|ref|XP_002415012.1| mitochondrial import inner membrane translocase, subunit TIM44, putative [Ixodes scapularis] gi|215509224|gb|EEC18677.1| mitochondrial import inner membrane translocase, subunit TIM44, putative [Ixodes scapularis] Length = 415 Score = 84.5 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 59/176 (33%), Gaps = 7/176 (3%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 + + D + I T L++V+ +I + FD +FL + + I Sbjct: 230 ESDNPLVRASRTLTDKVSDIFGGLFQKTELSEVLTEICKMDPAFDKNEFLRQCET--DII 287 Query: 115 ---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171 +++ G + + + + + S ++ + ++ + I E Sbjct: 288 PNVLEAIVRGDLEILRDWCHDAPFNVLSTPIKQAAQLGYRFDSKVLDVTNVDLAMGKIME 347 Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 + I Q I + ++ DPE ++ W R+ +P W L Sbjct: 348 QGPVLIITFQSQQIMVVRNAKGDVVEGDPEKIMRMHYAWVLCRDQNELDPRAAWKL 403 >gi|326511515|dbj|BAJ91902.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326516904|dbj|BAJ96444.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 481 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 47/140 (33%) Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + INE T R+I F DF+ + + + ++ ++ +G + ++K Sbjct: 308 IQDINETIFEETATAASFREIRRRDPSFSLSDFIGDVQEMIKPVLTAYSKGDLKTLKKYC 367 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 + + S ++ I D + + +T I + Q I D Sbjct: 368 TKEILERCEGERKGYASQGIFFDHKILHISDADVRETKMLGSTPIILVMFRTQEIHCIRD 427 Query: 191 KDNLLISSDPEIFGKVIDIW 210 K+ + + V W Sbjct: 428 KEGKVTEGGQDSIRTVYYQW 447 >gi|62897685|dbj|BAD96782.1| translocase of inner mitochondrial membrane 44 homolog [Homo sapiens] Length = 452 Score = 84.2 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 61/149 (40%), Gaps = 7/149 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138 T +++V+ +I+ V FD FL + N + I +++ G++ ++ Y Sbjct: 294 TEMSEVLTEILRVDPAFDKDRFLKQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 351 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 + K+ S ++ ID++ + + E + I Q + + ++ Sbjct: 352 AHPIQQAKALGLQFHSRILDIDNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKGEVVEG 411 Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 DP+ +++ +W R+ NP W L Sbjct: 412 DPDKVLRMLYVWALCRDQDELNPYAAWRL 440 >gi|224062145|ref|XP_002300777.1| predicted protein [Populus trichocarpa] gi|222842503|gb|EEE80050.1| predicted protein [Populus trichocarpa] Length = 484 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 19/167 (11%), Positives = 58/167 (34%), Gaps = 8/167 (4%) Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + +++ + ++I F DF+ E + + +++++ +G + ++K Sbjct: 312 IQDVSDSIFQESDAAASFKEIRRKDPSFSLMDFVAEVQEAVRPVLNAYIKGDIDTLKKYC 371 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 V +++ + ++ I D+++ + + I + Q + D Sbjct: 372 TPEVINRCEAEHKAFQAHGIFFDNKILHITDVEVRETKMMGTSPIIIVVFQTQQVHCVRD 431 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSN-------PNWVLISTKL 230 + + + V W +R + P W L+ + Sbjct: 432 RHGAITEGGQDTIHTVYYAWA-MRQVDAEELGGGAIYPIWKLMEMQQ 477 >gi|332852444|ref|XP_003316109.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44 isoform 1 [Pan troglodytes] Length = 452 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 61/149 (40%), Gaps = 7/149 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138 T +++V+ +I+ V FD FL + N + I +++ G++ ++ Y Sbjct: 294 TEMSEVLTEILRVDPAFDKDRFLKQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 351 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 + K+ S ++ ID++ + + E + I Q + + ++ Sbjct: 352 AHPIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEG 411 Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 DP+ +++ +W R+ NP W L Sbjct: 412 DPDKVLRMLYVWALCRDQDELNPYVAWRL 440 >gi|33636719|ref|NP_006342.2| mitochondrial import inner membrane translocase subunit TIM44 precursor [Homo sapiens] gi|25014073|sp|O43615|TIM44_HUMAN RecName: Full=Mitochondrial import inner membrane translocase subunit TIM44; Flags: Precursor gi|21708003|gb|AAH33628.1| Translocase of inner mitochondrial membrane 44 homolog (yeast) [Homo sapiens] gi|119589360|gb|EAW68954.1| translocase of inner mitochondrial membrane 44 homolog (yeast), isoform CRA_a [Homo sapiens] gi|119589361|gb|EAW68955.1| translocase of inner mitochondrial membrane 44 homolog (yeast), isoform CRA_a [Homo sapiens] gi|123980796|gb|ABM82227.1| translocase of inner mitochondrial membrane 44 homolog (yeast) [synthetic construct] gi|123995621|gb|ABM85412.1| translocase of inner mitochondrial membrane 44 homolog (yeast) [synthetic construct] gi|158260291|dbj|BAF82323.1| unnamed protein product [Homo sapiens] gi|307685105|dbj|BAJ20483.1| translocase of inner mitochondrial membrane 44 homolog [synthetic construct] Length = 452 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 61/149 (40%), Gaps = 7/149 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138 T +++V+ +I+ V FD FL + N + I +++ G++ ++ Y Sbjct: 294 TEMSEVLTEILRVDPAFDKDRFLKQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 351 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 + K+ S ++ ID++ + + E + I Q + + ++ Sbjct: 352 AHPIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEG 411 Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 DP+ +++ +W R+ NP W L Sbjct: 412 DPDKVLRMLYVWALCRDQDELNPYAAWRL 440 >gi|2809420|gb|AAB97740.1| translocase of inner mitochondrial membrane Tim44 precursor [Homo sapiens] Length = 452 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 61/149 (40%), Gaps = 7/149 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138 T +++V+ +I+ V FD FL + N + I +++ G++ ++ Y Sbjct: 294 TEMSEVLTEILRVDPAFDKDRFLKQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 351 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 + K+ S ++ ID++ + + E + I Q + + ++ Sbjct: 352 AHPIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEG 411 Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 DP+ +++ +W R+ NP W L Sbjct: 412 DPDKVLRMLYVWALCRDQDELNPYAAWRL 440 >gi|332296059|ref|YP_004437982.1| import inner membrane translocase subunit Tim44 [Thermodesulfobium narugense DSM 14796] gi|332179162|gb|AEE14851.1| import inner membrane translocase subunit Tim44 [Thermodesulfobium narugense DSM 14796] Length = 316 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 61/147 (41%), Gaps = 5/147 (3%) Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 +++ +++I + F +D ++ + + I ++ E + L + ++ +F + Sbjct: 171 DVDRGLKEIERAFPSFSEEDLRSKIKEIFVNIQKAWSEKNFTMLRNLTTNEMFLNFQKQI 230 Query: 143 STRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI 202 N + + M +++A +E+ +Y+T +I D ++ ++ + + Sbjct: 231 EELNKNGITNFVENISVKRMDLVDAWMEDEKIYVTYKIEATMTDYDVDVNDNILRGNKDK 290 Query: 203 FGKVIDIWTFVRNIPPSNP-NWVLIST 228 ++W+FV + W L + Sbjct: 291 LIDFQELWSFV----SKDSIKWELSAI 313 >gi|66519233|ref|XP_395866.2| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-like isoform 1 [Apis mellifera] Length = 456 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 64/180 (35%), Gaps = 13/180 (7%) Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-E 112 + + + + I T L++ + +I + +FD FL Y E Sbjct: 270 EESDNPVIRASRLLTEKVTDIVGGLFQKTDLSETLTEICKLDPNFDRIQFLK-----YCE 324 Query: 113 A-----IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167 I+++ G + ++ Y+ L + + + ++ I+++ +I Sbjct: 325 TDIIPNILEAMVRGNLEILKDWCHEAPYKLIAQPLIQVEKLGYQLDNKILDINNVDLIMG 384 Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 + E + I Q I D +I DPE +V IW R+ NP W L Sbjct: 385 KVMEQGPVLIISFQCQQIMCVRDAKKNVIEGDPEKVMRVNYIWVLCRDPTELNPKAAWRL 444 >gi|170584097|ref|XP_001896855.1| Tim44-like domain containing protein [Brugia malayi] gi|158595793|gb|EDP34297.1| Tim44-like domain containing protein [Brugia malayi] Length = 773 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 66/154 (42%), Gaps = 8/154 (5%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138 + +++V+ +I V +F+ ++L E I +++F G + ++ R Y Sbjct: 614 SEISEVLSEIQKVDPNFEKNEWLRFCEK--EIIPNVLEAFIRGDLKILKDWCYERAYNIL 671 Query: 139 NDSLSTRKSNE-KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197 + +++ K S ++ I+ ++++ + E+ I I ++ + + ++ Sbjct: 672 SATVNEYKKINFNTTDSRIIDINRVEMVTGKMMEHGPVIIITFQAYMVNIVRNMEGKVVE 731 Query: 198 SDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTK 229 DP +V +W R++ NP W ++ Sbjct: 732 GDPNSPVRVHHVWVMCRDMEEYNPRVAWKVLEVH 765 >gi|222055934|ref|YP_002538296.1| import inner membrane translocase subunit Tim44 [Geobacter sp. FRC-32] gi|221565223|gb|ACM21195.1| import inner membrane translocase subunit Tim44 [Geobacter sp. FRC-32] Length = 315 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 62/159 (38%), Gaps = 7/159 (4%) Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 N P+ ++ + +I S+ FD + F + +++ I ++ + + L+ + Sbjct: 160 NSSLPVADTVDSGIANIRSMDASFDEQRFKDSVMDTFFRIQGAWMNRDLAPVSILLTEEM 219 Query: 135 YQDFNDSLST--RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY-DK 191 + +S R +++ + + ++I A E +IT I + + D Sbjct: 220 KNILQEDVSRLLRDRQVNRLEN--IAVRSVEIAEAWQESGQDFITASIYANLLDYTTDDA 277 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++S + K + WTF R + + W L + Sbjct: 278 TGAVVSGNRTEPVKFEEYWTFTRPVGAN--AWRLSAIDQ 314 >gi|115471689|ref|NP_001059443.1| Os07g0409700 [Oryza sativa Japonica Group] gi|50508458|dbj|BAD30582.1| mitochondrial inner membrane translocating protein-like protein [Oryza sativa Japonica Group] gi|113610979|dbj|BAF21357.1| Os07g0409700 [Oryza sativa Japonica Group] gi|215686787|dbj|BAG89637.1| unnamed protein product [Oryza sativa Japonica Group] gi|215701468|dbj|BAG92892.1| unnamed protein product [Oryza sativa Japonica Group] gi|218199472|gb|EEC81899.1| hypothetical protein OsI_25725 [Oryza sativa Indica Group] gi|222636882|gb|EEE67014.1| hypothetical protein OsJ_23936 [Oryza sativa Japonica Group] Length = 475 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 48/161 (29%), Gaps = 6/161 (3%) Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 D R + +NE T R+I F DF A + E Sbjct: 284 AEDVRERWETSDNPVVQKIQDLNESIFEETATAVSFREIRQRDPSFSLPDF---AGDVQE 340 Query: 113 AI---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 I + ++ +G V ++K V + S ++ I D + + Sbjct: 341 MIKPVLTAYSKGDVKTLKKYCTKEVIERCKGERDAYASQGIFFDHKILHISDADVRETKM 400 Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210 +T I + Q I D++ + + V W Sbjct: 401 MGSTPIIIVGFQTQQIYCVRDREGQVTEGGQDTIQTVFYAW 441 >gi|332701192|ref|ZP_08421280.1| import inner membrane translocase subunit Tim44 [Desulfovibrio africanus str. Walvis Bay] gi|332551341|gb|EGJ48385.1| import inner membrane translocase subunit Tim44 [Desulfovibrio africanus str. Walvis Bay] Length = 313 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 77/227 (33%), Gaps = 25/227 (11%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 MD IL+FA + F ++ ++ +E ++G + G Sbjct: 111 MDFLLIGILIFAGVMVF---RMFAA--RRQQSEYSYAGAAQRQAEAPVDQGSW-----GG 160 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + D L S + + R S F+ +FL A+ Y + S+ + Sbjct: 161 SQWDKLRSAPASGQANGQADSQARP-GSNVPGFNEDEFLRGAKMVYTRLQASWDARDLED 219 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 I + VY ++ + + + ++ + + + +++ + V T+ Sbjct: 220 IREFTSPEVY----AEIARQAAQDPTPSTTEILLVNARLLEVKQQSAQVLATVYFDVLMR 275 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 DK G+V ++W F+R +W L + E Sbjct: 276 ---EDKAQN-------APGQVREVWHFLRENDDPKSSWKLEGIQQLE 312 >gi|332852446|ref|XP_512338.3| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44 isoform 2 [Pan troglodytes] Length = 415 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 61/149 (40%), Gaps = 7/149 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138 T +++V+ +I+ V FD FL + N + I +++ G++ ++ Y Sbjct: 257 TEMSEVLTEILRVDPAFDKDRFLKQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 314 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 + K+ S ++ ID++ + + E + I Q + + ++ Sbjct: 315 AHPIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEG 374 Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 DP+ +++ +W R+ NP W L Sbjct: 375 DPDKVLRMLYVWALCRDQDELNPYVAWRL 403 >gi|296232753|ref|XP_002761726.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44 [Callithrix jacchus] Length = 452 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 60/149 (40%), Gaps = 7/149 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138 T +++ + +I+ V FD FL + N + I +++ G++ ++ Y Sbjct: 294 TEMSEALTEILRVDPAFDKDRFLKQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 351 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 + K+ S ++ ID++ + + E + I Q + + ++ Sbjct: 352 AHPIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMLVRNPKGEVVEG 411 Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 DP+ +++ +W R+ NP W L Sbjct: 412 DPDKVLRMLYVWALCRDQDELNPYAAWRL 440 >gi|255567254|ref|XP_002524608.1| mitochondrial import inner membrane translocase subunit tim44, putative [Ricinus communis] gi|223536161|gb|EEF37816.1| mitochondrial import inner membrane translocase subunit tim44, putative [Ricinus communis] Length = 486 Score = 82.2 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 60/175 (34%), Gaps = 3/175 (1%) Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPI---GTRLNKVMRDIVSVY 95 K F+G S+ + + + I ++ T ++I Sbjct: 279 KRFAGISEPVVTKSQEIAEDMRERWETSDNPIVHKIQDVSDTIFQETDAAASFKEIRRRD 338 Query: 96 TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155 F DF+ E + + +++++ +G + ++K S V +S+ + Sbjct: 339 PSFSLMDFVAEVQEAVRPVLNAYIKGDLETLKKYCTSEVITRCEAEHKAFQSHGIFFDNK 398 Query: 156 LVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210 ++ I ++++ + + I + Q + D+D + + V W Sbjct: 399 ILHISEVEVRETKMMGTSPIIIVAFQTQQVHCVRDRDGAITEGGQDTIHTVYYAW 453 >gi|152997235|ref|YP_001342070.1| import inner membrane translocase subunit Tim44 [Marinomonas sp. MWYL1] gi|150838159|gb|ABR72135.1| import inner membrane translocase subunit Tim44 [Marinomonas sp. MWYL1] Length = 289 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 20/164 (12%), Positives = 60/164 (36%), Gaps = 18/164 (10%) Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 ++ + P+ + + + F+ + F+ EA+N Y + ++ + I Sbjct: 141 PNSTRDNVQPSPMSGISGFGAQPEIKLPPGFNEQAFVAEAKNHYITLQKAWDDNNFDEIL 200 Query: 128 KLVDSRVYQDFNDSLSTRKSNEK-NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 V +Y ++ R ++ ++ ++ + +++ +T I+++ Sbjct: 201 DYVSPELYNLL---VAERATHGDNKPRTEVISLM-AELVRGEYIGSTASISLQFS----- 251 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + D +IW +N+ +N NW ++ + Sbjct: 252 ------GWIKEGD--QTSDTNEIWHLEKNMSDANGNWTIVGIQQ 287 >gi|4103602|gb|AAD01797.1| putative mitochondrial inner membrane protein import receptor [Homo sapiens] Length = 415 Score = 82.2 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 61/149 (40%), Gaps = 7/149 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138 T +++V+ +I+ V FD FL + N + I +++ G++ ++ Y Sbjct: 257 TEMSEVLTEILRVDPPFDKDRFLKQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 314 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 + K+ S ++ ID++ + + E + I Q + + ++ Sbjct: 315 AHPIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEG 374 Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 DP+ +++ +W R+ NP W L Sbjct: 375 DPDKVLRMLYVWALCRDQDELNPYAAWRL 403 >gi|297703381|ref|XP_002828619.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-like [Pongo abelii] Length = 451 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 61/149 (40%), Gaps = 7/149 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138 T +++V+ +I+ V FD FL + N + I +++ G++ ++ Y Sbjct: 293 TEMSEVLTEILRVDPAFDKDRFLKQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 350 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 + K+ S ++ ID++ + + E + I Q + + ++ Sbjct: 351 AHPIQQAKALGLQFHSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEG 410 Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 +P+ +++ +W R+ NP W L Sbjct: 411 NPDEVLRMLYVWALCRDQDELNPYAAWRL 439 >gi|90075058|dbj|BAE87209.1| unnamed protein product [Macaca fascicularis] Length = 453 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 61/149 (40%), Gaps = 7/149 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138 T +++V+ +I+ V FD FL + N + I +++ G++ ++ Y Sbjct: 295 TEMSEVLTEILRVDPAFDKDRFLKQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 352 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 + K+ S ++ ID++ + + E + I Q + + ++ Sbjct: 353 AYPIQQAKALGLQFHSRILDIDNIDLAMGKMMEPGPVLIITFQAQLVMVVRNPKGEVVEG 412 Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 DP+ +++ +W R+ NP W L Sbjct: 413 DPDKVLRMLYVWALYRDQDELNPYAAWRL 441 >gi|17508985|ref|NP_491780.1| hypothetical protein T09B4.9 [Caenorhabditis elegans] gi|6016367|sp|O02161|TIM44_CAEEL RecName: Full=Probable mitochondrial import inner membrane translocase subunit tim-44; Flags: Precursor gi|2039379|gb|AAB53011.1| Hypothetical protein T09B4.9 [Caenorhabditis elegans] Length = 425 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 71/174 (40%), Gaps = 14/174 (8%) Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA-----IVDSFFEG 121 + + I +F +++V+ +I + +FD +++L + E I+++F Sbjct: 252 RGVTEKIGSVFSGQNEVSEVLTEIHKIDANFDKQEWLR-----FCETKIIPNILEAFIRF 306 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNE-KNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + ++ R Y + + + S ++ I+ +++ + E + I Sbjct: 307 DLEVLQSWCHERAYTQLSTVVKEYQKMHFSTKDSRIIDINKVEMATGKMMEQGPVLIISF 366 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKLGE 232 I+ + + D ++ DP+ ++ IW R++ NP W L+ + E Sbjct: 367 QVYMINVTKNADGKVVEGDPDNPKRINHIWVLCRDVEEYNPALAWKLLEVHMQE 420 >gi|222054950|ref|YP_002537312.1| import inner membrane translocase subunit Tim44 [Geobacter sp. FRC-32] gi|221564239|gb|ACM20211.1| import inner membrane translocase subunit Tim44 [Geobacter sp. FRC-32] Length = 321 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 72/222 (32%), Gaps = 24/222 (10%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F ILL A I ++ + K Y + + + G + Sbjct: 118 LFEILLLAGI-GYLIYR----------FVKKNRETAPATYGQTGYQGGTVTPISSGSGYE 166 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + P L + I + FD + F + + + + ++ + + + Sbjct: 167 AV------QPASDDLTTGLSHIRQMDPSFDEQRFNDGVMDMFFKVQGAWMNRDLSPVNGI 220 Query: 130 VDSRVYQDFNDSLST--RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 + + + + R +++ + + +++I E +IT +I + Sbjct: 221 FTDEMRRILQEDVERLLRDRQVNRLEN--IAVRNVEIAEVWQESGQDFITAQIYANLLDY 278 Query: 188 SYDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + D ++S K + WTF R + N W L + Sbjct: 279 TTDDTTGAVVSGSKTDPVKFEEYWTFTRPVG--NNQWRLSAI 318 >gi|157964519|ref|YP_001499343.1| hypothetical protein RMA_0619 [Rickettsia massiliae MTU5] gi|157844295|gb|ABV84796.1| hypothetical protein RMA_0619 [Rickettsia massiliae MTU5] Length = 211 Score = 81.8 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 25/229 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M +L+FA ITF++ +L LG + E+ + G+ + + + + Sbjct: 1 MSPQIIELLIFAVITFYIINKLITTLGSTSEEEQTNQKSYFGEPIIKDVTYSTVKSNKEE 60 Query: 66 KKKDNLDSINELFPIG-----TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 K I I T + M + FDP F+N A+ +++ I+++ ++ Sbjct: 61 KNIPTTQDIKAFKDIIVEHNITAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + +L+D R +F ++ S SS + K + N ++I + Sbjct: 121 KDAKELSELIDKRYLAEFEK-ITP--SYGDFFDSSAL---SAKYSEIYMFGNNIFIKLLF 174 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G+ ++ + + WTF RN +W L + + Sbjct: 175 QGK----------NVVD----KIEDLKEEWTFTRNANTKEVDWFLSNIE 209 >gi|258593729|emb|CBE70070.1| Import inner membrane translocase, subunit Tim44 precursor (fragment) [NC10 bacterium 'Dutch sediment'] Length = 244 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 22/221 (9%), Positives = 74/221 (33%), Gaps = 16/221 (7%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 +++ I ++ V+ +++ + + + + + Sbjct: 38 LVILGGIGLAIYW----VVKQRS-------RPALIEAPYQHQRTWSAEREPERYQGAAAG 86 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + L++ M I + F+ + + + ++ + I ++ Sbjct: 87 QATMVQE--GDLDQGMAHIRQMDPGFETGRLREICTDLFFKVQAAWGNRDLEPIRTILTP 144 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK- 191 ++ + ++ K + + + +++ A E+ Y+T+R + + + D+ Sbjct: 145 EMHTQLGADVMRLRNERKINRLENIAVRSVELTEAWQEQGQDYVTVRFLANLLDYTVDEG 204 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + ++ K + WT R + NP W L + + Sbjct: 205 TSQVVDGSRTDPVKFEEYWTVTRPVG-PNP-WRLAAINQAD 243 >gi|118103065|ref|XP_418174.2| PREDICTED: similar to Translocase of inner mitochondrial membrane 44 homolog (yeast) [Gallus gallus] Length = 451 Score = 81.5 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 68/178 (38%), Gaps = 8/178 (4%) Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 + I + D I LF T +++V+ +I+ V FD FL + + Sbjct: 265 DESDNAFIRASRAVTDKVTDLIGGLFSK-TEMSEVLTEILKVDPSFDKDRFLKQCER--D 321 Query: 113 AI---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 I +++ G++ ++ Y + K+ S ++ ID++ + + Sbjct: 322 IIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKAMGLQFHSRILDIDNIDLAMGKM 381 Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 E + I Q + ++ ++ DP+ +++ +W R+ NP W L Sbjct: 382 MEQGPVLIITFQAQIVMVIKNQKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRL 439 >gi|291241124|ref|XP_002740467.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-like [Saccoglossus kowalevskii] Length = 457 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 62/176 (35%), Gaps = 7/176 (3%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 + + D + + T +++V+ +I+ + F FL + + E I Sbjct: 272 ESDNAVIRASRVVTDKVSQLLGGVFTKTEMSEVLTEIIKIDPHFSKDKFLRQCES--EII 329 Query: 115 ---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171 +++ G + ++ + + + S ++ ID ++++ + E Sbjct: 330 PNILEAMIRGDLDVLKDWCYEAPFNAIAVPVRQAIALGYKFDSKVLDIDYLELVMGKMME 389 Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP--PSNPNWVL 225 + I Q I + + ++ D + +V +W R+ + W L Sbjct: 390 QGPVLIISFQTQQIQVVRNAKHEIVEGDEDKVVRVQYVWVLCRDQEELNPDAAWKL 445 >gi|73987180|ref|XP_542123.2| PREDICTED: similar to Import inner membrane translocase subunit TIM44, mitochondrial precursor [Canis familiaris] Length = 454 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 62/149 (41%), Gaps = 7/149 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138 T +++V+ +I+ V FD + FL + N + I +++ G++ ++ Y Sbjct: 296 TEMSEVLTEILRVDPAFDKERFLQQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 353 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 + K+ S ++ ID++ + + E + I Q + + ++ Sbjct: 354 AHPIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEG 413 Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 DP+ +++ +W R+ NP W L Sbjct: 414 DPDKVLRMLYVWALCRDQDELNPYAAWRL 442 >gi|297275995|ref|XP_001098363.2| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44 [Macaca mulatta] Length = 461 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 61/149 (40%), Gaps = 7/149 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138 T +++V+ +I+ V FD FL + N + I +++ G++ ++ Y Sbjct: 303 TEMSEVLTEILRVDPAFDKDRFLKQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 360 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 + K+ S ++ ID++ + + E + I Q + + ++ Sbjct: 361 AYPIQQAKALGLQFHSRILDIDNIDLAMGKMMEPGPVLIITFQAQLVVVVRNPKGEVVEG 420 Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 DP+ +++ +W R+ NP W L Sbjct: 421 DPDKVLRMLYVWALCRDQDELNPYAAWRL 449 >gi|289741253|gb|ADD19374.1| mitochondrial import inner membrane translocase subunit TIM44 [Glossina morsitans morsitans] Length = 421 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 68/178 (38%), Gaps = 4/178 (2%) Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYE 112 + + D + + T L++ M ++ + +FD K FL + + Sbjct: 234 EESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELCKIDPNFDQKQFLRDCEVDIIP 293 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 I+++ G + ++ Y ++ + + S ++ I+++ ++ + E Sbjct: 294 NILEATVRGDLEILKDWCFESTYNLIATPINQAIKSGLCLDSKILDIENIDLVMGKVMEQ 353 Query: 173 TVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ N ++ DPE +V +W R+ NP W L+ Sbjct: 354 GPVLIITFQAQQIMCLKDRATNKIVEGDPEKVMRVNHVWVLCRDPNELNPKAAWRLLE 411 >gi|311248590|ref|XP_003123248.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-like [Sus scrofa] Length = 454 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 62/149 (41%), Gaps = 7/149 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138 T +++V+ +I+ V FD + FL + N + I +++ G++ ++ Y Sbjct: 296 TEMSEVLTEILRVDPAFDKERFLQQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 353 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 + K+ S ++ ID++ + + E + I Q + + ++ Sbjct: 354 AHPIQQAKALGLQFHSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEG 413 Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 DP+ +++ +W R+ NP W L Sbjct: 414 DPDKVLRMLYVWALCRDQDELNPYAAWRL 442 >gi|300798484|ref|NP_001179583.1| mitochondrial import inner membrane translocase subunit TIM44 [Bos taurus] gi|297476712|ref|XP_002688909.1| PREDICTED: translocase of inner mitochondrial membrane 44 homolog (yeast) [Bos taurus] gi|296485872|gb|DAA27987.1| translocase of inner mitochondrial membrane 44 homolog [Bos taurus] Length = 454 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 60/149 (40%), Gaps = 7/149 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138 T +++V+ +I+ V FD FL + N + I +++ G++ ++ Y Sbjct: 296 TEMSEVLTEILRVDPAFDKDRFLQQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 353 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 + K+ S ++ ID + + + E + I Q + + ++ Sbjct: 354 AHPIQQAKALGLQFHSRILDIDHIDLAMGKMMEQGPVLIITFQAQMVMVIKNPKGEVVEG 413 Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 DP+ +++ +W R+ NP W L Sbjct: 414 DPDKVLRMLYVWALCRDQDELNPYAAWRL 442 >gi|85544427|pdb|2CW9|A Chain A, Crystal Structure Of Human Tim44 C-Terminal Domain Length = 194 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 7/149 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138 T ++V+ +I+ V FD FL + N + I +++ G++ ++ Y Sbjct: 36 TEXSEVLTEILRVDPAFDKDRFLKQCEN--DIIPNVLEAXISGELDILKDWCYEATYSQL 93 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 + K+ S ++ ID++ + E + I Q + + ++ Sbjct: 94 AHPIQQAKALGLQFHSRILDIDNVDLAXGKXVEQGPVLIITFQAQLVXVVRNPKGEVVEG 153 Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 DP+ + + +W R+ NP W L Sbjct: 154 DPDKVLRXLYVWALCRDQDELNPYAAWRL 182 >gi|42569661|ref|NP_181151.3| ATTIM44-2; protein-transmembrane transporting ATPase [Arabidopsis thaliana] gi|53828527|gb|AAU94373.1| At2g36070 [Arabidopsis thaliana] gi|330254108|gb|AEC09202.1| translocase inner membrane subunit 44-2 [Arabidopsis thaliana] Length = 469 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 60/188 (31%), Gaps = 11/188 (5%) Query: 23 VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82 VF +L +G +P K D R + +NE T Sbjct: 260 VFKRL-------SGMSEPVVN----KSQEIAEDVREKWETSDNPIVHKIQDMNERIFEET 308 Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 ++I F DF++E + + +++++ +G ++K + + Sbjct: 309 GSASTYKEIRRRDPSFSLPDFVSEIQEAIRPVLNAYSKGDAKTLKKYCSKELIERCTAEH 368 Query: 143 STRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI 202 S L+ + ++ I + T I +R Q I D+D + + Sbjct: 369 RAFTSQGYFFDHKLLHVSEVDIQETKMMGTTPVIIVRFQTQEIFCVRDQDGKIKEGGQDT 428 Query: 203 FGKVIDIW 210 V W Sbjct: 429 IHTVYYDW 436 >gi|326934236|ref|XP_003213198.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-like [Meleagris gallopavo] Length = 435 Score = 80.7 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 68/178 (38%), Gaps = 8/178 (4%) Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 + I + D I LF T +++V+ +I+ V FD FL + + Sbjct: 249 DESDNAFIRASRAVTDKVTDLIGGLFSK-TEMSEVLTEILKVDPSFDKDRFLKQCER--D 305 Query: 113 AI---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 I +++ G++ ++ Y + K+ S ++ ID++ + + Sbjct: 306 IIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKAMGLQFHSRILDIDNIDLAMGKM 365 Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 E + I Q + ++ ++ DP+ +++ +W R+ NP W L Sbjct: 366 MEQGPVLIITFQAQVVMVIKNQKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRL 423 >gi|332029994|gb|EGI69819.1| Mitochondrial import inner membrane translocase subunit TIM44 [Acromyrmex echinatior] Length = 452 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 64/184 (34%), Gaps = 6/184 (3%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + + D + I T L++ + +I + F FL + + Sbjct: 267 ESDNAVLRASRLLTDKVSDIIGGLFQKTELSETLTEICKLDPTFCKIQFLKDCETDFIPN 326 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G + ++ Y + K S ++ ID++ ++ + E Sbjct: 327 ILEAMIRGDLEILKDWCHEGPYNIISQPHREVKKLGHYSDSKILDIDNVDLVMGKMMEQG 386 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWV---LIST 228 + I Q I + N +I DP+ +V +W R+ NP W L +T Sbjct: 387 PVLIISFQSQQIMCVKNSKNEVIEGDPQKVMRVNYVWVLCRDRTELNPKAAWRLLDLSAT 446 Query: 229 KLGE 232 + Sbjct: 447 SSEQ 450 >gi|307181325|gb|EFN68959.1| Mitochondrial import inner membrane translocase subunit TIM44 [Camponotus floridanus] Length = 452 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 6/157 (3%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T L++ + +I + +F FL + + I+++ G + ++ Y Sbjct: 294 TELSETLTEICKLDPNFSKIQFLKDCETDFIPNILEAMIRGDLEILKDWCHEGPYNLIAQ 353 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 K S ++ ID++ ++ + E + I Q I + N +I DP Sbjct: 354 PHKEVKKLGHYSDSKILDIDNVDLMMGKMMEQGPVLIISFQSQQIMCVRNSKNEVIEGDP 413 Query: 201 EIFGKVIDIWTFVRNIP--PSNPNWV---LISTKLGE 232 + +V +W R+ S W L +T + Sbjct: 414 QKVMRVNYVWVMCRDRTELNSKAAWRLLDLSATSSEQ 450 >gi|224085633|ref|XP_002307643.1| predicted protein [Populus trichocarpa] gi|222857092|gb|EEE94639.1| predicted protein [Populus trichocarpa] Length = 485 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 21/167 (12%), Positives = 62/167 (37%), Gaps = 8/167 (4%) Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + +++ + +++I F DF+ E + + +++++ +G + ++K Sbjct: 313 IQDVSDSIFQESDAAASIKEIRRRDLSFSLMDFVAEVQEAIRPVLNAYMKGDIETLKKYC 372 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 S V +++ + ++ I D+++ + + I + Q + D Sbjct: 373 TSEVINRREAEHKAFEAHGIFFDNKILHISDVEVREIKMMGTSPLIIVAFQTQQVHCIRD 432 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSN-------PNWVLISTKL 230 ++ + + V W +R + P P W L+ + Sbjct: 433 QNGAITEGGQDTIHTVYYAWA-MRQVDPEELGGGAIYPIWKLMEMQQ 478 >gi|196001245|ref|XP_002110490.1| hypothetical protein TRIADDRAFT_54556 [Trichoplax adhaerens] gi|190586441|gb|EDV26494.1| hypothetical protein TRIADDRAFT_54556 [Trichoplax adhaerens] Length = 473 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 58/177 (32%), Gaps = 11/177 (6%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-- 112 + ++ D L + +++ + +I + +F + FL ++ Sbjct: 277 ESDNVVIRATRVVTDRLSDAFSGIFSPSEMSQTLAEISKIDPNFSKEKFL----LHFQHR 332 Query: 113 ---AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 +++++F G + ++ Y + + + ++ + D+ I A I Sbjct: 333 IMPSVLEAFLRGDLPILKDWCHESAYSVLEARIKQLTGMGRKLDFKVLDVRDIDIAMAKI 392 Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWV 224 E + + Q I D ++ D V +W R+ + W Sbjct: 393 MEQGPVLVMTFQAQQILVLRDSSGKVVEGDENHIENVQYVWAMCRDQSIYDAHSAWR 449 >gi|308809217|ref|XP_003081918.1| mitochondrial import inner membrane translocase subunit TIM44, putative (ISS) [Ostreococcus tauri] gi|116060385|emb|CAL55721.1| mitochondrial import inner membrane translocase subunit TIM44, putative (ISS) [Ostreococcus tauri] Length = 182 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 56/130 (43%), Gaps = 1/130 (0%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL-VDSRVYQDFND 140 T + R I S F+ DF+ E R ++ ++ G V A+++ + + + + Sbjct: 16 TEQAEAYRLIRSRDPMFNTNDFIAEVRRDIPKVLGAYLRGDVDALKETNISKEMLERLSG 75 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 ++ K+ + V ++ + +++++ + EN + + Q I+ DK ++ Sbjct: 76 QMNLWKAEGQFVDPRILDLSEVELMEVRMMENEPLVVLTFSCQQINCVRDKSGKIVEGGE 135 Query: 201 EIFGKVIDIW 210 + V +W Sbjct: 136 DDIQSVHYLW 145 >gi|317487361|ref|ZP_07946152.1| Tim44-like domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316921384|gb|EFV42679.1| Tim44-like domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 318 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 77/224 (34%), Gaps = 25/224 (11%) Query: 13 ILL--FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 IL+ F+ F F + R G +P +G F D T K Sbjct: 114 ILIGGLLFLAFKFFSRRRA---ATQGAGQPNAGGFDSLRSTPGSDSTHQRTAAPQSGKGG 170 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 D L + + +D FD ++FL A+ +Y + +++ + + I + Sbjct: 171 FD-WEALTTPSSGQQPLYQDEPKKPAGFDEEEFLRGAKAAYTRLNNAWDKRDLSDIAQFS 229 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 F + + + +K ++ + + + +++ + + Sbjct: 230 TP----AFQKEIQQQAAEDKTPGNTEIMLVNASLLSVDTVGDEQIAQVYF---------- 275 Query: 191 KDNLLISSDP--EIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 N+L+ DP E V +IW FVR + W L + E Sbjct: 276 --NVLLREDPSQEAPIDVREIWHFVRP-ASGDGTWKLDGIQQVE 316 >gi|301773124|ref|XP_002921985.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-like, partial [Ailuropoda melanoleuca] Length = 452 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 62/149 (41%), Gaps = 7/149 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138 T +++V+ +I+ V FD + FL + N + I +++ G++ ++ Y Sbjct: 294 TEMSEVLTEILRVDPAFDKERFLQQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 351 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 + ++ S ++ ID++ + + E + I Q + + ++ Sbjct: 352 AHPIQQARALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEG 411 Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 DP+ +++ +W R+ NP W L Sbjct: 412 DPDKVLRMLYVWALCRDQDELNPYAAWRL 440 >gi|258405234|ref|YP_003197976.1| import inner membrane translocase subunit Tim44 [Desulfohalobium retbaense DSM 5692] gi|257797461|gb|ACV68398.1| import inner membrane translocase subunit Tim44 [Desulfohalobium retbaense DSM 5692] Length = 298 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 75/213 (35%), Gaps = 31/213 (14%) Query: 21 FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPI 80 F ++L G + P S + S D G + + Sbjct: 109 VFFVVRLFKGRGTR----GPSSKSPPRQDQRSAPDRFDTAAAG-------WEHLRSKPAG 157 Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 G + + S+ DFD ++FL A+ Y+ + +++ + + I V++ Sbjct: 158 GPPPPEPTDEEESIPQDFDTQEFLKGAKIVYQRLQEAWDDRDLEDIRGFTTPEVFR---- 213 Query: 141 SLSTRKSNEK---NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197 R+ ++ ++ +V + ++ N + ++++ + D + Sbjct: 214 --EIRRQAKEDPNTSQTEIV-LLQAEVRNVRRDGAVTHVSVAFEALLRESPQDSE----- 265 Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +V ++W F R+ S+ +W+L + Sbjct: 266 -----TRQVRELWHFQRDESRSDSHWLLEGLEQ 293 >gi|255086703|ref|XP_002509318.1| mitochondrial protein translocase family [Micromonas sp. RCC299] gi|226524596|gb|ACO70576.1| mitochondrial protein translocase family [Micromonas sp. RCC299] Length = 415 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 67/183 (36%), Gaps = 3/183 (1%) Query: 29 GVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVM 88 V K G ++ + + + R+ T D F T + Sbjct: 198 SVFSKLEGLKQTPAYKKGEEMLEDARERW--ETSDNPMVHRIQDITEGAFFAETEQAEAY 255 Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK-LVDSRVYQDFNDSLSTRKS 147 R + DF+ F+ E R ++ ++ +G V A+E+ V + + + + Sbjct: 256 RVLQQRVPDFNMNGFIAEVRRDVPKVLGAYLKGDVEALERCAVSKEMLERMGGQMKLWQH 315 Query: 148 NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 + V ++ + +M+++ +N I ++ Q I+ +KD ++ + V Sbjct: 316 EGQFVDPRILHLSEMELVEVRTLDNAPMIVLQFSCQQINCVRNKDGEIVEGAEDDIQSVH 375 Query: 208 DIW 210 +W Sbjct: 376 YLW 378 >gi|148262974|ref|YP_001229680.1| import inner membrane translocase, subunit Tim44 [Geobacter uraniireducens Rf4] gi|146396474|gb|ABQ25107.1| import inner membrane translocase, subunit Tim44 [Geobacter uraniireducens Rf4] Length = 314 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 74/222 (33%), Gaps = 25/222 (11%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F ILL A I ++ + K + + + G +T G Sbjct: 112 LFEILLLAGI-GYLIYR----------FVKKKREANAAYSSYGGAYQGGTVTPVSGGYLG 160 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 N P + + + + FD F + +++ I ++ + + L Sbjct: 161 ND-------PQPDDVAAGLAHVRQMDASFDENRFNDLVMDNFFKIQGAWMNRDLTPVTGL 213 Query: 130 VDSRVYQDFNDSLST--RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 + + + F + L R +++ + + +++I E +IT I + Sbjct: 214 LTDEMKRIFQEDLDRLLRDKQVNRLEN--IAVRNVEIAEVWQESGQDFITALIYANLLDY 271 Query: 188 SY-DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + D +++S K + WT R + N W L + Sbjct: 272 TTDDATGVVVSGSKTEPVKFEEYWTLTRPVG--NNPWRLSAI 311 >gi|268567730|ref|XP_002640066.1| Hypothetical protein CBG12550 [Caenorhabditis briggsae] gi|187029170|emb|CAP31512.1| hypothetical protein CBG_12550 [Caenorhabditis briggsae AF16] Length = 425 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 71/174 (40%), Gaps = 14/174 (8%) Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA-----IVDSFFEG 121 + + I +F +++V+ +I + +FD +++L + E I+++F Sbjct: 252 RGVTERIGSVFSGQNEVSEVLTEIHKIDANFDKQEWLK-----FCETKIIPNILEAFIRF 306 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNE-KNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + ++ R + + + + S ++ I+ +++ + E + I Sbjct: 307 DLEVLQSWCHERAFTQLSTVVKEYQKMHWSTKDSRIIDINKVEMATGKMMEQGPVLIISF 366 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKLGE 232 I+ + + + ++ DP+ ++ IW R++ NP W L+ + E Sbjct: 367 QVYMINVTKNAEGKVVEGDPDNPKRINHIWVLCRDVEEYNPAIAWKLLEVHMQE 420 >gi|87122174|ref|ZP_01078057.1| hypothetical protein MED121_05298 [Marinomonas sp. MED121] gi|86162494|gb|EAQ63776.1| hypothetical protein MED121_05298 [Marinomonas sp. MED121] Length = 281 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 79/232 (34%), Gaps = 47/232 (20%) Query: 6 MDSGDFL------ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59 M SG F ILLFA + F+ K+ + + ++ Sbjct: 88 MGSGAFEGFAFGDILLFALV-GFLIY----------------------KFFIAPKRQQAA 124 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + ++ DS + K + + DF+ F+ EA+N Y A+ ++ Sbjct: 125 ANNAQFRQMPGADSFQQAPNASANPFKAQDPAMQLPPDFNQAAFVAEAKNHYTALQKAWD 184 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNE-KNVKSSLVGIDDMKIINASIEENTVYITI 178 E I V + + R + K+ ++ + D++++ + + IT+ Sbjct: 185 ENDFTEIADYVTPELLAMLQ---AERANYGADKPKTEVISL-DVELVRGEFQGSISSITL 240 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + G K+ E + W +N+ + NW ++ + Sbjct: 241 KFSGWI------KEG-------EDTSDSTEYWHLEKNMSQQSSNWTIVGIQQ 279 >gi|308499393|ref|XP_003111882.1| hypothetical protein CRE_29458 [Caenorhabditis remanei] gi|308268363|gb|EFP12316.1| hypothetical protein CRE_29458 [Caenorhabditis remanei] Length = 425 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 71/174 (40%), Gaps = 14/174 (8%) Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA-----IVDSFFEG 121 + + I +F +++V+ +I + +FD +++L + E I+++F Sbjct: 252 RGVTEKIGSVFSGQNEVSEVLTEIHKIDANFDKQEWLR-----FCETKIIPNILEAFIRF 306 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNE-KNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + ++ R + + + + S ++ I+ +++ + E + I Sbjct: 307 DIEVLQSWCHERAFTQLSTVVKEYQKMHWSTKDSRIIDINKVEMATGKMMEQGPVLIISF 366 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKLGE 232 I+ + + + ++ DP+ ++ IW R++ NP W L+ + E Sbjct: 367 QVYMINVTKNAEGKVVEGDPDNPKRINHIWVLCRDVEEYNPATAWKLLEVHMQE 420 >gi|149015618|gb|EDL74999.1| translocator of inner mitochondrial membrane 44, isoform CRA_b [Rattus norvegicus] Length = 453 Score = 79.2 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 66/174 (37%), Gaps = 3/174 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + ++ D + + T +++V+ +I+ V FD FL++ + Sbjct: 268 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDRFLHQCETDIIPN 327 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G++ ++ Y S+ K+ S ++ I ++ + + E Sbjct: 328 ILEAMISGELDILKDWCYEATYNQLAHSIQQAKALGLQFHSRILDISNVDLAMGKMMEQG 387 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 + + Q + + + DP+ +++ +W R+ NP W L Sbjct: 388 PVLIVTFQAQLVMVIKNPKGEVFDGDPDKVLRMLYVWALCRDQEELNPYAAWRL 441 >gi|8394449|ref|NP_058963.1| mitochondrial import inner membrane translocase subunit TIM44 precursor [Rattus norvegicus] gi|6016370|sp|O35094|TIM44_RAT RecName: Full=Mitochondrial import inner membrane translocase subunit TIM44; Flags: Precursor gi|2335041|dbj|BAA21820.1| Tim44 [Rattus norvegicus] Length = 453 Score = 79.2 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 66/174 (37%), Gaps = 3/174 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + ++ D + + T +++V+ +I+ V FD FL++ + Sbjct: 268 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDRFLHQCETDIIPN 327 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G++ ++ Y S+ K+ S ++ I ++ + + E Sbjct: 328 ILEAMISGELDILKDWCYEATYNQLAHSIQQAKALGLQFHSRILDISNVDLAMGKMMEQG 387 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 + + Q + + + DP+ +++ +W R+ NP W L Sbjct: 388 PVLIVTFQAQLVMVIKNPKGEVFDGDPDKVLRMLYVWALCRDQEELNPYAAWRL 441 >gi|255081604|ref|XP_002508024.1| mitochondrial protein translocase family [Micromonas sp. RCC299] gi|226523300|gb|ACO69282.1| mitochondrial protein translocase family [Micromonas sp. RCC299] Length = 341 Score = 79.2 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 9/141 (6%) Query: 96 TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEK-NVKS 154 F +F EA Y I E V ++ LV + D TR+ + Sbjct: 176 KGFTRDNFKAEAGQLYRQISQLIAENHVTSLRHLVTEKALTDIKREAKTREKAGWGKIVW 235 Query: 155 SLVGIDDMKIINASI--------EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 + ++ + + + +T+ A+YD L++ DP F V Sbjct: 236 EIRDLEKPVTLQGRMIFPNPQDKQMAFAQMTVGFRSHQRYAAYDAKGRLVAGDPNGFLPV 295 Query: 207 IDIWTFVRNIPPSNPNWVLIS 227 D+W N W L + Sbjct: 296 EDVWVLEHAFKLPNARWRLAA 316 >gi|303284301|ref|XP_003061441.1| mitochondrial protein translocase family [Micromonas pusilla CCMP1545] gi|226456771|gb|EEH54071.1| mitochondrial protein translocase family [Micromonas pusilla CCMP1545] Length = 289 Score = 79.2 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 80/209 (38%), Gaps = 13/209 (6%) Query: 27 LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK 86 L V K G ++ + + + R+ T DS++ F T + Sbjct: 71 LTSVFSKLQGLKRTPAYQKTEDALEDLRERW--ETSENPMVHKIQDSVDGFFQE-TEQGE 127 Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL-VDSRVYQDFNDSLSTR 145 R I + F+ DFL E R I+ ++ +G V A+ V + + + + + Sbjct: 128 AYRAIRARAPTFNINDFLAEVRRDVPKILGAYLKGDVDALAMTNVSNEMMERMSGQMRAW 187 Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 ++ +K V ++ + D++++ + E + + Q I+ D +++ + Sbjct: 188 EAEQKFVDPRVLHLGDVELVETRMMEGAPLVVTQFQCQQINCVRDASGVIVEGAEDDIQA 247 Query: 206 VIDIWTFV---RNIPPSN------PNWVL 225 V +W + + ++ P WVL Sbjct: 248 VHYLWAMQLVDKELVAADGRKYVAPTWVL 276 >gi|281349988|gb|EFB25572.1| hypothetical protein PANDA_010903 [Ailuropoda melanoleuca] Length = 405 Score = 79.2 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 62/149 (41%), Gaps = 7/149 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138 T +++V+ +I+ V FD + FL + N + I +++ G++ ++ Y Sbjct: 247 TEMSEVLTEILRVDPAFDKERFLQQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 304 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 + ++ S ++ ID++ + + E + I Q + + ++ Sbjct: 305 AHPIQQARALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEG 364 Query: 199 DPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 DP+ +++ +W R+ NP W L Sbjct: 365 DPDKVLRMLYVWALCRDQDELNPYAAWRL 393 >gi|332264171|ref|XP_003281120.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44 [Nomascus leucogenys] Length = 455 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 65/180 (36%), Gaps = 9/180 (5%) Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 + I + D + E T +++V+ +I+ V FD FL + N + Sbjct: 266 DESDNAFIRASRALTDKVTDLLGEGSVSKTEMSEVLTEILRVDPAFDKDRFLKQCEN--D 323 Query: 113 AI-----VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167 I V + G + + + Y + K+ S ++ ID++ + Sbjct: 324 IIPNVLEVGAAPPGPLPGSRSWLHQQTYSQLAHPIQQAKALGLQFHSRILDIDNVDLAMG 383 Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 + E + I Q + + ++ DP+ +++ +W R+ NP W L Sbjct: 384 KMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRL 443 >gi|126323825|ref|XP_001376780.1| PREDICTED: similar to Translocase of inner mitochondrial membrane 44 homolog (yeast) [Monodelphis domestica] Length = 443 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 68/178 (38%), Gaps = 8/178 (4%) Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 + +I + + D + LF T +++V+ +I+ V FD FL + + Sbjct: 257 DESDNTLIRVSRAVTDKITDLVGGLFSK-TEMSEVLTEILKVDPTFDKDRFLQQCER--D 313 Query: 113 AI---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 I +++ G++ ++ Y + KS S ++ I ++ + + Sbjct: 314 IIPNVLEAMITGELDILKDWCYEATYSQLAHPIHQAKSMGLQFHSRILDISNVDLAMGKM 373 Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 E + I Q + + ++ DP+ +++ +W R+ NP W L Sbjct: 374 MEQGPVLIITFQAQLVMVIKNPKGDVVEGDPDKVLRMLYVWALCRDQTELNPYAAWRL 431 >gi|145352217|ref|XP_001420450.1| MPT family transporter: inner membrane translocase (import) Tim44 [Ostreococcus lucimarinus CCE9901] gi|144580684|gb|ABO98743.1| MPT family transporter: inner membrane translocase (import) Tim44 [Ostreococcus lucimarinus CCE9901] Length = 286 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 75/211 (35%), Gaps = 13/211 (6%) Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFP---IGTRL 84 + LG + +K + Y + + + I + T Sbjct: 63 KSKLGIASAFDKLEGLKKTAPYAKGAELAEDMRERWETSDSPVVHRIQDFQDNLFSETEQ 122 Query: 85 NKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL-VDSRVYQDFNDSLS 143 + R I F+ DF+ E R ++ ++ +G V A+++ + S + + + ++ Sbjct: 123 GEAYRMIRQRDPMFNINDFIAEVRRDIPKVLGAYLKGDVEALKQTNISSEMLERLSGQMN 182 Query: 144 TRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203 K ++V ++ + +++++ + EN + + Q I+ DK ++ + Sbjct: 183 LWKHEGQHVDPRILDLSEVELMEVRLMENEPLVVLTFSCQQINCVRDKSGAVVEGAEDDI 242 Query: 204 GKVIDIWTFV---RNIPPSN------PNWVL 225 V +W + + P W L Sbjct: 243 QSVHYLWAMQLVDKEYTTKDGRKYTKPTWAL 273 >gi|291411565|ref|XP_002722049.1| PREDICTED: translocase of inner mitochondrial membrane 44 [Oryctolagus cuniculus] Length = 452 Score = 78.8 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 60/147 (40%), Gaps = 3/147 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T +++V+ +I+ V FD FL + + I+++ G++ ++ Y Sbjct: 294 TEMSEVLTEILRVDPAFDKDRFLQQCENDIIPNILEAMISGELDILKDWCYEATYSQLAH 353 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K+ S ++ +D++ + + E + I Q + + ++ DP Sbjct: 354 PIQQAKALGFQFHSRILDVDNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEGDP 413 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVL 225 + +++ +W R+ NP W L Sbjct: 414 DKVLRMLYVWALCRDQDELNPYAAWRL 440 >gi|297827085|ref|XP_002881425.1| attim44-2 [Arabidopsis lyrata subsp. lyrata] gi|297327264|gb|EFH57684.1| attim44-2 [Arabidopsis lyrata subsp. lyrata] Length = 469 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 58/175 (33%), Gaps = 3/175 (1%) Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFP---IGTRLNKVMRDIVSVY 95 K SG S+ ++ + + I ++ T ++I Sbjct: 262 KRLSGMSEPVVNKSQEIAEDVMEKWETSDNPIVHKIQDMNEKIFEETGSASTYKEIRRRD 321 Query: 96 TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155 F DF E + + +++++ +G ++K + + +S+ Sbjct: 322 PSFSLPDFAVEIQEAIRPVLNAYSKGDAETLKKYCSKELIERCTAEHRAFQSHGYFFDHK 381 Query: 156 LVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210 L+ + +++I + + I +R Q I D++ + + V W Sbjct: 382 LLHVSEVEIKETKMMGTSPVIIVRFQTQEIFCVRDQNGNIKEGGQDTIHTVYYDW 436 >gi|168047419|ref|XP_001776168.1| predicted protein [Physcomitrella patens subsp. patens] gi|162672543|gb|EDQ59079.1| predicted protein [Physcomitrella patens subsp. patens] Length = 354 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 46/129 (35%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 T MR+I F DFL E + + ++ +G + K V + Sbjct: 193 TATAVAMREIRRHDPSFTFSDFLAEVQEEIRPTLRAYLKGDFATLRKKCSREVVERCQAE 252 Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201 +S + + ++ I D++I + N I I Q I + +KD +I + Sbjct: 253 RRALESQGIFLDNEILHISDVEIKETKLLGNAPIIIINFQTQQIHCARNKDGNIIEGARD 312 Query: 202 IFGKVIDIW 210 V W Sbjct: 313 DIHTVFYAW 321 >gi|256083399|ref|XP_002577932.1| mitochondrial import inner membrane translocase subunit tim44 [Schistosoma mansoni] gi|238663274|emb|CAZ34170.1| mitochondrial import inner membrane translocase subunit tim44, putative [Schistosoma mansoni] Length = 407 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 7/147 (4%) Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDFN 139 L +V+ +I+ + F+ + F+ R + I +++ G + + Y Sbjct: 250 DLQQVLDEIIKMDPSFNLESFIRYCR--FVVIPNVLEAIVRGDLRILHDWCHEVPYNVLA 307 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199 L K +S ++ + ++ + + E + I Q I+ DK+ L D Sbjct: 308 TPLKQMKELGYISESRILDVHNVDVQMGKMMEQGPVLIITFQAQQINCIRDKNGNLHEGD 367 Query: 200 PEIFGKVIDIWTFVRNIPPSNP--NWV 224 P +V ++W R+ NP W Sbjct: 368 PNKVLRVTNVWALCRDQSEMNPLAAWR 394 >gi|148224361|ref|NP_001087692.1| translocase of inner mitochondrial membrane 44 [Xenopus laevis] gi|51703695|gb|AAH81090.1| MGC82677 protein [Xenopus laevis] Length = 451 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 4/176 (2%) Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLN-EARNSY 111 + + + D I LF T +++V+ +I+ V +FD FL R+ Sbjct: 265 DESDNAFVRASRTITDKVSDLIGGLFSK-TEMSEVLTEILKVDPNFDKDKFLKLCERDII 323 Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171 I+++ G + ++ Y + KS S ++ ID++ + + E Sbjct: 324 PNILEAMIRGDLDVLKDWCYEATYSQLAHPIQQAKSMGLQFNSRILDIDNIDLAMGKMME 383 Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 + I Q + A ++ ++ D + +++ +W R+ NP W L Sbjct: 384 QGPVLIITFQAQLVMAITNQRGDIVEGDQDKVLRMLYVWALCRDQDELNPYAAWRL 439 >gi|301093253|ref|XP_002997475.1| Mitochondrial Protein Translocase (MPT) Family [Phytophthora infestans T30-4] gi|262110731|gb|EEY68783.1| Mitochondrial Protein Translocase (MPT) Family [Phytophthora infestans T30-4] Length = 467 Score = 78.0 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 60/140 (42%), Gaps = 10/140 (7%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV-----DSFFEGKVHAIEKLVDSRVYQ 136 T + +++I DF L E + + E +V ++F G ++K Y Sbjct: 308 TPMAVAIKEIRRAEPDF----ILEEWKENIEEVVLPGVLEAFLRGNSRDLKKWFGEAAYS 363 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI-RIVGQFISASYDKDNLL 195 N ++ RKS + ++ ID++++I A+ E+ I + R Q I+ +++ + Sbjct: 364 RMNIAIRERKSEGLVMDPHVLSIDNVEVIEATAEDKQAPIILMRFQAQQINCIRNREGEV 423 Query: 196 ISSDPEIFGKVIDIWTFVRN 215 + + I+ F R+ Sbjct: 424 VEGSEDEVLAYYYIFAFQRD 443 >gi|308807262|ref|XP_003080942.1| Putative mitochondrial/chloroplast ribosomal protein L45 (ISS) [Ostreococcus tauri] gi|116059403|emb|CAL55110.1| Putative mitochondrial/chloroplast ribosomal protein L45 (ISS) [Ostreococcus tauri] Length = 285 Score = 78.0 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 63/213 (29%), Gaps = 20/213 (9%) Query: 32 GKKTGN--EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMR 89 G ++G + S + Y R + L + + + + Sbjct: 56 GARSGIRLNRTSSNVIAEPYAGPLRRPTIVQAL---TTSLGWRYVVDSALGKAKDAYALS 112 Query: 90 DIVSVYTDFDPKDFLNEARNSYEAIV--DSFFEGKV---HAIEKLVDSRVYQDFNDSLST 144 F F EA+ Y I + G H ++ D Sbjct: 113 KCTKEIKGFTLDGFKAEAKQLYRMINATSASTSGTRALSHETRHATTDKMQSDLKRERKA 172 Query: 145 RKSNEK-NVKSSLVGIDDMKIINASIE---------ENTVYITIRIVGQFISASYDKDNL 194 R+ + SL I++ +++ + V +T R + A+YD Sbjct: 173 RELGGWGAIDWSLEDIEECQVVRGRLIMANPNDTSGAGFVQLTTRFRSRQRFAAYDGKGR 232 Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 L+S DP+ V D W F + N W L Sbjct: 233 LVSGDPDEVLDVEDFWVFEHGLKIPNSRWRLAG 265 >gi|168020464|ref|XP_001762763.1| predicted protein [Physcomitrella patens subsp. patens] gi|162686171|gb|EDQ72562.1| predicted protein [Physcomitrella patens subsp. patens] Length = 428 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 49/129 (37%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 T MR+I F DFL E + + ++ +G V ++K V + Sbjct: 267 TATAVAMREIRRHDPSFTFSDFLAEMQEEIRPTLRAYLKGDVPTLKKKCCREVLERCQAE 326 Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201 S +S + + ++ I D++I + N+ I I Q I + DK +I + Sbjct: 327 RSALESQGIFLSNEILHISDIEIKETKLLGNSPIIIINFQTQQIHCARDKAGNIIEGARD 386 Query: 202 IFGKVIDIW 210 V W Sbjct: 387 DIHTVFYAW 395 >gi|187608373|ref|NP_001120395.1| translocase of inner mitochondrial membrane 44 [Xenopus (Silurana) tropicalis] gi|170284954|gb|AAI61105.1| LOC100145471 protein [Xenopus (Silurana) tropicalis] Length = 441 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 67/176 (38%), Gaps = 4/176 (2%) Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLN-EARNSY 111 + + + D I LF T +++V+ +I+ V +FD FL R+ Sbjct: 255 DESDNAFVRASRTITDKVSDLIGGLFSK-TEMSEVLTEILKVDPNFDKDKFLKLCERDII 313 Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171 I+++ G + ++ Y + K+ S ++ ID++ + + E Sbjct: 314 PNILEAMIRGDLDVLKDWCYEATYSQLAHPIQQAKAMGLQFNSKILDIDNIDLAMGKMME 373 Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 + I Q + ++ ++ D + +++ +W R+ NP W L Sbjct: 374 QGPVLIITFQAQLVMVITNQKGDVVEGDRDKVLRMLYVWALCRDQDELNPYAAWRL 429 >gi|168056436|ref|XP_001780226.1| predicted protein [Physcomitrella patens subsp. patens] gi|162668376|gb|EDQ54985.1| predicted protein [Physcomitrella patens subsp. patens] Length = 418 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 9/102 (8%) Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI---------DDMK 163 I ++ G A+ +LV V L R+ V LVG + Sbjct: 229 MINNALAAGDRTALRQLVTDNVLTAMKKELKHRELAWARVHWELVGPLKSIRTLQGRLIG 288 Query: 164 IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 I +++ +T+RIV A+YDK L++ DPE + Sbjct: 289 IDQKNMDTAFAQLTLRIVSTQRFAAYDKQGKLVAGDPEKEVE 330 >gi|78484559|ref|YP_390484.1| import inner membrane translocase, subunit Tim44 [Thiomicrospira crunogena XCL-2] gi|78362845|gb|ABB40810.1| Hypothetical protein; predicted membrane protein [Thiomicrospira crunogena XCL-2] Length = 306 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 66/222 (29%), Gaps = 16/222 (7%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 +L I FL L L K+ + + R T + Sbjct: 100 IQLLDILLIALVAFL-LFSFLKKRQATMMQPAYSRESSPSSFEAASRQTTTQMRENHAPT 158 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 D IG+ L++ + FD F+ A+ + I ++ + Sbjct: 159 YDPYASGSLIGSGLSEQAESMTQKPDWFDEAGFMEAAKGHFVEIQKAWDALDSQELADYC 218 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 + + T ++ E + + + + +I+ + +++R Sbjct: 219 TPELMAALQSEMDTFQAGENLTEVEELN---AETVEMAIDGDYFIVSVRF---------- 265 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + + ++ +IW +R + NW + + + Sbjct: 266 -NGFIREDRNDVAHAFNEIWH-IRRLAAGEGNWQIAGIQQNQ 305 >gi|224123246|ref|XP_002319031.1| predicted protein [Populus trichocarpa] gi|222857407|gb|EEE94954.1| predicted protein [Populus trichocarpa] Length = 233 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 18/161 (11%) Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 L + T + F EA Y+ I G A+ K V ++Y + + + Sbjct: 71 ELKNAYAIVKLRKTGYSKHKFYVEAIKLYKEINTLLANGDKTALRKAVTEKMYSELKNEI 130 Query: 143 STRKSNE----------------KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 R+S + +++ L ++ + + + + + +T+ I + Sbjct: 131 KQRQSAWNMSKLYWEMIEPAVLIRTLRARLA--TEIGVDKSDLNKVFIQLTLEIKTKQKF 188 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 +YD ++ D V +IW F +++ W L Sbjct: 189 EAYDSKGARVAGDKNKEILVREIWVFEKSLFHPGAYWRLCG 229 >gi|19483882|gb|AAH23454.1| Timm44 protein [Mus musculus] Length = 450 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 65/174 (37%), Gaps = 3/174 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + ++ D + + T +++V+ +I+ V FD FL++ + Sbjct: 265 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQCETDIIPN 324 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G++ ++ Y + K+ S ++ I ++ + + E Sbjct: 325 ILEAMISGELDILKDWCYEATYSQLAHPIQQAKALGFQFHSRILDISNVDLAMGKMMEQG 384 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 + + Q + + + DP+ +++ +W R+ NP W L Sbjct: 385 PVLIVTFQAQVVMVIKNSKGEVYDGDPDKVQRMLYVWALCRDQEELNPYAAWRL 438 >gi|170763467|ref|NP_035722.2| mitochondrial import inner membrane translocase subunit TIM44 precursor [Mus musculus] gi|84570125|gb|AAI10678.1| Timm44 protein [Mus musculus] gi|109730975|gb|AAI17524.1| Translocase of inner mitochondrial membrane 44 [Mus musculus] gi|109731467|gb|AAI17525.1| Translocase of inner mitochondrial membrane 44 [Mus musculus] gi|148690045|gb|EDL21992.1| translocase of inner mitochondrial membrane 44, isoform CRA_a [Mus musculus] Length = 452 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 65/174 (37%), Gaps = 3/174 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + ++ D + + T +++V+ +I+ V FD FL++ + Sbjct: 267 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQCETDIIPN 326 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G++ ++ Y + K+ S ++ I ++ + + E Sbjct: 327 ILEAMISGELDILKDWCYEATYSQLAHPIQQAKALGFQFHSRILDISNVDLAMGKMMEQG 386 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 + + Q + + + DP+ +++ +W R+ NP W L Sbjct: 387 PVLIVTFQAQVVMVIKNSKGEVYDGDPDKVQRMLYVWALCRDQEELNPYAAWRL 440 >gi|6016369|sp|O35857|TIM44_MOUSE RecName: Full=Mitochondrial import inner membrane translocase subunit TIM44; Flags: Precursor gi|2351410|gb|AAB97624.1| translocase of inner mitochondrial membrane [Mus musculus] Length = 452 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 65/174 (37%), Gaps = 3/174 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + ++ D + + T +++V+ +I+ V FD FL++ + Sbjct: 267 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQCETDIIPN 326 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G++ ++ Y + K+ S ++ I ++ + + E Sbjct: 327 ILEAMISGELDILKDWCYEATYSQLAHPIQQAKALGFQFHSRILDISNVDLAMGKMMEQG 386 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 + + Q + + + DP+ +++ +W R+ NP W L Sbjct: 387 PVLIVTFQAQVVMVIKNSKGEVYDGDPDKVQRMLYVWALCRDQEELNPYAAWRL 440 >gi|225848621|ref|YP_002728784.1| hypothetical protein SULAZ_0804 [Sulfurihydrogenibium azorense Az-Fu1] gi|225643113|gb|ACN98163.1| conserved hypothetical protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 293 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 6/130 (4%) Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163 LN A+N++ I ++ EG + ++ + R+Y N L KS V I + + Sbjct: 167 LNLAKNAFIDIQKAWSEGNLSSVRNFLTDRMYLYLNSQLQDLKSKGLRNIIEDVKILNAE 226 Query: 164 IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV-RNIPPSNPN 222 I++ E + + + I Q + D + ++ D + + W FV + + N Sbjct: 227 IVHVEEEGDNKVVIVEIEAQAKDYTVDSNGNVVEGDKDNPVVFKEYWAFVGKAL-----N 281 Query: 223 WVLISTKLGE 232 W L + + Sbjct: 282 WKLDDIRQVQ 291 >gi|297836804|ref|XP_002886284.1| mitochondrial import inner membrane translocase subunit TIM44 [Arabidopsis lyrata subsp. lyrata] gi|297332124|gb|EFH62543.1| mitochondrial import inner membrane translocase subunit TIM44 [Arabidopsis lyrata subsp. lyrata] Length = 477 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 60/170 (35%) Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100 S K D R I + +NE+F T ++I + F Sbjct: 275 MSEPVVNKSQEIAEDVREIWETSDNPIVHKIQDMNEMFLKETDSASTYKEIRNRDPSFSL 334 Query: 101 KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160 DF E +++++ EG V ++K V + L+ +++ + L+ I Sbjct: 335 PDFAAEIEEVIRPVLNAYSEGDVETLKKYCSKEVIERCTAELTAYQTHGFFFDNKLLHIS 394 Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210 D+++ + ++ I + Q I D++ + + V W Sbjct: 395 DVRVSVTKMMGDSPIIIAKFQTQEIYCVRDENGEIQEGGQDTIHTVYHEW 444 >gi|325191254|emb|CCA26040.1| Mitochondrial Protein Translocase (MPT) Family puta [Albugo laibachii Nc14] Length = 409 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 64/156 (41%), Gaps = 18/156 (11%) Query: 82 TRLNKVMRDIVSVYTDF-------DPKDF-LNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 T + +R+I +F D +F L ++D+F +G+ ++K Sbjct: 250 TSMGIAIREIRRAEPEFILEQWKEDIAEFVLPG-------VLDAFLKGRSRDLKKWFGEA 302 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV-YITIRIVGQFISASYDKD 192 Y N ++ RKS + +++ ID++ +I AS E+ I +R Q I+ +++ Sbjct: 303 AYNRINIAIRERKSEGLVMDPNVLEIDNVDVIEASAEDKQAPIILVRFRSQQINCIRNRE 362 Query: 193 NLLISSDPEIFGKVIDIWTFVR--NIPPSNPNWVLI 226 ++ + I+ F R + W ++ Sbjct: 363 GEIVEGAEDEVLAYYYIFAFQREYDESTERLRWRIV 398 >gi|242279221|ref|YP_002991350.1| import inner membrane translocase subunit Tim44 [Desulfovibrio salexigens DSM 2638] gi|242122115|gb|ACS79811.1| import inner membrane translocase subunit Tim44 [Desulfovibrio salexigens DSM 2638] Length = 312 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 76/230 (33%), Gaps = 23/230 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGK----KTGNEKPFSGFFSGKYVFSKRDERGIITL 62 + +L++ F F + R G + GN + + + D Sbjct: 101 NLLIIGLLVYLG---FKFFKSRS-RGTDDMYRQGNYQRGPDYSQPNQNNTNADPYARREQ 156 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 D+L S P + V++ FD ++FL+ A+ Y + S+ Sbjct: 157 TAQNAWDHLSSKPSSQPAAGSAAQQSGPTVNIPAGFDEEEFLDGAKAVYTRLQKSWDSRD 216 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + IE+ + V + + + + + V + + +++ E ++T+ Sbjct: 217 MADIEQFATAGV----VNEIKQQAKEDPGPSQTDVLMVNARLLEVKEEGGVNHVTVYYDV 272 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 S +V ++W FV+ + + W L + E Sbjct: 273 LLRE----------DSSQSQPSQVREVWHFVKPVGS-DGMWKLDGIQQLE 311 >gi|225438141|ref|XP_002278528.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 485 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 44/129 (34%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 T ++I F DF++E + +++++ +G ++K V + Sbjct: 324 TAAAMSFKEIRRRDPSFSLPDFVSEVQEVIRPVLNAYIKGDAETLKKYCSPEVIERCKAE 383 Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201 ++ + ++ I D+++ + + I + Q + D + + Sbjct: 384 HGAYQTMGIIFDNKILHISDVEVRETKMMGTSPIIIVAFQTQQVYCVRSADGSIKEGGKD 443 Query: 202 IFGKVIDIW 210 V W Sbjct: 444 TIHTVYYAW 452 >gi|87311137|ref|ZP_01093261.1| hypothetical protein DSM3645_18996 [Blastopirellula marina DSM 3645] gi|87286228|gb|EAQ78138.1| hypothetical protein DSM3645_18996 [Blastopirellula marina DSM 3645] Length = 707 Score = 76.1 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 6/140 (4%) Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 ++ + + FD F A N++ I ++ + + +I V VY+ F+ +S Sbjct: 114 IDSCLEALKESDPSFDLPQFKQRAENAFGKIQRAWSDQDLASIHAFVSDGVYERFSLQIS 173 Query: 144 TRKSNEKNVKSSLVGIDDMKIIN--ASIEENTVY--ITIRIVGQFISASYDK-DNLLISS 198 + V I M+ I AS + + I++R+ + D+ LI Sbjct: 174 EQHELGYRNVIEDVRILKMEPIEIIASRNDQNAFEVISLRVQARGKDYRVDRTTGKLIPG 233 Query: 199 DPEIFGKVIDIWTFVRNIPP 218 ++WTF+R Sbjct: 234 SKSN-ESFSEVWTFLRRRGA 252 >gi|297744147|emb|CBI37117.3| unnamed protein product [Vitis vinifera] Length = 484 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 44/129 (34%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 T ++I F DF++E + +++++ +G ++K V + Sbjct: 323 TAAAMSFKEIRRRDPSFSLPDFVSEVQEVIRPVLNAYIKGDAETLKKYCSPEVIERCKAE 382 Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201 ++ + ++ I D+++ + + I + Q + D + + Sbjct: 383 HGAYQTMGIIFDNKILHISDVEVRETKMMGTSPIIIVAFQTQQVYCVRSADGSIKEGGKD 442 Query: 202 IFGKVIDIW 210 V W Sbjct: 443 TIHTVYYAW 451 >gi|148690048|gb|EDL21995.1| translocase of inner mitochondrial membrane 44, isoform CRA_d [Mus musculus] Length = 321 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 65/174 (37%), Gaps = 3/174 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + ++ D + + T +++V+ +I+ V FD FL++ + Sbjct: 136 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQCETDIIPN 195 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G++ ++ Y + K+ S ++ I ++ + + E Sbjct: 196 ILEAMISGELDILKDWCYEATYSQLAHPIQQAKALGFQFHSRILDISNVDLAMGKMMEQG 255 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 + + Q + + + DP+ +++ +W R+ NP W L Sbjct: 256 PVLIVTFQAQVVMVIKNSKGEVYDGDPDKVQRMLYVWALCRDQEELNPYAAWRL 309 >gi|73540138|ref|YP_294658.1| import inner membrane translocase, subunit Tim44 [Ralstonia eutropha JMP134] gi|72117551|gb|AAZ59814.1| Mitochondrial import inner membrane translocase, subunit Tim44 [Ralstonia eutropha JMP134] Length = 327 Score = 75.7 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 71/224 (31%), Gaps = 16/224 (7%) Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSK-RDERGIITLGKGK 66 S ++L A + F +R G N++P + + + Sbjct: 117 SFLSNLILIALVAFVAIWLIRKFRGGSQRNQQPAYAGAGNAGGMGDLGNSAEPMLREQTP 176 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + + + V DFD + FL A+ + + ++ G + I Sbjct: 177 SPAASNPVMPAAGAAAVAADAAQQPWGVPADFDTEAFLRNAKVHFVRLQAAWDAGNLDDI 236 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + ++ + L+ R + + K+ +V + + +++ N ++R G Sbjct: 237 REFTTPEMFAEIKMDLAERGA--EVNKTDVVTL-EAQLLGIESAPNQHLASVRFSG---- 289 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ E ++W + + W+L + Sbjct: 290 MIRERTG-------EAAQPFAEVWNLAKPV-SGTGGWLLAGIQQ 325 >gi|302790822|ref|XP_002977178.1| hypothetical protein SELMODRAFT_176052 [Selaginella moellendorffii] gi|300155154|gb|EFJ21787.1| hypothetical protein SELMODRAFT_176052 [Selaginella moellendorffii] Length = 432 Score = 75.3 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 6/150 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 T ++I S F DF+ E + I+ ++ +G + K V V + Sbjct: 271 TATAAAFKEIRSRDPTFSFPDFVLEVQEDIRPILTAYLKGDYDTLRKKVCKEVVERCRAE 330 Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201 +S V + ++ I ++++ + + N I I Q D+ + + Sbjct: 331 HRALQSQGLYVDTKILYISELEVRESKLIGNEPVIIISFQTQQNYCVRDEFGHIREGSKD 390 Query: 202 IFGKVIDIWTF------VRNIPPSNPNWVL 225 ++ W + P W L Sbjct: 391 DIRTILYAWAMQQVSLDEMDPDEFTPRWRL 420 >gi|296532615|ref|ZP_06895317.1| import inner membrane translocase, subunit Tim44 [Roseomonas cervicalis ATCC 49957] gi|296267060|gb|EFH12983.1| import inner membrane translocase, subunit Tim44 [Roseomonas cervicalis ATCC 49957] Length = 243 Score = 75.3 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 45/129 (34%), Gaps = 11/129 (8%) Query: 109 NSYEA----IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164 ++EA I ++ + +L + F L + ++S V ++ + Sbjct: 119 QAFEALLRDINAAWSRRDEAGLARLATPEMASYFAQDLRDLDARGWRNETSDVRLEQGDL 178 Query: 165 INA--SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222 A + + + +R + +YD ++ DP ++WTF R Sbjct: 179 SEAWREADGDYATVAMRFS--LVDVTYDTQGRVVEGDPATRSTATELWTFRRRRGGP--- 233 Query: 223 WVLISTKLG 231 W L + + Sbjct: 234 WQLSAIQQA 242 >gi|316968065|gb|EFV52405.1| conserved hypothetical protein [Trichinella spiralis] Length = 468 Score = 74.9 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 62/165 (37%), Gaps = 4/165 (2%) Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 GK + D++ + F +++V+ +I + +FD DF + + + I ++ G+ Sbjct: 295 GGKLSEFFDNLLDAFLDNCSVSEVLTEICKIDPNFDVTDFRKQCQRDF--IPNASNRGEE 352 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 + + LS K L ID+++II I + + + + Sbjct: 353 EILRDWCSEGAFNQLIALLSECKRAGYKHTFRLFDIDNVEIITGKITDMGPVLLVAFQTR 412 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN--PNWVLI 226 + D + + + +W F R++ N W ++ Sbjct: 413 QLRCIQTPDGKFVFGTTDDPLLITHLWAFCRDVDEPNSKAAWRVV 457 >gi|153829224|ref|ZP_01981891.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|148875262|gb|EDL73397.1| conserved hypothetical protein [Vibrio cholerae 623-39] Length = 95 Score = 74.1 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 47/109 (43%), Gaps = 15/109 (13%) Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 ++ I + V +++D L ++N + + + V D +I+ A + N ++++ Sbjct: 1 NQLETIREYVSPSLFED----LKAERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQF 56 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G++ A I + + D+W R++ N W+++ + Sbjct: 57 SGRYRDAV-----EGIEEN------IEDVWHLERDLTVPNAPWLIVGIQ 94 >gi|298715200|emb|CBJ27872.1| Import inner membrane translocase subunit TIM44, mitochondrial precursor [Ectocarpus siliculosus] Length = 602 Score = 74.1 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 18/156 (11%), Positives = 53/156 (33%), Gaps = 5/156 (3%) Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRV 134 + + +R++ + F +D+ + + + + +F G V +++ Sbjct: 436 DSLTAESDEGIGVRELRRLDPSFSVEDWKRDIQELFLPEFMSAFLRGDVKLLKQWTGEAC 495 Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQFISASYDKD 192 Y RK++ + ++ I +++ + I ++ + Q I+ +K Sbjct: 496 YNKLASEAKQRKADGMVLDPHVLDIRQGEVLAIKADAGKANPTIALQFMCQQINCVRNKK 555 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLI 226 ++ + I F R W ++ Sbjct: 556 GEILEGAEDDIRATYYILAFQREFNDDEAELRWRVV 591 >gi|186475144|ref|YP_001856614.1| import inner membrane translocase subunit Tim44 [Burkholderia phymatum STM815] gi|184191603|gb|ACC69568.1| import inner membrane translocase subunit Tim44 [Burkholderia phymatum STM815] Length = 331 Score = 73.8 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 78/230 (33%), Gaps = 27/230 (11%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I L AF+ ++ R +G+K + P S G Sbjct: 125 FAGMMANMIVIALIAFVAIWLI---RKFVGRKRNAQTPAYAGGSPTL------NAGGTGY 175 Query: 63 GKGKKKDNLDSINELFPIGTRLNKV-MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 + + + + L P G L + +V FD + FL A+ + + ++ G Sbjct: 176 SQEPRYTAPPTGSYLGPQGNPLTTPDIAATPAVPAGFDSEAFLRNAKVYFVRLQAAWDAG 235 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 + I + ++ + LS+R + + ++ +V + D ++ + ++R Sbjct: 236 NMDDIREFTTPEMFAEVRVDLSSRGA--EKNQTDVVKL-DADLLGVEDRGSEYLASVRFH 292 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 G + E +IW + W+L + Sbjct: 293 GLIR--------ETVGGSAE---PFEEIWNLSKRTGEG---WLLAGIQQA 328 >gi|260361390|ref|ZP_05774455.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|308111106|gb|EFO48646.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] Length = 229 Score = 73.8 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 12/122 (9%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 IL+ I F +F +RG+LG K G N++ F G ++ Sbjct: 96 ILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNASKFEQPNMQNFEQQPNTNAGG 155 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + FD F+N +R Y + ++ ++ IE+ V Sbjct: 156 FTGFGAQTDVPHNYP----------PGFDQAAFINGSREHYRILQGAWNHNQLDTIEEYV 205 Query: 131 DS 132 Sbjct: 206 SP 207 >gi|303278680|ref|XP_003058633.1| mitochondrial protein translocase family [Micromonas pusilla CCMP1545] gi|226459793|gb|EEH57088.1| mitochondrial protein translocase family [Micromonas pusilla CCMP1545] Length = 335 Score = 73.8 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 13/145 (8%) Query: 96 TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNE-KNVKS 154 F + FL+ A+ Y + + G + L R V+ Sbjct: 159 QAFTKEGFLDTAKEVYAEVNELIARGDHAKLRHLCSGSAASHVKREDKARSQGGWDRVEW 218 Query: 155 SLV-GIDDMKIINASI-----EENT--VYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 L+ + +++ A + + T++ + A+YDK L++ DPE V Sbjct: 219 KLLEHVQTPRVLQARLCSPAGDPAVSWAQFTVQFKTRETFAAYDKRGNLVAGDPEEVLVV 278 Query: 207 IDIWTFVRNIPPS----NPNWVLIS 227 D W + S N W L + Sbjct: 279 EDAWVLEHGVGESNSKKNARWRLAA 303 >gi|91806216|gb|ABE65836.1| mitochondrial import inner membrane translocase subunit TIM44 [Arabidopsis thaliana] Length = 474 Score = 73.8 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 65/188 (34%), Gaps = 11/188 (5%) Query: 23 VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82 VF +L +G +P K D R I + +NE F T Sbjct: 265 VFKRL-------SGMSEPVVN----KSQEIAEDVREIWETSDNPIVHKIQDMNEKFLKET 313 Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 ++I S F DF E + +++++ EG V ++K V + Sbjct: 314 DSASTYKEIRSRDPSFSLPDFAAEIEEVIKPVLNAYSEGDVETLKKYCSKEVIERCTAER 373 Query: 143 STRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI 202 + +++ + L+ I ++ + + ++ I + Q I D++ + + Sbjct: 374 TAYQTHGVLFDNKLLHISEVSVSVTKMMGDSPIIIAKFQTQEIYCVRDENGEIQEGGQDT 433 Query: 203 FGKVIDIW 210 V W Sbjct: 434 IHTVYHEW 441 >gi|18399377|ref|NP_565473.1| ATTIM44-1; protein-transmembrane transporting ATPase [Arabidopsis thaliana] gi|20198086|gb|AAD25651.2| putative mitochondrial inner membrane translocating protein [Arabidopsis thaliana] gi|330251926|gb|AEC07020.1| translocase inner membrane subunit 44-1 [Arabidopsis thaliana] Length = 472 Score = 73.8 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 65/188 (34%), Gaps = 11/188 (5%) Query: 23 VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82 VF +L +G +P K D R I + +NE F T Sbjct: 263 VFKRL-------SGMSEPVVN----KSQEIAEDVREIWETSDNPIVHKIQDMNEKFLKET 311 Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 ++I S F DF E + +++++ EG V ++K V + Sbjct: 312 DSASTYKEIRSRDPSFSLPDFAAEIEEVIKPVLNAYSEGDVETLKKYCSKEVIERCTAER 371 Query: 143 STRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI 202 + +++ + L+ I ++ + + ++ I + Q I D++ + + Sbjct: 372 TAYQTHGVLFDNKLLHISEVSVSVTKMMGDSPIIIAKFQTQEIYCVRDENGEIQEGGQDT 431 Query: 203 FGKVIDIW 210 V W Sbjct: 432 IHTVYHEW 439 >gi|316958066|gb|EFV47264.1| conserved hypothetical protein [Trichinella spiralis] Length = 168 Score = 73.8 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 55/147 (37%), Gaps = 3/147 (2%) Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 +++V+ +I + +FD DF + + + ++++ G+ + + Sbjct: 11 SVSEVLTEICKIDPNFDVTDFRKQCQRDFIPNVIEASNRGEEEILRDWCSEGAFNQLIAL 70 Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201 LS K L ID+++II I + + + + + D + + Sbjct: 71 LSECKRAGYKHTFRLFDIDNVEIITGKITDMGPVLLVAFQTRQLRCIQTPDGKFVFGTTD 130 Query: 202 IFGKVIDIWTFVRNIPPSN--PNWVLI 226 + +W F R++ N W ++ Sbjct: 131 DPLLITHLWAFCRDVDEPNSKAAWRVV 157 >gi|307822898|ref|ZP_07653128.1| import inner membrane translocase subunit Tim44 [Methylobacter tundripaludum SV96] gi|307735673|gb|EFO06520.1| import inner membrane translocase subunit Tim44 [Methylobacter tundripaludum SV96] Length = 319 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 68/228 (29%), Gaps = 28/228 (12%) Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73 L+F I F+ + KK G + + + D+ Sbjct: 110 LIFGGIA-FLLYKWFAA--KKAGAAQRPVYNRTADNSYQDTASSDHEPEPTQANPAGFDT 166 Query: 74 INELFPIGTRLNKVMRDIVSVY---------TDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 + LF V DFD + FL+ A+ ++ + ++ E + Sbjct: 167 -DILFKKDNNATPSYAQPVQQDAGFASAVVPKDFDQQAFLSGAKIAFTELQKAWDERDLA 225 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 I L +V+ + D L + + L + +++ + + + Sbjct: 226 EIRGLTTDKVFAEIQDQLKASDAANRTEILRL----EAELLEVREVGSELEAVVLFDTIM 281 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + + +V ++W F++ P W L + E Sbjct: 282 RE----------DGNAQA-AQVREVWHFIKPKVSIQPKWYLDGIQQLE 318 >gi|167525988|ref|XP_001747328.1| hypothetical protein [Monosiga brevicollis MX1] gi|163774163|gb|EDQ87795.1| predicted protein [Monosiga brevicollis MX1] Length = 437 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 61/173 (35%), Gaps = 3/173 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDF-LNEARNSYEA 113 + ++ G D L V+ ++ + FD F L+ + A Sbjct: 252 ESDNVLVRGARSVTDTLTDRLGQVFENDESGAVLAEVQRLDPTFDRLAFTLHCEKKVIPA 311 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 ++++F G +++ + + + R+++ ++ ++ I D++ I A + Sbjct: 312 VLEAFIAGDKEVLKEWCAEVCFNNMAAQIDQREASGIIYEARILDIADVEYITAQRMDEG 371 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWV 224 + Q D+ ++ + + + ++ RN +P W Sbjct: 372 PVLVFVFNAQQTHCIRDRTGAVVEGSEDNIQQSMYMFAMRRNPAIFDPKLAWQ 424 >gi|254230446|ref|ZP_04923825.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|151937047|gb|EDN55926.1| conserved hypothetical protein [Vibrio sp. Ex25] Length = 209 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 8/122 (6%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ I F +F +RG+LG K G+ + SK ++ + + +N Sbjct: 96 ILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNFEQQPNTNNGG 155 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 N FD F+N +R Y + ++ ++ IE+ V Sbjct: 156 FGGFGAQTDVPHNYP--------PGFDQAAFINGSREHYRILQGAWNHNQLKTIEEYVSP 207 Query: 133 RV 134 + Sbjct: 208 SL 209 >gi|74318798|ref|YP_316538.1| hypothetical protein Tbd_2780 [Thiobacillus denitrificans ATCC 25259] gi|74058293|gb|AAZ98733.