BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780815|ref|YP_003065228.1| hypothetical protein CLIBASIA_03530 [Candidatus Liberibacter asiaticus str. psy62] (232 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|299133204|ref|ZP_07026399.1| import inner membrane translocase subunit Tim44 [Afipia sp. 1NLS2] gi|298593341|gb|EFI53541.1| import inner membrane translocase subunit Tim44 [Afipia sp. 1NLS2] Length = 234 Score = 199 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 60/232 (25%), Positives = 114/232 (49%), Gaps = 10/232 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 D ++F + F+FL+LR VLG++TG+E+P + + D + G + Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPYDRVTRDVAPTGNDNNVVRMPGTAVDQA 61 Query: 70 ----------NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + + L + + + F+ + F++ A+++YE IV +F Sbjct: 62 TLAPSADPVSPRERWKGIAAPDSELASGLDQVAAADPSFNAQHFISGAKSAYEMIVLAFA 121 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 G ++ L+ S VY F + R+ + V++ ID ++++A + + ++T+R Sbjct: 122 NGDRRTLKDLLSSDVYDGFEAVIKGREQQGEKVETKFASIDKAELVSAGVRDKLAHLTVR 181 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 V Q I+A+ DKD +I +PE V D+WTF R++ +PNW L+ T+ G Sbjct: 182 FVSQMITATRDKDGAVIDGNPEKLTDVTDVWTFSRDVSSRDPNWKLVGTESG 233 >gi|115522403|ref|YP_779314.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisA53] gi|115516350|gb|ABJ04334.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisA53] Length = 233 Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 60/232 (25%), Positives = 113/232 (48%), Gaps = 9/232 (3%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK- 68 D ++F + F+FL+LR VLG++TG+E+P + + ++ + Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGDERPPYDRAARDLLRGSQEGNVVPMPSPSIDPT 61 Query: 69 --------DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 D + + L + I + + FD + FL+ AR +YE IV +F Sbjct: 62 LAPSADVTPPSDRWKSVAAPDSPLEHGLNAIAAHDSGFDAQHFLSGARGAYEMIVLAFAN 121 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 G A++ L+ S VY F ++ R+ N+ ++ V ID +++ A + + + +T+R Sbjct: 122 GDRRALKDLLSSEVYDSFEAAIREREKNDHKTETRFVSIDKAELVTAEVRDRSAQLTVRF 181 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 V Q I+ + DK ++ +P+ + D+WTF R++ +PNW L+ T G+ Sbjct: 182 VSQMITVTRDKTGAIVDGNPDKVADITDVWTFARDVASRDPNWKLVGTGSGQ 233 >gi|158426224|ref|YP_001527516.1| mitochondrial import inner membrane translocase [Azorhizobium caulinodans ORS 571] gi|158333113|dbj|BAF90598.1| mitochondrial import inner membrane translocase [Azorhizobium caulinodans ORS 571] Length = 279 Score = 196 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 115/235 (48%), Gaps = 12/235 (5%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 D ++F + F+F++LR VLG++TG E+P F+ + + + + + Sbjct: 45 DIYTIIFLALAVFIFVRLRSVLGQRTGKERPPYDPFTPRPPAAPSSDNVVSLPERVGDAP 104 Query: 70 NLDSINELFP------------IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117 + P G+ L + + I ++ DFD K F+ A+++YE IV + Sbjct: 105 QRPTAPVSQPLPGTFRWKGVTEEGSPLAEALDQIAAIEPDFDAKHFVEGAKSAYEMIVLA 164 Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 F G ++ L+ V+ F ++S R+ + ++S V I+ +II AS+ T +T Sbjct: 165 FAAGDRRTLKDLLSKDVFDGFVAAISEREGRGETMESRFVAIEKAEIIEASVRGRTGQVT 224 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +R V + ISA+ +D ++ + V D+WTF R + +PNW L++T+ + Sbjct: 225 LRFVSKIISATRSRDGAVVDGSADTVADVTDVWTFARELGARDPNWKLVATEAAQ 279 >gi|75674306|ref|YP_316727.1| hypothetical protein Nwi_0107 [Nitrobacter winogradskyi Nb-255] gi|74419176|gb|ABA03375.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 234 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 115/232 (49%), Gaps = 10/232 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL------- 62 D ++F + F+FL+LR VLG++TG+E+P + + + +D + Sbjct: 2 DIYTIIFLALAVFIFLRLRSVLGQRTGSERPPYDRATREVLGGTQDNNVVPVPGTVINQS 61 Query: 63 ---GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 D + GT L + I + + FDP FL+ AR++YE IV +F Sbjct: 62 SAAPSADVGGAADRWKSVAEPGTPLALGLDAIAAQDSSFDPAHFLSGARSAYEMIVLAFA 121 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 G ++ L+ S VY+ F+ ++ R+ E+ ++ V ID +++I A + + +T+R Sbjct: 122 NGDRRTLKDLLSSDVYESFDAAIKDRERLEQKTETRFVSIDKVELIGAEVRDGAEQLTVR 181 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + Q IS + DK ++ +PE + D+WTF R+I +PNW L+ T Sbjct: 182 FISQMISVTRDKTGAIVDGNPEKISDITDVWTFARDISSRDPNWKLVGTGSA 233 >gi|90421823|ref|YP_530193.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisB18] gi|90103837|gb|ABD85874.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisB18] Length = 233 Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 9/231 (3%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDE---------RGII 60 D ++F + F+FL+LR VLG+KTGNE+P + V +D Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQKTGNERPPFDRAARDVVRGAQDNVVPLPGAVVDQAP 61 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 D + GT L + + IV+ + FDP+ FL AR +YE IV +F Sbjct: 62 QTPSADVVPPTDRWKGVAEPGTPLAQGLNAIVAQDSSFDPQHFLTGARGAYEMIVLAFAN 121 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 G A++ L+ VY F + R+ E+ ++ V ID ++++A + +T+R Sbjct: 122 GDRRALKDLLSPEVYDSFEAVIREREKQEQKTETRFVSIDKAELVSAEARDRAAQLTVRF 181 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 V Q I+ + DK ++ +P+ + D+WTF R++ +PNW L+ T Sbjct: 182 VSQMITVTRDKTGAIVDGNPDKVADITDVWTFARDVGSRDPNWKLVGTGSV 232 >gi|328545867|ref|YP_004305976.1| Import inner membrane translocase subunit Tim44 [polymorphum gilvum SL003B-26A1] gi|326415607|gb|ADZ72670.1| Import inner membrane translocase subunit Tim44 [Polymorphum gilvum SL003B-26A1] Length = 242 Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 78/242 (32%), Positives = 130/242 (53%), Gaps = 16/242 (6%) Query: 7 DSGDFLI--LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRD--------- 55 S F I ++F + FVF +LR VLGK+TGNE+P +S ++ Sbjct: 1 MSDIFDIYNIIFLALAIFVFFRLRSVLGKRTGNERPPFDPYSKPARDNRAPGGAEAGGVD 60 Query: 56 -----ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNS 110 + G G + ++++ P G+ LN +R I+SV F+P+ FL AR + Sbjct: 61 NVIPLPGKPVEAGAGDTERGAVVLDKVAPSGSALNAALRQILSVDRSFEPEQFLQGARAA 120 Query: 111 YEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE 170 YE IV +F EG ++ L+ VY F ++S R++ + ++S+ VGID I+ A+++ Sbjct: 121 YEMIVTAFAEGDRKTLKNLLSKEVYDGFVTAISEREARGETIESTFVGIDKADIVEAALK 180 Query: 171 ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + +T+R+ + ISA+ DKD ++ DP +V+DIWTF R+ +PNW L++T+ Sbjct: 181 GSVAQVTVRLQSELISATRDKDGHVVDGDPSRVTEVVDIWTFARDTTSRDPNWKLVATES 240 Query: 231 GE 232 E Sbjct: 241 AE 242 >gi|39933380|ref|NP_945656.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris CGA009] gi|39653005|emb|CAE25747.1| conserved unknown protein [Rhodopseudomonas palustris CGA009] Length = 289 Score = 195 bits (494), Expect = 5e-48, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 117/233 (50%), Gaps = 11/233 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64 D ++F + F+FL+LR VLG++TG+E+P + + + + + ++++ Sbjct: 56 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDNNVVSMPGTVIDQ 115 Query: 65 ------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 D + + L + I + FD + F+ A+++YE IV +F Sbjct: 116 APMAPNADVVPPSDRWKGIAEPDSELEHGLNAIAQNDSSFDAQHFITGAKSAYEMIVMAF 175 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 G ++ L+ S VY+ F+ ++ R+ N+ V++ V I+ ++I+A + + T +T+ Sbjct: 176 ANGDRRSLRDLLSSEVYESFDAAIKDREKNDLKVETRFVSIEKAELISAELRDRTAMLTL 235 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + V Q ISA+ DK ++ P+ + D+WTF R+ +PNW L+ T G Sbjct: 236 KFVSQMISATRDKTGAVVDGSPDKVVDITDVWTFARDTSSRDPNWKLVGTGSG 288 >gi|209883544|ref|YP_002287401.1| import inner membrane translocase, subunit Tim44 [Oligotropha carboxidovorans OM5] gi|209871740|gb|ACI91536.1| import inner membrane translocase, subunit Tim44 [Oligotropha carboxidovorans OM5] Length = 234 Score = 194 bits (492), Expect = 8e-48, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 113/232 (48%), Gaps = 10/232 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK- 68 D ++F + F+FL+LR VLG++TG+E+P + S D + G + Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRITRDMARSGNDNNVVKMPGTTIDQT 61 Query: 69 ---------DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 D + T L + ++ + F+ + F++ A+++YE IV +F Sbjct: 62 PLAPAADPIPAQDRWKGIAEPDTPLATGLDEVAAADPSFNAQHFVSGAKSAYEMIVQAFA 121 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 G ++ L+ + VY F + R+ + V++ ID +++A + + ++T+R Sbjct: 122 SGDRRMLKDLLSAEVYDGFEAVIKGREQRGEKVETRFASIDKAALVSAGVRDRIAHLTVR 181 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 V Q I+ + DKD +I +PE V D+WTF R++ +PNW L+ T+ G Sbjct: 182 FVSQMITVTRDKDGAVIDGNPEKLTDVTDVWTFSRDVSSRDPNWKLVGTESG 233 >gi|27375753|ref|NP_767282.1| hypothetical protein blr0642 [Bradyrhizobium japonicum USDA 110] gi|27348891|dbj|BAC45907.1| blr0642 [Bradyrhizobium japonicum USDA 110] Length = 235 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 11/233 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG---- 65 D ++F + F+FL+LR VLG++TGNE+P + + ++ ++T+ Sbjct: 2 DIYTIIFLALAVFIFLRLRSVLGQRTGNERPPFDHTAARNALGGAQDKNVVTMPGKVIDQ 61 Query: 66 -------KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + D L GT L + + IV + FDP+ F++ AR +YE IV +F Sbjct: 62 APLAPTVEPTPPSDRWKGLTEPGTALAQGLDAIVDKDSTFDPRHFISGARGAYEMIVLAF 121 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 G A+ L+ S VY+ F+ ++ R+ NE+ ++ V ID +++ A + + T +TI Sbjct: 122 ANGDRRALRDLLSSEVYESFDAAIKEREKNEQKTETRFVSIDKAELVGAELRDRTAQLTI 181 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 R V Q ISA+ DK ++ + + DIWTF R+I +PNW L+ T Sbjct: 182 RFVSQMISATRDKAGNIVDGSADTVADITDIWTFARDITSRDPNWKLVGTGSA 234 >gi|154245991|ref|YP_001416949.1| import inner membrane translocase subunit Tim44 [Xanthobacter autotrophicus Py2] gi|154160076|gb|ABS67292.1| import inner membrane translocase subunit Tim44 [Xanthobacter autotrophicus Py2] Length = 250 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 111/234 (47%), Gaps = 11/234 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK-- 67 D ++F + F+F++LR VLG++TG E+P +S + + + Sbjct: 17 DIYTIIFLALAVFIFVRLRSVLGQRTGRERPPYDPYSRDTARPPQPASDKVVPLPERPVS 76 Query: 68 ---------KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + G+ + +I + DFD + FL AR +YE IV +F Sbjct: 77 PPAASPVDEAPPAYRWEGVAQEGSATAAALDEIARIEPDFDARHFLTGARAAYEMIVTAF 136 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 G A++ L+ VY F +++ R+S + ++S V ++ ++ + ++ + + +T+ Sbjct: 137 AAGDRRALKDLLAKDVYDGFVSAIADRESRRETMESRFVAVEQAELQDVTVRDRSAQLTV 196 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 R V + IS + D ++ P+ V D+WTF R++ +PNW L++T+ + Sbjct: 197 RFVSKLISVTRGPDGAVVDGSPDTVADVTDVWTFARDLGTRDPNWKLVATEAAQ 250 >gi|91974901|ref|YP_567560.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisB5] gi|91681357|gb|ABE37659.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisB5] Length = 235 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 116/233 (49%), Gaps = 11/233 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64 D ++F + F+FL+LR VLG++TG+E+P + + + + + ++ + Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDNNVVPMPGTVIDQ 61 Query: 65 ------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 D + + L + ++ + FD FL A+++YE IV +F Sbjct: 62 SPTAPNADVVPPSDRWKGIAEPDSPLAHGLNAVLVQDSSFDANHFLTGAKSAYEMIVMAF 121 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 G A+ L+ + VY F+ ++ R+ NE+ ++ V ID +++ A + E+T +T+ Sbjct: 122 ANGDRRALRDLLSTEVYDSFDAAIKDREKNERKTETRFVAIDKAELLGAEVREHTAQLTV 181 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + V Q IS + DK ++ +P+ + D+WTF R+I +PNW L+ T G Sbjct: 182 KFVSQMISVTRDKAGAIVDGNPDKVADITDVWTFARDISSRDPNWKLVGTGSG 234 >gi|325291461|ref|YP_004277325.1| hypothetical protein AGROH133_02812 [Agrobacterium sp. H13-3] gi|325059314|gb|ADY63005.1| hypothetical protein AGROH133_02812 [Agrobacterium sp. H13-3] Length = 232 Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 84/232 (36%), Positives = 129/232 (55%), Gaps = 5/232 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG-- 63 M DF+ L F +FLQLR VLG++TGNEKP ++ + V + Sbjct: 1 MGFSDFITLFFLVAAVLIFLQLRSVLGRRTGNEKPPFDPYTPRDVAKGPVTDDNKVVTLP 60 Query: 64 ---KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 + + ++ + L P+ T LN +R++++ F PK+FLN AR +YE IV F + Sbjct: 61 KRSEAEDENRFAEADALAPVDTALNTSLRELMTKDPTFRPKEFLNGARMAYEMIVMGFAD 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 G ++ L+ V+ F ++S R+S + VKS+ VGI+ I A I ++ IT+RI Sbjct: 121 GDRKTLKNLLSKEVFDGFEAAISERESRGEVVKSTFVGIEKADITQAGIRDSEEQITLRI 180 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 V Q ISA+YDKD L+ DP+ +V DIWTF R++ +PNW LI+T+ + Sbjct: 181 VSQLISATYDKDGKLVDGDPDAVAEVDDIWTFSRDVRSRDPNWKLIATESEQ 232 >gi|146337371|ref|YP_001202419.1| hypothetical protein BRADO0204 [Bradyrhizobium sp. ORS278] gi|146190177|emb|CAL74169.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278] Length = 233 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 10/229 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGK----------YVFSKRDERGI 59 D ++F + F+FL+LR VLG++TG+E+ + V + Sbjct: 2 DIYTIIFLGLAVFIFLRLRSVLGQRTGSERTPFDRTARNAVGAPDNHVMPVPGAPLDPAG 61 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + G D + GT L + + I + FDP+ FL AR++YE IV +F Sbjct: 62 PSTGAADFGAPSDRWRGIAEPGTPLARGLDAIAANDASFDPRHFLTGARSAYEMIVLAFA 121 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 G A+ L+ S VY F+ + R+ NE+ ++ V ID +++NA + T +T+R Sbjct: 122 NGDRRALRDLLSSEVYDSFDAVIKDREKNEQKTETRFVSIDTAELVNAEARDRTAQLTVR 181 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 V Q IS + DK ++ +P+ + DIWTF R+ +PNW L+ T Sbjct: 182 FVSQMISVTRDKTGNIVDGNPDKVADITDIWTFARDTGSRDPNWKLVGT 230 >gi|85714085|ref|ZP_01045074.1| hypothetical protein NB311A_08013 [Nitrobacter sp. Nb-311A] gi|85699211|gb|EAQ37079.1| hypothetical protein NB311A_08013 [Nitrobacter sp. Nb-311A] Length = 234 Score = 192 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 117/232 (50%), Gaps = 10/232 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL------- 62 D ++F + F+FL+LR VLG++TG+E+P + + + +D+ + Sbjct: 2 DIYTIIFLALAVFIFLRLRSVLGQRTGSERPPYDGATREILRGAQDKNVVPVPGTVINQS 61 Query: 63 ---GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + D +L GT L + I + + FDP FL+ AR++YE IV +F Sbjct: 62 SATPTADVGPSADRWKDLTEPGTALALGLDAIAAQDSSFDPGHFLSGARSAYEMIVLAFA 121 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 G ++ L+ S VY+ F+ ++ R+ E+ ++ V ID +++I A + + +T+R Sbjct: 122 NGDRRTLKDLLSSDVYESFDAAIKDRERLEQKTETRFVSIDKVELIGAELRDGAEQLTVR 181 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + Q IS + DK ++ +PE + D+WTF R I +PNW L+ T Sbjct: 182 FISQMISVTRDKTGAIVDGNPERISDITDVWTFAREISSRDPNWKLVGTGSA 233 >gi|92115749|ref|YP_575478.1| import inner membrane translocase, subunit Tim44 [Nitrobacter hamburgensis X14] gi|91798643|gb|ABE61018.1| import inner membrane translocase, subunit Tim44 [Nitrobacter hamburgensis X14] Length = 234 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 10/233 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII--------- 60 D ++F + F+FL+LR VLG++TG+E+P + + + +D+ + Sbjct: 2 DIYTIIFLALAVFIFLRLRSVLGQRTGSERPPYDRATREVLHGTQDKNVVPMAGPVIDQA 61 Query: 61 -TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + D L GT L + I + + FDPK F++ AR++YE IV +F Sbjct: 62 SSAPTADAASTPDRWKNLAEPGTPLALGLDAIAAHDSSFDPKHFISGARSAYEMIVLAFA 121 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 G ++ L+ S VY+ F+ ++ R+ E+ ++ V ID +++I A + ++ +T+R Sbjct: 122 NGDRRTLKDLLSSDVYESFDAAIKDREKLEQKTETRFVSIDKVELIGAELRDSAEQLTVR 181 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + Q IS + DK ++ +PE + D+WTF R+IP +PNW L+ T + Sbjct: 182 FISQMISMTRDKTGAIVDGNPEKISDITDVWTFARDIPSRDPNWKLVGTGSTD 234 >gi|222147023|ref|YP_002547980.1| Membrane associated transporter protein [Agrobacterium vitis S4] gi|221734013|gb|ACM34976.1| Membrane associated transporter protein [Agrobacterium vitis S4] Length = 232 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 85/232 (36%), Positives = 129/232 (55%), Gaps = 5/232 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M S DF+ L F +F QLR VLG++TGNEKP F+G+ + + Sbjct: 1 MGSNDFVTLFFLVAAVLIFWQLRSVLGRRTGNEKPPKDPFAGRPDAASPAAEDARVVTLP 60 Query: 66 KKKDN-----LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 ++ + +I+ P GT LN+ +R +V V F PK+FLN AR +YE IV +F Sbjct: 61 RRDEADGEERQTAIDAYAPAGTPLNQQLRQVVEVDPSFVPKEFLNGARMAYEMIVTAFAA 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 G +++ L+ VY F+ +++ R+ + +KS+ VGID +I +A + + V IT+R+ Sbjct: 121 GDRKSLKDLLSREVYDGFDAAITEREQRGEVMKSTFVGIDKAEITSAEVRDQEVQITVRL 180 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 V Q ISA+YD +I D E G V DIWTF R+ +PNW LI+T+ + Sbjct: 181 VSQLISATYDSQGAVIEGDAESVGDVNDIWTFARDTRSRDPNWKLIATESDQ 232 >gi|148251774|ref|YP_001236359.1| hypothetical protein BBta_0156 [Bradyrhizobium sp. BTAi1] gi|146403947|gb|ABQ32453.1| hypothetical protein BBta_0156 [Bradyrhizobium sp. BTAi1] Length = 233 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 10/229 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 D ++F + F+F++LR VLG++TG+E+ + V D + G Sbjct: 2 DIYTIIFLALAVFIFVRLRAVLGQRTGSERTPFDRAARNAVQGAPDNHVMPVPGAPLDPA 61 Query: 70 ----------NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 D + GT L + + +V+ FDP+ FL AR++YE IV +F Sbjct: 62 VATAGAEPGVPSDRWRGVAEPGTPLARGLDAVVANDPSFDPRHFLTGARSAYEMIVLAFA 121 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 G A+ L+ S VY F+ + R+ +E+ ++ V ID ++++A + + T +T+R Sbjct: 122 NGDRRALRDLLSSEVYDSFDAVIKDREKHEQKTETRFVSIDTAELVSADLRDRTAQLTVR 181 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 V Q IS + DK ++ +P+ + DIWTF R+ +PNW L+ T Sbjct: 182 FVSQMISVTRDKMGNIVDGNPDKVADITDIWTFARDTGSRDPNWKLVGT 230 >gi|260467422|ref|ZP_05813593.1| import inner membrane translocase subunit Tim44 [Mesorhizobium opportunistum WSM2075] gi|259028818|gb|EEW30123.1| import inner membrane translocase subunit Tim44 [Mesorhizobium opportunistum WSM2075] Length = 236 Score = 191 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 71/236 (30%), Positives = 121/236 (51%), Gaps = 9/236 (3%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT---- 61 M DF + F +F QLR VLG++TG+E+P ++ K + Sbjct: 1 MGFFDFGTIFFLIAAVVIFFQLRNVLGRRTGSERPPFDPYTAARTGDKDAAQKPENVVSL 60 Query: 62 -----LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116 G+ D +I+ T LNK +R I FDPK F++ A+ +YE IV Sbjct: 61 PRKRLPGEPAAPDAYAAIDAFAKPDTDLNKGLRTIKDNDPSFDPKGFVDGAKMAYEMIVM 120 Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 ++ +G ++ L+ V+ F ++ R++ + ++SS VGID I++A ++ ++ Sbjct: 121 AYADGDRKTLKNLLSREVFDGFVAAIGEREAKSEKIQSSFVGIDKADIVSAEMKGGEAHV 180 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 T+RI+ + ISA+ DK +I DPE +V D+WTF R+ +PNW L++T+ + Sbjct: 181 TLRIISELISATRDKAGTVIDGDPETVAEVKDVWTFARDTRSRDPNWKLVATEEED 236 >gi|218661852|ref|ZP_03517782.1| import inner membrane translocase subunit Tim44 [Rhizobium etli IE4771] Length = 234 Score = 191 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 126/231 (54%), Gaps = 6/231 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG------I 59 M S DF+ L F +F QLR VLG++TGNEKP ++ + Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 G+ +D +I+ + GT LN+ +R + F+PK+FLN AR +YE IV ++ Sbjct: 61 RRDATGEDEDRFAAIDAVAAPGTPLNESLRALNKADPSFNPKEFLNGARMAYEMIVMAYA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY F+ ++ R+S + VKS+ VGID +I +A + + IT+R Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGERESRGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 IV Q ISA+YDK + LI D E +V D+WTF R+ +PNW L++T+ Sbjct: 181 IVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATES 231 >gi|209966267|ref|YP_002299182.1| hypothetical protein RC1_3002 [Rhodospirillum centenum SW] gi|209959733|gb|ACJ00370.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 230 Score = 191 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 103/230 (44%), Gaps = 2/230 (0%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER-GIITL 62 + F IL+F + F+ +LR VLG++ G E+ F+ + + Sbjct: 1 MGEGFYFFDILIFGMVAAFLVYRLRSVLGRRHGEERQRPNPFTPPPKAGQAPAPAESDNV 60 Query: 63 GKGKKKDNLDSINELFPIGT-RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 + G L + +R I + F+ K FL A+ ++E IV +F +G Sbjct: 61 VPLPDRGRPPEAPLPVETGPISLEEGLRQIRAADPTFNEKHFLQGAKAAFEMIVKAFADG 120 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 + L+ VY F +++ R++ + ++ + + + + A ++ +TIR + Sbjct: 121 DTPTLRPLLADDVYDGFAEAIRKRQAAGETRETRITAFESVDLKEARMDGRHAMVTIRFI 180 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + + + ++ DP+ +V+DIWTF RN +PNW+L+ T++ Sbjct: 181 THQVDCTVNAAGDVVDGDPDEAIEVVDIWTFSRNTRSPDPNWLLVETRVP 230 >gi|86747526|ref|YP_484022.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris HaA2] gi|86570554|gb|ABD05111.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris HaA2] Length = 235 Score = 190 bits (483), Expect = 9e-47, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 114/230 (49%), Gaps = 11/230 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64 D ++F + F+FL+LR VLG++TG+E+P + + + + + ++++ Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDTNVVSMPGSVIDQ 61 Query: 65 ------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 D + + L + + + + FD FL+ A+ +YE IV +F Sbjct: 62 SPIAPSADVVPPSDRWKGIAEPDSPLEHGLNAVFTQDSSFDANHFLSGAKGAYEMIVMAF 121 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 G A++ L+ S VY+ F ++ R+ NE ++ V I+ +++ A + ++ +T+ Sbjct: 122 ANGDRRALKDLLSSEVYESFEAAIKDREKNELKTETRFVAIEKAELLGAEVRDHVAQLTV 181 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + V Q IS + DK ++ P+ + D+WTF R+I +PNW L+ T Sbjct: 182 KFVSQMISVTRDKAGAVVDGSPDKVADITDVWTFARDISSRDPNWKLVGT 231 >gi|144900161|emb|CAM77025.1| Mitochondrial import inner membrane translocase, subunit Tim44 [Magnetospirillum gryphiswaldense MSR-1] Length = 243 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 105/228 (46%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 + I+ FA + F+ L+LR VLGK+TGNE+P + K D +T Sbjct: 1 MNDGFHALDIVFFAVVAVFLILRLRSVLGKRTGNEEPPRWTRTPKDDGETADNVIDLTRA 60 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 + + D ++ L + I + F FL+ AR ++E IV +F G Sbjct: 61 RRPVEAEPDVTADVAATAGPLARGEAAIRARDPSFSNTGFLSGARMAFEMIVGAFAAGDK 120 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 A+ L+ +VY+ F D++ R + + + ++GI +II A + +T+R V + Sbjct: 121 KALRPLLADQVYKPFCDAIDARARAGEELSTEIMGIKSAEIIEAIMVGTVAQVTVRFVSE 180 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 I+ D D ++ DP V D WTF R+ +PNW L +T+ Sbjct: 181 QINVIKDLDGRIVEGDPSRIVPVTDEWTFSRDTRSKDPNWHLSATRAV 228 >gi|319780601|ref|YP_004140077.1| import inner membrane translocase subunit Tim44 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166489|gb|ADV10027.1| import inner membrane translocase subunit Tim44 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 235 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 119/235 (50%), Gaps = 8/235 (3%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT---- 61 M DF + F +F QLR VLG++TG+E+P +S K + Sbjct: 1 MGFFDFGTIFFLIAAVVIFFQLRNVLGRRTGSERPPFDPYSAARTGDKDAAQKSENVVSL 60 Query: 62 ----LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117 D +I+ T LNK +R I F+PK F++ A+ +YE IV + Sbjct: 61 PRKRPPGEPAPDAYAAIDAFAKPDTDLNKGLRTIKDNDPSFEPKGFVDGAKMAYEMIVMA 120 Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 + +G ++ L+ VY F ++ R++ + ++SS VGID I++A ++ ++T Sbjct: 121 YADGDRKTLKNLLSREVYDGFVAAIGEREAKAEKIQSSFVGIDKADIVSAEMKGGEAHVT 180 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +RI+ + ISA+ DK +I DPE +V D+WTF R+ +PNW L++T+ + Sbjct: 181 LRIISELISATRDKAGAVIDGDPETVAEVKDVWTFARDTRSRDPNWKLVATEEED 235 >gi|84501205|ref|ZP_00999410.1| transporter, Tim44 family protein [Oceanicola batsensis HTCC2597] gi|84390496|gb|EAQ02984.1| transporter, Tim44 family protein [Oceanicola batsensis HTCC2597] Length = 220 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 9/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+LR VLG + G EK + + + G Sbjct: 1 MNSPIIQLLVLAGIAVFLILRLRSVLGTREGFEKTP---VTRSGPSNSEARGNFEVIEGG 57 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D +D + P + + + + F +FL AR +YE I+ F G++ Sbjct: 58 PDPDIVDHV----PEDSPAAGALARMKQLEPSFSVGEFLGGARGAYEMILMGFERGEMAE 113 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183 I+ + VY+ F ++ R + +++ VG+ ++++++A +++ +T+R VGQ Sbjct: 114 IKPFLSEEVYESFAHVVNERDAKGLTIEADFVGVKELQLVDAELDDTSREGELTVRFVGQ 173 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 A D+ +I DP+ D+WTF R + +PNW L++T Sbjct: 174 LTFAVRDRAGEVIEGDPKSIKTQRDVWTFARKMGSDDPNWQLVAT 218 >gi|316931716|ref|YP_004106698.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris DX-1] gi|315599430|gb|ADU41965.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris DX-1] Length = 258 Score = 190 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 64/233 (27%), Positives = 119/233 (51%), Gaps = 11/233 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64 D ++F + F+FL+LR VLG++TGNE+P + + + S + + +I++ Sbjct: 25 DIYTIIFLALAVFIFLRLRNVLGQRTGNERPPFDRAAARDMISGKQDNNVISMPGTVIDQ 84 Query: 65 ------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 D + + L + I + FD + F++ A+++YE IV +F Sbjct: 85 APIAPNADVVPPSDRWKGIAEPDSELEHGLNAIAQHDSSFDARHFVDGAKSAYEMIVMAF 144 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 G ++ L+ S VY+ F+ ++ R+ N+ V+S V I+ ++I+A + + T +T+ Sbjct: 145 ANGDRRSLRDLLSSEVYESFDAAIKDREKNDLKVESRFVAIEKAELISAELRDRTAMLTL 204 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + V Q ISA+ DK ++ P+ + D+WTF R+ +PNW L+ T G Sbjct: 205 KFVSQMISATRDKTGAVVDGSPDKVTDITDVWTFARDTSSRDPNWKLVGTGSG 257 >gi|218673282|ref|ZP_03522951.1| import inner membrane translocase subunit Tim44 [Rhizobium etli GR56] Length = 234 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 125/231 (54%), Gaps = 6/231 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG------I 59 M S DF+ L F +F QLR VLG++TGNEKP ++ + Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + +D +I+ + GT LN+ +R + F+PK+FLN AR +YE IV ++ Sbjct: 61 RRDATAEDEDRFAAIDAVAAPGTPLNESLRALNKADPSFNPKEFLNGARMAYEMIVMAYA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY F+ ++ R++ + VKS+ VGID +I +A + + IT+R Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 IV Q ISA+YDK + LI D E +V D+WTF R+ +PNW L++T+ Sbjct: 181 IVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATES 231 >gi|192288736|ref|YP_001989341.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris TIE-1] gi|192282485|gb|ACE98865.