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC 25259] Length = 273 Score = 73.4 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 63/189 (33%), Gaps = 25/189 (13%) Query: 43 GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKD 102 FF + + + G + + T FD Sbjct: 110 RFFMRRNAPQPAMQYAGVPPGHNPRLHDATPAGATAGPATGFP----------PGFDAAG 159 Query: 103 FLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDM 162 F EA+ ++ + +F G + + ++ + + ++ R +++ V + D Sbjct: 160 FAREAKLNFIRLQAAFDAGNLDDLRAFTSPEIFAELSMQMAER---GDVQQTTDVMMLDA 216 Query: 163 KIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222 +++ AS E+N +++R GQ + + + ++W + I Sbjct: 217 EVLEASDEDNRHVVSVRFTGQ----VRENEGA-------APVALDEVWHLTKPIHGGG-G 264 Query: 223 WVLISTKLG 231 WV+ + G Sbjct: 265 WVIAGIQQG 273 >gi|237756615|ref|ZP_04585131.1| import inner membrane translocase, subunit Tim44 [Sulfurihydrogenibium yellowstonense SS-5] gi|237691229|gb|EEP60321.1| import inner membrane translocase, subunit Tim44 [Sulfurihydrogenibium yellowstonense SS-5] Length = 296 Score = 73.0 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 46/113 (40%), Gaps = 6/113 (5%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I ++ G + ++ + R+YQ + L K+ I++++I++ E + Sbjct: 180 IQKAWSNGDLSPVKNFLTDRMYQYLEEQLKELKAKGLRNIVENPKIENLEIVHVEEEGDN 239 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV-RNIPPSNPNWVL 225 + +R+ I + D D ++ D + W FV + + NW L Sbjct: 240 KVVIVRLDASAIDYTVDSDGNIVEGDKYNPVSFTEYWAFVGKAL-----NWKL 287 >gi|47216426|emb|CAG01977.1| unnamed protein product [Tetraodon nigroviridis] Length = 405 Score = 73.0 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 64/180 (35%), Gaps = 9/180 (5%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEA 113 + + D + T +++V+ +IV FD FL + ++ Sbjct: 214 ESDNALIRASRAVTDRVTDFLGGLFSKTEMSEVLTEIVKADPTFDKDSFLKQCEKDIIPN 273 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G++ ++ Y + K+ +S ++ ID++ + + E Sbjct: 274 ILEAMIRGELDVLKDWCYEATYSQLAHPIQQAKALGLRFQSKVLDIDNIDLAMGKMMEQG 333 Query: 174 VYITIRIVGQFISASYDKDNLLISSDP------EIFGKVIDIWTFVRNIPPSNPN--WVL 225 + I Q I ++ DP +++ +W R+ NP+ W L Sbjct: 334 PVLIITFQAQVIMVIRSPKGDIVEGDPVSTVTSGKVMRMMYVWALCRDQEELNPSAAWRL 393 >gi|89092751|ref|ZP_01165704.1| hypothetical protein MED92_15633 [Oceanospirillum sp. MED92] gi|89083263|gb|EAR62482.1| hypothetical protein MED92_15633 [Oceanospirillum sp. MED92] Length = 294 Score = 73.0 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 24/222 (10%), Positives = 71/222 (31%), Gaps = 26/222 (11%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 + I +FL + + ++ ++P + + I + ++++ Sbjct: 96 IQFMDLLLIAGVIFLIFKIMSMRRQ-AQQPTYANNGPQ-------QYEIKPHAEQQQREA 147 Query: 71 LDSINELFPIGTRLNKVMRDIVSVY-TD-FDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 + F N + F+ + FL A++ + + ++ I Sbjct: 148 APEQDSNFKPMPSFNSGWGNSEEFELPSWFNRESFLEGAKSHFVTLQKAWDASNWDEIRT 207 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 ++Q R + + +V + ++ N +++ V ++I G Sbjct: 208 YTSDELFQALQQ---ERAKYPADQTTEVVSVM-AEVANFIDQKSEVIVSINFYGWL---- 259 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + E + + W R++ N +W ++ + Sbjct: 260 --------KENSEETTEFNETWHLSRDMSVENADWFIVGIEQ 293 >gi|298292408|ref|YP_003694347.1| import inner membrane translocase subunit Tim44 [Starkeya novella DSM 506] gi|296928919|gb|ADH89728.1| import inner membrane translocase subunit Tim44 [Starkeya novella DSM 506] Length = 331 Score = 72.6 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 80/232 (34%), Gaps = 14/232 (6%) Query: 3 FIKMDSGDFLILLFAFIT-FFVFLQLRGVLG-KKTGNEKPFSGFFSGKYVFSKRDERGII 60 F + S ++ L I + ++L V+G ++ N+ ++G + + G Sbjct: 111 FSGLGSLAGILGLLLQIALVVIVVRL--VMGWMRSRNQPSYAGGARPDPMQREALNGGAP 168 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 G + G R I +DFD F E I ++ Sbjct: 169 MGGAPMGGAPMGGAGAAPRAGFGTGPRGRPIQLQGSDFDT--F----ERRLEEIQTAYGR 222 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + +L + + L + + + V + + A E+ + Y T+ + Sbjct: 223 ADRDTLLRLATPEMGGYLREELDQLERDGLENRLGDVKLLQGDLSEAWAEDGSEYATVAM 282 Query: 181 VGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + +K ++ DP +V++ WTFVR W+L + + G Sbjct: 283 RYELTDVIVEKATGRIVQGDPSRKEQVVEFWTFVR---SPGGEWLLSAIQQG 331 >gi|260830091|ref|XP_002609995.1| hypothetical protein BRAFLDRAFT_247571 [Branchiostoma floridae] gi|229295357|gb|EEN66005.1| hypothetical protein BRAFLDRAFT_247571 [Branchiostoma floridae] Length = 257 Score = 72.6 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 68/181 (37%), Gaps = 12/181 (6%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + ++ D + + T +++V+ +I+ V F + FL + + Sbjct: 67 ESDNVVVRASRLITDKVGDLVGGLFSKTEMSEVLTEIIKVDPSFTKEAFLKQCETDIIPN 126 Query: 114 IVDSFFEGKVHAIEKLV-------DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN 166 I+++ G + ++ D +++ S K+ + S ++ ID++ + Sbjct: 127 ILEAMIRGDLEILKDWCFEAVSNHDQKLHASSCQ--SQGKALGCHFDSKILDIDNLDLAT 184 Query: 167 ASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWV 224 + E + I Q I + + DP KVI +W R+ +P +W Sbjct: 185 GKVMEQGPVLVISFTAQQIMVVRNAKGEVTEGDPNKVLKVIYVWALCRDQEEFDPRASWK 244 Query: 225 L 225 L Sbjct: 245 L 245 >gi|82702119|ref|YP_411685.1| import inner membrane translocase, subunit Tim44 [Nitrosospira multiformis ATCC 25196] gi|82410184|gb|ABB74293.1| import inner membrane translocase, subunit Tim44 [Nitrosospira multiformis ATCC 25196] Length = 295 Score = 72.2 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 77/222 (34%), Gaps = 22/222 (9%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 +L+ A + +F +R + + + + + + T G Sbjct: 94 NMMDVLMLAALIGGIFFVMRMLRKPRQEHSARPMQYSGMQGTSTDHGVTPGATAATGSAP 153 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 + + + P+ N I + DF + FL A+ S+ + + ++ I + Sbjct: 154 ETTPRASAVAPVSGTGN-----IPA---DFQVEPFLRNAKTSFIRLQAANDARDLNDIRE 205 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 +Y + + ++ R + ++ ++ I+ +++ E++ ++R GQ Sbjct: 206 YTTPEMYAEISMQINER--GNEPQRTDVLAIN-AQLLEVVTEKDMAIASVRFNGQLR--- 259 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S +IW +++ + W+L + Sbjct: 260 --------ESPQSTPEAFDEIWHVQKDLKDPDAVWLLAGIQQ 293 >gi|20197991|gb|AAM15344.1| hypothetical protein [Arabidopsis thaliana] Length = 499 Score = 71.8 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 43/120 (35%) Query: 91 IVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEK 150 + + F DF++E + + +++++ +G ++K + + S Sbjct: 347 VHKIQESFSLPDFVSEIQEAIRPVLNAYSKGDAKTLKKYCSKELIERCTAEHRAFTSQGY 406 Query: 151 NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210 L+ + ++ I + T I +R Q I D+D + + V W Sbjct: 407 FFDHKLLHVSEVDIQETKMMGTTPVIIVRFQTQEIFCVRDQDGKIKEGGQDTIHTVYYDW 466 >gi|188591179|ref|YP_001795779.1| hypothetical protein RALTA_A0388 [Cupriavidus taiwanensis LMG 19424] gi|170938073|emb|CAP63057.1| conserved hypothetical protein, COG4395 [Cupriavidus taiwanensis LMG 19424] Length = 327 Score = 71.8 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 74/229 (32%), Gaps = 29/229 (12%) Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 S LI L AF ++ + RG K + + R + +G+ Sbjct: 120 SNLILIALVAFAAIWLIRKFRGS--------KRAAQPAYAGAGGAPNLGRNAEPMFRGEP 171 Query: 68 KDNLDSINELFPI------GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 P+ V + V DFD + FL A+ + + ++ G Sbjct: 172 TPVSSGSQSASPVLPASAAPVAAGAVAQQPWGVPADFDTESFLRNAKVHFVRLQAAWDAG 231 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 + I + ++ + L+ R + + K+ +V + + +++ ++R Sbjct: 232 NLDDIREFTTPEMFAEIKMDLAERGA--EVNKTDVVTL-EAQLLGIESSPAQHLASVRFS 288 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G +K E ++W + + N W+L + Sbjct: 289 G----MIREKAG-------EAAQPFGEVWNLAKPV-SGNGGWLLAGIQQ 325 >gi|13475963|ref|NP_107533.1| hypothetical protein mll7160 [Mesorhizobium loti MAFF303099] gi|14026723|dbj|BAB53319.1| mll7160 [Mesorhizobium loti MAFF303099] Length = 328 Score = 71.8 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 59/205 (28%), Gaps = 21/205 (10%) Query: 33 KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIV 92 + + P + R E + + + G L +I Sbjct: 139 RTQSAQGPAPALAGAGNAQASRFENRAAAQQQTASSFTIPGFGDGSG-GASLAADSEEIR 197 Query: 93 SVYTDFDPKDFLNEARNSYEA----IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148 TD D +++ I ++F A+ + + ++ L+ Sbjct: 198 LAQTDLD----------AFQQLLTDIQEAFGREDHAALRRATTPEMVSYLSEELADNAQK 247 Query: 149 EKNVKSSLVGIDDMKIINA--SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 + S + + I + + + +R + + ++ D + + Sbjct: 248 GLRNEVSDITLLQADIAESWRENDRDYATAALRYESRDVMRERGS-GKVVEGDEDHPTET 306 Query: 207 IDIWTFVRNIPPSNPNWVLISTKLG 231 ++WTF R NW L + + Sbjct: 307 TELWTFTRQNGS---NWKLSAIQQA 328 >gi|302763825|ref|XP_002965334.1| hypothetical protein SELMODRAFT_83588 [Selaginella moellendorffii] gi|300167567|gb|EFJ34172.1| hypothetical protein SELMODRAFT_83588 [Selaginella moellendorffii] Length = 413 Score = 71.8 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 44/128 (34%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 T ++I S F DF+ E + I+ ++ +G + K V V + Sbjct: 249 TATAAAFKEIRSRDPTFSFPDFVLEVQEDIRPILTAYLKGDYDTLRKKVCKEVVERCRAE 308 Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201 +S V + ++ I ++++ + + N I I Q D+ + Sbjct: 309 HRALQSQGLYVDTKILYISELEVRESKLIGNEPVIIISFQTQQNYCVRDEFGHIREGSKA 368 Query: 202 IFGKVIDI 209 + I Sbjct: 369 SIDDIRTI 376 >gi|145590075|ref|YP_001156672.1| import inner membrane translocase, subunit Tim44 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048481|gb|ABP35108.1| import inner membrane translocase, subunit Tim44 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 303 Score = 71.8 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 72/222 (32%), Gaps = 26/222 (11%) Query: 8 SGDFLILLFAFITFFVFLQL-RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 S LL A I FV + L R +L SG V R + + Sbjct: 103 SSLITGLLIAMIAGFVIMFLIRKIL-------PALSGAGQNTNVPPAAVPRSNLDQTPRQ 155 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + N + K I + FD + FL A+ + + ++ G + A+ Sbjct: 156 DPGFAPAANAYSGVSAADEKFESTIPA---GFDERTFLENAKQYFVNLQKAWDLGDLAAL 212 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + ++ L+ R + ++ ++ I D K++ E + +++ G Sbjct: 213 GEFTTPEMFATIQQDLAGRSDSAN--QTDVLSI-DAKLLGIETSEAHYFCSVQFKG---- 265 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 ++ S +IW + + WVL Sbjct: 266 MIREQPGAPAS-------DFSEIWNLSKPVNGPG-GWVLAGI 299 >gi|56753483|gb|AAW24945.1| SJCHGC05805 protein [Schistosoma japonicum] Length = 417 Score = 71.4 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 7/163 (4%) Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVH 124 D + S+ F I L +V+ ++ + F+ + F+ R + I +++ + Sbjct: 245 TDKVSSLFGGFKINNELQEVLDEVTKMDPSFNLESFIRYCR--FVVIPNVLEAIVRVDLP 302 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 ++ + L K +S ++ I ++ + I E + I Q Sbjct: 303 ILQDWCHEAPFNVLATPLRQIKELGYVSESRILDIHNVDVQMGKIMEQGPVLIITFQAQQ 362 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 I DK+ + DP +V +W R+ +P W L Sbjct: 363 IHCIRDKNGTVHEGDPNKVLRVTHVWALCRDQSEMHPLAAWRL 405 >gi|78355820|ref|YP_387269.1| hypothetical protein Dde_0773 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218225|gb|ABB37574.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 301 Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 77/222 (34%), Gaps = 26/222 (11%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 ILLF + +FL LR + ++ G + + + + + D Sbjct: 103 ILLFGGV---IFLILRMM--RRRGAPR-GEPAYQAGGAYQGGASHDVRQHDNTMYRQAQD 156 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + L G+ V FD ++FL AR+ Y + +S+ + I Sbjct: 157 GWSGLRSAGSGSPSSAAPAPEVPAGFDTEEFLQGARSVYTRLQNSWDNRDLDDIRTFTSP 216 Query: 133 RVYQDFNDSLSTRKSNEKNV--KSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 V+ + R++ + ++ L+ I+ +++ E + + T+ D Sbjct: 217 SVFDEI-----HRQAQDDPQPSRTELLLIN-ARVLEVKEETDGMLATVYFDVLMR---ED 267 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +PE V ++W F R + W L + E Sbjct: 268 ASG----GNPEQ---VREVWHFHR--ATPDAMWRLDGIQQLE 300 >gi|114328920|ref|YP_746077.1| transporter [Granulibacter bethesdensis CGDNIH1] gi|114317094|gb|ABI63154.1| transporter [Granulibacter bethesdensis CGDNIH1] Length = 326 Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 3/120 (2%) Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171 + + ++ + + + + + FN+ L+ S + + V + + A E Sbjct: 209 KEVQAAWTDRNLQQLGSISTPEMVGYFNEQLTALASRGLHNTVTNVTLQKGDLSEAWREG 268 Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 Y T+ ++ I A+YD ++ D + WTFVR W+L + + Sbjct: 269 TLEYATVAMLFSMIDATYDSSGRVVEGDASQLQTATEFWTFVR---SPGGPWILSAIQQA 325 >gi|312797306|ref|YP_004030228.1| hypothetical protein RBRH_02101 [Burkholderia rhizoxinica HKI 454] gi|312169081|emb|CBW76084.1| Hypothetical protein RBRH_02101 [Burkholderia rhizoxinica HKI 454] Length = 367 Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 63/199 (31%), Gaps = 28/199 (14%) Query: 36 GNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVY 95 G E P + + T G G+ D + + + L D+ +V Sbjct: 191 GFESPSGASLRQYDASAAAPSQLPATGGMGQAGVAPDGQSRVAADPSVL-----DVPAVP 245 Query: 96 TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN---- 151 FD F+ +A+ ++ + ++ G + I + ++ + +R + Sbjct: 246 AGFDADAFIRQAKVAFVRLQAAWDAGNLDDIREFTTPEMFAEIKLDFDSRHGENRTDVVQ 305 Query: 152 VKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWT 211 + + LVG++D N ++R G + ++W Sbjct: 306 LNADLVGVEDRG-------GNEYVASVRFHG----LLRETQGAAAE-------PFAEMWN 347 Query: 212 FVRNIPPSNPNWVLISTKL 230 RN WVL + Sbjct: 348 LSRNARSGE-GWVLAGIQQ 365 >gi|226480686|emb|CAX73440.1| Import inner membrane translocase subunit TIM44, mitochondrial precursor [Schistosoma japonicum] Length = 417 Score = 70.7 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 7/148 (4%) Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDFN 139 L +V+ ++ + F+ + F+ R + I +++ + ++ + Sbjct: 260 ELQEVLDEVTKMDPSFNLESFIRYCR--FVVIPNVLEAIVRVDLPILQDWCHEAPFNVLA 317 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199 L K +S ++ I ++ + I E + I Q I DK+ + D Sbjct: 318 TPLRQIKELGYVSESRILDIHNVDVQMGKIMEQGPVLIITFQAQQIHCIRDKNGTVHEGD 377 Query: 200 PEIFGKVIDIWTFVRNIPPSNP--NWVL 225 P +V +W R+ +P W L Sbjct: 378 PNKVLRVTHVWALCRDQSEMHPLAAWRL 405 >gi|222149642|ref|YP_002550599.1| hypothetical protein Avi_3590 [Agrobacterium vitis S4] gi|221736624|gb|ACM37587.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 270 Score = 70.7 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 4/118 (3%) Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ E A+ ++ + L + + V + + A E Sbjct: 156 QKAYAEEDYSALRRITTPEAMSYLAEELGEHATKGVKNEVRDVHLLQGDLAEAWREGTVD 215 Query: 175 YITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 Y T+ + + I D+ ++ DP+ + +++WTFVR W + + + Sbjct: 216 YATVAMRYEAIDVMRDRATGAVVDGDPDHPQQSVEVWTFVRRPGSG---WSISAIQSA 270 >gi|167585475|ref|ZP_02377863.1| import inner membrane translocase, subunit Tim44 [Burkholderia ubonensis Bu] Length = 334 Score = 70.7 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 70/228 (30%), Gaps = 21/228 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M S +I L A I ++ + ++ NE P + Sbjct: 124 FASMMSNLIVIALLAAIGIWLIRKFMN---RRRSNE-PAYSVGGSASASGNYSQGPSFQA 179 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 G G N + V FD + FL A+ + + ++ +G Sbjct: 180 GNGSSYANEAQSVFGGGTAAAAAGAAAAPLQVPAGFDTEAFLRSAKVYFVRLQAAWDQGN 239 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + I + ++ + L +R + ++ +V + D +++ ++R G Sbjct: 240 LADIREFTTPEMFAEIKIDLDSR--GNEANQTDVVQL-DAELVAIEDRGIEQSASVRFHG 296 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + N + ++W ++ W+L + Sbjct: 297 ----LIREAANAPAA-------PFDEVWNLAKSGGQG---WLLAGIQQ 330 >gi|149927075|ref|ZP_01915333.1| hypothetical protein LMED105_09477 [Limnobacter sp. MED105] gi|149824296|gb|EDM83516.1| hypothetical protein LMED105_09477 [Limnobacter sp. MED105] Length = 340 Score = 70.3 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 63/231 (27%), Gaps = 40/231 (17%) Query: 16 FAFITFFVF---LQLRGVLGKKTGNEKPFSGFFSGK-------YVFSKRDERGIITLGKG 65 I VF +R + G++ +P S + Sbjct: 131 MLMIAAAVFAVMFLVRMLRGQQAAKPRPAYSAPGATGSGQNSYRQASTNPINDPVPGMGA 190 Query: 66 KKKD-------NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + D N + + P T + + FD +F+N A+ + + F Sbjct: 191 PRNDQGFGQFGNASAFDAPMPAATP-------VKDLPAGFDEANFVNSAKKFFVTMQGVF 243 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 +G V + + V + R V + V D ++I + + T+ Sbjct: 244 DKGDVDGLREYCSDDVVDHLRAEIEAR---GNAVNRTDVVTLDAQLIGFETDVDEQIATV 300 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G ++ ++W R + WVL Sbjct: 301 AFTGMLR-----------EEQDAAAEEINELWIMSRPVSGGG--WVLSGIH 338 >gi|78706782|ref|NP_001027194.1| CG11779, isoform C [Drosophila melanogaster] gi|16183135|gb|AAL13638.1| GH18370p [Drosophila melanogaster] gi|71854565|gb|AAZ52531.1| CG11779, isoform C [Drosophila melanogaster] Length = 430 Score = 70.3 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 58/152 (38%), Gaps = 1/152 (0%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + + D + + T L++ M ++V + FD KDFL + + Sbjct: 274 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 333 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I++S G + ++ + + + K + S ++ I+++++ + E Sbjct: 334 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGVYLDSKILDIENIELAMGKVMEQG 393 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 + I Q I D+ + ++ DPE Sbjct: 394 PVLIITFQAQQIMCVRDQKSQVVEGDPEKPKP 425 >gi|217978356|ref|YP_002362503.1| import inner membrane translocase subunit Tim44 [Methylocella silvestris BL2] gi|217503732|gb|ACK51141.1| import inner membrane translocase subunit Tim44 [Methylocella silvestris BL2] Length = 329 Score = 70.3 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 9/130 (6%) Query: 109 NSYEA----IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164 +++E + ++ + ++A+ L + F + L K S V + Sbjct: 202 SAFEQRLFAVQKAYSDEDMNALRALSTPEMASYFAEELGENARKGVVNKLSKVEFLQGDL 261 Query: 165 INA--SIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNP 221 A + + +R I + D+ L++ DP + +IWTF R Sbjct: 262 AEAWSEANGDYASVAMRFS--MIDQTLDRATGRLVAGDPSAPQQATEIWTFTRRSGGGAQ 319 Query: 222 NWVLISTKLG 231 +W L + Sbjct: 320 DWKLSGIQQA 329 >gi|219115361|ref|XP_002178476.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217410211|gb|EEC50141.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 510 Score = 70.3 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 23/189 (12%), Positives = 75/189 (39%), Gaps = 7/189 (3%) Query: 45 FSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFL 104 + + D + + + S+ + + + ++++ + +F +D+ Sbjct: 311 AKARVDHIREDAKEAWETSQNPWVYRVSSVYDTLTAESPETRAVKELRQLDPEFTLEDWK 370 Query: 105 -NEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163 + ++ I+ F EG+++ ++ + V++ ++ R+ + ++L+GI + + Sbjct: 371 ADVVEHTLPQIMQWFLEGRINQLKPWLGEGVFKRLAAEMTAREKEGVQIDTNLLGIMNSE 430 Query: 164 IINA---SIEENTVYITIRIVGQFISAS-YDKDNLLISSDPEIFGKVIDIWTFVR--NIP 217 I+ + + I + + Q I+ KD+ ++ + + F R + Sbjct: 431 ILAIEPDEVNRGSPIIILHFMAQQINCVKKKKDDEIVEGAEDDIRANSYVTAFQREYDEE 490 Query: 218 PSNPNWVLI 226 NW ++ Sbjct: 491 KGELNWKIV 499 >gi|90418181|ref|ZP_01226093.1| conserved hypothetical protein with Tim44-like domain [Aurantimonas manganoxydans SI85-9A1] gi|90337853|gb|EAS51504.1| conserved hypothetical protein with Tim44-like domain [Aurantimonas manganoxydans SI85-9A1] Length = 203 Score = 70.3 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 24/214 (11%) Query: 24 FLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83 F + R S + ++R T G + SI +G Sbjct: 6 FFRSRN-----------PSPARANGGGHTERRAYEEPTQPAGNGSFRIPSIGSGAGLGGG 54 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEA----IVDSFFEGKVHAIEKLVDSRVYQDFN 139 + D + +++E + +F A+ + + Sbjct: 55 SAATGAATAAAEPS-DEIGITDADLDTFEQKLHEVQAAFSREDYAALRTITTPEIMSYLA 113 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISASYDKD-NLLI 196 + LS ++ + V ++ I A E +T + +R I D+ ++ Sbjct: 114 EELSENATSGRKNDVLDVKLEQGDIAEAWREGDTEYASLAMRYSS--IDVMRDRTTGEVV 171 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 DP+ + ++WTFVR+ W L + + Sbjct: 172 EGDPDTPTETTELWTFVRDKGGE---WKLSAIQE 202 >gi|332702904|ref|ZP_08422992.1| import inner membrane translocase subunit Tim44 [Desulfovibrio africanus str. Walvis Bay] gi|332553053|gb|EGJ50097.1| import inner membrane translocase subunit Tim44 [Desulfovibrio africanus str. Walvis Bay] Length = 343 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 63/217 (29%), Gaps = 25/217 (11%) Query: 16 FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 A + F F++ R V S S + R + + S + Sbjct: 151 LAGLMLFRFIRSRKV-----------SQASSAAMAGNDRYAYAAAQADRSSPAASAGSWD 199 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 L + + ++ D +FL+ A+ Y + S+ + I V Sbjct: 200 SLRSASAQASSAPEAGPAMPEGLDEAEFLSGAKALYARLQASWNRRDLKDIRAFTSPEVL 259 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + + + + + V + + +++ + IT+ Sbjct: 260 ----AEIERQAAEDPTPDKTDVLMLNARVLEVRRDGQQTVITVLYDALLRE--------- 306 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +V ++W R+ P W+L + E Sbjct: 307 -DQSASQPTQVREVWHIRRDESAPRPEWILEGIQQLE 342 >gi|224000153|ref|XP_002289749.1| tim44-like protein [Thalassiosira pseudonana CCMP1335] gi|220974957|gb|EED93286.1| tim44-like protein [Thalassiosira pseudonana CCMP1335] Length = 252 Score = 69.9 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 24/186 (12%), Positives = 64/186 (34%), Gaps = 12/186 (6%) Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSY 111 K D + S+ + + R + + DF +++ + ++ Sbjct: 56 KEDAAEAWETSQNPWVYRASSVYDTLTAESEFAAASRQLQKLDPDFTLENWKRDVVEHTL 115 Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171 I+ F EG++ ++ + VY + RK + ++++ I + +I+ + Sbjct: 116 PQIMKLFLEGRIQELKPWLGEAVYNRLAAEVRARKKEGVQMDTNILAIMNAEILACELAG 175 Query: 172 NTVYIT--------IRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPS--N 220 ++V + + + Q I K + ++ + + F R Sbjct: 176 SSVNVDKGDDPILLLHFMCQQIHCVRKKKIDDIVEGSEDDIRANSYVVAFQREYNEEKME 235 Query: 221 PNWVLI 226 NW ++ Sbjct: 236 LNWKIV 241 >gi|159483173|ref|XP_001699635.1| hypothetical protein CHLREDRAFT_141592 [Chlamydomonas reinhardtii] gi|158281577|gb|EDP07331.1| predicted protein [Chlamydomonas reinhardtii] Length = 311 Score = 69.9 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 22/151 (14%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 F ++Y+A+ + G + E V + ++ R + +V + Sbjct: 160 GFSKSALQQRVLDAYKAVNAALAAGDMALAEPYVTEQTGLRLAGEVARRGRS--SVTWRM 217 Query: 157 VG---IDDMKIINASIEEN--------TVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 V D+K+++ +I N T RI + + A YD L++ DP+ + Sbjct: 218 VREPKPSDIKLVHGTIVSNPLKQGKLHFAQWTARIPSRQVVAVYDNRGKLLAGDPDKELE 277 Query: 206 VIDIWTFVRNI---------PPSNPNWVLIS 227 V+D W F R I PS W L+ Sbjct: 278 VVDHWVFERPILKAWIAPRPGPSGAEWRLVE 308 >gi|194212576|ref|XP_001497048.2| PREDICTED: similar to Import inner membrane translocase subunit TIM44, mitochondrial [Equus caballus] Length = 488 Score = 69.9 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 5/130 (3%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138 T +++V+ +I+ V FD FL + N + I +++ G++ ++ Y Sbjct: 297 TEMSEVLTEILRVDPAFDKDRFLQQCEN--DIIPNVLEAMISGELDILKDWCYEATYSQL 354 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 + K+ S ++ ID++ + + E + I Q + + ++ Sbjct: 355 AHPIQQAKALGLQFHSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMVVKNPKGEVVEG 414 Query: 199 DPEIFGKVID 208 DP + G +D Sbjct: 415 DPALLGPRVD 424 >gi|170691438|ref|ZP_02882603.1| import inner membrane translocase subunit Tim44 [Burkholderia graminis C4D1M] gi|170143643|gb|EDT11806.1| import inner membrane translocase subunit Tim44 [Burkholderia graminis C4D1M] Length = 332 Score = 69.5 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 76/219 (34%), Gaps = 19/219 (8%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 I++ A + +R LG+K +P ++G G + + Sbjct: 128 IIVIALLAMIGIWLIRRFLGRKRDTSQP---AYAGHSPSLNSGATGYTQEPQEPRYTAPP 184 Query: 73 SINELFPIGTRLNK-VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 + + L P G L + SV FD + FL A+ + + ++ G + I + Sbjct: 185 TGSYLEPQGNPLTTPSVNATPSVPAGFDSEAFLRNAKVYFVRLQAAWDVGNIDDIREFTT 244 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 ++ + LS+R + ++ +V ++ ++ N + ++R Sbjct: 245 PEMFAEVRVDLSSRGAG--TNQTDVVQLN-ADLLGVEERANEYFASVRFS---------- 291 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 L+ + +++W + W+L + Sbjct: 292 -GLIREAPGAAAEPFVEVWNLSK-ANRPGEGWLLAGIQQ 328 >gi|212702059|ref|ZP_03310187.1| hypothetical protein DESPIG_00061 [Desulfovibrio piger ATCC 29098] gi|212674574|gb|EEB35057.1| hypothetical protein DESPIG_00061 [Desulfovibrio piger ATCC 29098] Length = 300 Score = 69.5 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 63/219 (28%), Gaps = 30/219 (13%) Query: 14 LLFAFITFFVFLQL--RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71 +L I FV L+L R + G + + Sbjct: 108 ILLLGILLFVGLKLFARS------------RSKAQPAPAGAGNAPMGGMEPPLQRNDTAA 155 Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 + L N ++ + DFD ++FL A+ +Y + ++ ++ I + Sbjct: 156 AGWDTLSSQDNTYNSQPEVVIPMPADFDAEEFLRGAKMAYNRLQAAWDNRDLNDIAQFAS 215 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 V L+ K + + + ++++ E+ + Sbjct: 216 PAVMDAVRQQLAEETEPSKTE----ILLVNAQLLSVVNEDKEQRAQVYFDVLMRERP--- 268 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D V +IW FVR + W L + Sbjct: 269 -------DQPTPSNVREIWHFVRELDGG--TWKLDGIQQ 298 >gi|94986557|ref|YP_594490.1| hypothetical protein LI0112 [Lawsonia intracellularis PHE/MN1-00] gi|94730806|emb|CAJ54168.1| uncharacterized protein conserved in bacteria [Lawsonia intracellularis PHE/MN1-00] Length = 313 Score = 69.5 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 81/226 (35%), Gaps = 31/226 (13%) Query: 13 ILLFAFITFFVFLQL---RGVLGKKTGNEKPFSG--FFSGKYVFSKRDERGIITLGKGKK 67 ++L A + ++ +L R K T NE + + + + + S+ TL Sbjct: 111 LILIAGL-VYLAYRLFFKR----KITSNEASVTNSLYATQQPLTSEMPIPRSTTLSGTGW 165 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + + + I + DF+ ++FL A+ +Y + ++ + I Sbjct: 166 ESLKSQHTTYSADVSN-----QAITTNIPIDFNEEEFLKGAKAAYVRLNAAWDNRDLEDI 220 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 ++ + ++ N +++ + + + +++ E+ +++ + Sbjct: 221 QQFTTPGFLNELQQQITE----NPNPETTEIMLVNASVVDVKKIEDEELVSVYF-----N 271 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ++ E +V +IW FVR +W L + E Sbjct: 272 VLLKENQ-----SQESPIEVREIWHFVRP-ASGEGSWKLDGIQQVE 311 >gi|94309317|ref|YP_582527.1| import inner membrane translocase, subunit Tim44 [Cupriavidus metallidurans CH34] gi|93353169|gb|ABF07258.1| import inner membrane translocase, subunit Tim44 [Cupriavidus metallidurans CH34] Length = 329 Score = 69.1 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 68/221 (30%), Gaps = 18/221 (8%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 ++LF I +R G ++P G TL + N Sbjct: 122 VILFGVIALIAMWLIRKFRGGSARTQQPSYAGMGGNGSNYGGPSHAEPTLRTAEPVGNGG 181 Query: 73 SINELFPIGTRLNKVMRDIVSVY---TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + + G + + DFD + FL A+ Y + ++ G I + Sbjct: 182 AASNPVMGGAAAAATAAAVQQPWGVPADFDTESFLRNAKVHYVRLQAAWDAGNQDDIREF 241 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 ++ + LS R S + K+ +V + D +++ ++R G Sbjct: 242 TTPEMFAEIKMDLSERGS--EVNKTDVVTL-DAQLLGIESTPAQHIASVRFSG----MIR 294 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +K ++W + N W+L + Sbjct: 295 EKAGEP-------AQPFGEVWNLAK-ATSGNGGWLLAGIQQ 327 >gi|209521830|ref|ZP_03270508.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. H160] gi|209497734|gb|EDZ97911.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. H160] Length = 333 Score = 69.1 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 72/221 (32%), Gaps = 22/221 (9%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 +++ A I V +R + TG ++ + S Sbjct: 132 VIVIALIAIVVIWLIR----RFTGRKRDATQPDYAGTAPSLNANSTGYMQEPRYTAPPTG 187 Query: 73 SINELFPIGTRLNK-VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 + L P G L + SV FD + FL A+ + + ++ G V I + Sbjct: 188 A--YLEPQGNPLTTPSIGAPPSVPAGFDSEAFLRNAKVYFVRLQAAWDAGNVEDIREFTT 245 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 ++ + L++R + ++ +V ++ +++ N + ++R Sbjct: 246 PEMFAEVRVDLASRGTQPN--QTDVVQLN-AELLGVEERANESFASVRFS---------- 292 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 L+ +++W R W+L + E Sbjct: 293 -GLIREEPGAAAEPFVEVWNLSRANRAGE-GWLLAGIQQVE 331 >gi|113866475|ref|YP_724964.1| hypothetical protein H16_A0446 [Ralstonia eutropha H16] gi|113525251|emb|CAJ91596.1| hypothetical membrane spanning protein [Ralstonia eutropha H16] Length = 329 Score = 69.1 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 79/237 (33%), Gaps = 40/237 (16%) Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 S LI L AF ++ + RG G+++ ++G R + +G+ Sbjct: 117 SNLILIALVAFAAIWLIRKFRG------GSKRTQQPAYAGAGNAP-NLGRSAEPMFRGEP 169 Query: 68 KDNLDSINELFPIGTRLNKVM--------------RDIVSVYTDFDPKDFLNEARNSYEA 113 ++ P G N V+ + V DFD + FL A+ + Sbjct: 170 TP----VSSGSPAGPAANTVLPAASAAPVAADAVAQQPWGVPADFDTEAFLRNAKVHFVR 225 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ G + I + ++ + L+ R + + K+ +V + + +++ Sbjct: 226 LQAAWDAGNLDDIREFTTPEMFAEIKMDLADRGA--EVNKTDVVTL-EAQLLGIESAAAQ 282 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R ++ E ++W + W+L + Sbjct: 283 HIASVRFS-----------GMIREKSGEAAQPFGEVWNLAKP-ASGTGGWLLAGIQQ 327 >gi|193620416|ref|XP_001947189.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-like [Acyrthosiphon pisum] Length = 409 Score = 69.1 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 66/176 (37%), Gaps = 11/176 (6%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 D I+ D L S+ ++ V+ ++ V DF +F+ + + I Sbjct: 228 DSDHILARATRSVTDTLSSVFHNAE----MSDVVTELCRVEPDFSLVNFIRQCET--DII 281 Query: 115 ---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171 +++ + ++ Y+ + ++ + ++ + ++ ++ + E Sbjct: 282 PNVLEAIAREDLIILKDWCFEAPYRVLSHPVTEHRQKGHQTYCKVLDVHNVDVVTGKLME 341 Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 + + I Q I D + L+I DP +V+ W R++ NP W L Sbjct: 342 HGPVLIISFSAQQIMYIKDVNGLIIEGDPHTVIRVMYTWAMCRDVNEVNPRAAWKL 397 >gi|290562045|gb|ADD38419.1| Probable 39S ribosomal protein L45, mitochondrial [Lepeophtheirus salmonis] Length = 340 Score = 68.8 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 13/145 (8%) Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSF----FEGKVHAIEKLVDSRVYQDFNDSLST 144 R I S DFD K FL +A+ Y + + G+ + K V + Y + ++ Sbjct: 145 RKIRSYEDDFDQKTFLLQAQEIY---IKAHKSLVENGEDECLLKYVTEKAYPEMVHNVRR 201 Query: 145 RKSNEKNVKS----SLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + + +KS ++V I ++ + +T+R Q A YD+ LI Sbjct: 202 KTLRWEFIKSLEPPTIVHIRTQDLLQ--KQNKFAQVTVRFHTQQTLAVYDRFGRLIHGSE 259 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225 + V++ F R++ +W L Sbjct: 260 VVAKDVLEYVVFERHLASIYESWRL 284 >gi|188996487|ref|YP_001930738.1| import inner membrane translocase subunit Tim44 [Sulfurihydrogenibium sp. YO3AOP1] gi|188931554|gb|ACD66184.1| import inner membrane translocase subunit Tim44 [Sulfurihydrogenibium sp. YO3AOP1] Length = 295 Score = 68.8 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 47/113 (41%), Gaps = 6/113 (5%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I ++ G + ++ + R+YQ + L K+ I++++I++ E + Sbjct: 179 IQKAWSNGDLSPVKNFLTDRMYQYLEEQLKDLKAKGLRNIVENPKIENLEIVHVEEEGDN 238 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV-RNIPPSNPNWVL 225 + +R+ I + D + ++ +D + W FV + + NW L Sbjct: 239 KVVIVRLDASAIDYTVDSNGNIVEADKYNPVSFTEYWAFVGKAL-----NWKL 286 >gi|217968675|ref|YP_002353909.1| import inner membrane translocase subunit Tim44 [Thauera sp. MZ1T] gi|217506002|gb|ACK53013.1| import inner membrane translocase subunit Tim44 [Thauera sp. MZ1T] Length = 294 Score = 68.8 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 74/227 (32%), Gaps = 28/227 (12%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 +F+++L F +L F + RD + Sbjct: 95 GFANFVMILLLAAAAFFVFRL------------IFRRGANAAAQQPARDLQYAGAPAGAA 142 Query: 67 KKDNLDSINELFP-IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 ++ P G ++ ++ + FD + F +A+ ++ + + G + Sbjct: 143 QQARPQQFEAGRPLAGGSVSAQSGLDKALASGFDAEGFARQAKLNFIRLQAANDAGNLDD 202 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + + V+ + ++ RK + + +V ++ I A E + +++R G Sbjct: 203 LREFTTPEVFAELCMQVNERKGAGQR--TDVVELNAQVIDVAE-ENDRYVVSVRFSGLLR 259 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + PE +IW + + S W++ + + Sbjct: 260 --------EQAEAAPEA---FDEIWHLSKPLAGSG-GWLIAGIQQSQ 294 >gi|225712958|gb|ACO12325.1| Probable 39S ribosomal protein L45, mitochondrial precursor [Lepeophtheirus salmonis] Length = 340 Score = 68.8 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 13/145 (8%) Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSF----FEGKVHAIEKLVDSRVYQDFNDSLST 144 R I S DFD K FL +A+ Y + + G+ + K V + Y + ++ Sbjct: 145 RKIRSYEDDFDQKTFLLQAQEIY---IKAHKSLVENGEDECLLKYVTEKAYPEMVHNVRR 201 Query: 145 RKSNEKNVKS----SLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + + +KS ++V I ++ + +T+R Q A YD+ LI Sbjct: 202 KTLRWEFIKSLEPPTIVHIRTQDLLQ--KQNKFAQVTVRFHTQQTLAVYDRFGRLIHGSE 259 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225 + V++ F R++ +W L Sbjct: 260 VVAKDVLEYVVFERHLASIYGSWRL 284 >gi|50085732|ref|YP_047242.1| hypothetical protein ACIAD2665 [Acinetobacter sp. ADP1] gi|49531708|emb|CAG69420.1| conserved hypothetical protein; putative membrane protein [Acinetobacter sp. ADP1] Length = 340 Score = 68.4 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 68/228 (29%), Gaps = 32/228 (14%) Query: 11 FLILLFAFITFFVFLQLRGVLGKK---TGNEKPFSGFFSGKYVF-----SKRDERGIITL 62 I+L A I FF+F + G K GN P++ +G + R G Sbjct: 136 IWIVLIAAIAFFIFRR----FGAKKKLAGN-NPYAPNNAGGSTPFSTSTTPRSNAGADNT 190 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 + + P GT + + +P FL AR + I Sbjct: 191 NIFGQSVGGGAAPTAAPFGTAYSNSGNQLPD---GTEPAAFLRIARQRFNHIQSVNSASN 247 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + I + + +Y + + + + ++ + + S E +++R Sbjct: 248 IEEIRRYLTPDLYASMYSDIMANQDQDV---AEFSNLN-AMVADTSTENGQYIVSVRF-- 301 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + ++W FV+ + W + + Sbjct: 302 ---------TGTVSEDLNSQPQPFSEVWHFVKPAGSTE-EWKVAGIQQ 339 >gi|194910892|ref|XP_001982246.1| GG11153 [Drosophila erecta] gi|190656884|gb|EDV54116.1| GG11153 [Drosophila erecta] Length = 361 Score = 68.4 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 21/209 (10%) Query: 28 RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83 RGVL + E+PF +G YV + D + I G K+ E ++ Sbjct: 94 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQKL-----EFLEKKSK 148 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +R I S +F DF EA++ Y + I + V R Y + ++ Sbjct: 149 SLMAVRKIRSYDENFSSDDFGAEAQDIYIQAHTHMAAKDKYKIREFVSERCYPEMMHNVK 208 Query: 144 TRKSNEKNVKSSLV-GIDDMKIINASI------EENTVYITIRIVGQFISASYDKDNLLI 196 K ++ + ++ ++++A + E +T+R Q + A YD+ L+ Sbjct: 209 D-----KTIRWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLM 263 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 I V++ F ++I W L Sbjct: 264 HGSEIITKDVLEYVVFEKHISNEYGKWRL 292 >gi|171464177|ref|YP_001798290.1| import inner membrane translocase subunit Tim44 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193715|gb|ACB44676.1| import inner membrane translocase subunit Tim44 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 303 Score = 68.4 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 72/223 (32%), Gaps = 26/223 (11%) Query: 7 DSGDFLILLFAFITFFVFLQL-RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 S LL A + FV + + R +L S G + S +R I Sbjct: 102 SSSLITGLLIAMLAGFVIMFVIRKLL-------PSLSSAGQGPNLSSNGMQRTGIDQAPR 154 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 ++ + N + + FD + FL + + + ++ +G + + Sbjct: 155 QEPAFTPAANAFGGVSAEPEPFQSTLP---PGFDKQTFLENVKQYFVTLQKAWDQGDLAS 211 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + + ++ L+ R + ++ +V I+ +++ + + +++ G Sbjct: 212 LREFTTPEMFATIQQDLAGRTDG--SNQTDVVTIN-AQLLGIETADGHYFCSVQFSG--- 265 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + S +IW + + WVL Sbjct: 266 -MIRELQGAPAS-------DFSEIWNLSKPVEGLG-GWVLAGI 299 >gi|307111739|gb|EFN59973.1| hypothetical protein CHLNCDRAFT_133085 [Chlorella variabilis] Length = 434 Score = 68.4 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 64/191 (33%), Gaps = 35/191 (18%) Query: 24 FLQLRGV-LGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82 F ++RG+ LG + FS ++ T D+++ L G Sbjct: 239 FARMRGLNLG--------ANPVFSKGREAAESIRERWETSDSPLVHRIQDAVDSLQTEGE 290 Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 + + +R+I + FD FL R + +V ++ E Sbjct: 291 Q-ARALREIRARDPSFDMVAFLRGLRADVQTVVKAYLESD-------------------- 329 Query: 143 STRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI 202 +L+ ++++++ E + ++ Q I+ + D ++ P+ Sbjct: 330 ----EGGLVPDPTLLDTSEVELVDIKWLEEEPIVVVQFTCQQINCTRDSFGNVVDGKPDE 385 Query: 203 F-GKVIDIWTF 212 +V W + Sbjct: 386 VHRRVAGWWVY 396 >gi|21355709|ref|NP_651072.1| mitochondrial ribosomal protein L45 [Drosophila melanogaster] gi|29611874|sp|Q9VCX3|RM45_DROME RecName: Full=Probable 39S ribosomal protein L45, mitochondrial; Short=L45mt; Short=MRP-L45; Flags: Precursor gi|7300891|gb|AAF56032.1| mitochondrial ribosomal protein L45 [Drosophila melanogaster] gi|17945151|gb|AAL48635.1| RE09223p [Drosophila melanogaster] gi|220947926|gb|ACL86506.1| mRpL45-PA [synthetic construct] gi|220957222|gb|ACL91154.1| mRpL45-PA [synthetic construct] Length = 361 Score = 68.4 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 21/209 (10%) Query: 28 RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83 RGVL + E+PF +G YV + D + I G K+ E ++ Sbjct: 94 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQKL-----EFLEKKSK 148 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +R I S +F DF EA++ Y + I + V R Y + ++ Sbjct: 149 SLMAVRKIRSYDENFSSDDFGAEAQDIYIQAHTHMAAKDKYKIREFVSERCYPEMMHNVK 208 Query: 144 TRKSNEKNVKSSLV-GIDDMKIINASI------EENTVYITIRIVGQFISASYDKDNLLI 196 K ++ + ++ ++++A + E +T+R Q + A YD+ L+ Sbjct: 209 D-----KTIRWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLM 263 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 I V++ F ++I W L Sbjct: 264 HGSEIITKDVLEYVVFEKHISNEYGKWRL 292 >gi|295675463|ref|YP_003603987.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. CCGE1002] gi|295435306|gb|ADG14476.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. CCGE1002] Length = 334 Score = 68.4 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 72/221 (32%), Gaps = 22/221 (9%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 +++ A I V +R + TG ++ + S Sbjct: 133 VIVIALIAMVVIWLIR----RFTGRKRDAAQPAYAGTAPSLNTRGTDYIQEPRYTAPPTG 188 Query: 73 SINELFPIGTRLNK-VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 S L P G L + SV FD + FL A+ + + ++ G + I + Sbjct: 189 S--YLEPQGNPLTTPSLGATPSVPAGFDSEAFLRNAKVYFVRLQAAWDVGNIDDIREFTT 246 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 ++ + L+ R + + ++ +V ++ +++ + ++R Sbjct: 247 PEMFAEVRVDLTARGTQQN--QTDVVQLN-AELLGVEERATEYFASVRFS---------- 293 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 L+ + +++W + W+L + E Sbjct: 294 -GLIREAPGAAAEPFVEVWNLTKANRAGE-GWLLAGIQQVE 332 >gi|158425088|ref|YP_001526380.1| hypothetical protein AZC_3464 [Azorhizobium caulinodans ORS 571] gi|158331977|dbj|BAF89462.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 335 Score = 68.4 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 47/132 (35%), Gaps = 9/132 (6%) Query: 104 LNEAR-NSYEA----IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG 158 L A +++E I ++ + + +LV + F + L + + V Sbjct: 207 LKGADFDAFEKLLSDIQAAYSREDRNKLAELVTPEILGYFEEELRANAERGVRNQVNDVK 266 Query: 159 IDDMKIINASIEENTVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRNIP 217 + + A E Y T+ + + D+ L + + + ++WTF+R Sbjct: 267 LLQGDLSEAWREGQFEYATVALRYEARDTMRDRTTGALAAGSTDAPSQSTEVWTFIRLRG 326 Query: 218 PSNPNWVLISTK 229 W L + + Sbjct: 327 QP---WKLSAIQ 335 >gi|118785408|ref|XP_314650.3| AGAP008539-PA [Anopheles gambiae str. PEST] gi|116127723|gb|EAA10193.3| AGAP008539-PA [Anopheles gambiae str. PEST] Length = 418 Score = 68.4 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 57/179 (31%), Gaps = 12/179 (6%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNS---- 110 + + D + + T L+ + ++ + F+ K FL Sbjct: 232 ESENVAIRTSRALTDKVSQVMGNLFSKTELSAALTEVCRIDPSFEAKQFLQFCERHVIPN 291 Query: 111 -YEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 E+I+ G++ + Y + +S L+ I+++++ + Sbjct: 292 VLESIL----RGELDVLRDWCFESAYSVIATPIVQGLEAGCRFESKLLDIENVELAMGQV 347 Query: 170 EENTVYITIRIVGQFISASYDKDN-LLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 E + + Q I + +I DPE + W R+ NP W + Sbjct: 348 MEQGPVLIVTFQAQQIVCVREGTGAAVIEGDPEKVFRCHHAWVLCRDPSELNPQAAWRI 406 >gi|319784935|ref|YP_004144411.1| import inner membrane translocase subunit Tim44 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170823|gb|ADV14361.1| import inner membrane translocase subunit Tim44 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 327 Score = 68.0 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 46/118 (38%), Gaps = 4/118 (3%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++F A+ + V + ++ L+ + + + + I + E+ Sbjct: 213 VQEAFGREDHAALRRAVTPEMVSYLSEELADNAQKGLRNEVTDITLLQADIAESWREDER 272 Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 Y T + + + ++ +++ D + + ++WTFVR NW L + + Sbjct: 273 DYATAALRYESRDVTRERASGKIVAGDDDHPTETTELWTFVRENGS---NWKLSAIQA 327 >gi|283851351|ref|ZP_06368633.1| import inner membrane translocase subunit Tim44 [Desulfovibrio sp. FW1012B] gi|283573301|gb|EFC21279.1| import inner membrane translocase subunit Tim44 [Desulfovibrio sp. FW1012B] Length = 309 Score = 67.6 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 58/199 (29%), Gaps = 25/199 (12%) Query: 33 KKTGNEKP-FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDI 91 ++T +E P + + V R+ P G ++ Sbjct: 132 RRTASEGPSMARTYEAAPVPPVREPLREAAANGWSNLGASPQAGASAPAGPQVPAG---- 187 Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151 FD DFL A+ + + S+ + I F + + + + + Sbjct: 188 ------FDVDDFLTGAKALFGRLQKSWSARDLADIAAFSTP----AFMEDVRKQAAADPT 237 Query: 152 VKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWT 211 + V + D K++ + T + + PE V ++W Sbjct: 238 PTPTDVLLVDAKLLEVRSQGTTTIASAYFDTLLR-------EDPKAGQPEQ---VREVWH 287 Query: 212 FVRNIPPSNPNWVLISTKL 230 FVR W L + + Sbjct: 288 FVRRNDTPGDTWRLDAIQQ 306 >gi|306840266|ref|ZP_07473040.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO2] gi|306289793|gb|EFM60975.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO2] Length = 342 Score = 67.6 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 71/228 (31%), Gaps = 12/228 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M + + A I FV +R ++ + + S+ G+G Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQTAAAGAGHAGAQPFGASQPFGSAKSASGQG 182 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 S+N V + + V + D F I ++ A Sbjct: 183 SFSGRTPSVNPFETKQAAAPVVEDEPMDVGQE-DLDRF----EQMLVDIQGAYGREDYAA 237 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + KL + L S K + V + + A E N Y T+ + I Sbjct: 238 LRKLTTPEAMSYLAEELGEIASGGKRNEVKDVRLLQGDVSEAWREGNVEYATVAMRYSAI 297 Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D+ ++ +P + +++WTF R + W L + + E Sbjct: 298 DVMVDRTSGAIVEGNPNEPVESVELWTFTRTDGGA---WQLAAIQGTE 342 >gi|319942109|ref|ZP_08016427.1| hypothetical protein HMPREF9464_01646 [Sutterella wadsworthensis 3_1_45B] gi|319804319|gb|EFW01203.1| hypothetical protein HMPREF9464_01646 [Sutterella wadsworthensis 3_1_45B] Length = 330 Score = 67.2 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 59/136 (43%), Gaps = 17/136 (12%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 DFD + FL AR++Y + ++ G V I + ++ L R+ + + + Sbjct: 207 DFDREGFLKTARDNYLKLQQAWDTGNVIEISDFTSNEIFTAVTHQL--RERKGEVYHTEV 264 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 +++ +++ + ++ T Y ++R G ++S +PE +IW + + Sbjct: 265 KSLEN-ELLGIAQQDGTYYASVRFFGSL----------VVSGEPET---FDEIWVLEKPV 310 Query: 217 PPSNPNWVLISTKLGE 232 + W+L + + E Sbjct: 311 TGTG-GWLLCAIRQNE 325 >gi|115523579|ref|YP_780490.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisA53] gi|115517526|gb|ABJ05510.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisA53] Length = 329 Score = 67.2 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 8/126 (6%) Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164 ++E I +++ +G + + L + F L K+ K S V + + Sbjct: 207 EAFERLLGEIQETWSKGDIGHLHMLATPEMVSYFTSDLDANKARGVVNKVSDVKLLQGDL 266 Query: 165 INASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 + E T Y T+ + + + D ++ + + ++WTF R W Sbjct: 267 AESWREGETDYATVAMRFSLVDKTTDASGAIVEGS-DQPIEATEVWTFARRQGSD---WE 322 Query: 225 LISTKL 230 L + + Sbjct: 323 LSAIQQ 328 >gi|239832154|ref|ZP_04680483.1| import inner membrane translocase subunit Tim44 [Ochrobactrum intermedium LMG 3301] gi|239824421|gb|EEQ95989.1| import inner membrane translocase subunit Tim44 [Ochrobactrum intermedium LMG 3301] Length = 345 Score = 67.2 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 71/229 (31%), Gaps = 13/229 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK- 64 M + + A I FV +R ++ + + K L Sbjct: 128 MFGLILQVAVIALIAMFV---MRMFANRRQPAAAGAGNAGAQPFGAPKSAAPQAGPLAGF 184 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 G + +++ V + + V + D F + ++ Sbjct: 185 GGRTPSVNPFETKQEAAPAAPAVEDEPMDVGQE-DLDRF----EQMLSEVQTAYGREDYA 239 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 A+ KL + L S+ + V + + A E N Y T+ I Sbjct: 240 ALRKLTTPEAMSYLAEELGEIASSGMRNEVKDVKLLQGDVSEAWREGNAEYATVAIRYSA 299 Query: 185 ISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 I D++ ++ +P + +++WTF R + W L + + E Sbjct: 300 IDVMLDRNTGTVVEGNPNEPVESVELWTFTR---QDSGEWQLAAIQGTE 345 >gi|195502658|ref|XP_002098321.1| GE10319 [Drosophila yakuba] gi|194184422|gb|EDW98033.1| GE10319 [Drosophila yakuba] Length = 361 Score = 66.8 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 79/209 (37%), Gaps = 21/209 (10%) Query: 28 RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83 RGVL + E+PF +G YV + D + I G K+ E ++ Sbjct: 94 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQKL-----EFLEKKSK 148 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +R I S F DF EA++ Y + + I + V R Y + ++ Sbjct: 149 SLMAVRKIRSYEESFSTDDFGAEAQDIYIQAHTHMAAKEKYKIREFVSERCYPEMMHNVK 208 Query: 144 TRKSNEKNVKSSLV-GIDDMKIINASI------EENTVYITIRIVGQFISASYDKDNLLI 196 K + + ++ ++++A + E +T+R Q + A YD+ L+ Sbjct: 209 D-----KTIHWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLM 263 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 + V++ F ++I W L Sbjct: 264 HGSEIVTKDVLEYVVFEKHISNEYGKWRL 292 >gi|153009251|ref|YP_001370466.1| import inner membrane translocase subunit Tim44 [Ochrobactrum anthropi ATCC 49188] gi|151561139|gb|ABS14637.1| import inner membrane translocase subunit Tim44 [Ochrobactrum anthropi ATCC 49188] Length = 348 Score = 66.8 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 75/232 (32%), Gaps = 16/232 (6%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M + + A I FV +++ N + + +G G Sbjct: 128 MFGLLLQVAVIALIAMFV-MRMFA-------NRRQPAAAGAGNAGAQPFGAAKTAAPQAG 179 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA----IVDSFFEG 121 + + P T+ + + +P D E + +E + ++ Sbjct: 180 SQAGFGGRTPSVNPFETKQAAAPVTPAAPAVEDEPMDVGQEDLDRFEQMLAEVQTAYGRE 239 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 A+ KL + L S+ + V + + A E + Y T+ I Sbjct: 240 DYAALRKLATPEAMSYLAEELGEIASSGMRNEVKDVKLLQGDVSEAWREGDVEYATVAIR 299 Query: 182 GQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 I D++ ++ +P+ + +++WTF R W+L + + E Sbjct: 300 YSAIDVMLDRNTGAVVEGNPDEPVESVELWTFTR---TDGGEWLLAAIQGTE 348 >gi|260459996|ref|ZP_05808249.1| import inner membrane translocase subunit Tim44 [Mesorhizobium opportunistum WSM2075] gi|259034207|gb|EEW35465.1| import inner membrane translocase subunit Tim44 [Mesorhizobium opportunistum WSM2075] Length = 326 Score = 66.8 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 43/119 (36%), Gaps = 4/119 (3%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++F A+ + + ++ L+ + S + + I + E++ Sbjct: 211 VQEAFGREDHAALRRATTPEMVSYLSEELADNAQKGLRNEVSDITLLQADIAESWREDDR 270 Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 Y T + + ++ + D + + ++WTF+R NW L + + Sbjct: 271 DYATAALRYESRDVMRERASGKAVEGDDDHPTETTELWTFMRENGS---NWKLSAIQQA 326 >gi|288959507|ref|YP_003449848.1| hypothetical protein AZL_026660 [Azospirillum sp. B510] gi|288911815|dbj|BAI73304.1| hypothetical protein AZL_026660 [Azospirillum sp. B510] Length = 365 Score = 66.4 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 71/227 (31%), Gaps = 21/227 (9%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 ++++F F + R + + + + L + Sbjct: 155 IILVVFLVRLAMRFFRNRS--------QTANTAASGSGPLGGNQPAYAGGPLNRDAADVG 206 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE----AIVDSFFEGKVHAI 126 + + G R + P DF S+E I ++ V A+ Sbjct: 207 YNPMGNHGMGGGNAGPAPRRQAADEIGIQPADF-----ESFERLLTTIQTAYGREDVEAL 261 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + + ++ F+D L+ ++ K S V + + E Y T+ + I Sbjct: 262 RGVTTAEMFSYFSDDLAGNRNRGLVNKVSDVRLLQGDLAEGWREGPQEYATVAMRFSLID 321 Query: 187 ASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + ++ ++ + + ++WTFVR W L + + Sbjct: 322 VTVERASGRVVEGNASQPTEATELWTFVRQHGGQ---WRLSAIQQTH 365 >gi|307728446|ref|YP_003905670.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. CCGE1003] gi|307582981|gb|ADN56379.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. CCGE1003] Length = 330 Score = 66.4 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 75/219 (34%), Gaps = 22/219 (10%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 I++ A + +R +G+K +P S G + + Sbjct: 129 IIVIALLAMIGIWLIRRFMGRKRDASQPAYA------GQSPSLNSGATGYTQEPRYTAPP 182 Query: 73 SINELFPIGTRLNK-VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 + + L P G L + SV FD + FL A+ + + ++ G + I + Sbjct: 183 AGSYLEPQGNPLTTPSVGATPSVPAGFDSEAFLRNAKVYFVRLQAAWDVGNIEDIREFTT 242 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 ++ + L++R S ++ ++ +V ++ ++ N + ++R G + Sbjct: 243 PEMFAEVRVDLASRGS--ESNQTDVVQLN-ADLLGVEERANEYFASVRFSG----LIREA 295 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +++W + W+L + Sbjct: 296 LGAPAE-------PFVEVWNLSKANRAGE-GWLLAGIQQ 326 >gi|306844172|ref|ZP_07476765.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO1] gi|306275447|gb|EFM57184.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO1] Length = 342 Score = 66.4 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 71/228 (31%), Gaps = 12/228 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M + + A I FV +R ++ + + S+ G+G Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQTAAAGAGHAGAQPFGASQPFGSAKSASGQG 182 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 S+N V + + V + D F I ++ A Sbjct: 183 SFSGRTPSVNPFETKQAAAPVVEDEPMDVGQE-DLDRF----EQMLVDIQGAYGREDYAA 237 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + KL + L S K + V + + A E N Y T+ + I Sbjct: 238 LRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAI 297 Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D+ ++ +P + +++WTF R + W L + + E Sbjct: 298 DVMVDRTSGAIVEGNPNEPVESVELWTFTRTDGGA---WQLAAIQGTE 342 >gi|293609901|ref|ZP_06692203.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828353|gb|EFF86716.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123134|gb|ADY82657.1| hypothetical protein BDGL_002071 [Acinetobacter calcoaceticus PHEA-2] Length = 323 Score = 66.4 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 73/226 (32%), Gaps = 26/226 (11%) Query: 11 FLILLFAFITFFVFLQLRGVLGKK---TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 +LL A + FFVF + LG K GN P++ +G+ F + G Sbjct: 119 IWVLLAAALAFFVFRK----LGSKKKLAGN-NPYAPNSNGQNPFGRSAAPQAAPRNAGDN 173 Query: 68 KDNL-DSINELFPIGTRLNKVMRDIVSVYTDFD-PKDFLNEARNSYEAIVDSFFEGKVHA 125 + S+ V + D P FL AR + I + Sbjct: 174 TNIFGQSVGGGAATQAPFGGVTTSNGNQLPDGSEPAAFLRIARQRFNHIQSMNTASNIEE 233 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 I + + +Y + + + + + ++ M + +A+ E +++R Sbjct: 234 IRRYLTPELYSSMYNDIMENQDQDV---AEFSNLNAMVVDSAT-ENGQYVVSVRF----- 284 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + + +IW FV+ +WV+ + Sbjct: 285 ------TGTVSEDLNSLPQPFTEIWHFVKPAGSQQ-DWVVAGIQQA 323 >gi|329114644|ref|ZP_08243403.1| Import Inner Membrane Translocase Subunit [Acetobacter pomorum DM001] gi|326696124|gb|EGE47806.1| Import Inner Membrane Translocase Subunit [Acetobacter pomorum DM001] Length = 337 Score = 66.4 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 2/117 (1%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I ++ + + A++++ + FN+ LS S S V + A E Sbjct: 220 IQTAWNQQNIPAMQQMATPEMVSYFNEQLSALASQGARNVVSDVHFIQGDLAEAWRENGM 279 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + T+ + I + + +I + ++WTF R P W+L + + Sbjct: 280 DFATVAMRYSLIDLTTNATGQVIQGSSTEPVNITELWTFTR--PSRGGRWLLSAIQQ 334 >gi|289740307|gb|ADD18901.1| mitochondrial ribosomal protein L45 [Glossina morsitans morsitans] Length = 355 Score = 66.1 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 78/210 (37%), Gaps = 23/210 (10%) Query: 28 RGVLGKKTGNEKPF-----SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82 RGVL + E+PF G F +R II+ K+K + Sbjct: 82 RGVLPPRPWLERPFHISCTGGIFEPYVPPEGDGKRSIISAAGAKQKFVF------LEKKS 135 Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 + +R I + DF DF A++ Y + H + +LV R Y + ++ Sbjct: 136 KSMLAVRKIRNYEEDFSTDDFAAAAQDVYIGAHQTMALKDKHKLRELVTERCYPEIMHNV 195 Query: 143 STRKSNEKNVKSSLV------GIDDMKIINASIEEN-TVYITIRIVGQFISASYDKDNLL 195 +K + S + + ++ + +EN IT+R Q + A YD+ L Sbjct: 196 -----RDKTIHWSFLKSLEPPYVVHARVTDVISKENLFAQITVRFHTQQLLAIYDRFGRL 250 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 + + V++ F ++I W L Sbjct: 251 MHGSEIVAKDVLEYAVFEKHISNEYGKWRL 280 >gi|182677331|ref|YP_001831477.1| import inner membrane translocase subunit Tim44 [Beijerinckia indica subsp. indica ATCC 9039] gi|182633214|gb|ACB93988.1| import inner membrane translocase subunit Tim44 [Beijerinckia indica subsp. indica ATCC 9039] Length = 321 Score = 66.1 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 64/212 (30%), Gaps = 27/212 (12%) Query: 22 FVFLQLRGVLG-KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPI 80 F+ +L V+G + + + G G + + G G G ++ PI Sbjct: 132 FLLFKL--VMGFLRNRQQPAYQGADQGGQAPGNQPQGGNFGFGGGPGPGRAGVNDQPLPI 189 Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T ++ I SF ++ + L + F + Sbjct: 190 ETADYTAFEQKLAA-------------------IQSSFSNEDLNGLRLLTTPEMASYFAE 230 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINA--SIEENTVYITIRIVGQFISASYDKDNLLISS 198 ++ + K S V + + A + +R ++S Sbjct: 231 EIAGNATKGFVNKISDVKLLQGDVAEAWREANGEYATVAMRFSLTDRMIER-ASGRIVSG 289 Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +V +IWTF R + + +W L + + Sbjct: 290 --GTPEQVTEIWTFFRPLGATPADWKLAAIQQ 319 >gi|303248706|ref|ZP_07334959.1| import inner membrane translocase subunit Tim44 [Desulfovibrio fructosovorans JJ] gi|302489871|gb|EFL49799.1| import inner membrane translocase subunit Tim44 [Desulfovibrio fructosovorans JJ] Length = 303 Score = 66.1 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 65/219 (29%), Gaps = 30/219 (13%) Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73 L+ F+ + LG++ + + S + + + Sbjct: 114 LILIGGGLFLLFRF---LGRR---------RMASQSGPSMARTYEASPMREAAGSGWANL 161 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 + +V FD +DFL+ A+ + + S+ V I Sbjct: 162 GAASSGPQAQAASG----PNVPPGFDVEDFLSGAKTLFGRLQRSWSARDVSDIATFATP- 216 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 F + + + + + N + + V + D K++ T + Sbjct: 217 ---AFMEDVRRQAAEDPNPEPTDVLLVDAKLLEVRKMGETTIASAYFDTLMR-------E 266 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + PE V +IW F R NW L + + E Sbjct: 267 DPKAGQPEQ---VREIWHFARRDDVPGDNWRLDAIQQLE 302 >gi|303327521|ref|ZP_07357962.1| Tim44 domain protein [Desulfovibrio sp. 3_1_syn3] gi|302862461|gb|EFL85394.1| Tim44 domain protein [Desulfovibrio sp. 3_1_syn3] Length = 310 Score = 66.1 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 77/231 (33%), Gaps = 27/231 (11%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 MD +L+F + +F + R ++ + D R +G Sbjct: 99 MDIIIIGLLVFLGLK--LFARFRN---RQAPAPAGAGAQGASTMGGLHGDLREDSASSQG 153 Query: 66 KKKDNLDS---INELFPIGTRL-NKVMRDIVSVY--TDFDPKDFLNEARNSYEAIVDSFF 119 ++DN + + P G + SV FD +FL A+ +Y + +S+ Sbjct: 154 MRRDNAAAGWDVLRNAPQGGAGQAQAFDAAPSVDVPQGFDVDEFLRGAKMAYSRLQNSWD 213 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 + + I + V ++ + E ++ V + + +++ + + + Sbjct: 214 KRDLDDIAQFATPAVLD----AVREQLEAEPTPSTTEVLLVNAQLLGVENDGDEQRAQVF 269 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + D + V ++W FVR I +W L + Sbjct: 270 FDVLMRESP----------DQQAPSSVREVWHFVRPIAGG--SWKLDGIQQ 308 >gi|330993425|ref|ZP_08317360.1| hypothetical protein SXCC_03323 [Gluconacetobacter sp. SXCC-1] gi|329759455|gb|EGG75964.1| hypothetical protein SXCC_03323 [Gluconacetobacter sp. SXCC-1] Length = 324 Score = 66.1 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 2/117 (1%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I ++ + V A++ + + FN+ LS S S + + ++ + E Sbjct: 207 IQTAWSQQNVAAMQHMATPEMVSYFNNQLSELASRGARNVVSDIRFERGDLVESWRENGM 266 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 Y T+ + I + D +I DP V ++WTFVR W+L + + Sbjct: 267 DYATVAMQYSMIDITTDMTGRVIDGDPANRTTVAELWTFVRAAGTG--TWLLSAIQQ 321 >gi|194746347|ref|XP_001955642.1| GF18867 [Drosophila ananassae] gi|190628679|gb|EDV44203.1| GF18867 [Drosophila ananassae] Length = 360 Score = 66.1 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 80/212 (37%), Gaps = 27/212 (12%) Query: 28 RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83 RGVL + E+PF +G YV + D + I G K+ E ++ Sbjct: 92 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISSSGAKQKL-----EFLEKKSK 146 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS---FFEGKVHAIEKLVDSRVYQDFND 140 +R I S F +F EA+ Y + + + I + V R Y + Sbjct: 147 SLMAVRKIRSYEESFSSDEFGAEAQEIY---IKAHQHMAAKDKYQIREYVSERCYPEMMH 203 Query: 141 SLSTRKSNEKNVKSSLV-GIDDMKIINASI------EENTVYITIRIVGQFISASYDKDN 193 ++ K ++ + ++ ++++A + E +T+R Q + A YD+ Sbjct: 204 NVKD-----KTIRWRFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFG 258 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 L+ + V++ F ++I W L Sbjct: 259 RLMHGSEILTKDVLEYVVFEKHISNEYGKWRL 290 >gi|254719318|ref|ZP_05181129.1| import inner membrane translocase subunit Tim44 [Brucella sp. 83/13] gi|265984320|ref|ZP_06097055.1| import inner membrane translocase subunit Tim44 [Brucella sp. 83/13] gi|306839093|ref|ZP_07471910.1| import inner membrane translocase subunit Tim44 [Brucella sp. NF 2653] gi|264662912|gb|EEZ33173.1| import inner membrane translocase subunit Tim44 [Brucella sp. 83/13] gi|306405640|gb|EFM61902.1| import inner membrane translocase subunit Tim44 [Brucella sp. NF 2653] Length = 342 Score = 66.1 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 71/228 (31%), Gaps = 12/228 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M + + A I FV +R ++ + + S+ G+G Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQTAAAGAGHAGAQPFGASQPFGSAKSASGQG 182 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 S+N V + + V + D F I ++ A Sbjct: 183 SFSGRTPSVNPFETKQAAAPVVEDEPMDVGQE-DLDRF----EQMLVDIQGAYGREDYAA 237 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + KL + L S K + V + + A E N Y T+ + I Sbjct: 238 LRKLTTPEAMSCLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAI 297 Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D+ ++ +P + +++WTF R + W L + + E Sbjct: 298 DVMVDRTSGAIVEGNPNEPVESVELWTFTRIDGGA---WQLAAIQGTE 342 >gi|195331089|ref|XP_002032235.1| GM26453 [Drosophila sechellia] gi|194121178|gb|EDW43221.1| GM26453 [Drosophila sechellia] Length = 362 Score = 66.1 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 21/209 (10%) Query: 28 RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83 RGVL + E+PF +G YV + D + I G K+ E ++ Sbjct: 94 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQK-----FEFLEKKSK 148 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +R I S +F DF EA++ Y + I + V R Y + ++ Sbjct: 149 SLMAVRKIRSYDENFRSDDFGAEAQDIYIQAHTHMAAKDKYKIREFVSERCYPEMMHNVK 208 Query: 144 TRKSNEKNVKSSLV-GIDDMKIINASI------EENTVYITIRIVGQFISASYDKDNLLI 196 K ++ + ++ ++++A + E +T+R Q + A YD+ L+ Sbjct: 209 D-----KTIRWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLM 263 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 I V++ F ++I W L Sbjct: 264 HGSEIITKDVLEYVVFEKHISNEYGKWRL 292 >gi|58040295|ref|YP_192259.1| putative transmembrane protein [Gluconobacter oxydans 621H] gi|58002709|gb|AAW61603.1| Putative transmembrane protein [Gluconobacter oxydans 621H] Length = 316 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 2/118 (1%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I ++ + A+ + + FN LS S S V + A E N Sbjct: 200 IQAAWSAQNMRALASMATPEMTGYFNAQLSDLASRGARNIVSNVQFQRGDLSEAWREGNL 259 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 Y T+ + + D +I V ++WTFVR NW+L + + Sbjct: 260 TYATVAMRYSMTDVTTDSMGNVIDGSSTEPVTVTELWTFVRADGRG--NWILSAIQQA 315 >gi|15965783|ref|NP_386136.1| putative transmembrane protein [Sinorhizobium meliloti 1021] gi|15075052|emb|CAC46609.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021] Length = 276 Score = 65.7 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 4/120 (3%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ A+ +L + LS + + V + + A E + Sbjct: 159 VQAAYGAEDYAALRRLTTPEAMSYLAEELSDNATKGLKNEVRDVHLVQGDLAEAWKENGS 218 Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 Y T+ + + + D+ ++S D + + ++IWTF R W + + + E Sbjct: 219 DYATVAMRYESVDVVRDRATGRVVSGDADRPTEAVEIWTFQRKPGAD---WQVSAIQGVE 275 >gi|221211249|ref|ZP_03584228.1| Tim44 domain protein [Burkholderia multivorans CGD1] gi|221168610|gb|EEE01078.1| Tim44 domain protein [Burkholderia multivorans CGD1] Length = 340 Score = 65.7 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 73/237 (30%), Gaps = 33/237 (13%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDE-RGIIT 61 F M S +I L A I +R + ++ +P +S S + Sbjct: 124 FAGMMSNLIVIALLAMIG---IWLVRKFMNRR----RPQEPAYSVGSAPSSSGGYAQSPS 176 Query: 62 LGKGKKKDNLDSINELFPIGTRL--------NKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 G S + R+ V V FD FL A+ S+ Sbjct: 177 FQPGSTSQYSGSGSNYANEAQRVFNGGAPAAGAAAAAPVQVPAGFDTDAFLRSAKVSFVR 236 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ +G + I + ++ + L +R + ++ +V + D +++ Sbjct: 237 LQAAWDQGNLADIREFTTPEMFAEIKIDLDSR--GNEPNQTDVVQL-DAELVALEDRGIE 293 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R L+ S ++W ++ W+L + Sbjct: 294 QSASVRF-----------HGLIRESSNAAAEPFDEVWNLSKSGGQG---WLLAGIQQ 336 >gi|33146500|dbj|BAC79609.1| hypothetical protein [Oryza sativa Japonica Group] gi|50510250|dbj|BAD31456.1| hypothetical protein [Oryza sativa Japonica Group] Length = 353 Score = 65.7 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 11/125 (8%) Query: 96 TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155 T + K+F ++A Y+ + G ++ K++ R++ + L R+S +V Sbjct: 206 TGYTKKEFYDQAFKIYKEVNTLMAHGDTSSLRKILTERMHSTIKNELKKRQSMWSSVHWE 265 Query: 156 LV---------GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 LV + + +++ + +T+ V + +Y+ ++S D + Sbjct: 266 LVEPAVCIRTLRARMIGLDKNDLDKAFIQLTLEFVTKQKFEAYNTKGEVVSGDKSKELII 325 Query: 207 IDIWT 211 +WT Sbjct: 326 --VWT 328 >gi|92115162|ref|YP_575090.1| import inner membrane translocase, subunit Tim44 [Chromohalobacter salexigens DSM 3043] gi|91798252|gb|ABE60391.1| import inner membrane translocase, subunit Tim44 [Chromohalobacter salexigens DSM 3043] Length = 272 Score = 65.3 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 65/218 (29%), Gaps = 44/218 (20%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 ILL A I +F F LR ++ G +++ + T Sbjct: 95 ILLVALIAWFAFRLLRA---RRV-------ATSEGPQHQARQPHQEATTTSPFSSAGTSM 144 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + P FD + FL A+ + + ++ + I++ V Sbjct: 145 PSSGATPE----------------WFDKERFLGGAKEHFMTLQRAWDNNDLARIQEYVTP 188 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 +Y R N ++ +V + ++ + ++ G D++ Sbjct: 189 TLYNLLR---EERAQQPANNRTEIVRLF-AELGDVREIGQQAEASVLFHG-----VLDEN 239 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + + W +R++ P W + + Sbjct: 240 GER--------NEFNETWHLIRDLREGAP-WYVQGIEQ 268 >gi|302848231|ref|XP_002955648.1| hypothetical protein VOLCADRAFT_106869 [Volvox carteri f. nagariensis] gi|300259057|gb|EFJ43288.1| hypothetical protein VOLCADRAFT_106869 [Volvox carteri f. nagariensis] Length = 296 Score = 65.3 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 17/146 (11%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 F D + +Y+++ + G + E V + ++ R+ V+ + Sbjct: 143 GFSKTDLQSRVLAAYKSVNLAIATGDMRYAEPFVTESMLLRLTGEVT-RRGRAARVEWRM 201 Query: 157 VG---IDDMKIINASIEEN--------TVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 V D+K++ ++ +N V T R+ + + A YD LI+ DP Sbjct: 202 VSEPDPRDIKLVCGTVVQNPLKQGRLHFVQWTARVPSRQVVAVYDARGNLIAGDPHKELD 261 Query: 206 VIDIWTFVRNIPPSNPNWVLISTKLG 231 V+D W F R I + L++ + G Sbjct: 262 VVDYWVFERPILKA-----LVAPRPG 282 >gi|150397061|ref|YP_001327528.1| import inner membrane translocase subunit Tim44 [Sinorhizobium medicae WSM419] gi|150028576|gb|ABR60693.1| import inner membrane translocase subunit Tim44 [Sinorhizobium medicae WSM419] Length = 333 Score = 65.3 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 59/198 (29%), Gaps = 12/198 (6%) Query: 37 NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT 96 N++P S S + + P +I Sbjct: 145 NQRPAYSAPSATARTSATAGNPPSFRIPRIGEAVGSAAAPRSPAAAPAYGGGEEISVGQD 204 Query: 97 DFDP-KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155 D D + L + +Y A+ +L + LS + + Sbjct: 205 DLDRFETMLKGVQAAYG-------AEDYAALRRLTTPEAMSYLAEELSDNATKGLKNEVR 257 Query: 156 LVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVR 214 V + + A + Y T+ + + + D+ ++S D + + ++IWTFVR Sbjct: 258 DVHLVQGDLAEAWRGDGRDYATVAMRYESVDVMRDRATGDVVSGDADRPTEAVEIWTFVR 317 Query: 215 NIPPSNPNWVLISTKLGE 232 W + + + E Sbjct: 318 RPGAD---WQVSAIQGVE 332 >gi|307311318|ref|ZP_07590961.1| import inner membrane translocase subunit Tim44 [Sinorhizobium meliloti BL225C] gi|307318851|ref|ZP_07598283.1| import inner membrane translocase subunit Tim44 [Sinorhizobium meliloti AK83] gi|306895572|gb|EFN26326.1| import inner membrane translocase subunit Tim44 [Sinorhizobium meliloti AK83] gi|306899619|gb|EFN30247.1| import inner membrane translocase subunit Tim44 [Sinorhizobium meliloti BL225C] Length = 337 Score = 65.3 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 4/120 (3%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ A+ +L + LS + + V + + A E + Sbjct: 220 VQAAYGAEDYAALRRLTTPEAMSYLAEELSDNATKGLKNEVRDVHLVQGDLAEAWKENGS 279 Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 Y T+ + + + D+ ++S D + + ++IWTF R W + + + E Sbjct: 280 DYATVAMRYESVDVVRDRATGRVVSGDADRPTEAVEIWTFQRKPGAD---WQVSAIQGVE 336 >gi|258542756|ref|YP_003188189.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-01] gi|256633834|dbj|BAH99809.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-01] gi|256636893|dbj|BAI02862.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-03] gi|256639946|dbj|BAI05908.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-07] gi|256643002|dbj|BAI08957.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-22] gi|256646057|dbj|BAI12005.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-26] gi|256649110|dbj|BAI15051.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-32] gi|256652097|dbj|BAI18031.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655154|dbj|BAI21081.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-12] Length = 323 Score = 64.9 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 2/117 (1%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I ++ + + A++++ + FN+ LS S S V + A E Sbjct: 206 IQTAWNQQNIAAMQQMATPEMVSYFNEQLSALASQGARNVVSDVHFIQGDLAEAWRENGM 265 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + T+ + I + + +I + ++WTF R P W+L + + Sbjct: 266 DFATVAMRYSLIDLTTNAMGQVIQGSSTEPVNITELWTFTR--PSRGGRWLLSAIQQ 320 >gi|195158248|ref|XP_002020004.1| GL13752 [Drosophila persimilis] gi|194116773|gb|EDW38816.1| GL13752 [Drosophila persimilis] Length = 352 Score = 64.9 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 77/209 (36%), Gaps = 21/209 (10%) Query: 28 RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83 RGVL + E+PF +G YV + D + I G K+ E ++ Sbjct: 85 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISSSGAKQKL-----EFLEKKSK 139 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +R I S F F EA+ Y A + + I + V R Y + ++ Sbjct: 140 SLIAVRKIRSYDESFSSDQFGAEAQEIYVAAHTLMAAKEKYKIREYVSERCYPEMMHNVK 199 Query: 144 TRKSNEKNVKSSLV-GIDDMKIINAS------IEENTVYITIRIVGQFISASYDKDNLLI 196 K + + ++ ++++A E +T+R Q + A YD+ L+ Sbjct: 200 D-----KTIHWRFLQSLEPPRVVHARCTEVITKENQFAQVTVRFHTQQMLAIYDRFGRLM 254 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 + V++ F ++I W L Sbjct: 255 HGSEILTKDVLEYVVFEKHISNEYGKWRL 283 >gi|125773335|ref|XP_001357926.1| GA19976 [Drosophila pseudoobscura pseudoobscura] gi|54637660|gb|EAL27062.1| GA19976 [Drosophila pseudoobscura pseudoobscura] Length = 352 Score = 64.9 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 77/209 (36%), Gaps = 21/209 (10%) Query: 28 RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83 RGVL + E+PF +G YV + D + I G K+ E ++ Sbjct: 85 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISSSGAKQKL-----EFLEKKSK 139 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +R I S F F EA+ Y A + + I + V R Y + ++ Sbjct: 140 SLIAVRKIRSYDESFSSDQFGAEAQEIYVAAHTLMAAKEKYKIREYVSERCYPEMMHNVK 199 Query: 144 TRKSNEKNVKSSLV-GIDDMKIINAS------IEENTVYITIRIVGQFISASYDKDNLLI 196 K + + ++ ++++A E +T+R Q + A YD+ L+ Sbjct: 200 D-----KTIHWRFLQSLEPPRVVHARCTEVITKENQFAQVTVRFHTQQMLAIYDRFGRLM 254 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 + V++ F ++I W L Sbjct: 255 HGSEILTKDVLEYVVFEKHISNEYGKWRL 283 >gi|161523748|ref|YP_001578760.1| import inner membrane translocase subunit Tim44 [Burkholderia multivorans ATCC 17616] gi|189351491|ref|YP_001947119.1| hypothetical protein BMULJ_02693 [Burkholderia multivorans ATCC 17616] gi|221200067|ref|ZP_03573110.1| Tim44 domain protein [Burkholderia multivorans CGD2M] gi|221206780|ref|ZP_03579792.1| Tim44 domain protein [Burkholderia multivorans CGD2] gi|160341177|gb|ABX14263.1| import inner membrane translocase subunit Tim44 [Burkholderia multivorans ATCC 17616] gi|189335513|dbj|BAG44583.1| putative membrane protein [Burkholderia multivorans ATCC 17616] gi|221173435|gb|EEE05870.1| Tim44 domain protein [Burkholderia multivorans CGD2] gi|221180306|gb|EEE12710.1| Tim44 domain protein [Burkholderia multivorans CGD2M] Length = 340 Score = 64.9 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 74/237 (31%), Gaps = 33/237 (13%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDE-RGIIT 61 F M S +I L A I +R + ++ +P +S S + Sbjct: 124 FAGMMSNLIVIALLAMIG---IWLVRKFMNRR----RPQEPAYSVGSAPSSSGGYAQSPS 176 Query: 62 LGKGKKKDNLDSINELFPIGTRL--------NKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 G S + R+ V V FD FL A+ S+ Sbjct: 177 FQPGSTSQYSGSGSNYANEAQRVFNGGAPAAGAAAAAPVQVPAGFDTDAFLRSAKVSFVR 236 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ +G + I + ++ + L +R + ++ +V + D +++ Sbjct: 237 LQAAWDQGNLADIREFTTPEMFAEIKIDLDSR--GNEPNQTDVVQL-DAELVALEDRGIE 293 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R G I S + ++W ++ W+L + Sbjct: 294 QSASVRFHG-LIRESANAAAEPFD----------EVWNLSKSGGQG---WLLAGIQQ 336 >gi|23502145|ref|NP_698272.1| hypothetical protein BR1269 [Brucella suis 1330] gi|163843532|ref|YP_001627936.1| import inner membrane translocase subunit Tim44 [Brucella suis ATCC 23445] gi|225852763|ref|YP_002732996.1| import inner membrane translocase subunit Tim44 [Brucella melitensis ATCC 23457] gi|254702005|ref|ZP_05163833.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 5 str. 513] gi|254704546|ref|ZP_05166374.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 3 str. 686] gi|254706558|ref|ZP_05168386.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M163/99/10] gi|254710332|ref|ZP_05172143.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis B2/94] gi|256031826|ref|ZP_05445440.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M292/94/1] gi|256044910|ref|ZP_05447814.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 1 str. Rev.1] gi|256160005|ref|ZP_05457714.1| import inner membrane translocase subunit Tim44 [Brucella ceti M490/95/1] gi|256255226|ref|ZP_05460762.1| import inner membrane translocase subunit Tim44 [Brucella ceti B1/94] gi|256263752|ref|ZP_05466284.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 2 str. 63/9] gi|256369690|ref|YP_003107200.1| Tim44 domain-containing protein [Brucella microti CCM 4915] gi|260168960|ref|ZP_05755771.1| Tim44 domain-containing protein [Brucella sp. F5/99] gi|260565489|ref|ZP_05835973.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 1 str. 16M] gi|261222423|ref|ZP_05936704.1| import inner membrane translocase subunit Tim44 [Brucella ceti B1/94] gi|261314017|ref|ZP_05953214.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M163/99/10] gi|261317896|ref|ZP_05957093.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis B2/94] gi|261752572|ref|ZP_05996281.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 5 str. 513] gi|261755230|ref|ZP_05998939.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 3 str. 686] gi|261758453|ref|ZP_06002162.1| import inner membrane translocase subunit Tim44 [Brucella sp. F5/99] gi|265988925|ref|ZP_06101482.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M292/94/1] gi|265991338|ref|ZP_06103895.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 1 str. Rev.1] gi|265998390|ref|ZP_06110947.1| import inner membrane translocase subunit Tim44 [Brucella ceti M490/95/1] gi|294852604|ref|ZP_06793277.1| import inner membrane translocase subunit Tim44 [Brucella sp. NVSL 07-0026] gi|23348108|gb|AAN30187.1| conserved hypothetical protein [Brucella suis 1330] gi|163674255|gb|ABY38366.1| import inner membrane translocase subunit Tim44 [Brucella suis ATCC 23445] gi|225641128|gb|ACO01042.1| import inner membrane translocase subunit Tim44 [Brucella melitensis ATCC 23457] gi|255999852|gb|ACU48251.1| Tim44 domain-containing protein [Brucella microti CCM 4915] gi|260151557|gb|EEW86651.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 1 str. 16M] gi|260921007|gb|EEX87660.1| import inner membrane translocase subunit Tim44 [Brucella ceti B1/94] gi|261297119|gb|EEY00616.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis B2/94] gi|261303043|gb|EEY06540.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M163/99/10] gi|261738437|gb|EEY26433.1| import inner membrane translocase subunit Tim44 [Brucella sp. F5/99] gi|261742325|gb|EEY30251.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 5 str. 513] gi|261744983|gb|EEY32909.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 3 str. 686] gi|262552858|gb|EEZ08848.1| import inner membrane translocase subunit Tim44 [Brucella ceti M490/95/1] gi|263002122|gb|EEZ14697.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 1 str. Rev.1] gi|263093810|gb|EEZ17815.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 2 str. 63/9] gi|264661122|gb|EEZ31383.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M292/94/1] gi|294821193|gb|EFG38192.1| import inner membrane translocase subunit Tim44 [Brucella sp. NVSL 07-0026] gi|326409290|gb|ADZ66355.1| import inner membrane translocase subunit Tim44 [Brucella melitensis M28] gi|326539001|gb|ADZ87216.1| import inner membrane translocase subunit Tim44 [Brucella melitensis M5-90] Length = 342 Score = 64.9 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 70/228 (30%), Gaps = 12/228 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M + + A I FV +R ++ + + S+ G+G Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQTAAAGAGHAGAQPFGASQPFGSAKSASGQG 182 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 S+N V + + V + D F I + A Sbjct: 183 SFSGRTPSVNPFETKQAAAPVVEDEPMDVGQE-DLDRF----EQMLVDIQGGYGREDYAA 237 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + KL + L S K + V + + A E N Y T+ + I Sbjct: 238 LRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAI 297 Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D+ ++ +P + +++WTF R + W L + + E Sbjct: 298 DVMVDRTSGAVVEGNPNEPVESVELWTFTRTDGGA---WQLAAIQGTE 342 >gi|254714328|ref|ZP_05176139.1| import inner membrane translocase subunit Tim44 [Brucella ceti M644/93/1] gi|254717227|ref|ZP_05179038.1| import inner membrane translocase subunit Tim44 [Brucella ceti M13/05/1] gi|261219045|ref|ZP_05933326.1| import inner membrane translocase subunit Tim44 [Brucella ceti M13/05/1] gi|261322105|ref|ZP_05961302.1| import inner membrane translocase subunit Tim44 [Brucella ceti M644/93/1] gi|260924134|gb|EEX90702.1| import inner membrane translocase subunit Tim44 [Brucella ceti M13/05/1] gi|261294795|gb|EEX98291.1| import inner membrane translocase subunit Tim44 [Brucella ceti M644/93/1] Length = 342 Score = 64.9 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 70/228 (30%), Gaps = 12/228 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M + + A I FV +R ++ + + S+ G+G Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQTAAAGAGHAGAQPFGASQPFGSAKSASGQG 182 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 S+N V + + V + D F I + A Sbjct: 183 SFSGRTPSVNPFETKQAAAPVVEDEPMDVGQE-DLDRF----EQMLVDIQGGYGREDYAA 237 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + KL + L S K + V + + A E N Y T+ + I Sbjct: 238 LRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAI 297 Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D+ ++ +P + +++WTF R + W L + + E Sbjct: 298 DVMVDRTSGAVVEGNPNEPVESVELWTFTRTDGGA---WQLAAIQGTE 342 >gi|161619220|ref|YP_001593107.1| import inner membrane translocase subunit Tim44 [Brucella canis ATCC 23365] gi|260566211|ref|ZP_05836681.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 4 str. 40] gi|161336031|gb|ABX62336.1| import inner membrane translocase subunit Tim44 [Brucella canis ATCC 23365] gi|260155729|gb|EEW90809.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 4 str. 40] Length = 342 Score = 64.9 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 70/228 (30%), Gaps = 12/228 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M + + A I FV +R ++ + + S+ G+G Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQTAAAGAGHAGAQPFGASQPFGSAKSASGQG 182 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 S+N V + + V + D F I + A Sbjct: 183 SFSGRTPSVNPFETKQAAAPVVEDEPMDVGQE-DLDRF----EQMLVDIQGGYGREDYAA 237 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + KL + L S K + V + + A E N Y T+ + I Sbjct: 238 LRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAI 297 Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D+ ++ +P + +++WTF R + W L + + E Sbjct: 298 DVMVDRTSGAVVEGNPNEPVESVELWTFTRTDGGA---WQLAAIQGTE 342 >gi|209542494|ref|YP_002274723.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter diazotrophicus PAl 5] gi|209530171|gb|ACI50108.