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris TIE-1] Length = 235 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 117/233 (50%), Gaps = 11/233 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64 D ++F + F+FL+LR VLG++TG+E+P + + + + + ++++ Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDNNVVSMPGTVIDQ 61 Query: 65 ------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 D + + L + I + FD + F+ A+++YE IV +F Sbjct: 62 APMAPNADVVPPSDRWKGIAEPDSELEHGLNAIAQNDSSFDAQHFITGAKSAYEMIVMAF 121 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 G ++ L+ S VY+ F+ ++ R+ N+ V++ V I+ ++I+A + + T +T+ Sbjct: 122 ANGDRRSLRDLLSSEVYESFDAAIKDREKNDLKVETRFVSIEKAELISAELRDRTAMLTL 181 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + V Q ISA+ DK ++ P+ + D+WTF R+ +PNW L+ T G Sbjct: 182 KFVSQMISATRDKTGAVVDGSPDKVVDITDVWTFARDTSSRDPNWKLVGTGSG 234 >gi|312115344|ref|YP_004012940.1| import inner membrane translocase subunit Tim44 [Rhodomicrobium vannielii ATCC 17100] gi|311220473|gb|ADP71841.1| import inner membrane translocase subunit Tim44 [Rhodomicrobium vannielii ATCC 17100] Length = 233 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 110/233 (47%), Gaps = 7/233 (3%) Query: 6 MDSGDFLI--LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFS-----KRDERG 58 M S F + +L + +FL+LR VLG++TG+E+ ++ + Sbjct: 1 MTSEIFDLTNILLLAVAVAIFLRLRSVLGRRTGDEETRLDNYARDAAPTRDNVVPLPRAE 60 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 G ++D P + + +R I + FD F+N A+ +YE+I+ ++ Sbjct: 61 PRPGGAPSAGPSVDERLGNVPADSAVRAPLRQIATSDPSFDTASFVNGAKIAYESIITAY 120 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 +G + L+ V+ FN ++ R+++ + V+ +GI +I+ A + + + Sbjct: 121 AKGDRETLRHLLAPEVFDSFNVVINDREASGETVEFHFIGISSSEIVEAQLLGRVAQVKV 180 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 R V ++A+ DK ++ D + +V DIWTF R++ NPNW L++T Sbjct: 181 RFVSDLVTATRDKHGEVVDGDDKAVRQVTDIWTFSRDVSSPNPNWQLVATDAA 233 >gi|222084209|ref|YP_002542735.1| translocase transmembrane protein [Agrobacterium radiobacter K84] gi|221721657|gb|ACM24813.1| translocase transmembrane protein [Agrobacterium radiobacter K84] Length = 233 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 129/233 (55%), Gaps = 6/233 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI------ 59 M + DF+ + F +F QLR VLG++TGNEKP + + + Sbjct: 1 MGANDFVTIFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYGSPDQATGPNAPDAGKVVTL 60 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + +D +I+ P GT LN +R++ F PK+F+N AR +YE IV +F Sbjct: 61 PRRDATEDEDRFAAIDAFTPAGTPLNDSLRELNKADPSFSPKEFVNGARMAYEMIVMAFA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G +A++ L+ VY+ F+ +++ R++ + VKS+ VGID I++A +++ +T+R Sbjct: 121 DGDRNALKGLLSREVYEGFDAAITDRETKGEKVKSTFVGIDKADIVSAEMKDTEATVTMR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 IV Q ISA+YDK LI D E ++ D+WTF R+ +PNW L++T+ + Sbjct: 181 IVSQMISATYDKAGTLIDGDAETVAEISDVWTFARDSRSRDPNWKLVATESEQ 233 >gi|110635813|ref|YP_676021.1| import inner membrane translocase, subunit Tim44 [Mesorhizobium sp. BNC1] gi|110286797|gb|ABG64856.1| import inner membrane translocase, subunit Tim44 [Chelativorans sp. BNC1] Length = 235 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 8/235 (3%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT---- 61 M+ DF + F +F QLR VLG++TG+E+P ++ E+ + Sbjct: 1 MEFFDFGTIFFLVAAVVIFFQLRNVLGRRTGSERPPFDPYTAGRSRPAEAEKSVKNDTVV 60 Query: 62 ----LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117 ++ + I+++ GT LN+ +R I FDP F++ A+ +YE IV + Sbjct: 61 ALPRRKGLVDEERYNIIDKVAQPGTELNRGLRAIKDADPSFDPNTFVDGAKLAYEMIVMA 120 Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 F +G ++ L+ VY+ F ++ R+ + ++SS VGID II+A ++ + ++T Sbjct: 121 FADGDRRTLKNLLSREVYEGFVSAIDERERRSEKIESSFVGIDKATIISAEMKGSEAHVT 180 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +RIV + ISA+ D +I DPE +V DIWTF R+ +PNW L++T+ E Sbjct: 181 LRIVSELISATRDSGGSIIDGDPETVAEVKDIWTFARDTRSRDPNWKLVATEAEE 235 >gi|298293768|ref|YP_003695707.1| import inner membrane translocase subunit Tim44 [Starkeya novella DSM 506] gi|296930279|gb|ADH91088.1| import inner membrane translocase subunit Tim44 [Starkeya novella DSM 506] Length = 241 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 114/238 (47%), Gaps = 16/238 (6%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER------------ 57 D ++F + F+F++LR VLG++TG E+P +S + Sbjct: 3 DIYTIIFLALAVFIFIRLRSVLGQRTGRERPPYDPYSRRDPAKAPAGPADKVVSFPGAAE 62 Query: 58 ----GIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 + + +G+ + + I + FD + FL AR +YE Sbjct: 63 KPSVPEPAEATESDEPAPARWAGVAEVGSAVANGLDAIAAQERGFDAQHFLTGARAAYEM 122 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 IV +F G A+++L+ V++ F+ +++ R+ + +++ VGI+ ++II A ++ + Sbjct: 123 IVVAFANGDRAALKELLAREVFEGFSAAIAEREQRGEKMETQFVGIEKVEIIEAGVKGRS 182 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 +T+R + Q IS + DK +I DPE V D+WTF R + +PNW L++T+ Sbjct: 183 AQMTLRFLSQLISVTRDKAGRVIDGDPEQVADVTDVWTFARELGTRDPNWKLVATEAA 240 >gi|86355677|ref|YP_467569.1| putative translocase transmembrane protein [Rhizobium etli CFN 42] gi|86279779|gb|ABC88842.1| putative translocase transmembrane protein [Rhizobium etli CFN 42] Length = 234 Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 121/231 (52%), Gaps = 6/231 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG------I 59 M S DF+ L F +F QLR VLG++TGNEKP +S + Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYSPREAAPPEAAEAGKVVTLP 60 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 +D +I+ GT LN+ +R + F PK+FLN AR +YE +V ++ Sbjct: 61 RRDATADDEDRFSAIDAFAAPGTPLNESLRALNKADPSFSPKEFLNGARMAYEMVVMAYA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY F ++ R++ + VKS+ VGID +I +A + + IT+R Sbjct: 121 DGDRKTLKSLLSREVYDGFEAAIGEREARGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 IV Q ISA+YDK + LI D E +V D+WTF R+ +PNW L++T+ Sbjct: 181 IVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATES 231 >gi|116249774|ref|YP_765612.1| hypothetical protein RL0008 [Rhizobium leguminosarum bv. viciae 3841] gi|115254422|emb|CAK05496.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 234 Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 79/231 (34%), Positives = 123/231 (53%), Gaps = 6/231 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG------I 59 M S DF+ L F +F QLR VLG++TGNEKP ++ + Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + +D +I+ GT LN+ +R + F PK+FLN AR +YE IV ++ Sbjct: 61 RRDATTEDEDRFAAIDAFAAPGTPLNESLRALNKADPAFSPKEFLNGARMAYEMIVMAYA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY F+ ++ R++ + VKS+ VGID +I +A + + IT+R Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 I Q ISA+YDK ++LI D E +V D+WTF R+ +PNW L++T+ Sbjct: 181 IASQLISATYDKADVLIEGDAENVAEVNDVWTFARDTRSRDPNWKLVATES 231 >gi|209551513|ref|YP_002283430.1| import inner membrane translocase subunit Tim44 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537269|gb|ACI57204.1| import inner membrane translocase subunit Tim44 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 234 Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 6/231 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG------I 59 M S DF+ L F +F QLR VLG++TGNEKP ++ + Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + +D +I+ GT LN+ +R + F PK+FLN AR +YE IV ++ Sbjct: 61 RRDATTEDEDRFAAIDAFAAPGTPLNESLRALNKADPAFSPKEFLNGARMAYEMIVMAYA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY F+ ++ R++ + VKS+ VGID +I +A + + IT+R Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGERETRGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 I+ Q ISA+YDK ++LI D E +V D+WTF R+ +PNW L++T+ Sbjct: 181 IISQLISATYDKADVLIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATES 231 >gi|118591473|ref|ZP_01548870.1| Calcium-binding EF-hand [Stappia aggregata IAM 12614] gi|118435801|gb|EAV42445.1| Calcium-binding EF-hand [Stappia aggregata IAM 12614] Length = 230 Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 127/229 (55%), Gaps = 14/229 (6%) Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF----SKRDERGIITLGKGKKKDNLDS 73 + F+ +LR VLGK+TGNE+P +S + D+ +I L +D Sbjct: 2 GLAVFILFRLRSVLGKRTGNERPPFDPYSKPDQQRDRKNGNDQDNVIPLPNQPMQDAETV 61 Query: 74 ----------INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 I+++ P G+ LN ++ I+SV F+P+ FL AR +YE IV +F +G Sbjct: 62 EDTGRGGDVVIDKVAPAGSALNSALKQILSVDRSFEPEPFLEGARAAYEMIVMAFADGDK 121 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 A++ L+ VY+ F ++ R+ + ++S+ VGID +I+ A+++ +T +T++I Q Sbjct: 122 KALKNLLSREVYEGFVAAIDEREKRGETIESTFVGIDKAEIVEAALKNSTAQVTVKIHSQ 181 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ISA+ DK+ ++ DP +VIDIWTF R+ +PNW L++T+ E Sbjct: 182 LISATRDKNGEVVDGDPAKVSEVIDIWTFARDTTSRDPNWKLVATESAE 230 >gi|83313642|ref|YP_423906.1| hypothetical protein amb4543 [Magnetospirillum magneticum AMB-1] gi|82948483|dbj|BAE53347.1| Uncharacterized protein [Magnetospirillum magneticum AMB-1] Length = 281 Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats. Identities = 60/229 (26%), Positives = 109/229 (47%), Gaps = 11/229 (4%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 + I+ FA + F+ L+LR VLGK+TG E+P + + Sbjct: 63 MNDGYHFLDIVFFAMVAAFLVLRLRSVLGKRTGAERPPEQWTPPEAAA-----------D 111 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 ++ P T + + + I + FD FL A+ ++E IV +F G Sbjct: 112 NVVDLQSVRRSASEPPAETPMGQGLAAIRAADRGFDLDGFLGGAKAAFEMIVIAFAHGDK 171 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 ++ L+ VY+ F+D++ R+ + + +++ LVGI +++ A ++ +TIR V + Sbjct: 172 ATLQPLLAPDVYRHFSDAIDARRQHGETLQTELVGIRTAELVEAGMDGRFAALTIRFVSE 231 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ++A D ++ +PE VID+WTF R+ ++PNW L +T E Sbjct: 232 QVNALRDAKGEVVEGNPERVIDVIDLWTFRRDTRSADPNWALAATHTPE 280 >gi|170739669|ref|YP_001768324.1| import inner membrane translocase subunit Tim44 [Methylobacterium sp. 4-46] gi|168193943|gb|ACA15890.1| import inner membrane translocase subunit Tim44 [Methylobacterium sp. 4-46] Length = 238 Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats. Identities = 56/235 (23%), Positives = 108/235 (45%), Gaps = 9/235 (3%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL---- 62 DS D L+F + FV +LR VLG+KTG+E+P + R + Sbjct: 4 DSLDLTTLIFLGLAVFVIWKLRAVLGQKTGHERPPFNPLVRRREEPPPAAREDNVVRLPA 63 Query: 63 -----GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117 + + + + + ++ FDP+ F + A+ +YE IV + Sbjct: 64 GGDRTAAAPVATVPRNWKGVVEPNSAAARGLDLVLQQEPGFDPRAFTDGAKIAYETIVMA 123 Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 F +G ++ L+ V + F ++ R+ ++V+++ V ID +I+ + IT Sbjct: 124 FAKGDRRTLKSLLSREVAEGFERAIQARERAGQSVETTFVSIDRAEIVGVDLRNRVAQIT 183 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +R + + I+A+ + ++ P+ V D+WTF R + +PNW L++T+ G+ Sbjct: 184 VRYLSKLITATRNAQGAVVDGSPDTVVDVTDVWTFARTLGSRDPNWQLVATEAGQ 238 >gi|241206951|ref|YP_002978047.1| import inner membrane translocase subunit Tim44 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860841|gb|ACS58508.1| import inner membrane translocase subunit Tim44 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 234 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 79/231 (34%), Positives = 123/231 (53%), Gaps = 6/231 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG------I 59 M S DF+ L F +F QLR VLG++TGNEKP ++ + Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + +D +I+ GT LN+ +R + F PK+FLN AR +YE IV ++ Sbjct: 61 RRDATTEDEDRFAAIDAFAAPGTPLNESLRALNKADPAFTPKEFLNGARMAYEMIVMAYA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY F+ ++ R++ + VKS+ VGID +I +A + + IT+R Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 I Q ISA+YDK ++LI D E +V D+WTF R+ +PNW L++T+ Sbjct: 181 IASQLISATYDKADVLIEGDAENVAEVNDVWTFARDTRSRDPNWKLVATES 231 >gi|227823867|ref|YP_002827840.1| putative import inner membrane translocase, subunit Tim44 [Sinorhizobium fredii NGR234] gi|227342869|gb|ACP27087.1| putative import inner membrane translocase, subunit Tim44 [Sinorhizobium fredii NGR234] Length = 233 Score = 187 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 123/231 (53%), Gaps = 6/231 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG-- 63 M S DF+ F +FLQLR VLG++TGNE+P +S + + Sbjct: 1 MGSFDFITFFFLIAAVVIFLQLRSVLGRRTGNERPPFDPYSPREAQGPEARDNGKVVQLP 60 Query: 64 ----KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + +I+ GT LN +R + F P +FLN A+ +YE IV +F Sbjct: 61 RRESTAEDESRYAAIDGFSKPGTPLNGQLRALSDADPSFQPAEFLNGAKMAYEMIVMAFA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY+ F +++ R++ + VKS+ VGI+ I++A +++ +T+R Sbjct: 121 DGDRKTLKGLLSREVYEGFETAIAERETRGEVVKSTFVGIEKADIVHAELKDAEENVTVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 I+ Q ISA+YDK LI D + +V D+WTF R+I +PNW LI+T+ Sbjct: 181 IISQLISATYDKQGKLIDGDADSVAEVNDLWTFARDIRSRDPNWKLIATES 231 >gi|220921009|ref|YP_002496310.1| import inner membrane translocase subunit Tim44 [Methylobacterium nodulans ORS 2060] gi|219945615|gb|ACL56007.1| import inner membrane translocase subunit Tim44 [Methylobacterium nodulans ORS 2060] Length = 241 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 13/239 (5%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG-------- 58 DS D L+F + FV +LR VLG+KTGNE+P + R Sbjct: 3 DSLDLTTLIFLGLAVFVIWKLRSVLGQKTGNERPPFNPLLRRREEPPPAPREGGDNVVRL 62 Query: 59 -----IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 + + + + + ++ FDP+ F + A+ +YE Sbjct: 63 PGAGADRGAAAPVAATVPRNWKGVVEPNSPAARGLDLVLQQEPSFDPRAFTDGAKVAYET 122 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 IV +F +G ++ L+ V F ++ R+ + V+++ V ID +I+ + Sbjct: 123 IVMAFAKGDRKTLKSLLSREVADGFERAIQARERAGQTVETTFVSIDRAEIVGVDVRNRV 182 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 IT+R + + I+A+ + ++ P+ V D+WTF R + +PNW L++T+ G+ Sbjct: 183 AQITVRFLSKLITATRNPQGAVVDGSPDTVVDVTDVWTFARTLGSRDPNWQLVATEAGQ 241 >gi|126463660|ref|YP_001044774.1| import inner membrane translocase, subunit Tim44 [Rhodobacter sphaeroides ATCC 17029] gi|332559713|ref|ZP_08414035.1| import inner membrane translocase, subunit Tim44 [Rhodobacter sphaeroides WS8N] gi|126105324|gb|ABN78002.1| import inner membrane translocase, subunit Tim44 [Rhodobacter sphaeroides ATCC 17029] gi|332277425|gb|EGJ22740.1| import inner membrane translocase, subunit Tim44 [Rhodobacter sphaeroides WS8N] Length = 219 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M S +L+ A I F+ ++L+ VLG + G EKP K R R + G Sbjct: 1 MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPAVPLEDPKP----RTRRDFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D +D + + G+ K + + F +FL AR +YE IV +F +G++ Sbjct: 57 PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLTGARGAYEMIVMAFEKGELEQ 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQ 183 I + V++ F +++ R++ +V+++ +G+ ++ I AS + +T + +R VG+ Sbjct: 113 IRPFLSPDVFESFEEAVKAREAEGLSVEATFLGLREIDIHEASFDRDTRVGQVAVRFVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S D+ +I P + D+WTF R + ++PNW L++T Sbjct: 173 LTSVVRDRTGQVIEGSPTEVKRQRDVWTFERRMGANDPNWQLVAT 217 >gi|77464817|ref|YP_354321.1| hypothetical protein RSP_1239 [Rhodobacter sphaeroides 2.4.1] gi|77389235|gb|ABA80420.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1] Length = 219 Score = 186 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 61/225 (27%), Positives = 112/225 (49%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M S +L+ A I F+ ++L+ VLG + G EKP K R R + G Sbjct: 1 MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPAVPLEDPKP----RTRRDFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D +D + + G+ K + + F +FL AR +YE IV +F +G++ Sbjct: 57 PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLTGARGAYEMIVMAFEKGELEQ 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQ 183 I + S V++ F +++ R++ +V+++ +G+ ++ I AS + +T + +R VG+ Sbjct: 113 IRPFLSSDVFESFEEAVKAREAEGLSVEATFLGLREIDIHEASFDRDTRVGQVAVRFVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S D+ +I P + D+WTF R + ++PNW L++T Sbjct: 173 LTSVVRDRTGQVIEGSPTEVKRQRDVWTFERRMGANDPNWQLVAT 217 >gi|163797060|ref|ZP_02191015.1| hypothetical protein BAL199_11141 [alpha proteobacterium BAL199] gi|159177576|gb|EDP62129.1| hypothetical protein BAL199_11141 [alpha proteobacterium BAL199] Length = 222 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 55/224 (24%), Positives = 107/224 (47%), Gaps = 4/224 (1%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 I+L A + FV +LR VLG++TG+E+ + F+ + + + Sbjct: 2 PYLDIILLAMLAGFVIFKLRSVLGRRTGHERRPTDPFAESPETNDNGNIVRLPDRSAESV 61 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 D D G+ + + I FD + FL A++++ IV++F +G V + Sbjct: 62 DGSDDDV----PGSSMAAGIMQIKLADDGFDERQFLQGAKSAFAMIVEAFAKGDVDGLRP 117 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L+ +Y F ++ + + ++++V I ++ AS+E + +T+ V + + + Sbjct: 118 LLSRELYGGFASAIEACEKAGEIQETTIVTIRSADVVEASLENSVAKVTVEFVTEQVKVT 177 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D +I DP+ + DIWTF R+I +PNW L++T++ E Sbjct: 178 RSSDGEVIDGDPDRIDILTDIWTFARDIGNRDPNWELVATRVPE 221 >gi|150398408|ref|YP_001328875.1| import inner membrane translocase subunit Tim44 [Sinorhizobium medicae WSM419] gi|150029923|gb|ABR62040.1| import inner membrane translocase subunit Tim44 [Sinorhizobium medicae WSM419] Length = 234 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 79/232 (34%), Positives = 128/232 (55%), Gaps = 7/232 (3%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG------- 58 M S DF+ F +FLQLR VLG++TG+E+P +S + + + + Sbjct: 1 MGSFDFITFFFLIAAVVIFLQLRSVLGRRTGSERPPFDPYSSRDIAQGPEAKDNGKVVQL 60 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 G + + I + GT LN +R + +F+P +FLN A+ +YE IV +F Sbjct: 61 PRRDGAAEDESRYAEIETVAKAGTPLNAQLRAVTDADPNFNPVEFLNGAKMAYEMIVMAF 120 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 +G ++ L+ VY+ F +++ R++ + VKS+ VGID I++A I+++ IT+ Sbjct: 121 ADGDRKTLKGLLSREVYEGFEAAIAERENKGEVVKSTFVGIDKADIVHAEIKDSEENITV 180 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 RI+ Q ISA+YDK L+ D E +V D+WTF R+I +PNW LI+T+ Sbjct: 181 RIISQLISATYDKQGKLVDGDAESVAEVNDLWTFSRDIRSRDPNWKLIATES 232 >gi|146278709|ref|YP_001168868.1| import inner membrane translocase, subunit Tim44 [Rhodobacter sphaeroides ATCC 17025] gi|145556950|gb|ABP71563.1| import inner membrane translocase, subunit Tim44 [Rhodobacter sphaeroides ATCC 17025] Length = 219 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 113/225 (50%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M S +L+ A I F+ ++L+ VLG + G EKP + R R + G Sbjct: 1 MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPPVPLEDPRP----RPRREFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D +D + + G+ K + + F +FL AR +YE IV +F +G++ Sbjct: 57 PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLTGARGAYEMIVMAFEKGELEQ 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183 I + + V++ F D+++ R++ +V+++ +G+ ++ I AS E I +R VG+ Sbjct: 113 IRPFLSAEVFESFEDAVNAREAEGLSVEANFLGLREIDIHEASFERDSRIGQIAVRFVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S +++ ++ P + D+WTF R++ ++PNW L++T Sbjct: 173 LTSVVRNREGQVVEGSPTEIKRQRDVWTFERHMGANDPNWQLVAT 217 >gi|221640736|ref|YP_002526998.1| Import inner membrane translocase subunit Tim44 [Rhodobacter sphaeroides KD131] gi|221161517|gb|ACM02497.1| Import inner membrane translocase, subunit Tim44 precursor [Rhodobacter sphaeroides KD131] Length = 219 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M S +L+ A I F+ ++L+ VLG + G EKP K R R + G Sbjct: 1 MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPAVPLEDPKP----RTRRDFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D +D + + G+ K + + F +FL AR +YE IV +F +G++ Sbjct: 57 PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLIGARGAYEMIVMAFEKGELEQ 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQ 183 I + V++ F +++ R++ +V+++ +G+ ++ I AS + +T + +R VG+ Sbjct: 113 IRPFLSPDVFESFEEAVKAREAEGLSVEATFLGLREIDIHEASFDRDTRVGQVAVRFVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S D+ +I P + D+WTF R + ++PNW L++T Sbjct: 173 LTSVVRDRTGQVIEGSPTEVKRQRDVWTFERRMGANDPNWQLVAT 217 >gi|46201691|ref|ZP_00054533.2| COG4395: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 219 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 58/229 (25%), Positives = 108/229 (47%), Gaps = 11/229 (4%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 + I+ FA + F+ L+LR VLGK+TG E+P ++ Sbjct: 1 MNDGYHFLDIVFFAMVAAFLVLRLRSVLGKRTGTERPP-----------EKWSPVEAPAD 49 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 ++ P T L + + I + FD FL A+ ++E IV +F G Sbjct: 50 NVVDLQSVRRSASEPPAETPLGQGLAAIRAADRGFDLDGFLGGAKAAFEMIVIAFAHGDK 109 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 ++ L+ VY+ F++++ R+ + + +++ LVGI +++ A ++ +TI+ V + Sbjct: 110 ATLQPLLAPDVYRHFSEAIDARRQHGETLQTELVGIRSAELVEAGMDGRFAALTIKFVSE 169 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ++A D ++ +PE VID+WTF R+ +PNW L +T + Sbjct: 170 QVNALRDAKGEVVEGNPERVIDVIDLWTFRRDTRSPDPNWALTATHTPD 218 >gi|260431955|ref|ZP_05785926.1| transporter, Tim44 family [Silicibacter lacuscaerulensis ITI-1157] gi|260415783|gb|EEX09042.1| transporter, Tim44 family [Silicibacter lacuscaerulensis ITI-1157] Length = 219 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 59/227 (25%), Positives = 113/227 (49%), Gaps = 10/227 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EKP + + + R + G Sbjct: 1 MNSPLIQLLVLAGIAIFLILRLKSVLGTREGFEKPPVP----QQPAASKSRRDFEVIDGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D D + P + + + + + V F +FL AR++YE IV F G + Sbjct: 57 PDRDITDHV----PEDSEIAQTLAAMKRVEPSFSVSEFLQGARSAYEMIVMGFERGNLDE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183 I+ + V++ F ++ R+ ++++ +G+ +M +++A +++T IT+R VG+ Sbjct: 113 IQPFLSEEVFETFVSVVAEREDKGLSIEAEFIGVREMALVDAQFDKDTNRAEITVRFVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S D+D ++ +P + D WTF R + +PNW+L++T Sbjct: 173 LTSVVRDRDGNIVEGNPNTIKRQKDSWTFARVMGADDPNWLLVATDA 219 >gi|288959728|ref|YP_003450069.1| mitochondrial import inner membrane translocase [Azospirillum sp. B510] gi|288912036|dbj|BAI73525.1| mitochondrial import inner membrane translocase [Azospirillum sp. B510] Length = 231 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 107/231 (46%), Gaps = 2/231 (0%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 + I++FA I F+ +LR VLG++TG E+ FS +K D + Sbjct: 1 MGDGFVFIEIVIFAMIAAFLVYRLRSVLGRRTGEERQRPNPFSAAPGAAKPDNVVSLPQR 60 Query: 64 KGKKKDNLDSINELFPIGT-RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 + D + + L + I + FD K FL+ A+ ++ IVD+F G Sbjct: 61 NQPRPDAAPGQDVMASDEPLSLAASIDQIRAADPTFDEKHFLDGAKAAFAMIVDAFARGD 120 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE-NTVYITIRIV 181 + L+ VY F + R++ + ++ + + + +++ A ++ T +T+R+V Sbjct: 121 TATLRPLLADDVYDGFARVIRDRQAAGEQHETRIEQVREAEVVEAKLDAGRTARVTVRLV 180 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ++ D++ ++ DP+ + D+WTF R++ +PNW L+ + + Sbjct: 181 SDQVNVVRDRNGAVVDGDPKALVENTDVWTFARDLRSRDPNWALVEVRPVQ 231 >gi|15963761|ref|NP_384114.1| putative translocase transmembrane protein [Sinorhizobium meliloti 1021] gi|307302564|ref|ZP_07582321.1| import inner membrane translocase subunit Tim44 [Sinorhizobium meliloti BL225C] gi|307316105|ref|ZP_07595549.1| import inner membrane translocase subunit Tim44 [Sinorhizobium meliloti AK83] gi|15072936|emb|CAC41395.1| Import inner membrane translocase subunit TIM44 [Sinorhizobium meliloti 1021] gi|306897945|gb|EFN28687.1| import inner membrane translocase subunit Tim44 [Sinorhizobium meliloti AK83] gi|306903234|gb|EFN33824.1| import inner membrane translocase subunit Tim44 [Sinorhizobium meliloti BL225C] Length = 233 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 127/231 (54%), Gaps = 6/231 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI------ 59 M S DF+ F +FLQLR VLG++TG+E+P +S + + + + Sbjct: 1 MGSFDFITFFFLIAAVVIFLQLRSVLGRRTGSERPPFDPYSPRDIAQGPEAKDNGKVVQL 60 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + +I + GT LN +R + +F+P +FLN A+ +YE IV +F Sbjct: 61 PRRETAEDESRYAAIEIVAKAGTPLNAQLRAMTDADPNFNPAEFLNGAKMAYEMIVMAFA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY+ F +++ R++ + VKS+ VGID I++A I++ IT+R Sbjct: 121 DGDRKTLKGLLSREVYEGFEAAIAEREAKGEVVKSTFVGIDKADIVHAEIKDAEENITVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 I+ Q ISA+YDK L+ D + +V D+WTF R+I +PNW LI+T+ Sbjct: 181 IISQLISATYDKQGKLVDGDADSVAEVNDLWTFARDIRSRDPNWKLIATES 231 >gi|159045985|ref|YP_001534779.1| import inner membrane translocase [Dinoroseobacter shibae DFL 12] gi|157913745|gb|ABV95178.1| import inner membrane translocase [Dinoroseobacter shibae DFL 12] Length = 221 Score = 184 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 55/225 (24%), Positives = 104/225 (46%), Gaps = 8/225 (3%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S IL+ + F+ L+LR VLG + G EK + + R R + G Sbjct: 1 MNSNMLQILVLLGVAVFLILRLRSVLGTREGFEKKPVPLDGPERDVTPR--RDFEVIEGG 58 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D + P G+ K + + F+ +FL A+ +YE I+ SF G + Sbjct: 59 PDTDITDHV----PDGSDSAKALAAMKMAEPGFNVTEFLGGAKGAYEWILMSFENGDMDD 114 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183 ++ + + + F++ + R V++ VG+ + ++ A+ + +T +T+R VG+ Sbjct: 115 VQGFLSEELSEAFSEVIEQRNEQGLTVEAEFVGVRETTLVEAAFDRDTREGEVTVRFVGE 174 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + + ++ DP + D+WTF R + +PNW L++T Sbjct: 175 LTFVVRNAEGEIVEGDPTEIKRQKDVWTFARVMGSDDPNWRLVAT 219 >gi|126724535|ref|ZP_01740378.1| import inner membrane translocase, subunit Tim44 [Rhodobacterales bacterium HTCC2150] gi|126705699|gb|EBA04789.1| import inner membrane translocase, subunit Tim44 [Rhodobacterales bacterium HTCC2150] Length = 236 Score = 184 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 59/228 (25%), Positives = 116/228 (50%), Gaps = 10/228 (4%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F KM S +L+ A I F+ L+L+ VLG + G EKP + + + + + + Sbjct: 15 FTKMGSSMIQLLVLAGIAVFLILRLKNVLGTREGFEKPRAP----QGQAQQSNRPQLEVV 70 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 G +D I E I + + +I + +F ++FL A+ +YE I+ +F GK Sbjct: 71 ENGPDQD----IAEYVEIDSEAGMALAEIKAQDRNFTVQEFLGGAKGAYEMILIAFEGGK 126 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRI 180 + +E + V + F + ++ R+ V ++ +G+ +M + +A+++ T +T++ Sbjct: 127 LSDVEPFLSEEVMESFVEVVADREDQGLTVTANFIGLREMAVHDATLDPITNIAEVTVKF 186 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 VG+ S ++ + ++ D + + DIWTF R++ NPNW L++T Sbjct: 187 VGEMTSVVHNAEGEVVEGDEKTIKRQKDIWTFARDLGDDNPNWQLVAT 234 >gi|83942018|ref|ZP_00954480.1| transporter, Tim44 family protein [Sulfitobacter sp. EE-36] gi|83953067|ref|ZP_00961789.1| transporter, Tim44 family protein [Sulfitobacter sp. NAS-14.1] gi|83842035|gb|EAP81203.1| transporter, Tim44 family protein [Sulfitobacter sp. NAS-14.1] gi|83847838|gb|EAP85713.1| transporter, Tim44 family protein [Sulfitobacter sp. EE-36] Length = 219 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 62/226 (27%), Positives = 105/226 (46%), Gaps = 10/226 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG +TG EKP + + G Sbjct: 1 MNSPMIQLLVLAAIAVFLILRLKNVLGTRTGFEKPA----EVSEKPERPSGPAFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D P G+ + ++ V F DFL AR +YE IV + G + Sbjct: 57 PDLDITDH----APEGSDTALALAEMKRVEPSFGVSDFLGGARGAYEMIVMGYEHGNLDE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183 I+ + +Y+ F + ++ R+ V+S +GI +M++ NA++++ T +TIR V + Sbjct: 113 IKPFLSEDIYESFVEGVAAREDQGLTVESHFIGIREMELENATMDKTTNEAELTIRFVAE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 S D+D ++ + D W F R + +PNW+L+ST Sbjct: 173 LTSVVKDRDGEIVEGSTTEVNRQKDTWVFARVMGSDDPNWLLVSTD 218 >gi|254486605|ref|ZP_05099810.1| transporter, Tim44 family [Roseobacter sp. GAI101] gi|214043474|gb|EEB84112.1| transporter, Tim44 family [Roseobacter sp. GAI101] Length = 219 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 10/226 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EK K + G Sbjct: 1 MNSPMIQLLVLAGIAVFLILRLKNVLGTREGFEKKP----EIDAKPQKPSGPAFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D P G+ + ++ V F DFL AR +YE IV F G + Sbjct: 57 PDLDITDH----APEGSDTALALAEMKRVEPSFGVSDFLGGARGAYEMIVMGFEHGNLDD 