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter diazotrophicus PAl 5] Length = 320 Score = 64.9 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 2/118 (1%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I ++ + + A++ + + FN LS S S V + + A E Sbjct: 204 IQAAWSQRNLPALQHMATPEMVGYFNAQLSDLASRGARNVVSDVRFEQGDLSEAWSENGF 263 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 Y T+ + + + D +I V ++WTFVR W+L + + G Sbjct: 264 DYATVAMRYSMVDITTDMTGRVIDGSSTERVMVTELWTFVRPTRGG--AWLLSAIQQG 319 >gi|134096015|ref|YP_001101090.1| hypothetical protein HEAR2855 [Herminiimonas arsenicoxydans] gi|133739918|emb|CAL62969.1| conserved hypothetical protein; putative exported protein [Herminiimonas arsenicoxydans] Length = 315 Score = 64.9 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 71/230 (30%), Gaps = 23/230 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQL---RGVLGKKTGNEKP-FSGFFSGKYVFSKRDERGIIT 61 M S ++ LFAF F+ ++ + G + GN++ F + Sbjct: 103 MISTMLMVGLFAFAAMFI-YRMIKAKSA-GAQAGNQRNGLQPSFPNNFSEKSSTPEIGSR 160 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 + + + + G+ + + DFD + F+ A+ + + ++ + Sbjct: 161 IEQPYGQPSALQSAAPLASGSAFGAGIDAANDLPADFDVESFVRNAKTYFIRLQAAWDKA 220 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTR-KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 V+ I + ++ + L R S SL GI + +I+ Sbjct: 221 DVNDIREFTTPEMFAELKAQLLERGASENHTDVISLEGI----FYGVETVGDDYIASIKF 276 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 L+ + W + + + WVL + Sbjct: 277 -----------TGLINEGAGAPTEPFSEAWNLSKPVH-GDGGWVLAGIQQ 314 >gi|15604299|ref|NP_220815.1| hypothetical protein RP434 [Rickettsia prowazekii str. Madrid E] gi|6226372|sp|O05965|Y434_RICPR RecName: Full=Uncharacterized protein RP434 gi|2073499|emb|CAA72444.1| hypothetical protein [Rickettsia prowazekii] gi|3860991|emb|CAA14891.1| unknown [Rickettsia prowazekii] gi|292572048|gb|ADE29963.1| hypothetical protein rpr22_CDS424 [Rickettsia prowazekii Rp22] Length = 212 Score = 64.9 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 57/144 (39%), Gaps = 20/144 (13%) Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145 + I FDP F+N A+ +++ I+++ ++ V + +L+D R ++F + Sbjct: 87 DGIEQIHKRLYSFDPVKFINNAKTAFQMIIEAAYKKDVKELSELIDKRYLEEFEKIIP-- 144 Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 S SS + K + N ++I + G+ ++ Sbjct: 145 -SYGDFFDSSAL---SAKYSEIYMFGNNIFIKLLFQGK----------NVVD----KIED 186 Query: 206 VIDIWTFVRNIPPSNPNWVLISTK 229 + + WTF RN +W L + + Sbjct: 187 LQEEWTFTRNANTKEVDWFLSNIE 210 >gi|284043595|ref|YP_003393935.1| import inner membrane translocase subunit Tim44 [Conexibacter woesei DSM 14684] gi|283947816|gb|ADB50560.1| import inner membrane translocase subunit Tim44 [Conexibacter woesei DSM 14684] Length = 216 Score = 64.5 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 58/163 (35%), Gaps = 4/163 (2%) Query: 58 GIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117 + + + P+ ++ + I FDP F A ++ A+ + Sbjct: 27 DVTVMANEPLAGGSTDAAVVSPLAP--DEGIALIRRADPAFDPAGFERRAEQAFLALGQA 84 Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 + + A L+ +++ ++ ++ K + +D + + +T Sbjct: 85 WQDRDREAARPLMSPGLHKSWSANVQMFVDEHKRNVLEGMRVDSLAPVKVVHGNAFDALT 144 Query: 178 IRIVGQFISASYD-KDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 +R +IS D + + +I+ D + +TF R++ Sbjct: 145 VRFTATWISYEVDERTDRVIAGD-RTPQSFTEFFTFQRSVDAR 186 >gi|258597316|ref|XP_001347936.2| mitochondrial inner membrane translocase subunit TIM44, putative [Plasmodium falciparum 3D7] gi|254832659|gb|AAN35849.2| mitochondrial inner membrane translocase subunit TIM44, putative [Plasmodium falciparum 3D7] Length = 470 Score = 64.5 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 56/131 (42%), Gaps = 10/131 (7%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA-----IVDSFFEGKVHAIEKLVDSRVYQ 136 T L +R++ + +F + + +E IV+S+ G + S + Sbjct: 309 TELAAALREMKMIDKNFKLSELM----YLFEYVISKHIVESYLIGDEETLRLHCGSSAFN 364 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINA-SIEENTVYITIRIVGQFISASYDKDNLL 195 N S++ RK + + ++++ + ++ A +EE++ + Q I+ +K++ + Sbjct: 365 SLNASITERKKKKVFLDTNVLIYKNHELKGAQRMEESSPWFIFTFHTQQINCLKNKNDEI 424 Query: 196 ISSDPEIFGKV 206 I + +V Sbjct: 425 IEGKIDDIREV 435 >gi|238028618|ref|YP_002912849.1| hypothetical protein bglu_1g30820 [Burkholderia glumae BGR1] gi|237877812|gb|ACR30145.1| Hypothetical protein bglu_1g30820 [Burkholderia glumae BGR1] Length = 348 Score = 64.5 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 69/244 (28%), Gaps = 37/244 (15%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I L AF ++ +L G++ ++P Sbjct: 122 FAGMMANLIVIALLAFAGIWLVRKLMN-RGRR---QEPAYAGSGASMNRGYDGAASGGYA 177 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVM----------------RDIVSVYTDFDPKDFLNE 106 + +V + V FD + F+ Sbjct: 178 AGNATYSSAPQPASSSNYANEAARVFGGGAAAGAVNDAVGSASAVPQVPAGFDTEAFVRN 237 Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN 166 A+ + + ++ +G + I + ++ + L +R + + ++ +V I D ++ Sbjct: 238 AKVYFVRLQAAWDQGNLADIREFTTPEMFAEVKIDLDSRGAGKN--QTDVVQI-DADLLG 294 Query: 167 ASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 + ++R G + ++W N W+L Sbjct: 295 VEQRGSLSEASVRFHG----MIRENPGAPAE-------PFEEVWNL---TKSGNEGWLLA 340 Query: 227 STKL 230 + Sbjct: 341 GIQQ 344 >gi|162147875|ref|YP_001602336.1| hypothetical protein GDI_2091 [Gluconacetobacter diazotrophicus PAl 5] gi|161786452|emb|CAP56034.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] Length = 324 Score = 64.5 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 2/118 (1%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I ++ + + A++ + + FN LS S S V + + A E Sbjct: 208 IQAAWSQRNLPALQHMATPEMVGYFNAQLSDLASRGARNVVSDVRFEQGDLSEAWSENGF 267 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 Y T+ + + + D +I V ++WTFVR W+L + + G Sbjct: 268 DYATVAMRYSMVDITTDMTGRVIDGSSTERVMVTELWTFVRPTRGG--AWLLSAIQQG 323 >gi|70943748|ref|XP_741884.1| mitochondrial import inner membrane translocase, [Plasmodium chabaudi chabaudi] gi|56520543|emb|CAH80928.1| mitochondrial import inner membrane translocase, putative [Plasmodium chabaudi chabaudi] Length = 367 Score = 64.5 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 53/131 (40%), Gaps = 10/131 (7%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA-----IVDSFFEGKVHAIEKLVDSRVYQ 136 T L +R + +F + + +E IV+S+ G + + Sbjct: 206 TELAAALRVMKMEDKNFKLSELM----YLFEFVISKHIVESYLIGDEETLRLHCGQAAFN 261 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINA-SIEENTVYITIRIVGQFISASYDKDNLL 195 N S++ RK + + ++++ D ++ A +EE++ + Q I+ +K++ + Sbjct: 262 SLNSSINERKKKKLFLDTNVLIYKDHELKGAQRMEESSPWFIFTFHTQQINCLKNKNDEI 321 Query: 196 ISSDPEIFGKV 206 + + +V Sbjct: 322 VEGKIDDIREV 332 >gi|317153060|ref|YP_004121108.1| import inner membrane translocase subunit Tim44 [Desulfovibrio aespoeensis Aspo-2] gi|316943311|gb|ADU62362.1| import inner membrane translocase subunit Tim44 [Desulfovibrio aespoeensis Aspo-2] Length = 258 Score = 64.5 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 51/151 (33%), Gaps = 14/151 (9%) Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 ++ P G V + V FD +FL A+ + +G + + + V Sbjct: 114 SKDAPEGGAPQAVRQSPAPVPGGFDEAEFLEGAKLFFSRFQQVSGQGDLDQLRGFLSDDV 173 Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNL 194 Y+ L+ ++ + + V + D +++ E +IT+ Q Sbjct: 174 YEQALAGLAAQQ----TIARTEVMLVDARLMERKSEGGRTWITVFYDAQLR--------K 221 Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 +S D + W F R + W L Sbjct: 222 GVSGDQPYQLRAA--WEFSRTDAEGSGLWTL 250 >gi|221056238|ref|XP_002259257.1| Mitochondrial import inner membrane translocase [Plasmodium knowlesi strain H] gi|193809328|emb|CAQ40030.1| Mitochondrial import inner membrane translocase,putative [Plasmodium knowlesi strain H] Length = 467 Score = 64.5 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 54/131 (41%), Gaps = 10/131 (7%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA-----IVDSFFEGKVHAIEKLVDSRVYQ 136 T L +R++ +F + + +E IV+S+ G + + Sbjct: 306 TELAAALREMKMYDQNFKLSELM----YLFEFVISKHIVESYLIGDEETLRVHCGQSAFN 361 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINA-SIEENTVYITIRIVGQFISASYDKDNLL 195 N S++ RK + + ++++ + ++ A +EE++ + Q I+ + ++ + Sbjct: 362 SLNASINERKKKKVYLDTNVLIYKNHELKGAQRMEESSPWFIFTFHTQQINCLKNANDEI 421 Query: 196 ISSDPEIFGKV 206 I + + +V Sbjct: 422 IEGNIDDIREV 432 >gi|229365490|dbj|BAH57996.1| hypothetical protein [Acetobacter lovaniensis] Length = 130 Score = 64.5 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 2/117 (1%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I ++ + + A++++ + FN+ LS S S V + A E Sbjct: 13 IQTAWNQQNIAAMQQMATPEMVSYFNEQLSALASQGARNVVSDVHFIQGDLAEAWRENGM 72 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + T+ + I + + +I + ++WTF R P W+L + + Sbjct: 73 DFATVAMRYSLIDLTTNAMGQVIQGSSTEPVNITELWTFTR--PSRGGRWLLSAIQQ 127 >gi|77461866|ref|YP_351373.1| import inner membrane translocase, subunit Tim44 [Pseudomonas fluorescens Pf0-1] gi|77385869|gb|ABA77382.1| putative exported protein [Pseudomonas fluorescens Pf0-1] Length = 292 Score = 64.1 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 75/220 (34%), Gaps = 32/220 (14%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 F IL+ A I F +F R + ++ + F+ +R+ G Sbjct: 103 FDILIMAVIAFVIF---RFIAARR----RKQQEQFAPAGAPMQREVFEQKPAAMGSIFG- 154 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 G+ R +++ F+ + FL AR+ ++A+ + ++ I + V Sbjct: 155 ----------GSAAPAAARPVINAPAWFNEQRFLEAARSHFQALQQHWDANEMDKIAEFV 204 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 ++++ R +S+ + +++ + T+ G ++ +D Sbjct: 205 TPQMFEFLKR---ERAELGDAFQSTYIDNLQVQLDGVDDRADKTIATLTFNGVSKTSRFD 261 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + + S W R + P W++ + Sbjct: 262 QQGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 290 >gi|68070005|ref|XP_676914.1| mitochondrial import inner membrane translocase, [Plasmodium berghei strain ANKA] gi|56496822|emb|CAH94869.1| mitochondrial import inner membrane translocase, putative [Plasmodium berghei] Length = 355 Score = 64.1 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 53/131 (40%), Gaps = 10/131 (7%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA-----IVDSFFEGKVHAIEKLVDSRVYQ 136 T L +R + +F + + +E IV+S+ G + + Sbjct: 194 TELAAALRIMKMDDKNFKLSELM----YLFEFVISKHIVESYLIGDEDTLRLHCGEAAFN 249 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINA-SIEENTVYITIRIVGQFISASYDKDNLL 195 N S++ RK + + ++++ + ++ A +EE++ + Q I+ +KD+ + Sbjct: 250 SLNSSINERKKKKLFLDTNVLIYKNHELKGAQRMEESSPWFIFTFHTQQINCLKNKDDEI 309 Query: 196 ISSDPEIFGKV 206 + + +V Sbjct: 310 VEGKIDDIREV 320 >gi|302036897|ref|YP_003797219.1| hypothetical protein NIDE1559 [Candidatus Nitrospira defluvii] gi|300604961|emb|CBK41294.1| conserved exported protein of unknown function [Candidatus Nitrospira defluvii] Length = 343 Score = 64.1 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 56/138 (40%), Gaps = 23/138 (16%) Query: 108 RNSYEA----IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163 + +++ I ++ + + A+ +LV + + F+ L+ + ++D+ Sbjct: 212 KAAFQQSLTDIQTAWGQQDLSALRRLVTPEMLEYFSTGLAE-----LTSQDQANRVEDVV 266 Query: 164 IINASIEENTVYITIRI-------VGQFISASYDK----DNLLISSDPEIFGKVIDIWTF 212 ++ A + E+ V T++ + + S K LI E + ++WTF Sbjct: 267 LLQAEVRESWVENTVQYATVSLHWSARDYTVSLSKAPGDAGYLIEGSAEKPIETTEVWTF 326 Query: 213 VRNIPPSNPNWVLISTKL 230 +R + W+L + + Sbjct: 327 MR---YQHGKWLLSAIQQ 341 >gi|323524735|ref|YP_004226888.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. CCGE1001] gi|323381737|gb|ADX53828.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. CCGE1001] Length = 330 Score = 64.1 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 74/219 (33%), Gaps = 22/219 (10%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 +++ A + +R +G+K +P S G + + Sbjct: 129 VIVIAVLAMIGIWLVRRFMGRKRDASQPAYAGHSPSL------NSGAAGYTQEPRYTAPP 182 Query: 73 SINELFPIGTRLNK-VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 + + L P G L + SV FD FL A+ + + ++ G + I + Sbjct: 183 TGSYLEPQGNPLTTPSVNATPSVPAGFDSDAFLRNAKVYFVRLQAAWDVGNIDDIREFTT 242 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 ++ + L++R + + ++ +V ++ ++ N + ++R Sbjct: 243 PEMFAEVRVDLASRGA--EKNQTDVVQLN-ADLLGVEERANEYFASVRFS---------- 289 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 L+ + +++W + W+L + Sbjct: 290 -GLIREAPGAAAEPFVEVWNLSK-ANRPGEGWLLAGIQQ 326 >gi|261856484|ref|YP_003263767.1| import inner membrane translocase subunit Tim44 [Halothiobacillus neapolitanus c2] gi|261836953|gb|ACX96720.1| import inner membrane translocase subunit Tim44 [Halothiobacillus neapolitanus c2] Length = 295 Score = 64.1 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 23/222 (10%), Positives = 70/222 (31%), Gaps = 36/222 (16%) Query: 10 DFLILLFAFITFFVFLQ-LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 DF+I+ + F+ ++ LR S + S T+ + Sbjct: 103 DFIIIALFALGAFMLIRALR----------------KSSQSAASPYARSTAGTMADQAPQ 146 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 + G+ + + F+ FL A+ + + ++ + +++ Sbjct: 147 PSSIGSFSNSSAGSAQA----PLPNAPAWFNEDSFLQGAKAHFTNLQRAWDANDLKTMQE 202 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 ++ + R + V + ++++ S E +++ ++ G Sbjct: 203 YFTPELFLELAR---ERARIGDENNVTEVQSLNAQLLDLSREGDSIVASVLFQG------ 253 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ D + +IW + +W+++ + Sbjct: 254 ------MVREDYGQPEPIAEIWHVRHTADSAQGDWLIVGIQQ 289 >gi|324517598|gb|ADY46868.1| Import inner membrane translocase subunit tim-44 [Ascaris suum] Length = 323 Score = 63.7 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 51/151 (33%), Gaps = 24/151 (15%) Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVH 124 + D I +F + +++V+ +I + FD ++L E I +++F G + Sbjct: 193 RGVTDRITSVFTTKSEVSEVLTEIAKIDPSFDKVEWLRFCER--EVIPNVLEAFIRGDLK 250 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNE-KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 ++ R Y + K S ++ I ++ Sbjct: 251 ILQDWCHERAYNALAAVVKEYKKVNFSTADSRVIDISKVE------------------AF 292 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVR 214 I+ + + ++ D +V +W R Sbjct: 293 MINVVKNLEGKVVQGDENNPVRVHHVWVMCR 323 >gi|193078111|gb|ABO13052.2| putative membrane protein [Acinetobacter baumannii ATCC 17978] Length = 326 Score = 63.7 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 70/226 (30%), Gaps = 34/226 (15%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFS--GFFSGKYVFSKRDERGIITLGKGKKKDN 70 +LL A + FFVF +K G++K + ++ R G + Sbjct: 128 VLLAAAVAFFVF--------RKLGSKKKLAANNPYAPNNGGQNPFGRSAAPTNTGDNTNI 179 Query: 71 LDS-----INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 P G+ + +P FL AR + I + Sbjct: 180 FGQSVGGGAATQAPFGSATTNSGNQLPD---GSEPASFLRVARQRFNHIQSINSASNIEE 236 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 I + + +Y + + + + + ++ M + +A+ E +++R Sbjct: 237 IRRYLTPELYNSMYNDIMENQDQDV---AEFSNLNAMVVDSAT-ENGQYIVSVRF----- 287 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + + +IW FV+ + +WV+ + Sbjct: 288 ------TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 326 >gi|169795016|ref|YP_001712809.1| hypothetical protein ABAYE0855 [Acinetobacter baumannii AYE] gi|184159199|ref|YP_001847538.1| hypothetical protein ACICU_02879 [Acinetobacter baumannii ACICU] gi|213158321|ref|YP_002320372.1| hypothetical protein AB57_3049 [Acinetobacter baumannii AB0057] gi|260556495|ref|ZP_05828713.1| conserved hypothetical protein [Acinetobacter baumannii ATCC 19606] gi|301345393|ref|ZP_07226134.1| hypothetical protein AbauAB0_04094 [Acinetobacter baumannii AB056] gi|301511593|ref|ZP_07236830.1| hypothetical protein AbauAB05_08443 [Acinetobacter baumannii AB058] gi|301594787|ref|ZP_07239795.1| hypothetical protein AbauAB059_03222 [Acinetobacter baumannii AB059] gi|332854286|ref|ZP_08435286.1| hypothetical protein HMPREF0021_02869 [Acinetobacter baumannii 6013150] gi|332865662|ref|ZP_08436488.1| hypothetical protein HMPREF0020_00093 [Acinetobacter baumannii 6013113] gi|332876029|ref|ZP_08443815.1| hypothetical protein HMPREF0022_03458 [Acinetobacter baumannii 6014059] gi|169147943|emb|CAM85806.1| conserved hypothetical protein; putative exported protein [Acinetobacter baumannii AYE] gi|183210793|gb|ACC58191.1| uncharacterized protein conserved in bacteria [Acinetobacter baumannii ACICU] gi|213057481|gb|ACJ42383.1| conserved hypothetical protein [Acinetobacter baumannii AB0057] gi|260409754|gb|EEX03054.1| conserved hypothetical protein [Acinetobacter baumannii ATCC 19606] gi|323519143|gb|ADX93524.1| hypothetical protein ABTW07_3101 [Acinetobacter baumannii TCDC-AB0715] gi|332728102|gb|EGJ59491.1| hypothetical protein HMPREF0021_02869 [Acinetobacter baumannii 6013150] gi|332735183|gb|EGJ66263.1| hypothetical protein HMPREF0020_00093 [Acinetobacter baumannii 6013113] gi|332735895|gb|EGJ66936.1| hypothetical protein HMPREF0022_03458 [Acinetobacter baumannii 6014059] Length = 325 Score = 63.7 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 70/226 (30%), Gaps = 34/226 (15%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFS--GFFSGKYVFSKRDERGIITLGKGKKKDN 70 +LL A + FFVF +K G++K + ++ R G + Sbjct: 127 VLLAAAVAFFVF--------RKLGSKKKLAANNPYAPNNGGQNPFGRSAAPTNTGDNTNI 178 Query: 71 LDS-----INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 P G+ + +P FL AR + I + Sbjct: 179 FGQSVGGGAATQAPFGSATTNSGNQLPD---GSEPASFLRVARQRFNHIQSINSASNIEE 235 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 I + + +Y + + + + + ++ M + +A+ E +++R Sbjct: 236 IRRYLTPELYNSMYNDIMENQDQDV---AEFSNLNAMVVDSAT-ENGQYIVSVRF----- 286 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + + +IW FV+ + +WV+ + Sbjct: 287 ------TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 325 >gi|92118080|ref|YP_577809.1| import inner membrane translocase, subunit Tim44 [Nitrobacter hamburgensis X14] gi|91800974|gb|ABE63349.1| import inner membrane translocase, subunit Tim44 [Nitrobacter hamburgensis X14] Length = 312 Score = 63.7 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 9/127 (7%) Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164 ++E I ++ V+ + L + F + L + K S V + + Sbjct: 189 EAFERLLGEIQTAWSNEDVNTLHTLATPEMVSYFTEDLRANDARGVVNKVSDVKLLQGDL 248 Query: 165 INASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223 A E T Y T+ + I + ++ ++ + +V D+WTF R W Sbjct: 249 AEAWREGTTDYATVALRYSLIDKTTERASGRVVEGS-DQPQEVTDVWTFARLGGGK---W 304 Query: 224 VLISTKL 230 L + + Sbjct: 305 ELSAIQQ 311 >gi|126642670|ref|YP_001085654.1| hypothetical protein A1S_2635 [Acinetobacter baumannii ATCC 17978] Length = 291 Score = 63.7 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 70/226 (30%), Gaps = 34/226 (15%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFS--GFFSGKYVFSKRDERGIITLGKGKKKDN 70 +LL A + FFVF +K G++K + ++ R G + Sbjct: 93 VLLAAAVAFFVF--------RKLGSKKKLAANNPYAPNNGGQNPFGRSAAPTNTGDNTNI 144 Query: 71 LDS-----INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 P G+ + +P FL AR + I + Sbjct: 145 FGQSVGGGAATQAPFGSATTNSGNQLPD---GSEPASFLRVARQRFNHIQSINSASNIEE 201 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 I + + +Y + + + + + ++ M + +A+ E +++R Sbjct: 202 IRRYLTPELYNSMYNDIMENQDQDV---AEFSNLNAMVVDSAT-ENGQYIVSVRF----- 252 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + + +IW FV+ + +WV+ + Sbjct: 253 ------TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 291 >gi|290983241|ref|XP_002674337.1| predicted protein [Naegleria gruberi] gi|284087927|gb|EFC41593.1| predicted protein [Naegleria gruberi] Length = 520 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 59/180 (32%), Gaps = 10/180 (5%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA- 113 D R K K++++ + M FD L + E Sbjct: 334 DARTAQEKVKKSKEEDIPDTEADISSTSENALAMGAFKKRDPRFDLDLLL----VTMETL 389 Query: 114 ----IVDSFFEGKVHAIEKLVDSRVY-QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS 168 I+ ++F H I+K V Y Q F + R + + ++ ++D+ + Sbjct: 390 IIPEIMSAYFNDDAHTIKKFVSESCYRQVFFPRIQERVHTKIKYDAKILHVEDVMLYTTR 449 Query: 169 IEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + + I Q+I ++ ++ P+ K +W ++ +W + Sbjct: 450 YDAGNPALVISCAVQYIHCMKNEAGEIVEGGPKDIRKENQMWILKQDESQETDDWYVSEV 509 >gi|170743208|ref|YP_001771863.1| import inner membrane translocase subunit Tim44 [Methylobacterium sp. 4-46] gi|168197482|gb|ACA19429.1| import inner membrane translocase subunit Tim44 [Methylobacterium sp. 4-46] Length = 316 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 61/184 (33%), Gaps = 18/184 (9%) Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 +R + G + N + +G + P DF ++E Sbjct: 143 RRRQAEPAMAGGYARSGPPPGPNPMTGLGGGGARPAGPPQRDQVGISPADF-----EAFE 197 Query: 113 ----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS 168 I ++ V + +L + F + L + + + V + + A Sbjct: 198 RSLTQIQLAYGAEDVGTLRRLATPEMAGYFTEELQANAARGVINRIADVKLLQGDLSEAW 257 Query: 169 IEENTVYITI--RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 E T Y T+ R + ++ ++ + DPE +IWTF R+ W+L Sbjct: 258 REGPTDYATVAMRYALRDVTVERGSGRVVANGDPEAV----EIWTFRRDRGGP---WLLS 310 Query: 227 STKL 230 + + Sbjct: 311 AIQQ 314 >gi|332374642|gb|AEE62462.1| unknown [Dendroctonus ponderosae] Length = 325 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 65/184 (35%), Gaps = 17/184 (9%) Query: 48 KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107 YV + D + +G K++ + +R +R I DFD +F A Sbjct: 104 PYVPPEGDGKVSPISAQGAKQNLV-----FLEKKSRTMLAVRKIRQYDEDFDGPEFCKSA 158 Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV-GIDDMKIIN 166 + Y + + + + R Y + ++ K ++ + I+ +I++ Sbjct: 159 TDIYIKMHECMAANDKETLINYITERAYPEVVHNID-----NKTLRWKYLKDIELPRIVH 213 Query: 167 ASI------EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN 220 A + +T+R Q A YD+ L+ + V++ F +++ Sbjct: 214 ARNTEVITPDNVFAQVTVRFHTQQTLAIYDRFGRLMHGSEILAKDVLEYVVFEKHLSNQY 273 Query: 221 PNWV 224 W Sbjct: 274 GLWR 277 >gi|167561581|ref|ZP_02354497.1| Tim44-like domain family protein [Burkholderia oklahomensis EO147] Length = 324 Score = 63.4 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 69/237 (29%), Gaps = 30/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I L A ++ + + G ++P + + Sbjct: 105 FASMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPSQSRGGYGQDAGVPR 160 Query: 63 GKGKKKDNLDSINELFPIGTRL---------NKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 S + R+ +V FD + FL A+ + Sbjct: 161 QAASNDAFPGSGSAYAGEAQRMFGGAAAATTAAAAAAAPAVPAGFDAEAFLRNAKVYFVR 220 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ EG + I + ++ + L R + ++ +V + D +++ Sbjct: 221 LQAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGE 277 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + ++R G + ++W + + W+L + Sbjct: 278 HFASVRFHG----LIREAQGASAE-------PFEEVWNLSK---SGSQGWLLAGIQQ 320 >gi|195112778|ref|XP_002000949.1| GI22249 [Drosophila mojavensis] gi|193917543|gb|EDW16410.1| GI22249 [Drosophila mojavensis] Length = 362 Score = 63.4 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 80/209 (38%), Gaps = 21/209 (10%) Query: 28 RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83 RGVL + E+PF +G YV + D + I G K+ E ++ Sbjct: 87 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISSSGAKQKL-----EFLEKKSK 141 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +R I S +F DF +A+ Y A + + I + V R Y + ++ Sbjct: 142 SLMAIRKIRSYEENFSTDDFGAQAQEIYIAAHTHMAAKEKYKIREFVSERCYPEMMHNVK 201 Query: 144 TRKSNEKNVKSSLV-GIDDMKIINASI------EENTVYITIRIVGQFISASYDKDNLLI 196 K + + ++ ++++A + E +T+R Q + A YD+ L+ Sbjct: 202 D-----KTIHWRFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHTQQMLAIYDRFGRLM 256 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 + V++ F ++I W L Sbjct: 257 HGSEILSKDVLEYVVFEKHISNEYGKWRL 285 >gi|296115092|ref|ZP_06833734.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter hansenii ATCC 23769] gi|295978429|gb|EFG85165.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter hansenii ATCC 23769] Length = 325 Score = 63.4 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 43/117 (36%), Gaps = 2/117 (1%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ + + A++ + + F+ L+ S S V ++ + + E Sbjct: 208 VQAAWSQQNLGALQHMATPEMVSYFSHQLTDLASRGARNVVSDVRFENGDLTESWQENGM 267 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 Y T+ + I + D +I V ++WTF R W++ + + Sbjct: 268 DYATVAMRYSLIDMTTDMTGHVIDGSSTERTVVTELWTFER--SSRGGTWLVSAIQQ 322 >gi|163854788|ref|YP_001629086.1| hypothetical protein Bpet0483 [Bordetella petrii DSM 12804] gi|163258516|emb|CAP40815.1| conserved hypothetical protein [Bordetella petrii] Length = 332 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 67/221 (30%), Gaps = 20/221 (9%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 +++FA + F+ +LRGV G + + + ++ Sbjct: 125 LIGLVVFAVL--FIVRRLRGV-GPRHATQGAYGAARQEHAGQGQQPMWRQSAGASAGSAA 181 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + + P + + DF+ +FL +A+ + I + G + + Sbjct: 182 SPAAAAAPAPAAGLPAADDDNNWYIPGDFNTTEFLKKAKEQFVQIQAIWDSGDTDRLREF 241 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + + + L+ R + + L+ +++ + ++R G Sbjct: 242 LTDDLIAELKQQLAERGAAPNQTEVVLLN---AELLGIETVSDGHLASVRFSGMLR---- 294 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + + +IW P W+L + Sbjct: 295 -------EAPGTEAFRFEEIWNL---FKPQQGGWLLAGIQQ 325 >gi|257094387|ref|YP_003168028.1| import inner membrane translocase subunit Tim44 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046911|gb|ACV36099.1| import inner membrane translocase subunit Tim44 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 300 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 31/225 (13%), Positives = 76/225 (33%), Gaps = 34/225 (15%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 +L+ A + + +R ++ ++P G + G + + Sbjct: 108 MIGLLVVA-VMVAIGFVMR----RRAAAQQPALAGAGGFQYAAPDALNGGMARVEAGPSM 162 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + E G + DFD + F+ A+ S+ + + G + I + Sbjct: 163 PAGTSTEAVTAGGNIPA----------DFDVEGFVRNAKISFIRLQAANDAGNLDDIREF 212 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 ++ + +++ R ++ +V I D ++++ + EE+ +++R Sbjct: 213 TTPEMFAEVRMNIADRGPV--AQETDVVSI-DAQVLDVAEEESRYLVSVRF--------- 260 Query: 190 DKDNLLISSDPEIFGKVIDIWTF--VRNIPPSNPNWVLISTKLGE 232 L+ V +IW R+ WVL + + Sbjct: 261 --TGLIREDKAAAPEPVDEIWHLIKPRDGKSG---WVLAGIQQVQ 300 >gi|328767960|gb|EGF78008.1| hypothetical protein BATDEDRAFT_91206 [Batrachochytrium dendrobatidis JAM81] Length = 264 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 58/148 (39%), Gaps = 11/148 (7%) Query: 90 DIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST----- 144 + + + P+ F EA Y A+ ++ G + V + + + Sbjct: 107 QVKTTTKGWKPRAFAIEAEKLYIAMNKAYARGDRAELSNCVTDGMMSALSPEIKAMQRIG 166 Query: 145 ---RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201 SN + + +V + K+ + + IT+R+ + A+Y KD+ LI+ +P+ Sbjct: 167 KFVWDSNGSDRRPQVVHLATAKVATETGDMRLSQITVRVNVRQSMATY-KDDTLIAGNPD 225 Query: 202 IFGKVIDIWTFVR--NIPPSNPNWVLIS 227 + +++ + + +N W + Sbjct: 226 TYTSIVEHIVMEKWLDGKWANRPWKIAG 253 >gi|195444564|ref|XP_002069925.1| GK11306 [Drosophila willistoni] gi|194166010|gb|EDW80911.1| GK11306 [Drosophila willistoni] Length = 337 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 79/209 (37%), Gaps = 21/209 (10%) Query: 28 RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83 RGVL + E+PF +G YV + D + + G K+ E ++ Sbjct: 78 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSLISSSGAKQKL-----EFLEKKSK 132 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +R I S F +F + A+ Y A + + I + V R Y + ++ Sbjct: 133 SLMAVRKIRSYEESFSTDEFGDHAQEIYIAAHTHMAAREKYKIREFVSERCYPEMMHNVK 192 Query: 144 TRKSNEKNVKSSLV-GIDDMKIINASI------EENTVYITIRIVGQFISASYDKDNLLI 196 K + + ++ ++++A + E +T+R Q + A YD+ L+ Sbjct: 193 D-----KTIHWRFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHTQQMLAIYDRFGRLM 247 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 + V++ F ++I W L Sbjct: 248 HGSEILTKDVLEYVVFEKHISNEYGKWRL 276 >gi|82706055|ref|XP_727222.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23482963|gb|EAA18787.1| Drosophila melanogaster CG11779 gene product, putative [Plasmodium yoelii yoelii] Length = 443 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 53/131 (40%), Gaps = 10/131 (7%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA-----IVDSFFEGKVHAIEKLVDSRVYQ 136 T L +R + +F + + +E IV+S+ G + + Sbjct: 282 TELAAALRVMKMDDKNFKLSELM----YLFEYVISKHIVESYLIGDEDTLRLHCGEAAFN 337 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINA-SIEENTVYITIRIVGQFISASYDKDNLL 195 N S++ RK + + ++++ + ++ A +EE++ + Q I+ +KD+ + Sbjct: 338 SLNLSITERKKKKLFLDTNVLIYKNHELKGAQRMEESSPWFIFTFHTQQINCLKNKDDEI 397 Query: 196 ISSDPEIFGKV 206 I + +V Sbjct: 398 IEGKIDDIREV 408 >gi|256113826|ref|ZP_05454619.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 3 str. Ether] gi|265995175|ref|ZP_06107732.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 3 str. Ether] gi|262766288|gb|EEZ12077.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 3 str. Ether] Length = 342 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 68/221 (30%), Gaps = 9/221 (4%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL A I V +R ++ + + S+ G+G Sbjct: 130 ILQVAVIALIVMFVMRMFANRRQTAAAGAGHAGAQPFGASQPFGSAKSASGQGSFSGRTP 189 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 S+N V + + V + D F I + A+ KL Sbjct: 190 SVNPFETKQAAAPVVEDEPMDVGQE-DLDRF----EQMLVDIQGGYGREDYAALRKLTTP 244 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 + L S K + V + + A E N Y T+ + I D+ Sbjct: 245 EAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAIDVMVDRT 304 Query: 193 -NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ++ +P + +++WTF R + W L + + E Sbjct: 305 SGAVVEGNPNEPVESVELWTFTRTDGGA---WQLAAIQGTE 342 >gi|47214080|emb|CAF95337.1| unnamed protein product [Tetraodon nigroviridis] Length = 223 Score = 62.6 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 18/161 (11%) Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF---EGKVHAIEKLVD 131 E +R I ++F KDF A + E +++ + L+ Sbjct: 28 TEQIRQSAASQLAIRKIKDHDSEFSTKDF---AEQAQEIFIEAHNCLTNFNKEKLHSLLT 84 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLV-GIDDMKIINASIEENT------VYITIRIVGQF 184 R Y + TR + K ++ V ++ K+++A + +T+R+ + Sbjct: 85 ERCYPE-----MTRGNRYKTIRWRFVESLELPKVVHARCPDMVSKGNLYGQVTVRMHSRQ 139 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 A YD+ L+ + E V++ R++ W L Sbjct: 140 TLAIYDRFGRLMLGNEEQPKDVLEYLVLERHLVNPYGRWRL 180 >gi|167568817|ref|ZP_02361691.1| Tim44-like domain family protein [Burkholderia oklahomensis C6786] Length = 325 Score = 62.6 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 69/237 (29%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I L A +R + ++ ++P + + Sbjct: 105 FASMMANVIVIALLAMAG---IWLVRKFMNRRGAQQQPAYAGGQPSQSRGGYGQDAGVPR 161 Query: 63 GKGKKKDNLDSINELFPIGTRL---------NKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 S + R+ +V FD + FL A+ + Sbjct: 162 QAASNDAFPGSGSAYAGEAQRMFGGAAAATTAAAAAAAPAVPAGFDTEAFLRNAKVYFVR 221 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ EG + I + ++ + L R + ++ +V + D +++ Sbjct: 222 LQAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGE 278 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + ++R G + ++W + + W+L + Sbjct: 279 HFASVRFHG----LIREAQGASAE-------PFEEVWNLSK---SGSQGWLLAGIQQ 321 >gi|300692535|ref|YP_003753530.1| hypothetical protein RPSI07_2910 [Ralstonia solanacearum PSI07] gi|299079595|emb|CBJ52273.1| conserved membrane protein of unknown function [Ralstonia solanacearum PSI07] Length = 345 Score = 62.6 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 35/249 (14%), Positives = 76/249 (30%), Gaps = 44/249 (17%) Query: 8 SGDFLILLFAFITFFVFLQLRGV-------------LGKKTGNEKPFSGFFSGKYVFSKR 54 S LI + AF+ ++ +LRG LG G+ +P+ + Sbjct: 113 SNLILIAIIAFVVMWIIRKLRGSRPQEPAYATGGPSLG---GDREPYVPSPAVPAAQPAA 169 Query: 55 DERGIITLGKGKKKDNLDSINELF--------PIGTRLNKVMRDIVSVYT-----DFDPK 101 I G L + + P N + S DFD + Sbjct: 170 PVASSIDTGSTGSTSGLGAGAQTAAQAWSLGGPAAPTANAPVAAPASQQPWGVPADFDTQ 229 Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDD 161 FL A+ + + ++ ++ I + ++ + L+ R + + +V + + Sbjct: 230 AFLRNAKVYFIRLQAAWDTANLNDIREFTTPEMFAEIKMDLADRGTAPNK--TDVVSV-E 286 Query: 162 MKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP 221 +++ ++R ++ ++W + I S Sbjct: 287 AELLGIETSPTEYLASVRF-----------AGMIREEANAPAQPFAEVWNLTKPIQGSG- 334 Query: 222 NWVLISTKL 230 WVL + Sbjct: 335 GWVLAGIQQ 343 >gi|254470189|ref|ZP_05083593.1| import inner membrane translocase, subunit Tim44 [Pseudovibrio sp. JE062] gi|211960500|gb|EEA95696.1| import inner membrane translocase, subunit Tim44 [Pseudovibrio sp. JE062] Length = 351 Score = 62.6 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 68/199 (34%), Gaps = 26/199 (13%) Query: 40 PFSGFFSGKYVFSKRDERGIITLGK--GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 PF+ +G +R I G + + +I D Sbjct: 171 PFTFNDAGAQDAPRRSGSSGIPNTGFGGGQAPQFEEQPVFSTEADD------EIGLTADD 224 Query: 98 FDPKDFLNEARNSYEAIVD----SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153 FD ++EA++ ++ I ++ + F + L SN + Sbjct: 225 FD----------AFEALLTTVWTAYGSEDYGKIREIATPEIMGYFAEELGKAASNGLINE 274 Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTF 212 + + + A E + Y ++ + + I ++ N ++ + ++ + I+IWTF Sbjct: 275 VRDIKLLQGDLTEAWREGDKDYASVAMRYESIDVMRERATNKVVEGNADVPEERIEIWTF 334 Query: 213 VRNIPPSNPNWVLISTKLG 231 +R NW L + + Sbjct: 335 IRGAGE---NWQLSAIQQA 350 >gi|316932842|ref|YP_004107824.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris DX-1] gi|315600556|gb|ADU43091.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris DX-1] Length = 358 Score = 62.6 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 59/190 (31%), Gaps = 22/190 (11%) Query: 57 RGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-------- 108 R G ++++ GT + F F AR Sbjct: 173 RPDGADATGPMGRATHAMDQSAAQGTAQGTAQASQSGYRSGF---GFGGGARNDRPLEIK 229 Query: 109 ----NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160 ++E + ++ + + +L + F L K+ K S V + Sbjct: 230 PDDYEAFERLLGEVQAAWSNEDIDRLRELATPEMASYFAKDLEENKAANDINKVSDVKLL 289 Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN 220 + A E T + T+ + + + ++ + + E + +IWTF R S Sbjct: 290 QGDLAEAWTEGETDFATVAMRFSLVDKTLERGTDRLVAGSETPIEATEIWTFTRRPGAS- 348 Query: 221 PNWVLISTKL 230 W L + + Sbjct: 349 --WELAAIQQ 356 >gi|156086672|ref|XP_001610745.1| mitochondrial inner membrane translocase subunit TIM44 [Babesia bovis T2Bo] gi|154797998|gb|EDO07177.1| mitochondrial inner membrane translocase subunit TIM44, putative [Babesia bovis] Length = 395 Score = 62.6 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 54/127 (42%), Gaps = 2/127 (1%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAIEKLVDSRVYQDFND 140 + L K ++++ + + FD +F+ + IV + +G ++E + N Sbjct: 234 STLAKAVKEMKRLDSSFDLPEFIESVEHVVAPHIVQCYLDGDSKSLEAHCGELAFNVLNA 293 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINA-SIEENTVYITIRIVGQFISASYDKDNLLISSD 199 S+ R + + +++ + D+++ ++EE + Q I+ D +++ + Sbjct: 294 SIRERDLQKLYLDPNILILKDVELKGGMTMEEGYPWFIFNFKTQQINCLRDSRGHVVAGE 353 Query: 200 PEIFGKV 206 + +V Sbjct: 354 IDDIRQV 360 >gi|262373164|ref|ZP_06066443.1| conserved hypothetical protein [Acinetobacter junii SH205] gi|262313189|gb|EEY94274.1| conserved hypothetical protein [Acinetobacter junii SH205] Length = 322 Score = 62.6 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 72/228 (31%), Gaps = 33/228 (14%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEK------PFSGFFSGKYVFSKRDERGIITLGKGK 66 +LL A + FFVF +K G +K P++ +G+ F + Sbjct: 119 VLLAAAVAFFVF--------RKFGAKKKLATANPYAPNNNGQNNFGRPVSPQPTMRQTAG 170 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYT---DFDPKDFLNEARNSYEAIVDSFFEGKV 123 N+ + + T+ + S +P FL AR + I V Sbjct: 171 DNTNIFGQSVGGGVATQAPFGGASMSSGNQLPDGTEPAAFLRIARQRFNHIQSVNSASNV 230 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 I + + +Y + + + + ++ + ++ E +++R Sbjct: 231 EEIRRYLTPELYNSMYSDIMANQDQDV---AEFSNLN-AMVAESTTENGQYVVSVRF--- 283 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + + +IW FV+ + +WV+ + Sbjct: 284 --------TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 322 >gi|307543929|ref|YP_003896408.1| hypothetical protein HELO_1340 [Halomonas elongata DSM 2581] gi|307215953|emb|CBV41223.1| hypothetical protein HELO_1340 [Halomonas elongata DSM 2581] Length = 272 Score = 62.6 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 21/172 (12%), Positives = 51/172 (29%), Gaps = 18/172 (10%) Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + G + + I FD + FL A+ + + ++ Sbjct: 115 AMAGANGTTSQASREADAQAFQSSASLGGTTHIGDEPAWFDRERFLGGAKEHFMTLQRAW 174 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 I+ V +Y R+ + N ++ +V + ++ + + T+ Sbjct: 175 DNNDFTLIQDYVTPELYNLLRQ---EREQHPANNRTEIVRLI-AELGSVRETDQQAEATV 230 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G D++ + + W VR++ P W + + Sbjct: 231 LFHG-----ILDENG--------AQNEFNETWHLVRDLRDGAP-WYVQGIEQ 268 >gi|156098709|ref|XP_001615370.1| mitochondrial import inner membrane translocase [Plasmodium vivax SaI-1] gi|148804244|gb|EDL45643.1| mitochondrial import inner membrane translocase, putative [Plasmodium vivax] Length = 461 Score = 62.6 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 53/131 (40%), Gaps = 10/131 (7%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA-----IVDSFFEGKVHAIEKLVDSRVYQ 136 T L +R++ +F + + +E IV+S+ G + + Sbjct: 300 TELAAALREMKMQDKNFKLCELM----YLFEFVISKHIVESYLIGDEETLRLHCGQSAFN 355 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINA-SIEENTVYITIRIVGQFISASYDKDNLL 195 N S++ RK + + ++++ + ++ A +EE++ + Q I+ + ++ + Sbjct: 356 SLNASINERKKKKVYLDTNVLIYKNHELKGAQRMEESSPWFIFTFHTQQINCLKNANDEI 415 Query: 196 ISSDPEIFGKV 206 + + +V Sbjct: 416 VEGHIDDIREV 426 >gi|312385733|gb|EFR30159.1| hypothetical protein AND_00421 [Anopheles darlingi] Length = 340 Score = 62.2 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 82/209 (39%), Gaps = 21/209 (10%) Query: 28 RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83 RG+L + E+PF +G YV + D R +G K+ E T+ Sbjct: 86 RGILPPRPWLERPFYISCTGGVFEPYVPPEGDGRMSAISREGAKQAI-----EQLEKKTK 140 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +R I S DFD +DF +A++ Y + E + + ++V R Y + +++ Sbjct: 141 SMMAIRKIRSYDEDFDARDFATQAQDIYIQAHQTMCEKNKYKLREIVTERAYPELMHNVA 200 Query: 144 TRKSNEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLI 196 K ++ + + + + +EN +T+R Q + A YD+ L+ Sbjct: 201 D-----KTIRWQFIKSLEPPRVVHARCTDVITKENIFAQVTVRFHSQQLLAIYDRFGRLM 255 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 I ++ F +++ W L Sbjct: 256 HGSETIEKDCLEYVVFEKHLANEYGVWRL 284 >gi|297538333|ref|YP_003674102.1| import inner membrane translocase subunit Tim44 [Methylotenera sp. 301] gi|297257680|gb|ADI29525.1| import inner membrane translocase subunit Tim44 [Methylotenera sp. 301] Length = 290 Score = 62.2 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 66/218 (30%), Gaps = 27/218 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 +L A + V + L +KP + + + Sbjct: 96 TILMALLAAGVVMFLIS------KFKKPQPANNFNPSTVMQYAGESAYNAQDSQSQARSG 149 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + +N ++ +F F+ A+ S+ + + + I + Sbjct: 150 ASGFGANAANSINS------NIPPNFPVDSFIRSAKASFIRLQAANDNKDSNDIREYTTP 203 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 V+ + + R + K+ ++ I +++ + + ++R GQ Sbjct: 204 EVFAEITMQMQERGNA--VQKTEVIAIQ-AELLEVNDDAVFSVASVRFTGQL-------- 252 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S + + ++W +++ N W+L + Sbjct: 253 ----SENNGTPENIDEVWHIQKHLHDENAKWLLAGIQQ 286 >gi|323137415|ref|ZP_08072493.1| import inner membrane translocase subunit Tim44 [Methylocystis sp. ATCC 49242] gi|322397402|gb|EFX99925.1| import inner membrane translocase subunit Tim44 [Methylocystis sp. ATCC 49242] Length = 336 Score = 62.2 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 29/222 (13%), Positives = 62/222 (27%), Gaps = 18/222 (8%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 +++F F++ R P F G KG Sbjct: 131 IALVVFLARMAFMWWANRN---------APAGAGSRPGAPFGSMFTGGAPFGAKGPGAGG 181 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + + + DF+ + L + ++ + A+ + Sbjct: 182 FRAAGFGSGAAPQGARA-TPLKVQAEDFNAFERLLGETQA------AYSREDLGALRMMS 234 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 + F+D L + + S V + + A E + Y T+ + D Sbjct: 235 TPEMASYFDDELDENRRKGVVNRVSDVKLLQGDLSEAWREGSDEYATVAMRFSLNDVMED 294 Query: 191 KD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + P + +++WTF R W L + + Sbjct: 295 RATGKPTPGSPGK-SEAVEVWTFRRPAGAGPQEWKLSAIQQA 335 >gi|159185868|ref|NP_356915.2| hypothetical protein Atu3705 [Agrobacterium tumefaciens str. C58] gi|159141002|gb|AAK89700.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 215 Score = 62.2 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 3/119 (2%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ + KL + LS ++ V + + A EE Sbjct: 98 VQSAYGAEDYGTLRKLTTPEAMSYLAEELSDNATSGVKNDVRDVTLLQGDVAEAWHEEGQ 157 Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 Y T+ + I D+ +I D + +++WTFVR NW + + + Sbjct: 158 DYATVAMRYSAIDIMRDRTSGKVIEGDEHKPSEAVEMWTFVRRPGND--NWQVAAIQAA 214 >gi|256083996|ref|XP_002578220.1| mitochondrial 39S ribosomal protein L45 [Schistosoma mansoni] gi|238663583|emb|CAZ34458.1| putative mitochondrial 39S ribosomal protein L45 [Schistosoma mansoni] Length = 327 Score = 62.2 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 16/150 (10%) Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEA---IVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 K + + S F+ K F EA N Y ++ ++ + + + +LV + D L Sbjct: 126 KDLSLLKSHEPSFNSKRFTIEAENIYVEAHDLLQNYRQNE-SRLFELVTEKALVDMTADL 184 Query: 143 STRKSNEKNVKSSLVG-IDDMKIINAS-----IEENT-VYITIRIVGQFISASYDKDNLL 195 R ++ VG I+ +++ + N +T+R Q I + Y++ L Sbjct: 185 KLR-----TLQWKFVGNIEPPRVVQIRCNELLSKGNVYAQVTVRFYTQQILSIYNRFGRL 239 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 + +P+ V++ F R+I W L Sbjct: 240 LYGNPDTAVDVLEYVVFERHISDEYGTWRL 269 >gi|206559267|ref|YP_002230028.1| hypothetical protein BCAL0874 [Burkholderia cenocepacia J2315] gi|198035305|emb|CAR51180.1| putative membrane protein [Burkholderia cenocepacia J2315] Length = 343 Score = 61.8 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 71/238 (29%), Gaps = 32/238 (13%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQL----------RGVLGKKTGNEKPFSGFFSGKYVFS 52 F M + +I L A + ++ + V G + SG +S F Sbjct: 124 FASMMANVIVIALLAMVGIWLIRKFMNRRRPQEPAYSVGGAASS-----SGGYSQSPSFQ 178 Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 + + + + + V FD + FL A+ + Sbjct: 179 QGNAGSNYAGSGSSYANEAQGVFGGGAAAAGAAAAAAAPLQVPAGFDTEAFLRSAKVYFV 238 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 + ++ +G + I + ++ + L +R ++ +V + D +++ Sbjct: 239 RLQAAWDQGNLADIREFTTPEMFAEIKIDLDSR--GNDANQTDVVQL-DAELVAIEDRGI 295 Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R L+ S ++W + + W+L + Sbjct: 296 EQSASVRF-----------HGLIRESANTSAAPFDEVWNLSK---SGSQGWLLAGIQQ 339 >gi|254247237|ref|ZP_04940558.1| Mitochondrial import inner membrane translocase, subunit Tim44-like protein [Burkholderia cenocepacia PC184] gi|124872013|gb|EAY63729.1| Mitochondrial import inner membrane translocase, subunit Tim44-like protein [Burkholderia cenocepacia PC184] Length = 343 Score = 61.8 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 71/238 (29%), Gaps = 32/238 (13%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQL----------RGVLGKKTGNEKPFSGFFSGKYVFS 52 F M + +I L A + ++ + V G + SG +S F Sbjct: 124 FASMMANVIVIALLAMVGIWLIRKFMNRRRPQEPAYSVGGAASS-----SGGYSQSPSFQ 178 Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 + + + + + V FD + FL A+ + Sbjct: 179 QGNTGSNYAGSGSSYANEAQGVFGGGAAAAGAAAAAAAPLQVPAGFDTEAFLRSAKVYFV 238 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 + ++ +G + I + ++ + L +R ++ +V + D +++ Sbjct: 239 RLQAAWDQGNLADIREFTTPEMFAEIKIDLDSR--GNDANQTDVVQL-DAELVAIEDRGI 295 Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R L+ S ++W + + W+L + Sbjct: 296 EQSASVRF-----------HGLIRESANTSAAPFDEVWNLSK---SGSQGWLLAGIQQ 339 >gi|71909645|ref|YP_287232.1| import inner membrane translocase, subunit Tim44 [Dechloromonas aromatica RCB] gi|71849266|gb|AAZ48762.1| Mitochondrial import inner membrane translocase, subunit Tim44 [Dechloromonas aromatica RCB] Length = 288 Score = 61.8 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 71/220 (32%), Gaps = 33/220 (15%) Query: 16 FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 A + V GV+G +F K + + +N Sbjct: 99 MALLAVAVI----GVIG-----------YFMRKKAAASQQGGMQYAGANANYGNNAPHQP 143 Query: 76 ELFPIGTRLNKVMRDIVS---VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + P G + + + FD + F+ A+ ++ + S G + I + Sbjct: 144 DFIPAGGSAAAPLASATTGGNIPAGFDVEGFVRNAKVNFIRLQASNDAGNLDDIREFTSP 203 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 ++ + ++ R + ++ +V ++ ++I+ + E + +++R G I D Sbjct: 204 EMFAEIKMEMAERGNA--KQETDVVQLN-AEVIDVAEEPSRYIVSVRFTG-LIREEKDAA 259 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +IW + S W L + + Sbjct: 260 AAPFD----------EIWHMTKPTDNSR-GWTLAGIQQVQ 288 >gi|300313191|ref|YP_003777283.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gi|300075976|gb|ADJ65375.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 317 Score = 61.8 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 66/227 (29%), Gaps = 18/227 (7%) Query: 6 MDSGDFLILLFAFI-TFFVFL-QLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 M +L A + +FL ++ G++ N P +G Sbjct: 106 MGGLLGSLLTIALLCAAVIFLIRMFA-RGREAQNNNPAYATPMPGVSPIGSAAGATPEIG 164 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 G + N + G + FD F+ A+ + + ++ V Sbjct: 165 SGLRDINPPPALQGNAYGAAAQPAQIQQWGIPEGFDTAGFVRNAKTYFIRLQAAWDRADV 224 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 + I + ++ + L+ R ++ V D +++ T+R Sbjct: 225 NDIREFTTPEMFAELRMQLTER---GAAPNATDVVQLDAQLLGIETMAFDYLATVRF--- 278 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 L+ + +IW + + S WVL + Sbjct: 279 --------QGLIKEAPDVSAEPFAEIWNLSKPLNGSG-GWVLAGIQQ 316 >gi|296533885|ref|ZP_06896415.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957] gi|296265797|gb|EFH11892.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957] Length = 47 Score = 61.4 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 22/40 (55%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYV 50 ++LFA + F+ L+LR VLG++ G E+P + Sbjct: 7 VDLILFAMVAAFLVLRLRSVLGRRQGFERPPQERPAPGQA 46 >gi|270158819|ref|ZP_06187476.1| transmembrane protein [Legionella longbeachae D-4968] gi|289166389|ref|YP_003456527.1| hypothtical protein [Legionella longbeachae NSW150] gi|269990844|gb|EEZ97098.1| transmembrane protein [Legionella longbeachae D-4968] gi|288859562|emb|CBJ13527.1| putative hypothtical protein [Legionella longbeachae NSW150] Length = 273 Score = 61.4 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 80/225 (35%), Gaps = 46/225 (20%) Query: 8 SGDFLILLFAFITFFV--FLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 SG L+ + FFV F + + G +TG PF+ Sbjct: 88 SGILSWLILGAVLFFVVGFFRRKMQPGYQTGQSSPFNQN--------------------- 126 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +N +G N I F P+ FL EA+ ++ + ++ + + Sbjct: 127 -PLNNFTQSFSNSSMGGNSNTSEYPI-----GFVPETFLREAKVTFNRLQAAYDQKNLQD 180 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + + V+ + L R + ++ + D ++++ S + N+ ++R G Sbjct: 181 LSEFTAPEVFAEIKMQLDERGDAPNK--TEVISL-DAELLDISKQSNSFIASVRFTG--- 234 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 I + E ++ +IW F R P S P W++ + Sbjct: 235 ---------SIKENDEQPSQLDEIWHF-RQFPNS-PQWLVGGVQQ 268 >gi|330961416|gb|EGH61676.1| Tim44-like domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 280 Score = 61.4 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 63/221 (28%), Gaps = 37/221 (16%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F IL+ I F+ + ++ ++P Y G Sbjct: 95 LFDILIMGLIA-FLIFRFIA---RRRQQQQPKMAAAGAPYQREASQPGQNPIFGSSAPAS 150 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 IN F+ + FL AR ++A+ + ++ I + Sbjct: 151 AAPVINAPA------------------WFNEERFLEAARGHFQALQQHWDANEMDKIAEF 192 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V ++ Q R +S+ + +++ + T+ G ++ + Sbjct: 193 VTPQMLQFLK---KERADLGDGFQSTFIDNLSVQLDGVDDRADKTIATLTFSGVSKTSRF 249 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D + S W R + P W++ + Sbjct: 250 D-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 278 >gi|225707976|gb|ACO09834.1| 39S ribosomal protein L45, mitochondrial precursor [Osmerus mordax] Length = 315 Score = 61.4 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 12/158 (7%) Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 E +R I T F K+F A+ Y ++ + + LV R Sbjct: 114 TEQIRQSAASQLAVRKIKEHDTTFTTKEFPGHAQGIYIEAHNALTQFNKEKLHSLVTERC 173 Query: 135 YQDFNDSLSTRKSNEKNVKSSLV-GIDDMKIINAS-----IEENT-VYITIRIVGQFISA 187 Y + TR + K ++ + V ++ K+++A + N +T+RI + A Sbjct: 174 YPE-----MTRANRYKTLRWTFVESLEPPKVVHARCPEMVSKGNLYGQVTLRIHSRQTLA 228 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 YD+ L+ E V++ R++ W L Sbjct: 229 IYDRFGRLMLGSEEEPKDVLEYLVLERHLINPYGRWRL 266 >gi|291237324|ref|XP_002738585.1| PREDICTED: mitochondrial ribosomal protein L45-like [Saccoglossus kowalevskii] Length = 318 Score = 61.4 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 53/143 (37%), Gaps = 13/143 (9%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ----DFNDSLS 143 +R I +F+ KDF A+ + + + + I+ + +++ F Sbjct: 138 LRKIRKFDPEFNTKDF---AKQAQHIFIKAHSA--LQDIKNFLLMNIHEDMVWGFKYKTV 192 Query: 144 TRKSNEKNVKSSLVGIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSDPEI 202 E K +V I +I+ + NT T+R + A YD+ ++ Sbjct: 193 RWNWVESIEKPRVVHIRCTDMIS---KGNTYAQATVRFHSKQTLAIYDRFGRIMQGSETS 249 Query: 203 FGKVIDIWTFVRNIPPSNPNWVL 225 V++ F +++ +W + Sbjct: 250 PKDVLEYVVFEKHLMDKYGSWRI 272 >gi|116249720|ref|YP_765558.1| putative transmembrane TIM family protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254368|emb|CAK03999.1| putative transmembrane TIM family protein [Rhizobium leguminosarum bv. viciae 3841] Length = 331 Score = 61.4 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 6/122 (4%) Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 + ++ + +L + L +N S V + I A E+ Sbjct: 210 QVQTAYGAEDYGTLRRLTTPEAMSYLAEELGENATNGVRNSVSDVKLLQGDIAEAWREDG 269 Query: 173 TVYITI--RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 Y T+ R D ++S D + ++WTFVR W L + + Sbjct: 270 QEYATLAMRYSSIDAMVERDS-GRVVSGDDRRPSESTEVWTFVRKSGAD---WKLAAIQG 325 Query: 231 GE 232 E Sbjct: 326 AE 327 >gi|90423037|ref|YP_531407.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisB18] gi|90105051|gb|ABD87088.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisB18] Length = 332 Score = 61.4 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 13/129 (10%) Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164 ++E I ++ G V + L + F+ L+ K+ K S V + + Sbjct: 208 EAFEKLLSEIQTTWSNGDVGHLHTLATPEMVSYFSGDLAANKARGVENKVSDVKLLQGDL 267 Query: 165 INASIEENT--VYITIRIVGQFISASYD-KDNLLISSDPEIFGKVIDIWTFVRNIPPSNP 221 A E T + +R + + D L+ E + ++WTF R Sbjct: 268 AEAWREGETDYASVAMRFS--LVDKTIDTATGKLVEGS-EQPTEATEVWTFARRRGSE-- 322 Query: 222 NWVLISTKL 230 W L + + Sbjct: 323 -WELSAIQQ 330 >gi|170734093|ref|YP_001766040.1| import inner membrane translocase subunit Tim44 [Burkholderia cenocepacia MC0-3] gi|169817335|gb|ACA91918.1| import inner membrane translocase subunit Tim44 [Burkholderia cenocepacia MC0-3] Length = 343 Score = 61.4 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 71/238 (29%), Gaps = 32/238 (13%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQL----------RGVLGKKTGNEKPFSGFFSGKYVFS 52 F M + +I L A + ++ + V G + SG +S F Sbjct: 124 FASMMANVIVIALLAMVGIWLIRKFMNRRRPQEPAYSVGGAASS-----SGGYSQSPSFQ 178 Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 + + + + + V FD + FL A+ + Sbjct: 179 QGNTGSNYAGSGSSYANEAQGVFGGGAAAAGAAAAAAAPLQVPAGFDIEAFLRSAKVYFV 238 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 + ++ +G + I + ++ + L +R ++ +V + D +++ Sbjct: 239 RLQAAWDQGNLADIREFTTPEMFAEIKIDLDSR--GNDANQTDVVQL-DAELVAIEDRGI 295 Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R L+ + ++W + + W+L + Sbjct: 296 EQSASVRF-----------HGLIREAANTSAAPFDEVWNLSK---SGSQGWLLAGIQQ 339 >gi|196000530|ref|XP_002110133.1| hypothetical protein TRIADDRAFT_53791 [Trichoplax adhaerens] gi|190588257|gb|EDV28299.1| hypothetical protein TRIADDRAFT_53791 [Trichoplax adhaerens] Length = 304 Score = 61.4 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 51/141 (36%), Gaps = 6/141 (4%) Query: 91 IVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN-- 148 I F+ DF +A Y A ++ + L + + + R+ Sbjct: 139 IKRKAKPFNISDFKLQAEKIYIATNEALASQDKTRLHTLTTEIAFHELRSAFKNRQIKWQ 198 Query: 149 --EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 ++ I + + + + IT+++ + I A YD+ N L++ + + + Sbjct: 199 CLGTASAPRIINIRVIPLEDKT--NTFAQITVKLQLKQILAVYDQYNRLLTGSEDRYKQP 256 Query: 207 IDIWTFVRNIPPSNPNWVLIS 227 + F R++ N W + Sbjct: 257 TEYVVFERHLAKPNSPWRICG 277 >gi|254693967|ref|ZP_05155795.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 3 str. Tulya] Length = 134 Score = 61.4 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 4/120 (3%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I + A+ KL + L S K + V + + A E N Sbjct: 18 IQGGYGREDYAALRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNV 77 Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 Y T+ + I D+ ++ +P + +++WTF R + W L + + E Sbjct: 78 EYATVAMRYSAIDVVVDRTSGAVVEGNPNEPVESVELWTFTRTDGGA---WQLAAIQGTE 134 >gi|107023666|ref|YP_621993.1| import inner membrane translocase, subunit Tim44 [Burkholderia cenocepacia AU 1054] gi|116690751|ref|YP_836374.1| import inner membrane translocase, subunit Tim44 [Burkholderia cenocepacia HI2424] gi|105893855|gb|ABF77020.1| import inner membrane translocase, subunit Tim44 [Burkholderia cenocepacia AU 1054] gi|116648840|gb|ABK09481.1| import inner membrane translocase, subunit Tim44 [Burkholderia cenocepacia HI2424] Length = 343 Score = 61.4 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 71/238 (29%), Gaps = 32/238 (13%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQL----------RGVLGKKTGNEKPFSGFFSGKYVFS 52 F M + +I L A + ++ + V G + SG +S F Sbjct: 124 FASMMANVIVIALLAMVGIWLIRKFMNRRRPQEPAYSVGGAASS-----SGGYSQSPSFQ 178 Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 + + + + + V FD + FL A+ + Sbjct: 179 QGNTGSNYAGSGSSYANEAQGVFGGGAAAAGAAAAAAAPLQVPAGFDTEAFLRSAKVYFV 238 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 + ++ +G + I + ++ + L +R ++ +V + D +++ Sbjct: 239 RLQAAWDQGNLADIREFTTPEMFAEIKIDLDSR--GNDANQTDVVQL-DAELVAIEDRGI 295 Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R L+ + ++W + + W+L + Sbjct: 296 EQSASVRF-----------HGLIREAANTSAAPFDEVWNLSK---SGSQGWLLAGIQQ 339 >gi|195395288|ref|XP_002056268.1| GJ10851 [Drosophila virilis] gi|194142977|gb|EDW59380.1| GJ10851 [Drosophila virilis] Length = 362 Score = 61.4 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 77/209 (36%), Gaps = 21/209 (10%) Query: 28 RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83 RGVL + E+PF +G YV + D + I G K+ E ++ Sbjct: 88 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISSSGTKQKL-----EFLEKKSK 142 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +R I + +F DF +A+ Y A + + I + V R Y + ++ Sbjct: 143 SLMAVRKIRAYEENFSSDDFGVQAQEIYIAAHTHMAAKEKYKIREFVSERCYPEMMHNVK 202 Query: 144 TRKSNEKNVKSSLV------GIDDMKIINASIEEN-TVYITIRIVGQFISASYDKDNLLI 196 K + + + ++ +EN +T+R Q + A YD+ L+ Sbjct: 203 D-----KTIHWRFLQSLEPPRVVHARVTEVITKENLFAQVTVRFHTQQMLAIYDRFGRLM 257 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 + V++ F ++I W L Sbjct: 258 HGSEIVTKDVLEYVVFEKHISNEYGKWRL 286 >gi|51473623|ref|YP_067380.1| hypothetical protein RT0421 [Rickettsia typhi str. Wilmington] gi|51459935|gb|AAU03898.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 212 Score = 61.4 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 58/144 (40%), Gaps = 20/144 (13%) Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145 M I FDP F+N A+ +++ I+++ ++ + + +L+D R ++F ++ Sbjct: 87 DGMEQIHKRLYSFDPVKFINNAKTAFQMIIEAAYKKDIKELTELIDKRYLEEFEK-ITP- 144 Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 S SS + K + N ++I + G+ ++ Sbjct: 145 -SYGDFFDSSAL---SAKYSEIYMFGNNIFIKLLFQGK----------NVVD----KIEN 186 Query: 206 VIDIWTFVRNIPPSNPNWVLISTK 229 + + WTF RN +W L + + Sbjct: 187 LQEEWTFTRNANTKEVDWFLSNIE 210 >gi|121603693|ref|YP_981022.1| import inner membrane translocase subunit Tim44 [Polaromonas naphthalenivorans CJ2] gi|120592662|gb|ABM36101.1| import inner membrane translocase, subunit Tim44 [Polaromonas naphthalenivorans CJ2] Length = 330 Score = 61.0 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 24/246 (9%), Positives = 76/246 (30%), Gaps = 42/246 (17%) Query: 12 LILLFAFIT----FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 I++FA + + +R + G+ G P + + F ++ + Sbjct: 98 QIIMFALLALVVMVVIGFVMRKLKGR--GASAPGATRSQPPFAFQGAGNAAEASIPRSYS 155 Query: 68 KDNLDSINELFP-------------------IGTRLNKVMRDIVS--VYTDFDPKDFLNE 106 N+ + P G+ + + S V FD FL Sbjct: 156 PSNVGNDASARPWERNTTLFDNMGTAAAPAAGGSMIGSGLSGSQSWGVPAGFDADGFLKA 215 Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN--EKNVKSSLVGIDDMKI 164 + ++ + D++ + + ++ + + L+ R+++ + K+ +V ++ ++ Sbjct: 216 CKANFVTLQDAWDRSDIQNLRSMMTDDMLEQIKTQLADRETHTGGVSNKTEVVMLN-AQL 274 Query: 165 INASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 + + ++ ++ ++W + W+ Sbjct: 275 LGIEEMSDVYMASVEFS-----------GMIKEDASSGASPFREVWNMTKP-RSGGSGWL 322 Query: 225 LISTKL 230 + + Sbjct: 323 VAGVQA 328 >gi|170042852|ref|XP_001849125.1| 39S ribosomal protein L45 [Culex quinquefasciatus] gi|167866282|gb|EDS29665.1| 39S ribosomal protein L45 [Culex quinquefasciatus] Length = 336 Score = 61.0 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 80/209 (38%), Gaps = 21/209 (10%) Query: 28 RGVLGKKTGNEKPF----SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83 RG+L + E+PF +G Y+ + D + +G K+ E T+ Sbjct: 83 RGLLPPRPWLERPFHISCTGGVFEPYIPPEGDGKMSAVSKEGAKQK-----FEQLEKKTK 137 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +R I S DF+P +F A++ Y ++ + + ++V R Y + ++S Sbjct: 138 SMMAIRKIRSYDDDFEPPEFAGYAQDIYIDTHNTLAAKNKYKLREIVTERAYPELIHNVS 197 Query: 144 TRKSNEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLI 196 K + + + + + ++N +T+R Q I A YD+ L+ Sbjct: 198 D-----KTIHWKFLKSLEPPRVVHARCTDVISKDNIFAQVTVRFHSQQILAIYDRFGRLM 252 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 I ++ F +++ W L Sbjct: 253 HGSETIAKDCLEYVVFEKHVSNEYGVWRL 281 >gi|86750877|ref|YP_487373.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris HaA2] gi|86573905|gb|ABD08462.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris HaA2] Length = 338 Score = 61.0 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 7/126 (5%) Query: 109 NSYEA----IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164 ++E I ++ + +L + F L+ K+ K S V + + Sbjct: 214 EAFEQLLGDIQSAWTNEDTEKLNQLTTPEMASYFAKDLAENKAANDINKVSDVKLLQGDL 273 Query: 165 INASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 A E T Y T+ + + + ++ + + E +V ++WTF R +W Sbjct: 274 AEAWREGETDYATVAMRFSLVDKTLERGTDRLVAGSETPIEVTEVWTFARRPGA---HWE 330 Query: 225 LISTKL 230 L + + Sbjct: 331 LSAIQQ 336 >gi|253997457|ref|YP_003049521.1| import inner membrane translocase subunit Tim44 [Methylotenera mobilis JLW8] gi|253984136|gb|ACT48994.1| import inner membrane translocase subunit Tim44 [Methylotenera mobilis JLW8] Length = 270 Score = 61.0 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 51/134 (38%), Gaps = 15/134 (11%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 DF FL A+ S+ + + ++ + + V+ + + + R +V+++ Sbjct: 150 DFPVDSFLRNAKASFIRLQAANDRKDINDVREYTTPEVFAEISMQMQER---GSSVQTTE 206 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 V + +++ + E+ ++R GQ + + + ++W ++ Sbjct: 207 VVAINAELLEVANEDAYTIASVRFTGQL----RENNG--------ALESIDEVWHIQKDT 254 Query: 217 PPSNPNWVLISTKL 230 + W+L + Sbjct: 255 TNTQEKWLLAGIQQ 268 >gi|237747318|ref|ZP_04577798.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gi|229378669|gb|EEO28760.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 305 Score = 61.0 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 66/223 (29%), Gaps = 26/223 (11%) Query: 9 GDFLILLFAFITFFVF-LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 G +L I +V LR + + + Sbjct: 106 GMISTILMLVIIVYVVRFLLR----------RFSKRRQMEQDPTAYASNYRNTGYQHSST 155 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 + + F + D + DFD FL A++ + + ++ +G ++ I Sbjct: 156 PEIGSGLPHQFQGNQSGAGAVSDTWGIPADFDVPAFLRAAKSYFIRMQAAWDKGDINDIH 215 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 + ++ + L R + + V D +++ + +++ G+ Sbjct: 216 EFTTPEMFAEIRLQLQER---GDSPNVTDVVSLDAELLGIETLNDEYMASVKFSGKI--- 269 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + ++ ++W R I + WVL + Sbjct: 270 -REAESAPAE-------PFEEVWNLTRPISKKD-GWVLAGIQQ 303 >gi|66048290|ref|YP_238131.1| import inner membrane translocase, subunit Tim44 [Pseudomonas syringae pv. syringae B728a] gi|63258997|gb|AAY40093.1| Mitochondrial import inner membrane translocase, subunit Tim44 [Pseudomonas syringae pv. syringae B728a] Length = 281 Score = 61.0 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 67/221 (30%), Gaps = 36/221 (16%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F IL+ I F+ + + K G + + Sbjct: 95 LFDILIMGLIA-FLIFR---------------FIARRRQQQQPKMAAAGAPPYQRETSQP 138 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + I + +++ F+ + FL+ AR ++++ + + ++ I + Sbjct: 139 AQNPIFGSSSPASA-----APVINAPAWFNEQRFLDAARGHFQSLQEHWDANEMDKIAEF 193 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V ++ Q R +S+ + +++ + T+ G ++ + Sbjct: 194 VTPQMLQFLK---KERADLGDGFQSTFIENLQVQLDGVDDRADKTIATLTFSGVSKTSRF 250 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D + S W R + P W++ + Sbjct: 251 D-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 279 >gi|66550524|ref|XP_625034.1| PREDICTED: probable 39S ribosomal protein L45, mitochondrial [Apis mellifera] Length = 332 Score = 61.0 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 77/210 (36%), Gaps = 23/210 (10%) Query: 28 RGVLGKKTGNEKPF-----SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82 G++ ++T NE+P G F V + IT K+K E + Sbjct: 80 YGIMPQRTWNERPIYISSTPGIFESYIVPEGDGKFSPITTTGAKQK------IEFINKKS 133 Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 + +R I ++ K FL + + Y+ ++ K I K V Y ++ Sbjct: 134 KSFIALRKIKGYEENYTTKTFLEQTLDIYKKAHEALCTQKKDEILKYVTETAYPIMIHNI 193 Query: 143 STRKSNEKNVKSSLV-GIDDMKIINASI-----EENT-VYITIRIVGQFISASYDKDNLL 195 K + + ++ ++++A + + N +TIR Q I YD+ + Sbjct: 194 K-----NKTIIWKFMESLEPARLVHARVTSIVTQGNEFAQVTIRFHTQQILCIYDRFGRV 248 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 + + V+D F +++ W + Sbjct: 249 LLGSETVKKDVLDYIVFEKHLSNEYGIWRI 278 >gi|294340780|emb|CAZ89175.1| conserved hypothetical protein; putative membrane protein [Thiomonas sp. 3As] Length = 304 Score = 61.0 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 62/219 (28%), Gaps = 37/219 (16%) Query: 15 LFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSI 74 L A F++F LR + S S + + +G G + Sbjct: 118 LLALAAFWIFNLLR----------RKSSTDKSAQPMQYAGASQGYAQAPLGVETHMPAQW 167 Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 T + DFD FL A+ Y + ++ +++++ + + Sbjct: 168 TPGAGSQTASGAGIPA------DFDRDGFLASAKQHYIRLQQAWDAADLNSLKTFATAEM 221 Query: 135 YQDFNDSLSTRKSNEKNV-KSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 Y L R K+ +V + + ++ ++ Sbjct: 222 YDALAADLQQR---GMTPNKTEIVTL-EASLLALEETPTEYVASVEFS-----------G 266 Query: 194 LLISSDPEIFGKVIDIWTFV--RNIPPSNPNWVLISTKL 230 L+ V ++W V R+ W L + Sbjct: 267 LVREETWGGASPVREVWNLVKPRDGSSG---WQLAGIQQ 302 >gi|85715641|ref|ZP_01046621.1| hypothetical protein NB311A_18371 [Nitrobacter sp. Nb-311A] gi|85697580|gb|EAQ35457.1| hypothetical protein NB311A_18371 [Nitrobacter sp. Nb-311A] Length = 330 Score = 61.0 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 9/127 (7%) Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164 ++E I ++ V+ + L + F + L + K S V + + Sbjct: 207 EAFERLLGEIQTAWSNEDVNTLHALATPEMVSYFTEDLQANDARGVVNKVSDVKLLQGDL 266 Query: 165 INASIEENTVYITIRIVGQFISASYDKDN-LLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223 A E T Y T+ + I + ++ ++ + + D+WTF R W Sbjct: 267 AEAWREGMTDYATVALRYSLIDKTIERAGGRIVEGS-DQPQEATDVWTFARRGGGK---W 322 Query: 224 VLISTKL 230 L + + Sbjct: 323 ELSAIQQ 329 >gi|299067983|emb|CBJ39197.1| conserved membrane protein of unknown function [Ralstonia solanacearum CMR15] Length = 345 Score = 61.0 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 29/251 (11%), Positives = 72/251 (28%), Gaps = 51/251 (20%) Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFS--GKYVFSKRDERGIITLGKG 65 S LI + AF+ ++ +LRG +P ++ G + R+ Sbjct: 116 SNLILIAIIAFVVMWIIRKLRGS--------RPQEPAYATGGPSLSGDREPYVPSPAAPA 167 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYT--------------------------DFD 99 + + + + L + ++ DFD Sbjct: 168 AQPAAPVAASAGTGNASGLGSGAQTAAQAWSLGGPAAPAANAPAAAPAAQQPWGVPADFD 227 Query: 100 PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159 + FL A+ + + ++ G ++ I + ++ + L+ R + V Sbjct: 228 TQAFLRNAKVYFVRLQAAWDAGNLNDIREFTTPEMFAEIKMDLTDR---GTVPNKTDVVS 284 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 + +++ ++R ++ ++W + S Sbjct: 285 VEAELLGIETHPTEYLASVRFS-----------GMIREEASAPAQPFAEVWNLTKPTQGS 333 Query: 220 NPNWVLISTKL 230 WVL + Sbjct: 334 G-GWVLAGIQQ 343 >gi|296157950|ref|ZP_06840783.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. Ch1-1] gi|295891718|gb|EFG71503.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. Ch1-1] Length = 320 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 69/225 (30%), Gaps = 27/225 (12%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 ++ +++ A + F F+ + G +++ G L + + Sbjct: 119 NALLIGLVVVAGVMLFRFI-----------ANRRRPDLAYGHGSANRQQTNGSPFLNQVR 167 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDF-DPKDFLNEARNSYEAIVDSFFEGKVHA 125 + ++ + + + D FL A+ + + ++ + Sbjct: 168 EARPDTNLRDWPRAAMGTTGAAGSVKAPEPALADQAAFLVSAKAMFMRLQGAWDRNEQGD 227 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + +L ++ L R + V D +++ + +++R GQ Sbjct: 228 LFELTTPEMFMRLKQDLEHR---GHEPSRTDVTQLDAEVLGTESNADETLVSVRFYGQMR 284 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D +I +IW VR++ + W L + Sbjct: 285 -----------EDDAQIAQPFQEIWNMVRSVH-GDEGWRLAGIQQ 317 >gi|192292770|ref|YP_001993375.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris TIE-1] gi|192286519|gb|ACF02900.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris TIE-1] Length = 337 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 11/192 (5%) Query: 43 GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKD 102 G++ + G G+G + N + R S P + Sbjct: 151 GWWQRRNNPQPAYAAGQ-APGQGPQPMNQGPQSPGPQAAYRTGFGFGGGASNDR---PLE 206 Query: 103 FLNEARNSYEA----IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG 158 E ++E I ++ + + +L + F L K+ K S V Sbjct: 207 IKPEDYEAFERLLGDIQAAWSNEDIDRLRQLATPEMASYFAKDLEENKAANDINKVSDVK 266 Query: 159 IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP 218 + + A E + Y T+ + + + ++ + + E +V +IWTF R Sbjct: 267 LLQGDLAEAWREGESDYATVAMRFSLVDKTLERGTNRLVAGSETPIEVTEIWTFTRRPGA 326 Query: 219 SNPNWVLISTKL 230 S W L + + Sbjct: 327 S---WELAAIQQ 335 >gi|332029058|gb|EGI69072.1| Putative 39S ribosomal protein L45, mitochondrial [Acromyrmex echinatior] Length = 337 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 68/200 (34%), Gaps = 23/200 (11%) Query: 38 EKPFS-----GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIV 92 E+P F + +IT K+K F ++ +R I Sbjct: 95 ERPAFISSTSSIFESYVAPEGDGKYSVITKEGAKQKFTF------FEKKSKSFMAIRKIK 148 Query: 93 SVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNV 152 S F FL EA + Y+ ++ I K V Y ++ + K + Sbjct: 149 SFDDSFKTSFFLEEALDIYQKAYEALASKNEEEIIKYVTEMAY----PKITH-NTMNKTI 203 Query: 153 KSSLV-GIDDMKIINASI------EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 + ++ ++++A E +T+R Q + A YD+ LI + Sbjct: 204 HWKFLESLEPARLVHARTTDVITKENVFAQLTVRFHTQQVLAIYDRFGHLIQGSEILRKD 263 Query: 206 VIDIWTFVRNIPPSNPNWVL 225 V++ F +++ W + Sbjct: 264 VLEYIVFEKHLANEYGIWRI 283 >gi|296136650|ref|YP_003643892.1| import inner membrane translocase subunit Tim44 [Thiomonas intermedia K12] gi|295796772|gb|ADG31562.1| import inner membrane translocase subunit Tim44 [Thiomonas intermedia K12] Length = 304 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 62/219 (28%), Gaps = 37/219 (16%) Query: 15 LFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSI 74 L A F++F LR + S S + + +G G + Sbjct: 118 LLALAAFWIFNLLR----------RKSSTDKSAQPMQYAGASQGYAQAPLGAETHVPAQW 167 Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 T + DFD FL A+ Y + ++ +++++ + + Sbjct: 168 TPGAGSQTASGASIPA------DFDRDGFLASAKQHYIRLQQAWDAADLNSLKTFTTAEM 221 Query: 135 YQDFNDSLSTRKSNEKNV-KSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 Y L R K+ +V + + ++ ++ Sbjct: 222 YDALAADLQQR---GMTPNKTEIVTL-EASLLALEETPTEYVASVEFS-----------G 266 Query: 194 LLISSDPEIFGKVIDIWTFV--RNIPPSNPNWVLISTKL 230 L+ V ++W V R+ W L + Sbjct: 267 LVREETWGGASPVREVWNLVKPRDGSSG---WQLAGIQQ 302 >gi|39936942|ref|NP_949218.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris CGA009] gi|39650799|emb|CAE29322.1| conserved unknown protein [Rhodopseudomonas palustris CGA009] Length = 337 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 11/192 (5%) Query: 43 GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKD 102 G++ + G G+G + N + R S P + Sbjct: 151 GWWQRRNNPQPAYAAGQ-APGQGPQPMNQGPQSPGPQAAYRTGFGFGGGASNDR---PLE 206 Query: 103 FLNEARNSYEA----IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG 158 E ++E I ++ + + +L + F L K+ K S V Sbjct: 207 IKPEDYEAFERLLGDIQAAWSNEDIDRLRQLATPEMASYFAKDLEENKAANDINKVSDVK 266 Query: 159 IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP 218 + + A E + Y T+ + + + ++ + + E +V +IWTF R Sbjct: 267 LLQGDLAEAWREGESDYATVAMRFSLVDKTLERGTNRLVAGSETPIEVTEIWTFTRRPGA 326 Query: 219 SNPNWVLISTKL 230 S W L + + Sbjct: 327 S---WELAAIQQ 335 >gi|220905000|ref|YP_002480312.1| import inner membrane translocase subunit Tim44 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869299|gb|ACL49634.1| import inner membrane translocase subunit Tim44 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 308 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 77/224 (34%), Gaps = 31/224 (13%) Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL-- 71 ++ + F+ L+L + + S + G +G ++++ Sbjct: 111 IILIGLLAFLGLKL---------FARFRNRQASATAGAHGQHSGGYSDRMQGMQRESAGG 161 Query: 72 DSINELFPIGTRLNKVMRD---IVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 + + L G M I FD +FL A+ +Y + +S+ + + I + Sbjct: 162 NGWDVLRGDGQGAAAHMAAGPNIPMPE-GFDVDEFLRGAKMAYTRLQNSWDKRDMDDISQ 220 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 S V ++ + + + S+ + + + +++ E N Y + + Sbjct: 221 FTSSAV----QHAVREQMEADPSPSSTEILLVNAQLLGVENEGNEQYAQVFFDVLMRESP 276 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D + V ++W F+R + +W L + E Sbjct: 277 ----------DQQAPSTVREVWHFMRPVQGG--SWKLDGIQQVE 308 >gi|262376593|ref|ZP_06069821.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] gi|262308303|gb|EEY89438.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] Length = 327 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 30/231 (12%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFF---------SGKYVFSKRDERGIIT 61 ILL A + FF+F ++ KK PF+ D I Sbjct: 115 IWILLAAAVAFFIFRKMSA---KKKVASNPFAPNSGAGNTAPFGQAPTAPRGGDSTNIFG 171 Query: 62 LGKGKKKDNLDSINELFPIG-TRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFF 119 G + + ++ P+ S +P FL AR + I Sbjct: 172 QNVGGQTSSNNAPLGSAPVNNAPFGAAYTQSGSQLPDGTEPAAFLRVARQRFNHIQSMNT 231 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 + I++ + +YQ + + + + + + ++ ++++S + +++R Sbjct: 232 ASNISEIQRYLTPELYQSMYNDIMSNQDQDV---AEFSNLN-AMVVDSSTDNGQYIVSVR 287 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + + +IW F + N +WV+ + Sbjct: 288 F-----------TGTVSEDLNSLPQPFAEIWHFTKPAGS-NQDWVVAGIQQ 326 >gi|226952069|ref|ZP_03822533.1| membrane protein [Acinetobacter sp. ATCC 27244] gi|294651122|ref|ZP_06728458.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] gi|226837187|gb|EEH69570.1| membrane protein [Acinetobacter sp. ATCC 27244] gi|292823016|gb|EFF81883.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] Length = 338 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 25/195 (12%), Positives = 52/195 (26%), Gaps = 16/195 (8%) Query: 37 NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT 96 N FS S D I G + M + Sbjct: 160 NSNQFSRQSSQPTARQTGDNTNIFGQAVGGGAATQSPFGNAPTQAPFGSATMSSGNQLPD 219 Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 +P FL AR + I + I + + +Y + + + + Sbjct: 220 GTEPAAFLRVARQRFNHIQSMNTASNIQEIRRYLTPDLYASMYQDIMANQDQDV---AEF 276 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 ++ I + E +++R + + +IW FV+++ Sbjct: 277 SNLN-AMIAETATENGQYVVSVRF-----------TGTVSEDLNSLPQPFTEIWHFVKDV 324 Query: 217 PPSNPNWVLISTKLG 231 +WV+ + Sbjct: 325 GSQQ-DWVVAGIQQA 338 >gi|33603441|ref|NP_891001.1| hypothetical protein BB4467 [Bordetella bronchiseptica RB50] gi|33577565|emb|CAE34830.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 340 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 67/230 (29%), Gaps = 34/230 (14%) Query: 10 DFLILLFAFITFFVFLQLR---------GVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60 +++FA I F+ +LR G GN +P + S Sbjct: 129 LIALVVFAVI--FIVRRLRGGAPRQAMQSAYGAAGGN-RPGQPSQQPMWRESLNPAPAQQ 185 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 + P + DFD FL +A++ + I + Sbjct: 186 PAAAPVAAAAPAAAAAALPKAGDDGNWF-----IPGDFDTPRFLQQAKDQFVRIQGIWDS 240 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 G+V ++ + + + L R + + L+ +++ + ++R Sbjct: 241 GEVESLRDFLTDDLISELKPQLEARGAAANKTEVVLLN---AELLGIETVSDGHLASVRF 297 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G + + ++W P++ W+L + Sbjct: 298 SGMLR-----------EAPGTEAFRFEEVWNL---FKPADGGWLLAGIQQ 333 >gi|148256773|ref|YP_001241358.1| hypothetical protein BBta_5490 [Bradyrhizobium sp. BTAi1] gi|146408946|gb|ABQ37452.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 325 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 13/129 (10%) Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164 ++E I ++ V + L + F L ++ K S V + + Sbjct: 201 EAFERLLGEIQQAWSNEDVGRLRLLSTPEMASYFERDLEQNQARGVVNKVSGVKLLQGDL 260 Query: 165 INASIEENTVYITI--RI-VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP 221 A E Y T+ R + + ++ + +V +IWTF+R+ Sbjct: 261 AEAWRENGADYATVAMRFTLADKT--TERASGRVVEGS-DQPQEVTEIWTFLRHPGAD-- 315 Query: 222 NWVLISTKL 230 W L + + Sbjct: 316 -WQLSAIQQ 323 >gi|53724992|ref|YP_102025.1| hypothetical protein BMA0187 [Burkholderia mallei ATCC 23344] gi|121599413|ref|YP_994055.1| hypothetical protein BMASAVP1_A2759 [Burkholderia mallei SAVP1] gi|124384532|ref|YP_001028281.1| hypothetical protein BMA10229_A2319 [Burkholderia mallei NCTC 10229] gi|126450327|ref|YP_001081925.1| hypothetical protein BMA10247_2399 [Burkholderia mallei NCTC 10247] gi|238561937|ref|ZP_00441249.2| Tim44 domain protein [Burkholderia mallei GB8 horse 4] gi|251767560|ref|ZP_02267708.2| Tim44 domain protein [Burkholderia mallei PRL-20] gi|52428415|gb|AAU49008.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344] gi|121228223|gb|ABM50741.1| conserved hypothetical protein [Burkholderia mallei SAVP1] gi|124292552|gb|ABN01821.1| conserved hypothetical protein [Burkholderia mallei NCTC 10229] gi|126243197|gb|ABO06290.1| conserved hypothetical protein [Burkholderia mallei NCTC 10247] gi|238523657|gb|EEP87094.1| Tim44 domain protein [Burkholderia mallei GB8 horse 4] gi|243062328|gb|EES44514.1| Tim44 domain protein [Burkholderia mallei PRL-20] Length = 323 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57 F M + +I L A ++ + + G ++P G +S+ Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 160 Query: 58 GIITLGKGKKKDNLDSINELFPI---GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 G + + G +V FD + FL A+ + + Sbjct: 161 QRPAAPGGAFPGSGSAYAGEAQRVFGGAAAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 220 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ EG + I + ++ + L R + ++ +V + D +++ Sbjct: 221 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 277 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++R G + ++W + + W+L + Sbjct: 278 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 320 >gi|291615430|ref|YP_003525587.1| import inner membrane translocase subunit Tim44 [Sideroxydans lithotrophicus ES-1] gi|291585542|gb|ADE13200.1| import inner membrane translocase subunit Tim44 [Sideroxydans lithotrophicus ES-1] Length = 275 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 21/183 (11%), Positives = 57/183 (31%), Gaps = 24/183 (13%) Query: 48 KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107 + + G ++ + P+ + TDF + FL A Sbjct: 116 RRKQEPAMQYAGAAAPYGGTQEPAQAYGGYAPVAAAG---------IPTDFPVESFLRSA 166 Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167 + S+ + + + I + ++ + + + R + + V + + ++ Sbjct: 167 KTSFIRLQAANDRKDLDDIREYTTPEMFAEVSMQIRER---GDAPQKTDVDVVNADLLEV 223 Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 E + ++R+ GQ + + +IW +N+ W+L Sbjct: 224 VTENDYAIASVRMSGQL----RENNG--------TPESFDEIWHVQKNLKDDKSVWLLAG 271 Query: 228 TKL 230 + Sbjct: 272 IQQ 274 >gi|53718281|ref|YP_107267.1| hypothetical protein BPSL0638 [Burkholderia pseudomallei K96243] gi|52208695|emb|CAH34631.1| putative membrane protein [Burkholderia pseudomallei K96243] Length = 323 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57 F M + +I L A ++ + + G ++P G +S+ Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 160 Query: 58 GIITLGKGKKKDNLDSINELFPI---GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 G + + G +V FD + FL A+ + + Sbjct: 161 QRPAAPGGAFPGSGSAYAGEAQRVFGGAAAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 220 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ EG + I + ++ + L R + ++ +V + D +++ Sbjct: 221 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 277 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++R G + ++W + + W+L + Sbjct: 278 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 320 >gi|121608297|ref|YP_996104.1| import inner membrane translocase subunit Tim44 [Verminephrobacter eiseniae EF01-2] gi|121552937|gb|ABM57086.1| import inner membrane translocase, subunit Tim44 [Verminephrobacter eiseniae EF01-2] Length = 321 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 23/230 (10%), Positives = 71/230 (30%), Gaps = 28/230 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII--TLGKGKKKDN 70 I L A + + V+ R VL + G G S + + + + + Sbjct: 106 IALLAMLAYAVY---RMVLRARQGGAGGSGLALQGAGASSPQAAQAPVQYSPHNVGNDAS 162 Query: 71 LDSINELFPIGTRLNKVM--------RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 G + + V FD FL A+ ++ + ++ Sbjct: 163 ARPWEGSGMAGRQPAAGVVIGSGLAGAQNWGVPEGFDTDGFLAAAKRNFVTLQAAWDRSD 222 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNE--KNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + + ++ + + L+ R++ ++ ++ V I + +++ + + ++ Sbjct: 223 ISTLRSMMTDDMLGEIRAQLAEREAQHGAQSQQTEAVMI-EARLLGIEDQADCYMASVEF 281 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ ++W ++ + W++ + Sbjct: 282 S-----------GMIREEPSAGASPFREVWNMTKS-KAGSTGWLVAGVQA 319 >gi|254689480|ref|ZP_05152734.