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183 I+ + ++ F D ++ R+ V+S+ +GI +M++ NA++++ T +TIR V + Sbjct: 113 IKPFLSEDIFDSFVDGIAAREDQGLTVESTFIGIREMELENATMDKATKEAELTIRFVAE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 S DKD ++I P + D W F R + +PNW+L+ST Sbjct: 173 MTSVVKDKDGMVIEGSPTEVKRQKDTWVFARVMGSDDPNWLLVSTD 218 >gi|23502922|ref|NP_699049.1| hypothetical protein BR2074 [Brucella suis 1330] gi|82700829|ref|YP_415403.1| calcium-binding EF-hand [Brucella melitensis biovar Abortus 2308] gi|225626454|ref|ZP_03784493.1| import inner membrane translocase subunit Tim44 [Brucella ceti str. Cudo] gi|237816425|ref|ZP_04595418.1| Tim44-like domain protein [Brucella abortus str. 2308 A] gi|256370472|ref|YP_003107983.1| hypothetical protein BMI_I2096 [Brucella microti CCM 4915] gi|23348955|gb|AAN30964.1| conserved hypothetical protein [Brucella suis 1330] gi|82616930|emb|CAJ12031.1| Calcium-binding EF-hand [Brucella melitensis biovar Abortus 2308] gi|225618111|gb|EEH15154.1| import inner membrane translocase subunit Tim44 [Brucella ceti str. Cudo] gi|237788492|gb|EEP62707.1| Tim44-like domain protein [Brucella abortus str. 2308 A] gi|256000635|gb|ACU49034.1| hypothetical protein BMI_I2096 [Brucella microti CCM 4915] Length = 235 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 68/217 (31%), Positives = 124/217 (57%), Gaps = 4/217 (1%) Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG++TGNEKP + S + + +++L + + + +I+ Sbjct: 19 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 78 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 79 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 138 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D + Sbjct: 139 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 198 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 I DP+ ++ D+WTF R+ +PNW L++T+ + Sbjct: 199 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 235 >gi|89067415|ref|ZP_01154928.1| transporter, Tim44 family protein [Oceanicola granulosus HTCC2516] gi|89046984|gb|EAR53038.1| transporter, Tim44 family protein [Oceanicola granulosus HTCC2516] Length = 220 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 108/225 (48%), Gaps = 9/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+LR VLG + G EKP + R + + G Sbjct: 1 MNSPIIQLLVLAGIAVFLILRLRSVLGTREGFEKPPVTESDR---SALRRRPDLEVIEGG 57 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D +D ++ G+ + + F DFL AR +YE I+ +F G + Sbjct: 58 PDRDIVDHVD----AGSDAADALARMKRAEPAFGVGDFLGGARGAYEMILMAFENGDLSE 113 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183 ++ + VY+ F+ + R+ +V+++ VG+ ++ + +A +E T +T+R G+ Sbjct: 114 VKDFLGPEVYEAFSQVIEERRERGLHVEATFVGLSEITLKDAEFDETTREAELTVRFTGE 173 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S D ++ P + D+WTF R + ++PNW+L++T Sbjct: 174 ITSVVRDAGGDIVEGSPTEIKRQRDVWTFARTMGANDPNWILVAT 218 >gi|56698697|ref|YP_169074.1| Tim44 family protein [Ruegeria pomeroyi DSS-3] gi|56680434|gb|AAV97100.1| transporter, Tim44 family [Ruegeria pomeroyi DSS-3] Length = 218 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 11/227 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EKP R R + G Sbjct: 1 MNSPLIQLLVLAGIAIFLILRLKSVLGTREGFEKPPVPQ-----QPENRTRRDFEVIEGG 55 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D D + E P + + + + F +F+ AR +YE IV F G + Sbjct: 56 PDRDITDHVPEDSPQ----AQALAAMKRIEPAFSVSEFVQGARGAYEMIVMGFERGNLDE 111 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183 IE + V++ F ++ R+ +++ +G+ + I + ++++ IT+R VG+ Sbjct: 112 IEPFLTEEVFETFVGVVAAREDQGLTIEAEFIGVRETSIQDVHFDKDSNRGEITMRFVGE 171 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S D+ +I P + D+WTF R + +PNW+L++T Sbjct: 172 LTSVVRDRGGDVIEGSPTAVKRQKDVWTFARVMGTDDPNWLLVATDA 218 >gi|161619988|ref|YP_001593875.1| import inner membrane translocase subunit Tim44 [Brucella canis ATCC 23365] gi|163844092|ref|YP_001628496.1| import inner membrane translocase subunit Tim44 [Brucella suis ATCC 23445] gi|189025131|ref|YP_001935899.1| Calcium-binding EF-hand [Brucella abortus S19] gi|254690207|ref|ZP_05153461.1| Calcium-binding EF-hand [Brucella abortus bv. 6 str. 870] gi|254694697|ref|ZP_05156525.1| Calcium-binding EF-hand [Brucella abortus bv. 3 str. Tulya] gi|254696324|ref|ZP_05158152.1| Calcium-binding EF-hand [Brucella abortus bv. 2 str. 86/8/59] gi|254700706|ref|ZP_05162534.1| Calcium-binding EF-hand [Brucella suis bv. 5 str. 513] gi|254705077|ref|ZP_05166905.1| Calcium-binding EF-hand [Brucella suis bv. 3 str. 686] gi|254709052|ref|ZP_05170863.1| Calcium-binding EF-hand [Brucella pinnipedialis B2/94] gi|254713521|ref|ZP_05175332.1| Calcium-binding EF-hand [Brucella ceti M644/93/1] gi|254716123|ref|ZP_05177934.1| Calcium-binding EF-hand [Brucella ceti M13/05/1] gi|254718117|ref|ZP_05179928.1| Calcium-binding EF-hand [Brucella sp. 83/13] gi|254731240|ref|ZP_05189818.1| Calcium-binding EF-hand [Brucella abortus bv. 4 str. 292] gi|256030577|ref|ZP_05444191.1| Calcium-binding EF-hand [Brucella pinnipedialis M292/94/1] gi|256060039|ref|ZP_05450221.1| Calcium-binding EF-hand [Brucella neotomae 5K33] gi|260169483|ref|ZP_05756294.1| Calcium-binding EF-hand [Brucella sp. F5/99] gi|260546180|ref|ZP_05821920.1| calcium-binding EF-hand protein [Brucella abortus NCTC 8038] gi|260567455|ref|ZP_05837925.1| calcium-binding EF-hand protein [Brucella suis bv. 4 str. 40] gi|260755747|ref|ZP_05868095.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 6 str. 870] gi|260758971|ref|ZP_05871319.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 4 str. 292] gi|260760695|ref|ZP_05873038.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 2 str. 86/8/59] gi|261215024|ref|ZP_05929305.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 3 str. Tulya] gi|261217893|ref|ZP_05932174.1| import inner membrane translocase subunit Tim44 [Brucella ceti M13/05/1] gi|261316550|ref|ZP_05955747.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis B2/94] gi|261321257|ref|ZP_05960454.1| import inner membrane translocase subunit Tim44 [Brucella ceti M644/93/1] gi|261324015|ref|ZP_05963212.1| import inner membrane translocase subunit Tim44 [Brucella neotomae 5K33] gi|261751215|ref|ZP_05994924.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 5 str. 513] gi|261755779|ref|ZP_05999488.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 3 str. 686] gi|261759008|ref|ZP_06002717.1| calcium-binding EF-hand protein [Brucella sp. F5/99] gi|265983069|ref|ZP_06095804.1| import inner membrane translocase subunit Tim44 [Brucella sp. 83/13] gi|265987624|ref|ZP_06100181.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M292/94/1] gi|306839744|ref|ZP_07472546.1| import inner membrane translocase subunit Tim44 [Brucella sp. NF 2653] gi|306842810|ref|ZP_07475450.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO2] gi|306843493|ref|ZP_07476094.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO1] gi|161336799|gb|ABX63104.1| import inner membrane translocase subunit Tim44 [Brucella canis ATCC 23365] gi|163674815|gb|ABY38926.1| import inner membrane translocase subunit Tim44 [Brucella suis ATCC 23445] gi|189020703|gb|ACD73425.1| Calcium-binding EF-hand [Brucella abortus S19] gi|260096287|gb|EEW80163.1| calcium-binding EF-hand protein [Brucella abortus NCTC 8038] gi|260156973|gb|EEW92053.1| calcium-binding EF-hand protein [Brucella suis bv. 4 str. 40] gi|260669289|gb|EEX56229.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 4 str. 292] gi|260671127|gb|EEX57948.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 2 str. 86/8/59] gi|260675855|gb|EEX62676.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 6 str. 870] gi|260916631|gb|EEX83492.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 3 str. Tulya] gi|260922982|gb|EEX89550.1| import inner membrane translocase subunit Tim44 [Brucella ceti M13/05/1] gi|261293947|gb|EEX97443.1| import inner membrane translocase subunit Tim44 [Brucella ceti M644/93/1] gi|261295773|gb|EEX99269.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis B2/94] gi|261299995|gb|EEY03492.1| import inner membrane translocase subunit Tim44 [Brucella neotomae 5K33] gi|261738992|gb|EEY26988.1| calcium-binding EF-hand protein [Brucella sp. F5/99] gi|261740968|gb|EEY28894.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 5 str. 513] gi|261745532|gb|EEY33458.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 3 str. 686] gi|264659821|gb|EEZ30082.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M292/94/1] gi|264661661|gb|EEZ31922.1| import inner membrane translocase subunit Tim44 [Brucella sp. 83/13] gi|306276184|gb|EFM57884.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO1] gi|306287004|gb|EFM58515.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO2] gi|306405204|gb|EFM61481.1| import inner membrane translocase subunit Tim44 [Brucella sp. NF 2653] Length = 231 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 68/217 (31%), Positives = 124/217 (57%), Gaps = 4/217 (1%) Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG++TGNEKP + S + + +++L + + + +I+ Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D + Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 194 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 I DP+ ++ D+WTF R+ +PNW L++T+ + Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231 >gi|225853505|ref|YP_002733738.1| import inner membrane translocase subunit Tim44 [Brucella melitensis ATCC 23457] gi|256045678|ref|ZP_05448556.1| transporter [Brucella melitensis bv. 1 str. Rev.1] gi|256263013|ref|ZP_05465545.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 2 str. 63/9] gi|260562979|ref|ZP_05833465.1| calcium-binding EF-hand protein [Brucella melitensis bv. 1 str. 16M] gi|265992099|ref|ZP_06104656.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 1 str. Rev.1] gi|225641870|gb|ACO01784.1| import inner membrane translocase subunit Tim44 [Brucella melitensis ATCC 23457] gi|260152995|gb|EEW88087.1| calcium-binding EF-hand protein [Brucella melitensis bv. 1 str. 16M] gi|263003165|gb|EEZ15458.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 1 str. Rev.1] gi|263092886|gb|EEZ17061.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 2 str. 63/9] gi|326410072|gb|ADZ67137.1| import inner membrane translocase subunit Tim44 [Brucella melitensis M28] gi|326539788|gb|ADZ88003.1| import inner membrane translocase subunit Tim44 [Brucella melitensis M5-90] Length = 231 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 68/217 (31%), Positives = 123/217 (56%), Gaps = 4/217 (1%) Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG++TGNEKP + S + +++L + + + +I+ Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGGPDNVVSLPRRANEKDYTAID 74 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D + Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 194 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 I DP+ ++ D+WTF R+ +PNW L++T+ + Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231 >gi|256158573|ref|ZP_05456463.1| calcium-binding EF-hand [Brucella ceti M490/95/1] gi|256253984|ref|ZP_05459520.1| calcium-binding EF-hand [Brucella ceti B1/94] gi|261221124|ref|ZP_05935405.1| import inner membrane translocase subunit Tim44 [Brucella ceti B1/94] gi|265997084|ref|ZP_06109641.1| import inner membrane translocase subunit Tim44 [Brucella ceti M490/95/1] gi|260919708|gb|EEX86361.1| import inner membrane translocase subunit Tim44 [Brucella ceti B1/94] gi|262551552|gb|EEZ07542.1| import inner membrane translocase subunit Tim44 [Brucella ceti M490/95/1] Length = 231 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 68/217 (31%), Positives = 124/217 (57%), Gaps = 4/217 (1%) Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG++TGNEKP + S + + +++L + + + +I+ Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D + Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQIISSTLDRDGKV 194 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 I DP+ ++ D+WTF R+ +PNW L++T+ + Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231 >gi|148559170|ref|YP_001259879.1| hypothetical protein BOV_1994 [Brucella ovis ATCC 25840] gi|148370427|gb|ABQ60406.1| conserved hypothetical protein [Brucella ovis ATCC 25840] Length = 231 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 68/217 (31%), Positives = 123/217 (56%), Gaps = 4/217 (1%) Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG++TGNEKP + S + + +++L + + + +I+ Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDRKVLKNLLSKDVY 134 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS+ D+D + Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSILDRDGKV 194 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 I DP+ ++ D+WTF R+ +PNW L++T+ + Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231 >gi|255263169|ref|ZP_05342511.1| transporter, Tim44 family [Thalassiobium sp. R2A62] gi|255105504|gb|EET48178.1| transporter, Tim44 family [Thalassiobium sp. R2A62] Length = 219 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+LR VLG + G EKP + + R + G Sbjct: 1 MNSPIIQLLVLAGIAIFLILRLRNVLGTREGFEKPPAQ----QSSAPDRALSDFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D + P G + + V F+ +FL AR +YE I+ +F G++ Sbjct: 57 PDHDITDHV----PEGGDAYNALLGMKKVDPSFNVGEFLGGARGAYEMILMAFERGEIEE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183 I+ + S VY+ F + RK+ ++++ VGI DM + A E T I +R VG+ Sbjct: 113 IKPFLSSDVYEAFATVVDDRKAKGVTIEANFVGISDMALNAADFNETTGEAEIAVRFVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S DK +I + D WTF R++ +PNW L++T Sbjct: 173 MTSIVRDKGGDVIEGSETTVKRQKDTWTFARDMDADDPNWDLVAT 217 >gi|239833115|ref|ZP_04681444.1| import inner membrane translocase subunit Tim44 [Ochrobactrum intermedium LMG 3301] gi|239825382|gb|EEQ96950.1| import inner membrane translocase subunit Tim44 [Ochrobactrum intermedium LMG 3301] Length = 253 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 73/217 (33%), Positives = 125/217 (57%), Gaps = 4/217 (1%) Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG++TGNEKP + S + + +++L + + + +I+ Sbjct: 37 AVIIFLQLRNVLGRRTGNEKPPFDPYTSARSADAAPAGSETDNVVSLPRRTGEKDFTAID 96 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 + P GT +N +R I + FDP F++ + +YE IV SF +G ++ L+ VY Sbjct: 97 KAAPAGTPVNDGLRAIYAADPSFDPASFVDGVKIAYEMIVMSFADGDRKVLKNLLSKDVY 156 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + F ++ R++ ++V+SS VGID +I A ++ + ++T+ IV Q IS++YDKD L Sbjct: 157 EGFVSAIDEREARGESVRSSFVGIDKAEITGAEMKGSEAHVTVNIVSQMISSTYDKDGKL 216 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 I DPE ++ D+WTF R+ +PNW L++T+ + Sbjct: 217 IDGDPENVLEIKDLWTFARDTRSRDPNWKLVATEAED 253 >gi|256112399|ref|ZP_05453320.1| transporter [Brucella melitensis bv. 3 str. Ether] gi|265993836|ref|ZP_06106393.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 3 str. Ether] gi|262764817|gb|EEZ10738.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 3 str. Ether] Length = 231 Score = 182 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 68/217 (31%), Positives = 123/217 (56%), Gaps = 4/217 (1%) Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG++TGNEKP + S + +++L + + + +I+ Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGGPDNVVSLPRRANEKDYTAID 74 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D + Sbjct: 135 EGFVAAIDEREKQGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 194 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 I DP+ ++ D+WTF R+ +PNW L++T+ + Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231 >gi|297247302|ref|ZP_06931020.1| hypothetical protein BAYG_00201 [Brucella abortus bv. 5 str. B3196] gi|297174471|gb|EFH33818.1| hypothetical protein BAYG_00201 [Brucella abortus bv. 5 str. B3196] Length = 235 Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 68/217 (31%), Positives = 124/217 (57%), Gaps = 4/217 (1%) Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG++TGNEKP + S + + +++L + + + +I+ Sbjct: 19 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 78 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 79 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 138 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D + Sbjct: 139 EGFVAAIDEREKWGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 198 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 I DP+ ++ D+WTF R+ +PNW L++T+ + Sbjct: 199 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 235 >gi|254780815|ref|YP_003065228.1| hypothetical protein CLIBASIA_03530 [Candidatus Liberibacter asiaticus str. psy62] gi|254040492|gb|ACT57288.1| hypothetical protein CLIBASIA_03530 [Candidatus Liberibacter asiaticus str. psy62] Length = 232 Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 232/232 (100%), Positives = 232/232 (100%) Query: 1 MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60 MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII Sbjct: 1 MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE Sbjct: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI Sbjct: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE Sbjct: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 >gi|256258462|ref|ZP_05463998.1| calcium-binding EF-hand [Brucella abortus bv. 9 str. C68] gi|260884773|ref|ZP_05896387.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 9 str. C68] gi|260874301|gb|EEX81370.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 9 str. C68] Length = 231 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 68/217 (31%), Positives = 124/217 (57%), Gaps = 4/217 (1%) Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG++TGNEKP + S + + +++L + + + +I+ Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D + Sbjct: 135 EGFVAAIDEREKWGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 194 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 I DP+ ++ D+WTF R+ +PNW L++T+ + Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231 >gi|307943366|ref|ZP_07658710.1| import inner membrane translocase subunit Tim44 [Roseibium sp. TrichSKD4] gi|307772996|gb|EFO32213.1| import inner membrane translocase subunit Tim44 [Roseibium sp. TrichSKD4] Length = 244 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 132/239 (55%), Gaps = 16/239 (6%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKY------VFSKRDERGIITLG 63 D ++F + F+ +L+ VLGK+TGNE+P +S + K +I + Sbjct: 6 DVYNIIFLGLAVFILFRLKSVLGKRTGNERPPFDPYSKQDDAGQSSQGGKSQSDNVIPMP 65 Query: 64 KG----------KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 +++ I++L P GT LN+ ++ I+SV F+P++F+ A +YE Sbjct: 66 GQESYQETGIREPEENGEVVIDKLAPQGTALNEALKQILSVDRTFEPREFIEGASAAYEM 125 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 IV +F EG +++L+ V+ F ++ R+ ++ ++S+ VGID +I+ A++++ T Sbjct: 126 IVTAFAEGDRKTLKQLLSKDVFDGFIMAIDEREKRDEVIESTFVGIDKAEIVEAALKDGT 185 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +T+++ Q ISA+ DKD ++ DP +VIDIWTF R+ +PNW L++T+ E Sbjct: 186 AQVTVKVQSQLISATCDKDGEVVDGDPNKVSEVIDIWTFARDTGSRDPNWKLVATESAE 244 >gi|254460692|ref|ZP_05074108.1| import inner membrane translocase, subunit Tim44 [Rhodobacterales bacterium HTCC2083] gi|206677281|gb|EDZ41768.1| import inner membrane translocase, subunit Tim44 [Rhodobacteraceae bacterium HTCC2083] Length = 217 Score = 181 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 12/225 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G E+P + V S R + G Sbjct: 1 MNSPIIQLLVLAGIAVFLILRLKNVLGTREGFEQPPAQ------VPSGRKRPEFEVIEGG 54 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D + + + + + + F DFL AR +YE I+ F G++ Sbjct: 55 PDPDIADHTDGMP----EAAEALAKMKAAEPSFGVSDFLGGARGAYEMILIGFERGEMAD 110 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN--TVYITIRIVGQ 183 I+ +D VY F + + R V++ VGI +M + +A+ ++ ++++ +G+ Sbjct: 111 IKPFLDDDVYASFAEVVEMRAKQGLTVEAEFVGIREMSLADATFDDENGIGEVSVKFIGE 170 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S D ++ D + + DIWTF R + +PNW L++T Sbjct: 171 MTSVVRDNAGEIVEGDAKKVKRQKDIWTFARKMGSDDPNWQLVAT 215 >gi|83594937|ref|YP_428689.1| hypothetical protein Rru_A3608 [Rhodospirillum rubrum ATCC 11170] gi|83577851|gb|ABC24402.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 219 Score = 181 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 58/229 (25%), Positives = 114/229 (49%), Gaps = 11/229 (4%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 + I+ FA I F+ L+LR VLG++TG E+ F + + +I L Sbjct: 1 MNEGFQYIDIIFFAMIAAFLVLRLRSVLGRRTGEEQRRPDPF----AQPESAQDNVIDLS 56 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 K P L + I F P+ FL A+ ++E I+ ++ +G Sbjct: 57 GRKAVAGR-------PGDGTLAGGLTQIQLTDPSFSPEGFLIGAKAAFEMILMAYAKGDK 109 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 ++ L+ V+Q+F+ ++ R+ ++ +++ LVG ++I+ A ++ +T++ V + Sbjct: 110 AVLKPLLAGEVFQNFSRAIDEREQADETMETDLVGFKSVEILRAGMDGQDALVTVKFVTE 169 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +++ DK + ++ +P +V DIWTF R+ ++PNW LI+T++ E Sbjct: 170 QVNSVRDKSDTVVDGNPNQVEEVTDIWTFRRDTVSNDPNWDLIATQVPE 218 >gi|114762187|ref|ZP_01441655.1| transporter, Tim44 family protein [Pelagibaca bermudensis HTCC2601] gi|114545211|gb|EAU48214.1| transporter, Tim44 family protein [Roseovarius sp. HTCC2601] Length = 219 Score = 181 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 108/227 (47%), Gaps = 10/227 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M++ +L+ A I F+ L+LR VLG + G EKP S S + + R + G Sbjct: 1 MNTPIVQLLVLAGIAIFLILRLRSVLGTRDGFEKPESPSPSRRDDTA----RDFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D +D + P + + + + F +FL+ AR +YE I+ F G++ Sbjct: 57 PDHDIIDHV----PENSPAAEALAKMKRAEPSFGVGEFLSGARGAYEMILMGFDNGEIED 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQ 183 ++ + +Y+ F+D + R +++ VG+ ++ +++A+ ++ IT++ VG+ Sbjct: 113 LKPFLSDEIYETFSDVIEQRAQQGLTIEAQFVGVRELSLVDATFDDTERLAEITVKYVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S + +I P + D+WT+ R + +PNW L++T Sbjct: 173 LTSVVKNAAGEVIEGSPTAVKRQKDVWTYARRMGSDDPNWQLVATDE 219 >gi|294851303|ref|ZP_06791976.1| hypothetical protein BAZG_00203 [Brucella sp. NVSL 07-0026] gi|294819892|gb|EFG36891.1| hypothetical protein BAZG_00203 [Brucella sp. NVSL 07-0026] Length = 235 Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 68/217 (31%), Positives = 123/217 (56%), Gaps = 4/217 (1%) Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG +TGNEKP + S + + +++L + + + +I+ Sbjct: 19 AVIIFLQLRNVLGCRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 78 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 79 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 138 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D + Sbjct: 139 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 198 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 I DP+ ++ D+WTF R+ +PNW L++T+ + Sbjct: 199 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 235 >gi|182680015|ref|YP_001834161.1| import inner membrane translocase subunit Tim44 [Beijerinckia indica subsp. indica ATCC 9039] gi|182635898|gb|ACB96672.1| import inner membrane translocase subunit Tim44 [Beijerinckia indica subsp. indica ATCC 9039] Length = 260 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 102/242 (42%), Gaps = 20/242 (8%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGK--------------------Y 49 D I++FA + F+ +LR VLG + GNE+P G+ Sbjct: 8 DMSIVIFALLAAFLIWKLRSVLGTRQGNEEPRDNSVPGQWPSLFSPKSQDPSQANKNGAP 67 Query: 50 VFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN 109 R G + + + + + I F P FL AR+ Sbjct: 68 GQPTFPNRPSPAGASGAPAEAGRNWSAFVEPNSPAAAGLEAIAKADPAFAPGPFLEGARH 127 Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 +YE IV++F EG+ A+ L+ VY F +++ R+S V+ + V +D KI A++ Sbjct: 128 AYEMIVNAFAEGQRSALANLLVRDVYAGFEAAITERESQGHKVELTFVSLDAAKIEEAAL 187 Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 IT+R + I + D ++ P+ V D+WTF R I +PNW L +TK Sbjct: 188 FHQIAEITLRYKAKMIKVTRDAQGAVVEGSPDHVVDVDDLWTFERMIGSQDPNWKLAATK 247 Query: 230 LG 231 G Sbjct: 248 TG 249 >gi|62290918|ref|YP_222711.1| hypothetical protein BruAb1_2049 [Brucella abortus bv. 1 str. 9-941] gi|62197050|gb|AAX75350.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941] Length = 231 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 68/217 (31%), Positives = 124/217 (57%), Gaps = 4/217 (1%) Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG++TGNEKP + S + + +++L + + + +I+ Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D + Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 194 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 I DP+ ++ D+WTF R+ +PNW L++T+ + Sbjct: 195 IDGDPDNMVEIKDLWTFARDTNSRDPNWKLVATEAED 231 >gi|260429391|ref|ZP_05783368.1| transporter, Tim44 family [Citreicella sp. SE45] gi|260420014|gb|EEX13267.1| transporter, Tim44 family [Citreicella sp. SE45] Length = 219 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 111/227 (48%), Gaps = 10/227 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M++ +L+ A I F+ L+LR VLG + G EKP + + + +R + G Sbjct: 1 MNTPIVQLLVLAGIAIFLILRLRSVLGTRDGFEKPEAPAPAKRDDR----KRDFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D + P + + + + + F+ +FL+ AR +YE I+ F G++ Sbjct: 57 PDHDITDHV----PENSPAAEALAKMKRIEPSFNVTEFLSGARGAYEMILMGFDNGEIED 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQ 183 ++ + +Y+ F+D + R V++ VG+ ++ +++AS +E IT++ VG+ Sbjct: 113 LKPFLSDEIYETFSDVIEQRGQQGLTVEAEFVGVRELSLVDASFDETRQLAEITVKYVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S + ++ +P + D+WT+ RN+ +PNW L++T Sbjct: 173 LTSVVKNAAGEIVEGNPRTVKRQKDVWTYARNMGTDDPNWQLVATDE 219 >gi|17988336|ref|NP_540970.1| transporter [Brucella melitensis bv. 1 str. 16M] gi|17984111|gb|AAL53234.1| transporter [Brucella melitensis bv. 1 str. 16M] Length = 216 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 68/216 (31%), Positives = 123/216 (56%), Gaps = 4/216 (1%) Query: 21 FFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSINE 76 +FLQLR VLG++TGNEKP + S + +++L + + + +I++ Sbjct: 1 MIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGGPDNVVSLPRRANEKDYTAIDK 60 Query: 77 LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136 + P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY+ Sbjct: 61 IAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVYE 120 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196 F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D +I Sbjct: 121 GFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKVI 180 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 DP+ ++ D+WTF R+ +PNW L++T+ + Sbjct: 181 DGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 216 >gi|126734398|ref|ZP_01750145.1| import inner membrane translocase, subunit Tim44 [Roseobacter sp. CCS2] gi|126717264|gb|EBA14128.1| import inner membrane translocase, subunit Tim44 [Roseobacter sp. CCS2] Length = 220 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 9/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+LRGVLG + G EKP K D + G Sbjct: 1 MNSPLIQLLVLAGIAVFLILRLRGVLGTREGFEKPAVTRPEPSSRVGKPD---FDVIEGG 57 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D I G+ K + D+ F+ +FL AR +YE I+ +F G + + Sbjct: 58 PDLDITDHI----EEGSDSAKALADMKRADPSFNVSEFLGGARGAYEMILMAFENGDLDS 