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 6 str. 870] gi|256257728|ref|ZP_05463264.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 9 str. C68] Length = 134 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 4/120 (3%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I + A+ KL + L S K + V + + A E N Sbjct: 18 IQGGYGREDYAALRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNV 77 Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 Y T+ + I D+ ++ +P + +++WTF R + W L + + E Sbjct: 78 EYATVAMRYSAIDVMVDRTSGAVVEGNPNEPVESVELWTFTRTDGGA---WQLAAIQGTE 134 >gi|254203707|ref|ZP_04910067.1| Tim44 domain protein [Burkholderia mallei FMH] gi|147745219|gb|EDK52299.1| Tim44 domain protein [Burkholderia mallei FMH] Length = 343 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57 F M + +I L A ++ + + G ++P G +S+ Sbjct: 125 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 180 Query: 58 GIITLGKGKKKDNLDSINELFPI---GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 G + + G +V FD + FL A+ + + Sbjct: 181 QRPAAPGGAFPGSGSAYAGEAQRVFGGAAAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 240 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ EG + I + ++ + L R + ++ +V + D +++ Sbjct: 241 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 297 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++R G + ++W + + W+L + Sbjct: 298 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 340 >gi|144897341|emb|CAM74205.1| Mitochondrial import inner membrane translocase, subunit Tim44 [Magnetospirillum gryphiswaldense MSR-1] Length = 327 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 10/123 (8%) Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA---- 167 E + ++ +G A+ +LV V + L+ ++N V + I Sbjct: 210 EGVQKAWSDGNPVALRQLVTPEVAGWIGEDLARDQANGVRNVVEDVTLLKGDISETWSEN 269 Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 ++ T IT + DN ++ DP + + WTFVR WVL + Sbjct: 270 GMDYATAIIT--FSARD-YMVRLSDNEVVEGDPRNAVETTEAWTFVRGAGG---TWVLSA 323 Query: 228 TKL 230 + Sbjct: 324 IEQ 326 >gi|254176738|ref|ZP_04883395.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399] gi|254208682|ref|ZP_04915030.1| Tim44 domain protein [Burkholderia mallei JHU] gi|254360262|ref|ZP_04976532.1| Tim44 domain protein [Burkholderia mallei 2002721280] gi|147750558|gb|EDK57627.1| Tim44 domain protein [Burkholderia mallei JHU] gi|148029502|gb|EDK87407.1| Tim44 domain protein [Burkholderia mallei 2002721280] gi|160697779|gb|EDP87749.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399] Length = 339 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57 F M + +I L A ++ + + G ++P G +S+ Sbjct: 121 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 176 Query: 58 GIITLGKGKKKDNLDSINELFPI---GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 G + + G +V FD + FL A+ + + Sbjct: 177 QRPAAPGGAFPGSGSAYAGEAQRVFGGAAAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 236 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ EG + I + ++ + L R + ++ +V + D +++ Sbjct: 237 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 293 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++R G + ++W + + W+L + Sbjct: 294 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 336 >gi|17987012|ref|NP_539646.1| transporter [Brucella melitensis bv. 1 str. 16M] gi|17982665|gb|AAL51910.1| transporter [Brucella melitensis bv. 1 str. 16M] Length = 197 Score = 60.3 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 4/120 (3%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I + A+ KL + L S K + V + + A E N Sbjct: 81 IQGGYGREDYAALRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNV 140 Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 Y T+ + I D+ ++ +P + +++WTF R + W L + + E Sbjct: 141 EYATVAMRYSAIDVMVDRTSGAVVEGNPNEPVESVELWTFTRTDGGA---WQLAAIQGTE 197 >gi|302880097|ref|YP_003848661.1| import inner membrane translocase subunit Tim44 [Gallionella capsiferriformans ES-2] gi|302582886|gb|ADL56897.1| import inner membrane translocase subunit Tim44 [Gallionella capsiferriformans ES-2] Length = 281 Score = 60.3 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 53/134 (39%), Gaps = 15/134 (11%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 DF + FL A+ S+ + + ++ I + ++ + + + R + + +++ Sbjct: 159 DFPVESFLRSAKTSFIRLQAANDRKDLNDIREYTTPEMFAEISMQMHERDNTPQT--TNV 216 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 + I+ +++ + E + ++R GQ S + V +IW +N+ Sbjct: 217 IAIN-GELLEVANEGDWAIASVRFTGQL------------SENNGTAENVDEIWHVQKNL 263 Query: 217 PPSNPNWVLISTKL 230 W+L + Sbjct: 264 KDDKAVWLLSGIQQ 277 >gi|169632671|ref|YP_001706407.1| hypothetical protein ABSDF0845 [Acinetobacter baumannii SDF] gi|169151463|emb|CAP00212.1| conserved hypothetical protein; putative exported protein [Acinetobacter baumannii] Length = 326 Score = 60.3 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 71/226 (31%), Gaps = 34/226 (15%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFS--GFFSGKYVFSKRDERGIITLGKGKKKDN 70 +LL A +TFFVF +K G++K + ++ R G + Sbjct: 128 VLLAAAVTFFVF--------RKLGSKKKLAANNPYAPNNGGQNPFGRSAAPTNTGDNTNI 179 Query: 71 LDS-----INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 P G+ + +P FL AR + I + Sbjct: 180 FGQSVGGGAATQAPFGSATTNSGNQLPD---GSEPASFLRVARQRFNHIQSINSASNIEE 236 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 I + + +Y + + + + + ++ M + +A+ E +++R Sbjct: 237 IRRYLTPELYNSMYNDIMENQDQDV---AEFSNLNAMVVDSAT-ENGQYIVSVRF----- 287 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + + +IW FV+ + +WV+ + Sbjct: 288 ------TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 326 >gi|260884014|ref|ZP_05895628.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 9 str. C68] gi|260873542|gb|EEX80611.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 9 str. C68] Length = 139 Score = 60.3 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 4/120 (3%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I + A+ KL + L S K + V + + A E N Sbjct: 23 IQGGYGREDYAALRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNV 82 Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 Y T+ + I D+ ++ +P + +++WTF R + W L + + E Sbjct: 83 EYATVAMRYSAIDVMVDRTSGAVVEGNPNEPVESVELWTFTRTDGGA---WQLAAIQGTE 139 >gi|27380918|ref|NP_772447.1| hypothetical protein bll5807 [Bradyrhizobium japonicum USDA 110] gi|27354084|dbj|BAC51072.1| bll5807 [Bradyrhizobium japonicum USDA 110] Length = 333 Score = 60.3 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 68/229 (29%), Gaps = 36/229 (15%) Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 S +++ + FV +L ++ ++ G G + Sbjct: 133 SSILGLIIQIVLVVFVV-RL-------------AMSWWQRRHTPQAAYANADAGSGPGPQ 178 Query: 68 KDNLDSINELFPIGTR-LNKVMRDIVSVYTDFDPKDFLNEARNSYEA----IVDSFFEGK 122 + N +I V ++E + ++ Sbjct: 179 TSYRSGLGGGLGGFGFGANNAPLEIKPVDY------------EAFERLLGDVQTAWSNED 226 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 V + L + F L ++ K + V + + A E T Y T+ + Sbjct: 227 VAKLHTLATPEMVSYFEQDLGQNRARNVVNKVTNVKLLQGDLAEAWREGETDYATVALRF 286 Query: 183 QFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + D++ +++ E G+V ++WTF R W L + + Sbjct: 287 ALTDKTLDRNTGAVVAGS-EQPGEVTEVWTFARRPGG---TWELSAIQQ 331 >gi|86360020|ref|YP_471910.1| hypothetical protein RHE_PB00141 [Rhizobium etli CFN 42] gi|86284122|gb|ABC93183.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 337 Score = 60.3 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 6/118 (5%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ + +L + L +N + S V + I A E Sbjct: 217 VQTAYGAEDYGTLRRLTTPEAMSYLAEELGENATNGVRNRVSDVKLLQGDIAEAWRENGQ 276 Query: 174 VYITI--RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 Y T+ R D ++S D + +IWTFVR W L + + Sbjct: 277 EYATLAMRYSSIDAMVERDS-GRVVSGDDRRPSESTEIWTFVRKSGAD---WKLAAIQ 330 >gi|328768615|gb|EGF78661.1| hypothetical protein BATDEDRAFT_90410 [Batrachochytrium dendrobatidis JAM81] Length = 430 Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 42/127 (33%), Gaps = 4/127 (3%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137 + + +R V F FL E Y ++++F +G +++ Sbjct: 265 EESEHARTIRAFKQVEPTFSVDAFLKETTQ-YTIPELMEAFLKGDADTLKEWCSEAALAK 323 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV-YITIRIVGQFISASYDKDNLLI 196 ++K S L+ I + I + + V I I Q I ++ ++ Sbjct: 324 LTAGFESQKQQGLVSDSKLLDIRGVDIRQLKLLNDEVPIILIGFTTQEILLFRNRKGEIV 383 Query: 197 SSDPEIF 203 ++ Sbjct: 384 VGSEDVI 390 >gi|323698095|ref|ZP_08110007.1| hypothetical protein DND132_0677 [Desulfovibrio sp. ND132] gi|323458027|gb|EGB13892.1| hypothetical protein DND132_0677 [Desulfovibrio desulfuricans ND132] Length = 282 Score = 59.9 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 21/191 (10%), Positives = 45/191 (23%), Gaps = 19/191 (9%) Query: 35 TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSV 94 +G +P G + + P T Sbjct: 103 SGETRPDVRSDDGTAQRPEARTMDRHEAARRTWDMLGSREPGQRPEPTTPTGTPTGSSLR 162 Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKS 154 FD +FL A+ + + + + + VY D + + ++ Sbjct: 163 ADGFDEAEFLEGAKVLFSRFQQARDKEDYDDLRDFLSDGVYSDAVAA-------GERPRT 215 Query: 155 SLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVR 214 V + + + ++ Q + + +W F R Sbjct: 216 E-VMLVSALLTELHSDNGRTTASVHYDAQLR-----------VGEEGRPVRYRAVWEFDR 263 Query: 215 NIPPSNPNWVL 225 + WVL Sbjct: 264 DDTTPGGLWVL 274 >gi|167909581|ref|ZP_02496672.1| Tim44-like domain protein [Burkholderia pseudomallei 112] Length = 314 Score = 59.9 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57 F M + +I L A ++ + + G ++P G +S+ Sbjct: 96 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 151 Query: 58 GIITLGKGKKKDNLDSINELFPI---GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 G + + G +V FD + FL A+ + + Sbjct: 152 QRQAAPGGAFPGSGSAYAGEAQRVFGGAAATTAAAAAPAVPAGFDTEAFLRNAKVYFVRL 211 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ EG + I + ++ + L R + ++ +V + D +++ Sbjct: 212 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 268 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++R G + ++W + + W+L + Sbjct: 269 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 311 >gi|187479558|ref|YP_787583.1| membrane protein [Bordetella avium 197N] gi|115424145|emb|CAJ50698.1| Putative membrane protein [Bordetella avium 197N] Length = 328 Score = 59.9 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 65/221 (29%), Gaps = 26/221 (11%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 +++FA + F+ +LRG ++P G + + + Sbjct: 127 LIGLVVFAVL--FIVRRLRG-----ASAQRPAMQGAYGGAGSQQAAQTQQPMWREASMPA 179 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + + V FD FL +A+ + I + G V + L Sbjct: 180 AAPVAAAAPAALPKAGEDGNWFVPGD--FDTPRFLQQAKEQFVRIQAIWDSGNVDNLRDL 237 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + + +F L R V + V + + +++ + ++R G Sbjct: 238 LTDDLIAEFKPQLEAR---GNEVNKTEVVLLNAELLGIETVSDGHLASVRFSGMLR---- 290 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + + ++W + W+L + Sbjct: 291 -------EAPGAEAFRFEEVWNLFKPTTGG---WLLAGIQQ 321 >gi|167917595|ref|ZP_02504686.1| Tim44-like domain protein [Burkholderia pseudomallei BCC215] Length = 267 Score = 59.9 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57 F M + +I L A ++ + + G ++P G +S+ Sbjct: 49 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 104 Query: 58 GIITLGKGKKKDNLDSINELFPI---GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 G + + G +V FD + FL A+ + + Sbjct: 105 QRQAAPGGAFPGSGSAYAGEAQRVFGGAAATTAAAAAPAVPAGFDTEAFLRNAKVYFVRL 164 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ EG + I + ++ + L R + ++ +V + D +++ Sbjct: 165 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 221 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++R G + ++W + + W+L + Sbjct: 222 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 264 >gi|126440320|ref|YP_001057720.1| Tim44-like domain-containing protein [Burkholderia pseudomallei 668] gi|126219813|gb|ABN83319.1| Tim44-like domain protein [Burkholderia pseudomallei 668] Length = 324 Score = 59.9 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 27/238 (11%), Positives = 67/238 (28%), Gaps = 30/238 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSG---------KYVFSK 53 F M + +I L A ++ + + G ++P Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGI 160 Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 + + G +F +V FD + FL A+ + Sbjct: 161 QRQAAPGGAFPGSGSAYAGEAQRVFGGAAAATAAAATAPAVPAGFDTEAFLRNAKVYFVR 220 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ EG + I + ++ + L R + ++ +V + D +++ Sbjct: 221 LQAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGE 277 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++R G + ++W + + W+L + Sbjct: 278 HLASVRFHG----LIREAQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 321 >gi|237810871|ref|YP_002895322.1| Tim44 domain protein [Burkholderia pseudomallei MSHR346] gi|237504479|gb|ACQ96797.1| Tim44 domain protein [Burkholderia pseudomallei MSHR346] Length = 323 Score = 59.9 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57 F M + +I L A ++ + + G ++P G +S+ Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 160 Query: 58 GIITLGKGKKKDNLDSINELFPI---GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 G + + G +V FD + FL A+ + + Sbjct: 161 QRQAAPGGAFPGSGSAYAGEAQRVFGGAAAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 220 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ EG + I + ++ + L R + ++ +V + D +++ Sbjct: 221 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 277 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++R G + ++W + + W+L + Sbjct: 278 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 320 >gi|76811089|ref|YP_332258.1| transmembrane protein [Burkholderia pseudomallei 1710b] gi|254261326|ref|ZP_04952380.1| Tim44-like domain protein [Burkholderia pseudomallei 1710a] gi|76580542|gb|ABA50017.1| transmembrane protein [Burkholderia pseudomallei 1710b] gi|254220015|gb|EET09399.1| Tim44-like domain protein [Burkholderia pseudomallei 1710a] Length = 323 Score = 59.9 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57 F M + +I L A ++ + + G ++P G +S+ Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 160 Query: 58 GIITLGKGKKKDNLDSINELFPI---GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 G + + G +V FD + FL A+ + + Sbjct: 161 QRQAAPGGAFPGSGSAYAGEAQRVFGGAAATTAAAAAPAVPAGFDTEAFLRNAKVYFVRL 220 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ EG + I + ++ + L R + ++ +V + D +++ Sbjct: 221 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 277 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++R G + ++W + + W+L + Sbjct: 278 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 320 >gi|254187708|ref|ZP_04894220.1| Tim44-like domain protein [Burkholderia pseudomallei Pasteur 52237] gi|157935388|gb|EDO91058.1| Tim44-like domain protein [Burkholderia pseudomallei Pasteur 52237] Length = 339 Score = 59.9 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57 F M + +I L A ++ + + G ++P G +S+ Sbjct: 121 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 176 Query: 58 GIITLGKGKKKDNLDSINELFPI---GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 G + + G +V FD + FL A+ + + Sbjct: 177 QRQAAPGGAFPGSGSAYAGEAQRVFGGAAATTAAAAAPAVPAGFDTEAFLRNAKVYFVRL 236 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ EG + I + ++ + L R + ++ +V + D +++ Sbjct: 237 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 293 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++R G + ++W + + W+L + Sbjct: 294 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 336 >gi|319945468|ref|ZP_08019728.1| Tim44 domain protein [Lautropia mirabilis ATCC 51599] gi|319741254|gb|EFV93681.1| Tim44 domain protein [Lautropia mirabilis ATCC 51599] Length = 318 Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 74/239 (30%), Gaps = 33/239 (13%) Query: 7 DSGDFLI-LLFAFITFFVFLQLRGVLGKK---------TGNEKPFS----GFFSGKYVFS 52 SG FL+ +L A + F F + GK+ G+ PF+ F+ Sbjct: 98 GSGIFLLMILLAGLAIFAF----RMFGKRLQQQQQAQAAGSGAPFAGNLRDAFNNSGKQG 153 Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 + D + G + P + V FD + F+ +A+ + Sbjct: 154 QNDMFRQNSNAGGLFSQTPAAGAAQAPAADSTVSGYTAAMQVPGGFDTEAFVRQAKVQFV 213 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 + +F + + ++ + N + R S + + +V ++ ++ E Sbjct: 214 RLQAAFDARNADDLREFTSPEMFGELNIDMMQRGSAPQT--TEVVELN-AELTGMHQEGP 270 Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + ++ L+ +IW F R WVL + Sbjct: 271 ILVASVLFS-----------GLIREEPNSPAEPFSEIWNFTRP-ASGASGWVLAGIQQP 317 >gi|152981843|ref|YP_001354800.1| hypothetical protein mma_3110 [Janthinobacterium sp. Marseille] gi|151281920|gb|ABR90330.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 307 Score = 59.5 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 75/228 (32%), Gaps = 24/228 (10%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M S ++ L F F++ ++ K GN + S +S ++ I Sbjct: 102 FASMISTILMVALLGFAAMFIYRMIKN---KSAGN----NAQPSFANGYSAKNSTPDIGS 154 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 G ++ ++ P+ + + + DFD + F+ A+ + + ++ + Sbjct: 155 GLNQQYQQPSALQSAAPMAS--GAAYEAVNELPADFDVESFIRNAKTYFIRLQAAWDKAD 212 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 ++ I + ++ + L R + V + + N +I+ Sbjct: 213 INDIREFTTPEMFAELKLQLQER---GATPNVTDVVTLNGEFYGVETVGNDYIASIKF-- 267 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ +D + W + + N WVL + Sbjct: 268 ---------TGMIREADHAPTEPFSEAWNLSKPVN-GNGGWVLAGIQQ 305 >gi|332716434|ref|YP_004443900.1| hypothetical protein AGROH133_11996 [Agrobacterium sp. H13-3] gi|325063119|gb|ADY66809.1| hypothetical protein AGROH133_11996 [Agrobacterium sp. H13-3] Length = 360 Score = 59.5 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 3/119 (2%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ + KL + LS ++ V + + A EE Sbjct: 243 VQAAYGAEDYGTLRKLTTPEAMSYLAEELSDNATSGVKNDVRDVTLLQGDVAEAWHEEGQ 302 Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 Y T+ + I D+ +I D + + +++WTFVR N NW + + + Sbjct: 303 DYATVAMRYSAIDIMRDRTSGKVIEGDEQHPSEAVEMWTFVR--RGGNDNWQVAAIQAA 359 >gi|260549298|ref|ZP_05823518.1| import inner membrane translocase subunit Tim44 [Acinetobacter sp. RUH2624] gi|260407704|gb|EEX01177.1| import inner membrane translocase subunit Tim44 [Acinetobacter sp. RUH2624] Length = 328 Score = 59.5 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 75/224 (33%), Gaps = 30/224 (13%) Query: 13 ILLFAFITFFVFLQLRGVLG--KKTGNEKPFSGFFSGKYVF---SKRDERGIITLGKGKK 67 +LL A + FFVF + LG KK P++ +G+ F + T G+ Sbjct: 130 VLLAAAVAFFVFRK----LGGKKKLAANNPYAPNSNGQNTFGRSAAPTNSNDNTNIFGQS 185 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 + F T N + +P FL AR + I + I Sbjct: 186 VGGGTATQAPFGGATTSNG-----NQLPDGSEPASFLRVARQRFNHIQSINSASNIEEIR 240 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 + + +Y + + + + + ++ M + +A+ E +++R Sbjct: 241 RYLTPELYNSMYNDIMENQDQDV---AEFSNLNAMVVDSAT-ENGQYIVSVRF------- 289 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + + +IW FV+ + +WV+ + Sbjct: 290 ----TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 328 >gi|241258750|ref|YP_002978634.1| import inner membrane translocase subunit Tim44 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863220|gb|ACS60883.1| import inner membrane translocase subunit Tim44 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 331 Score = 59.5 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 6/122 (4%) Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 + ++ + +L + L +N + S V + I A E+ Sbjct: 210 QVQTAYGAEDYGTLRRLTTLEAMSYLAEELGENATNGVRNRVSDVKLLQGDIAEAWREDG 269 Query: 173 TVYITI--RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 Y T+ R D ++S D + ++WTFVR W L + + Sbjct: 270 QEYATLAMRYSSIDAMVERDS-GRVVSGDDRRPSESTEVWTFVRKSGAD---WKLAAIQG 325 Query: 231 GE 232 E Sbjct: 326 AE 327 >gi|332380812|gb|AEE65659.1| hypothetical protein BPTD_0159 [Bordetella pertussis CS] Length = 334 Score = 59.5 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 69/222 (31%), Gaps = 24/222 (10%) Query: 10 DFLILLFAFITFFVFLQLRGVLGK-KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 +++FA I F+ +LRG G + + + + + +L + Sbjct: 129 LIALVVFAVI--FIVRRLRG--GAPRQAMQGAYGAAGGNRPGQPSQQPMWRESLNPAPAQ 184 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 + + + FD FL +A++ + I + G+V ++ Sbjct: 185 QPAAAPAAAAAALPKAGDDGNWFIPGD--FDTPRFLQQAKDQFVRIQGIWDSGEVESLRD 242 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 + + + L R + + L+ +++ + ++R G Sbjct: 243 FLTDDLISELKPQLEARGAAANKTEVVLLN---AELLGIETVSDGHLASVRFSGMLR--- 296 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + + ++W P++ W+L + Sbjct: 297 --------EAPGTEAFRFEEVWNL---FKPADGGWLLAGIQQ 327 >gi|322390169|ref|ZP_08063701.1| hypothetical protein HMPREF8577_1171 [Streptococcus parasanguinis ATCC 903] gi|321143129|gb|EFX38575.1| hypothetical protein HMPREF8577_1171 [Streptococcus parasanguinis ATCC 903] Length = 327 Score = 59.5 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 10/167 (5%) Query: 50 VFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN 109 D + G K+ + + +R I + FD FL++ + Sbjct: 101 AKEANDSDESFSSNSGPKRTTEERAGRPIE---NNYEAIRRIRKLDPMFDEDRFLSQVKL 157 Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN-AS 168 Y + ++ E +++ L + +Y+ L + V ++D KI + Sbjct: 158 VYLQLQSAWTEKDWNSVRNLESTSLYEQHLTQLQEHIRAKTTNVLERVRVEDSKIKDFIE 217 Query: 169 IEENTVYITIRIVGQFISASY-DKDNLLISSDPEIFGKVIDIWTFVR 214 E I + + D+ +I DP D++T R Sbjct: 218 NPEGNDRIEVILSSTMRDYIRNDETGRVIEGDP-----TKDLFTVYR 259 >gi|226196729|ref|ZP_03792309.1| Tim44 domain protein [Burkholderia pseudomallei Pakistan 9] gi|225931260|gb|EEH27267.1| Tim44 domain protein [Burkholderia pseudomallei Pakistan 9] Length = 323 Score = 59.5 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57 F M + +I L A ++ + + G ++P G +S+ Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 160 Query: 58 GIITLGKGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 G + + G +V FD + FL A+ + + Sbjct: 161 QRQAAPGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 220 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ EG + I + ++ + L R + ++ +V + D +++ Sbjct: 221 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAG--TNQTDVVQL-DAELLAVEDRGGEH 277 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++R G + ++W + + W+L + Sbjct: 278 LASVRFHG----LIREAQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 320 >gi|33591411|ref|NP_879055.1| hypothetical protein BP0162 [Bordetella pertussis Tohama I] gi|33571053|emb|CAE40541.1| putative membrane protein [Bordetella pertussis Tohama I] Length = 340 Score = 59.5 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 36/231 (15%) Query: 10 DFLILLFAFITFFVFLQLRGVLGK----------KTGNEKPFSGFFSGKYVFSKRDERGI 59 +++FA I F+ +LRG G G +P + S Sbjct: 129 LIALVVFAVI--FIVRRLRG--GAPRQAMQGAYGAAGGNRPGQPSQQPMWRESLNPAPAQ 184 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + P + DFD FL +A++ + I + Sbjct: 185 QPAAAPVAAAAPAAAAAALPKAGDDGNWF-----IPGDFDTPRFLQQAKDQFVRIQGIWD 239 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 G+V ++ + + + L R + + L+ +++ + ++R Sbjct: 240 SGEVESLRDFLTDDLISELKPQLEARGAAANKTEVVLLN---AELLGIETVSDGHLASVR 296 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G + + ++W P++ W+L + Sbjct: 297 FSGMLR-----------EAPGTEAFRFEEVWNL---FKPADGGWLLAGIQQ 333 >gi|33598497|ref|NP_886140.1| hypothetical protein BPP3994 [Bordetella parapertussis 12822] gi|33574626|emb|CAE39277.1| putative membrane protein [Bordetella parapertussis] Length = 340 Score = 59.5 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 36/231 (15%) Query: 10 DFLILLFAFITFFVFLQLRGVLGK----------KTGNEKPFSGFFSGKYVFSKRDERGI 59 +++FA I F+ +LRG G G +P + S Sbjct: 129 LIALVVFAVI--FIVRRLRG--GAPRQAMQGAYGAAGGNRPGQPSQQPMWRESLNPAPAQ 184 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + P + DFD FL +A++ + I + Sbjct: 185 QPAAAPVAAAAPAAAAAALPKAGDDGNWF-----IPGDFDTPRFLQQAKDQFVRIQGIWD 239 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 G+V ++ + + + L R + + L+ +++ + ++R Sbjct: 240 SGEVESLRDFLTDDLISELKPQLEARGAAANKTEVVLLN---AELLGIETVSDGHLASVR 296 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G + + ++W P++ W+L + Sbjct: 297 FSGMLR-----------EAPGTEAFRFEEVWNL---FKPADGGWLLAGIQQ 333 >gi|209552377|ref|YP_002284292.1| import inner membrane translocase subunit Tim44 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539489|gb|ACI59421.1| import inner membrane translocase subunit Tim44 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 332 Score = 59.5 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 6/121 (4%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ + +L + L +N + S V + I A E+ Sbjct: 212 VQTAYGAEDYATLRRLTTPEAMSYLAEELGENATNGVRNRVSDVKLLQGDIAEAWREDGQ 271 Query: 174 VYITI--RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 Y T+ R + ++S D + ++WTFVR W L + + Sbjct: 272 EYATLAMRYSSIDAMVERNS-GRVVSGDDRRPSESTEVWTFVRKPGAD---WKLAAIQGS 327 Query: 232 E 232 E Sbjct: 328 E 328 >gi|294891975|ref|XP_002773832.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239879036|gb|EER05648.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 497 Score = 59.5 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 51/129 (39%), Gaps = 4/129 (3%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T + + +R++ F + + N +I+ F EG ++ + N Sbjct: 334 TEIAQSIREMKETDPHFRLSQLVEDVENVVAPSIIRWFLEGDAEDLKLHCGEAAFAAVNA 393 Query: 141 SLSTRKSNEKNVKSSLV-GIDDMKIINASIEE--NTVYITIRIVGQFISASYDKDNLLIS 197 S+ R++ + ++ +++ G +D+++ A ++ Q I+ ++ ++ Sbjct: 394 SIDARRNQKLSLDPTILQGPEDLELKGAKSGGEVDSPCFIFTFSTQQINCLRNEAGEVVE 453 Query: 198 SDPEIFGKV 206 + +V Sbjct: 454 GAIDDIRQV 462 >gi|217420068|ref|ZP_03451574.1| Tim44 domain protein [Burkholderia pseudomallei 576] gi|217397372|gb|EEC37388.1| Tim44 domain protein [Burkholderia pseudomallei 576] Length = 339 Score = 59.1 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57 F M + +I L A ++ + + G ++P G +S+ Sbjct: 121 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 176 Query: 58 GIITLGKGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 G + + G +V FD + FL A+ + + Sbjct: 177 QRQAAPGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 236 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ EG + I + ++ + L R + ++ +V + D +++ Sbjct: 237 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAG--TNQTDVVQL-DAELLAVEDRGGEH 293 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++R G + ++W + + W+L + Sbjct: 294 LASVRFHG----LIREAQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 336 >gi|167749610|ref|ZP_02421737.1| hypothetical protein EUBSIR_00568 [Eubacterium siraeum DSM 15702] gi|167657363|gb|EDS01493.1| hypothetical protein EUBSIR_00568 [Eubacterium siraeum DSM 15702] Length = 321 Score = 59.1 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 54/159 (33%), Gaps = 3/159 (1%) Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 + G + +++ N + P T + + I +F D + + Y I +++ + Sbjct: 102 SGGGTTRPSSMNGANVVLPNRTEQIEGI--IKQKDPNFSASDLITFTKQVYIDIENAWCK 159 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + + ++ +Y + + + ID + + + Y+T + Sbjct: 160 RDMTPVRPVMHENLYNTTCKQVQAKIEQGVVYHYESIAIDTAYLTSYERDSQFEYVTAYL 219 Query: 181 VGQFISASYD-KDNLLISSDPEIFGKVIDIWTFVRNIPP 218 + I D K +I D FVR++ Sbjct: 220 TSRMIDYQVDEKTGKIIRGDKTTRWVQKYKMKFVRSLGV 258 >gi|220925671|ref|YP_002500973.1| import inner membrane translocase subunit Tim44 [Methylobacterium nodulans ORS 2060] gi|219950278|gb|ACL60670.1| import inner membrane translocase subunit Tim44 [Methylobacterium nodulans ORS 2060] Length = 318 Score = 59.1 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 13/128 (10%) Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164 +++E + ++ V + +L + F + L + + S V + + Sbjct: 196 DAFERTLTQVQLAYGAEDVATLRRLATPEMVGYFTEELQANAARGVINRISDVKLQQGDL 255 Query: 165 INASIEENTVYITI--RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222 A E T Y T+ R + ++ ++ + DPE ++WTF R+ Sbjct: 256 SEAWREGPTDYATVAMRYTLRDVTVERGSGRVVGTGDPEAV----EVWTFRRDRGGP--- 308 Query: 223 WVLISTKL 230 W+L + + Sbjct: 309 WLLSAIQQ 316 >gi|302187827|ref|ZP_07264500.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. syringae 642] Length = 280 Score = 59.1 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 64/221 (28%), Gaps = 37/221 (16%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F IL+ I F+ + ++ ++P Y G Sbjct: 95 LFDILIMGLIA-FLIFRFIA---RRRQQQQPKMAAAGAPYQRETSQPAQNPVFGSSSPAS 150 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 IN FD + FL+ AR ++++ + ++ I + Sbjct: 151 AAPVINAPA------------------WFDEQRFLDAARGHFQSLQQHWDANEMDKIAEF 192 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V ++ Q R +S+ + +++ + T+ G ++ + Sbjct: 193 VTPQMLQFLK---KERADLGDGFQSTYIENLQVQLDGVDDRADKTIATLTFSGVSKTSRF 249 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D + S W R + P W++ + Sbjct: 250 D-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 278 >gi|254181778|ref|ZP_04888375.1| Tim44-like domain protein [Burkholderia pseudomallei 1655] gi|184212316|gb|EDU09359.1| Tim44-like domain protein [Burkholderia pseudomallei 1655] Length = 323 Score = 59.1 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPF-----SGFFSGKYVFSKRDER 57 F M + +I L A ++ + + G ++P G +S+ Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPALNRGHDGYSQDAGV 160 Query: 58 GIITLGKGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 G + + G +V FD + FL A+ + + Sbjct: 161 QRPAAPGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 220 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ EG + I + ++ + L R + ++ +V + D +++ Sbjct: 221 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 277 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++R G + ++W + + W+L + Sbjct: 278 LASVRFHG----LIREAQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 320 >gi|209884542|ref|YP_002288399.1| import inner membrane translocase, subunit Tim44 [Oligotropha carboxidovorans OM5] gi|209872738|gb|ACI92534.1| import inner membrane translocase, subunit Tim44 [Oligotropha carboxidovorans OM5] Length = 320 Score = 59.1 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 48/127 (37%), Gaps = 9/127 (7%) Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164 ++E + ++ A++ + + + L+ + K S V + + Sbjct: 196 EAFERRLSEVQAAWSNEDTAALQTIATPEMASYLSQDLADNAARGVVNKVSDVKLLQGDL 255 Query: 165 INASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223 A E T Y T+ + + + D+ ++ + +V +IWTF R + +W Sbjct: 256 AEAWREGPTDYATVAMRFSLVDKTIDRASGRVVEGS-DTPEEVTEIWTFARR---PDTDW 311 Query: 224 VLISTKL 230 L + + Sbjct: 312 ELSAIQQ 318 >gi|256828118|ref|YP_003156846.1| import inner membrane translocase subunit Tim44 [Desulfomicrobium baculatum DSM 4028] gi|256577294|gb|ACU88430.1| import inner membrane translocase subunit Tim44 [Desulfomicrobium baculatum DSM 4028] Length = 283 Score = 59.1 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 45/136 (33%), Gaps = 14/136 (10%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD ++FL+ A+ +Y + ++ + + + + V+ + + K + Sbjct: 161 GFDAREFLDGAKAAYTRLQAAWDARDLDDLRQFTSTEVFAEIQSQAEADPNPGKT-EILF 219 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 + + ++ N T+ D + +V + W F R Sbjct: 220 L---EASLLEVKAVGNQTIATVLFDTMLR---EDSTSAPAE-------QVREAWHFSRYE 266 Query: 217 PPSNPNWVLISTKLGE 232 +WV+ + E Sbjct: 267 TGGAKHWVVEGIQQLE 282 >gi|326934094|ref|XP_003213130.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like [Meleagris gallopavo] Length = 341 Score = 59.1 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 12/145 (8%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 +R + +F K F A+ Y +S + LV R Y D R Sbjct: 165 ALRKVKDHDPNFSTKTFPEMAQEIYVEAHNSLANFNKQKLHSLVTERCYPDMV-----RG 219 Query: 147 SNEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSD 199 + K ++ S V + ++ + N +T+R+ + A YD+ L+ Sbjct: 220 NRYKTIRWSFVESLEPPRVVHVRCTSIVNRGNLYGQVTVRMHSRQTLAIYDRFGRLMYGG 279 Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWV 224 ++ V++ F R + W Sbjct: 280 EQLPKDVLEYVVFERYLVNPYGTWR 304 >gi|320164944|gb|EFW41843.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 499 Score = 58.7 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 70/158 (44%), Gaps = 4/158 (2%) Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDF-LNEARNSYEAIVDSFFEGKVHAIEKLV 130 DSI+ +F + + V+ +I V +F+ +F ++ + ++++ F+ + A+E+ Sbjct: 332 DSISNIFSP-SEIGMVIGEINRVDPNFNVDEFTIDCEKQIIPILMEAVFKSDLKALEQWC 390 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 ++ + + +R++ ++ ++ ++ +++ A + E + Q+ + Sbjct: 391 HEVCFRRLLEPIKSRRALGVQLEHKVMELNGVELRTAQLMEQGPTLVFIFNMQYTRVLRN 450 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSN--PNWVLI 226 + +I DP+ R++ + +W +I Sbjct: 451 SSSEIIEGDPDQILAATYAMALTRDLNVYDTHASWRVI 488 >gi|298489454|ref|ZP_07007465.1| putative membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156028|gb|EFH97137.1| putative membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330890590|gb|EGH23251.1| Tim44-like domain-containing protein [Pseudomonas syringae pv. mori str. 301020] Length = 280 Score = 58.7 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 63/221 (28%), Gaps = 37/221 (16%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F IL+ I F+ + ++ ++P Y G Sbjct: 95 LFDILIMGLIA-FLIFRFIA---RRRQQQQPKMAAAGAPYQRESSQPAQNPIFGSSSPAS 150 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 IN F+ + FL AR ++++ + ++ I + Sbjct: 151 AAPVINAPA------------------WFNEERFLEAARGHFQSLQQHWDANEMDKIAEF 192 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V ++ Q R +S+ + +++ + T+ G S+ + Sbjct: 193 VTPQMLQFLK---KERADLGDGFQSTYIDNLQVQLDGVDDRADKTIATLTFSGVSKSSRF 249 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D + S W R + P W++ + Sbjct: 250 D-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 278 >gi|254251433|ref|ZP_04944751.1| hypothetical protein BDAG_00618 [Burkholderia dolosa AUO158] gi|124894042|gb|EAY67922.1| hypothetical protein BDAG_00618 [Burkholderia dolosa AUO158] Length = 341 Score = 58.7 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 73/238 (30%), Gaps = 34/238 (14%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I L A + ++ + ++ +P +S S + Sbjct: 124 FAGMMANFIVIALLAMVGIWLIRKFMN---RR----RPQEPAYSVGGASSSGSYSQGSSF 176 Query: 63 GKGKKKDNLDSINELFPIG----------TRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 G + + V + V FD + FL A+ + Sbjct: 177 QPGSSSNYAGGSSYANEAQRVFGGGAASAAPAAGVAAPALQVPAGFDTEAFLRSAKVYFV 236 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 + ++ +G + I + ++ + L +R + ++ +V + D +++ Sbjct: 237 RLQAAWDQGNLTDIREFTTPEMFAEIKIDLDSR--GNEANQTDVVQL-DAELVAIEDRGI 293 Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R G I S + ++W + + W+L + Sbjct: 294 EQSASVRFHG-LIRESANASAEPFD----------EVWNLSK---SGSQGWLLAGIQQ 337 >gi|190894520|ref|YP_001984813.1| putative import inner membrane translocase, TIM family [Rhizobium etli CIAT 652] gi|190700181|gb|ACE94263.1| putative import inner membrane translocase protein, TIM family [Rhizobium etli CIAT 652] Length = 333 Score = 58.7 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 6/118 (5%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ + +L + L +N + S V + I A E+ Sbjct: 213 VQTAYGAEDYGTLRRLTTPEAMSYLAEELGENATNGVRNRVSDVKLLQGDIAEAWREDGQ 272 Query: 174 VYITI--RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 Y T+ R D ++S D + +IWTFVR W L + + Sbjct: 273 EYATLAMRYSSIDAMVERDS-GRVVSGDDRRPSESTEIWTFVRKPGGD---WKLAAIQ 326 >gi|239905745|ref|YP_002952484.1| hypothetical protein DMR_11070 [Desulfovibrio magneticus RS-1] gi|239795609|dbj|BAH74598.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 315 Score = 58.7 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 14/135 (10%) Query: 96 TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155 FD DFL A+ + + S+ + + IE F + + + + + Sbjct: 192 PGFDAADFLAGAKALFARMQQSWSKRDLADIEAFATP----AFMADVRKQAAEDPTPAPT 247 Query: 156 LVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRN 215 V + D K++ + + + PE V ++W F R Sbjct: 248 DVLLVDAKLLEVRSQGGATIASAYFDVLMR-------EDPKAGQPEQ---VREVWHFTRK 297 Query: 216 IPPSNPNWVLISTKL 230 W L + + Sbjct: 298 ETVPGDAWKLDAIQQ 312 >gi|167579860|ref|ZP_02372734.1| Tim44-like domain family protein [Burkholderia thailandensis TXDOH] Length = 324 Score = 58.7 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 27/247 (10%), Positives = 68/247 (27%), Gaps = 50/247 (20%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I L A ++ + F + + + + Sbjct: 105 FASMMANVIVIALLAMAGIWLV--------------RKFMNRRGAQQQPAYAGGQPSLNR 150 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT-------------------DFDPKDF 103 G + + + P G FD + F Sbjct: 151 DHGGYNQDAGAWRQAAPNGAFAGSGSTYAGEAQRVFGGAATAAAPAAAPMVPAGFDTEAF 210 Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163 L A+ + + ++ EG + I + ++ + L R +N ++ +V + D + Sbjct: 211 LRNAKVYFVRLQAAWDEGNLADIREFTTPEMFAEVKIDLDGR-GAGEN-QTDVVRL-DAE 267 Query: 164 IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223 ++ + ++R G + ++W + + W Sbjct: 268 LLAVEDRGGEHFASVRFHG----MIRETQGAAAE-------PFDEVWNLSK---SGSQGW 313 Query: 224 VLISTKL 230 +L + Sbjct: 314 LLAGIQQ 320 >gi|134296928|ref|YP_001120663.1| import inner membrane translocase subunit Tim44 [Burkholderia vietnamiensis G4] gi|134140085|gb|ABO55828.1| import inner membrane translocase, subunit Tim44 [Burkholderia vietnamiensis G4] Length = 341 Score = 58.7 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 72/236 (30%), Gaps = 28/236 (11%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I L A + ++ + ++ +E +S S Sbjct: 122 FASMMANVIVIALLAMVGIWLIRKFMN---RRRPHEPAYSAGGSASSAGGYAQGSSFQQG 178 Query: 63 GKGKKKDNLDSINELFP--------IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 G + S + + V FD + FL A+ + + Sbjct: 179 SGGNYAGSGSSYANEAQSVFGGGAAAAGAAGALGAAPLQVPAGFDTEAFLRSAKVYFVRL 238 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ +G + I + ++ + L +R + ++ +V + D +++ Sbjct: 239 QAAWDQGNMADIREFTTPEMFAEIKIDLDSR--GNEANQTDVVQL-DAELVAIEDRGIEQ 295 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R G I S + ++W ++ W+L + Sbjct: 296 AASVRFHG-LIRESANASAAPFE----------EVWNLSKSGGQG---WLLAGIQQ 337 >gi|262369516|ref|ZP_06062844.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262315584|gb|EEY96623.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 321 Score = 58.7 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 71/230 (30%), Gaps = 37/230 (16%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEK-----PFSGFFSGKYVF-----SKRDERGII 60 ILL A + FF+F +K G +K P++ + R Sbjct: 117 IWILLAAAVAFFIF--------RKMGAKKKVAANPYAPNNGSTQAPFGQQAAPRTSNDNS 168 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 + + + P G + +P FL AR + I Sbjct: 169 NIFGQSVGGSAATPQNNAPFGAAYTNSGSQLPD---GTEPAAFLRIARQRFNHIQSMNTA 225 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + I++ + +YQ + + + + ++ + +++ E + +++R Sbjct: 226 SNISEIQRYLTPDLYQSMYQDIMANQDQDV---AEFSNLN-AMVADSATENSQYVVSVRF 281 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + + ++W FV+ + +W++ + Sbjct: 282 -----------TGTVSEDLNSLPQPFAEVWHFVKPAGSTQ-DWLVAGIQQ 319 >gi|167617935|ref|ZP_02386566.1| Tim44-like domain family protein [Burkholderia thailandensis Bt4] Length = 252 Score = 58.7 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 74/241 (30%), Gaps = 38/241 (15%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I L A +R + ++ ++P ++G RD G Sbjct: 33 FASMMANVIVIALLAMAG---IWLVRKFMNRRGAQQQP---AYAGGQPSLNRDHGGY--N 84 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDI-------------VSVYTDFDPKDFLNEARN 109 + G+ + + V FD + FL A+ Sbjct: 85 QDAGAWRQAAPNDAFAGSGSTYAGEAQRVFGGAATAAAPAAAPMVPAGFDTEAFLRNAKV 144 Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 + + ++ EG + I + ++ + L R +N ++ +V + D +++ Sbjct: 145 YFVRLQAAWDEGNLADIREFTTPEMFAEVKIDLDGR-GAGEN-QTDVVRL-DAELLAVED 201 Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + ++R G + ++W + + W+L + Sbjct: 202 RGGEHFASVRFHG----MIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQ 247 Query: 230 L 230 Sbjct: 248 Q 248 >gi|91778033|ref|YP_553241.1| hypothetical protein Bxe_B2096 [Burkholderia xenovorans LB400] gi|91690693|gb|ABE33891.1| Putative membrane protein [Burkholderia xenovorans LB400] Length = 318 Score = 58.7 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 67/225 (29%), Gaps = 29/225 (12%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 ++ +++ A + F F+ +P + G + + + + Sbjct: 119 NALLIGLVVVAGVMLFRFI---------ANRRRPDLAYGHGPANRQQTNGAPFLNQVREA 169 Query: 67 KKD-NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + D NL T ++ FL A+ + + ++ + Sbjct: 170 RPDTNLRDWPRTTMDATGAASSVKAPELAD----QAAFLVSAKAMFMRLQGAWDRNEQGD 225 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + +L ++ L R + V + +++N + +++R GQ Sbjct: 226 LFELTTPEMFARLKQDLEIR---GHEPSRTDVTQLEAEVLNTESSADETLVSVRFYGQMR 282 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D +I +IW VR + W L + Sbjct: 283 -----------EDDAQIVQPFQEIWNMVRR-AHGDEGWRLAGIQQ 315 >gi|83311911|ref|YP_422175.1| hypothetical protein amb2812 [Magnetospirillum magneticum AMB-1] gi|82946752|dbj|BAE51616.1| Uncharacterized protein conserved in bacteria [Magnetospirillum magneticum AMB-1] Length = 347 Score = 58.7 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 59/188 (31%), Gaps = 19/188 (10%) Query: 51 FSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNS 110 F R + + + + + + G + +FD + + Sbjct: 173 FRGRSQPAVPAGNPYMRTAPGEHVEPMIGAGPVQ-------PRIEREFDAS---GGDQEA 222 Query: 111 YEAIV----DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN 166 + I+ ++ +G + +++ V ++ +S S K V + + Sbjct: 223 FTEILQGVQKAWSDGNLLQLKRFATPEVVAFLSEDMSRNASEGVANKVENVTLLRGDVSE 282 Query: 167 ASIEENTVYIT--IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 + E Y+T + D + +P + WTFVR + W+ Sbjct: 283 SWSEGGFDYLTAILTFSCNDYMVRLD-TGAVADGNPHATVTHTEAWTFVR--SSNGGRWL 339 Query: 225 LISTKLGE 232 L + + + Sbjct: 340 LSAVQQVQ 347 >gi|167822777|ref|ZP_02454248.1| Tim44-like domain protein [Burkholderia pseudomallei 9] Length = 225 Score = 58.7 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57 F M + +I L A ++ + + G ++P G +S+ Sbjct: 7 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 62 Query: 58 GIITLGKGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 G + + G +V FD + FL A+ + + Sbjct: 63 QRQAAPGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 122 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ EG + I + ++ + L R + ++ +V + D +++ Sbjct: 123 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAG--TNQTDVVQL-DAELLAVEDRGGEH 179 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++R G + ++W + + W+L + Sbjct: 180 LASVRFHG----LIREAQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 222 >gi|296160985|ref|ZP_06843796.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. Ch1-1] gi|295888684|gb|EFG68491.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. Ch1-1] Length = 330 Score = 58.7 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 65/193 (33%), Gaps = 16/193 (8%) Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK-VMRDIVSVYTD 97 + S G + + + + + L P G L+ + +V Sbjct: 149 RKRDTAQPAYAGGSPSLNSGGMGYSQEPRYSAPPTGSYLEPQGNPLSTPTINAAPAVPAG 208 Query: 98 FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157 FD + FL A+ + + ++ G I + ++ + LS+R + + ++ +V Sbjct: 209 FDSEAFLRNAKVYFVRLQAAWDVGNTEDIREFTTPEMFAEVKVDLSSRGA--ETNQTDVV 266 Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217 ++ +++ N + ++R L+ + +++W + Sbjct: 267 QLN-AELLGVEERANEYFASVRFS-----------GLIREAPGAAAEPFVEVWNLSKANR 314 Query: 218 PSNPNWVLISTKL 230 W+L + Sbjct: 315 AGE-GWLLAGIQQ 326 >gi|28872622|ref|NP_795241.1| hypothetical protein PSPTO_5517 [Pseudomonas syringae pv. tomato str. DC3000] gi|302133167|ref|ZP_07259157.1| hypothetical protein PsyrptN_17334 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855878|gb|AAO58936.1| conserved protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] gi|331017794|gb|EGH97850.1| hypothetical protein PLA106_17269 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 280 Score = 58.4 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 64/221 (28%), Gaps = 37/221 (16%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F IL+ I F+ + ++ ++P Y G Sbjct: 95 LFDILIMGLIA-FLIFRFIA---RRRQQQQPKMAAAGAPYQRETSQPAQNPIFGSSSPAS 150 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 IN F+ + FL+ AR ++++ + ++ I + Sbjct: 151 AAPVINAPA------------------WFNEERFLDAARGHFQSLQQHWDANEMDKIAEF 192 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V ++ Q R +S+ + +++ + T+ G ++ + Sbjct: 193 VTPQMLQFLK---KERADLGDGFQSTFIDNLHVQLDGLDDRADKTIATLTFSGVSKTSRF 249 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D + S W R + P W++ + Sbjct: 250 D-QGEVFSES----------WNMERPQGENQP-WLVAGIRQ 278 >gi|237749468|ref|ZP_04579948.1| hypothetical protein OFBG_01949 [Oxalobacter formigenes OXCC13] gi|229380830|gb|EEO30921.1| hypothetical protein OFBG_01949 [Oxalobacter formigenes OXCC13] Length = 305 Score = 58.4 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 77/233 (33%), Gaps = 29/233 (12%) Query: 4 IKMD-----SGDFLILLFAFITFF-VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER 57 M +G +L + FF + +R + TG KP + ++ Sbjct: 94 SHMGIGGDFAGMISTVLMLALIFFAIRFLMR----RFTGRGKP-QDQTAYASQYNDNGYN 148 Query: 58 GIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117 T G + + N+ G+ + I DFD FL A++ Y + + Sbjct: 149 QSSTPEIGSGLPHQYAGNQTVNTGSGMQNDNWGIPV---DFDVPAFLRAAKSYYIRMQAA 205 Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 + + +H I + ++ + L R N+ + +V + D +++ N + Sbjct: 206 WDKADIHDIHEFTTPEMFAEMKLQLQER-GPGPNI-TDVVSL-DAELLGIETLNNEYMAS 262 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ G + + ++W R I WVL + Sbjct: 263 VKFSG----MIRESEGAPAE-------PFAEVWNMTRPI-SKEGGWVLAGIQQ 303 >gi|254504893|ref|ZP_05117044.1| Tim44-like domain family [Labrenzia alexandrii DFL-11] gi|222440964|gb|EEE47643.1| Tim44-like domain family [Labrenzia alexandrii DFL-11] Length = 335 Score = 58.4 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 54/195 (27%), Gaps = 24/195 (12%) Query: 37 NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT 96 E+ + + G D T Sbjct: 160 FERAPNQPAPDQNASQATPFSFGGGGASGSTSQTFDQPATQPYEATAA------------ 207 Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 D F + + ++ A+ +L + L S K S Sbjct: 208 --DLDRF----EDMLSEVQSAYASEDYAALRQLATPEAMSYLAEELGELASAGKKNVVSD 261 Query: 157 VGIDDMKIINASIEENTVYITI--RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVR 214 V + + + E Y+T+ R A D +IS DP+ + ++WTFVR Sbjct: 262 VKLLQGDVAESWNENGNDYVTVAMRYSAVDYIAKRDSH-EVISGDPDAPSESTEVWTFVR 320 Query: 215 NIPPSNPNWVLISTK 229 + W+L + + Sbjct: 321 SSGGD---WLLSAIQ 332 >gi|115352833|ref|YP_774672.1| import inner membrane translocase subunit Tim44 [Burkholderia ambifaria AMMD] gi|115282821|gb|ABI88338.1| import inner membrane translocase, subunit Tim44 [Burkholderia ambifaria AMMD] Length = 344 Score = 58.4 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 72/237 (30%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I L A I +R + ++ E +S S Sbjct: 124 FASMMANVIVIALLAMIG---IWLVRKFMNRRRSQEPAYSVGGSASSSGGYSQSPSFQQG 180 Query: 63 GKGKKKDNLDSINELFPIG---------TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 G S G + + V FD + FL A+ + Sbjct: 181 STGNNYAGSGSSYANEAQGVFGGGAAAAGAAGAMAAAPLQVPAGFDTEAFLRSAKVYFVR 240 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ +G + I + ++ + L +R + ++ +V + D +++ Sbjct: 241 LQAAWDQGNLADIREFTTPEMFAEIKIDLDSR--GNEANQTDVVQL-DAELVAIEDRGIE 297 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R G I S + + ++W + + W+L + Sbjct: 298 QSASVRFHG-LIRESANAPAAPLD----------EVWNLSK---SGSQGWLLAGIQQ 340 >gi|172061690|ref|YP_001809342.1| import inner membrane translocase subunit Tim44 [Burkholderia ambifaria MC40-6] gi|171994207|gb|ACB65126.1| import inner membrane translocase subunit Tim44 [Burkholderia ambifaria MC40-6] Length = 344 Score = 58.4 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 72/237 (30%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I L A I +R + ++ E +S S Sbjct: 124 FASMMANVIVIALLAMIG---IWLVRKFMNRRRSQEPAYSVGGSASSSGGYSQSPSFQQG 180 Query: 63 GKGKKKDNLDSINELFPIG---------TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 G S G + + V FD + FL A+ + Sbjct: 181 STGNNYAGSGSSYANEAQGVFGGGAAAAGAAGAMAAAPLQVPAGFDTEAFLRSAKVYFVR 240 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ +G + I + ++ + L +R + ++ +V + D +++ Sbjct: 241 LQAAWDQGNLADIREFTTPEMFAEIKIDLDSR--GNEANQTDVVQL-DAELVAIEDRGIE 297 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R G I S + + ++W + + W+L + Sbjct: 298 QSASVRFHG-LIRESANAPAAPLD----------EVWNLSK---SGSQGWLLAGIQQ 340 >gi|213968509|ref|ZP_03396652.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|301384751|ref|ZP_07233169.1| hypothetical protein PsyrptM_19042 [Pseudomonas syringae pv. tomato Max13] gi|302062457|ref|ZP_07253998.1| hypothetical protein PsyrptK_20918 [Pseudomonas syringae pv. tomato K40] gi|213926797|gb|EEB60349.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] Length = 280 Score = 58.4 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 64/221 (28%), Gaps = 37/221 (16%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F IL+ I F+ + ++ ++P Y G Sbjct: 95 LFDILIMGLIA-FLIFRFIA---RRRQQQQPKMAAAGAPYQRETSQPAQNPIFGSSSPAS 150 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 IN F+ + FL+ AR ++++ + ++ I + Sbjct: 151 AAPVINAPA------------------WFNEERFLDAARGHFQSLQQHWDANEMDKIAEF 192 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V ++ Q R +S+ + +++ + T+ G ++ + Sbjct: 193 VTPQMLQFLK---KERADLGDGFQSTFIDNLHVQLDGLDDRADKTIATLTFSGVSKTSRF 249 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D + S W R + P W++ + Sbjct: 250 D-QGEVFSES----------WNMERPQGENQP-WLVAGIRQ 278 >gi|257140227|ref|ZP_05588489.1| Tim44-like domain-contain protein [Burkholderia thailandensis E264] Length = 324 Score = 58.4 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 74/241 (30%), Gaps = 38/241 (15%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I L A +R + ++ ++P ++G RD G Sbjct: 105 FASMMANVIVIALLAMAG---IWLVRKFMNRRGAQQQP---AYAGGQPSLNRDHGGY--N 156 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDI-------------VSVYTDFDPKDFLNEARN 109 + G+ + + V FD + FL A+ Sbjct: 157 QDAGAWRQAAPNDAFAGSGSTYAGEAQRVFGGAATAAAPAAAPMVPAGFDTEAFLRNAKV 216 Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 + + ++ EG + I + ++ + L R +N ++ +V + D +++ Sbjct: 217 YFVRLQAAWDEGNLADIREFTTPEMFAEVKIDLDGR-GAGEN-QTDVVRL-DAELLAVED 273 Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + ++R G + ++W + + W+L + Sbjct: 274 RGGEHFASVRFHG----MIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQ 319 Query: 230 L 230 Sbjct: 320 Q 320 >gi|134279597|ref|ZP_01766309.1| Tim44 domain protein [Burkholderia pseudomallei 305] gi|134248797|gb|EBA48879.1| Tim44 domain protein [Burkholderia pseudomallei 305] Length = 323 Score = 58.4 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPF-----SGFFSGKYVFSKRDER 57 F M + +I L A ++ + + G ++P G +S+ Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPALNRGHDGYSQDAGI 160 Query: 58 GIITLGKGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 G + + G +V FD + FL A+ + + Sbjct: 161 QRPAAPGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 220 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ EG + I + ++ + L R + ++ +V + D +++ Sbjct: 221 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 277 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++R G + ++W + + W+L + Sbjct: 278 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 320 >gi|83718851|ref|YP_441111.1| Tim44-like domain-contain protein [Burkholderia thailandensis E264] gi|83652676|gb|ABC36739.1| Tim44-like domain family [Burkholderia thailandensis E264] Length = 340 Score = 58.0 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 74/241 (30%), Gaps = 38/241 (15%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I L A +R + ++ ++P ++G RD G Sbjct: 121 FASMMANVIVIALLAMAG---IWLVRKFMNRRGAQQQP---AYAGGQPSLNRDHGGY--N 172 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDI-------------VSVYTDFDPKDFLNEARN 109 + G+ + + V FD + FL A+ Sbjct: 173 QDAGAWRQAAPNDAFAGSGSTYAGEAQRVFGGAATAAAPAAAPMVPAGFDTEAFLRNAKV 232 Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 + + ++ EG + I + ++ + L R +N ++ +V + D +++ Sbjct: 233 YFVRLQAAWDEGNLADIREFTTPEMFAEVKIDLDGR-GAGEN-QTDVVRL-DAELLAVED 289 Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + ++R G + ++W + + W+L + Sbjct: 290 RGGEHFASVRFHG----MIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQ 335 Query: 230 L 230 Sbjct: 336 Q 336 >gi|71735681|ref|YP_277225.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485679|ref|ZP_05639720.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625508|ref|ZP_06458462.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649763|ref|ZP_06481106.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. aesculi str. 2250] gi|71556234|gb|AAZ35445.1| Tim44-like domain family [Pseudomonas syringae pv. phaseolicola 1448A] gi|320321766|gb|EFW77864.1| Tim44-like domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320331516|gb|EFW87456.1| Tim44-like domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330870932|gb|EGH05641.1| Tim44-like domain-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330880967|gb|EGH15116.1| Tim44-like domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330986943|gb|EGH85046.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011967|gb|EGH92023.1| Tim44-like domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 280 Score = 58.0 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 63/221 (28%), Gaps = 37/221 (16%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F IL+ I F+ + ++ ++P Y G Sbjct: 95 LFDILIMGLIA-FLIFRFIA---RRRQQQQPKMAAAGAPYQRESSQPAQNPIFGSSSPAS 150 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 IN F+ + FL AR ++++ + ++ I + Sbjct: 151 AAPVINAPA------------------WFNEERFLEAARGHFQSLQQHWDANEMDKIAEF 192 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V ++ Q R +S+ + +++ + T+ G S+ + Sbjct: 193 VTPQMLQFLK---KERADLGDGFQSTYIDNLQVQLDGVDDRADKTIATLTFSGVSKSSRF 249 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D + S W R + P W++ + Sbjct: 250 D-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 278 >gi|222081641|ref|YP_002541006.1| hypothetical protein Arad_8042 [Agrobacterium radiobacter K84] gi|221726320|gb|ACM29409.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 331 Score = 58.0 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 8/122 (6%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ + +L + L + + + + I + E+N Sbjct: 211 VQSAYGAEDYATLRRLTTPEAMSYLAEELGENATKGVRNSVTDIRLLQGDIAESWREDNA 270 Query: 174 VYITI--RIVGQFISASYD-KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 Y T+ R + A D K L+ D + +IWTF+R W+L + + Sbjct: 271 EYATLAMRYSS--VDALLDRKTGRLVDGDDRNASETTEIWTFMRKPGSD---WILSAIQG 325 Query: 231 GE 232 E Sbjct: 326 TE 327 >gi|167901351|ref|ZP_02488556.1| Tim44-like domain protein [Burkholderia pseudomallei NCTC 13177] Length = 251 Score = 58.0 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPF-----SGFFSGKYVFSKRDER 57 F M + +I L A ++ + + G ++P G +S+ Sbjct: 33 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPALNRGHDGYSQDAGI 88 Query: 58 GIITLGKGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 G + + G +V FD + FL A+ + + Sbjct: 89 QRPAAPGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 148 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ EG + I + ++ + L R + ++ +V + D +++ Sbjct: 149 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 205 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++R G + ++W + + W+L + Sbjct: 206 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 248 >gi|307726779|ref|YP_003909992.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. CCGE1003] gi|307587304|gb|ADN60701.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. CCGE1003] Length = 322 Score = 58.0 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 24/227 (10%) Query: 5 KMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK 64 +M S ++ + + + N + + + Sbjct: 116 QMLSNML-LIGLVVVAGVMLFRF-------IANRRRPDLAYGHGAASRSQSNGMPFANQN 167 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKV 123 G+ + + + V D + + A++ + + ++ + Sbjct: 168 GQARPDSSFFGSQRTAANQTAAAGVFNAPVQPLGLDQAELVASAKSMFMRLQGAWDRNEQ 227 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 + +L ++ L R + + V D +++ + ++++R GQ Sbjct: 228 GDLFELTTPEMFAQLKRDLEGRGNQPNRTE---VPQLDAEVLGVESTADETFVSVRFYGQ 284 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D ++W VR+ N W L + Sbjct: 285 MR-----------EDDAPTAQPFQEVWNIVRSAHSGN-TWRLAGIQQ 319 >gi|218887945|ref|YP_002437266.1| import inner membrane translocase subunit Tim44 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758899|gb|ACL09798.1| import inner membrane translocase subunit Tim44 [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 308 Score = 58.0 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 71/218 (32%), Gaps = 27/218 (12%) Query: 15 LFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSI 74 L + F+ L+ + G+ P SG+ +R+ G D L + Sbjct: 117 LLLALVAFMALKFFA---ARRGS-APAPASASGQPGGMRREADYGAQSGSSAGWDALRNA 172 Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 + + + FD ++FL A+ +Y + S+ + I + + Sbjct: 173 PAAAADAQPASPGIPE------GFDTEEFLRGAKLAYNRLQTSWDRRDLDDIAQFTTPEI 226 Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNL 194 ++ + + + V + +++ + E++ T+ Sbjct: 227 L----KDITQQAQEDPGPSRTEVLYCNASVLSVTEEKDRSVATVFFDVLMRE-------- 274 Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + + +V ++W FVR N W L + E Sbjct: 275 --DAQADAPSQVREVWHFVR---TGNEMWRLDGIQQVE 307 >gi|118782853|ref|XP_312541.3| AGAP002412-PA [Anopheles gambiae str. PEST] gi|116129764|gb|EAA08051.3| AGAP002412-PA [Anopheles gambiae str. PEST] Length = 335 Score = 58.0 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 75/199 (37%), Gaps = 21/199 (10%) Query: 38 EKPF----SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93 E+PF +G Y+ + D R +G K+ E T+ +R I + Sbjct: 95 ERPFHISCTGGVFEPYIPPEGDGRMSAISREGAKQKI-----EQLEKKTKSMMAIRKIRN 149 Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153 DF+P +F A++ Y + E + + ++V R Y + +++ K ++ Sbjct: 150 YDEDFEPPEFATLAQDIYIEAHKTLCEKNKYKLREIVTERAYPELMHNVAD-----KTIR 204 Query: 154 SSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 + + + + +EN +T+R Q A YD+ L+ + Sbjct: 205 WQFLKSLEPPRVVHARCTDVITKENIFAQVTVRFHSQQTLAIYDRFGRLMHGSETVAKDC 264 Query: 207 IDIWTFVRNIPPSNPNWVL 225 I+ F +++ W L Sbjct: 265 IEYVVFEKHLANEYGVWRL 283 >gi|56753329|gb|AAW24868.1| SJCHGC06217 protein [Schistosoma japonicum] Length = 326 Score = 58.0 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 78/218 (35%), Gaps = 29/218 (13%) Query: 27 LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSI-------NELFP 79 LR L ++ G P + + G + +L S +EL Sbjct: 62 LRRRL-RRNGMLPPLLFYDRPINIGHTGQIFDPYVPPDGDGQTSLLSPKRLTHLKDELVD 120 Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF-----EGKVHAIEKLVDSRV 134 G ++ I S F K F +EA N Y +++ + +LV + Sbjct: 121 KGKNYKDLLL-IRSHEPSFKSKPFASEAENIY---IEAHNLLQNYRQNESRLFELVTEKA 176 Query: 135 YQDFNDSLSTRKSNEKNVKSSLVG-IDDMKIINASIEE------NTVYITIRIVGQFISA 187 D L R ++ VG I+ K+++ +E + +T+R Q I + Sbjct: 177 LVDMTADLRLR-----TLRWKFVGNIEPPKVVHIRCKEYLSKGNHYAQVTVRFYTQQILS 231 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 Y++ L+ +P+ V++ F ++I W L Sbjct: 232 IYNRFGRLLYGNPDTAVDVLEYVVFEKHISDEYGTWRL 269 >gi|262278111|ref|ZP_06055896.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262258462|gb|EEY77195.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 329 Score = 58.0 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 30/206 (14%), Positives = 63/206 (30%), Gaps = 22/206 (10%) Query: 31 LGKK---TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL-DSINELFPIGTRLNK 86 LG K GN P++ G+ F + G + S+ Sbjct: 141 LGAKKKLAGN-NPYAPNNGGQNPFGRSAAPQATPRNAGDNTNIFGQSVTGGAATQAPFGG 199 Query: 87 VMRDIVSVYTDFD-PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145 V + D P FL AR + I + I + + +Y + + Sbjct: 200 VTTSNGNQLPDGSEPAAFLRIARQRFNHIQSMNTASNIEEIRRYLTPELYTSMYNDIMEN 259 Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 + + + ++ M + +A+ E +++R + + Sbjct: 260 QDQDV---AEFSNLNAMVVDSAN-ENGQYVVSVRF-----------TGNVSEDLNSLPQP 304 Query: 206 VIDIWTFVRNIPPSNPNWVLISTKLG 231 +IW FV++ +WV+ + Sbjct: 305 FTEIWHFVKSAGSQQ-DWVVAGIQQA 329 >gi|189184596|ref|YP_001938381.1| hypothetical protein OTT_1689 [Orientia tsutsugamushi str. Ikeda] gi|189181367|dbj|BAG41147.1| hypothetical protein OTT_1689 [Orientia tsutsugamushi str. Ikeda] Length = 211 Score = 58.0 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 34/147 (23%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 + + S F+ F N A N + I+++ I L+D R F Sbjct: 93 LIKLKSKVPSFNINRFYNTAINVIKMIIEAVQNANYKTIFSLLDKRFVDQF--------- 143 Query: 148 NEKNVKSSLVGI--DDMKIINASIE--ENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203 + S V I D + +++ N V+I IRI I + Sbjct: 144 --HQISSKYVNIHVDSINFKLSNLNSLGNNVFIKIRIE--------------IDGN---- 183 Query: 204 GKVIDIWTFVRNIPPSNPNWVLISTKL 230 K+ + WTF +NI P W L + + Sbjct: 184 -KLKEEWTFSKNITTPGPQWYLSNIEE 209 >gi|172087484|ref|XP_001913284.1| import inner membrane translocase subunit TIM44-like protein [Oikopleura dioica] gi|42601412|gb|AAS21436.1| import inner membrane translocase subunit TIM44-like protein [Oikopleura dioica] Length = 388 Score = 58.0 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 61/157 (38%), Gaps = 15/157 (9%) Query: 85 NKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDFNDS 141 N ++ I V FD + F+ + E I +++ V IE Q F + Sbjct: 229 NDTIKAIRQVDKKFDQEAFVQFLES--EMIPIILEAKAINDVAVIEDWCLDAPAQRF--A 284 Query: 142 LSTRKSNEKNVKS--SLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199 + R+ + + + + ++I++ ++ +N I + A DKD +I + Sbjct: 285 IKHREQAKNKITYYEKTINLQKLEILDGTVHDNMPAFQISFETNTLMAYTDKDGNVIEQE 344 Query: 200 ----PEIFGKVIDIWTFVRNIPPSNPN--WVLISTKL 230 P+ K +W+ R+ P+ W ++ + Sbjct: 345 GYPKPDEVYKSYHVWSVCRDPMEPEPSAAWRVLECET 381 >gi|91976179|ref|YP_568838.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisB5] gi|91682635|gb|ABE38937.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisB5] Length = 331 Score = 58.0 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 60/197 (30%), Gaps = 24/197 (12%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 ++ + + Y + G + P L +I Sbjct: 153 QRRKNPQPAPAYASNAGPTVGPGPEPSYRTGFGFGGGGGSAPNAPPL-----EIKPEDY- 206 Query: 98 FDPKDFLNEARNSYEAIVD----SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153 ++E ++ ++ V + +L + F L+ K+ K Sbjct: 207 -----------EAFERLLGDVQSAWSNEDVEKLNQLTTPEMASYFAKDLAENKAANDINK 255 Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213 S V + + + E T Y T+ + + + ++ + S E +V ++WTF Sbjct: 256 VSDVKLLQGDLAESWREGETDYATVAMRFSLVDKTLERGTNRLVSGSETPIEVTEVWTFA 315 Query: 214 RNIPPSNPNWVLISTKL 230 R W L + + Sbjct: 316 RRSGAD---WELSAIQQ 329 >gi|71033659|ref|XP_766471.1| mitochondrial import inner membrane translocase [Theileria parva strain Muguga] gi|68353428|gb|EAN34188.1| mitochondrial import inner membrane translocase, putative [Theileria parva] Length = 381 Score = 58.0 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 51/128 (39%), Gaps = 2/128 (1%) Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAIEKLVDSRVYQDFN 139 T L +R++ + F+ D + + +V+S+ +G A++ + N Sbjct: 224 DTSLASALREMKRLDPSFNLPDLVELVEHVIAPHVVESYLKGDGEALKLHCGEVAFNILN 283 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINA-SIEENTVYITIRIVGQFISASYDKDNLLISS 198 S+ R + + S++ + ++++ ++E ++ Q I+ D + + Sbjct: 284 TSIKERNLQKLVLDPSILILKNVELKGGMKVKEGDPWLIFNFTTQQINCLRDTKGKVCAG 343 Query: 199 DPEIFGKV 206 + +V Sbjct: 344 QIDDIREV 351 >gi|291557689|emb|CBL34806.1| Tim44-like domain [Eubacterium siraeum V10Sc8a] Length = 309 Score = 58.0 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 45/139 (32%), Gaps = 1/139 (0%) Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 R ++ I +F D + + Y I +++ + + + ++ +Y Sbjct: 108 PNRTEQIEGIIKQKDPNFSASDLITFTKQVYIDIENAWCKRDMTPVRPVMHENLYNTTCK 167 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD-KDNLLISSD 199 + + + ID + + + Y+T + + I D K +I D Sbjct: 168 QVQAKIEQGVVYHYESIAIDTAYLTSYERDSQFEYVTAYLTSRMIDYQVDEKTGKIIRGD 227 Query: 200 PEIFGKVIDIWTFVRNIPP 218 FVR++ Sbjct: 228 KTTRWVQKYKMKFVRSLGV 246 >gi|221068939|ref|ZP_03545044.1| import inner membrane translocase subunit Tim44 [Comamonas testosteroni KF-1] gi|220713962|gb|EED69330.1| import inner membrane translocase subunit Tim44 [Comamonas testosteroni KF-1] Length = 332 Score = 58.0 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 74/235 (31%), Gaps = 36/235 (15%) Query: 15 LFAF-ITFFVFLQLRGVLGKK------TGNEKPFS----GFFSGKYVFSKRDERGIITLG 63 L A I V + +R ++ N PF+ G G + + +G Sbjct: 113 LLAMVIMVVVGMIMR----RRKPAPAMQSNHSPFAFQGAGNLGGDANAPQARQYNPEKVG 168 Query: 64 KGKKKDNLD--SINELFPI--GTRLNKVMR--DIVSVYTDFDPKDFLNEARNSYEAIVDS 117 + I E G+ + + V TDFD + FL A+ ++ + + Sbjct: 169 NDASARPWEQNHIPEAAAAAGGSMIGSALSGSQNWGVPTDFDAEGFLTAAKRNFVTLQSA 228 Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKS--NEKNVKSSLVGIDDMKIINASIEENTVY 175 + + + ++ + + LS R+S + + ++ I D +++ N Sbjct: 229 WDRSDITTLRSMMTDEMLSEIRSQLSERESQRAGEPNHTDVLMI-DAQLLGIEDLGNGYM 287 Query: 176 ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ ++ ++W + W++ + Sbjct: 288 ASVEFS-----------GMIREEASAGPSPFREVWNMTKP-KSGASGWLVAGVQA 330 >gi|330970256|gb|EGH70322.1| import inner membrane translocase, subunit Tim44 [Pseudomonas syringae pv. aceris str. M302273PT] Length = 281 Score = 58.0 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 68/221 (30%), Gaps = 36/221 (16%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F IL+ I F+ + + K G + + Sbjct: 95 LFDILIMGLIA-FLIFR---------------FIARRRQQQQPKMAAAGAPPYQRETSQP 138 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + I G+ +++ F+ + FL+ AR ++++ + + ++ I + Sbjct: 139 AQNPI-----FGSSSPASSAPVINAPAWFNEQRFLDAARGHFQSLQEHWDANEMDKIAEF 193 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V ++ Q R +S+ + +++ + T+ G ++ + Sbjct: 194 VTPQMLQFLK---KERADLGDGFQSTFIENLQVQLDGVDDRADKTIATLTFSGVSKTSRF 250 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D + S W R + P W++ + Sbjct: 251 D-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 279 >gi|91781796|ref|YP_557002.1| hypothetical protein Bxe_A4049 [Burkholderia xenovorans LB400] gi|91685750|gb|ABE28950.1| Conserved hypothetical protein [Burkholderia xenovorans LB400] Length = 330 Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 16/166 (9%) Query: 66 KKKDNLDSINELFPIGTRLNK-VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 + + + L P G L+ + +V FD + FL A+ + + ++ G Sbjct: 176 PRYTAPPTGSYLEPQGNPLSTPAINTAPAVPAGFDSEAFLRNAKVYFVRLQAAWDVGNTE 235 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 I + ++ + LS+R + + ++ +V ++ +++ N + ++R Sbjct: 236 DIREFTTPEMFAEVKVDLSSRGA--ETNQTDVVQLN-AELLGVEERANEYFASVRFS--- 289 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 L+ + +++W + W+L + Sbjct: 290 --------GLIREAPGAAAEPFVEVWNLSKANRAGE-GWLLAGIQQ 326 >gi|330952408|gb|EGH52668.1| Tim44-like domain-containing protein [Pseudomonas syringae Cit 7] Length = 280 Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 65/221 (29%), Gaps = 37/221 (16%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F IL+ I F+ + ++ ++P Y G Sbjct: 95 LFDILIMGLIA-FLIFRFIA---RRRQQQQPKMAAAGAPYQRETSQPAQNPIFGSSSPAS 150 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 IN F+ + FL+ AR ++++ + ++ I + Sbjct: 151 AAPVINAPA------------------WFNEQRFLDAARGHFQSLQQHWDANEMDKIAEF 192 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V ++ Q R +S+ + ++++ + T+ G ++ + Sbjct: 193 VTPQMLQFLK---KERADLGDGFQSTYIENLNVQLDGVDDRADKTIATLTFSGVSKTSRF 249 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D + S W R + P W++ + Sbjct: 250 D-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 278 >gi|115920949|ref|XP_793386.2| PREDICTED: similar to MGC53772 protein [Strongylocentrotus purpuratus] gi|115935455|ref|XP_001189066.1| PREDICTED: similar to MGC53772 protein [Strongylocentrotus purpuratus] Length = 338 Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 8/141 (5%) Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY----QDFNDSLST 144 R I +F DF +A+ Y ++ + H + LV + Y F Sbjct: 146 RKIRQFEPEFTTTDFAWKAQQIYVDAHNALQDFDRHLLHSLVTEKCYPEMIAGFRYKTIR 205 Query: 145 RKSNEKNVKSSLVGIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSDPEIF 203 K E K +V + +IN + N +T+R + A YD+ ++ ++ Sbjct: 206 WKMLESIEKPRIVHMRCTDMIN---KGNIYGQVTVRFHTRQTLAIYDRFGRIMVGSEDVL 262 Query: 204 GKVIDIWTFVRNIPPSNPNWV 224 V++ F +++P W Sbjct: 263 KDVLEYVVFEKHLPHRYGTWR 283 >gi|330878142|gb|EGH12291.1| Tim44-like domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 281 Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 67/221 (30%), Gaps = 36/221 (16%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F IL+ I F+ + + K G + + Sbjct: 95 LFDILIMGLIA-FLIFR---------------FIARRRQQQQPKMAAAGAPPYQRETSQP 138 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + I + +++ F+ + FL+ AR ++++ + ++ I + Sbjct: 139 TQNPIFGSSSPASA-----APVINAPAWFNEERFLDAARGHFQSLQQHWDANEMDKIAEF 193 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V ++ Q R +S+ + ++++ + T+ G ++ + Sbjct: 194 VTPQMLQFLK---KERADLGDGFQSTYIENLNVQLDGVDDRADKTIATLTFSGVSKTSRF 250 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D + S W R + P W++ + Sbjct: 251 D-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 279 >gi|307214389|gb|EFN89460.1| Probable 39S ribosomal protein L45, mitochondrial [Harpegnathos saltator] Length = 334 Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 19/150 (12%) Query: 87 VMRDIVSVYTDFDPKDFLNEA----RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 +R I S F F+ EA + +YEA+ + EG+ ++ V Y ++ Sbjct: 139 AIRKIKSFDDMFKTSHFIEEAIDIYKKAYEAL--AAKEGEEKLLQ-YVTETAYPKMIHNM 195 Query: 143 STRKSNEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLL 195 K + + + M+ + +EN IT+R Q I A YD+ L Sbjct: 196 MD-----KTIHWKFLESLEPARVVHMRTTDVITKENVFAQITVRFHTQQILAIYDRFGRL 250 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 I + V++ F +++ W + Sbjct: 251 IQGSEILRKDVLEYIVFEKHLANEYGIWRI 280 >gi|195054150|ref|XP_001993989.1| GH22480 [Drosophila grimshawi] gi|193895859|gb|EDV94725.1| GH22480 [Drosophila grimshawi] Length = 353 Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 78/209 (37%), Gaps = 21/209 (10%) Query: 28 RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83 RGV + E+PF +G YV + D + I G K+ E ++ Sbjct: 79 RGVFPPRPWMERPFHISCTGGIFEPYVPPEGDGKKSIITTSGAKQK-----FEFLEKKSK 133 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +R I S F +F + A++ Y + + + I + V R Y + ++ Sbjct: 134 SMLAVRKIRSYEESFSSDEFGSYAQDIYISAHTHMAAKEKYKIREFVTERCYPEMMHNVK 193 Query: 144 TRKSNEKNVKSSLV-GIDDMKIINAS------IEENTVYITIRIVGQFISASYDKDNLLI 196 K + + ++ ++++A E IT+R Q + A YD+ L+ Sbjct: 194 D-----KTIHWRFLQSLEPPRLVHARCTEVITKENQFAQITVRFHTQQMLAIYDRFGRLM 248 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 + V++ F ++I W L Sbjct: 249 HGSEILTKDVLEYVVFEKHISNEYGQWRL 277 >gi|229593438|ref|YP_002875557.1| hypothetical protein PFLU6076 [Pseudomonas fluorescens SBW25] gi|229365304|emb|CAY53654.1| putative exported protein [Pseudomonas fluorescens SBW25] Length = 289 Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 71/221 (32%), Gaps = 34/221 (15%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F IL+ A I F+ + F K + ++K Sbjct: 101 IFDILIMAVIA-FLVFR--------------FIAARRRKQQEHLAPAGAPMQREVFEQKP 145 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + SI G+ R +++ F+ + F+ AR+ ++++ + ++ I + Sbjct: 146 AMGSIFG----GSAAPAAARPVINAPAWFNEERFVEAARSHFQSLQQHWDANEMDKISEF 201 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V ++ + R +S+ + +++ + T+ G ++ + Sbjct: 202 VTPQLLEFLKR---ERADLGDAFQSTYIDDLRVQLEGVDDRADKTIATLTFSGVSKTSRF 258 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D + S W R + P W++ + Sbjct: 259 D-QGEVFSES----------WNMERAQGDNQP-WLVAGIRQ 287 >gi|170691129|ref|ZP_02882295.1| import inner membrane translocase subunit Tim44 [Burkholderia graminis C4D1M] gi|170144378|gb|EDT12540.1| import inner membrane translocase subunit Tim44 [Burkholderia graminis C4D1M] Length = 324 Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 66/230 (28%), Gaps = 28/230 (12%) Query: 5 KMDSGD--FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 +M S +++ A + F F+ +P + G S+ + Sbjct: 116 QMLSNMLLIGLVVMAGVMLFRFI---------ANRRRPDLAYGQGAASRSQGNGSPFQHP 166 Query: 63 GKGKKKDNLDSI--NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 + + + + S D + + A+ + + ++ Sbjct: 167 NQNGQARPDTNFFGTQRAATNPVAATGAFSAPSQPLGLDQAELVTSAKTMFMRLQRAWDA 226 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + + +L ++ L R S + V D +++ N ++++R Sbjct: 227 NEQGDLFELTTPEMFAQLKRDLEGRGSQPSRTE---VPQLDAEVLGVESTANETFVSVRF 283 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 GQ D ++W VR+ + W L + Sbjct: 284 YGQMR-----------EDDAPTAQPFQEVWNIVRSAHTGD-TWRLAGIQQ 321 >gi|313216757|emb|CBY38005.1| unnamed protein product [Oikopleura dioica] gi|313227382|emb|CBY22529.1| unnamed protein product [Oikopleura dioica] Length = 393 Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 61/157 (38%), Gaps = 15/157 (9%) Query: 85 NKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDFNDS 141 N ++ I V FD + F+ + E I +++ V IE Q F + Sbjct: 234 NDTIKAIRQVDKKFDQEAFVQFLES--EMIPIILEAKAINDVAVIEDWCLDAPAQRF--A 289 Query: 142 LSTRKSNEKNVKS--SLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199 + R+ + + + + ++I++ ++ +N I + A DKD +I + Sbjct: 290 IKHREQAKNKITYYEKTINLQKLEILDGTVHDNMPAFQISFETNTLMAYTDKDGNVIEQE 349 Query: 200 ----PEIFGKVIDIWTFVRNIPPSNPN--WVLISTKL 230 P+ K +W+ R+ P+ W ++ + Sbjct: 350 GYPKPDEVYKSYHVWSVCRDPMEPEPSAAWRVLECET 386 >gi|46201583|ref|ZP_00054758.2| COG4395: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 343 Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 54/156 (34%), Gaps = 12/156 (7%) Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV----DSFFEGKVHAIEKLVDSRVYQDF 138 + + + +FDP + ++ I+ ++ +G + ++++ V Sbjct: 194 PMISGAPPLARIEKEFDPS---GNDQEAFTEILLGVQQAWSDGNLLSLKRFATPEVVSFL 250 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT--IRIVGQFISASYDKDNLLI 196 ++ +S S K V + + + E Y+T + D + Sbjct: 251 SEDMSRNASEGIANKVENVTLLKGDVSESWSEGGFDYLTAILTFSCNDYMVRLD-TGAVA 309 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +P + WTF+R+ W+L + + + Sbjct: 310 EGNPRATVTHTEAWTFMRSTNGG--RWLLSAVQQVQ 343 >gi|302191653|ref|NP_001180514.1| 39S ribosomal protein L45, mitochondrial [Gallus gallus] Length = 296 Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 12/145 (8%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 +R + +F K F A+ Y +S + LV R Y D R Sbjct: 120 ALRKVKDHDPNFSTKTFPEVAQEIYVEAHNSLANFNKQKLHSLVTERCYPDMV-----RG 174 Query: 147 SNEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSD 199 + K ++ S V + ++ + + N +T+R+ + A YD+ L+ Sbjct: 175 NRYKTIRWSFVESLEPPRVVHVRCTSVVNQGNLYGQVTVRMHTRQTLAIYDRFGRLMYGG 234 Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWV 224 ++ V++ F R + W Sbjct: 235 EKLPKDVLEYVVFERYLVNPYGTWR 259 >gi|330976327|gb|EGH76384.1| import inner membrane translocase, subunit Tim44 [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 281 Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 66/221 (29%), Gaps = 36/221 (16%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F IL+ I F+ + + K G + + Sbjct: 95 LFDILIMGLIA-FLIFR---------------FIARRRQQQQPKMAAAGASPYQRETSQP 138 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + I + +++ F+ + FL+ AR ++++ + ++ I + Sbjct: 139 AQNPIFGSSSPAST-----APVINAPAWFNEQRFLDAARGHFQSLQQHWDANEMDKIAEF 193 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V ++ Q R +S+ + +++ + T+ G ++ + Sbjct: 194 VTPQMLQFLK---KERADLGDGFQSTYIENLQVQLDGVDDRADKTIATLTFSGVSKTSRF 250 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D + S W R + P W++ + Sbjct: 251 D-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 279 >gi|104784399|ref|YP_610897.1| hypothetical protein PSEEN5505 [Pseudomonas entomophila L48] gi|95113386|emb|CAK18114.1| conserved hypothetical protein; putative signal peptide [Pseudomonas entomophila L48] Length = 281 Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 68/228 (29%), Gaps = 37/228 (16%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M DF LL I F+ + F + Sbjct: 89 FEGMQILDF--LLMGLIA-FLVFR--------------FIAARRRQQQPQHAAAGHAPYQ 131 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 + + + I G V +++ F+ FL AR+ ++++ + + Sbjct: 132 REAQPQAAPQPI-----FGGSAAPVASPVINAPAWFNEASFLAAARSHFQSLQQHWDANE 186 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + I + V ++ R + +S+ + D+++ + T+ G Sbjct: 187 MDKIAEFVTPQMLDFLKR---ERAEEGEGFQSTYIDDLDVQLEGVDDRADKTIATLTFRG 243 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ +D + + W R + P W+L + Sbjct: 244 VSKTSRFD-QGEV----------FNESWHMERAQGENQP-WLLAGIRQ 279 >gi|306832127|ref|ZP_07465281.1| conserved hypothetical protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425566|gb|EFM28684.1| conserved hypothetical protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 274 Score = 57.6 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 6/147 (4%) Query: 85 NKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST 144 K + I V+ DFD DF++ + Y + +++ + + L +++ N L Sbjct: 106 EKAIEAIKLVHPDFDEYDFISYTKELYLELQNAWMDKDWERVRHLETESLFRQHNMQLQE 165 Query: 145 RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIF 203 N V +D I + + ++ + + + + D LI DP Sbjct: 166 YIDNHTTNHLDRVCVDRAIIKSFKMSDDHDVVKVILSSYMCDYIRNDDTGELIQGDPTEH 225 Query: 204 GKVIDIWTF---VRNIPPSNP--NWVL 225 + F ++ SNP +W L Sbjct: 226 LYTVYNMEFIYEEDDVSDSNPYQHWKL 252 >gi|288906088|ref|YP_003431310.1| hypothetical protein GALLO_1899 [Streptococcus gallolyticus UCN34] gi|288732814|emb|CBI14390.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34] Length = 274 Score = 57.6 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 6/147 (4%) Query: 85 NKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST 144 K + I V+ DFD DF++ + Y + +++ + + L +++ N L Sbjct: 106 EKAIEAIKLVHPDFDEYDFISYTKELYLELQNAWMDKDWERVRHLETESLFRQHNMQLQE 165 Query: 145 RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIF 203 N V +D I + + ++ + + + + D LI DP Sbjct: 166 YIDNHTTNHLDRVCVDRAIIKSFKMSDDHDVVKVILSSYMCDYIRNDDTGELIQGDPTEH 225 Query: 204 GKVIDIWTF---VRNIPPSNP--NWVL 225 + F ++ SNP +W L Sbjct: 226 LYTVYNMEFIYEEDDVSDSNPYQHWKL 252 >gi|291530805|emb|CBK96390.1| Tim44-like domain [Eubacterium siraeum 70/3] Length = 322 Score = 57.6 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 45/139 (32%), Gaps = 1/139 (0%) Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 R ++ I +F D + + Y I +++ + + + ++ +Y Sbjct: 121 PNRTEQIEGIIKQKDPNFSASDLITFTKQVYIDIENAWCKRDMTPVRPVMHENLYNTTCK 180 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD-KDNLLISSD 199 + + + ID + + + Y+T + + I D K +I D Sbjct: 181 QVQAKIEQGVIYHYESIAIDTAYLTSYERDSQFEYVTAYLTSRMIDYQVDEKTGKIIRGD 240 Query: 200 PEIFGKVIDIWTFVRNIPP 218 FVR++ Sbjct: 241 KTTRWVQKYKMKFVRSLGV 259 >gi|146341888|ref|YP_001206936.1| putative signal peptide [Bradyrhizobium sp. ORS278] gi|146194694|emb|CAL78719.1| conserved hypothetical protein; putative signal peptide [Bradyrhizobium sp. ORS278] Length = 324 Score = 57.2 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 45/127 (35%), Gaps = 9/127 (7%) Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164 ++E I ++ V + L + F L ++ K + V + + Sbjct: 200 EAFERLLGEIQSAWSNEDVGRLRLLSTPEMASYFERDLEQNQARGVVNKVTGVKLLQGDL 259 Query: 165 INASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223 + E Y T+ + + ++ ++ + +V +IWTF+R+ W Sbjct: 260 AESWRENGADYATVAMRFTLADKTIERASGRVVEGS-DQPQEVTEIWTFLRHPGAD---W 315 Query: 224 VLISTKL 230 L + + Sbjct: 316 QLSAIQQ 322 >gi|293603149|ref|ZP_06685582.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292818380|gb|EFF77428.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 252 Score = 57.2 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 71/220 (32%), Gaps = 20/220 (9%) Query: 13 ILLFAFI-TF-FVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 +L+ A + F+ +LRG G +T + F+G + + R + Sbjct: 44 LLIAAVVFAVMFIIRRLRGA-GPRTATQGAFNGANNAPGQQQQPMWREALKPTAAAAPAA 102 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + P + V DFD +FL +A+ + I + G + + Sbjct: 103 AAAAAPVAPPAVLPKAGEDNNWFVPGDFDTPNFLKQAKEQFVRIQAVWDSGSTDGLRDFL 162 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 + + L+ R + + L+ +++ + ++R G Sbjct: 163 TDDLITELKPQLAERGAAPNKTEVVLLN---AEMLGIETVSDGHLASVRFSGMLR----- 214 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S + ++W P+N W+L + Sbjct: 215 ------ESPGAEAFRFEEVWNL---FKPANGGWLLAGIQQ 245 >gi|167844353|ref|ZP_02469861.1| Tim44-like domain protein [Burkholderia pseudomallei B7210] Length = 258 Score = 57.2 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57 F M + +I L A ++ + + G ++P G +S+ Sbjct: 40 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 95 Query: 58 GIITLGKGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 G + + G +V FD + FL A+ + + Sbjct: 96 QRQAAPGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 155 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ EG + I + ++ + L R + ++ +V + D +++ Sbjct: 156 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 212 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++R G + ++W + + W+L + Sbjct: 213 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 255 >gi|91086739|ref|XP_971533.1| PREDICTED: similar to GA19976-PA [Tribolium castaneum] gi|270009728|gb|EFA06176.1| hypothetical protein TcasGA2_TC009023 [Tribolium castaneum] Length = 319 Score = 57.2 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 72/199 (36%), Gaps = 21/199 (10%) Query: 38 EKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93 EKPF +G YV + D + +G K+ + ++ +R I Sbjct: 83 EKPFFISSTGGIFEPYVPPEGDGKISPIHMQGAKQKL-----QFLEKKSKTMMAIRKIRM 137 Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153 DFD F EA N Y + + + I V R Y + + ++ + Sbjct: 138 FEEDFDTTAFCKEAENIYVKMHELMAKKDWDNITDYVTERAY---PEVIHNVENK--TIH 192 Query: 154 SSLV-GIDDMKIINAS------IEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 L+ I+ ++++A E T+R Q + A YD+ L+ I V Sbjct: 193 WKLIKNIELPRVVHARCTDVITKENVFGQTTVRFHTQQMLAVYDRFGRLMHGSEIIAKDV 252 Query: 207 IDIWTFVRNIPPSNPNWVL 225 ++ F +++ W + Sbjct: 253 LEYIVFEKHLANVYGKWRI 271 >gi|126454670|ref|YP_001064966.1| Tim44-like domain-containing protein [Burkholderia pseudomallei 1106a] gi|242315731|ref|ZP_04814747.1| Tim44 domain protein [Burkholderia pseudomallei 1106b] gi|126228312|gb|ABN91852.1| Tim44 domain protein [Burkholderia pseudomallei 1106a] gi|242138970|gb|EES25372.1| Tim44 domain protein [Burkholderia pseudomallei 1106b] Length = 323 Score = 57.2 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57 F M + +I L A ++ + + G ++P G +S+ Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 160 Query: 58 GIITLGKGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 G + + G +V FD + FL A+ + + Sbjct: 161 QRQAAPGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 220 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ EG + I + ++ + L R + ++ +V + D +++ Sbjct: 221 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 277 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++R G + ++W + + W+L + Sbjct: 278 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 320 >gi|260829205|ref|XP_002609552.1| hypothetical protein BRAFLDRAFT_285685 [Branchiostoma floridae] gi|229294914|gb|EEN65562.1| hypothetical protein BRAFLDRAFT_285685 [Branchiostoma floridae] Length = 349 Score = 57.2 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 16/191 (8%) Query: 42 SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPK 101 + Y+ + D R + +G + +R I +F K Sbjct: 86 TPEVMDPYIPPEGDGRQSVLSKEGAVQRLSS-----AKALATSQLSIRKIKEFDKEFSTK 140 Query: 102 DFLNEARNSYEAIVDS---FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKS---- 154 F A+ Y+ + F H + +LV + Y D R +S Sbjct: 141 TFAGTAQEIYKEANNCLANFNTRNRHRLHQLVTEKCYPDMVRGFKFRTIRWTFQESVEPP 200 Query: 155 SLVGIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213 +V + +I+ + N +T+R+ + A YD+ L D + V++ F Sbjct: 201 KVVHVRHNDLIS---KGNVYGQVTVRMHTRQTLAIYDRFGRLEFGDENLVKDVLEYVVFE 257 Query: 214 RNIPPSNPNWV 224 R++ +W Sbjct: 258 RHLVNPYSSWR 268 >gi|254197071|ref|ZP_04903495.1| Tim44-like domain protein [Burkholderia pseudomallei S13] gi|169653814|gb|EDS86507.1| Tim44-like domain protein [Burkholderia pseudomallei S13] Length = 339 Score = 57.2 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSG-----FFSGKYVFSKRDER 57 F M + +I L A ++ + + G ++P G +S+ Sbjct: 121 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGV 176 Query: 58 GIITLGKGKKKDNLDSINELFP---IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 G + + G +V FD + FL A+ + + Sbjct: 177 QRQAAPGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRL 236 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ EG + I + ++ + L R + ++ +V + D +++ Sbjct: 237 QAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDVVQL-DAELLAVEDRGGEH 293 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++R G + ++W + + W+L + Sbjct: 294 LASVRFHG----LIRETQGAAAE-------PFDEVWNLSK---SGSQGWLLAGIQQA 336 >gi|329906020|ref|ZP_08274321.1| putative membrane protein [Oxalobacteraceae bacterium IMCC9480] gi|327547352|gb|EGF32182.1| putative membrane protein [Oxalobacteraceae bacterium IMCC9480] Length = 209 Score = 57.2 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 71/226 (31%), Gaps = 23/226 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGN-EKPFSGFFSGKYVFSKRDERGIITLGK 64 M S ++ L A FF+ + +KT + KP +G Sbjct: 4 MISTLLMVGLLAAAAFFI----YRMFKRKTDDGSKPGYAGGYDAGSTDSSSRNYTPEIGS 59 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 + + + P+ + + + DFD FL ++ + + ++ + ++ Sbjct: 60 RIEPVAQPAALQSVPLTSGAAAAPFGVPA---DFDVPGFLRNSKTYFIRLQAAWDKADIN 116 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 I + S ++ + + R + ++ V D +++ +++ Sbjct: 117 DIREFTSSEMFAELRLQIQER---GASPNNTDVVKLDAELLGVETVGGDYLASVKFS--- 170 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ S+ + W ++ W+L + Sbjct: 171 --------GMIKESESAPAEPFAEAWNLSKS-TSGQGGWILAGIQQ 207 >gi|330964447|gb|EGH64707.1| Tim44-like domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 281 Score = 57.2 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 65/221 (29%), Gaps = 37/221 (16%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F IL+ I F+ + ++ ++P Y G Sbjct: 96 LFDILIMGLIA-FLIFRFIA---RRRQQQQPKMAAAGAPYQRETSQPAQNPIFGSSSPAS 151 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 IN F+ + FL+ AR ++++ + ++ I + Sbjct: 152 AAPVINAPA------------------WFNEERFLDAARGHFQSLQQHWDANEMDKIAEF 193 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V ++ Q R +S+ + ++++ + T+ G ++ + Sbjct: 194 VTPQMLQFLK---KERADLGDGFQSTYIENLNVQLDGVDDRADKTIATLTFSGVSKTSRF 250 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D + S W R + P W++ + Sbjct: 251 D-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 279 >gi|50949925|emb|CAH10507.1| hypothetical protein [Homo sapiens] Length = 90 Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 33/87 (37%) Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNL 194 Y + K+ S ++ ID++ + + E + I Q + + Sbjct: 1 YSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGE 60 Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNP 221 ++ DP+ +++ +W R+ NP Sbjct: 61 VVEGDPDKVLRMLYVWALCRDQDELNP 87 >gi|329916047|ref|ZP_08276350.1| putative membrane protein [Oxalobacteraceae bacterium IMCC9480] gi|327544779|gb|EGF30180.1| putative membrane protein [Oxalobacteraceae bacterium IMCC9480] Length = 204 Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 23/215 (10%), Positives = 61/215 (28%), Gaps = 25/215 (11%) Query: 16 FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 F ++ K S + F+ + G+ + D Sbjct: 13 LLAAAGFFIYRM----------FKRKSEQGGTQPAFAGAAKTGLTPDIGSRIDPATDYRF 62 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 G+ + V DFD F+ + + + ++ V+ I + ++ Sbjct: 63 GSNSAGSATGNSAQAPWGVPADFDTTGFVRHTKTYFVRLQAAWDSANVNDIREFTTPEMF 122 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + + R + + V D +++ + ++ +++ ++ Sbjct: 123 AELRLQIQER---GPSDSHTDVVQLDAELLGMELVDDDHLASVKFS-----------GMI 168 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 SD ++W + WVL + Sbjct: 169 KESDAAPAEPFTEVWNLSKP-RNGQGGWVLAGIQQ 202 >gi|157786676|ref|NP_001099304.1| 39S ribosomal protein L45, mitochondrial [Rattus norvegicus] gi|149054036|gb|EDM05853.1| mitochondrial ribosomal protein L45 (predicted) [Rattus norvegicus] Length = 306 Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 55/148 (37%), Gaps = 12/148 (8%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 +R I +F KDF +A++ + + LV + D + Sbjct: 121 AIRKIKEFDANFKTKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMV-----WE 175 Query: 147 SNEKNVKSSLV-GIDDMKIINASIEENT------VYITIRIVGQFISASYDKDNLLISSD 199 K V+ S V ++ ++++ +T+R+ + A YD+ L+ Sbjct: 176 LKYKTVRWSFVESLEPAQVVHVRSSGLVNQSNMYGQVTVRLHTRQTLAIYDRFGRLMYGQ 235 Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 ++ V++ F R++ +W + + Sbjct: 236 EDVPKDVLEYVVFERHLMNPYGSWRMHA 263 >gi|312089990|ref|XP_003146448.1| hypothetical protein LOAG_10876 [Loa loa] gi|307758388|gb|EFO17622.1| hypothetical protein LOAG_10876 [Loa loa] Length = 403 Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 41/101 (40%), Gaps = 3/101 (2%) Query: 132 SRVYQDFNDSLSTRKSNE-KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 S Y + ++ K S ++ ID ++++ + E+ I I ++ + Sbjct: 295 SEAYNILSTIVNEYKKVNFNTADSRVIDIDRVEMVTGKMMEHGPVIIITFQAYMVNVVRN 354 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTK 229 + ++ DP+ +V +W R++ NP W ++ Sbjct: 355 MEGKVVEGDPKSPVRVHHVWVMCRDMEEYNPAVAWKVLEVH 395 >gi|241661967|ref|YP_002980327.1| import inner membrane translocase subunit Tim44 [Ralstonia pickettii 12D] gi|240863994|gb|ACS61655.1| import inner membrane translocase subunit Tim44 [Ralstonia pickettii 12D] Length = 339 Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 27/243 (11%), Positives = 70/243 (28%), Gaps = 40/243 (16%) Query: 13 ILLFAFITFFVFLQLRGVLGKKT-------------GNEKPFSGFFSGKYVFSKRDERGI 59 ++L A + F V +R V G + G+ +P+ + + Sbjct: 110 LILIALVAFVVMWIIRKVRGSRPQGPAYATGGPSLGGDREPYVPQPAAPAPQASAPAAAS 169 Query: 60 ITLGKGKKKDNL------------DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107 + G + + + V DFD + FL A Sbjct: 170 LNTGNTSGLGAGAATAAQSWNLGGSAASAQAVNAQPAAAAPQQPWGVPADFDTQAFLRNA 229 Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167 + + + ++ G ++ I + ++ + L+ R + + V + +++ Sbjct: 230 KVYFIRLQAAWDAGNLNDIREFTTPEMFAEIKMDLADR---GTSPNKTDVVSVEAEMLGI 286 Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 + ++R ++ ++W + + WVL Sbjct: 287 ETQAAEYLASVRFS-----------GMIREEANAPAQPFAEVWNLTKPTQGAG-GWVLAG 334 Query: 228 TKL 230 + Sbjct: 335 IQQ 337 >gi|325979053|ref|YP_004288769.1| hypothetical protein SGGBAA2069_c18530 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178981|emb|CBZ49025.1| hypothetical protein SGGBAA2069_c18530 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 274 Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 6/147 (4%) Query: 85 NKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST 144 K + I V+ DFD DF++ + Y + +++ + + L +++ N L Sbjct: 106 EKAIEAIKLVHPDFDEYDFISYTKELYLELQNAWMDKDWERVRHLETESLFRQHNMQLQE 165 Query: 145 RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIF 203 N V +D I + + ++ + + + + D LI DP Sbjct: 166 YIDNHTTNHLDRVCVDQAIIKSFKMSDDHDVVKVILSSYMCDYIRNDDTGELIQGDPTEH 225 Query: 204 GKVIDIWTF---VRNIPPSNP--NWVL 225 + F ++ SNP +W L Sbjct: 226 LYTVYNMEFIYEEDDVSDSNPYQHWKL 252 >gi|299769068|ref|YP_003731094.1| hypothetical protein AOLE_04120 [Acinetobacter sp. DR1] gi|298699156|gb|ADI89721.1| hypothetical protein AOLE_04120 [Acinetobacter sp. DR1] Length = 330 Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 24/194 (12%), Positives = 56/194 (28%), Gaps = 18/194 (9%) Query: 40 PFSGFFSGKYVFSKRDERGIITLGKGKKKDNL-DSINELFPIGTRLNKVMRDIVSVYTDF 98 P++ G+ F + G + S+ + D Sbjct: 153 PYAPNNDGQNPFGRSAAPQATPRNAGDNTNIFGQSVGGGAATQAPFGGATTSNGNQLPDG 212 Query: 99 D-PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157 P FL AR + I + I + + +Y + + + + + Sbjct: 213 SEPAAFLRIARQRFNHIQSMNTASNIEEIRRYLTPELYSSMYNDIMENQDQDV---AEFS 269 Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217 ++ M + +A+ E +++R + + +IW FV+ Sbjct: 270 NLNAMVVDSAT-ENGQYVVSVRF-----------TGTVSEDLNSLPQPFTEIWHFVKPAG 317 Query: 218 PSNPNWVLISTKLG 231 +WV+ + Sbjct: 318 SQQ-DWVVAGIQQA 330 >gi|89900086|ref|YP_522557.1| import inner membrane translocase subunit Tim44 [Rhodoferax ferrireducens T118] gi|89344823|gb|ABD69026.1| import inner membrane translocase, subunit Tim44 [Rhodoferax ferrireducens T118] Length = 318 Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 28/245 (11%), Positives = 78/245 (31%), Gaps = 34/245 (13%) Query: 6 MDSGDFLILLFAFITFFV------FLQLRGVLG-KKTGNEKPFS------GFFSGKYVFS 52 M IL+FA + + F + R G + K + + S Sbjct: 86 MGGAFGQILMFALLAMVIMMAVAWFKRSRS--GAQSQDTAKSPFAFQGAAPATAAQLPAS 143 Query: 53 KRDERGIITLGKGKKKDNLDSINE----LFPIGTRLNKVMRDIVS--VYTDFDPKDFLNE 106 R E + N + G+ + + S V FD + FL Sbjct: 144 YRPENVGNDASARPWERNSTAFEALKTTPAVAGSMIGSGLAGSQSWGVPDGFDAEGFLTS 203 Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN-EKNVKSSLVGIDDMKII 165 A+ ++ ++ ++ + ++A+ ++ + ++ L+ R+++ V + V + + +++ Sbjct: 204 AKANFVSLQAAWDKSDINALRVMMTDTMLKEIQAQLAEREAHTGGPVNLTDVVMIEAQLL 263 Query: 166 NASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 + ++ ++ ++W + W++ Sbjct: 264 GIEDTGDDYMASVEFS-----------GMIREEPSAGASPFREVWNMTK-TKSGKSGWLV 311 Query: 226 ISTKL 230 + Sbjct: 312 AGVQA 316 >gi|171321552|ref|ZP_02910488.1| import inner membrane translocase subunit Tim44 [Burkholderia ambifaria MEX-5] gi|171093167|gb|EDT38379.1| import inner membrane translocase subunit Tim44 [Burkholderia ambifaria MEX-5] Length = 344 Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 71/237 (29%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I L A I +R + ++ E +S S Sbjct: 124 FASMMANVIVIALLAMIG---IWLVRKFMNRRRSQEPAYSVGGSASSSGGYSQSPSFQQG 180 Query: 63 GKGKKKDNLDSINELFPIG---------TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 G S G + + V FD + FL A+ + Sbjct: 181 STGNTYAGSGSSYANEAQGVFGGGAAAAGAAGAMAAAPLQVPAGFDTEAFLRSAKVYFVR 240 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ +G + I + ++ + L +R ++ +V + D +++ Sbjct: 241 LQAAWDQGNLADIREFTTPEMFAEIKIDLDSR--GNDANQTDVVQL-DAELVAIEDRGIE 297 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R G I S + + ++W + + W+L + Sbjct: 298 QSASVRFHG-LIRESANAPAAPLD----------EVWNLSK---SGSQGWLLAGIQQ 340 >gi|187927437|ref|YP_001897924.1| import inner membrane translocase subunit Tim44 [Ralstonia pickettii 12J] gi|309779861|ref|ZP_07674616.1| Tim44 domain protein [Ralstonia sp. 5_7_47FAA] gi|187724327|gb|ACD25492.1| import inner membrane translocase subunit Tim44 [Ralstonia pickettii 12J] gi|308921438|gb|EFP67080.1| Tim44 domain protein [Ralstonia sp. 5_7_47FAA] Length = 339 Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 27/243 (11%), Positives = 70/243 (28%), Gaps = 40/243 (16%) Query: 13 ILLFAFITFFVFLQLRGVLGKKT-------------GNEKPFSGFFSGKYVFSKRDERGI 59 ++L A + F V +R V G + G+ +P+ + + Sbjct: 110 LILIALVAFVVMWIIRKVRGSRPQGPAYATGGPSLGGDREPYVPQPAAPAPQASAPAAAS 169 Query: 60 ITLGKGKKKDNL------------DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107 + G + + + V DFD + FL A Sbjct: 170 LNTGNTSGLGAGAATAAQSWNLGGSAASAQAVNAQPAAAAPQQPWGVPADFDTQAFLRNA 229 Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167 + + + ++ G ++ I + ++ + L+ R + + V + +++ Sbjct: 230 KVYFIRLQAAWDAGNLNDIREFTTPEMFAEIKMDLADR---GTSPNKTDVVSVEAEMLGI 286 Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 + ++R ++ ++W + + WVL Sbjct: 287 ETQAAEYLASVRFS-----------GMIREEANAPAQPFAEVWNLTKPTQGAG-GWVLAG 334 Query: 228 TKL 230 + Sbjct: 335 IQQ 337 >gi|70733447|ref|YP_263222.1| hypothetical protein PFL_6164 [Pseudomonas fluorescens Pf-5] gi|68347746|gb|AAY95352.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5] Length = 291 Score = 56.8 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 68/223 (30%), Gaps = 37/223 (16%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEK--PFSGFFSGKYVFSKRDERGIITLGKGKK 67 F IL+ A I FV + ++ E+ P + F + G G Sbjct: 102 IFDILIMAVIA-FVIFRFIAAR-RRKQQEQYAPAGHAPMQREAFEPQQPAGGSIFGGSPA 159 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 IN F+ + F+ AR+ ++++ + ++ I Sbjct: 160 PAARPVINAPA------------------WFNEERFIEAARSHFQSLQQHWDANEMDKIA 201 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 + V ++ Q R +S+ + +++ + T+ G ++ Sbjct: 202 EFVTPQMLQFLKQ---ERADLGDGFQSTYIDNLQVQLEGVDDRADKTIATLTFSGVSKTS 258 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +D + S W R + P W++ + Sbjct: 259 RFD-QGEVFSES----------WNMERAQGDNQP-WLVAGIRQ 289 >gi|312963949|ref|ZP_07778420.1| import inner membrane translocase, subunit Tim44 [Pseudomonas fluorescens WH6] gi|311281984|gb|EFQ60594.1| import inner membrane translocase, subunit Tim44 [Pseudomonas fluorescens WH6] Length = 289 Score = 56.8 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 70/221 (31%), Gaps = 34/221 (15%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F IL+ A I F+ + F K + ++K Sbjct: 101 IFDILIMAVIA-FLVFR--------------FIAARRRKQQEHLAPAGAPMQREAFEQKP 145 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + SI G+ R +++ F+ + F+ AR+ ++++ + ++ I + Sbjct: 146 AMGSIFG----GSAAPAAARPVINAPAWFNEERFVEAARSHFQSLQQHWDANEMDKISEF 201 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V ++ + R +S+ + +++ + T+ G ++ + Sbjct: 202 VTPQLLEFLKR---ERADLGDGFQSTYIDDLRVQLDGVDDRADKTIATLTFSGVSKTSRF 258 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D+ + W R + W++ + Sbjct: 259 DQGEA-----------FSESWNMERAQG-DDQPWLVAGIRQ 287 >gi|78067527|ref|YP_370296.1| putative transporter [Burkholderia sp. 383] gi|77968272|gb|ABB09652.1| putative transporter [Burkholderia sp. 383] Length = 344 Score = 56.4 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 70/232 (30%), Gaps = 26/232 (11%) Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 S +++ A + +R + ++ E +S S G G Sbjct: 126 SMMANVIVIALLAAVGIWLIRKFMNRRRPQEPAYSVGGSASSSGGYSQSPSFQQGGTGSN 185 Query: 68 KDNLDSINELFPIG---------TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 S G + V FD + FL ++ + + ++ Sbjct: 186 YAGSGSSYANEAQGVFGGGAAATGAAAAAAAAPLQVPAGFDTEAFLRSSKVYFVRLQAAW 245 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 +G + I + ++ + L +R ++ ++ +V + D +++ ++ Sbjct: 246 DQGNLADIREFTTPEMFAEIKIDLDSR--GNESNQTDVVQL-DAELVAIEDRGIEQSASV 302 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 R G I S + ++W + + W+L + Sbjct: 303 RFHG-LIRESANASAAPFD----------EVWNLSK---SGSQGWLLAGIQQ 340 >gi|148235359|ref|NP_001079503.1| 39S ribosomal protein L45, mitochondrial precursor [Xenopus laevis] gi|29611839|sp|P59480|RM45_XENLA RecName: Full=39S ribosomal protein L45, mitochondrial; Short=L45mt; Short=MRP-L45; Flags: Precursor gi|27696384|gb|AAH43883.1| Mrlp45 protein [Xenopus laevis] Length = 309 Score = 56.4 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 65/194 (33%), Gaps = 14/194 (7%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 E+P + + + G L K+ L + +R + ++ Sbjct: 73 ERPINIACTAGILDPYVPPEGDARLSSLSKEG-LKQRTQQLKQTAASQLAIRKVKEYDSE 131 Query: 98 FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157 F K F +A+ + H + LV R Y + R + + ++ S V Sbjct: 132 FTTKTFPEKAQEIFITAHKYLTNFDRHKLHTLVTERCYPEMV-----RGNRYRTIRWSFV 186 Query: 158 -GIDDMKIINAS-----IEENT-VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210 I+ +++ + N +T+R+ + YD+ ++ E V++ Sbjct: 187 ESIEAPRVVQVRCPEMVSKGNLYAQVTVRMHNKQTLIVYDRFGRVMCGS-EEPRDVLEYV 245 Query: 211 TFVRNIPPSNPNWV 224 F R++ W Sbjct: 246 VFERHMVNPYGTWR 259 >gi|217322864|ref|YP_002324754.1| hypothetical protein ABBFA_000841 [Acinetobacter baumannii AB307-0294] gi|213985735|gb|ACJ56034.1| hypothetical protein ABBFA_000841 [Acinetobacter baumannii AB307-0294] Length = 190 Score = 56.4 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 26/196 (13%), Positives = 57/196 (29%), Gaps = 28/196 (14%) Query: 36 GNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVY 95 G + PF + + G G + S G +L Sbjct: 23 GGQNPFGRSAAPTNTGDNTNIFGQSVGGGAATQAPFGSATTNS--GNQLPDGSE------ 74 Query: 96 TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155 P FL AR + I + I + + +Y + + + + + Sbjct: 75 ----PASFLRVARQRFNHIQSINSASNIEEIRRYLTPELYNSMYNDIMENQDQDV---AE 127 Query: 156 LVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRN 215 ++ M + +A+ E +++R + + +IW FV+ Sbjct: 128 FSNLNAMVVDSAT-ENGQYIVSVRF-----------TGTVSEDLNSLPQPFTEIWHFVKP 175 Query: 216 IPPSNPNWVLISTKLG 231 + +WV+ + Sbjct: 176 VGSQQ-DWVVAGIQQA 190 >gi|154291697|ref|XP_001546429.1| hypothetical protein BC1G_15139 [Botryotinia fuckeliana B05.10] gi|150846639|gb|EDN21832.1| hypothetical protein BC1G_15139 [Botryotinia fuckeliana B05.10] Length = 166 Score = 56.4 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 12/134 (8%) Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI---DDMK 163 A Y + +F G + + ++ + + F +++R + V +LV + + Sbjct: 23 AEALYREMYQNFAAGDIGRLRRMCADGLLESFAQRIASR-PRGQKVTWNLVKMNRRPKIM 81 Query: 164 IINASIEEN-----TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP 218 A + +RI + D + E V++ + Sbjct: 82 STKAVMIPGGDGNVIRQAVVRISSRQKMTLRDNKGKELPGSTE--KDVVEYVVVQKIYRN 139 Query: 219 -SNPNWVLISTKLG 231 +P W + T G Sbjct: 140 WQDPEWQVWGTTRG 153 >gi|323529253|ref|YP_004231405.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. CCGE1001] gi|323386255|gb|ADX58345.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. CCGE1001] Length = 322 Score = 56.4 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 67/229 (29%), Gaps = 26/229 (11%) Query: 4 IKMDSGD--FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61 +M S +++ A + F F+ +P + G S+ + + Sbjct: 115 TQMLSNLLLIGLVVMAGVMLFRFI---------ANRRRPDLAYGHGAANRSQGNGSPFLN 165 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 + D+ + D + + A++ + + ++ Sbjct: 166 QTGHARSDSHFFGTQRAATNPAGAAGAFSAPVQPLGVDQAELVVSAKSLFMRLQAAWDRN 225 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 + + +L ++ L R S + V + +++ + ++++R Sbjct: 226 EQGDLFELTTPEMFAQLKRDLEDRGSQPNRTE---VPQLEAEVLGVQSTADETFVSVRFY 282 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 GQ D ++W VR+ + W L + Sbjct: 283 GQMR-----------EDDAPTAQPFQEVWNMVRSARGGDA-WRLAGIQQ 319 >gi|330818295|ref|YP_004362000.1| hypothetical protein bgla_1g34410 [Burkholderia gladioli BSR3] gi|327370688|gb|AEA62044.1| hypothetical protein bgla_1g34410 [Burkholderia gladioli BSR3] Length = 353 Score = 56.4 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 34/250 (13%), Positives = 74/250 (29%), Gaps = 45/250 (18%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I L AFI ++ +L N KP + RG Sbjct: 123 FASMMANVIVIALLAFIGIWIVRKLMN------RNRKPEPAYAGAGSSPGSSMNRGGYDA 176 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMR----------------------DIVSVYTDFDP 100 G + + P + SV FD Sbjct: 177 GSNGGYASQNQAYAPAPSQPASSSSYANEAAGVFGGAAAAGAGLAAAGTAPSSVPAGFDS 236 Query: 101 KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160 + F+ A+ + + ++ EG + I + ++ + L++R + ++ +V + Sbjct: 237 EAFVRNAKVYFIRLQAAWDEGNMTDIREFTTPEMFAEVKVDLASRGA--DKNQTDVVQL- 293 Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN 220 + +++ N ++R L+ + ++W N Sbjct: 294 EAELLGVEERGNQYEASVRF-----------HGLIREAPGASAEPFEEVWNL---TKAGN 339 Query: 221 PNWVLISTKL 230 W+L + Sbjct: 340 EGWLLAGIQQ 349 >gi|255320354|ref|ZP_05361538.1| conserved hypothetical protein [Acinetobacter radioresistens SK82] gi|255302549|gb|EET81782.1| conserved hypothetical protein [Acinetobacter radioresistens SK82] Length = 333 Score = 56.4 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 66/232 (28%), Gaps = 41/232 (17%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEK--------------PFSGFFSGKYVFSKRDERG 58 +LL A + FFVF +K G +K P F + + Sbjct: 128 VLLAAAVAFFVF--------RKFGAKKKLATNNPYAPNSAGPNPSPFGQHNAAPRTQDNT 179 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 I + P GT + + +P FL AR + I Sbjct: 180 NIFGQSVGGSSTAANTANNAPFGTAYTNSGQQLPD---GTEPAAFLRIARQRFNHIQSMN 236 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 + I + + +Y + + + + ++ ++++ E +++ Sbjct: 237 TASNIEEIRRYLTPELYNAMRSDIMANQDQDV---AEFSNLN-AMVVDSVTENGQYVVSV 292 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 R + + + W FV+ +WV+ + Sbjct: 293 RF-----------TGTVSEDLNSLPQPFSETWHFVKPAGSQQ-DWVVAGIQQ 332 >gi|264676930|ref|YP_003276836.1| import inner membrane translocase, subunit [Comamonas testosteroni CNB-2] gi|262207442|gb|ACY31540.1| import inner membrane translocase, subunit [Comamonas testosteroni CNB-2] Length = 333 Score = 56.0 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 22/197 (11%), Positives = 61/197 (30%), Gaps = 21/197 (10%) Query: 42 SGFFSGKYVFSKRDERGIITLGKGKKKDNLD--SINELFPI--GTRLNKVMR--DIVSVY 95 +G G + + +G + I E G+ + + V Sbjct: 148 AGNLGGDVNAPQARQYNPEKVGNDASARPWEQNHIPEAAAAAGGSMIGSALSGSQNWGVP 207 Query: 96 TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS--NEKNVK 153 DFD + FL A+ ++ + ++ + + ++ + + LS R+S + Sbjct: 208 ADFDAEGFLTAAKRNFVTLQSAWDRSDITTLRSMMTDEMLAEIRSQLSERESQRAGEPNH 267 Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213 + ++ I D +++ N ++ ++ ++W Sbjct: 268 TDVLMI-DAQLLGIEDLGNGYMASVEFS-----------GMIREEASAGPSPFREVWNMT 315 Query: 214 RNIPPSNPNWVLISTKL 230 + W++ + Sbjct: 316 KP-KSGTSGWLVAGVQA 331 >gi|75676350|ref|YP_318771.1| hypothetical protein Nwi_2165 [Nitrobacter winogradskyi Nb-255] gi|74421220|gb|ABA05419.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 312 Score = 56.0 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 5/118 (4%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I ++ + V+ + L + F + L + S V + + A E T Sbjct: 198 IQAAWSKEDVNTLHTLATPEMVSYFTEDLRANDARGVVNTVSDVKLLQGDLAEAWREGVT 257 Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 Y T+ + I + ++ ++ + + +IWTF R W L + + Sbjct: 258 DYATVALRYSLIDKTTERASGRIVDG-GDQPQEAAEIWTFARRDGGK---WELSAIQQ 311 >gi|262379363|ref|ZP_06072519.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] gi|262298820|gb|EEY86733.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] Length = 325 Score = 56.0 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 66/232 (28%), Gaps = 41/232 (17%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEK--------------PFSGFFSGKYVFSKRDERG 58 +LL A + FFVF +K G +K P F + + Sbjct: 120 VLLAAAVAFFVF--------RKFGAKKKLATNNPYAPNSAGPNPSPFGQHNAAPRTQDNT 171 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 I + P GT + + +P FL AR + I Sbjct: 172 NIFGQSVGGSSTAANTANNAPFGTAYTNSGQQLPD---GTEPAAFLRIARQRFNHIQSMN 228 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 + I + + +Y + + + + ++ ++++ E +++ Sbjct: 229 TASNIEEIRRYLTPELYNAMRSDIMANQDQDV---AEFSNLN-AMVVDSVTENGQYVVSV 284 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 R + + + W FV+ +WV+ + Sbjct: 285 RF-----------TGTVSEDLNSLPQPFSETWHFVKPAGSQQ-DWVVAGIQQ 324 >gi|157131210|ref|XP_001655824.1| mitochondrial ribosomal protein, L45, putative [Aedes aegypti] gi|108871608|gb|EAT35833.1| mitochondrial ribosomal protein, L45, putative [Aedes aegypti] Length = 334 Score = 56.0 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 82/209 (39%), Gaps = 21/209 (10%) Query: 28 RGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83 RG+L + E+PF +G YV + D + +G K+ EL T+ Sbjct: 84 RGILPPRPWMERPFYISCTGGVFEPYVPPEGDGKMSAVSKEGAKQK-----FELLEKKTK 138 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +R I S DF+P +F +A+ Y + E + + +++ R Y + +++ Sbjct: 139 SMMAVRKIRSFDDDFEPPEFAAQAQEIYIQAHNLLMEKNKYKLREIITERAYPEMMHNVT 198 Query: 144 TRKSNEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLI 196 K ++ + + + + ++N +T+R Q I A YD+ L+ Sbjct: 199 D-----KTIRWKFLKSLEPPRVVHARCTDVISKDNIFGQVTVRFHTQQILAIYDRFGRLM 253 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 + ++ F +++ W L Sbjct: 254 HGSEIVEKDCLEYVVFEKHLSNEYGVWRL 282 >gi|299531492|ref|ZP_07044898.1| import inner membrane translocase, subunit [Comamonas testosteroni S44] gi|298720455|gb|EFI61406.1| import inner membrane translocase, subunit [Comamonas testosteroni S44] Length = 325 Score = 56.0 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 22/197 (11%), Positives = 61/197 (30%), Gaps = 21/197 (10%) Query: 42 SGFFSGKYVFSKRDERGIITLGKGKKKDNLD--SINELFPI--GTRLNKVMR--DIVSVY 95 +G G + + +G + I E G+ + + V Sbjct: 140 AGNLGGDVNAPQARQYNPEKVGNDASARPWEQNHIPEAAAAAGGSMIGSALSGSQNWGVP 199 Query: 96 TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS--NEKNVK 153 DFD + FL A+ ++ + ++ + + ++ + + LS R+S + Sbjct: 200 ADFDAEGFLTAAKRNFVTLQSAWDRSDITTLRSMMTDEMLAEIRSQLSERESQRAGEPNH 259 Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213 + ++ I D +++ N ++ ++ ++W Sbjct: 260 TDVLMI-DAQLLGIEDLGNGYMASVEFS-----------GMIREEASAGPSPFREVWNMT 307 Query: 214 RNIPPSNPNWVLISTKL 230 + W++ + Sbjct: 308 KP-KSGTSGWLVAGVQA 323 >gi|17545178|ref|NP_518580.1| hypothetical protein RSc0459 [Ralstonia solanacearum GMI1000] gi|17427469|emb|CAD13987.1| hypothetical transmembrane protein [Ralstonia solanacearum GMI1000] Length = 356 Score = 56.0 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 43/134 (32%), Gaps = 15/134 (11%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 DFD + FL A+ + + ++ G ++ I + ++ + L+ R + Sbjct: 236 DFDTQAFLRNAKVYFVRLQAAWDAGNLNDIREFTTPEMFAEIKMDLTDR---GTVPNKTD 292 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 V + +++ ++R ++ ++W + Sbjct: 293 VVSVEAELLGIETHPTEYLASVRFS-----------GMIREETSAPAQPFAEVWNLTKPT 341 Query: 217 PPSNPNWVLISTKL 230 S WVL + Sbjct: 342 QGSG-GWVLAGIQQ 354 >gi|154247196|ref|YP_001418154.1| import inner membrane translocase subunit Tim44 [Xanthobacter autotrophicus Py2] gi|154161281|gb|ABS68497.1| import inner membrane translocase subunit Tim44 [Xanthobacter autotrophicus Py2] Length = 325 Score = 55.7 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 15/135 (11%) Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164 +++E I + + ++ D L + S V + + Sbjct: 194 DAFERLLGIIQGAVSREDQAELRANTTPEMFGYLADELRENAERGLRNQVSDVKLLQGDV 253 Query: 165 INASIEENTVYITI--RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222 A E N Y T+ R + + ++S G+ ++WTFVR+ + P Sbjct: 254 AEAWREGNREYATVAMRYASRDVMLDR-ASGKVVSGAA-GIGESTEVWTFVRD-RIAGPT 310 Query: 223 ------WVLISTKLG 231 W L + + Sbjct: 311 GGAAGLWRLSAIQGA 325 >gi|187922657|ref|YP_001894299.1| import inner membrane translocase subunit Tim44 [Burkholderia phytofirmans PsJN] gi|187713851|gb|ACD15075.1| import inner membrane translocase subunit Tim44 [Burkholderia phytofirmans PsJN] Length = 330 Score = 55.7 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 62/193 (32%), Gaps = 23/193 (11%) Query: 46 SGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK--------VMRDIVSVYTD 97 + +L G + + P G+ L + + V Sbjct: 149 RKRDSAQPAYAGSSPSLNSGGTGYSQEPRYSAPPTGSYLEQQGNPLNTPTINAAPVVPAG 208 Query: 98 FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157 FD + FL A+ + + ++ G I + ++ + LS+R + + ++ +V Sbjct: 209 FDSEAFLRNAKVYFVRLQAAWDVGNTEDIREFTTPEMFAEVKVDLSSRGA--ETNQTDVV 266 Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217 ++ +++ N + ++R L+ + +++W + Sbjct: 267 QLN-AELLGVEERANEYFASVRFS-----------GLIREAPGAAAEPFVEVWNLSK-AN 313 Query: 218 PSNPNWVLISTKL 230 W+L + Sbjct: 314 RPGEGWLLAGIQQ 326 >gi|260220358|emb|CBA27818.1| hypothetical protein Csp_A04170 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 319 Score = 55.7 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 74/231 (32%), Gaps = 31/231 (13%) Query: 14 LLFAFITFFVFLQLRGVLGKKTGNE--KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71 LL + + + +R +K + PF+ +G + +G Sbjct: 104 LLALGVMMLIGMFMRS---RKPAAQAASPFAFQGAGPAPVQDLKQYRAENVGNDASARPW 160 Query: 72 DSINELFPIGTRLNKVMRDIVSV---------YTDFDPKDFLNEARNSYEAIVDSFFEGK 122 + + +F + I S FD + FL A+ ++ + ++ Sbjct: 161 ERSSMVFEAPQPAAQGGSMIGSALMGSQTWGVPAGFDTEGFLKSAKANFVTLQAAWDRSD 220 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSN-EKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 V A+ ++ + ++ L+ R+++ V + V + D +++ + ++ Sbjct: 221 VAALRAMMTDDMTREIQTQLAERETHTGAGVNHTDVVMIDARLLGIEELPDEYMASVEFS 280 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIW--TFVRNIPPSNPNWVLISTKL 230 ++ ++W T +N W++ + Sbjct: 281 -----------GMIREEPSAGPSPFREVWNMTKAKNGSSG---WLVAGVQA 317 >gi|209880173|ref|XP_002141526.1| Tim44-like domain-containing protein [Cryptosporidium muris RN66] gi|209557132|gb|EEA07177.1| Tim44-like domain-containing protein [Cryptosporidium muris RN66] Length = 452 Score = 55.7 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 48/139 (34%), Gaps = 14/139 (10%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNS-YEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T ++++ V F+ +F+ I+D++ G + Y + Sbjct: 279 TEFALAIKEMRKVDPTFNTVEFIETVETVIIPHIIDAYLVGNDDVLRLHCGITAYAALSA 338 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINA------SIEENTVY-------ITIRIVGQFISA 187 S R+S + + +L+ I ++ + A S + N Q I+ Sbjct: 339 SCKERRSMKLKLDPTLLLIRNVDLKGAKRWNVNSNDSNEYNNFNSYPWFIFTFSTQQINC 398 Query: 188 SYDKDNLLISSDPEIFGKV 206 D + ++S + +V Sbjct: 399 LRDYEGKVVSGSVDDIREV 417 >gi|311103718|ref|YP_003976571.1| Tim44-like domain-containing protein [Achromobacter xylosoxidans A8] gi|310758407|gb|ADP13856.1| Tim44-like domain protein [Achromobacter xylosoxidans A8] Length = 334 Score = 55.7 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 72/220 (32%), Gaps = 20/220 (9%) Query: 13 ILLFAFI-TF-FVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 +L+ A + F+ +LRG G +T + F+G + + R + Sbjct: 126 LLIAAVVFAVMFIIRRLRGA-GPRTATQGAFNGSNNTPGQQQQPMWRESLKPAAPAAAAA 184 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + + V DFD +FL +A++ + I + G + + + Sbjct: 185 VAAPVAAAAPAAMPKAGDDNNWFVPGDFDTPNFLKQAKDQFVRIQAVWDSGSTDGLREFL 244 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 + + L+ R + + L+ +++ + ++R G Sbjct: 245 TDDLITELKPQLAERGAAPNKTEVVLLN---AEMLGIETVSDGHLASVRFSGMLR----- 296 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + + ++W P+N W+L + Sbjct: 297 ------EAPGAEAFRFEEVWNL---FKPANGGWLLAGIQQ 327 >gi|296476478|gb|DAA18593.1| 39S ribosomal protein L45, mitochondrial precursor [Bos taurus] Length = 306 Score = 55.3 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 55/144 (38%), Gaps = 12/144 (8%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I +F KDF +A++ + + LV + D + Sbjct: 122 IRRIKESDPNFKVKDFPEKAQDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIK---- 177 Query: 148 NEKNVKSSLV-GIDDMKIINAS----IEENTV--YITIRIVGQFISASYDKDNLLISSDP 200 K V+ S V ++ +++ + ++ +T+R+ + A YD+ L+ Sbjct: 178 -YKTVRWSFVESLEPPQVVQVRCSSLVTKSNAYGQVTVRMHTRQTLAIYDRFGRLMYGQE 236 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWV 224 ++ V++ F +++ +W Sbjct: 237 DVPRDVLEYVVFEKHLANPYGSWR 260 >gi|310821532|ref|YP_003953890.1| hypothetical protein STAUR_4283 [Stigmatella aurantiaca DW4/3-1] gi|309394604|gb|ADO72063.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 637 Score = 55.3 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 54/143 (37%), Gaps = 4/143 (2%) Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 + + ++ + F+ + L + R+ + + +++F+ ++ + + YQ FN Sbjct: 114 DQSVQEWVQALKRKDPQFEVQGVLAKVRHLFPLLQEAWFKRELTPVRPFLSDATYQRFNV 173 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS----ASYDKDNLLI 196 L + + + D +II S E + IRI + A L Sbjct: 174 QLQLMAAQGVRDAICDIRLLDARIIGLSQSEWFDSLQIRIQAEMRDTDVPADASDAQALA 233 Query: 197 SSDPEIFGKVIDIWTFVRNIPPS 219 ++ ++WTFVR + Sbjct: 234 AAQRAPLESFTEVWTFVRKPGAT 256 >gi|302686218|ref|XP_003032789.1| hypothetical protein SCHCODRAFT_54972 [Schizophyllum commune H4-8] gi|300106483|gb|EFI97886.1| hypothetical protein SCHCODRAFT_54972 [Schizophyllum commune H4-8] Length = 485 Score = 55.3 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 57/172 (33%), Gaps = 10/172 (5%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 E P F E +++ + E T +V+R + ++ Sbjct: 260 ENPVLRSFVSMRQAYDESENPVVSTMRSVTSTIGSWFEE-----TEQAQVLRMMKAIDPT 314 Query: 98 FDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155 FD + F E R Y +VD++ A++ Y ++ +S Sbjct: 315 FDREQFERELRE-YIVPEVVDAYLSADQKALKDWCSEATYNVLWATMEHYLKQGLVSESK 373 Query: 156 LVGIDDMKIINASIEENTVYI-TIRIVGQFISASYD-KDNLLISSDPEIFGK 205 ++ I + I + I +N + + ++ Q + + K + + + Sbjct: 374 VLDIRQVDISDGKILDNDIPVYLVQFATQEVLLFRNIKTGEVAVGAEDKVEQ 425 >gi|237801765|ref|ZP_04590226.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806703|ref|ZP_04593407.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024624|gb|EGI04680.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027817|gb|EGI07872.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 280 Score = 55.3 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 65/221 (29%), Gaps = 37/221 (16%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F IL+ I F+ + ++ ++P Y G Sbjct: 95 LFDILIMGLIA-FLIFRFIA---RRRQQQQPKMAPAGAPYQRETSQPTQNPIFGSSSPAS 150 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 +IN F+ + FL AR ++++ + ++ I + Sbjct: 151 APPAINAPA------------------WFNEERFLEAARGHFQSLQQHWDANEMDKIAEF 192 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V ++ Q R +S+ + ++++ + T+ G ++ + Sbjct: 193 VTPQMLQFLK---KERADLGDGFQSTYIENLNVQLDGVDDRADKTIATLTFSGVSKTSRF 249 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D + S W R + N W++ + Sbjct: 250 D-QGEVFSES----------WNMER-LQGDNQPWLVAGIRQ 278 >gi|303256401|ref|ZP_07342415.1| Tim44 domain protein [Burkholderiales bacterium 1_1_47] gi|302859892|gb|EFL82969.1| Tim44 domain protein [Burkholderiales bacterium 1_1_47] Length = 327 Score = 55.3 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 18/190 (9%), Positives = 59/190 (31%), Gaps = 24/190 (12%) Query: 42 SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPK 101 + F + + R++ + +D ++ + DF+ + Sbjct: 162 ADFGQSRSEAAVREQPAFNPAQAVRPGSAMDQFSDEPAAASESTYG------APADFNQE 215 Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDD 161 +FLN + ++ + ++ G + + ++ + R+ N+ + +V ++ Sbjct: 216 EFLNMSTAYFKMLQKAWDSGDMDDLANYTTDDLFIELTH--KRREIKGVNL-TEIVNLN- 271 Query: 162 MKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP 221 + ++ G ++ ++ +IW V+ Sbjct: 272 ASLAGFETTPTEYVASVLFTGSL-----KENGEP--------TEIKEIWNLVKP-KEGKT 317 Query: 222 NWVLISTKLG 231 W+L + Sbjct: 318 GWLLAGIQQA 327 >gi|171059204|ref|YP_001791553.1| import inner membrane translocase subunit Tim44 [Leptothrix cholodnii SP-6] gi|170776649|gb|ACB34788.1| import inner membrane translocase subunit Tim44 [Leptothrix cholodnii SP-6] Length = 333 Score = 54.9 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 22/186 (11%), Positives = 59/186 (31%), Gaps = 19/186 (10%) Query: 47 GKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNE 106 + + G G+ ++ + P + ++ DFD F Sbjct: 163 PAAMQRSNAQEGSAAASFGQAGNSAGFNSASAPAFEPIGAAPTAAANLPADFDQAGFERI 222 Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN 166 A+ + + + G ++ + ++ L R + + V ++++ Sbjct: 223 AKMIFIRMQAANDSGDLNDLRSFTTPEMFAHIRLELQERGNAPQTTDVVDVA---AEVLD 279 Query: 167 ASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV--RNIPPSNPNWV 224 + + + +++R GQ + ++S +IW V R+ NW Sbjct: 280 LTRDTDRDIVSVRYHGQI----REAAGAPVTS-------FDEIWHLVQPRD-GSR--NWA 325 Query: 225 LISTKL 230 + + Sbjct: 326 ISGIQQ 331 >gi|218672995|ref|ZP_03522664.1| putative transmembrane TIM family protein [Rhizobium etli GR56] Length = 113 Score = 54.9 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 6/113 (5%) Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI--R 179 + +L + L +N + S V + I A E+ Y T+ R Sbjct: 1 DYGTLRRLTTPEAMSYLAEELGENATNGVRNRVSDVKLLQGDIAEAWREDGQEYATLAMR 60 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D ++S D + ++WTFVR W L + + E Sbjct: 61 YSSIDAMVERDS-GRVVSGDDRQPSESTEVWTFVRKSGAD---WKLAAIQGTE 109 >gi|255542538|ref|XP_002512332.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223548293|gb|EEF49784.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 619 Score = 54.9 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 45/120 (37%), Gaps = 9/120 (7%) Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151 + + EA Y+ I G +++ K V ++Y + + + R+S Sbjct: 153 KLRKSGYSKHQLYKEAIELYKEISTMIANGDKNSLRKAVTEKMYSELKNEIKQRESMWSK 212 Query: 152 VKSSLVG-IDDMKIINASIEENTV--------YITIRIVGQFISASYDKDNLLISSDPEI 202 V LV + ++ + A + +T+ ++ + +YD + +++ D Sbjct: 213 VYWELVEPVIKIRTLRARLIGVDRSDFSKVFIQLTLELLTKQKFEAYDSKDTVVAGDKTK 272 >gi|331001471|ref|ZP_08325089.1| Tim44-like domain protein [Parasutterella excrementihominis YIT 11859] gi|329568200|gb|EGG50017.1| Tim44-like domain protein [Parasutterella excrementihominis YIT 11859] Length = 310 Score = 54.9 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 18/190 (9%), Positives = 59/190 (31%), Gaps = 24/190 (12%) Query: 42 SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPK 101 + F + + R++ + +D ++ + DF+ + Sbjct: 145 ADFGQSRSEAAVREQPAFNPAQAVRPGSAMDQFSDEPAAASESTYG------APADFNQE 198 Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDD 161 +FLN + ++ + ++ G + + ++ + R+ N+ + +V ++ Sbjct: 199 EFLNMSTAYFKMLQKAWDSGDMDDLANYTTDDLFIELTH--KRREIKGANL-TEIVNLN- 254 Query: 162 MKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP 221 + ++ G ++ ++ +IW V+ Sbjct: 255 ASLAGFETTPTEYVASVLFTGSL-----KENGEP--------TEIKEIWNLVKP-KEGKT 300 Query: 222 NWVLISTKLG 231 W+L + Sbjct: 301 GWLLAGIQQA 310 >gi|241999542|ref|XP_002434414.1| conserved hypothetical protein [Ixodes scapularis] gi|215497744|gb|EEC07238.1| conserved hypothetical protein [Ixodes scapularis] Length = 333 Score = 54.9 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 68/200 (34%), Gaps = 17/200 (8%) Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93 + E+P SG G + ++ + + L G + V R I S Sbjct: 86 RVWMERPIYTSCSGGLFDPYVPPEGDGKMSLLSQEGAMQRMRRLEKKGRSVMNV-RKIRS 144 Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153 DF +F +A+ Y + + E + +LV Y + ++ K ++ Sbjct: 145 YEDDFHLAEFAEQAQQIYIDVHRALAEKNKDKLHELVTENCYPELMQNVV-----NKTLR 199 Query: 154 SSLVGIDDMKIINA---------SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFG 204 I ++ A S + +T+R+ Q A YD+ L+ + Sbjct: 200 WQF--IKSLEPPRAVHVRCEDLISKDNMFGQVTVRMHTQQTLAVYDRFGRLMHGSEVMAK 257 Query: 205 KVIDIWTFVRNIPPSNPNWV 224 V++ F +++ W Sbjct: 258 DVLEYVVFEKHLSDLYGTWR 277 >gi|262283507|ref|ZP_06061273.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|262260998|gb|EEY79698.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 310 Score = 54.9 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 47/131 (35%), Gaps = 7/131 (5%) Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145 + +R + +FD + FL++ + Y + ++ E ++ L +Y + L Sbjct: 117 EAIRQLKQQDPNFDEERFLSQVKVIYLRLQSAWTEKDWASVRGLESPSLYDQHSTQLQEH 176 Query: 146 KSNEKNVKSSLVGIDDMKIINASIEE-NTVYITIRIVGQFISASYDKD-NLLISSDPEIF 203 + V +++ KI + + + + D + +I DP Sbjct: 177 IRAKTTNVLERVRVENSKIKDFYPNPQGHDRLEVILSSTMRDYIRDDETGRIIEGDP--- 233 Query: 204 GKVIDIWTFVR 214 D++T R Sbjct: 234 --TKDLFTVYR 242 >gi|84998204|ref|XP_953823.1| mitochondrial inner membrane subunit [Theileria annulata] gi|65304820|emb|CAI73145.1| mitochondrial inner membrane subunit, putative [Theileria annulata] Length = 395 Score = 54.9 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 51/125 (40%), Gaps = 2/125 (1%) Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAIEKLVDSRVYQDFN 139 T L +R++ + F+ D + + +V+S+ +G A++ + N Sbjct: 223 DTSLASALREMKRLDPSFNLPDLVELVEHVIAPHVVESYLKGDGEALKLHCGEVAFNILN 282 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINA-SIEENTVYITIRIVGQFISASYDKDNLLISS 198 S+ R + + S++ + ++++ ++E ++ Q I+ D + + Sbjct: 283 TSIKERNLQKLVLDPSILILKNVELKGGMKVKEGDPWLIFNFTTQQINCLRDTKGKVCAG 342 Query: 199 DPEIF 203 + ++ Sbjct: 343 NCDVI 347 >gi|332525837|ref|ZP_08401978.1| import inner membrane translocase subunit Tim44 [Rubrivivax benzoatilyticus JA2] gi|332109388|gb|EGJ10311.1| import inner membrane translocase subunit Tim44 [Rubrivivax benzoatilyticus JA2] Length = 321 Score = 54.9 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 26/223 (11%), Positives = 67/223 (30%), Gaps = 22/223 (9%) Query: 11 FLILLFAFITFFVF-LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 I L A + FFV LR + G + +G Sbjct: 113 LTIALLAVVAFFVIRFLLR-----RFGPRPAAAPAAAGVGALRTGPADWTPPPAPVSPTP 167 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVY--TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 + R + + FD + F A+ + + + + + Sbjct: 168 VTPVPSAAPVAADAPVAAERTLAPAFVPAAFDSESFERVAKTIFVRLQAANDSADLDDLR 227 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 + ++ + L R + +++ V + K+++ + E+ +++R VG+ Sbjct: 228 RFTTPEMFAELKMDLQDR---GSSTQTTDVVEVEAKVVDVAEEDGRQIVSVRYVGR---- 280 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ ++W V+ + + W + + Sbjct: 281 VREEAGA-------EPVAFDEVWHLVKPVGDDSRGWAIAGIEQ 316 >gi|91786763|ref|YP_547715.1| import inner membrane translocase subunit Tim44 [Polaromonas sp. JS666] gi|91695988|gb|ABE42817.1| import inner membrane translocase, subunit Tim44 [Polaromonas sp. JS666] Length = 333 Score = 54.5 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 21/207 (10%), Positives = 67/207 (32%), Gaps = 29/207 (14%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKK--------DNLDSINELFPIGTRLNKVM- 88 ++PF+ +G + + + D G+ + + Sbjct: 140 QEPFAFQGAGNAATPRNYSPENVGNDASARPWERSGMAFDANRDAGATPATGSMIGSALL 199 Query: 89 -RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 V FD + FL ++ ++ + D++ + ++ ++ + + L+ R+S Sbjct: 200 GTQTWGVPAGFDAEGFLKASKANFVTLQDAWDRSDIQSLRAMMTDDMLEQIKAQLADRES 259 Query: 148 N--EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 + ++ +V ++ +++ +T ++ ++ Sbjct: 260 HTGGVVNRTEVVMLN-AQLLGIEELSDTYMASVEFS-----------GMIREDASAGASP 307 Query: 206 VIDIW--TFVRNIPPSNPNWVLISTKL 230 ++W T RN W++ + Sbjct: 308 FREVWNMTKPRNGGSG---WLVAGVQA 331 >gi|240849189|ref|NP_001155742.1| 39S ribosomal protein L45, mitochondrial [Acyrthosiphon pisum] gi|239789330|dbj|BAH71295.1| ACYPI008057 [Acyrthosiphon pisum] Length = 330 Score = 54.5 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 28/206 (13%), Positives = 70/206 (33%), Gaps = 24/206 (11%) Query: 33 KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIV 92 + E+ +G + G + I EL + +R I Sbjct: 89 TRPWIERTTFINNTGSIIEPYVPPEGDGKISPISTAGAKQKI-ELLKKKKDTWQAIRKIR 147 Query: 93 SVYTDFDP-KDFLNEARNSY-----EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 +F+ +F+ +A++ Y + + + V + Y + ++ Sbjct: 148 QNEEEFELYPEFITKAQDIYLKAHTTMVNK-----DKQNLLQYVTEKAYVEMLHNID--- 199 Query: 147 SNEKNVKSSLV-GIDDMKIINASI------EENTVYITIRIVGQFISASYDKDNLLISSD 199 K ++ S + I+ ++++A + + IT+R + + +D+ LI Sbjct: 200 --NKTLRWSFIKSIEPPRVVHARVTDIITQDNLFAQITVRFHTKQTLSVFDRFGRLIFGS 257 Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWVL 225 + V++ F ++I W + Sbjct: 258 DVVAKDVLEYVVFEKHIVNQYGMWRI 283 >gi|325690393|gb|EGD32397.1| hypothetical protein HMPREF9382_1351 [Streptococcus sanguinis SK115] Length = 237 Score = 54.5 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 45/120 (37%), Gaps = 2/120 (1%) Query: 85 NKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST 144 + +R++ + FD + FL++A+ Y + ++ E ++ L +Y+ L Sbjct: 43 QEAIRELKRLDPYFDEESFLSQAKAVYLHLQSAWTEKDWASVRNLESPSLYEQHRTQLQE 102 Query: 145 RKSNEKNVKSSLVGIDDMKIIN-ASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEI 202 + V ++D KI + + + + + D + +I DP Sbjct: 103 HIRAKTTNVLERVCVEDSKIKDFYPNSQGHDRLEVILSSTMRDYIKDDETGRIIEGDPTK 162 >gi|307184938|gb|EFN71203.1| Probable 39S ribosomal protein L45, mitochondrial [Camponotus floridanus] Length = 201 Score = 54.5 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 12/130 (9%) Query: 103 FLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV-GIDD 161 FL EA Y+ ++ K + K V Y +L K + + ++ Sbjct: 20 FLEEATEIYQKAHEALAAKKKGMLIKYVTESAYPKMIHNLMD-----KTIHWKFLESLEP 74 Query: 162 MKIINASI------EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRN 215 ++++A E +T+R Q I A YD+ LI + V++ F ++ Sbjct: 75 ARVVHARTTDVITKENVFAQLTVRFHTQQILAVYDRFGRLIQGSEILRKDVLEYIVFEKH 134 Query: 216 IPPSNPNWVL 225 + W + Sbjct: 135 LANEYGAWRI 144 >gi|327275540|ref|XP_003222531.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like [Anolis carolinensis] Length = 316 Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 61/153 (39%), Gaps = 26/153 (16%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDS------FFEGKVHAI-EKLVDSRVYQDFN 139 +R I DF K F +A++ + +++ F + K+HA+ + + Sbjct: 133 AIRKIKDYDPDFSTKTFAEKAQDIF---IEAHNNLTNFNKEKMHALVTEYCFPDM----- 184 Query: 140 DSLSTRKSNEKNVKSSLV-GIDDMKIINA------SIEENTVYITIRIVGQFISASYDKD 192 R + K ++ S + ++ +++ S + +T+R+ + A YD+ Sbjct: 185 ----VRGNRYKTIRWSFLESLEPPRVVQVRCPTMVSKDNLYGQVTVRMHSRQTLAIYDRF 240 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 L+ +I V++ F R++ W L Sbjct: 241 GRLMYGGEQIPKDVLEYLVFERHLVNPYGQWRL 273 >gi|83320119|ref|NP_001030272.1| 39S ribosomal protein L45, mitochondrial precursor [Bos taurus] gi|88932615|sp|Q3T142|RM45_BOVIN RecName: Full=39S ribosomal protein L45, mitochondrial; Short=L45mt; Short=MRP-L45; Flags: Precursor gi|74267993|gb|AAI02137.1| Mitochondrial ribosomal protein L45 [Bos taurus] Length = 306 Score = 54.1 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 12/144 (8%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I +F KDF +A++ + + LV + D + Sbjct: 122 IRRIKESDPNFKVKDFPEKAQDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIK---- 177 Query: 148 NEKNVKSSLV-GIDDMKIINAS------IEENTVYITIRIVGQFISASYDKDNLLISSDP 200 K V S V ++ +++ +T+R+ + A YD+ L+ Sbjct: 178 -YKTVSWSFVESLEPPQVVQVRCSSLVTKSNTYGQVTVRMHTRQTLAIYDRFGRLMYGQE 236 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWV 224 ++ V++ F +++ +W Sbjct: 237 DVPRDVLEYVVFEKHLANPYGSWR 260 >gi|46581175|ref|YP_011983.1| hypothetical protein DVU2771 [Desulfovibrio vulgaris str. Hildenborough] gi|46450596|gb|AAS97243.1| conserved hypothetical protein [Desulfovibrio vulgaris str. Hildenborough] Length = 321 Score = 54.1 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 49/136 (36%), Gaps = 19/136 (13%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD + F+ A+ ++ + S+ + + I + V + + + ++ Sbjct: 200 GFDIEQFIKGAKMAFTRLQASWDKRDLEDISQFSTPAVLD----EIRRQAEADPVPSTTE 255 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP--EIFGKVIDIWTFVR 214 + + + ++ E T+ ++L+ DP + V ++W FVR Sbjct: 256 ILLVNANLLGVVEENGQQTATVFF------------DVLLREDPRQDAPTSVREVWHFVR 303 Query: 215 NIPPSNPNWVLISTKL 230 + + W L + Sbjct: 304 PVKGTG-MWQLDGIQQ 318 >gi|120601588|ref|YP_965988.1| import inner membrane translocase, subunit Tim44 [Desulfovibrio vulgaris DP4] gi|120561817|gb|ABM27561.1| import inner membrane translocase, subunit Tim44 [Desulfovibrio vulgaris DP4] gi|311234849|gb|ADP87703.1| import inner membrane translocase subunit Tim44 [Desulfovibrio vulgaris RCH1] Length = 311 Score = 54.1 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 49/136 (36%), Gaps = 19/136 (13%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD + F+ A+ ++ + S+ + + I + V + + + ++ Sbjct: 190 GFDIEQFIKGAKMAFTRLQASWDKRDLEDISQFSTPAVLD----EIRRQAEADPVPSTTE 245 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP--EIFGKVIDIWTFVR 214 + + + ++ E T+ ++L+ DP + V ++W FVR Sbjct: 246 ILLVNANLLGVVEENGQQTATVFF------------DVLLREDPRQDAPTSVREVWHFVR 293 Query: 215 NIPPSNPNWVLISTKL 230 + + W L + Sbjct: 294 PVKGTG-MWQLDGIQQ 308 >gi|226942212|ref|YP_002797285.1| Tim44-like domain-containing protein [Azotobacter vinelandii DJ] gi|226717139|gb|ACO76310.1| Tim44-like domain protein [Azotobacter vinelandii DJ] Length = 284 Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 22/183 (12%), Positives = 56/183 (30%), Gaps = 18/183 (9%) Query: 48 KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107 + + ++R + G + + G R + F+ + FL A Sbjct: 118 RLIVARRRKLHPAVAGHAPMQRETPAQPRPAATGAAQR---RAPIQAPAWFNEQRFLEAA 174 Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167 R + A+ + ++ I + V ++ + F R +S+ + +++ Sbjct: 175 RQHFTALQQHWDANELDKIAEFVTPQMLE-FIR--KERAELGDGFQSTYIDNLQVQLDGV 231 Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 + T+ G +S + + W R + P W++ Sbjct: 232 DDLADKTVATLTFSG-VSKSSRFEQGE----------TFSESWRMERRQGENQP-WLIAG 279 Query: 228 TKL 230 + Sbjct: 280 IRQ 282 >gi|170699198|ref|ZP_02890251.1| import inner membrane translocase subunit Tim44 [Burkholderia ambifaria IOP40-10] gi|170135923|gb|EDT04198.1| import inner membrane translocase subunit Tim44 [Burkholderia ambifaria IOP40-10] Length = 218 Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 71/234 (30%), Gaps = 29/234 (12%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M + +I L A I +R + ++ E +S S S G Sbjct: 1 MMANVIVIALLAMIG---IWLVRKFMNRRRSQEPAYSVGGSASSSGSYSQSPSFQQGSTG 57 Query: 66 KKKDNLDSINELFPIG---------TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116 S G + + V FD + FL A+ + + Sbjct: 58 NNYAGSGSSYANEAQGVFGGGAAAAGAAGAMAGAPLQVPAGFDTEAFLRSAKVYFVRLQA 117 Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 ++ +G + I + ++ + L +R ++ +V + D +++ Sbjct: 118 AWDQGNLADIREFTTPEMFAEIKIDLDSR--GNDANQTDVVQL-DAELVAIEDRGIEQSA 174 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R G I S + + ++W + + W+L + Sbjct: 175 SVRFHG-LIRESANAPAAPLD----------EVWNLSK---SGSQGWLLAGIQQ 214 >gi|188581463|ref|YP_001924908.1| import inner membrane translocase subunit Tim44 [Methylobacterium populi BJ001] gi|179344961|gb|ACB80373.1| import inner membrane translocase subunit Tim44 [Methylobacterium populi BJ001] Length = 318 Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 66/229 (28%), Gaps = 41/229 (17%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFS-GKYVFSKRDERGIITLGKGKK 67 ++ + F + ++ + +G + + + G Sbjct: 124 FQIGLIALLVMLAVRFFR------RRQEGQPAMAGNSAYARSGPPPQGGANPGMNPMGGG 177 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE----AIVDSFFEGKV 123 + + + P DF ++E I ++ V Sbjct: 178 YGGGAARPQPVQVQ------------------PDDF-----QAFERSLNEIQAAYGREDV 214 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 A+ +L + F + L + + S V + + A E + T+ + Sbjct: 215 AALRRLATPEMVGYFEEDLRANAARGVVNRISDVKLLQGDLSEAWREGRVEFATVAMRFS 274 Query: 184 FISASYDKDNLL-ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 +++ + + P + + WTFVR W+L + + G Sbjct: 275 LRDEVFERATNRHVENGP---QEAKEFWTFVREPGGP---WLLSAIQQG 317 >gi|148284459|ref|YP_001248549.1| hypothetical protein OTBS_0806 [Orientia tsutsugamushi str. Boryong] gi|146739898|emb|CAM79872.1| hypothetical protein OTBS_0806 [Orientia tsutsugamushi str. Boryong] Length = 211 Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 26/143 (18%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 + + S F+ F N A N + I+++ I L+D R F+ S Sbjct: 93 LIKLKSKVPSFNINRFYNTAINVIKMIIEAVQNVDYKTIFSLLDKRFVDQFHQM----SS 148 Query: 148 NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 N+ + + + + N ++I IRI I+ + K+ Sbjct: 149 KYANIHVNSINFKLSNLNS---LGNNIFIKIRIE--------------INGN-----KLK 186 Query: 208 DIWTFVRNIPPSNPNWVLISTKL 230 + WTF +NI P W L + + Sbjct: 187 EEWTFSKNITTPGPQWYLSNIEE 209 >gi|239906247|ref|YP_002952987.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1] gi|239796112|dbj|BAH75101.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1] Length = 280 Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 64/224 (28%), Gaps = 35/224 (15%) Query: 20 TFFVFLQLRGVL-GKKTGN----EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSI 74 FV + VL G++ N + P + G + + Sbjct: 76 AMFVLFR---VLSGRRNKNGDQTQAPPRSDDQDDRDDDAPPQNQPPRRGPDMYTNAQATW 132 Query: 75 NELFPIGTRLNKVMRDIVSVYTDF-------DPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 + L R R ++FL A+ +Y I S + Sbjct: 133 DMLRSPDKRPGTPARADGQAAPPAPANAPAGSDEEFLAGAKMAYSRIAASLGGRDFGDLA 192 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 V + + + G D+ +INA++ E G+ + Sbjct: 193 SFVSPAYL----------AELQNTLPQTPAGRPDILLINAALAERRET-----PGRTVMV 237 Query: 188 SYDKDNLLISSDPEIFGKV--IDIWTFVRNIPPSNPNWVLISTK 229 D +++ P + WTF R+ NW+L + + Sbjct: 238 V---DYDVLARQPGATENTTLRERWTFSRDNAAPGANWLLDAMQ 278 >gi|242018556|ref|XP_002429740.1| mitochondrial 50S ribosomal protein L45, putative [Pediculus humanus corporis] gi|212514752|gb|EEB17002.1| mitochondrial 50S ribosomal protein L45, putative [Pediculus humanus corporis] Length = 306 Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 59/194 (30%), Gaps = 26/194 (13%) Query: 47 GKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNE 106 Y D + I G I + R I + ++F+ K F E Sbjct: 69 NPYEPPPGDGKSSIIPKVGST-----CIVDKVKEQKDYMLAKRQITNYDSNFNTKVFPQE 123 Query: 107 ARNSYE---AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG----- 158 A + Y I+ + + + V + + K ++ + Sbjct: 124 AHDIYVKAHTILM---KNDPEELSEYVTESAIMEMMSGIK-----NKTLRWKFIESLEPP 175 Query: 159 -IDDMKIINASIEEN-TVYITIRIVGQFIS---ASYDKDNLLISSDPEIFGKVIDIWTFV 213 I M + E N +T+R + S A YD+ L I V++ F Sbjct: 176 KIVQMSVAPVIQESNLFGQVTVRFHTKQASTMLAIYDRFGRLFYGSETIAKDVLEYVVFE 235 Query: 214 RNIPPSNPNWVLIS 227 ++I W L + Sbjct: 236 KHIVNEYGTWRLHA 249 >gi|239817097|ref|YP_002946007.1| import inner membrane translocase subunit Tim44 [Variovorax paradoxus S110] gi|239803674|gb|ACS20741.1| import inner membrane translocase subunit Tim44 [Variovorax paradoxus S110] Length = 337 Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 27/251 (10%), Positives = 72/251 (28%), Gaps = 42/251 (16%) Query: 7 DSGDFLILLFAFITFFVFLQL---RGVLGKKTGNEKPFSGFFSGKYVF---SKRDERGII 60 + L++ + ++ R +G +P F G S + Sbjct: 100 GFANILLIGLLVMAGLFVWRMFKARSA--ASSGANRPGGFAFEGAGNPANASAPAQYSPA 157 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVY-------------------TDFDPK 101 +G + F G+ + FD Sbjct: 158 NVGNDASARPWERNTAAFDAGSSAHGSSLSAAGAAAGGSMIGSALSGSQSWGIPAGFDVD 217 Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN--EKNVKSSLVGI 159 FL+ A+ ++ + D++ V + ++ + ++ L+ R S+ + K+ +V + Sbjct: 218 GFLSAAKRNFVTLQDAWDRADVSMLRSMMTDDMVEEIRSQLADRASHTGGASNKTEVVML 277 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 D K++ + ++ ++ G ++W + Sbjct: 278 -DAKLLGIEELADAYLASVEFS-----------GMIREDASAGPGPFREVWNMTKP-TSG 324 Query: 220 NPNWVLISTKL 230 W++ + Sbjct: 325 TSGWLVAGVQA 335 >gi|254707405|ref|ZP_05169233.1| calcium-binding EF-hand [Brucella pinnipedialis M163/99/10] Length = 29 Score = 53.3 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 19/29 (65%) Query: 204 GKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ++ D+WTF R+ +PNW L++T+ + Sbjct: 1 VEIKDLWTFARDTNSRDPNWKLVATEAED 29 >gi|330812676|ref|YP_004357138.1| hypothetical protein PSEBR_a5598 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380784|gb|AEA72134.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 291 Score = 53.3 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 67/221 (30%), Gaps = 33/221 (14%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F IL+ A I F+ + F + + + ++ Sbjct: 102 IFDILIMAVIA-FLVFR-----------------FIAARRRKQQEQFAPAGHAPMQREVF 143 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 N + G+ R +++ F+ + F+ AR+ + ++ + ++ I + Sbjct: 144 NQQPASGSIFGGSAAPVAARPVINAPAWFNEQRFIEAARSHFMSLQQHWDANEMDKIAEF 203 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V ++ + R +S+ + +++ + T+ G + + Sbjct: 204 VTPQLLEFLKR---ERAELGDGFQSTYIDNLHVQLDGVDDRADKTIATLTFSGVSKDSRF 260 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 DK + W R + W++ + Sbjct: 261 DKGEA-----------FSESWNMERAQG-DDQPWLVAGIRQ 289 >gi|167718139|ref|ZP_02401375.1| hypothetical protein BpseD_03908 [Burkholderia pseudomallei DM98] Length = 129 Score = 53.3 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 18/143 (12%), Positives = 47/143 (32%), Gaps = 17/143 (11%) Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148 +V FD + FL A+ + + ++ EG + I + ++ + L R + Sbjct: 1 AAAPAVPAGFDTEAFLRNAKVYFVRLQAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAG 60 Query: 149 EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208 ++ +V + D +++ ++R G + + Sbjct: 61 AN--QTDVVQL-DAELLAVEDRGGEHLASVRFHG----LIRETQGAAAE-------PFDE 106 Query: 209 IWTFVRNIPPSNPNWVLISTKLG 231 +W + + W+L + Sbjct: 107 VWNLSK---SGSQGWLLAGIQQA 126 >gi|325522769|gb|EGD01254.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. TJI49] Length = 124 Score = 53.3 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 47/134 (35%), Gaps = 17/134 (12%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD FL A+ + + ++ +G + I + ++ + L +R + ++ + Sbjct: 4 GFDADAFLRSAKVYFVRLQAAWDQGNLADIREFTTPEMFAEIKIDLDSR--GNEANQTDV 61 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 V + D +++ ++R G I S + ++W ++ Sbjct: 62 VQL-DAELVAVEDRGIEQSASVRFHG-LIRESANAPAEPFD----------EVWNLSKSG 109 Query: 217 PPSNPNWVLISTKL 230 W+L + Sbjct: 110 GQG---WLLAGIQQ 120 >gi|321469612|gb|EFX80592.1| hypothetical protein DAPPUDRAFT_303989 [Daphnia pulex] Length = 327 Score = 53.3 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 68/195 (34%), Gaps = 23/195 (11%) Query: 34 KTGNEKPFS-----GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVM 88 ++ E+P F + +TLG K+ EL ++ + Sbjct: 86 RSWMERPVFVSATSSVFEAYVPPEGDGKLSALTLGGAKQS------MELLSKKSKSMMAV 139 Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148 R I S DF K F EA+ Y + E + + V Y D L Sbjct: 140 RKIKSFEEDFSTKYFPEEAQEIYLKAHKALAEKDDDTLHQCVTELCYPLMTDDL-----R 194 Query: 149 EKNVKSSLV-GIDDMKIINAS------IEENTVYITIRIVGQFISASYDKDNLLISSDPE 201 V+ + ++ ++++A E +T+R Q A YD+ LI + Sbjct: 195 SCTVRWQFLKSLEPPRVVHARCTEVINKENIFSQVTVRFNTQQTLAVYDRFGRLIYGNEV 254 Query: 202 IFGKVIDIWTFVRNI 216 + V++ F +++ Sbjct: 255 VAKDVLEYVVFEKHL 269 >gi|73853856|ref|NP_001027509.1| 39S ribosomal protein L45, mitochondrial precursor [Xenopus (Silurana) tropicalis] gi|82249321|sp|Q4QQQ4|RM45_XENTR RecName: Full=39S ribosomal protein L45, mitochondrial; Short=L45mt; Short=MRP-L45; Flags: Precursor gi|67867480|gb|AAH98093.1| hypothetical protein mgc108142 [Xenopus (Silurana) tropicalis] Length = 309 Score = 53.3 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 +R + ++F K F +A+ + A + H + LV R Y + R Sbjct: 121 AIRKVKEYDSEFTTKTFPEKAQELFIAAHQCLTKFDRHELHTLVTERCYPEMV-----RG 175 Query: 147 SNEKNVKSSLV-GIDDMKIINAS-----IEENT-VYITIRIVGQFISASYDKDNLLISSD 199 + + ++ S V I+ +++ + N +T+R+ + YD+ ++ Sbjct: 176 NRYRTIQWSFVESIEAPRVVQVRCPEMVSKGNLYAQVTVRMHNKQSLTIYDRFGRVMCGS 235 Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWV 224 E V++ F R++ W Sbjct: 236 -EEPRDVLEYVVFERHMVNPYGTWR 259 >gi|67607228|ref|XP_666797.1| mitochondrial import inner membrane translocase [Cryptosporidium hominis TU502] gi|54657855|gb|EAL36565.1| mitochondrial import inner membrane translocase [Cryptosporidium hominis] Length = 424 Score = 53.3 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 56/142 (39%), Gaps = 21/142 (14%) Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA-----IVDSFFEGKVHAIEKLVDSRVY 135 G +++KV++++ ++ +F DF+ + +E ++S+ + H + Y Sbjct: 251 GNKISKVVKEMKAINPNFKLTDFM----SFFEEYILPKFMESYLKCDEHKLRLHCGDVAY 306 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE------------NTVYITIRIVGQ 183 + ++ K + + ++ + D+++I A I + N Q Sbjct: 307 RQLCSNIKKLKKMGLCLNTKILQLGDVELIGAEISDLMFSFKDCKIQANQPEFMFTFKTQ 366 Query: 184 FISASYDKDNLLISSDPEIFGK 205 I+ D + +IS + + Sbjct: 367 QINYLKDSNGRIISGSIDDIKE 388 >gi|160900892|ref|YP_001566474.1| import inner membrane translocase subunit Tim44 [Delftia acidovorans SPH-1] gi|160366476|gb|ABX38089.1| import inner membrane translocase subunit Tim44 [Delftia acidovorans SPH-1] Length = 338 Score = 53.3 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 21/191 (10%), Positives = 60/191 (31%), Gaps = 17/191 (8%) Query: 42 SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPK 101 S + +Y K + + + IG+ L V FD + Sbjct: 161 SAPLARQYNPEKVGNDASARPWEQNHQPAALASGSGVQIGSALAG--SQNWGVPEGFDTE 218 Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN--EKNVKSSLVGI 159 FL A+ ++ + ++ + ++ ++ + + LS R+ + ++ +V I Sbjct: 219 GFLTAAKRNFVTLQSAWDRSDIASLRAMMTDEMLTEIRGQLSEREVQRPGQPNQTDVVMI 278 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 D +++ N ++ ++ ++W + Sbjct: 279 -DAQLLGIEDLGNDYMASVEFS-----------GMIREDASAGPTPFREVWNMTKP-KSG 325 Query: 220 NPNWVLISTKL 230 + W++ + Sbjct: 326 SSGWLVAGVQA 336 >gi|167892865|ref|ZP_02480267.1| hypothetical protein Bpse7_03801 [Burkholderia pseudomallei 7894] Length = 133 Score = 53.3 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 45/135 (33%), Gaps = 17/135 (12%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD + FL A+ + + ++ EG + I + ++ + L R + ++ + Sbjct: 13 GFDTEAFLRNAKVYFVRLQAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDV 70 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 V + D +++ ++R G + ++W + Sbjct: 71 VQL-DAELLAVEDRGGEHLASVRFHG----LIRETQGAAAE-------PFDEVWNLSK-- 116 Query: 217 PPSNPNWVLISTKLG 231 + W+L + Sbjct: 117 -SGSQGWLLAGIQQA 130 >gi|167737169|ref|ZP_02409943.1| hypothetical protein Bpse14_03836 [Burkholderia pseudomallei 14] Length = 135 Score = 53.3 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 45/135 (33%), Gaps = 17/135 (12%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD + FL A+ + + ++ EG + I + ++ + L R + ++ + Sbjct: 15 GFDTEAFLRNAKVYFVRLQAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDV 72 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 V + D +++ ++R G + ++W + Sbjct: 73 VQL-DAELLAVEDRGGEHLASVRFHG----LIRETQGAAAE-------PFDEVWNLSK-- 118 Query: 217 PPSNPNWVLISTKLG 231 + W+L + Sbjct: 119 -SGSQGWLLAGIQQA 132 >gi|256394912|ref|YP_003116476.1| import inner membrane translocase subunit Tim44 [Catenulispora acidiphila DSM 44928] gi|256361138|gb|ACU74635.1| import inner membrane translocase subunit Tim44 [Catenulispora acidiphila DSM 44928] Length = 448 Score = 53.3 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 62/174 (35%), Gaps = 10/174 (5%) Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 L G + S T++ + + + P+ A Y ++ + Sbjct: 94 LNTGSDRTAHRSDAAAAQRATQIEARVAAVADNDPTYAPEALKARAVWLYTTAQRAWSDR 153 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 +++++ +Y +++ L +S + +V ++++N + V TI Sbjct: 154 DRAVLKQILSPVLYVKWDEELRDYQSRGEINTVDIVSGPSVQMVNIANRAGEVNDTITFR 213 Query: 182 GQFISASYDKDNLLISSDP----EIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 I+A+ + + + + + ++ WT ++ W++ S + Sbjct: 214 ---ITATLNDRVVRANGSHAVRKDGSTRPVEYWTLRKDASGE---WMVASIEQA 261 >gi|18043288|gb|AAH20130.1| Mitochondrial ribosomal protein L45 [Mus musculus] Length = 306 Score = 53.3 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 54/148 (36%), Gaps = 12/148 (8%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 +R I T+F KDF +A++ + + LV + D Sbjct: 121 AIRKIREFDTNFKTKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMV-----WD 175 Query: 147 SNEKNVKSSLV-GIDDMKIINASIEENT------VYITIRIVGQFISASYDKDNLLISSD 199 K V+ V ++ ++++ +T+R+ + A YD+ L+ Sbjct: 176 LKYKTVRWGFVESLEPAQVVHVRCSGLVNQSNMYGQVTVRLHTRQTLAIYDRFGRLMYGQ 235 Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 ++ V++ F R++ +W + + Sbjct: 236 EDVPKDVLEYVVFERHLMNPYGSWRMHA 263 >gi|167814302|ref|ZP_02445982.1| hypothetical protein Bpse9_04118 [Burkholderia pseudomallei 91] Length = 141 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 45/135 (33%), Gaps = 17/135 (12%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD + FL A+ + + ++ EG + I + ++ + L R + ++ + Sbjct: 21 GFDTEAFLRNAKVYFVRLQAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDV 78 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 V + D +++ ++R G + ++W + Sbjct: 79 VQL-DAELLAVEDRGGEHLASVRFHG----LIRETQGAAAE-------PFDEVWNLSK-- 124 Query: 217 PPSNPNWVLISTKLG 231 + W+L + Sbjct: 125 -SGSQGWLLAGIQQA 138 >gi|146280567|ref|YP_001170720.1| hypothetical protein PST_0171 [Pseudomonas stutzeri A1501] gi|145568772|gb|ABP77878.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] gi|327478845|gb|AEA82155.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 280 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 69/218 (31%), Gaps = 37/218 (16%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+F I F+ + L + ++P + + I G Sbjct: 98 ILIFGLIA-FLLFRF---LAARRRQQQPAMAGHAPMQREMPQQPATSIFGGSAAPVAAAP 153 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 IN F+ ++F+ AR + ++ + ++ I + V Sbjct: 154 VINAPA------------------WFNEQNFVAAAREHFLSLQQHWDANEMDKIAEFVTP 195 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 ++ R +S+ IDD++I +++N + +A+ Sbjct: 196 QLLGFLKQ---ERAEIGDAYQST--YIDDLQIQLDGVDDN---------AEKTTATLTFS 241 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + +S + + W R + P W++ + Sbjct: 242 GVAKTSRFDQGEPFSESWRMERVQGENQP-WLVAGIRQ 278 >gi|13385418|ref|NP_080203.1| 39S ribosomal protein L45, mitochondrial precursor [Mus musculus] gi|29611870|sp|Q9D0Q7|RM45_MOUSE RecName: Full=39S ribosomal protein L45, mitochondrial; Short=L45mt; Short=MRP-L45; Flags: Precursor gi|12847109|dbj|BAB27440.1| unnamed protein product [Mus musculus] gi|26349471|dbj|BAC38375.1| unnamed protein product [Mus musculus] gi|74180509|dbj|BAE34190.1| unnamed protein product [Mus musculus] gi|123209263|emb|CAM26393.1| mitochondrial ribosomal protein L45 [Mus musculus] gi|123258869|emb|CAM27000.1| mitochondrial ribosomal protein L45 [Mus musculus] gi|148684129|gb|EDL16076.1| mitochondrial ribosomal protein L45 [Mus musculus] Length = 306 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 53/148 (35%), Gaps = 12/148 (8%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 +R I +F KDF +A++ + + LV + D Sbjct: 121 AIRKIREFDANFKTKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMV-----WD 175 Query: 147 SNEKNVKSSLV-GIDDMKIINASIEENT------VYITIRIVGQFISASYDKDNLLISSD 199 K V+ V ++ ++++ +T+R+ + A YD+ L+ Sbjct: 176 LKYKTVRWGFVESLEPAQVVHVRCSGLVNQSNMYGQVTVRLHTRQTLAIYDRFGRLMYGQ 235 Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 ++ V++ F R++ +W + + Sbjct: 236 EDVPKDVLEYVVFERHLMNPYGSWRMHA 263 >gi|73966162|ref|XP_850801.1| PREDICTED: similar to mitochondrial ribosomal protein L45 [Canis familiaris] Length = 303 Score = 53.0 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 69/205 (33%), Gaps = 18/205 (8%) Query: 33 KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK------ 86 +K G P ++ +G + + + L +L K Sbjct: 61 RKAGLVIPPERLERPLHLACTAGIFDAYVPPEGDARLSSLAKEGLAQRSEQLKKKVASQL 120 Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 +R I +F KDF +A++ + + LV + D + Sbjct: 121 SIRKIREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIK--- 177 Query: 147 SNEKNVKSSLV-GIDDMKIINAS-----IEENT-VYITIRIVGQFISASYDKDNLLISSD 199 K V+ S V ++ +++ + N +T+R+ + A YD+ L+ Sbjct: 178 --YKTVRWSFVESLEPPQVVQVRCSNLLNQGNIYGQVTVRMHTRQTLAIYDRFGRLMYGQ 235 Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWV 224 ++ V++ F +++ +W Sbjct: 236 EDVPRDVLEYVVFEKHLVNPYGSWR 260 >gi|209735096|gb|ACI68417.1| 39S ribosomal protein L45, mitochondrial precursor [Salmo salar] gi|303659089|gb|ADM15945.1| 39S ribosomal protein L45, mitochondrial precursor [Salmo salar] Length = 317 Score = 53.0 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 12/158 (7%) Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 E +R I ++F K F +A+ + ++ + + LV R Sbjct: 116 TEQIKQDAASQLAIRKIKEHESEFTTKAFPVKAQEIFVDAHNALTQFNKEKLHSLVTERC 175 Query: 135 YQDFNDSLSTRKSNEKNVKSSLV-GIDDMKIINASIEENT------VYITIRIVGQFISA 187 Y + R++ K ++ V ++ K+++A + +T+R+ + A Sbjct: 176 YPEMV-----RRNRYKTLRWHFVESLEPPKVVHARCPDMVSKGDMYGQVTVRMHSRQTLA 230 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 Y + L+ E V++ R++ W L Sbjct: 231 VYGRFGRLMMGSEEEPRDVLEYLVLERHLVNHYGMWRL 268 >gi|221103937|ref|XP_002159080.1| PREDICTED: similar to mitochondrial ribosomal protein L45, partial [Hydra magnipapillata] gi|221118615|ref|XP_002159504.1| PREDICTED: similar to mitochondrial ribosomal protein L45, partial [Hydra magnipapillata] Length = 99 Score = 52.6 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 6/80 (7%) Query: 154 SSLV-GIDDMKIINASI-----EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 V ++ ++INA++ + +T+R+ + I D+ N +++ DP+ VI Sbjct: 15 WRFVKEVEKPRVINAALSAVSENDLYAQVTVRLHTEQILTIRDRFNRIVTGDPKTPRSVI 74 Query: 208 DIWTFVRNIPPSNPNWVLIS 227 D F R++P W + Sbjct: 75 DYVVFERHLPDPYGKWRICG 94 >gi|41053493|ref|NP_956601.1| 39S ribosomal protein L45, mitochondrial [Danio rerio] gi|29476850|gb|AAH50166.1| Mitochondrial ribosomal protein L45 [Danio rerio] Length = 251 Score = 52.6 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 55/154 (35%), Gaps = 12/154 (7%) Query: 79 PIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138 P + +R I + F K+F + + + E + LV R Y + Sbjct: 54 PSTSHAQLAIRKIKDYDSTFTSKEFPGIGQQIFIDAHAALTEFNKEKLHSLVTERCYPEM 113 Query: 139 NDSLSTRKSNEKNVKSSLV-GIDDMKIINASIEENT------VYITIRIVGQFISASYDK 191 R + K ++ + ++ +++ A + +T+R+ + A YD+ Sbjct: 114 V-----RGNRYKTLRWRFIESLEPPRLVQARCPDMISKGNLYGQVTVRMHSRQTLAIYDR 168 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 L+ D E V++ R++ W L Sbjct: 169 FGRLMLGDEEEPRDVLEYLVMERHLVNPYGRWRL 202 >gi|268575792|ref|XP_002642876.1| Hypothetical protein CBG15146 [Caenorhabditis briggsae] gi|74784622|sp|Q616T6|RM45_CAEBR RecName: Full=Probable 39S ribosomal protein L45, mitochondrial; Flags: Precursor gi|187027386|emb|CAP33598.1| hypothetical protein CBG_15146 [Caenorhabditis briggsae AF16] Length = 361 Score = 52.6 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 13/142 (9%) Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151 + FD K F +A + YE + + + + + + + Sbjct: 168 KQGFEKFDVKTFCAKAEDIYERAHKAMEARDKKEMYRCITEYAFAKMWPDVE-----NGS 222 Query: 152 VKSSLVGIDDMKIINA--------SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203 V+ LV I + + A + IT+R+ + A YD+ LI + Sbjct: 223 VRFELVSIVEPSRVVAVRCFDNPPKSGNDIAQITVRMHTRQKLALYDRFGGLILGSEDEE 282 Query: 204 GKVIDIWTFVRNIPPSNPNWVL 225 V++ F +I + W L Sbjct: 283 KDVVEYVVFENHIAVVDGEWRL 304 >gi|300309983|ref|YP_003774075.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gi|300072768|gb|ADJ62167.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 242 Score = 52.6 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 70/228 (30%), Gaps = 25/228 (10%) Query: 6 MDSGDFLILLFAFITFFVF--LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 M S + L A FV + +K+ +P + + Sbjct: 31 MISTILTVALIALAIMFVVRMFR------RKSEASQPAPAWAGAAPQAADNASATPQIGS 84 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 K + + + G N V FD F+ A+ + + ++ + + Sbjct: 85 MLKTDQSAAAATQGGFGGGFGNAEQAPAYGVPAGFDTVGFVRNAKTYFIRLQAAWDKADI 144 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 + I + ++ + + R + + ++ +V + D +++ N +++ G Sbjct: 145 NDIREFTTPEMFAELRLQIQERGAA--SNQTDVVSL-DAEVLGVETVGNDYLASVKFFG- 200 Query: 184 FISASYDKDNLLISSDPEI-FGKVIDIWTFVRNIPPSNPNWVLISTKL 230 I DP + +IW + WVL + Sbjct: 201 -----------FIKEDPTASPAQFAEIWNLSKP-AAGQGGWVLAGIQQ 236 >gi|300705184|ref|YP_003746787.1| hypothetical protein RCFBP_21025 [Ralstonia solanacearum CFBP2957] gi|299072848|emb|CBJ44204.1| conserved membrane protein of unknown function [Ralstonia solanacearum CFBP2957] Length = 348 Score = 52.6 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 72/245 (29%), Gaps = 43/245 (17%) Query: 13 ILLFAFITFFVFLQLRGVLGKKT-------------GNEKPFSGFFSGKYVFSKRDERGI 59 ++L A + F V +R + G + G+ +P+ + Sbjct: 118 LILIAIVAFVVMWIIRKLRGTRAQGPAYATGGPSLGGDREPYVPSPAAPAAQPAAPVAAS 177 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVY-------------TDFDPKDFLNE 106 + G L + + L + DFD + FL Sbjct: 178 TSTGSAGNASGLGAGAQTAAQAWSLGGPAAPVADAPAAAPVAQQPWGVPADFDTQAFLRN 237 Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN 166 A+ + + ++ ++ I + ++ + L+ R + + +V + + +++ Sbjct: 238 AKVYFIRLQAAWDTANLNDIREFTTPEMFAEIKMDLADRGTAPNK--TDVVSV-EAELLG 294 Query: 167 ASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI-FGKVIDIWTFVRNIPPSNPNWVL 225 ++R G +I D ++W + S WVL Sbjct: 295 IETHPTEYLASVRFSG------------MIREDANAPAQPFAEVWNLTKPTQGSG-GWVL 341 Query: 226 ISTKL 230 + Sbjct: 342 AGIQQ 346 >gi|193211982|ref|YP_001997935.1| hypothetical protein Cpar_0309 [Chlorobaculum parvum NCIB 8327] gi|193085459|gb|ACF10735.1| hypothetical protein Cpar_0309 [Chlorobaculum parvum NCIB 8327] Length = 490 Score = 52.6 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 57/169 (33%), Gaps = 20/169 (11%) Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRD--IVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + K +KK N ++ E P T ++ FD FL + R ++ + ++ Sbjct: 91 VVAKFRKKSNENAFGEPVPEATPDARIDNTPLFPGAPPGFDQSAFLAKVRKAFLEVQRAW 150 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN------ 172 + + + VYQ FN + ++ S + I + + Sbjct: 151 SAQSTDMMRRFISDGVYQRFNTQFKMMRLLQQGNPLSNINISMAWVDRIEQDGRYDIVHA 210 Query: 173 --TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 +T R + + D++ + ++ W+F+R + Sbjct: 211 GIKASMTDRFICAL-NHDLDEEG---------TNEFVEYWSFIRKRGAA 249 Score = 39.9 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 64/162 (39%), Gaps = 13/162 (8%) Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 L + ++D+ + L+ + ++V+VY DF + ++A N++ ++ + Sbjct: 291 VLAEITQQDDYRRDGDRAEKMPGLDAKVAEMVTVYGDFSVQLVEDKASNAWMQMMTAKAM 350 Query: 121 GKVHAIEKLVDSRVYQDFNDSLST-RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 + + V +++ R+ + + ++ + +I A + +T Sbjct: 351 HNPAIMRRFVADDLFRQLAPKYEQNREIFNR------IFLNRVTLIKAEQRDGKNILTFA 404 Query: 180 IVG--QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 + Q S + + L+ DPEI + +I T R+ Sbjct: 405 LTASIQRASLTGNSVRLI---DPEIVER-EEIMTLTRDATAG 442 >gi|114676397|ref|XP_512553.2| PREDICTED: 39S ribosomal protein L45, mitochondrial [Pan troglodytes] Length = 306 Score = 52.6 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 67/205 (32%), Gaps = 18/205 (8%) Query: 33 KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVM---- 88 +K G P ++ +G + + S L R+ K M Sbjct: 61 RKAGLVIPPEKSNRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQV 120 Query: 89 --RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 R I +F KDF +A++ + + LV + D + Sbjct: 121 SIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK--- 177 Query: 147 SNEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSD 199 K V+ S V + ++ + + N IT+R+ + A YD+ L+ Sbjct: 178 --YKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQ 235 Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWV 224 ++ V++ F + + +W Sbjct: 236 EDVPKDVLEYVVFEKQLTNPYGSWR 260 >gi|313496366|gb|ADR57732.1| Import inner membrane translocase [Pseudomonas putida BIRD-1] Length = 284 Score = 52.6 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 69/222 (31%), Gaps = 34/222 (15%) Query: 11 FLILLFAFIT--FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 F I+ F + F+ + F + + + ++ Sbjct: 93 FQIMDFLIVALIAFLVFR-----------------FIAARRRQQQPQMAMPGHAPMQREA 135 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 + +F +++ F+ + FL ARN ++++ + ++ I + Sbjct: 136 HAQPAQPSIFGGSAAPAATAAPVINAPAWFNEQSFLAAARNHFQSLQQHWDANEMDKISE 195 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 V ++ + R +S+ + ++++ + T+ G ++ Sbjct: 196 FVTPQMLEFLKR---ERAELGDGFQSTYIDNLEVQLDGVDDRADRTDATLTFRGVSKNSR 252 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +D + S W VR + P W++ + Sbjct: 253 FD-QGEVFSES----------WHMVRAQGENQP-WLVAGIRQ 282 >gi|221102145|ref|XP_002170372.1| PREDICTED: similar to mitochondrial ribosomal protein L45, partial [Hydra magnipapillata] Length = 98 Score = 52.6 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 5/74 (6%) Query: 159 IDDMKIINASI-----EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213 ++ ++INA++ + +T+R+ + I D+ N +++ DP+ VID F Sbjct: 20 VEKPRVINAALSAVSENDLYAQVTVRLHTEQILTIRDRFNRIVTGDPKTPRSVIDYVVFE 79 Query: 214 RNIPPSNPNWVLIS 227 R++P W + Sbjct: 80 RHLPDPYGKWRICG 93 >gi|194374347|dbj|BAG57069.1| unnamed protein product [Homo sapiens] Length = 329 Score = 52.6 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 12/144 (8%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I +F KDF +A++ + + LV + D + Sbjct: 145 IRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK---- 200 Query: 148 NEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSDP 200 K V+ S V + ++ + + N IT+R+ + A YD+ L+ Sbjct: 201 -YKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQE 259 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWV 224 ++ V++ F + + +W Sbjct: 260 DVPKDVLEYVVFEKQLTNPYGSWR 283 >gi|34304322|ref|NP_115727.3| 39S ribosomal protein L45, mitochondrial precursor [Homo sapiens] Length = 306 Score = 52.6 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 12/144 (8%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I +F KDF +A++ + + LV + D + Sbjct: 122 IRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK---- 177 Query: 148 NEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSDP 200 K V+ S V + ++ + + N IT+R+ + A YD+ L+ Sbjct: 178 -YKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQE 236 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWV 224 ++ V++ F + + +W Sbjct: 237 DVPKDVLEYVVFEKQLTNPYGSWR 260 >gi|29611869|sp|Q9BRJ2|RM45_HUMAN RecName: Full=39S ribosomal protein L45, mitochondrial; Short=L45mt; Short=MRP-L45; Flags: Precursor gi|120660040|gb|AAI30383.1| Mitochondrial ribosomal protein L45 [Homo sapiens] gi|120660352|gb|AAI30385.1| Mitochondrial ribosomal protein L45 [Homo sapiens] gi|313883266|gb|ADR83119.1| mitochondrial ribosomal protein L45 [synthetic construct] Length = 306 Score = 52.6 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 12/144 (8%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I +F KDF +A++ + + LV + D + Sbjct: 122 IRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK---- 177 Query: 148 NEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSDP 200 K V+ S V + ++ + + N IT+R+ + A YD+ L+ Sbjct: 178 -YKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQE 236 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWV 224 ++ V++ F + + +W Sbjct: 237 DVPKDVLEYVVFEKQLTNPYGSWR 260 >gi|303246498|ref|ZP_07332777.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ] gi|302492208|gb|EFL52083.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ] Length = 267 Score = 52.2 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 60/197 (30%), Gaps = 26/197 (13%) Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93 ++G +P+ G KRD + D++ T + Sbjct: 96 RSGPTEPYDGTPPPAPPRPKRDMYTN-------AQATWDALRSTPSSKTASQSAGQPSAG 148 Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153 D ++FL A+ +Y I+ + + + + ++ Sbjct: 149 ATPD---EEFLAGAKMAYGRILADIAKRDFDDLAGFTTPDFLANLKN----------SLP 195 Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213 S D+ ++ A++ E+ G D L+ D D W FV Sbjct: 196 LSPPPAPDVLLVEATLAEHREQ------GSQTVMVVDYKVLIHEKDAPHNTDRFDRWRFV 249 Query: 214 RNIPPSNPNWVLISTKL 230 R+ NW+L + + Sbjct: 250 RDNATPGANWLLDAMEQ 266 >gi|241766060|ref|ZP_04763976.1| import inner membrane translocase subunit Tim44 [Acidovorax delafieldii 2AN] gi|241363941|gb|EER59229.1| import inner membrane translocase subunit Tim44 [Acidovorax delafieldii 2AN] Length = 235 Score = 52.2 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 13/187 (6%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 47 GKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMR--DIVSVYTDFDPKDFL 104 + + + D+ + G + + + FD + FL Sbjct: 59 PRQYSPDKVGNDASARPWERSSMAFDAARQPQGSGVVIGSGLAGSQNWGIPAGFDAEGFL 118 Query: 105 NEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS-NEKNVKSSLVGIDDMK 163 + A+ ++ + ++ + + ++ + + L+ R+S + V + + + Sbjct: 119 SAAKRNFVTLQAAWDRSDIATLRSMMTDSMLDEIRTQLTERESHRGDQPNHTDVVMIEAQ 178 Query: 164 IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223 ++ ++ ++ ++ ++W + W Sbjct: 179 LLGIEELDDGYMASVEFS-----------GMIREELSAGPSPFREVWNMTKP-KTGTSGW 226 Query: 224 VLISTKL 230 ++ + Sbjct: 227 LVAGVQA 233 >gi|26992029|ref|NP_747454.1| hypothetical protein PP_5353 [Pseudomonas putida KT2440] gi|24987165|gb|AAN70918.1|AE016736_1 conserved hypothetical protein [Pseudomonas putida KT2440] Length = 284 Score = 52.2 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 69/222 (31%), Gaps = 34/222 (15%) Query: 11 FLILLFAFIT--FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 F I+ F + F+ + F + + + ++ Sbjct: 93 FQIMDFLIVALIAFLVFR-----------------FIAARRRQQQPQMAMPGHAPMQREA 135 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 + +F +++ F+ + FL ARN ++++ + ++ I + Sbjct: 136 HAQPAQPSIFGGSAAPAATAAPVINAPAWFNEQSFLAAARNHFQSLQQHWDANEMDKISE 195 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 V ++ + R +S+ + ++++ + T+ G ++ Sbjct: 196 FVTPQMLEFLKR---ERAELGDGFQSTYIDNLEVQLDGVDDRADRTDATLTFRGVSKNSR 252 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +D + S W VR + P W++ + Sbjct: 253 FD-QGEVFSES----------WHMVRAQGENQP-WLVAGIRQ 282 >gi|119897609|ref|YP_932822.1| hypothetical protein azo1318 [Azoarcus sp. BH72] gi|119670022|emb|CAL93935.1| conserved hypothetical membrane protein [Azoarcus sp. BH72] Length = 304 Score = 52.2 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 53/136 (38%), Gaps = 15/136 (11%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 DFD + F+ +A+ ++ + S G + + + ++ + ++ R ++ + + Sbjct: 184 DFDVQGFVRQAKVNFIRLQASHDAGNLDDLREFTTPEMFAELKTNILAR---GQSAQQTD 240 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 V D +++ E + +++ G D+D ++ ++W V+ Sbjct: 241 VLEIDAEVVEVVEEGSRYIVSVLFRGLLR---EDRDAAP--------EQIHEVWHLVKP- 288 Query: 217 PPSNPNWVLISTKLGE 232 + W L + + Sbjct: 289 RDGSAGWKLAGIQQAQ 304 >gi|218530483|ref|YP_002421299.1| import inner membrane translocase subunit Tim44 [Methylobacterium chloromethanicum CM4] gi|218522786|gb|ACK83371.1| import inner membrane translocase subunit Tim44 [Methylobacterium chloromethanicum CM4] Length = 319 Score = 52.2 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 11/128 (8%) Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164 ++E I ++ V A+ +L + F + L + + S V + + Sbjct: 197 QAFERSLQEIQSAYGREDVAALRRLATPEMVSYFEEDLRANAARGVVNRISDVKLLQGDL 256 Query: 165 INASIEENTVYITIRIVGQFISASYDKDNLL-ISSDPEIFGKVIDIWTFVRNIPPSNPNW 223 A E + T+ + +++ + + + P + + WTFVR W Sbjct: 257 SEAWREGPAEFATVAMRFSLRDEVFERASNRHVENGP---QEAKEFWTFVREPGGP---W 310 Query: 224 VLISTKLG 231 +L + + G Sbjct: 311 LLSAIQQG 318 >gi|296446386|ref|ZP_06888331.1| import inner membrane translocase subunit Tim44 [Methylosinus trichosporium OB3b] gi|296256159|gb|EFH03241.1| import inner membrane translocase subunit Tim44 [Methylosinus trichosporium OB3b] Length = 325 Score = 51.8 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 42/127 (33%), Gaps = 8/127 (6%) Query: 110 SYEAIV----DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165 ++E ++ +++ V ++ L + F + L + + S V + + Sbjct: 199 AFERLLGETQEAYSREDVARLDALTTPEMASYFAEDLKSNAREGVVNRISGVKLLQGDLA 258 Query: 166 NASIEENTVYITI--RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223 A E Y T+ R ++ D + ++WTF R W Sbjct: 259 EAWREGGDEYATVAMRF-SLVDQFVERATGRVVRGDA-TPTQSTEVWTFRRPAGRGPEAW 316 Query: 224 VLISTKL 230 L + + Sbjct: 317 RLSAIQQ 323 >gi|39943280|ref|XP_361177.1| hypothetical protein MGG_03720 [Magnaporthe oryzae 70-15] gi|145009682|gb|EDJ94338.1| hypothetical protein MGG_03720 [Magnaporthe oryzae 70-15] Length = 302 Score = 51.8 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 50/139 (35%), Gaps = 23/139 (16%) Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV--------- 157 A+ + ++ ++F G + + ++ +YQ + + R + L+ Sbjct: 142 AKELHRSLSEAFAAGDLDTLRRVCMPNLYQTLSAKVLQR-PAGIRRQWELITYTGTLMYP 200 Query: 158 GIDDMKIINASIEENT------VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWT 211 I D K++ + T +TIR + +DK I+ P+ V + Sbjct: 201 RIADHKLMEIPRRDGTRATAHQAVVTIR--SRQRLTQFDKTGE-ITGQPKEL-DVTEHLI 256 Query: 212 FVRNIPPSNPN---WVLIS 227 +R + + P W + Sbjct: 257 MLRELDSNAPTPGDWKVFG 275 >gi|66359344|ref|XP_626850.1| possible mitochondrial import inner membrane, translocase subunit TIM44 [Cryptosporidium parvum Iowa II] gi|46228138|gb|EAK89037.1| possible mitochondrial import inner membrane, translocase subunit TIM44 [Cryptosporidium parvum Iowa II] Length = 424 Score = 51.8 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 56/142 (39%), Gaps = 21/142 (14%) Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA-----IVDSFFEGKVHAIEKLVDSRVY 135 G +++KV++++ ++ +F DF+ + +E ++S+ + H + Y Sbjct: 251 GNKISKVVKEMKAINPNFKLTDFM----SFFEEYILPKFMESYLKCDEHKLRLHCGDVAY 306 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE------------NTVYITIRIVGQ 183 + ++ K + + ++ + ++++I A I + N Q Sbjct: 307 RQLCSNIEKLKKMGLCLNTKILQLGNVELIGAEISDLMFSFKDCKIQTNQPEFMFTFKTQ 366 Query: 184 FISASYDKDNLLISSDPEIFGK 205 I+ D + +IS + + Sbjct: 367 QINCLQDSNGRIISGSIDDIKE 388 >gi|294953191|ref|XP_002787640.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239902664|gb|EER19436.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 794 Score = 51.8 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 47/133 (35%), Gaps = 12/133 (9%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T + + +R++ V +F + + I+ + EG V +E + N Sbjct: 644 TEIAQSIREMKEVDPNFRLSQMAEDIEHVVAPRIIRWYLEGDVERLEAHCGEAAFAAVNA 703 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR-------IVGQFISASYDKDN 193 S+ R + + + ++++ ++ ++ + Q I+ ++ Sbjct: 704 SVKARHTQKLTLDTNILQPP----MDVELKGAKTASEVDSPCFIFTFSTQQINCLRNEFG 759 Query: 194 LLISSDPEIFGKV 206 ++ + +V Sbjct: 760 EVVEGAVDDIRRV 772 >gi|163851677|ref|YP_001639720.1| import inner membrane translocase subunit Tim44 [Methylobacterium extorquens PA1] gi|163663282|gb|ABY30649.1| import inner membrane translocase subunit Tim44 [Methylobacterium extorquens PA1] Length = 319 Score = 51.8 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 11/128 (8%) Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164 ++E I ++ V A+ +L + F + L + + S V + + Sbjct: 197 QAFERSLQEIQSAYGREDVAALRRLATPEMVSYFEEDLRANAARGVVNRISDVKLLQGDL 256 Query: 165 INASIEENTVYITIRIVGQFISASYDKDNLL-ISSDPEIFGKVIDIWTFVRNIPPSNPNW 223 A E + T+ + +++ + + + P + + WTFVR W Sbjct: 257 SEAWREGPAEFATVAMRFSLRDEVFERASNRHVENGP---QEAKEFWTFVREPGGP---W 310 Query: 224 VLISTKLG 231 +L + + G Sbjct: 311 LLSAIQQG 318 >gi|12847837|dbj|BAB27727.1| unnamed protein product [Mus musculus] Length = 284 Score = 51.8 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 53/148 (35%), Gaps = 12/148 (8%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 +R I +F KDF +A++ + + LV + D Sbjct: 126 AIRKIREFEANFKTKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMV-----WD 180 Query: 147 SNEKNVKSSLV-GIDDMKIINASIEENT------VYITIRIVGQFISASYDKDNLLISSD 199 K V+ V ++ ++++ +T+R+ + A YD+ L+ Sbjct: 181 LKYKTVRWGFVESLEPAQVVHVRCSGLVNQSNMYGQVTVRLHTRQTLAIYDRFGRLMYGQ 240 Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 ++ V++ F R++ +W + + Sbjct: 241 EDVPKDVLEYVVFERHLMNPYGSWRMHA 268 >gi|207742308|ref|YP_002258700.1| hypothetical protein RSIPO_00492 [Ralstonia solanacearum IPO1609] gi|206593696|emb|CAQ60623.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609] Length = 351 Score = 51.4 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 29/250 (11%), Positives = 69/250 (27%), Gaps = 53/250 (21%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 ++L A + F V +R + G + P ++ D + Sbjct: 121 LILIAIVAFVVMWIIRKLRGTR-----PQEPAYATGGPSLGGDREPYVPSPAAPAAQPAA 175 Query: 73 SINELFPIGTRLNK-VMRDIVSVY------------------------------TDFDPK 101 + G+ N + DFD + Sbjct: 176 PVAASTGTGSAGNASGLGAGAQTAAQAWSLGGPAAPVADAPAAAQVAQQPWGVPADFDTQ 235 Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDD 161 FL A+ + + ++ ++ I + ++ + L+ R + + +V + + Sbjct: 236 AFLRNAKVYFIRLQAAWDTANLNDIREFTTPEMFAEIKMDLADRGTAPNK--TDVVSV-E 292 Query: 162 MKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI-FGKVIDIWTFVRNIPPSN 220 +++ ++R G +I D ++W + S Sbjct: 293 AELLGIETHPTEYLASVRFSG------------MIREDANAPAQPFAEVWNLTKPTQGSG 340 Query: 221 PNWVLISTKL 230 WVL + Sbjct: 341 -GWVLAGIQQ 349 >gi|83746614|ref|ZP_00943664.1| Hypothetical protein RRSL_03792 [Ralstonia solanacearum UW551] gi|83726748|gb|EAP73876.1| Hypothetical protein RRSL_03792 [Ralstonia solanacearum UW551] Length = 348 Score = 51.4 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 29/250 (11%), Positives = 69/250 (27%), Gaps = 53/250 (21%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 ++L A + F V +R + G + P ++ D + Sbjct: 118 LILIAIVAFVVMWIIRKLRGTR-----PQEPAYATGGPSLGGDREPYVPSPAAPAAQPAA 172 Query: 73 SINELFPIGTRLNK-VMRDIVSVY------------------------------TDFDPK 101 + G+ N + DFD + Sbjct: 173 PVAASTGTGSAGNASGLGAGAQTAAQAWSLGGPAAPVADAPAAAQVAQQPWGVPADFDTQ 232 Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDD 161 FL A+ + + ++ ++ I + ++ + L+ R + + +V + + Sbjct: 233 AFLRNAKVYFIRLQAAWDTANLNDIREFTTPEMFAEIKMDLADRGTAPNK--TDVVSV-E 289 Query: 162 MKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI-FGKVIDIWTFVRNIPPSN 220 +++ ++R G +I D ++W + S Sbjct: 290 AELLGIETHPTEYLASVRFSG------------MIREDANAPAQPFAEVWNLTKPTQGSG 337 Query: 221 PNWVLISTKL 230 WVL + Sbjct: 338 -GWVLAGIQQ 346 >gi|319795430|ref|YP_004157070.1| import inner membrane translocase subunit tim44 [Variovorax paradoxus EPS] gi|315597893|gb|ADU38959.1| import inner membrane translocase subunit Tim44 [Variovorax paradoxus EPS] Length = 341 Score = 51.4 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 25/247 (10%), Positives = 71/247 (28%), Gaps = 39/247 (15%) Query: 10 DFLILLFAFITFFVFLQLRGVL-----GKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK 64 +L+FA + + + R G+ + S ++ + Sbjct: 106 LIGLLIFAALAVWRIFKARSAASNGTNGQGGFAFQGAGASPSNASAPAQYSPNNVGNDAS 165 Query: 65 GKKKDNLDSINELFPIGTR-------------------LNKVMRDIVSVYTDFDPKDFLN 105 + + + + P + T FD FL Sbjct: 166 ARPWERSATAFDATPADGDRHGSSLSAAGAAAGGSMIGSALGGSQSWGIPTGFDVDGFLG 225 Query: 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN--EKNVKSSLVGIDDMK 163 A+ ++ + D++ V + ++ + ++ L+ R S+ + K+ +V + D K Sbjct: 226 AAKRNFVTLQDAWDRADVSMLRSMMTDEMVEEIRTQLADRASHTGGASNKTEVVML-DAK 284 Query: 164 IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223 ++ + ++ ++ G ++W + W Sbjct: 285 LLGIEELPDAYMASVEFS-----------GMIREDASAGPGPFREVWNMTKP-TSGGGGW 332 Query: 224 VLISTKL 230 ++ + Sbjct: 333 LVAGVQA 339 >gi|255074829|ref|XP_002501089.1| predicted protein [Micromonas sp. RCC299] gi|226516352|gb|ACO62347.1| predicted protein [Micromonas sp. RCC299] Length = 1195 Score = 51.4 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 42/111 (37%), Gaps = 11/111 (9%) Query: 42 SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFP----IGTRLNKVMRDI------ 91 +G K + + + + + + + P I + + + +R Sbjct: 940 AGPSEKKGDDAAGEGDDVKVDAHPAEPEAKSEVTVMRPSMWIIPSLMYRALRARLDMWWV 999 Query: 92 -VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 V V FD ++FL A ++E ++ +F + A+ ++ R F D+ Sbjct: 1000 RVMVDPHFDEREFLTGAIGAHEVVLKNFAANDMRALGAMLTDRALAAFRDA 1050 >gi|167835465|ref|ZP_02462348.1| hypothetical protein Bpse38_03171 [Burkholderia thailandensis MSMB43] Length = 134 Score = 51.4 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 47/134 (35%), Gaps = 17/134 (12%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD + FL A+ + + ++ EG + I + ++ + L R + ++ + Sbjct: 14 GFDTEAFLRNAKVYFVRLQAAWDEGNLADIREFTTPEMFAEVKIDLDGRGAGAN--QTDV 71 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 V + D +++ + + ++R G + ++W + Sbjct: 72 VQL-DAELLAVEDRGDEHFASVRFHG----LIRETQGAAAE-------PFNEVWNLSK-- 117 Query: 217 PPSNPNWVLISTKL 230 + W+L + Sbjct: 118 -AGSQGWLLAGIQQ 130 >gi|294899174|ref|XP_002776521.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239883553|gb|EER08337.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 604 Score = 51.4 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 47/133 (35%), Gaps = 12/133 (9%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T + + +R++ V +F + + I+ + EG V +E + N Sbjct: 454 TEIAQSIREMKEVDPNFRLSQMAEDIEHVVAPRIIRWYLEGDVERLEAHCGEAAFAAVNA 513 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR-------IVGQFISASYDKDN 193 S+ R + + + ++++ ++ ++ + Q I+ ++ Sbjct: 514 SVKARHTQKLTLDTNILQPP----MDVELKGAKTASEVDSPCFIFTFSTQQINCLRNEFG 569 Query: 194 LLISSDPEIFGKV 206 ++ + +V Sbjct: 570 EVVEGAVDDIRRV 582 >gi|46205477|ref|ZP_00048494.2| hypothetical protein Magn03001526 [Magnetospirillum magnetotacticum MS-1] Length = 147 Score = 51.4 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 47/128 (36%), Gaps = 11/128 (8%) Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164 ++E I ++ V ++ +L + F + L + + S V + + Sbjct: 25 QAFERSLTEIQGAYGREDVASLRRLATPEMVGYFEEELRANAARGVVNRISDVKLLQGDL 84 Query: 165 INASIEENTVYITIRIVGQFISASYDKDNLL-ISSDPEIFGKVIDIWTFVRNIPPSNPNW 223 A E + T+ + +++ + + + P + + WTFVR W Sbjct: 85 SEAWREGPVEFATVAMRFSLRDEVFERASNRHVENGP---QEAKEFWTFVREPGGP---W 138 Query: 224 VLISTKLG 231 +L + + G Sbjct: 139 LLSAIQQG 146 >gi|240138844|ref|YP_002963319.1| hypothetical protein MexAM1_META1p2250 [Methylobacterium extorquens AM1] gi|240008816|gb|ACS40042.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 324 Score = 51.4 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 61/225 (27%), Gaps = 27/225 (12%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFS-GKYVFSKRDERGIITLGKGKK 67 ++ F + F + ++ + +G + + G Sbjct: 124 FQIGLIAFLVMMAVRFFR------RRQEGQPAMAGNAPHARSGLPPQGGMNSGVNPMGGG 177 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 + D + I ++ V A+ Sbjct: 178 LGAGGLGGARPQPVQPVQVQPDDFQAFERSLQE-------------IQSAYGREDVAALR 224 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 +L + F + L + + S V + + A E + T+ + Sbjct: 225 RLATPEMVSYFEEDLRANAARGVVNRISDVKLLQGDLSEAWREGPAEFATVAMRFSLRDE 284 Query: 188 SYDKDNLL-ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 +++ + + + P + + WTFVR W+L + + G Sbjct: 285 VFERASNRHVENGP---QEAKEFWTFVREPGGP---WLLSAIQQG 323 >gi|148550461|ref|YP_001270563.1| import inner membrane translocase subunit Tim44 [Pseudomonas putida F1] gi|148514519|gb|ABQ81379.1| import inner membrane translocase, subunit Tim44 [Pseudomonas putida F1] Length = 297 Score = 51.4 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 69/222 (31%), Gaps = 34/222 (15%) Query: 11 FLILLFAFIT--FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 F I+ F + F+ + F + + + ++ Sbjct: 106 FQIMDFLIVALIAFLVFR-----------------FIAARRRQQQPQMAMPGHAPMQREA 148 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 + +F +++ F+ + FL ARN ++++ + ++ I + Sbjct: 149 HAQPAQPSIFGGSAAPAAAAAPVINAPAWFNEQSFLAAARNHFQSLQQHWDANEMDKISE 208 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 V ++ + R +S+ + ++++ + T+ G ++ Sbjct: 209 FVTPQMLEFLKR---ERAELGDGFQSTYIDNLEVQLDGVEDRADRTDATLTFRGVSKNSR 265 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +D + S W VR + P W++ + Sbjct: 266 FD-QGEVFSES----------WHMVRAQGENQP-WLVAGIRQ 295 >gi|148690046|gb|EDL21993.1| translocase of inner mitochondrial membrane 44, isoform CRA_b [Mus musculus] Length = 222 Score = 51.4 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 59/174 (33%), Gaps = 33/174 (18%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + ++ D + + T +++V+ +I+ V FD FL++ + Sbjct: 67 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQCETDIIPN 126 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G++ ++ Y+ + K ++ V I Sbjct: 127 ILEAMISGELDILKDWC----YEAL--------AMGKMMEQGPVLI-------------- 160 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 + Q + + + DP+ +++ +W R+ NP W L Sbjct: 161 ----VTFQAQVVMVIKNSKGEVYDGDPDKVQRMLYVWALCRDQEELNPYAAWRL 210 >gi|47077699|dbj|BAD18730.1| unnamed protein product [Homo sapiens] Length = 306 Score = 51.4 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 12/144 (8%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I +F KDF +A++ + + LV + D + Sbjct: 122 IRRIKDYDANFKIKDFPGKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK---- 177 Query: 148 NEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSDP 200 K V+ S V + ++ + + N IT+R+ + A YD+ L+ Sbjct: 178 -YKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQE 236 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWV 224 ++ V++ F + + +W Sbjct: 237 DVPKDVLEYVVFEKQLTNPYGSWR 260 >gi|254571313|ref|XP_002492766.1| Peripheral mitochondrial membrane protein involved in mitochondrial protein import [Pichia pastoris GS115] gi|238032564|emb|CAY70587.1| Peripheral mitochondrial membrane protein involved in mitochondrial protein import [Pichia pastoris GS115] gi|328353226|emb|CCA39624.1| Mitochondrial import inner membrane translocase subunit TIM44 [Pichia pastoris CBS 7435] Length = 408 Score = 51.4 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 45/130 (34%), Gaps = 10/130 (7%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV----DSFFEGKVHAIEKLVDSRVYQD 137 T KV+R + F+ ++F + R E I+ +++ +G ++ + + Sbjct: 245 TESAKVIRMFKEIDPSFNTENFNKQLR---EFIIPEVLEAYVQGDEAVLKTWLSEAPFNV 301 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA---SYDKDNL 194 F+ K ++ I + +++A + + I + K Sbjct: 302 FHAQQKQFKEQGLFSDGRILDIRGVDVLSAKVIPGNNSPALVIGARVQEVNVYRKAKTGE 361 Query: 195 LISSDPEIFG 204 + + P+ Sbjct: 362 IAAGSPDNIN 371 >gi|124267379|ref|YP_001021383.1| hypothetical protein Mpe_A2192 [Methylibium petroleiphilum PM1] gi|124260154|gb|ABM95148.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 311 Score = 51.0 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 20/192 (10%), Positives = 57/192 (29%), Gaps = 20/192 (10%) Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF 98 +P +++ + + PI ++ ++ DF Sbjct: 138 RPALAGAGAGGHGGATQPAWPAPAEPLQRRVEPSPVAAVPPIA-----MVSTGGALPADF 192 Query: 99 DPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG 158 D F A+ + + + ++ + ++ L R + + + V Sbjct: 193 DAAGFERLAKQIFIRLQAANDTADLNDLRAFTTPELFASLRLDLQER---GETSQQTDVL 249 Query: 159 IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP 218 D ++++ + E+ +++R L+ ++W V+ Sbjct: 250 KIDAEVLDLAREDGRQVVSVRF-----------HGLVRELSDAAATDFDEVWHLVKPDDD 298 Query: 219 SNPNWVLISTKL 230 S P W + + Sbjct: 299 SRP-WAIAGIEQ 309 >gi|120612288|ref|YP_971966.1| import inner membrane translocase subunit Tim44 [Acidovorax citrulli AAC00-1] gi|120590752|gb|ABM34192.1| import inner membrane translocase, subunit Tim44 [Acidovorax citrulli AAC00-1] Length = 343 Score = 51.0 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 16/203 (7%), Positives = 58/203 (28%), Gaps = 18/203 (8%) Query: 33 KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMR--D 90 + G+ P +Y + S G + + Sbjct: 152 QGAGSASPSDAAVPRQYSPQNVGNDASARPFERSGMAFDASRTGGAGSGVVIGSGLSGSQ 211 Query: 91 IVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS-NE 149 + DFD + FL+ A+ ++ + ++ + + ++ + + L R++ Sbjct: 212 NWGIPADFDTQGFLDAAKRNFVTLQAAWDRSDIATLRSMMTDSMVDEIRAQLGEREALRG 271 Query: 150 KNV--KSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 + + +V + + +++ + ++ ++ Sbjct: 272 ASQPNHTDVVML-EAQLLGIEDLGDGYMASVEFS-----------GMIREELSAGPSPFR 319 Query: 208 DIWTFVRNIPPSNPNWVLISTKL 230 ++W + W++ + Sbjct: 320 EVWNMTKP-KSGTSGWLVAGVQA 341 >gi|325273940|ref|ZP_08140103.1| hypothetical protein G1E_12467 [Pseudomonas sp. TJI-51] gi|324100911|gb|EGB98594.1| hypothetical protein G1E_12467 [Pseudomonas sp. TJI-51] Length = 282 Score = 51.0 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 67/222 (30%), Gaps = 36/222 (16%) Query: 11 FLILLFAFIT--FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 F I+ F + F+ + F + + + Sbjct: 93 FQIMDFLIVALIAFLVFR--------------FIAARRRQQQPQMAMPGHAPMQREAHGQ 138 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 S+ G +++ F+ + FL ARN ++++ + ++ I + Sbjct: 139 PAQPSV-----FGGSAAPAAAPVINAPAWFNEQSFLAAARNHFQSLQQHWDANEMDKIAE 193 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 V ++ + R +S+ + ++++ + T+ G ++ Sbjct: 194 FVTPQMLEFLKR---ERAELGDGFQSTYIDNLEVQLDGVDDRPDRTDATLTFRGVSKNSR 250 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D L S W VR + + P W++ + Sbjct: 251 LD-QGELFSES----------WHMVRALGENQP-WLVAGIRQ 280 >gi|52842829|ref|YP_096628.1| transmembrane protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629940|gb|AAU28681.1| transmembrane protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 270 Score = 51.0 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 76/222 (34%), Gaps = 44/222 (19%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 G L+ + FF+ LR + + F T ++ Sbjct: 88 GLITWLILGSVIFFIISFLR----------RKMNPGFQA-------------TQSGAFRQ 124 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 ++ + + + N T FD +FL +A+ ++ + ++ + + ++ Sbjct: 125 NSFEQFTQNY---GNRNSGGAHFAQQETSFDADNFLRDAKITFIRLQAAYDQKNLQDLQT 181 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 V+ + L R ++ ++ + D K+++ S + ++ +++ G + Sbjct: 182 FTVPEVFAEIKMQLDERGDAPN--QTEVISL-DAKLLDVSKQSLSMIASVQFTG-----T 233 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ + + +IW F R WV+ + Sbjct: 234 IKENGEI--------SNLDEIWHF-RQFDNRK-EWVVGGIQQ 265 >gi|328872019|gb|EGG20389.1| hypothetical protein DFA_07513 [Dictyostelium fasciculatum] Length = 310 Score = 50.6 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 71/215 (33%), Gaps = 15/215 (6%) Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87 V+ +K G + + + + +T +D+I + + + Sbjct: 91 YTVMRQKVGRTMKPNIYIQSPGQIFEPNLPVPLTKILVTPSSWIDTIRFYYRTYGSIGVI 150 Query: 88 MRDIVSVYTD-FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN-----DS 141 + ++ D F K F+ +A+ + + + +++L Y D Sbjct: 151 KSKLKALTQDQFAVKSFVEQAKEIFINLNKAIANSDTDEVKELATIHYYSILAKNTQFDK 210 Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--------YITIRIVGQFISASYDKDN 193 + +K+N K+ + + M I A T I + G+ D Sbjct: 211 VDGKKNNVKSEWTCELDKPKMLWIRAGQIRTTAAGGMEYFGQICVEFSGKQSLTRTDTKK 270 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 +I S + + D++ F R + +W + T Sbjct: 271 NIIISQVKDA-EFKDVYVFERCLSSLPSSWRVCQT 304 >gi|299131769|ref|ZP_07024964.1| import inner membrane translocase subunit Tim44 [Afipia sp. 1NLS2] gi|298591906|gb|EFI52106.1| import inner membrane translocase subunit Tim44 [Afipia sp. 1NLS2] Length = 315 Score = 50.6 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 47/118 (39%), Gaps = 5/118 (4%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + +++ ++ + + + + L++ S K + V + + A E +T Sbjct: 200 VQEAWSNEDMNRLHAIATPEMVSYMSQDLASNSSRGVINKVTNVKLLQGDLAEAWREGST 259 Query: 174 VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 Y T+ + + + ++ +I + +V +IWTFVR W L + + Sbjct: 260 DYATVAMHFSLVDKTMERSSGRMIEGS-DTPQEVTEIWTFVRRPGAD---WELSAIQQ 313 >gi|193848536|gb|ACF22724.1| mitochondrial inner membrane protein [Brachypodium distachyon] Length = 226 Score = 50.6 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 41/107 (38%), Gaps = 4/107 (3%) Query: 96 TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155 F DF+ + + + ++ ++ +G ++K + + S+ ++ Sbjct: 111 RTFSLPDFVADIEEAIKPVLIAYSKGDTEMLKKYCNKEFIERCEGERQAYASHNLFFRNK 170 Query: 156 LVGIDDMKIINASIEENTVYITI----RIVGQFISASYDKDNLLISS 198 ++ I + +I A + +T I + Q I +++D + Sbjct: 171 VLHISEPHVIEAKMLGSTPLIILGVNAPFQTQQIHCVHNRDGQITHG 217 >gi|145498986|ref|XP_001435479.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124402612|emb|CAK68082.1| unnamed protein product [Paramecium tetraurelia] Length = 405 Score = 50.6 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 54/127 (42%), Gaps = 5/127 (3%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 + + + ++ + + DFD + EA+ +E I + + G + +++K+ F Sbjct: 240 SDVARAIKQMRMIDPDFDLYELEKEAKVIFEQIYNLYLLGDLESLQKVCGEAALGYFKVL 299 Query: 142 LSTRKSNE-KNVKSSLVGIDDMKIINASIEENTVY----ITIRIVGQFISASYDKDNLLI 196 L +++ + + L +D+++ ASI ++ TI+ F S + +I Sbjct: 300 LKKQEAEKSEPKHKQLWNVDEIRFTRASIPDSVKLPVFIFTIKTQEIFCYVSKSDRSKII 359 Query: 197 SSDPEIF 203 D E Sbjct: 360 DGDDERI 366 >gi|257095873|ref|YP_003169514.1| import inner membrane translocase subunit Tim44 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048397|gb|ACV37585.1| import inner membrane translocase subunit Tim44 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 303 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 53/174 (30%), Gaps = 19/174 (10%) Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRD----IVSVYTDFDPKDFLNEARNSYEAIVD 116 D + L G ++ I +V DFD FL A+ ++ + Sbjct: 141 PGMAPPPFDPRPASAGLAAHGDDSPAALQPSGAPIANVPADFDSDGFLRIAKLNFIRLQA 200 Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 + G + I + V ++ + R ++ +V ++ +++ E Sbjct: 201 ANDAGNLDDIREFVSPELFAEIRMQFEERAKA--PQQTDVVTLN-AQLLEVVTEVTRHIA 257 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R ++ ++W + + WV+ + Sbjct: 258 SVRFS-----------GMIREEAGAAAAPFDEVWNLSKPVE-GGKGWVVAGIQQ 299 >gi|301762886|ref|XP_002916855.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like [Ailuropoda melanoleuca] Length = 324 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 12/144 (8%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I +F KDF +A++ + + + LV + D ++ Sbjct: 145 IRKIREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHNRLHTLVTENCFPDMVWDIT---- 200 Query: 148 NEKNVKSSLV-GIDDMKIINAS-----IEENT-VYITIRIVGQFISASYDKDNLLISSDP 200 K V+ S + ++ +++ + N +T+R+ + A YD+ L+ Sbjct: 201 -YKTVRWSFIESLEPPQVVQVRCSSMLSQGNIYGQVTVRMHTRQTLAIYDRFGRLMYGQE 259 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWV 224 ++ V++ F +++ +W Sbjct: 260 DVPKDVLEYVVFEKHLVNPYGSWR 283 >gi|281344359|gb|EFB19943.1| hypothetical protein PANDA_004986 [Ailuropoda melanoleuca] Length = 276 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 12/144 (8%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I +F KDF +A++ + + + LV + D ++ Sbjct: 101 IRKIREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHNRLHTLVTENCFPDMVWDIT---- 156 Query: 148 NEKNVKSSLV-GIDDMKIINAS-----IEENT-VYITIRIVGQFISASYDKDNLLISSDP 200 K V+ S + ++ +++ + N +T+R+ + A YD+ L+ Sbjct: 157 -YKTVRWSFIESLEPPQVVQVRCSSMLSQGNIYGQVTVRMHTRQTLAIYDRFGRLMYGQE 215 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWV 224 ++ V++ F +++ +W Sbjct: 216 DVPKDVLEYVVFEKHLVNPYGSWR 239 >gi|207727902|ref|YP_002256296.1| hypothetical protein RSMK04298 [Ralstonia solanacearum MolK2] gi|206591144|emb|CAQ56756.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] Length = 351 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 29/250 (11%), Positives = 69/250 (27%), Gaps = 53/250 (21%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 ++L A + F V +R + G + P ++ D + Sbjct: 121 LILIAIVAFVVMWVIRKLRGTR-----PQEPAYATGGPSLGGDREPYVPSPAAPAAQPAA 175 Query: 73 SINELFPIGTRLNK-VMRDIVSVY------------------------------TDFDPK 101 + G+ N + DFD + Sbjct: 176 PVAASTGTGSAGNASGLGAGAQTAAQAWSLGGPAAPVADAPAAAPVAQQPWGVPADFDTQ 235 Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDD 161 FL A+ + + ++ ++ I + ++ + L+ R + + +V + + Sbjct: 236 AFLRNAKVYFIRLQAAWDTANLNDIREFTTPEMFAEIKMDLADRGTAPNK--TDVVSV-E 292 Query: 162 MKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI-FGKVIDIWTFVRNIPPSN 220 +++ ++R G +I D ++W + S Sbjct: 293 AELLGIETHPTEYLASVRFSG------------MIREDANAPAQPFAEVWNLTKPTQGSG 340 Query: 221 PNWVLISTKL 230 WVL + Sbjct: 341 -GWVLAGIQQ 349 >gi|254561446|ref|YP_003068541.1| hypothetical protein METDI3032 [Methylobacterium extorquens DM4] gi|254268724|emb|CAX24685.1| conserved hypothetical protein [Methylobacterium extorquens DM4] Length = 319 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 11/128 (8%) Query: 109 NSYE----AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164 ++E I + V A+ +L + F + L + + S V + + Sbjct: 197 QAFERSLQEIQSGYGREDVAALRRLATPEMVSYFEEDLRANAARGVVNRISDVKLLQGDL 256 Query: 165 INASIEENTVYITIRIVGQFISASYDKDNLL-ISSDPEIFGKVIDIWTFVRNIPPSNPNW 223 A E + T+ + +++ + + + P + + WTFVR W Sbjct: 257 SEAWREGPAEFATVAMRFSLRDEVFERASNRHVENGP---QEAKEFWTFVREPGGP---W 310 Query: 224 VLISTKLG 231 +L + + G Sbjct: 311 LLSAIQQG 318 >gi|126308283|ref|XP_001372116.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 310 Score = 49.9 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 54/157 (34%), Gaps = 12/157 (7%) Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 E G +R + DF K F +A+ + + LV R Sbjct: 109 TEKLKQGVASQLAIRKVREYDADFRTKTFPEKAQQIFVEAHQCLNTSDHDRLHALVTERC 168 Query: 135 YQDFNDSLSTRKSNEKNVKSSLV-GIDDMKIINAS-----IEENT-VYITIRIVGQFISA 187 + + + K V + V ++ ++++ E N +T+R+ + A Sbjct: 169 FPEMVWDI-----QLKTVHWNFVESLEPPRVVHVRCPNMVSEGNIYGQVTVRMHTRQTLA 223 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 YD+ L+ ++ V++ F R++ W Sbjct: 224 IYDRFGRLMYGQEDVPKDVLEYVVFERHLTNPYGAWR 260 >gi|316966353|gb|EFV50945.1| zinc finger protein [Trichinella spiralis] Length = 763 Score = 49.9 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 72/200 (36%), Gaps = 21/200 (10%) Query: 37 NEKPFSGFFSG---KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93 E+P SG +E + L KGK +DS ++ R ++ + I S Sbjct: 529 RERPIHISSSGTIFDEFVPDENENKVSLLVKGKGSRLVDSSKHVW----RNSRAGKKIRS 584 Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN-V 152 DFDP F++EA Y + + +LV Y + + Sbjct: 585 YDADFDPVIFIDEALKIYLDAHSALQNRDSDRLHELVTEYAYP------EMWEELNLKSL 638 Query: 153 KSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 + V + M+ + E+N +T+R+ + A YD+ L + + Sbjct: 639 RWQFVESVEPARVVQMRTSSVMQEDNIFAQVTVRMHTKQKLAIYDQFGRLYMGNETVPRD 698 Query: 206 VIDIWTFVRNIPPSNPNWVL 225 V++ + +++ W L Sbjct: 699 VLEYIVYEKHLSNLYGKWRL 718 >gi|156056531|ref|XP_001594189.1| hypothetical protein SS1G_03996 [Sclerotinia sclerotiorum 1980] gi|154701782|gb|EDO01521.1| hypothetical protein SS1G_03996 [Sclerotinia sclerotiorum 1980 UF-70] Length = 266 Score = 49.9 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 9/104 (8%) Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL--------VG 158 A Y + +F G + ++ +Y+ F +++R + V +L + Sbjct: 123 AEALYREMYQNFAAGNTGRLRRMCTDGLYESFAQRIASR-PRGQKVTWNLEKMNRRPKIM 181 Query: 159 IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI 202 + +I +RI + + D + E Sbjct: 182 SNKAVMIPGGSGNVIRQAVVRISSRQLITLKDSKGKELPGSSEK 225 >gi|195572942|ref|XP_002104454.1| GD20969 [Drosophila simulans] gi|194200381|gb|EDX13957.1| GD20969 [Drosophila simulans] Length = 335 Score = 49.9 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 51/137 (37%), Gaps = 22/137 (16%) Query: 106 EARNSYEAI------VDS----FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155 A+ +E + + + + I + V R Y + ++ K ++ Sbjct: 135 GAKQKFEFLEKKSKSLMAAHTHMAAKDKYKIREFVSERCYPEMMHNVKD-----KTIRWK 189 Query: 156 LV-GIDDMKIINASI------EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208 + ++ ++++A + E +T+R Q + A YD+ L+ I V++ Sbjct: 190 FLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLMHGSEIITKDVLE 249 Query: 209 IWTFVRNIPPSNPNWVL 225 F ++I W L Sbjct: 250 YVVFEKHISNEYGKWRL 266 >gi|315042568|ref|XP_003170660.1| mitochondrial inner membrane translocase subunit TIM44 [Arthroderma gypseum CBS 118893] gi|311344449|gb|EFR03652.1| mitochondrial inner membrane translocase subunit TIM44 [Arthroderma gypseum CBS 118893] Length = 540 Score = 49.9 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 10/135 (7%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 V++ + +F + FL E R Y ++D++ +G V ++ + + Sbjct: 376 AENETAMVIKAFRQMDPNFQIEPFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFHV 434 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASY-DKD 192 + K+ ++ I + I +A + + IT R Q + +K Sbjct: 435 YAALTKQYKTAGLKSDGRILDIRHVDISHARMLEPGDIPVFIITCR--SQEVHVYRKEKT 492 Query: 193 NLLISSDPEIFGKVI 207 L + + V Sbjct: 493 GELAAGMEDKVQLVT 507 >gi|296202660|ref|XP_002748546.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like [Callithrix jacchus] Length = 329 Score = 49.5 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 67/205 (32%), Gaps = 18/205 (8%) Query: 33 KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK------ 86 +K G P ++ +G + + S L R+ K Sbjct: 84 RKAGVVIPPERLERPIHLACSAGIFDAYVPPEGDARISFLSREGLKQKTERMKKTMASQV 143 Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 +R I F KDF +A++ + + LV + D + Sbjct: 144 AIRKIKEHDASFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKC-- 201 Query: 147 SNEKNVKSSLV-GIDDMKIINA---SIEENT---VYITIRIVGQFISASYDKDNLLISSD 199 K V+ S V ++ ++ S+ + +T+R+ + A YD+ L+ Sbjct: 202 ---KTVRWSFVESLEPSHVVQVRCSSMVNESNMYGQVTVRMHTRQTLAIYDRFGRLMYGQ 258 Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWV 224 ++ V++ F + + +W Sbjct: 259 EDVPKDVLEYVVFEKQLVNPYGSWR 283 >gi|319761670|ref|YP_004125607.1| import inner membrane translocase subunit tim44 [Alicycliphilus denitrificans BC] gi|330823541|ref|YP_004386844.1| import inner membrane translocase subunit Tim44 [Alicycliphilus denitrificans K601] gi|317116231|gb|ADU98719.1| import inner membrane translocase subunit Tim44 [Alicycliphilus denitrificans BC] gi|329308913|gb|AEB83328.1| import inner membrane translocase subunit Tim44 [Alicycliphilus denitrificans K601] Length = 332 Score = 49.5 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 20/228 (8%), Positives = 68/228 (29%), Gaps = 31/228 (13%) Query: 19 ITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINEL- 77 + + + +R ++ + + F+ + + K D+ Sbjct: 118 VMVVIGMVMRS---RRPAASQEGAAPFAFQGAGAATPAEAQAPRQYSPDKVGNDASARPW 174 Query: 78 --------FPI---GTRLNKVMR--DIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 P G+ + + V DFD FL A+ ++ + ++ + Sbjct: 175 ESTGMAYQAPATGGGSMIGSALAGSQNWGVPADFDVAGFLAAAKRNFTTLQAAWDRSDIA 234 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSN--EKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + ++ + + LS R+S+ + + V + + +++ + ++ Sbjct: 235 TLRSMMTDGMVDEIRAQLSERESHRGGEQPNHTDVVMLEAQLLGIEDLGDGYMASVEFS- 293 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ ++W + + W++ + Sbjct: 294 ----------GMIREEPSAGPSPFREVWNMTKP-KNGSVGWLVAGVQA 330 >gi|326482394|gb|EGE06404.1| mitochondrial inner membrane translocase subunit TIM44 [Trichophyton equinum CBS 127.97] Length = 543 Score = 49.5 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 10/135 (7%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 V++ + +F + FL E R Y ++D++ +G V ++ + + Sbjct: 379 AENETAMVIKAFRQMDPNFQIEPFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFHV 437 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASY-DKD 192 + K+ ++ I + I +A + + IT R Q + +K Sbjct: 438 YAALTKQYKTAGLKSDGRILDIRHVDISHARMLEPGDIPVFIITCR--SQEVHVYRKEKT 495 Query: 193 NLLISSDPEIFGKVI 207 L + + V Sbjct: 496 GELAAGMEDKVQLVT 510 >gi|167036388|ref|YP_001671619.1| import inner membrane translocase subunit Tim44 [Pseudomonas putida GB-1] gi|166862876|gb|ABZ01284.1| import inner membrane translocase subunit Tim44 [Pseudomonas putida GB-1] Length = 284 Score = 49.5 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 24/222 (10%), Positives = 70/222 (31%), Gaps = 34/222 (15%) Query: 11 FLILLFAFIT--FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 F I+ F + F+ + F + + + ++ Sbjct: 93 FQIMDFLIVALIAFLVFR-----------------FIAARRRQQQPQMAMPGHAPMQREA 135 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 + +F +++ F+ ++FL ARN ++++ + ++ I + Sbjct: 136 HAQPAQPSIFGGSAAPAAAAAPVINAPAWFNEQNFLAAARNHFQSLQQHWDANEMDKIAE 195 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 V ++ + R +++ + ++++ + T+ G ++ Sbjct: 196 FVTPQMLEFLKR---ERAELGDGFQATYIDNLEVQLDGLDDRTDRTDATLTFRGVSKNSR 252 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +D + S W VR + P W++ + Sbjct: 253 FD-QGEVFSES----------WHMVRAQGENQP-WLVAGIRQ 282 >gi|56477136|ref|YP_158725.1| hypothetical protein ebA3013 [Aromatoleum aromaticum EbN1] gi|56313179|emb|CAI07824.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 283 Score = 49.5 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 68/227 (29%), Gaps = 38/227 (16%) Query: 5 KMDSG-DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 +M S +L+FA + F +L ++ + G + Sbjct: 92 EMGSLLMIALLVFAALMLF------RMLSRR----------------NAAARSGGAMQYA 129 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 N + + T+FD + F+ +A+ + + + G + Sbjct: 130 GAPAGGNFPASAPTSFPAASSAAAPAPAGKIPTNFDAEAFVRQAKVQFIRLQAANDAGNL 189 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 I + ++ + L+ R ++ +V ++ +++ E ++IR G Sbjct: 190 EDIREFTSPEMFAEIRMQLTERGPG--TQRTDVVELN-GEVLEVVEEAQRYVVSIRFSGL 246 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + ++W + N WV+ + Sbjct: 247 LR-----------EEEGAAPAAFDEVWHLTKP-STGNVGWVVAGIQQ 281 >gi|19112697|ref|NP_595905.1| TIM23 translocase complex subunit Tim44 [Schizosaccharomyces pombe 972h-] gi|6016371|sp|O60084|TIM44_SCHPO RecName: Full=Mitochondrial import inner membrane translocase subunit tim44; Flags: Precursor gi|3006160|emb|CAA18420.1| TIM23 translocase complex subunit Tim44 [Schizosaccharomyces pombe] Length = 427 Score = 49.1 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 60/184 (32%), Gaps = 14/184 (7%) Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 ++ I D++ + T ++VMR + F+ + FL R E Sbjct: 236 QESEHPIVSSIRDMADSISGVWSRMFSETEASQVMRRFKEIDPSFNTEHFLQYLR---EY 292 Query: 114 IV----DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 IV +++ +G ++ + + + + + ++ I + I++ + Sbjct: 293 IVPEVTEAYVKGDKEVLKTWLSEAPFSVYETTTKEYAKHGVVSVGKILDIRGVDIMSQRL 352 Query: 170 E--ENTVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRNIP-PSNPN--- 222 + + Q + D L++ + + F R NP Sbjct: 353 LQPNDIPVFIVTFRTQEVHMFKDASSGELVAGKDDRIQQCTYASVFTRVEDELDNPETRG 412 Query: 223 WVLI 226 W ++ Sbjct: 413 WRIV 416 >gi|83774116|dbj|BAE64241.1| unnamed protein product [Aspergillus oryzae] Length = 518 Score = 49.1 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 58/165 (35%), Gaps = 18/165 (10%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 +V++ + +F ++FL E R Y ++D++ +G V ++ + + Sbjct: 354 AENETAQVIKKFREMDPNFQMEEFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFSV 412 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYD-KDNL 194 + + ++ + ++++NA + + + Q + + K Sbjct: 413 YAALAKQYTTAGLKSDGRILDVRGVEVMNARMLDPGDIPVFVVTCRSQEVHVYKNVKTGE 472 Query: 195 LISSDPEIFGKVIDIWTFVRNIP-----PSNPN---WVLISTKLG 231 L + + V T+ + +NP W LI + Sbjct: 473 LAAGMEDKVQLV----TYAIGLTRIPEDVNNPETRGWRLIELQKA 513 >gi|307107447|gb|EFN55690.1| expressed protein [Chlorella variabilis] Length = 353 Score = 49.1 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 62/166 (37%), Gaps = 45/166 (27%) Query: 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL-----VGID 160 A+++Y + E + ++ ++++ F D+++ K++ ++++ GI Sbjct: 190 GAKDAYYIVHKLLEEEDWETLRSMMSAKLFAAFQDTVAAYKADGLVWRTAISQDLQAGIR 249 Query: 161 DMKI-----------INASIEENTV-----------YITIRIVGQF-ISASYDKDNLLIS 197 + A++ + +T++++G+ ++ + +D +++ Sbjct: 250 GLAFATKQQMETYDPEQAALAPDDAGALARPAGMWLVLTVQLLGEQRVTITRQEDGQVVA 309 Query: 198 --------SDPEIFGKVIDIWTFVR-----NIPPS--NPNWVLIST 228 V W F R ++P + +W L+S Sbjct: 310 ELRRAGVVGGVGDRRPVR--WKFARGPLPASLPADRLDADWFLLSI 353 >gi|50551255|ref|XP_503101.1| YALI0D21142p [Yarrowia lipolytica] gi|49648969|emb|CAG81293.1| YALI0D21142p [Yarrowia lipolytica] Length = 418 Score = 48.7 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 17/156 (10%), Positives = 50/156 (32%), Gaps = 12/156 (7%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQDFN 139 T KV+R + F+ F+ R Y +++++ G ++ + Y + Sbjct: 255 TEAGKVIRMFKLMDPSFNQDQFMKTTRE-YIIPEVLEAWVTGDGETLKMWLSEAPYNIWA 313 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG----QFISASYDKDNLL 195 ++ I + I++A + + + + ++ + K L Sbjct: 314 TQTKQYTEQGLFADGKILDIRGVDIMSAKVLPPS-DVPVYVISCRAQEVHLYRKAKTGEL 372 Query: 196 ISSDPEIFGKVIDIWTFVR---NIPPSNP-NWVLIS 227 + + + + R ++ W ++ Sbjct: 373 AAGTEDNIQQSTYVMVLTRVPEDMGNPETGGWKILE 408 >gi|54298612|ref|YP_124981.1| hypothetical protein lpp2676 [Legionella pneumophila str. Paris] gi|148358642|ref|YP_001249849.1| transmembrane protein [Legionella pneumophila str. Corby] gi|296108268|ref|YP_003619969.1| transmembrane protein [Legionella pneumophila 2300/99 Alcoy] gi|53752397|emb|CAH13829.1| hypothetical protein lpp2676 [Legionella pneumophila str. Paris] gi|148280415|gb|ABQ54503.1| transmembrane protein [Legionella pneumophila str. Corby] gi|295650170|gb|ADG26017.1| transmembrane protein [Legionella pneumophila 2300/99 Alcoy] Length = 270 Score = 48.7 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 29/222 (13%), Positives = 75/222 (33%), Gaps = 44/222 (19%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 G L+ + FFV LR + + F T ++ Sbjct: 88 GLITWLILGSVIFFVVSFLR----------RKMNPGFQA-------------TQSGAFRQ 124 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 ++ + + + N T FD +FL +A+ ++ + ++ + + ++ Sbjct: 125 NSFEQFTQNY---GNRNSGGAHFAQQETSFDADNFLRDAKVTFIRLQAAYDQKNLQDLQT 181 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 V+ + L R ++ ++ + D K+++ S + + +++ G + Sbjct: 182 FTVPEVFAEIKMQLDERGDAPN--QTEVISL-DAKLLDVSKQSLSTIASVQFTG-----T 233 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ + + +IW F R WV+ + Sbjct: 234 IKENGEI--------SNLDEIWHF-RQFDNRK-EWVVGGIQQ 265 >gi|310795797|gb|EFQ31258.1| Tim44-like domain-containing protein [Glomerella graminicola M1.001] Length = 532 Score = 48.7 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 48/135 (35%), Gaps = 10/135 (7%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 +V++ ++ +F + FL E R Y ++D++ +G + ++ + Y Sbjct: 368 AENETAQVIKKFRTMDPNFQTEPFLKELRE-YILPEVLDAYVKGDIETLKLWLSEAQYSV 426 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE----NTVYITIRIVGQFISASYD-KD 192 + + ++ I + I+ A + + IT R Q + + K Sbjct: 427 YEALTKQYLTAGLKSDGKILDIRHVDIVRARMLDPGEIPVFVITCR--TQEVHVYRNAKS 484 Query: 193 NLLISSDPEIFGKVI 207 L + + V Sbjct: 485 GELAAGMEDKVQLVT 499 >gi|85117796|ref|XP_965329.1| hypothetical protein NCU03229 [Neurospora crassa OR74A] gi|28927136|gb|EAA36093.1| conserved hypothetical protein [Neurospora crassa OR74A] gi|29290073|gb|AAO72335.1| mitochondrial inner membrane translocase subunit TIM44 [Neurospora crassa] Length = 526 Score = 48.7 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 48/135 (35%), Gaps = 10/135 (7%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 +V++ + + F+ ++FL E R Y +++++ +G V ++ + Y Sbjct: 362 AENETAQVIKKLRELDPGFNMENFLMELRE-YILPEVLEAYVKGDVETLKLWLSEAQYSV 420 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASYD-KD 192 + ++ I + ++ A + + IT R Q + + K Sbjct: 421 YEALTKQYLQAGLKSDGRILDIRGVDVLKARMLEPGDIPVFVITCR--TQEVHVYKNAKT 478 Query: 193 NLLISSDPEIFGKVI 207 L + + V Sbjct: 479 GKLAAGMEDKVQLVT 493 >gi|326318355|ref|YP_004236027.1| import inner membrane translocase subunit Tim44 [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375191|gb|ADX47460.1| import inner membrane translocase subunit Tim44 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 341 Score = 48.7 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 12/137 (8%), Positives = 46/137 (33%), Gaps = 16/137 (11%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS-NEKNV--K 153 DFD + FL+ A+ ++ + ++ + + ++ + + L R+S + Sbjct: 216 DFDTQGFLDAAKRNFVTLQAAWDRSDIATLRSMMTDSMVDEIRSQLGERESLRGASQPNH 275 Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213 + +V + + +++ + ++ ++ ++W Sbjct: 276 TDVVML-EAQLLGIEDLGDGYMASVEFS-----------GMIREEPSAGPSPFREVWNMT 323 Query: 214 RNIPPSNPNWVLISTKL 230 + W++ + Sbjct: 324 KP-KSGTSGWLVAGVQA 339 >gi|116182526|ref|XP_001221112.1| hypothetical protein CHGG_01891 [Chaetomium globosum CBS 148.51] gi|88186188|gb|EAQ93656.1| hypothetical protein CHGG_01891 [Chaetomium globosum CBS 148.51] Length = 536 Score = 48.7 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 8/134 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 V++ + ++ F + FL E R Y ++D++ +G V ++ + Y Sbjct: 372 AENETAMVIKRLRAMDPAFKLEPFLQELRE-YILPEVLDAYVKGDVETLKLWLSEAQYSV 430 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193 + ++ I + I+ A + + I + IV Q + + K N Sbjct: 431 YEALTKQYLQAGLKSDGKILDIRGVDILRARMLDP-GEIPVFIVTCRTQEVHVYRNAKSN 489 Query: 194 LLISSDPEIFGKVI 207 L + + V Sbjct: 490 ELAAGMEDKVQLVT 503 >gi|317155790|ref|XP_001825374.2| TIM23 translocase complex subunit Tim44 [Aspergillus oryzae RIB40] Length = 508 Score = 48.7 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 58/165 (35%), Gaps = 18/165 (10%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 +V++ + +F ++FL E R Y ++D++ +G V ++ + + Sbjct: 344 AENETAQVIKKFREMDPNFQMEEFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFSV 402 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYD-KDNL 194 + + ++ + ++++NA + + + Q + + K Sbjct: 403 YAALAKQYTTAGLKSDGRILDVRGVEVMNARMLDPGDIPVFVVTCRSQEVHVYKNVKTGE 462 Query: 195 LISSDPEIFGKVIDIWTFVRNIP-----PSNPN---WVLISTKLG 231 L + + V T+ + +NP W LI + Sbjct: 463 LAAGMEDKVQLV----TYAIGLTRIPEDVNNPETRGWRLIELQKA 503 >gi|302665278|ref|XP_003024251.1| hypothetical protein TRV_01602 [Trichophyton verrucosum HKI 0517] gi|291188298|gb|EFE43640.1| hypothetical protein TRV_01602 [Trichophyton verrucosum HKI 0517] Length = 543 Score = 48.7 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 10/135 (7%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 V++ + +F + FL E R Y ++D++ +G V ++ + + Sbjct: 379 AENETAMVIKAFRQMDPNFQIEPFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFHV 437 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASY-DKD 192 ++ K+ ++ I + I +A + + IT R Q + +K Sbjct: 438 YSALTKQYKTAGLKSDGRILDIRHVDISHARMLEPGDIPVFIITCR--SQEVHVYRKEKT 495 Query: 193 NLLISSDPEIFGKVI 207 L + + V Sbjct: 496 GELAAGMEDRVQLVT 510 >gi|198413804|ref|XP_002125945.1| PREDICTED: similar to Mitochondrial ribosomal protein L45 [Ciona intestinalis] Length = 400 Score = 48.7 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 21/153 (13%) Query: 89 RDIVSVYTDFDPKDFLNEARNSYE-----------AIVDSFFEGKVHA-IEKLVDSRVYQ 136 R + +F K F EA++ Y IV + ++ LV Y Sbjct: 132 RIVKKRVDNFHRKRFPAEAQDIYIKAHNLLNTPNWTIV---NQEDTEERLQNLVTEHAYT 188 Query: 137 DFNDSLSTRK---SNEKNVKS-SLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 D L ++ ++++ +V I +I + +T+R + A YD+ Sbjct: 189 DMVKGLDSKTVIWKWNESLEPPRVVRIRASPMI--TNNNYYGQVTVRFHSKQTLAIYDRF 246 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 L+ P+ V++ F R+I W + Sbjct: 247 GRLMYGSPDEARNVLEFVVFERHISHPYGCWRI 279 >gi|238498640|ref|XP_002380555.1| mitochondrial inner membrane translocase subunit TIM44, putative [Aspergillus flavus NRRL3357] gi|220693829|gb|EED50174.1| mitochondrial inner membrane translocase subunit TIM44, putative [Aspergillus flavus NRRL3357] Length = 508 Score = 48.7 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 58/165 (35%), Gaps = 18/165 (10%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 +V++ + +F ++FL E R Y ++D++ +G V ++ + + Sbjct: 344 AENETAQVIKKFREMDPNFQMEEFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFSV 402 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYD-KDNL 194 + + ++ + ++++NA + + + Q + + K Sbjct: 403 YAALAKQYTTAGLKSDGRILDVRGVEVMNARMLDPGDIPVFVVTCRSQEVHVYKNVKTGE 462 Query: 195 LISSDPEIFGKVIDIWTFVRNIP-----PSNPN---WVLISTKLG 231 L + + V T+ + +NP W LI + Sbjct: 463 LAAGMEDKVQLV----TYAIGLTRIPEDVNNPETRGWRLIELQKA 503 >gi|170724288|ref|YP_001751976.1| import inner membrane translocase subunit Tim44 [Pseudomonas putida W619] gi|169762291|gb|ACA75607.1| import inner membrane translocase subunit Tim44 [Pseudomonas putida W619] Length = 284 Score = 48.7 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 23/222 (10%), Positives = 70/222 (31%), Gaps = 34/222 (15%) Query: 11 FLILLFAFIT--FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 I+ F + F+ + F + + + ++ Sbjct: 93 LQIMDFLIVALIAFLVFR-----------------FIAARRRQQQPQMAAPGHAPFQREA 135 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 + +F +++ F+ + FL AR+ ++++ + ++ I + Sbjct: 136 HGQPAQPSIFGGSAAPAAPAAPVINAPAWFNEQSFLAAARSHFQSLQQHWDANEMDKIAE 195 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 V ++ + R +++ + D+++ + T+ G ++ Sbjct: 196 FVTPQMLEFLKR---ERADLGDGFQATYIDNLDVQLDGVDDRADRTDATLTFRGVSKTSR 252 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +D+ +P + W VR + P W++ + Sbjct: 253 FDQ------GEP-----FSESWHMVRAPGENQP-WLVAGIRQ 282 >gi|170746985|ref|YP_001753245.1| import inner membrane translocase subunit Tim44 [Methylobacterium radiotolerans JCM 2831] gi|170653507|gb|ACB22562.1| import inner membrane translocase subunit Tim44 [Methylobacterium radiotolerans JCM 2831] Length = 324 Score = 48.7 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 19/131 (14%) Query: 109 NSYEA----IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164 ++E I D++ + L + F++ L + K S V + + Sbjct: 202 QAFERLLGDIQDAYSREDRVTLGNLSTPEMVGYFDEELRGNAARGVVNKISDVKLLQGDL 261 Query: 165 INASIEENTVYITIRIVGQFISASYD-----KDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 A E+ T Y T+ A D ++S+D + ++WTF+R Sbjct: 262 AEAWGEDRTDYATVA----MRYALKDVMIERSSGRVVSTDSS---EATELWTFLRQPGRG 314 Query: 220 NPNWVLISTKL 230 WVL + + Sbjct: 315 ---WVLSAIQQ 322 >gi|145492102|ref|XP_001432049.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124399158|emb|CAK64652.1| unnamed protein product [Paramecium tetraurelia] Length = 405 Score = 48.7 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 55/127 (43%), Gaps = 5/127 (3%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 + + + ++ + + DFD + EA+ +E I + + G++ +++K+ F Sbjct: 240 SDVARAIKQMRMIDPDFDLYELEKEAKVIFEQIYNLYLLGELESLQKVCGEAALGYFKVL 299 Query: 142 LSTRKSNE-KNVKSSLVGIDDMKIINASIEENTV----YITIRIVGQFISASYDKDNLLI 196 L +++ + + L +D+++ ASI ++ TI+ F S + ++ Sbjct: 300 LKKQEAEKSEPKHKQLWNVDEIRFTRASIPDSVKLPVFVFTIKTQEIFCYVSKTDRSKIV 359 Query: 197 SSDPEIF 203 D E Sbjct: 360 DGDDERI 366 >gi|327292843|ref|XP_003231119.1| mitochondrial inner membrane translocase subunit TIM44 [Trichophyton rubrum CBS 118892] gi|326466749|gb|EGD92202.1| mitochondrial inner membrane translocase subunit TIM44 [Trichophyton rubrum CBS 118892] Length = 543 Score = 48.3 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 10/135 (7%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 V++ + +F + FL E R Y ++D++ +G V ++ + + Sbjct: 379 AENETAMVIKAFRQMDPNFQIEPFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFHV 437 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASY-DKD 192 ++ K+ ++ I + I +A + + IT R Q + +K Sbjct: 438 YSALTKQYKTAGLKSDGRILDIRHVDISHARMLEPGDIPVFIITCR--SQEVHVYRKEKT 495 Query: 193 NLLISSDPEIFGKVI 207 L + + V Sbjct: 496 GELAAGMEDRVQLVT 510 >gi|322391461|ref|ZP_08064930.1| NinF protein [Streptococcus peroris ATCC 700780] gi|321145544|gb|EFX40936.1| NinF protein [Streptococcus peroris ATCC 700780] Length = 331 Score = 48.3 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 21/172 (12%), Positives = 59/172 (34%), Gaps = 12/172 (6%) Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 D+ + N + N+ + + +FD F + A+ Y Sbjct: 106 NDQNTPPETPYRRHTTNYEPEPTSHRRVENNNQAIDRLRYHDPNFDASTFTSWAKEVYIQ 165 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE-EN 172 + ++ + +A+ L + +Y+ + L ++ V +++++I + + + Sbjct: 166 LQAAWTKKDWNAVRSLESASLYKQHSTQLEDYIQSKTTNVLERVCVENVRIKDFNSNPDG 225 Query: 173 TVYITIRIVGQFIS-ASYDKDNLLISSDPEIFGKVIDIWT-----FVRNIPP 218 + + + D+ +I +P D++T F+R Sbjct: 226 NDTLVVILSSTLRDYVVEDESRKVIEGNP-----QKDLFTVYQMNFIRKHGS 272 >gi|115534069|ref|NP_497347.3| hypothetical protein Y119D3B.16 [Caenorhabditis elegans] gi|97537043|sp|Q95Y71|RM45_CAEEL RecName: Full=Probable 39S ribosomal protein L45, mitochondrial; Flags: Precursor gi|78771770|gb|AAK29715.4| Hypothetical protein Y119D3B.16 [Caenorhabditis elegans] Length = 357 Score = 48.3 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 49/142 (34%), Gaps = 13/142 (9%) Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151 + FD K F +A + Y + + A+ K + + + + Sbjct: 165 KQGFEKFDIKTFCAKAEDIYVQAHRALEQRDKTAMYKYITEYAFAKMWPDVE-----NGS 219 Query: 152 VKSSLVGIDDMKIINA--------SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203 V+ L+ + + + A + IT+R+ + A YD+ L+ + Sbjct: 220 VRFELISVLEPSRVVAVRCFDNPPKSGNDIAQITVRMHTRQKLAVYDRFGGLLLGSEDEE 279 Query: 204 GKVIDIWTFVRNIPPSNPNWVL 225 V++ F +I + W L Sbjct: 280 KDVVEYVVFENHIAVVDGEWRL 301 >gi|328859204|gb|EGG08314.1| hypothetical protein MELLADRAFT_47868 [Melampsora larici-populina 98AG31] Length = 497 Score = 48.3 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 6/131 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 T KV+R I + DF+ FL + R Y IVD++ + + ++ Y Sbjct: 334 TETAKVVRLIKEIDRDFEFDGFLRDLRE-YIVPEIVDAYVDADLKVLKLWTSEGAYNVIT 392 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYI-TIRIVGQFISASYDKDNLLIS 197 + T ++ ++ + + I++A ++E + + I I+ + N + Sbjct: 393 APMQTYLQRGLRPENQVIDLKGIDIMSAKVLQERELPVFVIAFRTHEINCFTNPGNGKVE 452 Query: 198 -SDPEIFGKVI 207 +P+ +V Sbjct: 453 VGNPDQIEQVQ 463 >gi|302502672|ref|XP_003013297.1| hypothetical protein ARB_00482 [Arthroderma benhamiae CBS 112371] gi|291176860|gb|EFE32657.1| hypothetical protein ARB_00482 [Arthroderma benhamiae CBS 112371] Length = 584 Score = 48.3 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 10/135 (7%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 V++ + +F + FL E R Y ++D++ +G V ++ + + Sbjct: 420 AENETAMVIKAFRQMDPNFQIEPFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFHV 478 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASY-DKD 192 ++ K+ ++ I + I +A + + IT R Q + +K Sbjct: 479 YSALTKQYKTAGLKSDGRILDIRHVDISHARMLEPGDIPVFIITCR--SQEVHVYRKEKT 536 Query: 193 NLLISSDPEIFGKVI 207 L + + V Sbjct: 537 GELAAGMEDRVQLVT 551 >gi|326475398|gb|EGD99407.1| mitochondrial inner membrane translocase subunit TIM44 [Trichophyton tonsurans CBS 112818] Length = 543 Score = 48.3 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 10/135 (7%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 V++ + +F + FL E R Y ++D++ +G V ++ + + Sbjct: 379 AENETAMVIKAFRQMDPNFQIEPFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFHV 437 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASY-DKD 192 + K+ ++ I + I +A + + IT R Q + +K Sbjct: 438 YAALTKQYKTAGLKSDGRILDIRHVDISHARMLEPGDIPVFIITCR--SQEVHVYRKEKT 495 Query: 193 NLLISSDPEIFGKVI 207 + + V Sbjct: 496 GEFAAGMEDKVQLVT 510 >gi|147865818|emb|CAN78985.1| hypothetical protein VITISV_038307 [Vitis vinifera] Length = 489 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 1/91 (1%) Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 G RL + + F EA + Y+ I ++ K V +Y + Sbjct: 376 GDRLKSAYAVAKLRKIGYSRQKFYTEAVDLYKEINSQIATSAKASLRKSVTENMYSALKN 435 Query: 141 SLSTRKSNEKNVKSSLVG-IDDMKIINASIE 170 + R+S V +V + ++ + A ++ Sbjct: 436 EIKQRESKWHKVYWEMVEPVVKIRTLRARMD 466 >gi|54295462|ref|YP_127877.1| hypothetical protein lpl2548 [Legionella pneumophila str. Lens] gi|53755294|emb|CAH16788.1| hypothetical protein lpl2548 [Legionella pneumophila str. Lens] gi|307611500|emb|CBX01174.1| hypothetical protein LPW_28731 [Legionella pneumophila 130b] Length = 270 Score = 48.3 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 29/222 (13%), Positives = 76/222 (34%), Gaps = 44/222 (19%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 G L+ + FFV LR + + F T ++ Sbjct: 88 GLITWLILGSVIFFVVSFLR----------RKMNPGFQA-------------TQSGAFRQ 124 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 ++ + + + N T FD +FL +A+ ++ + ++ + + ++ Sbjct: 125 NSFEQFTQNY---GNRNSGGAHFTQQETSFDADNFLRDAKVTFIRLQAAYDQKNLQDLQT 181 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 V+ + L R ++ ++ + D K+++ S + ++ +++ G + Sbjct: 182 FTVPEVFAEIKMQLDERGDAPN--QTEVISL-DAKLLDVSKQSLSMIASVQFTG-----T 233 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ + + +IW F R WV+ + Sbjct: 234 IKENGEI--------SNLDEIWHF-RQFDNRK-EWVVGGIQQ 265 >gi|296417773|ref|XP_002838527.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634466|emb|CAZ82718.1| unnamed protein product [Tuber melanosporum] Length = 512 Score = 47.9 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 8/134 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 V+R + +F + FL E R Y ++D++ +G ++ + + Y Sbjct: 348 AENETALVIRKFREMDPNFQVEPFLRELRE-YILPEVLDAYCKGDTDVLKAWLSAAQYNV 406 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193 + +N + ++ I ++ I++A I E I + I+ Q + D K Sbjct: 407 YAALNQQYTANGLKLDGKVLDIRNVDILSARILEP-GEIPVFIITCRTQEVHVYRDLKTG 465 Query: 194 LLISSDPEIFGKVI 207 L + + +V Sbjct: 466 ELKAGMEDKVQQVT 479 >gi|149577603|ref|XP_001516222.1| PREDICTED: similar to Timm44 protein [Ornithorhynchus anatinus] Length = 452 Score = 47.9 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 39/86 (45%), Gaps = 5/86 (5%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI---VDSFFEGKVHAIEKLVDSRVYQDF 138 T +++V+ +I+ V FD FL + ++ + I +++ G++ ++ Y Sbjct: 296 TEMSEVLTEILKVDPTFDKDHFLRQCKD--DIIPNILEAMIAGELDILKDWCYEATYSQL 353 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKI 164 + K+ S ++ ID++ + Sbjct: 354 AHPIQQAKAMGLQFHSRILDIDNIDV 379 >gi|325118573|emb|CBZ54124.1| hypothetical protein NCLIV_045570 [Neospora caninum Liverpool] Length = 624 Score = 47.9 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 22/195 (11%), Positives = 62/195 (31%), Gaps = 24/195 (12%) Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIG-----TRLNKVM 88 + G E+P + + + K+ L + E + T + + Sbjct: 397 RPGEERPTPEEQREDALVLSQRTTWDRFSSRFKEMSFLQNFFENPLVAQLFGETEIAASI 456 Query: 89 RDIVSVYTDF---DPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145 R++ + F D + + R IV +F G + + S+ R Sbjct: 457 REMKILDPKFKLGDLHNMME--RVVAGHIVQAFLLGDEGTLAVHCAEGAFAALRASIIER 514 Query: 146 KSNEKNVKSSLVGIDDMKIINAS------------IEENTVYITIR-IVGQFISASYDK- 191 ++ + + S ++ + +++++ A + + Q ++ + Sbjct: 515 RAQKVRLDSEILQLGNVELVGARRSITPPICATANFSADECPWFVYTFTCQQVNCLRSEV 574 Query: 192 DNLLISSDPEIFGKV 206 D ++ + +V Sbjct: 575 DGRVVEGREDDIRRV 589 >gi|289618005|emb|CBI55582.1| unnamed protein product [Sordaria macrospora] Length = 520 Score = 47.9 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 10/135 (7%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 +V++ + V F+ ++FL E R Y +++++ +G V ++ + Y Sbjct: 356 AENETAQVIKKLREVDPGFNMENFLMELRE-YILPEVLEAYVKGDVQTLKLWLSEAQYSV 414 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE----NTVYITIRIVGQFISASYD-KD 192 + + ++ I + ++ A + + IT R Q + + K Sbjct: 415 YEALTKQYLTAGLKSDGRILDIRGVDVLKARMLDPGDIPVFVITCR--TQEVHVYKNAKT 472 Query: 193 NLLISSDPEIFGKVI 207 L + + V Sbjct: 473 GKLAAGMEDKVQLVT 487 >gi|239613424|gb|EEQ90411.1| mitochondrial inner membrane translocase subunit TIM44 [Ajellomyces dermatitidis ER-3] Length = 522 Score = 47.9 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 11/147 (7%) Query: 32 GKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD-------NLDSINELFPIGTRL 84 G++ EK +G V +D + + + NL Sbjct: 304 GRRP-LEKMEEDPNAGTNVTLHKDAAWKESWKEFRDSSRLMQSYFNLKHTYNESENPNET 362 Query: 85 NKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 KV++ + F + FL E R Y ++D++ +G V ++ + Y + Sbjct: 363 AKVIKKFREMDPSFQIEPFLRELRE-YMLPEVLDAYVKGDVETLKLWLSEAQYNVYAALA 421 Query: 143 STRKSNEKNVKSSLVGIDDMKIINASI 169 + ++ I + I +A + Sbjct: 422 QQYTTAGLKSDGRILDIRHVDISHARM 448 >gi|296807829|ref|XP_002844253.1| mitochondrial inner membrane translocase subunit TIM44 [Arthroderma otae CBS 113480] gi|238843736|gb|EEQ33398.1| mitochondrial inner membrane translocase subunit TIM44 [Arthroderma otae CBS 113480] Length = 540 Score = 47.9 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 47/134 (35%), Gaps = 8/134 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 V++ + +F + FL E R Y ++D++ +G V ++ + + Sbjct: 376 AENETAMVIKTFRQMDPNFQIEPFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFHV 434 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG----QFISASYDKDN 193 + K+ ++ I + I +A + E I + I+ + +K Sbjct: 435 YAALTKQYKTAGLKSDGRILDIRHVDISHARMLEP-GDIPVFIITCRTQEVHVYRKEKTG 493 Query: 194 LLISSDPEIFGKVI 207 L + + V Sbjct: 494 ELAAGMEDKVQLVT 507 >gi|218894631|ref|YP_002443501.1| hypothetical protein PLES_59241 [Pseudomonas aeruginosa LESB58] gi|218774860|emb|CAW30678.1| hypothetical protein PLES_59241 [Pseudomonas aeruginosa LESB58] Length = 284 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 69/221 (31%), Gaps = 35/221 (15%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 ILL A + F+ + ++++ G + Sbjct: 98 MLDILLIALVA-FIAFR-------------------FIAARRRQQNQGQPAMAGHAPMQR 137 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + + +F +++ + F+ + F+ AR + ++ + ++ I + Sbjct: 138 EMPAQAPIFGGAAAAAAAPSPVINAPSWFNEERFVGAAREHFMSLQQHWDANEMDKIAEF 197 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V ++ Q R +S+ + D+++ + + T+ G ++ + Sbjct: 198 VTPQMLQWLKQ---ERAEIGDAYQSTYIDNLDVQLDGVDDQADKTIATLTFSGVSKTSRF 254 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D+ + W R + P W++ + Sbjct: 255 DQGEA-----------FSESWRMERAQGENQP-WLVAGIRQ 283 >gi|317404450|gb|EFV84863.1| hypothetical protein HMPREF0005_02511 [Achromobacter xylosoxidans C54] Length = 178 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 44/134 (32%), Gaps = 17/134 (12%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 DFD +FL +A+ + I + G + + + + L+ R + + L Sbjct: 55 DFDTPNFLKQAKEQFVRIQAVWDSGSTDRLRDYLTDDLITELKPQLAERGAAPNKTEVVL 114 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 + +++ + ++R G + + ++W Sbjct: 115 LN---AELLGIETVSDGHLASVRFSGMLR-----------ETPGAEAFRFEEVWNL---F 157 Query: 217 PPSNPNWVLISTKL 230 P+N W+L + Sbjct: 158 KPANGGWLLAGIQQ 171 >gi|330505764|ref|YP_004382633.1| import inner membrane translocase subunit Tim44 [Pseudomonas mendocina NK-01] gi|328920050|gb|AEB60881.1| import inner membrane translocase, subunit Tim44 [Pseudomonas mendocina NK-01] Length = 284 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 64/217 (29%), Gaps = 33/217 (15%) Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73 L+F I F+ + L + ++P Y + G L S Sbjct: 100 LIFGLIA-FLLFRF---LAARRARQQPQMAAAGAPYQREMPNADNAPAAGSNIFGGRLAS 155 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 + F+ + F+ R + + + ++ I + V + Sbjct: 156 AAPVINAPAW--------------FNEQSFIAAGREHFMNLQQHWDADEMDKIAEFVTPQ 201 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 + R +S+ IDD+++ +++N + A+ Sbjct: 202 LLDFLKR---ERAELGDGFQST--YIDDLQVQLDGVDDN---------AEKTIATLTFSG 247 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + +S + + W R + P W++ + Sbjct: 248 VSKTSRFDQGEPFSESWRLERAQGDNQP-WLIAGIRQ 283 >gi|73960044|ref|XP_855187.1| PREDICTED: similar to 39S ribosomal protein L45, mitochondrial precursor (L45mt) (MRP-L45) [Canis familiaris] Length = 213 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 12/144 (8%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I +F KDF +A++ + + LV + D + Sbjct: 42 IRKIREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIK---- 97 Query: 148 NEKNVKSSLV-GIDDMKIINA-----SIEENT-VYITIRIVGQFISASYDKDNLLISSDP 200 K V S V ++ +++ + N +T+R + A YD+ L+ Sbjct: 98 -YKMVHWSFVESLEPPQVVQVCCSNLLNQGNIYSQVTVRKHTRQTLAIYDRFGRLMYGQE 156 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWV 224 ++ V++ F +++ +W Sbjct: 157 DVPRDVLEYVVFEKHLVNPYGSWR 180 >gi|311894532|dbj|BAJ26940.1| hypothetical protein KSE_11060 [Kitasatospora setae KM-6054] Length = 443 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/187 (10%), Positives = 57/187 (30%), Gaps = 12/187 (6%) Query: 50 VFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN 109 + KR R L + S + ++ + + F+ A Sbjct: 74 MRRKRKARQAAGLNTVSDRTAHRSDEQARERAAQIGARVDALAETDPTFERGALEQRAVW 133 Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 Y ++ + +++ +Y + + L S + +V ++++++ + Sbjct: 134 LYTTAQQAWTRQDHAMLRQILSPVLYGKWAEELHDYASRGETNVVEIVAGPEVELVDLAN 193 Query: 170 EENTVYITIRI-----VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 + T+ + ++ Y +D+ + WT + W+ Sbjct: 194 RTGELNDTVTFRITATLNDYVRRQYGEDSARKDGSTRPV----EYWTLRKGPAGE---WI 246 Query: 225 LISTKLG 231 + S + Sbjct: 247 VSSIEQA 253 >gi|330898717|gb|EGH30136.1| import inner membrane translocase, subunit Tim44 [Pseudomonas syringae pv. japonica str. M301072PT] Length = 155 Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 19/168 (11%), Positives = 54/168 (32%), Gaps = 15/168 (8%) Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 + + G+ +++ F+ + FL+ AR ++++ + + Sbjct: 1 AAPPYQRETSQPAQNPIFGSSSPASAAPVINAPAWFNEQRFLDAARGHFQSLQQHWDANE 60 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + I + V ++ Q R +S+ + +++ + T+ G Sbjct: 61 MDKIAEFVTPQMLQFLK---KERADLGDGFQSTYIENLQVQLDGVDDRADKTIATLTFSG 117 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ +D + S W R + P W++ + Sbjct: 118 VSKTSRFD-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 153 >gi|313111531|ref|ZP_07797330.1| hypothetical protein PA39016_003370006 [Pseudomonas aeruginosa 39016] gi|310883832|gb|EFQ42426.1| hypothetical protein PA39016_003370006 [Pseudomonas aeruginosa 39016] Length = 283 Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 69/223 (30%), Gaps = 40/223 (17%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 ILL A + F+ + ++ ++R ++ Sbjct: 98 MLDILLIALVA-FIAFR----------------------FIAARRRQQNQGQPAMAGHAP 134 Query: 70 NLDSINELFPI--GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 + PI G +++ + F+ + F+ AR + ++ + ++ I Sbjct: 135 MQREMPAQAPIFGGAAATAAPSPVINAPSWFNEERFVGAAREHFMSLQQHWDANEMDKIA 194 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 + V ++ Q R +S+ + +++ + + T+ G ++ Sbjct: 195 EFVTPQMLQWLKQ---ERAEIGDAYQSTYIDNLVVQLDGVDDQADKTIATLTFSGVSKTS 251 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +D+ + W R + P W++ + Sbjct: 252 RFDQGEA-----------FSESWRMERAQGENQP-WLVAGIRQ 282 >gi|171694970|ref|XP_001912409.1| hypothetical protein [Podospora anserina S mat+] gi|170947727|emb|CAP59890.1| unnamed protein product [Podospora anserina S mat+] Length = 569 Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 10/135 (7%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 V++ + ++ F + FL E R Y ++D++ +G V ++ + Y Sbjct: 405 AENETAMVIKKVRTMDPAFQMETFLQELRE-YILPEVLDAYVKGDVETLKLWLSEAQYSV 463 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE----NTVYITIRIVGQFISASYD-KD 192 + N ++ I + ++ A + + IT R Q + + K Sbjct: 464 YEALTKQYLQNGLKSDGRILDIRGVDVLKARMLDPGEIPVFVITCR--TQEVHVYRNAKT 521 Query: 193 NLLISSDPEIFGKVI 207 L + + V Sbjct: 522 GKLAAGMEDKVSLVT 536 >gi|67521648|ref|XP_658885.1| hypothetical protein AN1281.2 [Aspergillus nidulans FGSC A4] gi|40746718|gb|EAA65874.1| hypothetical protein AN1281.2 [Aspergillus nidulans FGSC A4] Length = 519 Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 16/164 (9%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDS---RV 134 +V++ + +F + FL E R Y ++D++ +G + ++ + V Sbjct: 355 AENETAQVVKKFREMDPNFQMEAFLREMRE-YILPEVLDAYVKGDIETLKLWLSDAQFHV 413 Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYD-K 191 Y+ ++T ++ I + +++A + + + Q + + K Sbjct: 414 YEALTKQITT---AGLKSDGRILDIRGVDVMSARMLDPGDIPVFVVMCRTQEVHVYRNVK 470 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNI-PPSNPN---WVLISTKLG 231 N L + + V + R +NP W LI + Sbjct: 471 TNELAAGMEDKVQLVNYVMGLTRIPEDVNNPETKGWRLIELQKA 514 >gi|108761631|ref|YP_631938.1| hypothetical protein MXAN_3756 [Myxococcus xanthus DK 1622] gi|108465511|gb|ABF90696.1| hypothetical protein MXAN_3756 [Myxococcus xanthus DK 1622] Length = 654 Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 51/139 (36%), Gaps = 12/139 (8%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 + + F+ + L++ + + + ++F + + + +Q F L ++ Sbjct: 129 VNALKLKDPAFELEPMLDKTKWLFMELQQAWFLRDMTPVRPFLSDATFQRFGVQLELMRA 188 Query: 148 NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD---PEIFG 204 + + D+++I + I +R+ + D D + SD E Sbjct: 189 QGVRDAITDFEVLDLQLIGLDQSQWFDSIHVRVHARM----RDTDVPVSFSDAQATEAAR 244 Query: 205 KV-----IDIWTFVRNIPP 218 KV ++WTFVR Sbjct: 245 KVPSEAFTEVWTFVRKPGA 263 >gi|327351927|gb|EGE80784.1| TIM23 translocase complex subunit Tim44 [Ajellomyces dermatitidis ATCC 18188] Length = 615 Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 3/92 (3%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137 KV++ + F + FL E R Y ++D++ +G V ++ + Y Sbjct: 451 AENETAKVIKKFREMDPSFQIEPFLRELRE-YMLPEVLDAYVKGDVETLKLWLSEAQYNV 509 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 + + ++ I + I +A + Sbjct: 510 YAALAQQYTTAGLKSDGRILDIRHVDISHARM 541 >gi|259488396|tpe|CBF87801.1| TPA: mitochondrial inner membrane translocase subunit TIM44, putative (AFU_orthologue; AFUA_1G09840) [Aspergillus nidulans FGSC A4] Length = 514 Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 16/164 (9%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDS---RV 134 +V++ + +F + FL E R Y ++D++ +G + ++ + V Sbjct: 350 AENETAQVVKKFREMDPNFQMEAFLREMRE-YILPEVLDAYVKGDIETLKLWLSDAQFHV 408 Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYD-K 191 Y+ ++T ++ I + +++A + + + Q + + K Sbjct: 409 YEALTKQITT---AGLKSDGRILDIRGVDVMSARMLDPGDIPVFVVMCRTQEVHVYRNVK 465 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNI-PPSNPN---WVLISTKLG 231 N L + + V + R +NP W LI + Sbjct: 466 TNELAAGMEDKVQLVNYVMGLTRIPEDVNNPETKGWRLIELQKA 509 >gi|295669600|ref|XP_002795348.1| mitochondrial inner membrane translocase subunit TIM44 [Paracoccidioides brasiliensis Pb01] gi|226285282|gb|EEH40848.1| mitochondrial inner membrane translocase subunit TIM44 [Paracoccidioides brasiliensis Pb01] Length = 533 Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 10/135 (7%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137 V++ + F + FL E R Y ++D++ +G + ++ + Y Sbjct: 369 AENETAMVIKKFREMDPSFQIEPFLRELRE-YMLPEVLDAYVKGDIETLKLWLSEAQYNV 427 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASYD-KD 192 + + ++ I + I +A + + IT R Q + + K Sbjct: 428 YAALAKQYTTAGLKSDGRILDIRHVDISHARMLEPGDIPVFIITCR--TQEVHVYRNAKT 485 Query: 193 NLLISSDPEIFGKVI 207 N L + + V Sbjct: 486 NELAAGMEDKVQLVT 500 >gi|261194711|ref|XP_002623760.1| mitochondrial inner membrane translocase subunit TIM44 [Ajellomyces dermatitidis SLH14081] gi|239588298|gb|EEQ70941.1| mitochondrial inner membrane translocase subunit TIM44 [Ajellomyces dermatitidis SLH14081] Length = 540 Score = 46.8 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 3/92 (3%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137 KV++ + F + FL E R Y ++D++ +G V ++ + Y Sbjct: 376 AENETAKVIKKFREMDPSFQIEPFLRELRE-YMLPEVLDAYVKGDVETLKLWLSEAQYNV 434 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 + + ++ I + I +A + Sbjct: 435 YAALAQQYTTAGLKSDGRILDIRHVDISHARM 466 >gi|290977539|ref|XP_002671495.1| predicted protein [Naegleria gruberi] gi|284085064|gb|EFC38751.1| predicted protein [Naegleria gruberi] Length = 405 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 40/89 (44%), Gaps = 7/89 (7%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND---SLSTRKSNEKN 151 DF+ K+F+ A+ +++ I + E +E + Y+ F + ++ + Sbjct: 99 DADFNEKEFIEGAKEAFKTIRELLVE-DPTQLEPMFTQSAYEGFKEWYKFIT--EEKHCK 155 Query: 152 VKSSLVGIDDMKIINASIE-ENTVYITIR 179 + SL + + +I+N ++ + I +R Sbjct: 156 IVGSLENLGETEILNIRVDADGETIINVR 184 >gi|320586817|gb|EFW99480.1| mitochondrial inner membrane translocase subunit [Grosmannia clavigera kw1407] Length = 554 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 21/177 (11%) Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVH 124 + D I F V++ + + F + FL E R Y ++D++ +G V Sbjct: 378 ARSITDRIAGFFAE-NETAMVIKKLRQMDPAFQLEPFLRELRE-YILPEVLDAYVKGDVE 435 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG-- 182 ++ + + + ++ I + I+ A + E I + I+ Sbjct: 436 TLKLWLSEAQFSVYEALTKQYLQAGLKSDGRILDIRHVDILKARMLEP-GEIPVFIITCR 494 Query: 183 --QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP-----PSNPN---WVLISTK 229 + K L + + V T+ I SNP W LI + Sbjct: 495 TQEVHVYRKVKSGDLAAGMEDKVQLV----TYAIGITRMPDDVSNPETRGWRLIEMQ 547 >gi|154314867|ref|XP_001556757.1| hypothetical protein BC1G_04775 [Botryotinia fuckeliana B05.10] gi|150848313|gb|EDN23506.1| hypothetical protein BC1G_04775 [Botryotinia fuckeliana B05.10] Length = 541 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 52/134 (38%), Gaps = 9/134 (6%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 +V++ + F + FL E R Y ++D++ +G ++ + + + Sbjct: 378 AENETAQVIKKFREMDPSFQMEPFLREMRE-YILPEVLDAYVKGDTETLKLWLSAAQFSV 436 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV---YITIRIVGQFISASYD-KDN 193 ++ + ++ I +++++A + +N + IT R Q + + K N Sbjct: 437 YDALSKQYTTAGLKSDGRILDIRHVEVLSARMLDNDIPVFIITCR--TQEVHVYRNAKTN 494 Query: 194 LLISSDPEIFGKVI 207 L + + V Sbjct: 495 QLAAGMEDKVQLVT 508 >gi|221486633|gb|EEE24894.1| import inner membrane translocase subunit TIM44, putative [Toxoplasma gondii GT1] Length = 598 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/142 (10%), Positives = 49/142 (34%), Gaps = 19/142 (13%) Query: 82 TRLNKVMRDIVSVYTDF---DPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138 T + +R++ + F D + + ++ IV +F G + + Sbjct: 424 TEIAASIREMKILDPKFKLADMHNMMERVIAAH--IVQAFLLGDEGTLAVHCAEGAFAAM 481 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS------------IEENTVYITIR-IVGQFI 185 S+ R++ + + S ++ + +++++ A + + Q + Sbjct: 482 RASIIERRAQKVRLDSEILQLGNVELVGARRSLTPPICATQNFSADECPWFVYTFTCQQV 541 Query: 186 SASYDK-DNLLISSDPEIFGKV 206 + + D ++ + +V Sbjct: 542 NCLRSEVDGRVVEGREDDIRRV 563 >gi|70995173|ref|XP_752351.1| mitochondrial inner membrane translocase subunit TIM44, putative [Aspergillus fumigatus Af293] gi|66849986|gb|EAL90313.1| mitochondrial inner membrane translocase subunit TIM44, putative [Aspergillus fumigatus Af293] gi|159131108|gb|EDP56221.1| mitochondrial inner membrane translocase subunit TIM44, putative [Aspergillus fumigatus A1163] Length = 523 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 58/166 (34%), Gaps = 20/166 (12%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 +V++ + +F + FL E R Y ++D++ +G + ++ + + Sbjct: 359 AENETAQVIKKFREMDPNFQMESFLREMRE-YILPEVLDAYVKGDIETLKLWLSDAQFHV 417 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193 + + ++ I + + +A + E I + +V Q + + K Sbjct: 418 YAALSKQYTTAGLKSDGRILDIRGVDVSHARMLEP-GEIPVFVVTCRTQEVHVYRNVKTG 476 Query: 194 LLISSDPEIFGKVIDIWTFVRNIP-----PSNPN---WVLISTKLG 231 L + + V T+ + +NP W LI + Sbjct: 477 ELAAGMEDKVQLV----TYAIGLTRIPEDVNNPETRGWRLIELQKA 518 >gi|237834217|ref|XP_002366406.1| mitochondrial import inner membrane translocase TIM44, putative [Toxoplasma gondii ME49] gi|211964070|gb|EEA99265.1| mitochondrial import inner membrane translocase TIM44, putative [Toxoplasma gondii ME49] Length = 598 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/142 (10%), Positives = 49/142 (34%), Gaps = 19/142 (13%) Query: 82 TRLNKVMRDIVSVYTDF---DPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138 T + +R++ + F D + + ++ IV +F G + + Sbjct: 424 TEIAASIREMKILDPKFKLADMHNMMERVIAAH--IVQAFLLGDEGTLAVHCAEGAFAAM 481 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS------------IEENTVYITIR-IVGQFI 185 S+ R++ + + S ++ + +++++ A + + Q + Sbjct: 482 RASIIERRAQKVRLDSEILQLGNVELVGARRSLTPPICATQNFSADECPWFVYTFTCQQV 541 Query: 186 SASYDK-DNLLISSDPEIFGKV 206 + + D ++ + +V Sbjct: 542 NCLRSEVDGRVVEGREDDIRRV 563 >gi|226290219|gb|EEH45703.1| mitochondrial inner membrane translocase subunit TIM44 [Paracoccidioides brasiliensis Pb18] Length = 534 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 10/135 (7%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137 V++ + F + FL E R Y ++D++ +G + ++ + Y Sbjct: 370 AENETAMVIKKFREMDPSFQIEPFLRELRE-YMLPEVLDAYVKGDIETLKLWLSEAQYNV 428 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASYD-KD 192 + + ++ I + I +A + + IT R Q + + K Sbjct: 429 YAALAKQYTTAGLKSDGRILDIRHVDISHARMLEPGDIPVFIITCR--TQEVHVYRNAKT 486 Query: 193 NLLISSDPEIFGKVI 207 N L + + V Sbjct: 487 NELAAGMEDKVQLVT 501 >gi|308460507|ref|XP_003092557.1| hypothetical protein CRE_26805 [Caenorhabditis remanei] gi|308253077|gb|EFO97029.1| hypothetical protein CRE_26805 [Caenorhabditis remanei] Length = 361 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 46/142 (32%), Gaps = 13/142 (9%) Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151 + FD K F +A + Y + + + + + + + Sbjct: 167 KQGFEKFDVKTFCAKAEDIYVRAHKALEARDKKEMYRCITEYAFAKMWPDVE-----NGS 221 Query: 152 VKSSLVGIDDMKIINA--------SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203 V+ LV + + + A + IT+R+ + A YD+ LI Sbjct: 222 VRFELVEVVEPSRVVAVRCFDNPPKSGNDIAQITVRMHTKQKLAVYDRFGGLILGSENEE 281 Query: 204 GKVIDIWTFVRNIPPSNPNWVL 225 V++ F +I + W L Sbjct: 282 KDVVEYVVFENHIAVVDGEWRL 303 >gi|225682773|gb|EEH21057.1| TIM23 translocase complex subunit Tim44 [Paracoccidioides brasiliensis Pb03] Length = 534 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 10/135 (7%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137 V++ + F + FL E R Y ++D++ +G + ++ + Y Sbjct: 370 AENETAMVIKKFREMDPSFQIEPFLRELRE-YMLPEVLDAYVKGDIETLKLWLSEAQYNV 428 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASYD-KD 192 + + ++ I + I +A + + IT R Q + + K Sbjct: 429 YAALAKQYTTAGLKSDGRILDIRHVDISHARMLEPGDIPVFIITCR--TQEVHVYRNAKT 486 Query: 193 NLLISSDPEIFGKVI 207 N L + + V Sbjct: 487 NELAAGMEDKVQLVT 501 >gi|119496017|ref|XP_001264782.1| mitochondrial inner membrane translocase subunit TIM44, putative [Neosartorya fischeri NRRL 181] gi|119412944|gb|EAW22885.1| mitochondrial inner membrane translocase subunit TIM44, putative [Neosartorya fischeri NRRL 181] Length = 509 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 58/166 (34%), Gaps = 20/166 (12%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 +V++ + +F + FL E R Y ++D++ +G + ++ + + Sbjct: 345 AENETAQVIKKFREMDPNFQMESFLREMRE-YILPEVLDAYVKGDIETLKLWLSDAQFHV 403 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193 + + ++ I + + +A + E I + +V Q + + K Sbjct: 404 YAALSKQYTTAGLKSDGRILDIRGVDVSHARMLEP-GEIPVFVVTCRTQEVHVYRNVKTG 462 Query: 194 LLISSDPEIFGKVIDIWTFVRNIP-----PSNPN---WVLISTKLG 231 L + + V T+ + +NP W LI + Sbjct: 463 ELAAGMEDKVQLV----TYAIGLTRIPEDVNNPETRGWRLIELQKA 504 >gi|89897269|ref|YP_520756.1| hypothetical protein DSY4523 [Desulfitobacterium hafniense Y51] gi|89336717|dbj|BAE86312.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 315 Score = 46.4 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 73/205 (35%), Gaps = 7/205 (3%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 I L I ++ G ++T + G + +T + Sbjct: 87 LISIALILGI-VYLIYIAWGS-SRRTWKNQRSKGHSNYNNHNDSSPHPIDVTGKPITNAE 144 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 NL N + MR ++ +D + + R + I D++ + E Sbjct: 145 NLRRFNNAIQ---YTRENMRYYAESFSRWDRQFLIERVRQVFFWIQDAWTRQDLTGGENY 201 Query: 130 VDSRVYQDFNDSLSTRKSNEKN--VKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 + S V Q ++ L S + +K ++ +D++ I++ + E++ Y + + I Sbjct: 202 IVSSVLQKYSLDLENMNSRGERNVIKEPVLHAEDIEFIHSYLGESSQYFVVMLRASMIDY 261 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTF 212 + D +I+ + + + W F Sbjct: 262 TVDTSGKIIAGEDDNRLYFTEFWRF 286 >gi|221508389|gb|EEE33976.1| mitochondrial import inner membrane translocase TIM44, putative [Toxoplasma gondii VEG] Length = 598 Score = 46.0 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 15/142 (10%), Positives = 49/142 (34%), Gaps = 19/142 (13%) Query: 82 TRLNKVMRDIVSVYTDF---DPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138 T + +R++ + F D + + ++ IV +F G + + Sbjct: 424 TEIAASIREMKILDPKFKLADMHNMMERVIAAH--IVQAFLLGDEGTLAVHCAEGAFAAM 481 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS------------IEENTVYITIR-IVGQFI 185 S+ R++ + + S ++ + +++++ A + + Q + Sbjct: 482 RASIIERRAQKVRLDSEILQLGNVELVGARRSLTPPICATQNFSADECPWFVYTFTCQQV 541 Query: 186 SASYDK-DNLLISSDPEIFGKV 206 + + D ++ + +V Sbjct: 542 NCLRSEVDGRVVEGREDDIRRV 563 >gi|332286636|ref|YP_004418547.1| hypothetical protein PT7_3383 [Pusillimonas sp. T7-7] gi|330430589|gb|AEC21923.1| hypothetical protein PT7_3383 [Pusillimonas sp. T7-7] Length = 314 Score = 46.0 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 18/134 (13%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 DFD FL A+ + I + G + + + + + L R + + + Sbjct: 192 DFDTSAFLANAKAQFIEIQAVWDSGDLTRLTDYMTDDLVAEIKPELMAR---GEGNVTEV 248 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 V ++ +++ ++R G A D + + ++W Sbjct: 249 VLLN-AELLGIEAVSGGHLASVRYSGMLREA-KDAE----------AFRFEEVWNL---Y 293 Query: 217 PPSNPNWVLISTKL 230 N W+L + Sbjct: 294 KGDNTGWLLAGIQQ 307 >gi|72153688|ref|XP_792216.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115703999|ref|XP_001203219.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 210 Score = 46.0 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 60/162 (37%), Gaps = 29/162 (17%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ-------DFN-DSLSTRK 146 DF +F A+ + I + EG + +E L+ ++ Q F+ +S+ Sbjct: 41 DPDFSIDEFTQGAKQALVTISEEIAEGTLENLEDLLSPKLLQEIKNTCRGFSLKEISSLS 100 Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI-SASYDKDNLLISS------D 199 + K++ + D+ I ++I ++ S S D + + Sbjct: 101 ISGKDILHTF--PHDIAIHYDDKGGKFLFILMKFWCHSTQSGSSDPE---VKGFRIGKPP 155 Query: 200 PEIFGKVID--------IWTFVRNIPP-SNPNWVLISTKLGE 232 P + + D + F RNI +NP W++ + G+ Sbjct: 156 PGVSQEQFDSLGSVYSCTYEFHRNISAGANPQWMITHMQHGQ 197 >gi|156052641|ref|XP_001592247.1| hypothetical protein SS1G_06487 [Sclerotinia sclerotiorum 1980] gi|154704266|gb|EDO04005.1| hypothetical protein SS1G_06487 [Sclerotinia sclerotiorum 1980 UF-70] Length = 344 Score = 46.0 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 52/134 (38%), Gaps = 9/134 (6%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 +V++ + F + FL E R Y ++D++ +G ++ + + + Sbjct: 181 AENETAQVIKKFREMDPSFQMEPFLREMRE-YILPEVLDAYVKGDTETLKLWLSAAQFSV 239 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV---YITIRIVGQFISASYD-KDN 193 ++ + ++ I +++++A + +N + IT R Q + + K N Sbjct: 240 YDALSKQYTTAGLKSDGRILDIRHVEVLSARMLDNDIPVFIITCR--TQEVHVYRNAKTN 297 Query: 194 LLISSDPEIFGKVI 207 L + + V Sbjct: 298 QLAAGMEDKVQLVT 311 >gi|152986284|ref|YP_001351640.1| hypothetical protein PSPA7_6329 [Pseudomonas aeruginosa PA7] gi|150961442|gb|ABR83467.1| hypothetical protein PSPA7_6329 [Pseudomonas aeruginosa PA7] Length = 281 Score = 46.0 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 68/221 (30%), Gaps = 38/221 (17%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 ILL A + F+ + ++ ++R ++ Sbjct: 98 MLDILLIALVA-FIAFR----------------------FIAARRRQQAQAQPAMAGHAP 134 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + PI +++ + F+ + F+ AR + ++ + ++ I + Sbjct: 135 MQREMPAQAPIFGGAAAAPSPVINAPSWFNEERFVGAAREHFMSLQQHWDANEMDKIAEF 194 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V ++ Q R +S+ + +++ + + T+ G ++ + Sbjct: 195 VTPQMLQWLKQ---ERAEIGDAYQSTYIDNLAVQLDGVDDQADKTIATLTFSGVSKTSRF 251 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D+ + W R + P W++ + Sbjct: 252 DQGEA-----------FSESWRMERAQGENQP-WLVAGIRQ 280 >gi|321452278|gb|EFX63702.1| hypothetical protein DAPPUDRAFT_335104 [Daphnia pulex] Length = 271 Score = 46.0 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 45/92 (48%), Gaps = 6/92 (6%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKS 154 +F DFL A+ + I ++ G + +++++++ Y + +++ R S+E+ + Sbjct: 111 DNEFTVDDFLRGAKQAIFIIANAISVGDLESVKEMLEEEAYNEIKENMK-RCSSEQLAQF 169 Query: 155 SLVGIDDMKI-----INASIEENTVYITIRIV 181 +L ++D+ + + + +N + R V Sbjct: 170 ALSTLEDVYMTFPYQVGIIMNDNKEGVQERFV 201 >gi|289677454|ref|ZP_06498344.1| import inner membrane translocase, subunit Tim44 [Pseudomonas syringae pv. syringae FF5] Length = 151 Score = 45.6 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 19/163 (11%), Positives = 54/163 (33%), Gaps = 15/163 (9%) Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 + + G+ +++ F+ + FL+ AR ++++ + ++ I Sbjct: 2 QRETSQPAQNPIFGSSSPASTAPVINAPAWFNEQRFLDAARGHFQSLQQHWDANEMDKIA 61 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 + V ++ Q R +S+ + +++ + T+ G ++ Sbjct: 62 EFVTPQMLQFLK---KERADLGDGFQSTYIENLQVQLDGVDDRADKTIATLTFSGVSKTS 118 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +D + S W R + P W++ + Sbjct: 119 RFD-QGEVFSES----------WNMERPQGDNQP-WLVAGIRQ 149 >gi|293400358|ref|ZP_06644504.1| hypothetical membrane protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306758|gb|EFE48001.1| hypothetical membrane protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 297 Score = 45.6 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 15/126 (11%), Positives = 43/126 (34%), Gaps = 1/126 (0%) Query: 78 FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD 137 G +++ I F ++F N A + + +++ H + + ++ Sbjct: 106 SNEGIFEEEIIARIQEEDPAFSAENFRNYASEVWLTLQEAWEAKDWHKVRPFESNTLFNV 165 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NLLI 196 N L + K ++ + + I + S +E + +++ + D D ++ Sbjct: 166 HNRQLQEYIDHHKTNYMNMQNVRGITIASYSSDEEHEIVHVKLDASLLDYVVDDDSGKVL 225 Query: 197 SSDPEI 202 Sbjct: 226 EGSKTD 231 >gi|258570273|ref|XP_002543940.1| mitochondrial import inner membrane translocase subunit TIM44 [Uncinocarpus reesii 1704] gi|237904210|gb|EEP78611.1| mitochondrial import inner membrane translocase subunit TIM44 [Uncinocarpus reesii 1704] Length = 500 Score = 45.6 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 8/134 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 V++ + +F + FL E R Y ++D++ +G ++ + + Sbjct: 336 AENETAMVIKRFRQMDPNFQIEPFLREMRE-YILPEVLDAYVKGDTETLKLWLSDAQFHV 394 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193 + + ++ I + I +A + E I + IV Q + + K N Sbjct: 395 YAALAKQYTTAGLKSDGRILDIRHVDISHARMLEP-GDIPVFIVTCRTQEVHVYRNAKTN 453 Query: 194 LLISSDPEIFGKVI 207 L + + V Sbjct: 454 ELAAGMEDKVQLVT 467 >gi|224088015|ref|XP_002196182.1| PREDICTED: similar to translocase of inner mitochondrial membrane Tim44, partial [Taeniopygia guttata] Length = 365 Score = 45.6 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 6/114 (5%) Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 + I + D I LF T +++V+ +I+ V FD FL + + Sbjct: 255 DESDNAFIRASRAVTDRVTDLIGGLFSK-TEMSEVLTEILKVDPSFDKDRFLKQCER--D 311 Query: 113 AI---VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163 I +++ G++ ++ Y + K+ S ++ ID++ Sbjct: 312 IIPNVLEALISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNID 365 >gi|121702021|ref|XP_001269275.1| mitochondrial inner membrane translocase subunit TIM44, putative [Aspergillus clavatus NRRL 1] gi|119397418|gb|EAW07849.1| mitochondrial inner membrane translocase subunit TIM44, putative [Aspergillus clavatus NRRL 1] Length = 512 Score = 45.6 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 58/166 (34%), Gaps = 20/166 (12%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 +V++ + +F + FL E R Y ++D++ +G V ++ + + Sbjct: 348 AENETAQVIKKFREMDPNFQMESFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFHV 406 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193 + + ++ I + + NA + E I + +V Q + + K Sbjct: 407 YAALSKQYTTAGLKSDGRILDIRGVDVSNARMLEP-GEIPVFVVTCRTQEVHVYRNVKSG 465 Query: 194 LLISSDPEIFGKVIDIWTFVRNIP-----PSNPN---WVLISTKLG 231 L + + V T+ + +NP W LI + Sbjct: 466 ELAAGMEDKVQLV----TYAIGLTRIPEDVNNPETRGWRLIELQKA 507 >gi|322693819|gb|EFY85667.1| mitochondrial inner membrane translocase subunit TIM44, putative [Metarhizium acridum CQMa 102] Length = 538 Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 48/134 (35%), Gaps = 8/134 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 V++ S+ F + FL E R Y ++D++ +G ++ + + + Sbjct: 374 AENETALVIKKFRSMDPAFQVEPFLQELRE-YILPEVLDAYVKGDTETLKLWLSAAQFSV 432 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193 + ++ I ++ I+ A + + + + I+ Q + + K N Sbjct: 433 YEALTKQYLQAGMKSDGRILDIRNVDILRARMLDP-GEVPVFIITCRTQEVHVYRNAKTN 491 Query: 194 LLISSDPEIFGKVI 207 L + + V Sbjct: 492 ELAAGMEDKVQLVT 505 >gi|145614776|ref|XP_001414030.1| hypothetical protein MGG_11419 [Magnaporthe oryzae 70-15] gi|145021662|gb|EDK05791.1| hypothetical protein MGG_11419 [Magnaporthe oryzae 70-15] Length = 551 Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 10/135 (7%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 V++ + + F + FLN+ R Y ++D++ +G V ++ + + Sbjct: 387 AENETAMVIKKLRQMDPAFQLEPFLNDLRE-YILPEVLDAYVKGDVETLKLWLSEAQFSV 445 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASYD-KD 192 + +V I + I+ A + + IT R Q + + K Sbjct: 446 YEALTKQYLQMGMKSDGKIVDIRGVDILKARLLEPGDIPVFIITCR--TQEVHVYRNAKS 503 Query: 193 NLLISSDPEIFGKVI 207 L + + V Sbjct: 504 GELAAGMEDRVQLVT 518 >gi|297265563|ref|XP_002808078.1| PREDICTED: LOW QUALITY PROTEIN: 39S ribosomal protein L45, mitochondrial-like [Macaca mulatta] Length = 497 Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 12/144 (8%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I +F KDF +A+N + + LV + D + Sbjct: 313 IRRIKDYDANFKIKDFPEKAKNIFIEAHLCLNNSDHDRLYTLVTEHCFPDMTWDIK---- 368 Query: 148 NEKNVKSSLV------GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSDP 200 K V+ S V + + + + N +T+ + + A YD+ L+ Sbjct: 369 -YKTVRXSFVESLEPSHVVQVHCSSIMNQGNVYGQVTVCMHTRQTLAIYDRFGRLMYGQE 427 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWV 224 ++ V++ F + + +W Sbjct: 428 DVPKDVLEYVVFEKQLTNPYGSWR 451 >gi|254582268|ref|XP_002497119.1| ZYRO0D15840p [Zygosaccharomyces rouxii] gi|238940011|emb|CAR28186.1| ZYRO0D15840p [Zygosaccharomyces rouxii] Length = 407 Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 48/142 (33%), Gaps = 8/142 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137 T KV+ + F + F + R+ Y +++++ +G ++K + Sbjct: 242 AETETAKVIGQFKLLDPSFTSEGFTRQLRD-YVIPEVLEAYAKGDEKTLKKWFSEAPFNV 300 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193 + + + S ++ I + I++A + I + IV Q I K Sbjct: 301 YAAQQKFFRDQKLFADSRILDIRGVDIVSAKLLPPQ-DIPVLIVGCRAQEIQLYRSIKSG 359 Query: 194 LLISSDPEIFGKVIDIWTFVRN 215 + + F R+ Sbjct: 360 EVAAGHESNILMSSYAMVFTRD 381 >gi|222110012|ref|YP_002552276.1| import inner membrane translocase subunit tim44 [Acidovorax ebreus TPSY] gi|221729456|gb|ACM32276.1| import inner membrane translocase subunit Tim44 [Acidovorax ebreus TPSY] Length = 335 Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 11/137 (8%), Positives = 46/137 (33%), Gaps = 16/137 (11%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS-NEKNV--K 153 FD + FL+ A+ ++ + ++ V + ++ + + L+ R+S + Sbjct: 210 GFDTEGFLSAAKRNFTTLQAAWDRSDVATLRSMMTDSMVDEIRTQLNERESHRGDQQPNQ 269 Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213 + ++ + + +++ + ++ ++ ++W Sbjct: 270 TDVIML-EAQLLGIEDLGDGYMASVEFS-----------GMIREEPSAGPSPFREVWNMT 317 Query: 214 RNIPPSNPNWVLISTKL 230 + W++ + Sbjct: 318 KP-KNGASGWLVAGVQA 333 >gi|307185468|gb|EFN71468.1| Uncharacterized protein C2orf47-like protein, mitochondrial [Camponotus floridanus] Length = 178 Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 22/56 (39%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +R + +FD +FL A+ + I + +++ LV + + + Sbjct: 25 LRIAPYIDKEFDIAEFLKGAKYATAIISKALTNKNYDSLQGLVTEDMIEILRAKIE 80 >gi|15600721|ref|NP_254215.1| hypothetical protein PA5528 [Pseudomonas aeruginosa PAO1] gi|107104630|ref|ZP_01368548.1| hypothetical protein PaerPA_01005709 [Pseudomonas aeruginosa PACS2] gi|254237792|ref|ZP_04931115.1| hypothetical protein PACG_03888 [Pseudomonas aeruginosa C3719] gi|254243078|ref|ZP_04936400.1| hypothetical protein PA2G_03868 [Pseudomonas aeruginosa 2192] gi|9951866|gb|AAG08913.1|AE004965_5 hypothetical protein PA5528 [Pseudomonas aeruginosa PAO1] gi|126169723|gb|EAZ55234.1| hypothetical protein PACG_03888 [Pseudomonas aeruginosa C3719] gi|126196456|gb|EAZ60519.1| hypothetical protein PA2G_03868 [Pseudomonas aeruginosa 2192] Length = 284 Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 23/221 (10%), Positives = 68/221 (30%), Gaps = 35/221 (15%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 ILL A + F+ + ++++ G + Sbjct: 98 MLDILLIALVA-FIAFR-------------------FIAARRRQQNQGQPAMAGHAPMQR 137 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + + +F +++ + F+ + F+ AR + ++ + ++ I + Sbjct: 138 EMPAQAPIFGGAAAAAAAPSPVINAPSWFNEERFVGAAREHFMSLQQHWDANEMDKIAEF 197 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V ++ Q R +S+ + +++ + + T+ G ++ + Sbjct: 198 VTPQMLQWLKQ---ERAEIGDAYQSTYIDNLVVQLDGVDDQADKTIATLTFSGVSKTSRF 254 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D+ + W R + P W++ + Sbjct: 255 DQGEA-----------FSESWRMERAQGENQP-WLVAGIRQ 283 >gi|134076790|emb|CAK39845.1| unnamed protein product [Aspergillus niger] Length = 508 Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 55/165 (33%), Gaps = 18/165 (10%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 +V++ + +F + FL E R Y ++D++ +G V ++ + + Sbjct: 344 AENETARVIKKFREMDPNFQMEAFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFHV 402 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYD-KDNL 194 + + ++ + + + +A + + + Q + + K Sbjct: 403 YAALAQQYTTAGLKSDGRILDVRGVDVSHARMLEPGDIPVFVVTCRSQEVHVYKNVKTGE 462 Query: 195 LISSDPEIFGKVIDIWTFVRNIP-----PSNPN---WVLISTKLG 231 L + + V T+ + +NP W LI + Sbjct: 463 LAAGMEDKVQLV----TYAIGLTRIPEDVNNPETRGWRLIELQKA 503 >gi|154287202|ref|XP_001544396.1| hypothetical protein HCAG_01443 [Ajellomyces capsulatus NAm1] gi|150408037|gb|EDN03578.1| hypothetical protein HCAG_01443 [Ajellomyces capsulatus NAm1] Length = 520 Score = 45.3 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 3/92 (3%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137 V++ + F + FL E R Y ++D++ +G V ++ + Y Sbjct: 356 AENETAMVIKKFREMDPSFQIEPFLRELRE-YMLPEVLDAYVKGDVETLKLWLSEAQYNV 414 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 + + ++ I + I +A + Sbjct: 415 YAALAQQYTTAGLKSDGRILDIRHVDISHARM 446 >gi|317030304|ref|XP_001392284.2| TIM23 translocase complex subunit Tim44 [Aspergillus niger CBS 513.88] Length = 514 Score = 45.3 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 55/165 (33%), Gaps = 18/165 (10%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 +V++ + +F + FL E R Y ++D++ +G V ++ + + Sbjct: 350 AENETARVIKKFREMDPNFQMEAFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFHV 408 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYD-KDNL 194 + + ++ + + + +A + + + Q + + K Sbjct: 409 YAALAQQYTTAGLKSDGRILDVRGVDVSHARMLEPGDIPVFVVTCRSQEVHVYKNVKTGE 468 Query: 195 LISSDPEIFGKVIDIWTFVRNIP-----PSNPN---WVLISTKLG 231 L + + V T+ + +NP W LI + Sbjct: 469 LAAGMEDKVQLV----TYAIGLTRIPEDVNNPETRGWRLIELQKA 509 >gi|225559726|gb|EEH08008.1| mitochondrial inner membrane translocase subunit TIM44 [Ajellomyces capsulatus G186AR] Length = 541 Score = 45.3 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 3/92 (3%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137 V++ + F + FL E R Y ++D++ +G V ++ + Y Sbjct: 377 AENETAMVIKKFREMDPSFQIEPFLRELRE-YMLPEVLDAYVKGDVETLKLWLSEAQYNV 435 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 + + ++ I + I +A + Sbjct: 436 YAALAQQYTTAGLKSDGRILDIRHVDISHARM 467 >gi|121593290|ref|YP_985186.1| import inner membrane translocase subunit Tim44 [Acidovorax sp. JS42] gi|120605370|gb|ABM41110.1| import inner membrane translocase, subunit Tim44 [Acidovorax sp. JS42] Length = 335 Score = 45.3 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 11/137 (8%), Positives = 46/137 (33%), Gaps = 16/137 (11%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS-NEKNV--K 153 FD + FL+ A+ ++ + ++ V + ++ + + L+ R+S + Sbjct: 210 GFDTEGFLSAAKRNFTTLQAAWDRSDVATLRSMMTDSMVDEIRTQLNERESHRGDQQPNQ 269 Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213 + ++ + + +++ + ++ ++ ++W Sbjct: 270 TDVIML-EAQLLGIEDLGDGYMASVEFS-----------GMIREEPSAGPSPFREVWNMT 317 Query: 214 RNIPPSNPNWVLISTKL 230 + W++ + Sbjct: 318 KP-KNGASGWLVAGVQA 333 >gi|240276404|gb|EER39916.1| mitochondrial inner membrane translocase subunit TIM44 [Ajellomyces capsulatus H143] gi|325089734|gb|EGC43044.1| mitochondrial inner membrane translocase subunit TIM44 [Ajellomyces capsulatus H88] Length = 541 Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 3/92 (3%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137 V++ + F + FL E R Y ++D++ +G V ++ + Y Sbjct: 377 AENETAMVIKKFREMDPSFQIEPFLRELRE-YMLPEVLDAYVKGDVETLKLWLSEAQYNV 435 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 + + ++ I + I +A + Sbjct: 436 YAALAQQYTTAGLKSDGRILDIRHVDISHARM 467 >gi|322387219|ref|ZP_08060829.1| NinF protein [Streptococcus infantis ATCC 700779] gi|321141748|gb|EFX37243.1| NinF protein [Streptococcus infantis ATCC 700779] Length = 246 Score = 44.9 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 51/144 (35%), Gaps = 12/144 (8%) Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145 + + + +FD F + A+ Y + ++ + + + L +Y + L Sbjct: 53 QAIDRLRYYDPNFDASAFTSWAKEVYIQLQAAWTKKDWNLVRSLESVSLYTQHSAQLEDY 112 Query: 146 KSNEKNVKSSLVGIDDMKIINASIE-ENTVYITIRIVGQFIS-ASYDKDNLLISSDPEIF 203 ++ V +++++I + + + + + + DK +I DP Sbjct: 113 IQSQTTNVLERVYVENVRIKDFNSNPDGNDTLVVILSSTLRDYVIDDKTRKVIEGDP--- 169 Query: 204 GKVIDIWT-----FVRNIPPSNPN 222 D++T F+R N Sbjct: 170 --QQDLFTVYQMNFIRKHGSQTEN 191 >gi|322711640|gb|EFZ03213.1| mitochondrial inner membrane translocase subunit TIM44 [Metarhizium anisopliae ARSEF 23] Length = 538 Score = 44.9 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 48/134 (35%), Gaps = 8/134 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 V++ S+ F + FL E R Y ++D++ +G ++ + + + Sbjct: 374 AENETALVIKKFRSMDPAFQVEPFLQELRE-YILPEVLDAYVKGDTETLKLWLSAAQFSV 432 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193 + ++ I ++ I+ A + + + + I+ Q + + K N Sbjct: 433 YEALTKQYLQAGMKSDGRILDIRNVDILRARMLDP-GEVPVFIITCRTQEVHVYRNAKSN 491 Query: 194 LLISSDPEIFGKVI 207 L + + V Sbjct: 492 ELAAGMEDKVQLVT 505 >gi|293399808|ref|ZP_06643954.1| conserved hypothetical protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306208|gb|EFE47451.1| conserved hypothetical protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 249 Score = 44.9 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 55/138 (39%), Gaps = 16/138 (11%) Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL--- 142 K++++I + +D + A+ +++ + ++ + + +++ L Sbjct: 77 KLLKEIDDLDAIWDEDHIYERVEEIFYAVQNAWTTKSLEELQPYLSDALMENWKTKLDWM 136 Query: 143 STRKSNE-----KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS-YDKDNLLI 196 R+ + + S+VGI D I++ + I G+ I + ++ D L+ Sbjct: 137 DIRRERNILENIQLLSRSIVGIYDA------IDDRKDMVWFYIEGKMIDYTIHEDDGSLL 190 Query: 197 SSDPEIFGKVIDIWTFVR 214 D + ++ W +R Sbjct: 191 DGDKQAHS-FVEFWKLIR 207 >gi|309799759|ref|ZP_07693972.1| putative transporter [Streptococcus infantis SK1302] gi|308116608|gb|EFO54071.1| putative transporter [Streptococcus infantis SK1302] Length = 305 Score = 44.9 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 18/143 (12%), Positives = 48/143 (33%), Gaps = 12/143 (8%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 + + +FD F + + Y + ++ + + + L + +Y + L Sbjct: 113 AVSRVKHGDPNFDADTFASWVKEVYIQLQAAWTKKDWNLVRSLESTSLYSQHSTQLEDHI 172 Query: 147 SNEKNVKSSLVGIDDMKIIN-ASIEENTVYITIRIVGQFIS-ASYDKDNLLISSDPEIFG 204 + V +++++I + + + + + D+ +I DP Sbjct: 173 RAKTTNVLEKVYVENIRIKDFYENPDGNDTLVVILSSTLRDYIIEDQSKRVIEGDP---- 228 Query: 205 KVIDIWT-----FVRNIPPSNPN 222 D++T F+R N Sbjct: 229 -QEDLFTVYQMNFIRKHGSQTEN 250 >gi|302884408|ref|XP_003041100.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256721996|gb|EEU35387.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 504 Score = 44.9 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 53/147 (36%), Gaps = 9/147 (6%) Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVH 124 + D I F V++ ++ F + FL E R Y ++D++ +G+ Sbjct: 328 ARSITDRIAGFFAE-NETAMVIKKFRAMDPSFQVEPFLQELRE-YILPEVLDAYVKGETE 385 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV--- 181 ++ + + Y + ++ I ++ I+ A + + + + I+ Sbjct: 386 TLKLWLSAAQYSVYEALTKQYLQAGMKSDGKILDIRNVDILRARMLDP-GEVPVFIITCR 444 Query: 182 GQFISASYD-KDNLLISSDPEIFGKVI 207 Q + + K N L + + V Sbjct: 445 TQEVHVYRNAKTNELAAGMEDKVQLVT 471 >gi|46111759|ref|XP_382937.1| hypothetical protein FG02761.1 [Gibberella zeae PH-1] Length = 502 Score = 44.9 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 8/134 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 V++ S+ F + FL E R Y ++D++ +G+ ++ + + Y Sbjct: 338 AENETAMVIKKFRSMDPGFQTEPFLQELRE-YILPEVLDAYVKGETETLKLWLSAAQYSV 396 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193 + ++ I ++ I+ A + + + + IV Q + + K N Sbjct: 397 YEALTKQYLQAGMKSDGKILDIRNVDILRARMLDP-GEVPVFIVTCRTQEVHVYRNAKTN 455 Query: 194 LLISSDPEIFGKVI 207 L + + V Sbjct: 456 ELAAGMEDKVQLVT 469 >gi|324518944|gb|ADY47245.1| 39S ribosomal protein L45 [Ascaris suum] Length = 365 Score = 44.9 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 9/134 (6%) Query: 98 FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST----RKSNEKNVK 153 FDPK F A + Y + + K + + + + E+ Sbjct: 188 FDPKLFGATADSIYVEAHKALMARDKVMLHKYITEHAFVKMWPDVENGSVVWEMVEQKEP 247 Query: 154 SSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWT 211 S +V I ++ + + +T+R+ A YDK LI V++ Sbjct: 248 SRVVAIR---CSDSPYKSGNDIAQLTVRMHTVQKLAIYDKFGRLILGSEVEPKAVVEYVV 304 Query: 212 FVRNIPPSNPNWVL 225 F +I + W L Sbjct: 305 FENHIASLDGAWRL 318 >gi|298706514|emb|CBJ29484.1| conserved unknown protein [Ectocarpus siliculosus] Length = 246 Score = 44.9 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 44/153 (28%), Gaps = 13/153 (8%) Query: 91 IVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNE- 149 I DF F A ++ ++ +G A+ L +Y + + KS Sbjct: 70 IQKHVPDFHVSKFPPVANQIFKDFFEAHRKGDTRALAGLTTEELYASLKGEIKSSKSRGA 129 Query: 150 KNVKSSLVGIDDMKII---------NASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + LV + + + S +E +T R+ + D + + Sbjct: 130 QRAAFRLVDFKEPTTVLQMRVDRKKHISPKEGWGQVTCRLCSERQLLVVDAKGNEVEAKA 189 Query: 201 EIFGKVID---IWTFVRNIPPSNPNWVLISTKL 230 + + F S W L + Sbjct: 190 DEDATTAQNVTVGVFEAFFGDSAGRWRLALVQE 222 >gi|116053679|ref|YP_794006.1| hypothetical protein PA14_72930 [Pseudomonas aeruginosa UCBPP-PA14] gi|296392393|ref|ZP_06881868.1| hypothetical protein PaerPAb_29757 [Pseudomonas aeruginosa PAb1] gi|115588900|gb|ABJ14915.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 285 Score = 44.9 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 23/221 (10%), Positives = 68/221 (30%), Gaps = 34/221 (15%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 ILL A + F+ + ++ ++ + +R+ + G Sbjct: 98 MLDILLIALVA-FIAFRFIAA--RR--RQQNQGQPAMAGHAPMQREMPAQAPIFGGATAA 152 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + + + + F+ + F+ AR + ++ + ++ I + Sbjct: 153 AAVAPSPVINAPSW--------------FNEERFVGAAREHFMSLQQHWDANEMDKIAEF 198 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V ++ Q R +S+ + +++ + + T+ G ++ + Sbjct: 199 VTPQMLQWLKQ---ERAEIGDAYQSTYIDNLVVQLDGVDDQADKTIATLTFSGVSKTSRF 255 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D+ + W R + P W++ + Sbjct: 256 DQGEA-----------FSESWRMERAQGENQP-WLVAGIRQ 284 >gi|324518594|gb|ADY47149.1| 39S ribosomal protein L45 [Ascaris suum] Length = 373 Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 9/134 (6%) Query: 98 FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST----RKSNEKNVK 153 FDPK F A + Y + + K + + + + E+ Sbjct: 188 FDPKLFGATADSIYVEAHKALMARDKVMLHKYITEHAFVKMWPDVENGSVVWEMVEQKEP 247 Query: 154 SSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWT 211 S +V I ++ + + +T+R+ A YDK LI V++ Sbjct: 248 SRVVAIR---CSDSPYKSGNDIAQLTVRMHTVQKLAIYDKFGRLILGSEVEPKAVVEYVV 304 Query: 212 FVRNIPPSNPNWVL 225 F +I + W L Sbjct: 305 FENHIASLDGAWRL 318 >gi|226945262|ref|YP_002800335.1| hypothetical protein Avin_31970 [Azotobacter vinelandii DJ] gi|226720189|gb|ACO79360.1| conserved hypothetical protein [Azotobacter vinelandii DJ] Length = 104 Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 37/92 (40%), Gaps = 8/92 (8%) Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN--ASIEENTVYITIRIVGQ 183 + +L+D Y F +L+ R ++ + GI +++ + + I V + Sbjct: 13 LRELLDDDSYAAFQKTLAERLDAGDVIEGT-GGIRKVRVASKGHGKRGGSRVIYYHFVSE 71 Query: 184 -----FISASYDKDNLLISSDPEIFGKVIDIW 210 + ++ + L + + + ++I+ W Sbjct: 72 SQIALLLIYPKNEKDDLTADERKALKRIIETW 103 >gi|255940336|ref|XP_002560937.1| Pc16g06000 [Penicillium chrysogenum Wisconsin 54-1255] gi|211585560|emb|CAP93270.1| Pc16g06000 [Penicillium chrysogenum Wisconsin 54-1255] Length = 506 Score = 44.5 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 54/165 (32%), Gaps = 18/165 (10%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137 V++ + +F + FL E R+ Y ++D++ +G V ++ + + Sbjct: 342 AENETAMVIKKFREIDPNFQMEPFLREMRD-YMLPEVLDAYVKGDVETLKLWLSDAQFHV 400 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYD-KDNL 194 + + ++ I + I +A I + + Q I K Sbjct: 401 YAALAKQYTTAGLKSDGRILDIRGVDISHARILDPGDIPVFVVTCRTQEIHVYRKIKTGE 460 Query: 195 LISSDPEIFGKVIDIWTFVRNIP-----PSNPN---WVLISTKLG 231 L + + V T+ + +NP W LI + Sbjct: 461 LAAGTDDKVQLV----TYAIGLTRIPDEVNNPETRGWRLIELQKA 501 >gi|148667637|gb|EDL00054.1| mCG113908 [Mus musculus] Length = 295 Score = 44.5 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 16/122 (13%) Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87 R +LG+ E P + R T + +++ I + +N V Sbjct: 77 RSLLGR---VEHPPALA-----SLPASPSRSYSTEEQPQQRQRTRMI--ILGFSNPINWV 126 Query: 88 MRDIVSV------YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 I + +F +F A+ ++ + + K +E+LV V Q + Sbjct: 127 RTRIYAFLIWAYFDKEFSIAEFSEGAKQAFAYVSKLLSQCKFDLLEELVAKEVLQILKEK 186 Query: 142 LS 143 ++ Sbjct: 187 VT 188 >gi|50307591|ref|XP_453775.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49642909|emb|CAH00871.1| KLLA0D16214p [Kluyveromyces lactis] Length = 418 Score = 44.5 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 47/146 (32%), Gaps = 6/146 (4%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137 T +V + F+ +DF R Y I++++ +G +++ Y Sbjct: 253 AETESARVYGQFKMMDPTFNTEDFTKHLRE-YIIPEILEAYVKGDEAVLKQWFSEAPYNV 311 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQFISASYD-KDNL 194 + + E ++ I ++I++A + + + + Q I K Sbjct: 312 YAAQQKQFREQELFADGKILDIRGVEIVSAKLLPPQDIPVLVVGCRAQEIHLYRKAKTGE 371 Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSN 220 + + F R+ + Sbjct: 372 IAAGAESSILMSSYAMVFTRDPETVD 397 >gi|145587094|ref|NP_001074650.1| hypothetical protein LOC68115 precursor [Mus musculus] gi|81896109|sp|Q8BHE8|CB047_MOUSE RecName: Full=Uncharacterized protein C2orf47 homolog, mitochondrial; Flags: Precursor gi|26339158|dbj|BAC33250.1| unnamed protein product [Mus musculus] gi|26347797|dbj|BAC37547.1| unnamed protein product [Mus musculus] gi|48735412|gb|AAH71241.1| RIKEN cDNA 9430016H08 gene [Mus musculus] Length = 291 Score = 44.5 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 16/122 (13%) Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87 R +LG+ E P + R T + +++ I + +N V Sbjct: 73 RSLLGR---VEHPPALA-----SLPASPSRSYSTEEQPQQRQRTRMI--ILGFSNPINWV 122 Query: 88 MRDIVSV------YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 I + +F +F A+ ++ + + K +E+LV V Q + Sbjct: 123 RTRIYAFLIWAYFDKEFSIAEFSEGAKQAFAYVSKLLSQCKFDLLEELVAKEVLQILKEK 182 Query: 142 LS 143 ++ Sbjct: 183 VT 184 >gi|332528579|ref|ZP_08404561.1| import inner membrane translocase, subunit [Hylemonella gracilis ATCC 19624] gi|332041895|gb|EGI78239.1| import inner membrane translocase, subunit [Hylemonella gracilis ATCC 19624] Length = 247 Score = 44.1 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 12/138 (8%), Positives = 48/138 (34%), Gaps = 19/138 (13%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK--SNEKNVKS 154 FD + FL A++++ + ++ + + + ++ + + + L+ R+ S+ + + Sbjct: 123 GFDVESFLKVAKSNFIHLQAAWDKADMVTLRSMMTDEMLAEISAQLAERERLSSGEPNLT 182 Query: 155 SLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW--TF 212 + + +++ ++ ++ ++W T Sbjct: 183 EVQMLQ-AQLLGIEDLGGEYMASVEFS-----------GMVREDRHSGPSPFREVWNMTK 230 Query: 213 VRNIPPSNPNWVLISTKL 230 R+ W++ + Sbjct: 231 PRD-GSRG--WLVAGVQA 245 >gi|324516912|gb|ADY46671.1| 39S ribosomal protein L45 [Ascaris suum] gi|324517061|gb|ADY46715.1| 39S ribosomal protein L45 [Ascaris suum] gi|324517081|gb|ADY46721.1| 39S ribosomal protein L45 [Ascaris suum] Length = 379 Score = 44.1 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 9/134 (6%) Query: 98 FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST----RKSNEKNVK 153 FDPK F A + Y + + K + + + + E+ Sbjct: 188 FDPKLFGATADSIYVEAHKALMARDKVMLHKYITEHAFVKMWPDVENGSVVWEMVEQKEP 247 Query: 154 SSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWT 211 S +V I ++ + + +T+R+ A YDK LI V++ Sbjct: 248 SRVVAIR---CSDSPYKSGNDIAQLTVRMHTVQKLAIYDKFGRLILGSEVEPKAVVEYVV 304 Query: 212 FVRNIPPSNPNWVL 225 F +I + W L Sbjct: 305 FENHIASLDGAWRL 318 >gi|303324399|ref|XP_003072187.1| Tim44-like domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240111897|gb|EER30042.1| Tim44-like domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|320037223|gb|EFW19161.1| mitochondrial import inner membrane translocase subunit TIM44 [Coccidioides posadasii str. Silveira] Length = 533 Score = 44.1 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 8/134 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 V++ + +F + FL E R Y ++D++ +G ++ + + Sbjct: 369 AENETAMVIKKFRQMDPNFQIEPFLREMRE-YILPEVLDAYVKGDAETLKLWLSDAQFHV 427 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193 + + ++ I + I +A + E I + IV Q + + K N Sbjct: 428 YAALAKQYTTAGLKSDGRILDIRHVDISHARMLEP-GDIPVFIVTCRTQEVHVYRNAKTN 486 Query: 194 LLISSDPEIFGKVI 207 L + + V Sbjct: 487 ELAAGMEDKVQLVT 500 >gi|119173698|ref|XP_001239255.1| hypothetical protein CIMG_10277 [Coccidioides immitis RS] Length = 533 Score = 44.1 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 8/134 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 V++ + +F + FL E R Y ++D++ +G ++ + + Sbjct: 369 AENETAMVIKKFRQMDPNFQIEPFLREMRE-YILPEVLDAYVKGDAETLKLWLSDAQFHV 427 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV---GQFISASYD-KDN 193 + + ++ I + I +A + E I + IV Q + + K N Sbjct: 428 YAALAKQYTTAGLKSDGRILDIRHVDISHARMLEP-GDIPVFIVTCRTQEVHVYRNAKTN 486 Query: 194 LLISSDPEIFGKVI 207 L + + V Sbjct: 487 ELAAGMEDKVQLVT 500 >gi|307703104|ref|ZP_07640051.1| hypothetical protein SMSK23_0938 [Streptococcus oralis ATCC 35037] gi|307623497|gb|EFO02487.1| hypothetical protein SMSK23_0938 [Streptococcus oralis ATCC 35037] Length = 234 Score = 44.1 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 49/139 (35%), Gaps = 12/139 (8%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 + + +FD F++ + Y + ++ E +++ L + +Y + L Sbjct: 42 AISRVKYGDPNFDANAFISWVKEVYLKLQVAWTEKNWNSVRALESTSLYSQHSTQLEDHI 101 Query: 147 SNEKNVKSSLVGIDDMKIIN-ASIEENTVYITIRIVGQFISASYDKDN-LLISSDPEIFG 204 + V I++++I + + + + D + +I DP+ Sbjct: 102 RAKTTNVLEKVCIENVRIKEFIENPDGNDTLVVILSSTLRDYVIDDETRRVIEGDPK--- 158 Query: 205 KVIDIWT-----FVRNIPP 218 D++T F+R Sbjct: 159 --KDLFTVYQLNFIRQHGS 175 >gi|306828965|ref|ZP_07462157.1| NinF protein [Streptococcus mitis ATCC 6249] gi|304429143|gb|EFM32231.1| NinF protein [Streptococcus mitis ATCC 6249] Length = 238 Score = 44.1 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 49/139 (35%), Gaps = 12/139 (8%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 + + +FD F++ + Y + ++ E +++ L + +Y + L Sbjct: 46 AISRVKYGDPNFDANAFISWVKEVYLKLQVAWTEKNWNSVRALESTSLYSQHSTQLEDHI 105 Query: 147 SNEKNVKSSLVGIDDMKIIN-ASIEENTVYITIRIVGQFISASYDKDN-LLISSDPEIFG 204 + V I++++I + + + + D + +I DP+ Sbjct: 106 RAKTTNVLEKVCIENVRIKEFIENPDGNDTLVVILSSTLRDYVIDDETRRVIEGDPK--- 162 Query: 205 KVIDIWT-----FVRNIPP 218 D++T F+R Sbjct: 163 --KDLFTVYQLNFIRQHGS 179 >gi|293364855|ref|ZP_06611572.1| hypothetical protein HMPREF8579_0701 [Streptococcus oralis ATCC 35037] gi|291316305|gb|EFE56741.1| hypothetical protein HMPREF8579_0701 [Streptococcus oralis ATCC 35037] Length = 318 Score = 44.1 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 49/139 (35%), Gaps = 12/139 (8%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 + + +FD F++ + Y + ++ E +++ L + +Y + L Sbjct: 126 AISRVKYGDPNFDANAFISWVKEVYLKLQVAWTEKNWNSVRALESTSLYSQHSTQLEDHI 185 Query: 147 SNEKNVKSSLVGIDDMKIIN-ASIEENTVYITIRIVGQFISASYDKDN-LLISSDPEIFG 204 + V I++++I + + + + D + +I DP+ Sbjct: 186 RAKTTNVLEKVCIENVRIKEFIENPDGNDTLVVILSSTLRDYVIDDETRRVIEGDPK--- 242 Query: 205 KVIDIWT-----FVRNIPP 218 D++T F+R Sbjct: 243 --KDLFTVYQLNFIRQHGS 259 >gi|224823518|ref|ZP_03696627.1| conserved hypothetical protein [Lutiella nitroferrum 2002] gi|224603973|gb|EEG10147.1| conserved hypothetical protein [Lutiella nitroferrum 2002] Length = 302 Score = 44.1 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 18/194 (9%), Positives = 54/194 (27%), Gaps = 19/194 (9%) Query: 37 NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT 96 + + + + + S P + + Sbjct: 127 FRRKAGNPAGQLPQAAGVPNGMAQEAARFEPIPKIGSGFGTAPSYGGAPMAASSLARLPD 186 Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 + +FL +A+ ++ + + I K + +++ ++ + Sbjct: 187 GTETPNFLRQAKATFLHLQSLNTPDSLEEIRKYLTPDLFEALRADIAGNDDVADFPQL-- 244 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 D ++I A E ++R G +S + + + W +V++ Sbjct: 245 ----DCQLIEAVEEGGRYIASVRFSGS-VSETVNA----------AAVPFGETWHYVKD- 288 Query: 217 PPSNPNWVLISTKL 230 + W+L + Sbjct: 289 -KNGSRWLLAGIQQ 301 >gi|224086853|ref|XP_002186709.1| PREDICTED: hypothetical protein, partial [Taeniopygia guttata] Length = 182 Score = 44.1 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 15/117 (12%) Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV-GIDDMKIINASIEENT 173 +F + + LV R Y D R + K ++ V ++ ++++ E Sbjct: 37 QLAFNK---QKLHSLVTERCYPDMV-----RGNRYKTIRWRFVESLEPPRVVHVRCEGIL 88 Query: 174 ------VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 +T+R+ + I A YD+ L+ EI V++ F R + W Sbjct: 89 NRGNLYGQVTVRMHSRQILAIYDRFGRLMYGGEEIPKDVLEYVVFERYLVNPYGTWR 145 >gi|327404559|ref|YP_004345397.1| hypothetical protein Fluta_2575 [Fluviicola taffensis DSM 16823] gi|327320067|gb|AEA44559.1| hypothetical protein Fluta_2575 [Fluviicola taffensis DSM 16823] Length = 483 Score = 44.1 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 9/112 (8%) Query: 105 NEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164 + S+ A+ ++ E + + K + VYQ F K ++ S V I D+ + Sbjct: 128 EKVSTSFMALQAAWEEQDLSKVRKWMSDGVYQRFTAQFIMMKQLTQSNTLSNVRIKDVSV 187 Query: 165 INASIEE--NTVYITIRIVGQ--FISASYDKDNLLISSDPEIFGKVIDIWTF 212 ++ + + I+I FIS Y + N D + +IWTF Sbjct: 188 MDIRTDGEYQSADISITFSMDDRFISEKYPELNESYKGDSD-----TEIWTF 234 >gi|45187755|ref|NP_983978.1| ADL118Cp [Ashbya gossypii ATCC 10895] gi|44982516|gb|AAS51802.1| ADL118Cp [Ashbya gossypii ATCC 10895] Length = 418 Score = 43.7 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 43/129 (33%), Gaps = 6/129 (4%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA--IVDSFFEGKVHAIEKLVDSRVYQD 137 T +V + F+ ++F R Y +++++ +G +++ Y Sbjct: 253 AETESARVFAQFKLLDPTFNTEEFTKHLRE-YIIPEVLEAYVKGDEQVLKQWFSEAPYNV 311 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQFISASYDK-DNL 194 ++ + E ++ I ++II+A + + I + Q I Sbjct: 312 YSAQQKQIRQQELFADGRILDIRGVEIISAKLLPPQDVPAIVVGCRAQEIHLFRKATTGE 371 Query: 195 LISSDPEIF 203 + + Sbjct: 372 IAAGHESNI 380 >gi|242767716|ref|XP_002341423.1| mitochondrial inner membrane translocase subunit TIM44, putative [Talaromyces stipitatus ATCC 10500] gi|218724619|gb|EED24036.1| mitochondrial inner membrane translocase subunit TIM44, putative [Talaromyces stipitatus ATCC 10500] Length = 507 Score = 43.7 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 55/165 (33%), Gaps = 6/165 (3%) Query: 48 KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107 + +FS +D ++ F +V++ + F + FL E Sbjct: 311 QRLFSLKDTYNESENPLISTARSISDRVAGFFAENETARVIKKFREMDPSFQLEPFLREM 370 Query: 108 RNSY--EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165 R Y ++D++ +G + ++ + + ++ + ++ I + I Sbjct: 371 RE-YILPEVLDAYVKGDIETLKLWLSDAQFSVYSALAQQYTTLGMKSDGRILDIRGVDIA 429 Query: 166 NASIE--ENTVYITIRIVGQFISASYD-KDNLLISSDPEIFGKVI 207 NA + + + Q + + K N L + + V Sbjct: 430 NARMLEPGDIPVFVVTCRTQEVHVYRNAKTNELAAGMEDRVQLVT 474 >gi|115391699|ref|XP_001213354.1| hypothetical protein ATEG_04176 [Aspergillus terreus NIH2624] gi|114194278|gb|EAU35978.1| hypothetical protein ATEG_04176 [Aspergillus terreus NIH2624] Length = 501 Score = 43.7 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 54/165 (32%), Gaps = 18/165 (10%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 V++ + +F + FL E R Y ++D++ +G V ++ + + Sbjct: 337 AENETAMVIKKFREMDPNFQMESFLREMRE-YILPEVLDAYVKGDVETLKLWLSDAQFHV 395 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISASYD-KDNL 194 + + ++ I + + +A + + + Q + + K Sbjct: 396 YAALAQQYTTAGLKSDGRILDIRGVDVSHARMLEPGDIPVFVVTCRTQEVHVYKNTKTGE 455 Query: 195 LISSDPEIFGKVIDIWTFVRNIP-----PSNPN---WVLISTKLG 231 L + + V T+ + +NP W LI + Sbjct: 456 LAAGMEDKVQLV----TYAIGLTRIPEDVNNPETRGWRLIELQKA 496 >gi|312078188|ref|XP_003141630.1| ribosomal protein L45 [Loa loa] gi|307763207|gb|EFO22441.1| ribosomal protein L45 [Loa loa] Length = 388 Score = 43.7 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 7/145 (4%) Query: 87 VMRDIVSV--YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST 144 M+ I + +F K F A Y + A++K + + + Sbjct: 197 GMKRIRKRKGFENFSVKTFPATADEIYIEAHRALMTRDKTALQKYITEAAFGKMWPDVEN 256 Query: 145 ----RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + + S +V + + S + I +R+ A YD+ LI Sbjct: 257 GSVIWELIKHIEPSRVVSVRCADFPHQS-GNDIAQIIVRMYTMQKIALYDRFGRLILGTE 315 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225 + V++ F +I + W L Sbjct: 316 QEAKPVLEYVVFENHIASFDGIWRL 340 >gi|260219921|emb|CBA26937.1| hypothetical protein Csp_G39130 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 263 Score = 43.3 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 30/74 (40%), Gaps = 2/74 (2%) Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151 ++ DFD F A+ ++ + ++ G + I + ++ + + R++ Sbjct: 183 AAIPADFDRAGFERNAKVNFIRLQAAYDAGNLDDIREFTTPEMFAEIKLDFAEREAV--T 240 Query: 152 VKSSLVGIDDMKII 165 S +V ID + Sbjct: 241 QTSEVVRIDTTVLE 254 >gi|170591877|ref|XP_001900696.1| Tim44-like domain containing protein [Brugia malayi] gi|158591848|gb|EDP30451.1| Tim44-like domain containing protein [Brugia malayi] Length = 389 Score = 42.9 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 7/145 (4%) Query: 87 VMRDIVSV--YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST 144 ++ I + +F K F A Y + A++K + + + Sbjct: 197 GIKRIRKRKGFENFSIKTFPATADEIYVEAHKALMTRDKIALQKYITETAFGKMWPDVEN 256 Query: 145 ----RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + + S +V + + S + I +R+ A YD+ LI Sbjct: 257 GSVVWELMKHIELSRVVSVRCADFPHQS-GNDIAQIIVRMHTMQKIALYDRFGRLILGTE 315 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225 V++ F +I + W L Sbjct: 316 HEAKPVLEYVVFENHIASFDGVWRL 340 >gi|212542915|ref|XP_002151612.1| mitochondrial inner membrane translocase subunit TIM44, putative [Penicillium marneffei ATCC 18224] gi|210066519|gb|EEA20612.1| mitochondrial inner membrane translocase subunit TIM44, putative [Penicillium marneffei ATCC 18224] Length = 509 Score = 42.9 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 57/167 (34%), Gaps = 10/167 (5%) Query: 48 KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107 + +FS +D ++ F +V++ + F + FL E Sbjct: 313 QRLFSLKDTYNESENPLISTARSISDRVAGFFAENETARVIKKFREMDPSFQLEPFLREM 372 Query: 108 RNSY--EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165 R Y ++D++ +G + ++ + + ++ + ++ I + I Sbjct: 373 RE-YILPEVLDAYVKGDIETLKLWLSDAQFSVYSALAQQYTTLGMKSDGRILDIRGVDIA 431 Query: 166 NASI----EENTVYITIRIVGQFISASYD-KDNLLISSDPEIFGKVI 207 NA + + IT R Q + + K N L + + V Sbjct: 432 NARMLEPGDIPVFVITCR--TQEVHVYRNSKTNELAAGMEDRVQLVT 476 >gi|183222654|ref|YP_001840650.1| hypothetical protein LEPBI_I3309 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167781076|gb|ABZ99374.1| Hypothetical protein; putative signal peptide [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 874 Score = 42.6 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%) Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 ++ I + FD K F + E V ++ +G + + + V+Q F+ Sbjct: 515 FQSILSKIQNEDPSFDFKQFKEKVIFITETTVSAWDKGNMEPARNFISAAVFQRFS 570 >gi|189912687|ref|YP_001964242.1| hypothetical protein LBF_3195 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777363|gb|ABZ95664.1| Hypothetical protein LBF_3195 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 897 Score = 42.6 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%) Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 ++ I + FD K F + E V ++ +G + + + V+Q F+ Sbjct: 538 FQSILSKIQNEDPSFDFKQFKEKVIFITETTVSAWDKGNMEPARNFISAAVFQRFS 593 >gi|218506347|ref|ZP_03504225.1| putative import inner membrane translocase protein, TIM family [Rhizobium etli Brasil 5] Length = 88 Score = 42.6 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 6/84 (7%) Query: 148 NEKNVKSSLVGIDDMKIINASIEENTVYITI--RIVGQFISASYDKDNLLISSDPEIFGK 205 N + S V + I A E+ Y T+ R D ++S D + Sbjct: 2 NGVRNRVSDVKLLQGDIAEAWREDGQEYATLAMRYSSIDAMVERDS-GRVVSGDDRRPSE 60 Query: 206 VIDIWTFVRNIPPSNPNWVLISTK 229 +IWTFVR W L + + Sbjct: 61 STEIWTFVRKPGGD---WKLAAIQ 81 >gi|126326787|ref|XP_001379521.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 282 Score = 42.6 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 13/113 (11%), Positives = 38/113 (33%), Gaps = 2/113 (1%) Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93 + +P G + +++ + + P+ +V ++ Sbjct: 64 RLSRRRPLLGPGPCPAPPERGYSSAEEQSPPPRQQTKVMYLGLFNPVVWLRTRVYAFLIW 123 Query: 94 V--YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST 144 +F+ +F A+ ++ + + K +E+LV V Q + ++ Sbjct: 124 AYFDQEFNIAEFTVGAKQAFAHVSKLLSQCKFDLLEELVTKEVLQVLKEKVAA 176 >gi|224055461|ref|XP_002191301.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 246 Score = 42.6 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 23/48 (47%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 +F ++F A+ ++ + + K+ +E+LV + V Q + + Sbjct: 90 DQEFSIEEFTRGAKQAFSVVSKLLSQRKLDLLEELVSAEVLQVLKEKI 137 >gi|194217042|ref|XP_001501754.2| PREDICTED: similar to Mitochondrial ribosomal protein L45 [Equus caballus] Length = 304 Score = 42.2 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 66/207 (31%), Gaps = 24/207 (11%) Query: 33 KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK------ 86 +K G P ++ +G + + S L RL K Sbjct: 61 RKAGLVIPPERLERPIHLACTAGIFDAYVPPEGDARVSSLSKEGLARRAERLKKNVASQL 120 Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST-- 144 +R I +F KDF +A+N + + L + + Sbjct: 121 SIRRIRECDANFKIKDFPEKAKNIFIEAHLCLNNSDSDQLHTL---------GNXIPDMV 171 Query: 145 RKSNEKNVKSSLVG------IDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLIS 197 K V+ S V + ++ N + N IT+R+ + A YD+ L+ Sbjct: 172 WDLKYKTVRWSFVESLEPPLVVQVRCSNLLNQGNMYGQITVRMHTRQTLAIYDRFGRLMY 231 Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWV 224 ++ V++ F +++ +W Sbjct: 232 GQEDVPKDVLEYVVFEKHLVNPYGSWR 258 >gi|51948470|ref|NP_001004251.1| hypothetical protein LOC301418 precursor [Rattus norvegicus] gi|81884505|sp|Q6AY04|CB047_RAT RecName: Full=Uncharacterized protein C2orf47 homolog, mitochondrial; Flags: Precursor gi|50925809|gb|AAH79246.1| Similar to hypothetical protein FLJ22555 [Rattus norvegicus] gi|149046128|gb|EDL99021.1| similar to hypothetical protein FLJ22555 [Rattus norvegicus] Length = 291 Score = 42.2 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 21/49 (42%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +F +F A+ ++ + + K +E+LV V Q + ++ Sbjct: 136 DKEFSIAEFSEGAKQAFAYVSKLLSQCKFDLLEELVAKEVLQVLKEKVA 184 >gi|326430800|gb|EGD76370.1| hypothetical protein PTSG_01070 [Salpingoeca sp. ATCC 50818] Length = 267 Score = 42.2 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 74/209 (35%), Gaps = 39/209 (18%) Query: 45 FSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT-------- 96 G+ E + +I++ P T + +R + + Sbjct: 51 AQGRRGGPVAAEPATTLPPLSCQCRAYSTISKQRPDLTPVG-FLRSLRIRWQLYNLRKPW 109 Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL---VDSRVYQDFNDSLSTRKSNEKNVK 153 FDP +F+ AR +E + +G + +++ + + VY++ R+ +++ Sbjct: 110 GFDPDEFIQGARMVWEQLHAIVRDGDMESLQSMKRSMTPLVYRELKH--RAREREDESHH 167 Query: 154 SSLVGIDDMKII----NASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDI 209 ++D II N S +E + I + + ++ + + D+ + + Sbjct: 168 KLPAVLEDAHIINVFGNISSQEIRLSILVEFLARY-TPTEDERDDFWD---------LQQ 217 Query: 210 WTFV------RNIP-PSNP----NWVLIS 227 W F R+ ++P W L S Sbjct: 218 WVFETPILTFRDEGYATDPVQELTWTLTS 246 >gi|331242860|ref|XP_003334075.1| hypothetical protein PGTG_15619 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309313065|gb|EFP89656.1| hypothetical protein PGTG_15619 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 319 Score = 42.2 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 43/153 (28%), Gaps = 41/153 (26%) Query: 107 ARNSYEAIVDS--------FFEGKVHAIEKLVDSRVYQDFNDSLSTR------------- 145 A +Y I+ + F + ++K + + + F R Sbjct: 159 ADEAYGTIILAHQTVTSGSFED---PQVKKFLHPSMVE-FLQEKRERLLRSYSPSHLITW 214 Query: 146 -------------KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 K + + +V + V I +R D+ Sbjct: 215 TKHSPAPEAGKKGKQAQPEKELEIVAMRAAPFDQG---GTVVQIAVRFKSLQSLEIRDER 271 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 LL+ +++ + F + + ++ ++ L Sbjct: 272 GLLVFGSHSKPQPIMEYFVFQKRMGQTDQSFRL 304 >gi|91085613|ref|XP_969487.1| PREDICTED: similar to Juvenile hormone esterase binding protein 29 CG3776-PA [Tribolium castaneum] gi|270010037|gb|EFA06485.1| hypothetical protein TcasGA2_TC009382 [Tribolium castaneum] Length = 260 Score = 41.8 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 5/65 (7%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS-----TRKSNE 149 DF+ DF+ ++ + E + EG V A++ LV + +++ R+ Sbjct: 102 DRDFNLPDFVVGSKKAVEVVSKKIAEGNVKALDGLVTEDILPALQRAVTLMSLSQREQIA 161 Query: 150 KNVKS 154 V+ Sbjct: 162 VEVED 166 >gi|85112444|ref|XP_964347.1| hypothetical protein NCU01983 [Neurospora crassa OR74A] gi|28926125|gb|EAA35111.1| hypothetical protein NCU01983 [Neurospora crassa OR74A] gi|38567071|emb|CAE76368.1| hypothetical protein [Neurospora crassa] Length = 281 Score = 41.8 bits (97), Expect = 0.082, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 46/139 (33%), Gaps = 27/139 (19%) Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI-DDMKIIN 166 + + + ++ G +EK+VDS +Y ++ R + LV + +I++ Sbjct: 125 KALHRQMNEAIASGDAEMLEKIVDSYLYVPLAVNIEQRPK-GRTCTWELVRYNKEPRIVS 183 Query: 167 AS---IEENTV----YITIRIVGQFISASYDKDNLLISSDPEIFGKVI----------DI 209 ++ +T+ I + + ++ + V + Sbjct: 184 HKIFPLQGTKDKLLWQVTVSIASRQR-VVEHERGRVVPGSEKELDLVENVVIGTMISNET 242 Query: 210 WTFVRNIPPSNPNWVLIST 228 W + W +IST Sbjct: 243 W-------ATQNAWKIIST 254 >gi|313899741|ref|ZP_07833244.1| conserved hypothetical protein [Clostridium sp. HGF2] gi|312955356|gb|EFR37021.1| conserved hypothetical protein [Clostridium sp. HGF2] Length = 273 Score = 41.8 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 12/110 (10%), Positives = 39/110 (35%), Gaps = 2/110 (1%) Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN 166 + Y + D++ KV ++ + +Y+ + L+ + + + + ++ Sbjct: 138 VEDIYYHVQDAWTNAKVEDLKPYLTEHLYEQWKMRLTWMELRNERNVLDNIKLRRSAVVG 197 Query: 167 AS--IEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVR 214 +++ + + I G I + + I+ ++ W R Sbjct: 198 IQDYRDDSQDFCWLYIEGSMIDYTINSQTQTITEGKRKTSTFVEYWKLQR 247 >gi|302412056|ref|XP_003003861.1| mitochondrial inner membrane translocase subunit TIM44 [Verticillium albo-atrum VaMs.102] gi|261357766|gb|EEY20194.1| mitochondrial inner membrane translocase subunit TIM44 [Verticillium albo-atrum VaMs.102] Length = 544 Score = 41.4 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 10/130 (7%) Query: 85 NKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 +V++ + +F + FL E R Y ++D++ +G V ++ + Y ++ Sbjct: 385 AQVIKKFREMDPNFKMEPFLTELRE-YILPEVLDAYVKGDVPTLKLWLSEAQYSVYDALT 443 Query: 143 STRKSNEKNVKSSLVGIDDMKIINASI----EENTVYITIRIVGQFISASYD-KDNLLIS 197 ++ I + I A + + IT R Q + + K N L + Sbjct: 444 KQYLKAGMKSDGRILDIRHVDIAKARMLEPGDIPVFVITCR--TQEVHVYRNAKTNELAA 501 Query: 198 SDPEIFGKVI 207 + V Sbjct: 502 GMEDKVQLVT 511 >gi|315612608|ref|ZP_07887521.1| NinF protein [Streptococcus sanguinis ATCC 49296] gi|315315589|gb|EFU63628.1| NinF protein [Streptococcus sanguinis ATCC 49296] Length = 241 Score = 41.4 bits (96), Expect = 0.099, Method: Composition-based stats. Identities = 19/140 (13%), Positives = 50/140 (35%), Gaps = 12/140 (8%) Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145 + + + +FD + F + + Y + ++ E +++ L + +Y + L Sbjct: 48 RAISLVKYGDPNFDAEAFTSWVKEVYLKLQVAWTEKNWNSVRALESTSLYSQHSAQLEDH 107 Query: 146 KSNEKNVKSSLVGIDDMKIIN-ASIEENTVYITIRIVGQFISASYDKDN-LLISSDPEIF 203 + V I++++I + + + + D + +I DP+ Sbjct: 108 IRAKTTNVLEKVCIENVRIKEFIENPDGNDTLVVILSSILRDYVIDDETRRVIEGDPK-- 165 Query: 204 GKVIDIWT-----FVRNIPP 218 D++T F+R Sbjct: 166 ---KDLFTVYQLNFIRQHGS 182 >gi|170086684|ref|XP_001874565.1| predicted protein [Laccaria bicolor S238N-H82] gi|164649765|gb|EDR14006.1| predicted protein [Laccaria bicolor S238N-H82] Length = 397 Score = 41.4 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 55/170 (32%), Gaps = 10/170 (5%) Query: 40 PFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFD 99 P S + E +++ + + +E +VMR + + F+ Sbjct: 201 PVLRSLSELRQAYDQSENPVVSSMRSVTQTVGSWFDE-----NETAQVMRMMKVLDPAFN 255 Query: 100 PKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157 + F E R Y +VD++ A++ Y ++ S ++ Sbjct: 256 REGFERELRE-YIVPEVVDAYLSADQEALKAWCGEATYNVLWATMEQYLRQGLISDSKVL 314 Query: 158 GIDDMKIINASIEENTVYI-TIRIVGQFISASYD-KDNLLISSDPEIFGK 205 I + + + I EN + + I Q + + K ++ + Sbjct: 315 DIRQVDVSDGKILENDIPVFVISFATQEVLLFRNAKTGEIMVGADNKVEQ 364 >gi|56477363|ref|YP_158952.1| hypothetical protein ebA3408 [Aromatoleum aromaticum EbN1] gi|56313406|emb|CAI08051.1| hypothetical protein ebA3408 [Aromatoleum aromaticum EbN1] Length = 217 Score = 41.0 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 27/83 (32%), Gaps = 6/83 (7%) Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73 ++F I + +L TG E P S + D + D++++ Sbjct: 111 VVFFVIGAAILYRLYS-----TGGE-PASVAQDASPSTAAVDATLRVVPPSSAPADDIEA 164 Query: 74 INELFPIGTRLNKVMRDIVSVYT 96 ++ P + + ++ Sbjct: 165 VSVAPPPVPAKSSANEEALAAQP 187 >gi|332209708|ref|XP_003253955.1| PREDICTED: uncharacterized protein C2orf47, mitochondrial-like [Nomascus leucogenys] Length = 291 Score = 41.0 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 20/49 (40%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +F +F A+ ++ + + K +E+LV V + ++ Sbjct: 136 DKEFSIAEFSEGAKQAFAHVSKLLSQCKFDLLEELVAKEVLHALKEKVT 184 >gi|118093426|ref|XP_421922.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 248 Score = 41.0 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 3/106 (2%) Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL--DSINELFPIGTRLNKVMRDIVSVYT 96 P G S G+G ++ + N L + TR ++ + + Sbjct: 35 PPLPGPLSALPPARFASSGPQGPEGEGPQRRVVVVRITNPLAWLRTRFYYLLIRLY-FDS 93 Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 +F ++F A+ ++ + + K+ +E LV + V Q + + Sbjct: 94 EFSIEEFTRGAKQAFSVVSQLLSQRKLDLLEGLVSAEVLQMLKEKI 139 >gi|322374848|ref|ZP_08049362.1| hypothetical protein HMPREF0849_00564 [Streptococcus sp. C300] gi|321280348|gb|EFX57387.1| hypothetical protein HMPREF0849_00564 [Streptococcus sp. C300] Length = 318 Score = 41.0 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 49/139 (35%), Gaps = 12/139 (8%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 + + +FD + F + + Y + ++ E +++ L + +Y + L Sbjct: 126 AISRVKYGDPNFDAEAFTSWVKEVYLKLQVAWTEKNWNSVRALESTSLYSQHSTQLEDHI 185 Query: 147 SNEKNVKSSLVGIDDMKIIN-ASIEENTVYITIRIVGQFISASYDKDN-LLISSDPEIFG 204 + V I++++I + + + + D + ++ DP+ Sbjct: 186 RAKTTNVLEKVCIENVRIKEFIENPDGNDTLVVILSSTLRDYVIDDETRRVLEGDPK--- 242 Query: 205 KVIDIWT-----FVRNIPP 218 D++T F+R Sbjct: 243 --KDLFTVYQLNFIRQHGS 259 >gi|306825787|ref|ZP_07459126.1| NinF protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432148|gb|EFM35125.1| NinF protein [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 238 Score = 41.0 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 49/139 (35%), Gaps = 12/139 (8%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 + + +FD + F + + Y + ++ E +++ L + +Y + L Sbjct: 46 AISRVKYGDPNFDAEAFTSWVKEVYLKLQVAWTEKNWNSVRALESTSLYSQHSTQLEDHI 105 Query: 147 SNEKNVKSSLVGIDDMKIIN-ASIEENTVYITIRIVGQFISASYDKDN-LLISSDPEIFG 204 + V I++++I + + + + D + ++ DP+ Sbjct: 106 RAKTTNVLEKVCIENVRIKEFIENPDGNDTLVVILSSTLRDYVIDDETRRVLEGDPK--- 162 Query: 205 KVIDIWT-----FVRNIPP 218 D++T F+R Sbjct: 163 --KDLFTVYQLNFIRQHGS 179 >gi|301760151|ref|XP_002915883.1| PREDICTED: uncharacterized protein C2orf47 homolog, mitochondrial-like [Ailuropoda melanoleuca] gi|281353912|gb|EFB29496.1| hypothetical protein PANDA_003910 [Ailuropoda melanoleuca] Length = 288 Score = 41.0 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 11/117 (9%) Query: 36 GNEKP---FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIV 92 G ++P G + F RG + + + I + +N V I Sbjct: 67 GPQRPLLSPPGLPAAFSAFPAYPRRGYSAEEQPQPRQKTKMI--ILGFSNPINWVRTRIY 124 Query: 93 SV------YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 + +F +F A+ ++ + + K +E+LV V + ++ Sbjct: 125 AFLIWAYFDQEFSIAEFSEGAKQAFAHVSKLLSQCKFDLLEELVAKEVLHVLKEKVT 181 >gi|74005545|ref|XP_545584.2| PREDICTED: similar to CG3776-PA [Canis familiaris] Length = 289 Score = 41.0 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 37/116 (31%), Gaps = 9/116 (7%) Query: 36 GNEKPFSGFFSGKYVFS--KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93 G +P + S D R + + + + + +N V I + Sbjct: 68 GPPRPLLSPPGPRAALSAFPADARRTYSAEEPPQPRQKTKMI-ILGFSNPINWVRTRIYA 126 Query: 94 V------YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +F +F A+ ++ + + K +E+LV V + ++ Sbjct: 127 FLIWAYFDQEFSIAEFSEGAKQAFAHVSKLLSQCKFDLLEELVAKEVLHVLKEKVT 182 >gi|239582772|ref|NP_078796.2| hypothetical protein LOC79568 precursor [Homo sapiens] gi|74730963|sp|Q8WWC4|CB047_HUMAN RecName: Full=Uncharacterized protein C2orf47, mitochondrial; Flags: Precursor gi|17389900|gb|AAH17959.1| Chromosome 2 open reading frame 47 [Homo sapiens] gi|62988776|gb|AAY24163.1| unknown [Homo sapiens] gi|119590601|gb|EAW70195.1| hypothetical protein FLJ22555, isoform CRA_a [Homo sapiens] gi|119590602|gb|EAW70196.1| hypothetical protein FLJ22555, isoform CRA_a [Homo sapiens] gi|312151240|gb|ADQ32132.1| chromosome 2 open reading frame 47 [synthetic construct] Length = 291 Score = 40.6 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 20/49 (40%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +F +F A+ ++ + + K +E+LV V + ++ Sbjct: 136 DKEFSITEFSEGAKQAFAHVSKLLSQCKFDLLEELVAKEVLHALKEKVT 184 >gi|10438983|dbj|BAB15393.1| unnamed protein product [Homo sapiens] Length = 291 Score = 40.6 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 20/49 (40%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +F +F A+ ++ + + K +E+LV V + ++ Sbjct: 136 DKEFSITEFSEGAKQAFAHVSKLLSQCKFDLLEELVAKEVLHALKEKVT 184 >gi|163846374|ref|YP_001634418.1| extracellular solute-binding protein [Chloroflexus aurantiacus J-10-fl] gi|163667663|gb|ABY34029.1| extracellular solute-binding protein family 5 [Chloroflexus aurantiacus J-10-fl] Length = 612 Score = 40.6 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 43/137 (31%), Gaps = 20/137 (14%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRD-ERGIITL 62 M S FLI++ + G++T +P + + + V + + Sbjct: 3 SHMVSRLFLIMIVLLLAA---------CGQQTSQSQPPTLPSAQETVTAGPTVAPQPTAV 53 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVM--RDIVSVYTDFD--PKDFLNEARNSYEAIVDSF 118 + ++ P ++ + I ++ KDF N A I++ Sbjct: 54 PEATAVPASTAVPTAIPPSGGKLTILSWQAITTLNPHLATGVKDF-NGAT----VILEPL 108 Query: 119 FE-GKVHAIEKLVDSRV 134 + + + + + Sbjct: 109 ARYNERDELVPFLAAEI 125 >gi|19353157|gb|AAH24945.1| 9430016H08Rik protein [Mus musculus] Length = 182 Score = 40.6 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 21/49 (42%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +F +F A+ ++ + + K +E+LV V Q + ++ Sbjct: 27 DKEFSIAEFSEGAKQAFAYVSKLLSQCKFDLLEELVAKEVLQILKEKVT 75 >gi|222524140|ref|YP_002568611.1| extracellular solute-binding protein family 5 protein [Chloroflexus sp. Y-400-fl] gi|222448019|gb|ACM52285.1| extracellular solute-binding protein family 5 [Chloroflexus sp. Y-400-fl] Length = 612 Score = 40.6 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 43/137 (31%), Gaps = 20/137 (14%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRD-ERGIITL 62 M S FLI++ + G++T +P + + + V + + Sbjct: 3 SHMVSRLFLIMIVLLLAA---------CGQQTSQSQPPTLPSAQETVTAGPTVAPQPTAV 53 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVM--RDIVSVYTDFD--PKDFLNEARNSYEAIVDSF 118 + ++ P ++ + I ++ KDF N A I++ Sbjct: 54 PEATAVPASTAVPTAIPPSGGKLTILSWQAITTLNPHLATGVKDF-NGAT----VILEPL 108 Query: 119 FE-GKVHAIEKLVDSRV 134 + + + + + Sbjct: 109 ARYNERDELVPFLAAEI 125 >gi|218506541|ref|ZP_03504419.1| hypothetical protein RetlB5_02514 [Rhizobium etli Brasil 5] Length = 22 Score = 40.6 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 7/21 (33%), Positives = 12/21 (57%) Query: 212 FVRNIPPSNPNWVLISTKLGE 232 F R+ +PNW L++T+ Sbjct: 1 FARDTRSRDPNWKLVATESEH 21 >gi|76779894|gb|AAI06212.1| LOC733342 protein [Xenopus laevis] Length = 228 Score = 40.6 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 23/47 (48%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 +F ++F + A+ ++ + + K A++ L+ S + +D + Sbjct: 72 DREFTIEEFTDGAKQAFTLVSKLLSQCKFDALQNLISSELLEDIKEK 118 >gi|224126203|ref|XP_002190248.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 182 Score = 40.6 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 23/47 (48%) Query: 96 TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 +F ++F A+ ++ + + K+ +E+LV + V Q + + Sbjct: 27 QEFSIEEFTRGAKQAFSVVSKLLSQRKLDLLEELVSAEVLQVLKEKI 73 >gi|47937708|gb|AAH72282.1| LOC432279 protein [Xenopus laevis] Length = 199 Score = 40.6 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 24/47 (51%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 +F+ ++F + A+ ++ + + K A++ L+ S + QD + Sbjct: 68 DREFNIEEFTDGAKQAFTLVSKLLSQCKFDALQNLISSELLQDIKEK 114 >gi|281491081|ref|YP_003353061.1| hypothetical protein LLKF_0593 [Lactococcus lactis subsp. lactis KF147] gi|281374839|gb|ADA64359.1| Hypothetical protein LLKF_0593 [Lactococcus lactis subsp. lactis KF147] Length = 243 Score = 40.6 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 12/105 (11%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV---GIDDMKIINASIE 170 + D++ + + A+ + +Y+ L + + V GI K ++ Sbjct: 130 VQDAWDKHDLRALSESYGDNLYEKHEKILQKMSDKGQINHTRSVVLDGITRYK----EVK 185 Query: 171 ENTVYITIRIVG--QFISASYDKDNLLISSDPEIFGKVIDIWTFV 213 +N V + + V +S +I+ + + WTF Sbjct: 186 DNQVEVDLYFVAIDHLVSV---NSGQIIAGNTQERRAFKQRWTFS 227 >gi|118835767|gb|AAI28910.1| LOC733342 protein [Xenopus laevis] Length = 225 Score = 40.6 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 23/47 (48%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 +F ++F + A+ ++ + + K A++ L+ S + +D + Sbjct: 69 DREFTIEEFTDGAKQAFTLVSKLLSQCKFDALQNLISSELLEDIKEK 115 >gi|52545739|emb|CAH56348.1| hypothetical protein [Homo sapiens] Length = 171 Score = 40.6 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 20/49 (40%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +F +F A+ ++ + + K +E+LV V + ++ Sbjct: 16 DKEFSITEFSEGAKQAFAHVSKLLSQCKFDLLEELVAKEVLHALKEKVT 64 >gi|112419450|gb|AAI22493.1| LOC733342 protein [Xenopus laevis] Length = 225 Score = 40.6 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 23/47 (48%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 +F ++F + A+ ++ + + K A++ L+ S + +D + Sbjct: 69 DREFTIEEFTDGAKQAFTLVSKLLSQCKFDALQNLISSELLEDIKEK 115 >gi|238880462|gb|EEQ44100.1| hypothetical protein CAWG_02360 [Candida albicans WO-1] Length = 424 Score = 40.2 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 42/127 (33%), Gaps = 6/127 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 T KV++ + + F DF N Y +VD++ + +++ + Y + Sbjct: 261 TEQAKVVKQLKLMDPSFRLTDFQRTLTN-YIVPEVVDAYIKNDAKVLKEWLSEAPYNVWE 319 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFISASYD-KDNLLI 196 + S ++ I ++I+ + I + Q I K + Sbjct: 320 ANNKQFIQQGLFSDSRVLDIRGVEIVTCKSLQPNDVPVIVVSCRAQEIHLYRKAKTGEIA 379 Query: 197 SSDPEIF 203 + + Sbjct: 380 AGTEDHI 386 >gi|213405048|ref|XP_002173296.1| mitochondrial import inner membrane translocase subunit [Schizosaccharomyces japonicus yFS275] gi|212001343|gb|EEB07003.1| mitochondrial import inner membrane translocase subunit [Schizosaccharomyces japonicus yFS275] Length = 428 Score = 40.2 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 18/159 (11%), Positives = 51/159 (32%), Gaps = 10/159 (6%) Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 ++ I D++ S T ++V+ + F+ + F R E Sbjct: 237 QETEHPILSSVRDMADSISSFWYRMFSETEASQVVSRFKEIDPSFNSEVFQRYLR---EY 293 Query: 114 IV----DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 I+ +++ +G A+ + + + + ++ I + I + + Sbjct: 294 IIPEVSEAYVKGDKEALRTWFSEAPFSVWETTTKEYAKHGVVSAGQVLDIRGVDIASYRM 353 Query: 170 E--ENTVYITIRIVGQFISASYD-KDNLLISSDPEIFGK 205 N + I Q + + K +++ + + Sbjct: 354 LQPNNIPVMVITFRTQEVHLFKNAKSGEVVAGRNDRIQQ 392 >gi|163915247|ref|NP_001106589.1| hypothetical protein LOC100127804 [Xenopus (Silurana) tropicalis] gi|160773565|gb|AAI55415.1| LOC100127804 protein [Xenopus (Silurana) tropicalis] Length = 304 Score = 40.2 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 7/47 (14%), Positives = 23/47 (48%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 +F+ ++F + A+ ++ + + K A++ L+ + +D + Sbjct: 148 DREFNIEEFTDGAKQAFTLVSKLLSQCKFDALQNLISGELLEDIKEK 194 >gi|62825960|gb|AAH94111.1| LOC734150 protein [Xenopus laevis] Length = 177 Score = 40.2 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 23/47 (48%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 +F ++F + A+ ++ + + K A++ L+ S + +D + Sbjct: 21 DREFTIEEFTDGAKQAFTLVSKLLSQCKFDALQNLISSELLEDIKEK 67 >gi|68476333|ref|XP_717816.1| hypothetical protein CaO19.5444 [Candida albicans SC5314] gi|68476522|ref|XP_717722.1| hypothetical protein CaO19.12899 [Candida albicans SC5314] gi|46439447|gb|EAK98765.1| hypothetical protein CaO19.12899 [Candida albicans SC5314] gi|46439548|gb|EAK98865.1| hypothetical protein CaO19.5444 [Candida albicans SC5314] Length = 424 Score = 40.2 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 42/127 (33%), Gaps = 6/127 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 T KV++ + + F DF N Y +VD++ + +++ + Y + Sbjct: 261 TEQAKVVKQLKLMDPSFRLTDFQRTLTN-YIVPEVVDAYIKNDAKVLKEWLSEAPYNVWE 319 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFISASYD-KDNLLI 196 + S ++ I ++I+ + I + Q I K + Sbjct: 320 ANNKQFIQQGLFSDSRVLDIRGVEIVTCKSLQPNDVPVIVVSCRAQEIHLYRKAKTGEIA 379 Query: 197 SSDPEIF 203 + + Sbjct: 380 AGTEDHI 386 >gi|291391992|ref|XP_002712422.1| PREDICTED: juvenile hormone esterase binding protein 29-like [Oryctolagus cuniculus] Length = 292 Score = 40.2 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 20/49 (40%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +F +F A+ ++ + + K +E+LV V + ++ Sbjct: 137 DKEFSIAEFSEGAKQAFAYVSKLLSQCKFDLLEELVAKEVLHVLKEKVT 185 >gi|284044140|ref|YP_003394480.1| import inner membrane translocase subunit Tim44 [Conexibacter woesei DSM 14684] gi|283948361|gb|ADB51105.1| import inner membrane translocase subunit Tim44 [Conexibacter woesei DSM 14684] Length = 462 Score = 40.2 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 11/118 (9%), Positives = 43/118 (36%), Gaps = 6/118 (5%) Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTV 174 ++ + +L+ + +++ L + + ++ ID ++ + + + Sbjct: 144 AWDARDDARLAQLLVPDLLVEWSRRLDDFARKGWHNRVEVLSIDAIEYLGLTNREGDKDD 203 Query: 175 YITIRIVGQFISASYDKDNLLIS--SDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +T+RI + ++ +++ + + WT + W++ S + Sbjct: 204 RVTVRISAKLRDYVELRNGMIMKRNESGSDVVALTEFWTLAK--RADGNGWIVASIES 259 >gi|296205193|ref|XP_002749654.1| PREDICTED: uncharacterized protein C2orf47, mitochondrial-like [Callithrix jacchus] Length = 290 Score = 40.2 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 20/49 (40%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +F +F A+ ++ + + K +E+LV V + ++ Sbjct: 135 DKEFSIAEFSEGAKQAFAHVSKLLSQCKFDLLEELVAKEVLHVLKEKVT 183 >gi|302564776|ref|NP_001180825.1| chromosome 2 open reading frame 47 [Macaca mulatta] Length = 291 Score = 40.2 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 20/49 (40%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +F +F A+ ++ + + K +E+LV V + ++ Sbjct: 136 DKEFSIAEFSEGAKQAFAHVSKLLSQCKFDLLEELVAKEVLHVLKEKVT 184 >gi|331266951|ref|YP_004326581.1| Tim44 domain superfamily protein [Streptococcus oralis Uo5] gi|326683623|emb|CBZ01241.1| Tim44 domain superfamily protein [Streptococcus oralis Uo5] Length = 314 Score = 39.9 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 49/139 (35%), Gaps = 12/139 (8%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 + + +FD + F + + Y + ++ E +++ L + +Y + L Sbjct: 122 AISRVKYGDPNFDAEAFTSWVKEVYLKLQVAWTEKNWNSVRALESTSLYSQHSTQLEDHI 181 Query: 147 SNEKNVKSSLVGIDDMKIIN-ASIEENTVYITIRIVGQFISASYDKDN-LLISSDPEIFG 204 + V I++++I + + + + D + ++ DP+ Sbjct: 182 RAKTTNVLEKVCIENVRIKEFIENPDGNDTLVVILSSILRDYVIDDETRRVLEGDPK--- 238 Query: 205 KVIDIWT-----FVRNIPP 218 D++T F+R Sbjct: 239 --KDLFTVYQLNFIRQHGS 255 >gi|146309531|ref|YP_001189996.1| import inner membrane translocase, subunit Tim44 [Pseudomonas mendocina ymp] gi|145577732|gb|ABP87264.1| import inner membrane translocase, subunit Tim44 [Pseudomonas mendocina ymp] Length = 284 Score = 39.9 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 25/217 (11%), Positives = 68/217 (31%), Gaps = 33/217 (15%) Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73 L+F I F +F L + + + + + Sbjct: 100 LIFGLIAFLLFRFL-----------------AARRAQQQPQAATAGAPYQREMPNASNAP 142 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 G RL +++ F+ ++F+ R + ++ + ++ I + V + Sbjct: 143 AAGSNIFGARLASA-APVINAPAWFNEQNFIAAGREHFMSLQQHWDADEMDKIAEFVTPQ 201 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 + + R +S+ ID++++ +++N + A+ Sbjct: 202 LLEFLKR---ERAELGDGFQST--YIDELQVQLDGVDDN---------AEKTIATLTFSG 247 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + +S + + W R + P W++ + Sbjct: 248 VSKTSRFDQGEPFSESWRLERAQGDNQP-WLIAGIRQ 283 >gi|114052406|ref|NP_001040474.1| juvenile hormone esterase binding protein [Bombyx mori] gi|95103044|gb|ABF51463.1| juvenile hormone esterase binding protein [Bombyx mori] Length = 243 Score = 39.9 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 4/73 (5%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKS 154 +F +F+ ++++ + + + +E LVD ++S + Sbjct: 86 DQEFSLNEFIEASKHAVQIVSGALQNSDFKTLEGLVDKDAINALKTAVSQ----LSVSQR 141 Query: 155 SLVGIDDMKIINA 167 L+ I+ I A Sbjct: 142 QLLAIEKEDIFYA 154 >gi|331230884|ref|XP_003328106.1| mitochondrial import inner membrane translocase subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309307096|gb|EFP83687.1| mitochondrial import inner membrane translocase subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 580 Score = 39.9 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 9/130 (6%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI----VDSFFEGKVHAIEKLVDSRVYQD 137 T KV+R + V F+ FL + R E I VDSF + + A++ + Sbjct: 346 TETAKVIRLVKEVDPAFNYDAFLADLR---EFIIPDFVDSFVDNDLQALKMWTSEAAFNV 402 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASI--EENTVYITIRIVGQFISASYDKDNLL 195 + + + ++ + + I++A + E + + I+ + + Sbjct: 403 TSAPMKMYLQRGLRPANQIIDLKGIDILSAKVLEERDLPVFIVAFKTHEINCYINPAKRV 462 Query: 196 ISSDPEIFGK 205 + + Sbjct: 463 SAKSKSSIEE 472 >gi|112819389|gb|ABI23690.1| juvenile hormone esterase binding protein [Bombyx mori] Length = 243 Score = 39.9 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 7/50 (14%), Positives = 20/50 (40%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST 144 +F +F+ ++++ + + + +E LVD ++S Sbjct: 86 DQEFSLNEFIEASKHAVQIVSGALQNSDFKTLEGLVDKDAINALKTAVSQ 135 >gi|189202656|ref|XP_001937664.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187984763|gb|EDU50251.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 372 Score = 39.9 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 11/110 (10%) Query: 101 KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160 K F A+ YE + +SF G V ++ + ++ R V + G Sbjct: 165 KQFKYIAKRHYEHVYNSFAAGNVRKLKDTCLPPFLRKIQSQIAVR--GGLRVNWKIHGNI 222 Query: 161 DMKIINASIE------ENTV--YITIRIVGQFISASYDKDNLLISSDPEI 202 +I++ +T + +R+ + S + K +S Sbjct: 223 AARIVSHRASPLGESHPDTAYRQLVVRLKSKQ-SITRTKSGRKAASSSST 271 >gi|241952497|ref|XP_002418970.1| import inner membrane translocase subunit, mitochondrial precursor, putative; translocase of the inner mitochondrial membrane component, putative [Candida dubliniensis CD36] gi|223642310|emb|CAX42552.1| import inner membrane translocase subunit, mitochondrial precursor, putative [Candida dubliniensis CD36] Length = 426 Score = 39.9 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 6/127 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 T KV++ + + F DF N Y +VD++ + +++ + Y + Sbjct: 263 TEQAKVVKQLKLMDPSFRLTDFQRTLTN-YIVPEVVDAYIKNDAKVLKEWLSEAPYNVWE 321 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFISASYD-KDNLLI 196 + S ++ I + I+ + I + Q I K + Sbjct: 322 ANNKQFIQQGLFSDSRVLDIRGVDIVTCKSLQPNDVPVIVVSCRAQEIHLYRKAKTGEIA 381 Query: 197 SSDPEIF 203 + + Sbjct: 382 AGTEDHI 388 >gi|195586603|ref|XP_002083063.1| GD11914 [Drosophila simulans] gi|194195072|gb|EDX08648.1| GD11914 [Drosophila simulans] Length = 267 Score = 39.9 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 64/172 (37%), Gaps = 15/172 (8%) Query: 39 KPFSGFFSG-KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSV--- 94 +P S F+ K+D+ +L + + + I + + N + + Sbjct: 45 QPVSRSFASLPQEQDKKDQNARESLNRLPRLMDFPEIVWPSALNSLKNWITIQFIIRPYF 104 Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS-----TRKS-- 147 ++F KDF+ A+ + + + G + +++ LV + + R+ Sbjct: 105 DSEFQLKDFIYGAKQALQVVSSKLMGGDLDSLDNLVSPEAIAELRPVIQKLSMTQRRQLE 164 Query: 148 -NEKNVKSSLVGIDDMKIINA--SIEENTVYITIRI-VGQFISASYDKDNLL 195 E ++ S + +A +++ V IT+ V + +S ++ + Sbjct: 165 IRESDIYLSFPYQVGIMFDDANDKLQKRFVEITMVFHVMRGLSEMRERGEEI 216 >gi|255723518|ref|XP_002546692.1| conserved hypothetical protein [Candida tropicalis MYA-3404] gi|240130566|gb|EER30130.1| conserved hypothetical protein [Candida tropicalis MYA-3404] Length = 432 Score = 39.9 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 42/127 (33%), Gaps = 6/127 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 T KV++ + + F DF N Y +VD++ + +++ + Y + Sbjct: 269 TEQAKVVKQLKLMDPSFRLTDFQRTLTN-YIVPEVVDAYVKNDAAVLKEWLSEAPYNVWE 327 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFISASYD-KDNLLI 196 + S ++ I ++I+ + + + Q I K + Sbjct: 328 ANNKQFIQQGLFSDSRVLDIRGVEIVTCKSLQPNDVPVVVVSCRAQEIHLYRKAKTGEIA 387 Query: 197 SSDPEIF 203 + + Sbjct: 388 AGTEDHI 394 >gi|154249339|ref|YP_001410164.1| signal peptidase I [Fervidobacterium nodosum Rt17-B1] gi|154153275|gb|ABS60507.1| signal peptidase I [Fervidobacterium nodosum Rt17-B1] Length = 295 Score = 39.9 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 37/120 (30%), Gaps = 13/120 (10%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 + L++A + + +L E S + D + + ++ Sbjct: 20 TIITLIYAIVAATII-RLY-------VFETMLVPTPSMVPTINVGDRLFVEKVTYSAREP 71 Query: 70 NLDSINELFPI--GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 + I + R +++R F PK+F + + EG V ++ Sbjct: 72 QIGEIVVFYTPFPDERAQQMLRAFDKFMDSFSPKEFKGSVKYVKRLVAK---EGDVITLK 128 >gi|46129419|ref|XP_389061.1| hypothetical protein FG08885.1 [Gibberella zeae PH-1] Length = 280 Score = 39.5 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 43/141 (30%), Gaps = 18/141 (12%) Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDD----- 161 A+N Y ++ +F G I L + + ++ R++ + V L+ ++ Sbjct: 114 AKNMYMEMLGAFAAGDKTTINNLCLGQFGKKLTAAID-RRNAGERVTFELLSLNKSLLYP 172 Query: 162 -------MKIINASIEENTVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFV 213 I + T I I A Y K + LI ++ Sbjct: 173 RVVAHQVHNINPHDKDNCTEQAVIAIASTQRVAKYKKPSDQLIPGS-TKVQDKLEYVVLS 231 Query: 214 RNIPPS---NPNWVLISTKLG 231 R + + W + T Sbjct: 232 RQVNEKTFQSTPWRIWGTVPA 252 >gi|164656629|ref|XP_001729442.1| hypothetical protein MGL_3477 [Malassezia globosa CBS 7966] gi|159103333|gb|EDP42228.1| hypothetical protein MGL_3477 [Malassezia globosa CBS 7966] Length = 489 Score = 39.5 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 42/130 (32%), Gaps = 4/130 (3%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDF-LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138 +V+R I + F F ++ ++D++ + H + + Y Sbjct: 324 EENETAQVVRAIKQLDPSFTLSGFTIDLREYVVPEVLDAYHTAQRHLLRQWCGEATYNVL 383 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN--TVYITIRIVG-QFISASYDKDNLL 195 +L ++ + +++I+ I E + I + + + K + Sbjct: 384 MATLDPYLQRGYIADGRILDLSNIEIVQGKILETGPMPVLVISFQTQELMYFTDPKTREI 443 Query: 196 ISSDPEIFGK 205 I E + Sbjct: 444 IDGSVEQAIQ 453 >gi|194222446|ref|XP_001917906.1| PREDICTED: similar to Uncharacterized protein C2orf47, mitochondrial [Equus caballus] Length = 322 Score = 39.5 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 7/49 (14%), Positives = 19/49 (38%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +F +F A+ ++ + + K +E+ V V + ++ Sbjct: 167 DREFSIAEFSEGAKQAFAHVSKLLSQCKFDLLEEFVAKEVLHVLKEKVT 215 >gi|71021021|ref|XP_760741.1| hypothetical protein UM04594.1 [Ustilago maydis 521] gi|46100134|gb|EAK85367.1| hypothetical protein UM04594.1 [Ustilago maydis 521] Length = 567 Score = 39.5 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 44/124 (35%), Gaps = 5/124 (4%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE--AIVDSFFEGKVHAIEKLVDSRVYQD 137 +V R + + F + F + R Y ++D++ H + + + Sbjct: 403 EENDFARVTRQMKMLDPSFTMESFQRDLRE-YVVPELIDAYHGAARHLLRQWCGEATFNL 461 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYITIRIVGQFISASYD-KDNLL 195 ++ S L+ + +++I+ A ++ N + + Q + D K + Sbjct: 462 LMATIDPYLSKGYIPHGRLLDLKNVEILQAKILDNNVPVLVVSFTSQELMFFKDPKTAEV 521 Query: 196 ISSD 199 + + Sbjct: 522 KAGN 525 >gi|157115451|ref|XP_001658212.1| hypothetical protein AaeL_AAEL007196 [Aedes aegypti] gi|94469074|gb|ABF18386.1| juvenile hormone esterase-binding protein [Aedes aegypti] gi|108876910|gb|EAT41135.1| conserved hypothetical protein [Aedes aegypti] Length = 284 Score = 39.5 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 61/158 (38%), Gaps = 28/158 (17%) Query: 45 FSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS----------- 93 + + +S + G+G+ L E+ +M+ I + Sbjct: 68 YGQRCSYSTEAPDELPPRGRGRTLPKLMDFPEIIWP-----SIMKSIKNWIMVHFIIRPY 122 Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL-----STRKS- 147 +F +F+ A+ + + + S G++ +++ LVD + D +++ + R Sbjct: 123 FDREFSLPEFVQGAKQALQVVSASLAGGELKSLDGLVDRQTLNDLKNTIGKMSVAQRYDL 182 Query: 148 --NEKNVKSSL---VGIDDMKIINASIEENTVYITIRI 180 ++++ S VG+ + AS ++ V IT+ Sbjct: 183 MVQKEDIYFSFPYQVGVMFDEEDEAS-QKRFVEITMVF 219 >gi|330843779|ref|XP_003293823.1| hypothetical protein DICPUDRAFT_158742 [Dictyostelium purpureum] gi|325075809|gb|EGC29654.1| hypothetical protein DICPUDRAFT_158742 [Dictyostelium purpureum] Length = 268 Score = 39.5 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 58/159 (36%), Gaps = 26/159 (16%) Query: 87 VMRDIVSVYT-DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST- 144 + + ++ + + FL EA + + + +S +G H + +L F + + Sbjct: 110 IKSKLKALDRTRYTKRAFLKEAEDMFIKVNESIADGNKHQLNELSS----IQFGEVVEKK 165 Query: 145 -----RKSN----------EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 R + KN+ + G +++ + +G + Sbjct: 166 SGYLNRNKDLKFKWSCNITGKNLLWTRAGQIKTSAKSSTF---FAQNCVEFIGTQSIQVF 222 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 DK N LIS + + K+ I F RN+ + W + S+ Sbjct: 223 DKKNNLISENKDQPFKLEYI--FERNLASTPSMWRVCSS 259 >gi|302921469|ref|XP_003053289.1| hypothetical protein NECHADRAFT_59411 [Nectria haematococca mpVI 77-13-4] gi|256734229|gb|EEU47576.1| hypothetical protein NECHADRAFT_59411 [Nectria haematococca mpVI 77-13-4] Length = 278 Score = 39.5 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 14/114 (12%) Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI-- 164 A+ Y ++ +F G I L + + ++ R++ + LV + Sbjct: 111 AKVMYTEMLTAFAAGDKATINSLCLGQFAKKLTAAID-RRNPTERTSFELVKFNKTLFYP 169 Query: 165 ------INA----SIEENTVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVI 207 ++A E +T I I ++ Y K LI ++ K+ Sbjct: 170 RVVAHQVHAVNPYDKENSTEQAVIAIASTQRASKYKKSTGELIPGSTKVQEKIE 223 >gi|299068189|emb|CBJ39408.1| conserved exported protein of unknown function [Ralstonia solanacearum CMR15] Length = 235 Score = 39.1 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 15/147 (10%), Positives = 42/147 (28%), Gaps = 21/147 (14%) Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF 98 +P + + ++ + + P+ + ++ R + F Sbjct: 102 EPNQPGTQPASQATPKPAEPGGSVAMQRPPKPVTPAPAEKPVADPIAEIARQDAAKTGYF 161 Query: 99 DPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS--- 155 + A + +G + Q F ++ R+ N Sbjct: 162 LQVGAYDSAEYAERQ------KGNLA----------MQGFEAKVTQREVNGSTKYRVRLG 205 Query: 156 -LVGIDDMKIINASIEENTVYITI-RI 180 +D+M + + ++ + V T+ R Sbjct: 206 PFNSLDEMTAVRSRLQASGVESTVIRF 232 >gi|322709552|gb|EFZ01128.1| hypothetical protein MAA_03724 [Metarhizium anisopliae ARSEF 23] Length = 318 Score = 39.1 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 14/114 (12%), Positives = 40/114 (35%), Gaps = 14/114 (12%) Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV--------- 157 A+ Y ++++F G + K+ + + ++ R+ ++ V+ +V Sbjct: 151 AKAMYREMLEAFAAGDKVTLNKICLGEFAKKLSAAID-RRDPKERVRFEVVKYNKGLFYP 209 Query: 158 GIDDMKIINAS-IEEN--TVYITIRIVG-QFISASYDKDNLLISSDPEIFGKVI 207 + +I + ++ T + I Q S + ++ K+ Sbjct: 210 RLMSHQIHEVNPFDKTMVTEQAVVAIASTQQASKMSAVTGETVPGSLKLQDKIE 263 >gi|116511408|ref|YP_808624.1| hypothetical protein LACR_0635 [Lactococcus lactis subsp. cremoris SK11] gi|116107062|gb|ABJ72202.1| hypothetical protein LACR_0635 [Lactococcus lactis subsp. cremoris SK11] Length = 158 Score = 39.1 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 13/100 (13%), Positives = 36/100 (36%), Gaps = 2/100 (2%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + +++ + + ++ ++Y+ L ++ + + I D I++N Sbjct: 45 VQEAWDKQDLQSLSPFYGDQLYEKHQKVLEKMRNKGQINHTRS-AILDGITRYKEIKDNQ 103 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213 + + V S D +IS + + + W F Sbjct: 104 FEVDLYFVAIDYLVSIDS-GQIISGNNQYRREFKQRWNFS 142 >gi|156358621|ref|XP_001624615.1| predicted protein [Nematostella vectensis] gi|156211406|gb|EDO32515.1| predicted protein [Nematostella vectensis] Length = 289 Score = 38.7 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 5/77 (6%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 + I+ D L + + + K + +I + F+ FL E +E I Sbjct: 211 ESDNIVIRATRVVTDRLTDVFSDVFSQSEMAKTLSEITKIDPQFNKDRFLQECE--FEII 268 Query: 115 ---VDSFFEGKVHAIEK 128 ++ F +GK+ ++ Sbjct: 269 PAVLEGFLQGKLDILKD 285 >gi|149921069|ref|ZP_01909528.1| hypothetical protein PPSIR1_09510 [Plesiocystis pacifica SIR-1] gi|149818073|gb|EDM77530.1| hypothetical protein PPSIR1_09510 [Plesiocystis pacifica SIR-1] Length = 506 Score = 38.7 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 18/133 (13%) Query: 91 IVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEK 150 I +F F + N + + A+ + + ++L+ R Sbjct: 129 IRRHDPNFSAVVFEDFITNLFVRAQQA--RCDAQAL-DALAPYISAPSREALARRAPRGV 185 Query: 151 NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210 + ++G +++I A + E + + F E + D W Sbjct: 186 RLSHVVIG--RVQVIGARVAEGRCVVQVLFEANFSDEV-----------GERTWYIRDRW 232 Query: 211 TFVRN--IPPSNP 221 F R+ + P Sbjct: 233 RFERDAAVTSRPP 245 >gi|194886908|ref|XP_001976708.1| GG23023 [Drosophila erecta] gi|190659895|gb|EDV57108.1| GG23023 [Drosophila erecta] Length = 267 Score = 38.7 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 44/112 (39%), Gaps = 11/112 (9%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS-----TRKS-- 147 +DF K+F+ A+ + + + G + +++ LV + + R+ Sbjct: 105 DSDFQLKEFIYGAKQALQVVSSKLMGGDLDSLDNLVSPEAIAELRPVIQKLSMTQRRQLE 164 Query: 148 -NEKNVKSSLVGIDDMKIINA--SIEENTVYITIRI-VGQFISASYDKDNLL 195 E ++ S + +A +++ V IT+ V + +S ++ + Sbjct: 165 IKESDIYLSFPYQVGIMFDDANDKLQKRFVEITMVFHVMRGLSEMRERGEEI 216 >gi|282917708|ref|ZP_06325459.1| membrane-associated protein tcaA [Staphylococcus aureus subsp. aureus D139] gi|283767445|ref|ZP_06340360.1| membrane-associated protein tcaA [Staphylococcus aureus subsp. aureus H19] gi|282318463|gb|EFB48822.1| membrane-associated protein tcaA [Staphylococcus aureus subsp. aureus D139] gi|283461324|gb|EFC08408.1| membrane-associated protein tcaA [Staphylococcus aureus subsp. aureus H19] gi|283471578|emb|CAQ50789.1| teicoplanin resistance associated membrane protein [Staphylococcus aureus subsp. aureus ST398] Length = 460 Score = 38.7 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F + + + F D + R S SL+ I +II+A + + Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 T+R+V + DK+ L + + Sbjct: 427 TVRLVNENGKQV-DKEYELEQGSQDRLQLIK 456 >gi|110800878|ref|YP_695686.1| hypothetical protein CPF_1240 [Clostridium perfringens ATCC 13124] gi|110675525|gb|ABG84512.1| conserved hypothetical protein [Clostridium perfringens ATCC 13124] Length = 256 Score = 38.7 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 43/110 (39%), Gaps = 3/110 (2%) Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK-IIN 166 S+ I +++ ++ L+ + ++ ++ S V + + I+ Sbjct: 120 EESFPIIQEAWMNRDYSPVKHLMTDNFFDTHTVKMNWMLLKKEKNILSDVELKKVTPILA 179 Query: 167 ASIEEN-TVYITIRIVGQFISASYDKDNL-LISSDPEIFGKVIDIWTFVR 214 +EN +I + + + I + +++N +I D + W F+R Sbjct: 180 VENDENGEDFIWVLLKAKMIDYTINEENNCIIDGDYSTANSFEEFWKFIR 229 >gi|195429503|ref|XP_002062798.1| GK19646 [Drosophila willistoni] gi|194158883|gb|EDW73784.1| GK19646 [Drosophila willistoni] Length = 242 Score = 38.7 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 43/112 (38%), Gaps = 11/112 (9%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS-----TRKSNE 149 ++F KDF+ A+ + + + G++ +++ LV S + + R+ E Sbjct: 80 DSEFQLKDFIYGAKEALQVVSSRLMGGELDSLQNLVSSEAINELKPVIQKLSMTQRRQLE 139 Query: 150 KNVKSSLVGIDDMK---IINA--SIEENTVYITIRI-VGQFISASYDKDNLL 195 + A +++ V IT+ V + +S ++ + + Sbjct: 140 IKQSDIYLSFPYQVGIIFDEANDKLQKRFVEITMVFHVMRGLSEMRERGDEI 191 >gi|195353340|ref|XP_002043163.1| GM11918 [Drosophila sechellia] gi|194127251|gb|EDW49294.1| GM11918 [Drosophila sechellia] Length = 267 Score = 38.7 bits (89), Expect = 0.68, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 66/176 (37%), Gaps = 23/176 (13%) Query: 39 KPFSGFFSG-KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSV--- 94 +P F+ K+D+ +L + + + I + + N + + Sbjct: 45 QPVRRSFASLPQEQDKKDQNARESLNRLPRLMDFPEIVWPSALNSLKNWITIQFIIRPYF 104 Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS-----TRKSNE 149 ++F KDF+ A+ + + + G + +++ LV + + R+ Sbjct: 105 DSEFQLKDFIYGAKQALQVVSSKLMGGDLDSLDNLVSPEAIAELRPVIQKLSMTQRRQL- 163 Query: 150 KNVKSSL-------VGIDDMKIINAS--IEENTVYITIRI-VGQFISASYDKDNLL 195 + +S + VGI +AS +++ V IT+ V + +S ++ + Sbjct: 164 EISESDIYLSFPYQVGI---MFDDASDKLQKRFVEITMVFHVMRGLSEMRERGEEI 216 >gi|74008921|ref|XP_549236.2| PREDICTED: similar to CG3776-PA [Canis familiaris] Length = 220 Score = 38.7 bits (89), Expect = 0.68, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 20/49 (40%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +F DF A+ ++ + + K +E+LV V + ++ Sbjct: 65 DQEFSIADFSEGAKQAFAHVSKLLSQCKFDLLEELVAKEVLHVLKEKVT 113 >gi|254518212|ref|ZP_05130268.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] gi|226911961|gb|EEH97162.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] Length = 266 Score = 38.7 bits (89), Expect = 0.70, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 60/154 (38%), Gaps = 19/154 (12%) Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145 ++++ + ++D + N+ ++ + ++ E ++ + ++Y + R Sbjct: 103 SAIKNLSKMDYNWDYDNIKNDIEEAFYKVQVAWMERNQDLAKEYMSEKLY------IRHR 156 Query: 146 KSNE----KNVKSSLVGIDDMKIINASIEE----NTVYITIRIVGQFISAS-YDKDNLLI 196 E + K+ L I + I ++++ N + + I + I + ++ N +I Sbjct: 157 SKTEWMKVRKEKNILEKIKLVSAIPIALQDKDGTNEDSLWVHIKAKSIDYTIKEETNEII 216 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + + W F++N WVL + Sbjct: 217 EGNKYRITHFEEYWKFIKN----EKRWVLDEIRQ 246 >gi|327260776|ref|XP_003215209.1| PREDICTED: uncharacterized protein C2orf47 homolog, mitochondrial-like [Anolis carolinensis] Length = 257 Score = 38.7 bits (89), Expect = 0.72, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 50/152 (32%), Gaps = 18/152 (11%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN--- 151 +F +F A+ ++ + + K +E+LV + Q + LS N ++ Sbjct: 101 DQEFSIHEFTEGAKQAFAHVSRLIAQCKYDLLEELVSKEMVQILKEKLSLLSENHRSALA 160 Query: 152 VKSSLVGIDDMKIINASIEEN---TVYITIRI----VGQFISASYD--KDNLLISSDPEI 202 + + +++ V I +R + D K ++ D E Sbjct: 161 ADMDEIMYTTAGDVGIYYDDSGRKFVSILMRFWYLTSADLPDETPDGTKVFQVVFGD-EA 219 Query: 203 FGKVIDIWT----FVRNIPPS-NPNWVLISTK 229 + + T F R P+W + + Sbjct: 220 SKETKRLLTANYEFRREFTQGVKPDWTITRIE 251 >gi|262052119|ref|ZP_06024328.1| TcaA protein [Staphylococcus aureus 930918-3] gi|259160020|gb|EEW45055.1| TcaA protein [Staphylococcus aureus 930918-3] Length = 460 Score = 38.7 bits (89), Expect = 0.73, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F + + + F D + R S SL+ I +II+A + + Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPRIIDAEKHGDKITA 426 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 T+R++ + DK+ L + + Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456 >gi|328863140|gb|EGG12240.1| hypothetical protein MELLADRAFT_73983 [Melampsora larici-populina 98AG31] Length = 318 Score = 38.3 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 3/74 (4%) Query: 153 KSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTF 212 + +V + V I +R D+ LL+S E V++ + F Sbjct: 234 EMEIVTMRAAPFDKG---GTVVQIAVRFRTYQSLEVRDECGLLVSGSHESPQLVMEYFVF 290 Query: 213 VRNIPPSNPNWVLI 226 + + N ++L Sbjct: 291 QKRMSMVNQPFLLF 304 >gi|196228513|ref|ZP_03127380.1| serine/threonine protein kinase [Chthoniobacter flavus Ellin428] gi|196227916|gb|EDY22419.1| serine/threonine protein kinase [Chthoniobacter flavus Ellin428] Length = 824 Score = 38.3 bits (88), Expect = 0.80, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 50/157 (31%), Gaps = 20/157 (12%) Query: 26 QLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII----TLGKGKKKDNLDSINELFPIG 81 +LR L ++ G ++ + + + + T + + + + EL G Sbjct: 640 RLRAALARRDGAKERLTLLQRQRLALRGQSGPVPVDDELTAAERELAEAEARVGELQMSG 699 Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 T N + + P+ ++ AR + + F G + Sbjct: 700 TP-NGGLLPVTQSNGHLVPQSVVDSAREALDVAQKRFEAGNIDQ-------------VTC 745 Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 + R+ + ++ VG D + A + + + Sbjct: 746 MKAREQLQW-AEAMFVG-DRLGAAKARRDGARERLEV 780 >gi|332815085|ref|XP_003309438.1| PREDICTED: uncharacterized protein C2orf47, mitochondrial-like [Pan troglodytes] Length = 291 Score = 38.3 bits (88), Expect = 0.92, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 21/49 (42%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +F +F EA+ ++ + + K +E+LV V + ++ Sbjct: 136 DKEFSITEFRREAKQAFAHVSKLLSQCKFDLLEELVAKEVLHALKEKVT 184 >gi|254029410|gb|ACT53403.1| assimilatory nitrate reductase [uncultured bacterium] Length = 219 Score = 37.9 bits (87), Expect = 0.97, Method: Composition-based stats. Identities = 12/99 (12%), Positives = 33/99 (33%), Gaps = 6/99 (6%) Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLN--KVMRDIVSVYTDF 98 + + ++ + + + GT L + +V F Sbjct: 67 LFQRLPKRKKRDPKSLTIVVVDPRATDTAKIADYHLAIAPGTDLAFLHGLARLVIEDNGF 126 Query: 99 DPKDFLNEARN---SYEAIVDSFFEGKVHAIEKLVDSRV 134 D DF++ A +Y I++++ G+ + + + + Sbjct: 127 D-SDFIDAATEGFSAYAQIINAWTPGETANLCGITEQDL 164 >gi|329730366|gb|EGG66756.1| TcaA protein [Staphylococcus aureus subsp. aureus 21193] Length = 460 Score = 37.9 bits (87), Expect = 1.00, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F + + + F D + R S SL+ I +II+A + + Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 T+R++ + DK+ L + + Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456 >gi|329315043|gb|AEB89456.1| Membrane-associated protein tcaA [Staphylococcus aureus subsp. aureus T0131] Length = 460 Score = 37.9 bits (87), Expect = 1.00, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F + + + F D + R S SL+ I +II+A + + Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 T+R++ + DK+ L + + Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456 >gi|323439961|gb|EGA97676.1| bicyclomycin and teicoplanin resistance protein [Staphylococcus aureus O11] gi|323443684|gb|EGB01297.1| bicyclomycin and teicoplanin resistance protein [Staphylococcus aureus O46] Length = 460 Score = 37.9 bits (87), Expect = 1.00, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F + + + F D + R S SL+ I +II+A + + Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 T+R++ + DK+ L + + Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456 >gi|302333989|gb|ADL24182.1| teicoplanin resistance associated membrane protein TcaA protein [Staphylococcus aureus subsp. aureus JKD6159] Length = 460 Score = 37.9 bits (87), Expect = 1.00, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F + + + F D + R S SL+ I +II+A + + Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 T+R++ + DK+ L + + Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456 >gi|298695618|gb|ADI98840.1| bicyclomycin and teicoplanin resistance protein [Staphylococcus aureus subsp. aureus ED133] Length = 460 Score = 37.9 bits (87), Expect = 1.00, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F + + + F D + R S SL+ I +II+A + + Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 T+R++ + DK+ L + + Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456 >gi|262049816|ref|ZP_06022680.1| TcaA protein [Staphylococcus aureus D30] gi|259162123|gb|EEW46701.1| TcaA protein [Staphylococcus aureus D30] Length = 460 Score = 37.9 bits (87), Expect = 1.00, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F + + + F D + R S SL+ I +II+A + + Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 T+R++ + DK+ L + + Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456 >gi|258425101|ref|ZP_05687972.1| teicoplanin resistance protein TcaA [Staphylococcus aureus A9635] gi|257844935|gb|EEV68978.1| teicoplanin resistance protein TcaA [Staphylococcus aureus A9635] Length = 460 Score = 37.9 bits (87), Expect = 1.00, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F + + + F D + R S SL+ I +II+A + + Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 T+R++ + DK+ L + + Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456 >gi|253730027|ref|ZP_04864192.1| teicoplanin resistance protein TcaA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726240|gb|EES94969.1| teicoplanin resistance protein TcaA [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 460 Score = 37.9 bits (87), Expect = 1.00, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F + + + F D + R S SL+ I +II+A + + Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 T+R++ + DK+ L + + Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456 >gi|253314696|ref|ZP_04837909.1| TcaA protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|258407378|ref|ZP_05680521.1| membrane-associated protein TcaA [Staphylococcus aureus A9763] gi|258439686|ref|ZP_05690432.1| membrane-associated protein tcaA [Staphylococcus aureus A9299] gi|258442757|ref|ZP_05691317.1| membrane-associated protein tcaA [Staphylococcus aureus A8115] gi|258446543|ref|ZP_05694698.1| membrane-associated protein tcaA [Staphylococcus aureus A6300] gi|258450340|ref|ZP_05698432.1| membrane-associated protein tcaA [Staphylococcus aureus A6224] gi|258455284|ref|ZP_05703244.1| membrane-associated protein tcaA [Staphylococcus aureus A5937] gi|269203988|ref|YP_003283257.1| tcaA protein [Staphylococcus aureus subsp. aureus ED98] gi|282893802|ref|ZP_06302034.1| membrane-associated protein tcaA [Staphylococcus aureus A8117] gi|282926910|ref|ZP_06334537.1| membrane-associated protein tcaA [Staphylococcus aureus A10102] gi|296275442|ref|ZP_06857949.1| tcaA protein [Staphylococcus aureus subsp. aureus MR1] gi|297244100|ref|ZP_06927990.1| membrane-associated protein tcaA [Staphylococcus aureus A8796] gi|257840890|gb|EEV65341.1| membrane-associated protein TcaA [Staphylococcus aureus A9763] gi|257847462|gb|EEV71464.1| membrane-associated protein tcaA [Staphylococcus aureus A9299] gi|257851878|gb|EEV75812.1| membrane-associated protein tcaA [Staphylococcus aureus A8115] gi|257854611|gb|EEV77559.1| membrane-associated protein tcaA [Staphylococcus aureus A6300] gi|257856432|gb|EEV79341.1| membrane-associated protein tcaA [Staphylococcus aureus A6224] gi|257862495|gb|EEV85263.1| membrane-associated protein tcaA [Staphylococcus aureus A5937] gi|262076278|gb|ACY12251.1| tcaA protein [Staphylococcus aureus subsp. aureus ED98] gi|282591361|gb|EFB96434.1| membrane-associated protein tcaA [Staphylococcus aureus A10102] gi|282763860|gb|EFC03988.1| membrane-associated protein tcaA [Staphylococcus aureus A8117] gi|285818019|gb|ADC38506.1| Teicoplanin resistance associated membrane protein TcaA [Staphylococcus aureus 04-02981] gi|297178878|gb|EFH38123.1| membrane-associated protein tcaA [Staphylococcus aureus A8796] gi|312830703|emb|CBX35545.1| tcaA protein [Staphylococcus aureus subsp. aureus ECT-R 2] Length = 460 Score = 37.9 bits (87), Expect = 1.00, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F + + + F D + R S SL+ I +II+A + + Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 T+R++ + DK+ L + + Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456 >gi|148268793|ref|YP_001247736.1| membrane protein-like protein [Staphylococcus aureus subsp. aureus JH9] gi|150394863|ref|YP_001317538.1| TcaA protein [Staphylococcus aureus subsp. aureus JH1] gi|257794698|ref|ZP_05643677.1| membrane-associated protein tcaA [Staphylococcus aureus A9781] gi|258422294|ref|ZP_05685206.1| membrane-associated protein tcaA [Staphylococcus aureus A9719] gi|295405043|ref|ZP_06814856.1| membrane-associated protein tcaA [Staphylococcus aureus A8819] gi|189029833|sp|A6U483|TCAA_STAA2 RecName: Full=Membrane-associated protein tcaA gi|189029834|sp|A5IVD7|TCAA_STAA9 RecName: Full=Membrane-associated protein tcaA gi|147741862|gb|ABQ50160.1| membrane protein-like protein [Staphylococcus aureus subsp. aureus JH9] gi|149947315|gb|ABR53251.1| TcaA protein [Staphylococcus aureus subsp. aureus JH1] gi|257788670|gb|EEV27010.1| membrane-associated protein tcaA [Staphylococcus aureus A9781] gi|257841725|gb|EEV66162.1| membrane-associated protein tcaA [Staphylococcus aureus A9719] gi|294969988|gb|EFG46006.1| membrane-associated protein tcaA [Staphylococcus aureus A8819] gi|315128722|gb|EFT84723.1| TcaA protein [Staphylococcus aureus subsp. aureus CGS03] gi|329723641|gb|EGG60170.1| TcaA protein [Staphylococcus aureus subsp. aureus 21172] Length = 460 Score = 37.9 bits (87), Expect = 1.00, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F + + + F D + R S SL+ I +II+A + + Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 T+R++ + DK+ L + + Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456 >gi|87161173|ref|YP_494937.1| teicoplanin resistance associated membrane protein TcaA protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88196276|ref|YP_501096.1| hypothetical protein SAOUHSC_02635 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222469|ref|YP_001333291.1| teicoplanin resistance associated protein A [Staphylococcus aureus subsp. aureus str. Newman] gi|161510550|ref|YP_001576209.1| teicoplanin resistance protein TcaA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141289|ref|ZP_03565782.1| teicoplanin resistance protein TcaA [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253734228|ref|ZP_04868393.1| teicoplanin resistance associated membrane protein TcaA protein [Staphylococcus aureus subsp. aureus TCH130] gi|258452629|ref|ZP_05700633.1| teicoplanin resistance associated protein A [Staphylococcus aureus A5948] gi|282925246|ref|ZP_06332905.1| teicoplanin resistance associated membrane protein TcaA [Staphylococcus aureus A9765] gi|284025379|ref|ZP_06379777.1| teicoplanin resistance associated membrane protein TcaA protein [Staphylococcus aureus subsp. aureus 132] gi|294848898|ref|ZP_06789643.1| teicoplanin resistance associated membrane protein TcaA [Staphylococcus aureus A9754] gi|304379548|ref|ZP_07362282.1| Teicoplanin resistance protein TcaA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|122540630|sp|Q2G2I1|TCAA_STAA8 RecName: Full=Membrane-associated protein tcaA gi|123484654|sp|Q2FEE1|TCAA_STAA3 RecName: Full=Membrane-associated protein tcaA gi|189029835|sp|A6QJJ7|TCAA_STAAE RecName: Full=Membrane-associated protein tcaA gi|189029836|sp|A8Z547|TCAA_STAAT RecName: Full=Membrane-associated protein tcaA gi|87127147|gb|ABD21661.1| teicoplanin resistance associated membrane protein TcaA protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203834|gb|ABD31644.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150375269|dbj|BAF68529.1| teicoplanin resistance associated protein A [Staphylococcus aureus subsp. aureus str. Newman] gi|160369359|gb|ABX30330.1| teicoplanin resistance protein TcaA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253727923|gb|EES96652.1| teicoplanin resistance associated membrane protein TcaA protein [Staphylococcus aureus subsp. aureus TCH130] gi|257859701|gb|EEV82545.1| teicoplanin resistance associated protein A [Staphylococcus aureus A5948] gi|269941941|emb|CBI50352.1| teicoplanin resistance associated membraneprotein [Staphylococcus aureus subsp. aureus TW20] gi|282592647|gb|EFB97656.1| teicoplanin resistance associated membrane protein TcaA [Staphylococcus aureus A9765] gi|294824277|gb|EFG40701.1| teicoplanin resistance associated membrane protein TcaA [Staphylococcus aureus A9754] gi|302752227|gb|ADL66404.1| teicoplanin resistance associated membrane protein TcaA protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341893|gb|EFM07798.1| Teicoplanin resistance protein TcaA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198099|gb|EFU28430.1| teicoplanin resistance protein TcaA [Staphylococcus aureus subsp. aureus CGS01] gi|320140102|gb|EFW31961.1| TcaA protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143371|gb|EFW35152.1| TcaA protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329726064|gb|EGG62537.1| TcaA protein [Staphylococcus aureus subsp. aureus 21189] Length = 460 Score = 37.9 bits (87), Expect = 1.00, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F + + + F D + R S SL+ I +II+A + + Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 T+R++ + DK+ L + + Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456 >gi|57650900|ref|YP_187158.1| tcaA protein [Staphylococcus aureus subsp. aureus COL] gi|81693864|sp|Q5HDJ9|TCAA_STAAC RecName: Full=Membrane-associated protein tcaA; AltName: Full=Teicoplanin-associated protein A gi|10946544|gb|AAG23888.1| TcaA [Staphylococcus aureus subsp. aureus COL] gi|57285086|gb|AAW37180.1| tcaA protein [Staphylococcus aureus subsp. aureus COL] Length = 460 Score = 37.9 bits (87), Expect = 1.00, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F + + + F D + R S SL+ I +II+A + + Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 T+R++ + DK+ L + + Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456 >gi|82751951|ref|YP_417692.1| bicyclomycin and teicoplanin resistance protein [Staphylococcus aureus RF122] gi|123549387|sp|Q2YYX9|TCAA_STAAB RecName: Full=Membrane-associated protein tcaA gi|82657482|emb|CAI81924.1| bicyclomycin and teicoplanin resistance protein [Staphylococcus aureus RF122] Length = 460 Score = 37.9 bits (87), Expect = 1.00, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F + + + F D + R S SL+ I +II+A + + Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 T+R++ + DK+ L + + Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456 >gi|49487139|ref|YP_044360.1| teicoplanin resistance associated membrane protein [Staphylococcus aureus subsp. aureus MSSA476] gi|297209826|ref|ZP_06926222.1| teicoplanin resistance protein TcaA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|81648743|sp|Q6G6W4|TCAA_STAAS RecName: Full=Membrane-associated protein tcaA gi|49245582|emb|CAG44060.1| teicoplanin resistance associated membrane protein [Staphylococcus aureus subsp. aureus MSSA476] gi|296885499|gb|EFH24436.1| teicoplanin resistance protein TcaA [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 460 Score = 37.9 bits (87), Expect = 1.00, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F + + + F D + R S SL+ I +II+A + + Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 T+R++ + DK+ L + + Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456 >gi|21284006|ref|NP_647094.1| TcaA protein [Staphylococcus aureus subsp. aureus MW2] gi|300910838|ref|ZP_07128288.1| teicoplanin resistance protein TcaA [Staphylococcus aureus subsp. aureus TCH70] gi|81762078|sp|Q8NV48|TCAA_STAAW RecName: Full=Membrane-associated protein tcaA gi|21205449|dbj|BAB96142.1| TcaA protein [Staphylococcus aureus subsp. aureus MW2] gi|300887818|gb|EFK83013.1| teicoplanin resistance protein TcaA [Staphylococcus aureus subsp. aureus TCH70] Length = 460 Score = 37.9 bits (87), Expect = 1.00, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F + + + F D + R S SL+ I +II+A + + Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 T+R++ + DK+ L + + Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456 >gi|15925346|ref|NP_372880.1| TcaA protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927936|ref|NP_375469.1| TcaA protein [Staphylococcus aureus subsp. aureus N315] gi|156980671|ref|YP_001442930.1| TcaA protein [Staphylococcus aureus subsp. aureus Mu3] gi|255007132|ref|ZP_05145733.2| TcaA protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|81705170|sp|Q7A3X6|TCAA_STAAN RecName: Full=Membrane-associated protein tcaA gi|81781026|sp|Q99RS0|TCAA_STAAM RecName: Full=Membrane-associated protein tcaA gi|189029832|sp|A7X5X6|TCAA_STAA1 RecName: Full=Membrane-associated protein tcaA gi|13702307|dbj|BAB43448.1| TcaA protein [Staphylococcus aureus subsp. aureus N315] gi|14248130|dbj|BAB58518.1| TcaA protein [Staphylococcus aureus subsp. aureus Mu50] gi|156722806|dbj|BAF79223.1| TcaA protein [Staphylococcus aureus subsp. aureus Mu3] Length = 460 Score = 37.9 bits (87), Expect = 1.00, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F + + + F D + R S SL+ I +II+A + + Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 T+R++ + DK+ L + + Sbjct: 427 TVRLINENGKQV-DKEYELEQGSQDRLQLIK 456 >gi|241688874|ref|XP_002411729.1| conserved hypothetical protein [Ixodes scapularis] gi|215504549|gb|EEC14043.1| conserved hypothetical protein [Ixodes scapularis] Length = 270 Score = 37.9 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 14/94 (14%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD----SRV---YQDFNDSLSTRKS 147 ++ +FLN A+ + + G ++E LV S V Y F + R+ Sbjct: 120 DRSYNQTEFLNGAKQALTYVSALVARGDFKSLEGLVASPTISEVQRNYSRFTE--EQRQK 177 Query: 148 NEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 +V+ + + + I +++ R V Sbjct: 178 --LSVELTDIYFCFLYQIGIIMDDRNDQ---RFV 206 >gi|195489883|ref|XP_002092927.1| GE14459 [Drosophila yakuba] gi|194179028|gb|EDW92639.1| GE14459 [Drosophila yakuba] Length = 267 Score = 37.9 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 44/112 (39%), Gaps = 11/112 (9%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS-----TRKS-- 147 ++F K+F+ A+ + + + G + +++ LV + + R+ Sbjct: 105 DSEFQLKEFIYGAKQALQVVSSKLMGGDLDSLDNLVSPEAIAELRPVIQKLSMTQRRQLE 164 Query: 148 -NEKNVKSSLVGIDDMKIINA--SIEENTVYITIRI-VGQFISASYDKDNLL 195 E ++ S + +A +++ V IT+ V + +S ++ + Sbjct: 165 IKESDIYLSFPYQVGIMFDDANDKLQKRFVEITMVFHVMRGLSEMRERGEEI 216 >gi|119945053|ref|YP_942733.1| hypothetical protein Ping_1308 [Psychromonas ingrahamii 37] gi|119863657|gb|ABM03134.1| hypothetical protein Ping_1308 [Psychromonas ingrahamii 37] Length = 561 Score = 37.9 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 13/122 (10%), Positives = 39/122 (31%), Gaps = 10/122 (8%) Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148 I + F + N++ I ++ E + + + + + +K Sbjct: 50 NKIRHLDKHFSTALITSRVENAFYIIKQAWSEQDISYSRAFISDGISESYQIQFEIQKKQ 109 Query: 149 EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208 + K + I + +++ +++ + +I + + I + K D Sbjct: 110 QHRRKIENLIITNSELVGIEADKHFETLHFKITS--------RADYPIE--IKGRNKQTD 159 Query: 209 IW 210 W Sbjct: 160 SW 161 >gi|324523301|gb|ADY48225.1| 39S ribosomal protein L45 [Ascaris suum] Length = 171 Score = 37.9 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 21/55 (38%) Query: 171 ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 + +T+R+ A YDK LI V++ F +I + W L Sbjct: 56 NDIAQLTVRMHTVQKLAIYDKFGRLILGSEVEPKAVVEYVVFENHIASLDGAWRL 110 >gi|196001951|ref|XP_002110843.1| hypothetical protein TRIADDRAFT_54172 [Trichoplax adhaerens] gi|190586794|gb|EDV26847.1| hypothetical protein TRIADDRAFT_54172 [Trichoplax adhaerens] Length = 302 Score = 37.9 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 14/37 (37%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 DF FL A + + I D+ IE L+ Sbjct: 111 DFSKDSFLEGANQAMKMICDAISTDDYSRIEDLLSPE 147 >gi|226941931|ref|YP_002797005.1| hypothetical protein LHK_03018 [Laribacter hongkongensis HLHK9] gi|226716858|gb|ACO75996.1| hypothetical protein LHK_03018 [Laribacter hongkongensis HLHK9] Length = 333 Score = 37.9 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 18/192 (9%), Positives = 52/192 (27%), Gaps = 29/192 (15%) Query: 42 SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPK 101 +G I + TRL Sbjct: 170 AGMVPPNARAPLNPNAFKINPTGSVPVPPIGGGYAQPAALTRLPDGTE----------VP 219 Query: 102 DFLNEARNSYEAIVDSFFEGK-VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160 F+ +A+ ++ + S V + K + +++ ++ + +D Sbjct: 220 HFVRQAKATF-MHLQSMNNPDNVEEVRKYLTPELFEQLRADIA-----GNPETADFPQLD 273 Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN 220 + ++ + + ++R L+ S + W F+++ ++ Sbjct: 274 CQVVDASTEADGRIVASVRFS-----------GLVSESVGAPALPFAETWHFIKS-DATS 321 Query: 221 PNWVLISTKLGE 232 WV+ + + Sbjct: 322 QKWVVAGIQQDQ 333 >gi|326922533|ref|XP_003207503.1| PREDICTED: uncharacterized protein C2orf47 homolog, mitochondrial-like, partial [Meleagris gallopavo] Length = 170 Score = 37.9 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 23/48 (47%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 ++F ++F A+ ++ + + K+ ++ LV + V Q + + Sbjct: 14 DSEFSIEEFTRGAKQAFSVVSQLLSQRKLDLLDGLVSAEVLQMLKEKI 61 >gi|168703587|ref|ZP_02735864.1| hypothetical protein GobsU_28900 [Gemmata obscuriglobus UQM 2246] Length = 269 Score = 37.9 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 11/93 (11%), Positives = 28/93 (30%), Gaps = 9/93 (9%) Query: 19 ITFFVFLQLRGVL--GKKTGNEKPFSGFFSGKYVFSKRDERGIIT-------LGKGKKKD 69 + F+ +LR VL G + G +P + +++ + + + Sbjct: 121 MAEFLVGRLRAVLPAGTRVGFLEPDFRRPLAQLARAEQQRPELAPLLTFARAINELYAAR 180 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKD 102 + R++ V+ F + Sbjct: 181 RISPAVGASLAPAMYESGYREVKHVWHPFATDE 213 >gi|20130393|ref|NP_611989.1| CG3776 [Drosophila melanogaster] gi|7291887|gb|AAF47306.1| CG3776 [Drosophila melanogaster] gi|17944240|gb|AAL48014.1| LD24657p [Drosophila melanogaster] gi|220944864|gb|ACL84975.1| Jhebp29-PA [synthetic construct] gi|220954772|gb|ACL89929.1| Jhebp29-PA [synthetic construct] Length = 263 Score = 37.9 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 44/112 (39%), Gaps = 11/112 (9%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS-----TRKS-- 147 ++F KDF+ A+ + + + G + +++ LV + + R+ Sbjct: 101 DSEFQLKDFIYGAKQALQVVSSKLMGGDLDSLDNLVSPEAIAELRPVIQKLSMTQRRQLE 160 Query: 148 -NEKNVKSSLVGIDDMKIINA--SIEENTVYITIRI-VGQFISASYDKDNLL 195 E ++ S + +A +++ V IT+ V + +S ++ + Sbjct: 161 IKESDIYLSFPYQVGIMFDDANDKLQKRFVEITMVFHVMRGLSEMRERGEEI 212 >gi|319784486|ref|YP_004143962.1| hypothetical protein Mesci_4803 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170374|gb|ADV13912.1| hypothetical protein Mesci_4803 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 257 Score = 37.9 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 10/100 (10%), Positives = 26/100 (26%), Gaps = 8/100 (8%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 E P + + + + + + + + V D Sbjct: 42 ELPPTVTPPADDMSPPGSTVPMPNPVGTPPPSSQPTAPAEAEPDSPADGGVTR-PRVDPD 100 Query: 98 -------FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 +D R ++ IV++ G + + L+ Sbjct: 101 TPVPEVIYDLGKLPEPVRRMHDLIVEACKGGDIEKLRPLI 140 >gi|17545005|ref|NP_518407.1| hypothetical protein RSc0286 [Ralstonia solanacearum GMI1000] gi|17427295|emb|CAD13814.1| probable cell division ftsn transmembrane protein [Ralstonia solanacearum GMI1000] Length = 238 Score = 37.9 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 15/149 (10%), Positives = 42/149 (28%), Gaps = 21/149 (14%) Query: 37 NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT 96 N+ + + ++ + + P+ + ++ R + Sbjct: 103 NQPGTQPGTQPASQATPKPAEPGSSVAMQRPPKPVTPAPAEKPVADPIAEIARQDAAKTG 162 Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS- 155 F + A + +G + Q F ++ R+ N Sbjct: 163 YFLQVGAYDSAEYAERQ------KGNLA----------MQGFEAKVTQREVNGSTKYRVR 206 Query: 156 ---LVGIDDMKIINASIEENTVYITI-RI 180 +D+M + + ++ + V T+ R Sbjct: 207 LGPFNSLDEMTAVRSRLQASGVESTVIRF 235 >gi|91228595|ref|ZP_01262513.1| hypothetical protein V12G01_00367 [Vibrio alginolyticus 12G01] gi|91187827|gb|EAS74141.1| hypothetical protein V12G01_00367 [Vibrio alginolyticus 12G01] Length = 148 Score = 37.5 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFS 52 IL+ I F +F +RG+LG K G ++P G + K+ Sbjct: 96 ILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQP 140 >gi|311272864|ref|XP_003133619.1| PREDICTED: uncharacterized protein C2orf47 homolog, mitochondrial-like [Sus scrofa] Length = 288 Score = 37.5 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 7/49 (14%), Positives = 19/49 (38%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +F +F A+ ++ + + K +E+LV + ++ Sbjct: 133 DQEFSIAEFSEGAKQAFSHVSKLLSQCKFDLLEELVAKEALHVLKEKVT 181 >gi|153838005|ref|ZP_01990672.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] gi|149748613|gb|EDM59472.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] Length = 168 Score = 37.5 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFS 52 IL+ I F +F +RG+LG K G ++P G + K+ Sbjct: 96 ILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNASKFEQP 140 >gi|283959137|ref|ZP_06376578.1| TcaA protein [Staphylococcus aureus subsp. aureus A017934/97] gi|283788729|gb|EFC27556.1| TcaA protein [Staphylococcus aureus subsp. aureus A017934/97] Length = 460 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F + + + F D + R S SL+ I +II+A + + Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 T+R+V + DK+ L + + Sbjct: 427 TVRLVNENGKQV-DKEYELEQGPQDRLQLIK 456 >gi|49484571|ref|YP_041795.1| teicoplanin resistance associated membrane protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257423838|ref|ZP_05600267.1| teicoplanin resistance associated membrane protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257426521|ref|ZP_05602923.1| teicoplanin resistance associated membrane protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257429157|ref|ZP_05605544.1| teicoplanin resistance associated membrane protein [Staphylococcus aureus subsp. aureus 68-397] gi|257431803|ref|ZP_05608166.1| teicoplanin resistance associated membrane protein [Staphylococcus aureus subsp. aureus E1410] gi|257434763|ref|ZP_05610814.1| teicoplanin resistance associated membrane protein [Staphylococcus aureus subsp. aureus M876] gi|282902268|ref|ZP_06310161.1| TcaA protein [Staphylococcus aureus subsp. aureus C160] gi|282906697|ref|ZP_06314545.1| membrane-associated protein tcaA [Staphylococcus aureus subsp. aureus Btn1260] gi|282909673|ref|ZP_06317482.1| teicoplanin resistance associated membrane protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911919|ref|ZP_06319715.1| teicoplanin resistance associated membrane protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282915215|ref|ZP_06322992.1| TcaA protein [Staphylococcus aureus subsp. aureus M899] gi|282920939|ref|ZP_06328657.1| membrane-associated protein tcaA [Staphylococcus aureus subsp. aureus C427] gi|282925845|ref|ZP_06333493.1| membrane-associated protein tcaA [Staphylococcus aureus subsp. aureus C101] gi|293497611|ref|ZP_06665465.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 58-424] gi|293511190|ref|ZP_06669886.1| membrane-associated protein tcaA [Staphylococcus aureus subsp. aureus M809] gi|293549798|ref|ZP_06672470.1| TcaA protein [Staphylococcus aureus subsp. aureus M1015] gi|295428937|ref|ZP_06821561.1| membrane-associated protein tcaA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589568|ref|ZP_06948209.1| Teicoplanin resistance protein TcaA [Staphylococcus aureus subsp. aureus MN8] gi|81650499|sp|Q6GE78|TCAA_STAAR RecName: Full=Membrane-associated protein tcaA gi|49242700|emb|CAG41424.1| teicoplanin resistance associated membrane protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257272856|gb|EEV04958.1| teicoplanin resistance associated membrane protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257276152|gb|EEV07603.1| teicoplanin resistance associated membrane protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279638|gb|EEV10225.1| teicoplanin resistance associated membrane protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282682|gb|EEV12814.1| teicoplanin resistance associated membrane protein [Staphylococcus aureus subsp. aureus E1410] gi|257285359|gb|EEV15475.1| teicoplanin resistance associated membrane protein [Staphylococcus aureus subsp. aureus M876] gi|282312674|gb|EFB43078.1| membrane-associated protein tcaA [Staphylococcus aureus subsp. aureus C101] gi|282315354|gb|EFB45738.1| membrane-associated protein tcaA [Staphylococcus aureus subsp. aureus C427] gi|282320936|gb|EFB51270.1| TcaA protein [Staphylococcus aureus subsp. aureus M899] gi|282323615|gb|EFB53931.1| teicoplanin resistance associated membrane protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282326247|gb|EFB56551.1| teicoplanin resistance associated membrane protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329596|gb|EFB59117.1| membrane-associated protein tcaA [Staphylococcus aureus subsp. aureus Btn1260] gi|282596727|gb|EFC01686.1| TcaA protein [Staphylococcus aureus subsp. aureus C160] gi|290918845|gb|EFD95921.1| TcaA protein [Staphylococcus aureus subsp. aureus M1015] gi|291096542|gb|EFE26800.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 58-424] gi|291465816|gb|EFF08346.1| membrane-associated protein tcaA [Staphylococcus aureus subsp. aureus M809] gi|295127286|gb|EFG56928.1| membrane-associated protein tcaA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297578079|gb|EFH96792.1| Teicoplanin resistance protein TcaA [Staphylococcus aureus subsp. aureus MN8] gi|312437228|gb|ADQ76299.1| Teicoplanin resistance protein TcaA [Staphylococcus aureus subsp. aureus TCH60] gi|315193621|gb|EFU24017.1| teicoplanin resistance associated membrane protein [Staphylococcus aureus subsp. aureus CGS00] Length = 460 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F + + + F D + R S SL+ I +II+A + + Sbjct: 374 AFNQSDFDFVSSYIKKG--SSFYDDVKKRVSKG-----SLMMISSPQIIDAEKHGDKITA 426 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 T+R+V + DK+ L + + Sbjct: 427 TVRLVNENGKQV-DKEYELEQGPQDRLQLIK 456 >gi|328701155|ref|XP_001951633.2| PREDICTED: uncharacterized protein C2orf47 homolog, mitochondrial-like [Acyrthosiphon pisum] gi|239789772|dbj|BAH71488.1| ACYPI004057 [Acyrthosiphon pisum] Length = 279 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 41/106 (38%), Gaps = 14/106 (13%) Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151 + DF +F +R + E + + + ++ LV + V + +S Sbjct: 119 PQLDKDFSLGEFAKNSRKAVEVVSNCISKRDFTTLQGLVTNDVLEQVKSIVSD------- 171 Query: 152 VKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197 ++D +I + + + + +Y+ + + I+ + KD + Sbjct: 172 -------LNDNEIKDMAFDNDDMYLFLPVQLDIINDTKLKDRRFVE 210 >gi|225375951|ref|ZP_03753172.1| hypothetical protein ROSEINA2194_01588 [Roseburia inulinivorans DSM 16841] gi|225212204|gb|EEG94558.1| hypothetical protein ROSEINA2194_01588 [Roseburia inulinivorans DSM 16841] Length = 197 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 56/175 (32%), Gaps = 18/175 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M++ +I++ A + G + V + G Sbjct: 1 MNNWIPVIVILAVLAG-------------GGYYAYRKIKRKVEDVSQALFGTDSLVEGWN 47 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 K+ D L + + TR+ + I + DF+ F N+A N + + + G V Sbjct: 48 KQADELAATPKSVSGMTRIFEP--QIQRDFPDFNLVQFKNKAENMLVSALQAIDSGNVSL 105 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 I + + + +S + I +I N E+N +++ Sbjct: 106 IRD-ASEELKAQVENRIEMNRSEGIREVYEKIRIHRTEISN--YEKNRENVSLHF 157 >gi|134085699|ref|NP_001076875.1| hypothetical protein LOC510566 precursor [Bos taurus] gi|158513402|sp|A3KN05|CB047_BOVIN RecName: Full=Uncharacterized protein C2orf47 homolog, mitochondrial; Flags: Precursor gi|126717401|gb|AAI33464.1| C2H2orf47 protein [Bos taurus] gi|296490429|gb|DAA32542.1| hypothetical protein LOC510566 precursor [Bos taurus] Length = 291 Score = 37.2 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 7/49 (14%), Positives = 19/49 (38%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +F +F A+ ++ + + K +E+LV + ++ Sbjct: 136 DQEFSITEFSEGAKQAFAHVSKLLSQCKFDLLEELVAKETLHVLKEKVT 184 >gi|297193178|ref|ZP_06910576.1| 2,4-dienoyl-CoA reductase [Streptomyces pristinaespiralis ATCC 25486] gi|297151675|gb|EFH31303.1| 2,4-dienoyl-CoA reductase [Streptomyces pristinaespiralis ATCC 25486] Length = 684 Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 34/95 (35%), Gaps = 21/95 (22%) Query: 25 LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPI---- 80 ++LR LG + G + + + ++ G + ++D ++ + Sbjct: 453 VRLR--LGTRVG----------ADDLPAADFDEVVVATGVTPRTPDIDGVDHPSVVSYLD 500 Query: 81 ----GTRLNKVMRDIVSVYTDFDPKDFL-NEARNS 110 G + + + I + FD +FL + + Sbjct: 501 VLRDGAPVGERVAVIGAGGIGFDVAEFLTDGGEGA 535 >gi|323691491|ref|ZP_08105762.1| hypothetical protein HMPREF9475_00624 [Clostridium symbiosum WAL-14673] gi|323504464|gb|EGB20255.1| hypothetical protein HMPREF9475_00624 [Clostridium symbiosum WAL-14673] Length = 221 Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND-SLSTRKSNEKNVKSSLVGIDDMKIIN 166 R + E + +F + ++ + L V F L+ KS E+ + I K+ + Sbjct: 2 RKAAEQVQKAFEKKDLNKLADLCSYPVVVSFKSGELAELKSKEEFMALGSQTIFTQKMTD 61 Query: 167 ASIEENTVYIT 177 A N +T Sbjct: 62 AIASTNVAKLT 72 >gi|323483063|ref|ZP_08088456.1| hypothetical protein HMPREF9474_00205 [Clostridium symbiosum WAL-14163] gi|323403603|gb|EGA95908.1| hypothetical protein HMPREF9474_00205 [Clostridium symbiosum WAL-14163] Length = 265 Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND-SLSTRKSNEKNVKSSLVGIDDMKIIN 166 R + E + +F + ++ + L V F L+ KS E+ + I K+ + Sbjct: 46 RKAAEQVQKAFEKKDLNKLADLCSYPVVVSFKSGELAELKSKEEFMALGSQTIFTQKMTD 105 Query: 167 ASIEENTVYIT 177 A N +T Sbjct: 106 AIASTNVAKLT 116 >gi|195121668|ref|XP_002005342.1| GI20427 [Drosophila mojavensis] gi|193910410|gb|EDW09277.1| GI20427 [Drosophila mojavensis] Length = 226 Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 45/116 (38%), Gaps = 19/116 (16%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS-----TRKSNE 149 ++F KDF+ A+ + + + G + ++ LV + + RK Sbjct: 64 DSEFQIKDFVYGAKQALQVVSSKLVGGDLSQLQDLVTPEAIAELKPVVQKLSMTQRKQL- 122 Query: 150 KNVKSSL-------VGIDDMKIINA--SIEENTVYITIRI-VGQFISASYDKDNLL 195 + +S + +GI +A +++ V IT+ V + ++ ++ + Sbjct: 123 EIHESDIYLSFPYQIGI---MFDDANDKLQKRWVEITMVFHVMRGLTEMRERGEEI 175 >gi|297582623|ref|YP_003698403.1| glycerophosphoryl diester phosphodiesterase [Bacillus selenitireducens MLS10] gi|297141080|gb|ADH97837.1| glycerophosphoryl diester phosphodiesterase [Bacillus selenitireducens MLS10] Length = 341 Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 5/72 (6%) Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT-----IRIVGQFISASYDKDN 193 ++ R ++ +S+ ID ++A E + IT + IS + D + Sbjct: 70 VKVIAHRGASGHAPESTTHAIDKAIEMDADWIELDIQITADGHLVAFHDDEISRTTDGEG 129 Query: 194 LLISSDPEIFGK 205 + + + Sbjct: 130 EIGDHTLDELKE 141 >gi|42522681|ref|NP_968061.1| hypothetical protein Bd1136 [Bdellovibrio bacteriovorus HD100] gi|39573877|emb|CAE79054.1| hypothetical protein predicted by Glimmer/Critica [Bdellovibrio bacteriovorus HD100] Length = 139 Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 38/134 (28%), Gaps = 17/134 (12%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S DFL L F+ L + G+ +P + K E Sbjct: 1 MNSQDFLTLNLVGAGAFIAWYLLS----RGGSRRPTQLNLNAKDSAPPLMEAAPPEKAGL 56 Query: 66 KKKDNLDSINELFPIGTR-----LNKVMRDIVSVYTDFDPKDFLNEA-----RNSYEAIV 115 + S ++ P + LN + + ++ A +Y Sbjct: 57 EPLRRQASTPQVHPDLSGVKTKCLNVMFNYNGHSWDAYEVLGVPAGASLKLVTEAY---Q 113 Query: 116 DSFFEGKVHAIEKL 129 + ++E L Sbjct: 114 TAIRRSDKESLEFL 127 >gi|195029603|ref|XP_001987661.1| GH19839 [Drosophila grimshawi] gi|193903661|gb|EDW02528.1| GH19839 [Drosophila grimshawi] Length = 226 Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 10/96 (10%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS-----TRKS-- 147 ++F KDF+ A+ + + + G ++ ++ LV + + RK Sbjct: 64 DSEFQIKDFIFGAKQALQVVSSKLVGGDLNQLQDLVTPDAIAELKPVIQKLSMTQRKQLE 123 Query: 148 -NEKNVKSSLVGIDDMKIINA--SIEENTVYITIRI 180 NE ++ S + +A +++ V IT+ Sbjct: 124 INESDIYLSFPYQIGIMFDDANDKLQKRWVEITMVF 159 >gi|15672597|ref|NP_266771.1| hypothetical protein L3407 [Lactococcus lactis subsp. lactis Il1403] gi|12723512|gb|AAK04713.1|AE006294_8 unknown protein [Lactococcus lactis subsp. lactis Il1403] gi|326406115|gb|ADZ63186.1| conserved hypothetical protein [Lactococcus lactis subsp. lactis CV56] Length = 243 Score = 37.2 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 12/105 (11%) Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV---GIDDMKIINASIE 170 + D++ + + A+ + +Y+ L + + V GI K ++ Sbjct: 130 VQDAWDKHDLRALSESYGDNLYEKHEKILQKMSDKGQINHTRSVVLDGIMRYK----EVK 185 Query: 171 ENTVYITIRIVG--QFISASYDKDNLLISSDPEIFGKVIDIWTFV 213 +N + + V +S +I+ + + WTF Sbjct: 186 DNQFEVDLYFVAIDYLVSV---NSGQIIAGNTQERRAFKQRWTFS 227 >gi|78485054|ref|YP_390979.1| fatty acid/phospholipid synthesis protein PlsX [Thiomicrospira crunogena XCL-2] gi|123555757|sp|Q31HR8|PLSX_THICR RecName: Full=Phosphate acyltransferase; AltName: Full=Acyl-ACP phosphotransacylase; AltName: Full=Acyl-[acyl-carrier-protein]--phosphate acyltransferase; AltName: Full=Phosphate-acyl-ACP acyltransferase gi|78363340|gb|ABB41305.1| phosphate:acyl-[acyl carrier protein] acyltransferase [Thiomicrospira crunogena XCL-2] Length = 337 Score = 37.2 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 12/141 (8%) Query: 29 GVLGKKTG-NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87 VL + N +P G + K +R K D ++ + + G + K Sbjct: 163 SVLAQAVDSNSRPRVGLLNIGEEEIKGHQRIKDANEILKSSDAINYVGYV--EGDEIFKG 220 Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIV----DSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 D+VS FD L + + I +F + + + LV V + F + Sbjct: 221 DVDVVSCD-GFDGNVALKASEGVAKMISFYLRAAFNKNLLTKLAGLVVYPVLKAFKAKVD 279 Query: 144 TRKSNEKNVKSSLVGIDDMKI 164 R+ N +S +G+ + I Sbjct: 280 PRRYNG----ASFLGLRKIVI 296 >gi|297571195|ref|YP_003696969.1| translation initiation factor IF-2 [Arcanobacterium haemolyticum DSM 20595] gi|296931542|gb|ADH92350.1| translation initiation factor IF-2 [Arcanobacterium haemolyticum DSM 20595] Length = 971 Score = 37.2 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 15/125 (12%), Positives = 36/125 (28%), Gaps = 11/125 (8%) Query: 33 KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIV 92 K+ E+ S G + + D + I+ + M ++ Sbjct: 349 KRQEWEEQQSPMLQGVQIPRGDGSTVVRVRAGASLADFAERIDADPAALVTVLFRMGEMA 408 Query: 93 SVYTDFDPKDF-LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151 + D F L A Y+ + S + + + F+ + + ++ Sbjct: 409 TANQSLDEDTFALLGAELGYDIKIMSAEDEDREIL---------ESFDIDIDA-EHAGES 458 Query: 152 VKSSL 156 + L Sbjct: 459 DEDRL 463 >gi|323701289|ref|ZP_08112964.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum nigrificans DSM 574] gi|323533891|gb|EGB23755.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum nigrificans DSM 574] Length = 459 Score = 37.2 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 26/209 (12%), Positives = 56/209 (26%), Gaps = 43/209 (20%) Query: 16 FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 A + G+ G ++ +KR + I + K D+ Sbjct: 285 LAVVAV----------GRYVGLSFSQIAAALREFKGAKRRYQLIGEVKGAKIVDDYAHHP 334 Query: 76 ELFPIGTRLNKVMRDIVSVYTD-----FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 T + ++ + F P F R + +SF + L+ Sbjct: 335 ------TEIKATLQAARQAHPGRIIAVFQPHRFTR-TRQLFREFGESFAHADI-----LI 382 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 + +Y + G+ I++A + + + A+ Sbjct: 383 LTDIYPAGEKPIE--------------GVHTKLIVDAIAKRPNQQ--VIYLPTLEEATNF 426 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 + D + D+WT R + Sbjct: 427 LTQQVTEGDLVLTMGAGDVWTVGRELLQR 455 >gi|312384625|gb|EFR29310.1| hypothetical protein AND_01857 [Anopheles darlingi] Length = 221 Score = 36.8 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 5/56 (8%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS----RVYQDFND-SLSTR 145 DF+ DF+ A+ + + + + G+ +E LVD V Q + S++ R Sbjct: 61 DRDFNIPDFVIGAKQALQVVSLALAGGEAKQLEGLVDRVALNDVKQSLSKMSVAER 116 >gi|146412672|ref|XP_001482307.1| hypothetical protein PGUG_05327 [Meyerozyma guilliermondii ATCC 6260] gi|146393071|gb|EDK41229.1| hypothetical protein PGUG_05327 [Meyerozyma guilliermondii ATCC 6260] Length = 420 Score = 36.8 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 16/141 (11%), Positives = 44/141 (31%), Gaps = 8/141 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY--EAIVDSFFEGKVHAIEKLVDSRVYQD 137 T KV++ + + F DF N Y ++D++ + +++ + + Sbjct: 255 AETEQAKVIKQLRQIDPSFRITDFTRTLTN-YIVPELLDAYIKNDDKVLKQWLSEAPFNV 313 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG----QFISASYDKDN 193 + + ++ I + I+ + + I + +V + K Sbjct: 314 WQANNKQFVQQGLFSDGRILDIRGVDIVTCKMLQPN-EIPVVVVSCRAQEIHLFRKAKTG 372 Query: 194 LLISSDPEIFGKVIDIWTFVR 214 + + + F R Sbjct: 373 EVAAGTEDHIQLSTYAMVFTR 393 >gi|284038224|ref|YP_003388154.1| amidase [Spirosoma linguale DSM 74] gi|283817517|gb|ADB39355.1| Amidase [Spirosoma linguale DSM 74] Length = 526 Score = 36.8 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 43/140 (30%), Gaps = 16/140 (11%) Query: 35 TGNEKPFSGFFSGKYVFS---KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDI 91 G +P G S + D G I LD I T + I Sbjct: 220 VGF-RPTLGLVSRDGIAPLAMTNDTGGPICRTVEDAVRVLDVIAGYDKADTVTKRSAGKI 278 Query: 92 VSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEK 150 Y F KD L AR + +V D +VY FN +L ++ Sbjct: 279 PQTYRQFLDKDGLKGARIGVFRQMVMPKNS----------DPQVYALFNKALDELRAAGA 328 Query: 151 NVKSSLVGIDDMKIINASIE 170 V V + + IN S + Sbjct: 329 IV-IDSVRVPQLDTINKSFD 347 >gi|145348931|ref|XP_001418895.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579125|gb|ABO97188.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 347 Score = 36.8 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 11/136 (8%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGK----GKKKDNLDSINELFPIGTRLNKVMRDIVS 93 E+ S S R RG + +++ PI R +R + + Sbjct: 14 ERRASTPASTSSRVPARTRRGAPPRAGFGAAVPTARSAAVLDKHVPID-RYADGLRQLHA 72 Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153 F DFL+ + + I + +G + VY + + + S + Sbjct: 73 SPDVFVVDDFLSADACA-DIIARAKAKGDMTQ-----SPVVYAGWTNDVEAWTSTVSSGP 126 Query: 154 SSLVGIDDMKIINASI 169 + +G M I +A+ Sbjct: 127 AVWIGALAMLIGSAAF 142 >gi|301101505|ref|XP_002899841.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262102843|gb|EEY60895.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 285 Score = 36.8 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 53/165 (32%), Gaps = 38/165 (23%) Query: 102 DFLNEARNSYEAIVDS--------FFEG------KVHAIEKLVDSRVYQDFNDS----LS 143 +FL A+ + +A + + + G + R +++ ++ L Sbjct: 88 EFLEGAKMAAKAQLKAVNSKDFAEYAAGIASESKAAEELSNFCTPRFFENLREAAADTLR 147 Query: 144 TR----KSNEKNVKSSLV-GIDDMKIINASIEENTVYITI--------------RIVGQF 184 R + + NV+S +V G+ ++ E T + + +I Q Sbjct: 148 DRNMTLELQDINVESIVVAGVRYAQLTQTEYEAQTAGLAVLPFFWASDASIEYMQIHVQT 207 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP-SNPNWVLIST 228 S K L+ + WTF + W ++ T Sbjct: 208 RSLETTKMTLIGQEECFALQDNSRTWTFGSKVGSVEELEWRIVKT 252 >gi|314933179|ref|ZP_07840544.1| ATP-dependent nuclease subunit A [Staphylococcus caprae C87] gi|313653329|gb|EFS17086.1| ATP-dependent nuclease subunit A [Staphylococcus caprae C87] Length = 1218 Score = 36.8 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 35/103 (33%), Gaps = 22/103 (21%) Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167 + +YE I+ SF ++ F++ + + V+ I +I Sbjct: 225 KAAYEEIIKSFN--------------LFSMFDNV----EKQLEVVEDERRFISK--VIEG 264 Query: 168 SIEENTVYITIRIVGQFISASY--DKDNLLISSDPEIFGKVID 208 + ++ + V +F S + + N + + K D Sbjct: 265 DMINTDALVSHQFVSRFPSITKKIKEANEGMEEALDDAKKHYD 307 >gi|158298862|ref|XP_319011.4| AGAP009891-PA [Anopheles gambiae str. PEST] gi|157014090|gb|EAA14399.5| AGAP009891-PA [Anopheles gambiae str. PEST] Length = 285 Score = 36.8 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 +F +F+ + + + + S G+V +E LVD D SL+ Sbjct: 125 DREFSLPEFIQGTKQALQVVSSSLAGGEVKQLEGLVDRAALADLKQSLA 173 >gi|327291848|ref|XP_003230632.1| PREDICTED: uncharacterized protein C2orf47 homolog, mitochondrial-like, partial [Anolis carolinensis] Length = 183 Score = 36.8 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 20/48 (41%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 +F +F A+ ++ + + K +E+LV + Q + L Sbjct: 103 DQEFSIHEFTEGAKQAFAHVSRLIAQCKYDLLEELVSKEMVQILKEKL 150 >gi|82617538|ref|NP_001032303.1| hypothetical protein LOC552941 [Danio rerio] gi|81097772|gb|AAI09475.1| Zgc:123096 [Danio rerio] gi|157423611|gb|AAI53656.1| Zgc:123096 protein [Danio rerio] Length = 243 Score = 36.4 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 18/40 (45%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 +F ++F+ A ++ + + + A+E LV + Sbjct: 85 DKEFSIEEFMEGAIQAFSHVSRLLSQCQFEALEGLVAKDL 124 >gi|50417024|gb|AAH77162.1| Zgc:123096 protein [Danio rerio] Length = 236 Score = 36.4 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 18/40 (45%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 +F ++F+ A ++ + + + A+E LV + Sbjct: 78 DKEFSIEEFMEGAIQAFSHVSRLLSQCQFEALEGLVAKDL 117 >gi|156554910|ref|XP_001604813.1| PREDICTED: similar to juvenile hormone esterase binding protein [Nasonia vitripennis] Length = 258 Score = 36.4 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 18/48 (37%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 DF+ DFL+ + + + + +I+ LVD + Sbjct: 100 DNDFNLPDFLDGTKQALSVVSSALAREDYDSIQDLVDKETLAKTRQKI 147 >gi|260815523|ref|XP_002602522.1| hypothetical protein BRAFLDRAFT_93828 [Branchiostoma floridae] gi|229287833|gb|EEN58534.1| hypothetical protein BRAFLDRAFT_93828 [Branchiostoma floridae] Length = 1324 Score = 36.4 bits (83), Expect = 3.5, Method: Composition-based stats. Identities = 8/69 (11%), Positives = 25/69 (36%), Gaps = 8/69 (11%) Query: 14 LLFAFITFFVFLQLRGVLGKKTGNE--KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71 L+ + F+F + ++ G E + + ++R + + ++ Sbjct: 639 LVLVAVAIFIFWR------RRRGKESSRAPPPSVPISQLPTRRPKEESEEVDAVDIRNPN 692 Query: 72 DSINELFPI 80 ++ E+ P Sbjct: 693 PTVAEVSPT 701 >gi|5020383|gb|AAD38067.1| juvenile hormone esterase binding protein [Manduca sexta] Length = 243 Score = 36.4 bits (83), Expect = 3.6, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 4/73 (5%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKS 154 +F +F+ ++++ + + D+ + A+E LV+ ++ S + Sbjct: 86 DQEFSLGEFIEASKHAVQVVSDALQQSDFKALEGLVEKDAIAALKTAV----SKLSVSQR 141 Query: 155 SLVGIDDMKIINA 167 L+ ID I A Sbjct: 142 QLLAIDKEDIFYA 154 >gi|300705361|ref|YP_003746964.1| hypothetical protein RCFBP_21207 [Ralstonia solanacearum CFBP2957] gi|299073025|emb|CBJ44382.1| conserved exported protein of unknown function [Ralstonia solanacearum CFBP2957] Length = 240 Score = 36.4 bits (83), Expect = 3.7, Method: Composition-based stats. Identities = 16/150 (10%), Positives = 44/150 (29%), Gaps = 24/150 (16%) Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELF---PIGTRLNKVMRDIVSVY 95 +P + + + + + + K + P+ + ++ R + Sbjct: 104 QPGAQAQTPATTAKPAEPGSSVAMQRPPKPVGTPPAEKPAAEKPVADPIAEIARQDAAKT 163 Query: 96 TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155 F + A + +G + Q F ++ R+ N Sbjct: 164 GYFLQVGAYDSAEYAERQ------KGNLA----------MQGFEAKVTQREVNGATKYRV 207 Query: 156 ----LVGIDDMKIINASIEENTVYITI-RI 180 +D+M + + ++ + V T+ R Sbjct: 208 RLGPFNSLDEMTAVRSRLQASGVESTVIRF 237 >gi|290968336|ref|ZP_06559877.1| dinuclear metal center protein, YbgI family [Megasphaera genomosp. type_1 str. 28L] gi|290781611|gb|EFD94198.1| dinuclear metal center protein, YbgI family [Megasphaera genomosp. type_1 str. 28L] Length = 373 Score = 36.0 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Query: 26 QLRGVLGKK----TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIG 81 QLR VLGK G + S SG+ F+ +D GK + + E G Sbjct: 149 QLRSVLGKAGAGYIGKYRDCSFSVSGQGRFTPQDGTHPFIGMPGKAETVAEERIETIVPG 208 Query: 82 TRLNKVMRDIVSVYT 96 +RL+ V+ +V+ + Sbjct: 209 SRLSAVIETMVAAHP 223 >gi|171060670|ref|YP_001793019.1| two component Fis family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170778115|gb|ACB36254.1| two component transcriptional regulator, Fis family [Leptothrix cholodnii SP-6] Length = 240 Score = 36.0 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 4/86 (4%) Query: 27 LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK 86 LR V + G KP + + + ++D L + + Sbjct: 111 LRAV---EQGLAKPVPPP-QRSMAPLAATMPAPVPMRNDRDYRSIDLQPMLNSVPQPVIS 166 Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYE 112 V+ +F L EAR+++E Sbjct: 167 VLSSGPQSDQNFSLDRPLREARDAFE 192 >gi|83748527|ref|ZP_00945548.1| FtsN [Ralstonia solanacearum UW551] gi|207742124|ref|YP_002258516.1| cell division protein ftsn [Ralstonia solanacearum IPO1609] gi|83724831|gb|EAP71988.1| FtsN [Ralstonia solanacearum UW551] gi|206593512|emb|CAQ60439.1| cell division protein ftsn [Ralstonia solanacearum IPO1609] Length = 240 Score = 36.0 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 16/150 (10%), Positives = 43/150 (28%), Gaps = 24/150 (16%) Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELF---PIGTRLNKVMRDIVSVY 95 +P + + + + + K + P+ + ++ R + Sbjct: 104 QPGAQAQTPATTAKPAEPGSSVAMQHPPKAVGTPPAEKPAAEKPVADPIAEIARQDAAKT 163 Query: 96 TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155 F + A + +G + Q F ++ R+ N Sbjct: 164 GYFLQVGAYDSAEYAERQ------KGNLA----------MQGFEAKVTQREVNGTTKYRV 207 Query: 156 ----LVGIDDMKIINASIEENTVYITI-RI 180 +D+M + + ++ + V T+ R Sbjct: 208 RLGPFNSLDEMTAVRSRLQASGVESTVIRF 237 >gi|330937393|gb|EGH41378.1| import inner membrane translocase, subunit Tim44 [Pseudomonas syringae pv. pisi str. 1704B] Length = 179 Score = 36.0 bits (82), Expect = 4.5, Method: Composition-based stats. Identities = 13/102 (12%), Positives = 28/102 (27%), Gaps = 21/102 (20%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F IL+ I F+ + + K G + + Sbjct: 95 LFDILIMGLIA-FLIFR---------------FIARRRQQQQPKMAAAGAPPYQRETSQP 138 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY 111 + I + +++ F+ + FL+ AR + Sbjct: 139 AQNPIFGSSSPASA-----APVINAPAWFNEQRFLDAARGHF 175 >gi|164429129|ref|XP_956785.2| hypothetical protein NCU00466 [Neurospora crassa OR74A] gi|157072421|gb|EAA27549.2| conserved hypothetical protein [Neurospora crassa OR74A] Length = 330 Score = 35.6 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 4/72 (5%) Query: 163 KIINASIEENTVY--ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN 220 + +A ++ + +R + + +S PE + WT R P + Sbjct: 180 SLQHAKLDGEEARPSVVMRFIVEQLSDIVSSKGE--EGSPEEKKAEAEEWTAERIKPVVD 237 Query: 221 PNWVLISTKLGE 232 +S E Sbjct: 238 ATVKAVSVSDPE 249 >gi|325295715|ref|YP_004282229.1| Prolyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325066163|gb|ADY74170.1| Prolyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 576 Score = 35.6 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 14/119 (11%) Query: 92 VSVYTDFDPKDFLNEARNS-YEAIVDSFFEGKVHAIEKLVDSRVYQ-----DFNDSLSTR 145 +V ++D + + +E IV K IE +Y F+ ++ R Sbjct: 451 AAVEQNYDENGIIWPVEIAPFEVIVIPVNVKKEEIIET--AENIYDELQKNGFDVAIDDR 508 Query: 146 KSNE--KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ----FISASYDKDNLLISS 198 + K + L+GI I+ E V I +R G+ ++ +K L+ Sbjct: 509 NARPGFKFKDADLIGIPYQIIVGKKAGEGVVEIKVRKTGERFEIAVNKVVEKIGELVRG 567 >gi|299743631|ref|XP_002910687.1| transferase [Coprinopsis cinerea okayama7#130] gi|298405745|gb|EFI27193.1| transferase [Coprinopsis cinerea okayama7#130] Length = 229 Score = 35.6 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 3/84 (3%) Query: 49 YVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPK---DFLN 105 S R + + D E + + D+ +F +F Sbjct: 67 PPSSPRPKEPEPPQPSHQDDDEPSPDGEGDIMDMETFSQLIDLDDDDPEFSKGMVWEFFQ 126 Query: 106 EARNSYEAIVDSFFEGKVHAIEKL 129 +A ++E + +F + + L Sbjct: 127 QAETTFEELDAAFESRDLSTLSSL 150 >gi|217077931|ref|YP_002335649.1| peptide chain release factor 2 [Thermosipho africanus TCF52B] gi|226739131|sp|B7IE81|RF2_THEAB RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|217037786|gb|ACJ76308.1| peptide chain release factor 2 [Thermosipho africanus TCF52B] Length = 369 Score = 35.6 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 18/122 (14%) Query: 97 DFDPKDFLNEARNSYEAIVDSFF-EGKVHAIEKLVDSRVYQD-FNDSLSTRKSNEKNVKS 154 DF+ K ++EA+ +E I+ F E K +E+ ++ ++ F RK+ E + K+ Sbjct: 3 DFELKQKIDEAKKKFEDIIKVFHPENKRKELEE-LEKQMGDSDFWS--DQRKAREISQKA 59 Query: 155 SLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV-IDIWT 211 + IDDMK I A E+ I + D+D + + E+ ++ + T Sbjct: 60 QRIRKIIDDMKDIEAKFEDLDAAIELS----------DEDQSFVETIKEMVEEIEKKVKT 109 Query: 212 FV 213 F Sbjct: 110 FE 111 >gi|207727724|ref|YP_002256118.1| cell division protein ftsn [Ralstonia solanacearum MolK2] gi|206590965|emb|CAQ56577.1| cell division protein ftsn [Ralstonia solanacearum MolK2] Length = 240 Score = 35.6 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 16/150 (10%), Positives = 43/150 (28%), Gaps = 24/150 (16%) Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELF---PIGTRLNKVMRDIVSVY 95 +P + + + + + K + P+ + ++ R + Sbjct: 104 QPGAQAQTPATTAKPAEPGSSVAMQHPPKAVGTPPAEKPAAEKPVADPIAEIARQDAAKT 163 Query: 96 TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155 F + A + +G + Q F ++ R+ N Sbjct: 164 GYFLQVGAYDSAEYAERQ------KGNLA----------MQGFEAKVTQREVNGTTKYRV 207 Query: 156 ----LVGIDDMKIINASIEENTVYITI-RI 180 +D+M + + ++ + V T+ R Sbjct: 208 RLGPFNSLDEMTAVRSRLQASGVESTVIRF 237 >gi|222085403|ref|YP_002543933.1| hypothetical protein Arad_1610 [Agrobacterium radiobacter K84] gi|221722851|gb|ACM26007.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 255 Score = 35.6 bits (81), Expect = 5.8, Method: Composition-based stats. Identities = 11/98 (11%), Positives = 25/98 (25%), Gaps = 6/98 (6%) Query: 40 PFSGFFSGKYVFSKRDERGIITLGKGKK------KDNLDSINELFPIGTRLNKVMRDIVS 93 P + ++++ + D L + S Sbjct: 40 PPAAQPGAASKPAQQNNDKPVEQALEAPSKALPMPDPLVKSQGQSSSNATTSDASTSGKS 99 Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 +D R E IV++ G + + L++ Sbjct: 100 AEIIYDISKVPEPVRKLRETIVEAAASGDLERLRPLMN 137 >gi|124006770|ref|ZP_01691601.1| hypothetical protein M23134_08330 [Microscilla marina ATCC 23134] gi|123987678|gb|EAY27378.1| hypothetical protein M23134_08330 [Microscilla marina ATCC 23134] Length = 155 Score = 35.2 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 12/85 (14%) Query: 112 EAIVDSFFEGKVHAIEKLV--DSRVY------QDFNDSLSTRKSNEKNVK---SSLVGID 160 E + +F G ++ + VY F D + ++ + K S I Sbjct: 11 EGFIKAFEAGDTEKMKSYLADAEAVYRMPYASGMFPDVIEGKEGFHEFTKDWPSIFEKI- 69 Query: 161 DMKIINASIEENTVYITIRIVGQFI 185 D++I+ ++EN + +R + + Sbjct: 70 DLEIVEIILDENAGKVVVRTKVELV 94 >gi|302419951|ref|XP_003007806.1| predicted protein [Verticillium albo-atrum VaMs.102] gi|261353457|gb|EEY15885.1| predicted protein [Verticillium albo-atrum VaMs.102] Length = 310 Score = 35.2 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 1/53 (1%) Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 + G A+ + +Y+ +L R S + +V + + Sbjct: 154 ALAAGDREALRAICTPALYETLGATLDKR-SRHERTTWDVVATHRTWLAAHRV 205 >gi|194756324|ref|XP_001960429.1| GF13356 [Drosophila ananassae] gi|190621727|gb|EDV37251.1| GF13356 [Drosophila ananassae] Length = 267 Score = 35.2 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 43/112 (38%), Gaps = 11/112 (9%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS-----TRKS-- 147 ++F KDF+ A+ + + + G + +++ LV + + R+ Sbjct: 105 DSEFQLKDFIFGAKQALQVVSSRLMGGDLDSLDNLVAPEAISELRPVIQKLSMTQRRQLE 164 Query: 148 -NEKNVKSSLVGIDDMKIINA--SIEENTVYITIRI-VGQFISASYDKDNLL 195 E ++ S + A +++ V IT+ V + +S ++ + Sbjct: 165 IKESDIYLSFPYQVGIMFDEANDKLQKRFVEITMVFHVMRGLSEMRERGEEI 216 >gi|218262532|ref|ZP_03476953.1| hypothetical protein PRABACTJOHN_02631 [Parabacteroides johnsonii DSM 18315] gi|218223318|gb|EEC95968.1| hypothetical protein PRABACTJOHN_02631 [Parabacteroides johnsonii DSM 18315] Length = 986 Score = 35.2 bits (80), Expect = 7.1, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 29/174 (16%) Query: 50 VFSKRDERGIITLGKGKKKDNLDSINELFPIGTRL-NKVMRDIVSVYTDFDPKDFLNEAR 108 V RD+ NLD E + L +++ I + F L A+ Sbjct: 115 VARARDKENGRLQNPRLALYNLDKEEEEQGTRSDLQARIIELIGLTFEQFTRSVLL--AQ 172 Query: 109 NSYEAIVDSFFEGKVHAI-EKLVDSRVYQDFNDSLSTRKSNEKN----VKSSLVGID--- 160 N + + + +G+ ++ EKL + +Y + + R + K+ ++S + GI+ Sbjct: 173 NDFSTFLKA-EQGEKASLLEKLTGTELYSAISRQIFERNARAKDAFDLIQSRIQGIELLT 231 Query: 161 -----------------DMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197 +I A E+ + +R V Q IS + Sbjct: 232 DEEENDLRTRLAQAEKESQRIEKAKAEQQALQEAVRSVEQQISVRRRQQKEAAD 285 >gi|170065218|ref|XP_001867849.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167882301|gb|EDS45684.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 254 Score = 35.2 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 23/48 (47%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 +F DF+ A+ + + + S G++ ++ LV+ + D ++ Sbjct: 91 DREFTLPDFVQGAKQALQVVSASLAGGELKNLDGLVERQTLNDLKTAV 138 >gi|167752289|ref|ZP_02424416.1| hypothetical protein ALIPUT_00533 [Alistipes putredinis DSM 17216] gi|167660530|gb|EDS04660.1| hypothetical protein ALIPUT_00533 [Alistipes putredinis DSM 17216] Length = 748 Score = 35.2 bits (80), Expect = 8.0, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 3/56 (5%) Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA---RNSYEAIVDSFFEGKVHAI 126 + E P+G KV +I V+ + ++ ++ IV++F G + Sbjct: 500 VTEPVPMGFGTEKVEEEIARVFPEARVARLDRDSVTSERAFRQIVEAFARGDDDIL 555 >gi|300692743|ref|YP_003753738.1| hypothetical protein RPSI07_3128 [Ralstonia solanacearum PSI07] gi|299079803|emb|CBJ52480.1| conserved exported protein of unknown function [Ralstonia solanacearum PSI07] Length = 236 Score = 34.9 bits (79), Expect = 8.8, Method: Composition-based stats. Identities = 17/150 (11%), Positives = 44/150 (29%), Gaps = 27/150 (18%) Query: 36 GNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVY 95 G ++P + K ++ + + P+ + ++ R + Sbjct: 106 GTQQPPQAPATPKPAEPAS------SVAVQRPPKPVAPPPAEKPVADPIAEIARQDAAKT 159 Query: 96 TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155 F + A + +G + Q F ++ R+ N Sbjct: 160 GYFLQVGAYDSAEYAERQ------KGNLA----------MQGFEAKVTQREVNGTTKYRV 203 Query: 156 ----LVGIDDMKIINASIEENTVYITI-RI 180 +D+M + + ++ + V T+ R Sbjct: 204 RLGPFNSLDEMTAVRSRLQASGVESTVIRF 233 >gi|170741273|ref|YP_001769928.1| hypothetical protein M446_3084 [Methylobacterium sp. 4-46] gi|168195547|gb|ACA17494.1| conserved hypothetical protein [Methylobacterium sp. 4-46] Length = 233 Score = 34.9 bits (79), Expect = 8.8, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 11/122 (9%) Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93 + G P G + + + + +L + +L N +R + S Sbjct: 26 RAGETAPPPGPDAAEPELPPEELARLPSLDALTPQTDLAQFLRAGVPRALRNAALRRMWS 85 Query: 94 VYTDFDPKDFLNEARN-SYEAIVDSFFEGKVHAIEKLV-DSRVYQDFNDSLS---TRKSN 148 + +DF++EAR +++ V G V L+ V ++ R + Sbjct: 86 LDPA--IRDFVSEAREYAWDWNVP----GDVPGAGPLLPTDDVAAMVERVIAGEPARAAP 139 Query: 149 EK 150 Sbjct: 140 GH 141 >gi|38257056|ref|NP_940710.1| methyl-accepting chemotaxis protein [Pseudomonas syringae pv. syringae] gi|37723833|gb|AAR02159.1| methyl-accepting chemotaxis protein [Pseudomonas syringae pv. syringae] Length = 540 Score = 34.9 bits (79), Expect = 8.9, Method: Composition-based stats. Identities = 11/113 (9%), Positives = 40/113 (35%), Gaps = 19/113 (16%) Query: 111 YEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE 170 + ++ +G + ++ L+++ + + N ++S + ++ V ++ + A + Sbjct: 128 FSKLLTLSEQGNIESLRSLLNNELNDNHNAAISQLNLLAEKIEEETVNVNSS--VEAEYK 185 Query: 171 -----------------ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 I +R + + + + D + + D +V Sbjct: 186 NILNLTIFFVIAVFILGGLLALIIVRSIQKPLKITVDIADRIARGDLREPIEV 238 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.308 0.152 0.452 Lambda K H 0.267 0.0466 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,768,451,765 Number of Sequences: 14124377 Number of extensions: 212860959 Number of successful extensions: 688507 Number of sequences better than 10.0: 1284 Number of HSP's better than 10.0 without gapping: 1096 Number of HSP's successfully gapped in prelim test: 593 Number of HSP's that attempted gapping in prelim test: 685902 Number of HSP's gapped (non-prelim): 2001 length of query: 232 length of database: 4,842,793,630 effective HSP length: 134 effective length of query: 98 effective length of database: 2,950,127,112 effective search space: 289112456976 effective search space used: 289112456976 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 79 (34.9 bits)