113 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183 I + VY+ F + R+ V + +GI DM + A ++ +++R + Sbjct: 114 IVPFISEDVYEAFASVVDERQRQGLTVDAKFIGISDMTLTEAVFDDFSKEGEVSVRFKSE 173 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S D +I + D WTF R + +PNW L++T Sbjct: 174 MTSVVRDNAGDIIEGSETEIKRQKDTWTFARKMDADDPNWRLVAT 218 >gi|149912880|ref|ZP_01901414.1| transporter, Tim44 family protein [Roseobacter sp. AzwK-3b] gi|149813286|gb|EDM73112.1| transporter, Tim44 family protein [Roseobacter sp. AzwK-3b] Length = 219 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 58/224 (25%), Positives = 109/224 (48%), Gaps = 8/224 (3%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G E P S + + + + G Sbjct: 1 MNSPLLQLLVLAGIAIFLILRLKSVLGTRDGFEGPPR---SERAGATPQRRDTFEVIEGG 57 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D +D++++ G+ + + + F+ FL AR +YE I+ +F G++ Sbjct: 58 PDYDIIDNVSD----GSDAADALARMKRIEPSFNVTQFLQGARGAYEMILMAFERGQLED 113 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYITIRIVGQF 184 + +D VY+ F + R+ V++ +G+ + K+ A+ ++N IT+R VG+ Sbjct: 114 VAPFLDEDVYEAFAQVIDARQEQGLIVEAEFLGLRETKLAEATLSDDNRAAITVRFVGEL 173 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S D + ++ D + + DIWTF R + +PNW L++T Sbjct: 174 TSIVRDANGEIVEGDAKTAKRQKDIWTFERVMGSDDPNWRLVAT 217 >gi|254500164|ref|ZP_05112315.1| Tim44-like domain family [Labrenzia alexandrii DFL-11] gi|222436235|gb|EEE42914.1| Tim44-like domain family [Labrenzia alexandrii DFL-11] Length = 245 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 124/230 (53%), Gaps = 17/230 (7%) Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG---------------- 63 F+ +LR VLGK+TG E+P +S + + + Sbjct: 16 AVFILFRLRSVLGKRTGEERPPFDPYSKPEQQNGQANGQDNVIPLPHQGQQSPEGYDDMA 75 Query: 64 -KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 +++D I+++ P G+ LN ++ I+SV F+P+ F+ A+ +YE IV +F +G Sbjct: 76 PARQEEDGEVVIDKVAPAGSALNNALKQILSVDRSFEPEPFIQGAKAAYEMIVMAFADGD 135 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 A++ L+ V++ F+ ++ R+ + ++S+ VGID +I+ A++++ T +T+RI Sbjct: 136 KKALKNLLSRDVFEGFSAAIDDREKRGETIESTFVGIDKAEIVEAALKDTTAQVTVRIHS 195 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 Q ISA+ DK ++ DP +VIDIWTF R+ +PNW L++T+ E Sbjct: 196 QLISATRDKGGEVVDGDPAKVTEVIDIWTFARDTATRDPNWKLVATESAE 245 >gi|163745120|ref|ZP_02152480.1| hypothetical protein OIHEL45_06015 [Oceanibulbus indolifex HEL-45] gi|161381938|gb|EDQ06347.1| hypothetical protein OIHEL45_06015 [Oceanibulbus indolifex HEL-45] Length = 219 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 10/226 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EKP S R + G Sbjct: 1 MNSPLIQLLVLAGIAVFLILRLKNVLGTREGFEKPPVS----DQTPSARSGPSFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D + P + K + ++ V F DFL AR +YE IV + G + Sbjct: 57 PDLDITDHV----PEDSTSGKALAEMKRVEPSFGVNDFLQGARGAYEMIVMGYERGDLAE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183 I+ + VY+ F D ++ R+ ++++ +G+ ++++I+A ++E T +TIR VG+ Sbjct: 113 IQPFLAEDVYESFVDGVAAREDQGLTIEANFIGVRELELIDARMDEATKEAELTIRFVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 SA +++ ++ + D W F R + +PNW+L+ST Sbjct: 173 LTSAVRNREGEIVEGSINEIKRQKDTWVFARVMGSDDPNWLLVSTD 218 >gi|126738514|ref|ZP_01754219.1| transporter, Tim44 family protein [Roseobacter sp. SK209-2-6] gi|126720313|gb|EBA17019.1| transporter, Tim44 family protein [Roseobacter sp. SK209-2-6] Length = 241 Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 106/226 (46%), Gaps = 11/226 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EKP + + + + G Sbjct: 24 MESPLIQLLVLAGIAVFLILRLKSVLGTREGFEKPPVSAAEKR-----QGRPDLEVIEGG 78 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D D + E P + + F +F+ AR +YE I+ F G++ A Sbjct: 79 PDRDITDHVEEESP----AAQAFASMKRAEPSFSVSEFVQGARGAYEMILMGFENGELDA 134 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQ 183 ++ + VY F ++++ R+ +++ +G+ + ++ A + NT +T+R VG+ Sbjct: 135 LKGFLAEDVYDSFVEAVADREDKGLTIEAEFIGVRETAVVGAHFDDANNTAEVTMRFVGE 194 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 S D+D ++ D + + D W F R++ +PNW L++T Sbjct: 195 LTSVVRDRDGEIVEGDAKAVKRQKDTWVFARSMGTDDPNWQLVATD 240 >gi|149204297|ref|ZP_01881264.1| transporter, Tim44 family protein [Roseovarius sp. TM1035] gi|149142182|gb|EDM30229.1| transporter, Tim44 family protein [Roseovarius sp. TM1035] Length = 219 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G E P R R + G Sbjct: 1 MNSPILQLLVLAGIAIFLILRLKSVLGTRDGFEGPTRSA----PAPETRRRREFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D +D + P + + ++ + DF FL AR +YE I+ +F GK+ Sbjct: 57 PDHDIVDHV----PEDSDAAAALAEMKRIEPDFSVTTFLQGARGAYEMILMAFERGKLDE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183 + +D VY+ F + R+ +++ +G+ ++ + +A + +T I++R VG+ Sbjct: 113 VTPFLDRDVYETFAQVVDAREQQGLTIEAEFIGVRELTLADARFDADTRRAEISVRYVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 IS D ++ P + D+WT+ R + +PNW L++T Sbjct: 173 LISVVRDSTGEIVEGVPGQSKRQKDVWTYERVMGADDPNWRLVAT 217 >gi|170750111|ref|YP_001756371.1| import inner membrane translocase subunit Tim44 [Methylobacterium radiotolerans JCM 2831] gi|170656633|gb|ACB25688.1| import inner membrane translocase subunit Tim44 [Methylobacterium radiotolerans JCM 2831] Length = 237 Score = 177 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 55/234 (23%), Positives = 108/234 (46%), Gaps = 9/234 (3%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 DS D ++F + FV +LR VLG+KTG E+ + G + Sbjct: 3 DSFDVTTIIFLALAVFVIWRLRSVLGQKTGAERSPFKPVDRSRTEPQARSDGDNVVRLPG 62 Query: 67 KKDNL---------DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117 + G+ + + + + FDP+ F+ A+++YEAI+ + Sbjct: 63 ADRVQAAPPPAAAPRDWRGIAEPGSEVARGLEACIQAEPSFDPRAFIEGAKSAYEAIMIA 122 Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 F +G + L+ V + F +++ R+ N + ++++ V ID +I+ + ++T Sbjct: 123 FAKGDRKTLRGLLSKEVGEAFERAIAERERNRQTLETTFVSIDKAEIVAVEVRNRVAHVT 182 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 +R + I+A+ + D ++ E +V D+WTF R + +PNW L++T+ G Sbjct: 183 VRFLSNLITATRNADGKVVDGSAETVVEVPDVWTFARTLGSRDPNWQLVATEAG 236 >gi|254463881|ref|ZP_05077292.1| transporter, Tim44 family [Rhodobacterales bacterium Y4I] gi|206684789|gb|EDZ45271.1| transporter, Tim44 family [Rhodobacterales bacterium Y4I] Length = 214 Score = 177 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 11/223 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 +L+ A I F+ L+LR VLG + G EKP + + + G +D Sbjct: 1 MIQLLVLAGIAVFLILRLRSVLGTREGFEKPPLPQSEARGR-----RPDLEVIEGGPDRD 55 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 D + E G++ + + + F ++F+ AR +YE I+ F G + I+ Sbjct: 56 ITDYVAE----GSKQAQALAAMKRAEPSFQVQEFVQGARGAYEMILMGFEHGNLDDIQPF 111 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQFISA 187 + V+ F D+++ R+ +++ +G+ + + +A + T IT+R VG+ S Sbjct: 112 LAEDVFDSFVDAVAQREDKGYKIEADFIGVRETTLQDAQFDPQTGRAEITMRFVGELTSV 171 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D+ ++ DP+ + D W F RN+ +PNW L++T Sbjct: 172 VRDRGGDIVEGDPKAIKRQKDTWIFARNMGSDDPNWQLVATDA 214 >gi|153008182|ref|YP_001369397.1| import inner membrane translocase subunit Tim44 [Ochrobactrum anthropi ATCC 49188] gi|151560070|gb|ABS13568.1| import inner membrane translocase subunit Tim44 [Ochrobactrum anthropi ATCC 49188] Length = 231 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 71/217 (32%), Positives = 125/217 (57%), Gaps = 4/217 (1%) Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG++TG+EKP + S + + +++L + + + +I+ Sbjct: 15 AVIIFLQLRNVLGRRTGSEKPPFDPYTSARSADAAPASGETDNVVSLPRRPGEKDFTAID 74 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 + P+GT +N MR I + FDP F+ + +YE IV SF +G ++ L+ V+ Sbjct: 75 KAAPVGTPVNDGMRAIYAADPSFDPAGFVEGVKIAYEMIVMSFADGDRKVLKNLLSKDVF 134 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + F ++ R++ ++V+SS VGID +I A ++ + ++T+ IV Q IS+++DKD L Sbjct: 135 EGFVSAIDDRETRGESVRSSFVGIDKAEIAGAEMKGSEAHVTVNIVSQMISSTFDKDGKL 194 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 I DPE ++ D+WTF R+ +PNW L++T+ + Sbjct: 195 IDGDPENVLEIKDLWTFARDTRSRDPNWKLVATEAED 231 >gi|163850987|ref|YP_001639030.1| import inner membrane translocase subunit Tim44 [Methylobacterium extorquens PA1] gi|218529814|ref|YP_002420630.1| import inner membrane translocase subunit Tim44 [Methylobacterium chloromethanicum CM4] gi|240138118|ref|YP_002962590.1| hypothetical protein MexAM1_META1p1451 [Methylobacterium extorquens AM1] gi|254560680|ref|YP_003067775.1| hypothetical protein METDI2225 [Methylobacterium extorquens DM4] gi|163662592|gb|ABY29959.1| import inner membrane translocase subunit Tim44 [Methylobacterium extorquens PA1] gi|218522117|gb|ACK82702.1| import inner membrane translocase subunit Tim44 [Methylobacterium chloromethanicum CM4] gi|240008087|gb|ACS39313.1| conserved hypothetical protein, putative membrane protein [Methylobacterium extorquens AM1] gi|254267958|emb|CAX23826.1| conserved hypothetical protein, putative membrane protein [Methylobacterium extorquens DM4] Length = 239 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 105/236 (44%), Gaps = 11/236 (4%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 DS D L+F + FV +LR VLG+KTG E+ + + Sbjct: 3 DSFDATTLIFLALAVFVIWRLRSVLGQKTGTERSPFRPVERNRTEPPAGRGEGDNVVRLP 62 Query: 67 KKDNLD-----------SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115 D + G+ + + + +V + F+P+ FL A+ +YE IV Sbjct: 63 GADRSPAGAAAVQTAARDWRGIAEPGSAVARGLEQVVQLEPAFEPRAFLEGAKGAYETIV 122 Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY 175 +F +G + L+ V + F ++S R+ + +++ + ID +I ++ Sbjct: 123 TAFAKGDRKTLRALLSREVCEGFERAISEREKRNETAETTFISIDKAEIAAVEVKNRAAQ 182 Query: 176 ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 IT+R + I+A+ D D +I + E +V D+WTF R + +PNW L++T G Sbjct: 183 ITVRFLSNLITATRDADGKVIDGNAETGVEVPDVWTFARTLGSRDPNWQLVATDAG 238 >gi|159184122|ref|NP_353048.2| hypothetical protein Atu0008 [Agrobacterium tumefaciens str. C58] gi|159139459|gb|AAK85833.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 217 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 82/217 (37%), Positives = 123/217 (56%), Gaps = 5/217 (2%) Query: 21 FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL-----GKGKKKDNLDSIN 75 +F QLR VLG++TGNEKP +S + V + G+ ++ + + Sbjct: 1 MLIFFQLRSVLGRRTGNEKPPFDPYSPRDVAKGPVADDNKVVTLPKRGEAEEDNRFAEAD 60 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 L P T LN +RD+++ F PK+FLN AR +YE IV F +G ++ L+ V+ Sbjct: 61 ALAPADTPLNASLRDVMTKDPSFRPKEFLNGARMAYEMIVMGFADGDRKTLKNLLSKEVF 120 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 F ++S R+S + VKS+ VGI+ I A + ++ V +T+RIV Q ISA+YDKD L Sbjct: 121 DGFEAAISERESRGEVVKSTFVGIEKADITQAGVRDSEVQVTLRIVSQLISATYDKDGKL 180 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + DPE +V DIWTF R+I +PNW LI+T+ + Sbjct: 181 VDGDPEAVAEVDDIWTFSRDIRSRDPNWKLIATESEQ 217 >gi|188580934|ref|YP_001924379.1| import inner membrane translocase subunit Tim44 [Methylobacterium populi BJ001] gi|179344432|gb|ACB79844.1| import inner membrane translocase subunit Tim44 [Methylobacterium populi BJ001] Length = 242 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 14/239 (5%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 DS D L+F + FV +LR VLG+KTG E+ + + Sbjct: 3 DSFDATTLIFLALAVFVIWRLRSVLGQKTGTERSPFRPVERNRTEPPAGRGEGDNVVRLP 62 Query: 67 KKD--------------NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 D + + + + + +V V FDP+ FL A+ +YE Sbjct: 63 GADRAQAGAQAGTATQTATRDWRGIAEPNSAVARGLEQVVQVEPGFDPRAFLEGAKGAYE 122 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 IV +F +G + L+ V + F ++S R+ + +++ + ID +I ++ Sbjct: 123 TIVTAFAKGDRKTLRALLSREVCEGFERAISEREKRRETAETTFISIDKAEIAAVEVKNR 182 Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 IT+R + I+A+ D D +I + E +V D+WTF R + +PNW L++T G Sbjct: 183 AAQITVRFLSNLITATRDADGKVIDGNAETGVEVPDVWTFARTLGSRDPNWQLVATDAG 241 >gi|85705737|ref|ZP_01036834.1| transporter, Tim44 family protein [Roseovarius sp. 217] gi|85669727|gb|EAQ24591.1| transporter, Tim44 family protein [Roseovarius sp. 217] Length = 219 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 105/225 (46%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G E P R + G Sbjct: 1 MNSPILQLLVLAGIAIFLILRLKSVLGTRDGFEGPARNA----PTPETSRRREFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D +D + P + + D+ + DF FL AR +YE I+ +F GK+ Sbjct: 57 PDHDIVDHV----PEDSEAAGALADMKRIEPDFSVTTFLQGARGAYEMILMAFERGKLDE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183 I +D VY+ F + +R+ ++++ +G+ ++ + +A + T IT+R VG+ Sbjct: 113 ITPFLDREVYETFAQVVDSREQQGLSIEAEFIGVRELSLFDAKFDAATRRAEITVRYVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 +S D + ++ P + DIWT+ R + +PNW L++T Sbjct: 173 LVSVVRDSNGEIVEGAPGQSKRQKDIWTYERIMGSDDPNWRLVAT 217 >gi|254512041|ref|ZP_05124108.1| transporter, Tim44 family [Rhodobacteraceae bacterium KLH11] gi|221535752|gb|EEE38740.1| transporter, Tim44 family [Rhodobacteraceae bacterium KLH11] Length = 219 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 104/227 (45%), Gaps = 10/227 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EKP + + R + G Sbjct: 1 MNSPLIQLLVLAGIAIFLILRLKSVLGTREGFEKPP----LQQQRDTNDARRDFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D + E + + + + V F +F+ AR +YE IV F +G + Sbjct: 57 PDHDITDHVAE----DSEQAETLTAMKRVEPSFSVSEFVQGARGAYEMIVMGFEKGNLDE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183 I+ + V+ F ++ R+ +++ +G+ + + + +++T IT+R +G+ Sbjct: 113 IQPFLSEEVFDTFVSVVADREDKGLTIEAEFIGVRETTLADVKFDKDTNQAEITMRFIGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S D+ +I +P + D WTF R + +PNW+L++T Sbjct: 173 LTSVVRDRGGDIIEGNPNTVKRQKDSWTFARVMGLDDPNWLLVATDA 219 >gi|83950785|ref|ZP_00959518.1| transporter, Tim44 family protein [Roseovarius nubinhibens ISM] gi|83838684|gb|EAP77980.1| transporter, Tim44 family protein [Roseovarius nubinhibens ISM] Length = 214 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 104/221 (47%), Gaps = 11/221 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 +L+ A I F+ L+LR VLG + G E P S + + +G + G D Sbjct: 1 MLQLLVLAGIAIFLLLRLRSVLGTRDGFEPPRS-----ELPGAPDRRQGFEVIEGGPDLD 55 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 D + P + + ++ + F +FL+ +R +YE I+ SF GK+ I Sbjct: 56 ITDHV----PEDSDAAAALAEMKRIEPSFSVSEFLSGSRQAYEWILMSFENGKLDEIVPF 111 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQFISA 187 + V++ F + R+ V++ G+ D+ +I+A++++ T IT++ +G+ S Sbjct: 112 LSPDVHEAFAQVIDARQEKNLTVEAEFYGVRDVTLIDAALDDTTKAAEITVKFLGELSSV 171 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 ++ +I P + D WTF R + +PNW L++T Sbjct: 172 VRNEQGEIIEGTPGEPKRQKDTWTFERVMGSDDPNWRLVAT 212 >gi|254440619|ref|ZP_05054113.1| Tim44-like domain family [Octadecabacter antarcticus 307] gi|198256065|gb|EDY80379.1| Tim44-like domain family [Octadecabacter antarcticus 307] Length = 219 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 109/225 (48%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+LR VLG + G EKP + S+R + + G Sbjct: 1 MNSPVLQLLVLAGIAIFLILRLRNVLGTREGFEKPKVAPA----IPSRRPTPDLEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D ++ + + +V+ + + F+ ++FL AR +YE I+ F +G + Sbjct: 57 PDPDVTDYVD----ADSDVARVLTAMKTADRSFNVREFLRGARGAYEMILTGFEKGDIAE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183 I+ + S VY F + R+ + +V +GI + +++A +E T I+I+ + + Sbjct: 113 IKPFLSSDVYDAFAGVVEAREKDGLSVDFKFIGISETTLVDAEFDETTKNAEISIKFLCE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 SA YDK L K D+WTF R + +PNW L++T Sbjct: 173 STSAVYDKGGDLKEGSATDIKKQRDVWTFGRTMGTGDPNWFLVAT 217 >gi|254450565|ref|ZP_05064002.1| transporter, Tim44 family [Octadecabacter antarcticus 238] gi|198264971|gb|EDY89241.1| transporter, Tim44 family [Octadecabacter antarcticus 238] Length = 224 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 10/230 (4%) Query: 1 MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60 M M+S +L+ A I F+ L+LR VLG + G EKP + + ++R + Sbjct: 1 MKETHMNSPVLQLLVLAGIAIFLILRLRNVLGTREGFEKPKAPPA----IPTRRFGPDLE 56 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 + G D D ++ + + K + + + F+ ++FL AR +YE I+ F + Sbjct: 57 VIEGGPDPDVTDYVD----ADSDMAKALTAMKTADRSFNVREFLRGARGAYEMILTGFEK 112 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITI 178 G + I+ + S VY F + +R+ + ++ +GI + +++A +E T ITI Sbjct: 113 GDLAEIKPFLSSDVYDAFAGVVESREKDGLSIDFKFIGISETTLVDAEFDETTKNAEITI 172 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + + + SA YD L P K D+WTF R + +PNW L++T Sbjct: 173 KFLNESTSAVYDNGGDLKEGSPTEIKKQRDVWTFGRTMGTGDPNWFLVAT 222 >gi|84684638|ref|ZP_01012539.1| hypothetical protein 1099457000260_RB2654_13474 [Maritimibacter alkaliphilus HTCC2654] gi|84667617|gb|EAQ14086.1| hypothetical protein RB2654_13474 [Rhodobacterales bacterium HTCC2654] Length = 219 Score = 175 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M S +++ A I F+ L+LR VLG + G EKP + V + + G Sbjct: 1 MSSPIIQLIVLAAIAIFLILRLRDVLGTREGFEKPVVSRTESQRVD---NRGKFEVIEGG 57 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D + + I + + + F DFLN AR +YE I+ +F G++ Sbjct: 58 PDTDITDHVEDPASI-----EALAKMKGAERSFAVGDFLNGARGAYEMILMAFEAGELDK 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183 I+ + VY+ F + R+ + + ++ VG+ +MK++ A ++ ITIR +G+ Sbjct: 113 IKPFLSDEVYESFATVVEQREKDGYKIDANFVGLREMKLVEAEFDDESREGEITIRFIGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 S DK ++ +P + D+WTF R + NPNW L++T Sbjct: 173 ITSVVRDKSGEIVEGNPTEVKRQKDVWTFARIMGSENPNWQLVAT 217 >gi|163738003|ref|ZP_02145419.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis BS107] gi|163742601|ref|ZP_02149987.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis 2.10] gi|161384186|gb|EDQ08569.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis 2.10] gi|161388619|gb|EDQ12972.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis BS107] Length = 218 Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 105/227 (46%), Gaps = 11/227 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EKP + + + G Sbjct: 1 MESPVIQLLVLAGIAVFLILRLKSVLGTREGFEKPAVPQADRQ-----NRRPELEVIEGG 55 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D +D + E P + + + F+ +DF+ AR +YE I+ +F G++ Sbjct: 56 PDHDIVDYVPEDSPQASD----LAAMKKAEPSFEVRDFVQGARGAYEMILMAFERGELDD 111 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQ 183 IE + V+ F +++ R+ +++ +G+ + + + S + T IT+R V + Sbjct: 112 IEAFLAPDVFDSFVTAVAHREDQGLTIEAEFIGVRETTLTDTSFDPATGDAQITMRFVAE 171 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S D+ ++ DP+ + D W F R + ++PNW L++T Sbjct: 172 LTSVVRDRGGDIVEGDPKAVKRQKDTWVFGRTMGSADPNWHLVATDA 218 >gi|304392739|ref|ZP_07374679.1| import inner membrane translocase, subunit Tim44 [Ahrensia sp. R2A130] gi|303295369|gb|EFL89729.1| import inner membrane translocase, subunit Tim44 [Ahrensia sp. R2A130] Length = 230 Score = 174 bits (440), Expect = 9e-42, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 100/229 (43%), Gaps = 8/229 (3%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF--------SKRDERGIIT 61 D LL F+F +LR VLG + G EKP ++ Sbjct: 2 DLFTLLPLLAAVFLFWKLRSVLGTRNGIEKPPYDPYTNDPNEAADNVVTLPGAKRANAPD 61 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 + + I +L L + + I S FDP++FL R +YE IV F +G Sbjct: 62 AEEDAGEAARKRIGKLAGKDKSLERGLLAIHSRDPGFDPEEFLQGGRMAYEMIVTGFADG 121 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 +E L+ VY+ F + R + V +S VGID I A + + IT+R V Sbjct: 122 DKRTLENLLSREVYESFATVIDERSERGEKVNASFVGIDKAVIEGAEVLRDEAQITVRFV 181 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + ISA+ D + +I D + +V D+WTF R + +PNW L++T Sbjct: 182 SEMISATLDSSDEVIEGDLQEVAEVTDVWTFARPVKSRDPNWKLVATDA 230 >gi|254455846|ref|ZP_05069275.1| import inner membrane translocase, subunit Tim44 [Candidatus Pelagibacter sp. HTCC7211] gi|207082848|gb|EDZ60274.1| import inner membrane translocase, subunit Tim44 [Candidatus Pelagibacter sp. HTCC7211] Length = 198 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 33/227 (14%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 + I+L A I F+FL+LRG+LGK+TG E + F Sbjct: 1 MSYSFEYIDIILLAMIAGFIFLRLRGILGKRTGFEGKAAPQFDKILKE------------ 48 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 + K + + K+F+ A+ +YE I+ F + Sbjct: 49 -------------------AVAKQAPVNNETFDENAQKEFIKGAKIAYETIITDFSDNDN 89 Query: 124 H--AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 + L++ +Y FND+L R + + +GI+ I + + +T+ + Sbjct: 90 KLTTSKPLLNKEIYDQFNDALKERSERGHYAEITFIGINSATIKEHKKIDKILNVTVDFI 149 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + I+ DKD +IS DPE K+ D W F R++ NPNW L++T Sbjct: 150 AEVITCIKDKDKKIISGDPEKIKKIYDTWVFSRDVTSPNPNWQLVNT 196 >gi|254476055|ref|ZP_05089441.1| transporter, Tim44 family [Ruegeria sp. R11] gi|214030298|gb|EEB71133.1| transporter, Tim44 family [Ruegeria sp. R11] Length = 214 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 101/223 (45%), Gaps = 11/223 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 +L+ A I F+ L+L+ VLG + G EKP + + G +D Sbjct: 1 MIQLLVLAGIAVFLILRLKSVLGTREGFEKPIAP-----PAERPSKRPEFEVIEGGPDQD 55 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 D + P G+ + + + V F +DF+ AR +YE I+ +F G++ I+ Sbjct: 56 ITDYV----PEGSAQAEDLAAMKKVEPSFQVRDFVQGARGAYEMILMAFERGELDDIQPY 111 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQFISA 187 + V+ F +++ R+ +++ +G+ + + + S + T IT+R V + S Sbjct: 112 LAPDVFDSFVTAVAHREDQGLTIEADFIGVRETTLTDTSYDSVTGEAQITMRFVAEMTSV 171 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + ++ DP+ + D W F R + S+PNW L++T Sbjct: 172 VRNSAGEIVEGDPKAIKRQKDTWVFGRTMGSSDPNWFLVATDA 214 >gi|259417909|ref|ZP_05741828.1| import inner membrane translocase, subunit Tim44 [Silicibacter sp. TrichCH4B] gi|259346815|gb|EEW58629.1| import inner membrane translocase, subunit Tim44 [Silicibacter sp. TrichCH4B] Length = 218 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 57/227 (25%), Positives = 113/227 (49%), Gaps = 11/227 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EKP + +R + Sbjct: 1 MESPLIELLVLAGIAVFLILRLKSVLGTREGFEKPPLANN-----EAPAPQRKFEVIEGS 55 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D + ++E G+ + + D+ + F +F+ AR +YE I+ F G++ Sbjct: 56 PDDDIVAYVDE----GSPQAQALSDMKRADSSFQVAEFVQGARGAYEMILMGFETGELDG 111 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQ 183 I+ + ++Q F D++S R+ +++ +G+ + I++A+ + +T +T+R VG+ Sbjct: 112 IQPFISEEIFQSFVDAVSAREDQGLTIEAEFIGVRETTIVDATFDAATSTAEVTVRFVGE 171 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 SA ++ ++ DP+ + D WTF R + +PNW+L++T Sbjct: 172 LTSAVRNRAGEIVEGDPKAVKRQKDTWTFSRQMGTGDPNWLLVATDA 218 >gi|99082695|ref|YP_614849.1| import inner membrane translocase, subunit Tim44 [Ruegeria sp. TM1040] gi|99038975|gb|ABF65587.1| import inner membrane translocase subunit Tim44 [Ruegeria sp. TM1040] Length = 218 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 60/227 (26%), Positives = 114/227 (50%), Gaps = 11/227 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+L+ VLG + G EKP ++ +R + Sbjct: 1 MESPLIELLVLAGIAVFLILRLKSVLGTREGFEKPPLAS-----SETRAPQRKFEVIEGS 55 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D + ++E G+ +K + D+ + F +F+ AR +YE I+ F G++ Sbjct: 56 PDDDIIAYVDE----GSPQSKALSDMKRSDSSFQVAEFVQGARGAYEMILMGFETGELDG 111 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183 I+ + ++Q F D++S R+ +++ +G+ + II+A+ + T IT+R VG+ Sbjct: 112 IQPFISDDIFQSFVDAVSAREDQGLTIEAEFIGVRETSIIDATFDTATSTAEITVRFVGE 171 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 SA ++ ++ DP+ + D WTF R + +PNW+L++T Sbjct: 172 LTSAVRNRAGEIVEGDPKAVKRQKDTWTFSRQMGTGDPNWLLVATDA 218 >gi|86136747|ref|ZP_01055325.1| transporter, Tim44 family protein [Roseobacter sp. MED193] gi|85826071|gb|EAQ46268.1| transporter, Tim44 family protein [Roseobacter sp. MED193] Length = 218 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 111/226 (49%), Gaps = 11/226 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M+S +L+ A I F+ L+LR VLG + G EKP + + + + G Sbjct: 1 MESPLISLLVLAGIAVFLILRLRSVLGTREGFEKPPVA-----PTQKRSNGPDLEVIEGG 55 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 +D D + G+ K + + V F +F+ AR++YE I+ F +G++ Sbjct: 56 PDRDITDYV----EEGSDQAKALAAMKRVEPSFQVGEFVQGARSAYEMILMGFEKGELDD 111 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQ 183 I+ + V+ F ++++ R+ +++ +G+ + +++A +E T +T+R +G+ Sbjct: 112 IQGFLAEDVFDSFVEAVAQREDQGLTIEAEFIGVRETAVVDAIFDETTGVAELTMRFIGE 171 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 S +++ ++ D + + DIW F R++ +PNW L++T Sbjct: 172 MTSVVRNREGEIVEGDAKAIKRQKDIWVFARSMGVDDPNWQLVATD 217 >gi|294675588|ref|YP_003576203.1| import inner membrane translocase subunit Tim44 [Rhodobacter capsulatus SB 1003] gi|294474408|gb|ADE83796.1| import inner membrane translocase, subunit Tim44 [Rhodobacter capsulatus SB 1003] Length = 219 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M F +++ A I F+ L+L+ VLG + G E R + G Sbjct: 1 MSPALFQLIVLAAIAIFLILKLKSVLGTREGYEDEPMPV----EAPGPRAADRFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D +D + P G+ + + V F+ FL ++ +YE I+ +F G + A Sbjct: 57 PDHDIIDHV----PEGSDAAVALAQMKRVEPTFNVGAFLQGSKVAYEMILMAFERGDLSA 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183 + + + V + F +++ R+ V++S +G+ ++ + AS E +T+R G+ Sbjct: 113 VRRFLAPEVLEAFETAVADRQRQGLTVEASFLGLRELVLTEASFNESSREAEVTVRFGGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 IS + D + ++ DP+ K D WTF R + S+PNW L++T Sbjct: 173 LISVARDANGQIVEGDPKAPRKQRDSWTFARVMGSSDPNWQLVAT 217 >gi|90420989|ref|ZP_01228893.1| conserved hypothetical protein, Tim44 domain [Aurantimonas manganoxydans SI85-9A1] gi|90334767|gb|EAS48543.1| conserved hypothetical protein, Tim44 domain [Aurantimonas manganoxydans SI85-9A1] Length = 238 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 76/240 (31%), Positives = 118/240 (49%), Gaps = 16/240 (6%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI------ 59 M G ++ A I F QLR VLGK+TGNE+P +S + R Sbjct: 1 MSFGTIFFIIVAAIVLF---QLRSVLGKRTGNERPPFDPYSRRDAPRDDAARNDNVVTLP 57 Query: 60 -------ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 I ++I+++ GT +N +R I FDPK+FL+ A+ +YE Sbjct: 58 NRRGGTEIEGEAAPAATPYEAIDKVAKPGTPVNAELRRIRDADPSFDPKEFLDGAKVAYE 117 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 IV +F +G ++ L+ VYQ F ++S R+ ++ ++ S VGIDD I+ A ++ Sbjct: 118 MIVTAFADGDRKLLKNLLSPDVYQGFEQAISEREQRDERMQFSFVGIDDATIVGAEQKDR 177 Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +T+RIV Q ISA D ++ D E +V D+WTF R+ +PNW L T+ + Sbjct: 178 EAMVTLRIVAQVISAVVKPDETVVDGDLETVVEVKDVWTFARDTRSRDPNWKLAGTESED 237 >gi|126730112|ref|ZP_01745924.1| transporter, Tim44 family protein [Sagittula stellata E-37] gi|126709492|gb|EBA08546.1| transporter, Tim44 family protein [Sagittula stellata E-37] Length = 219 Score = 172 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 10/227 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M + +L+ A I F+ L+LR VLG + G E+P + R + G Sbjct: 1 MQNPLLQLLVLAGIAVFLVLRLRSVLGTRDGFERP----TPAEKSKETTSRREFEVIEGG 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D D + E GT + + V F +FL AR +YE I+ F G + Sbjct: 57 PDHDITDHVAE----GTDAANALAAMKRVEPSFSVSEFLGGARGAYEMILMGFERGDIEG 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183 ++ + V++ F++ + R+S + + VG+ +M + AS + +T IT+R VG+ Sbjct: 113 LKPFLADDVFETFSEVVEARESEGLTIDADFVGVREMTLAGASFDPDTREAEITVRYVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S + + ++ P + DIWT+ R + +PNW L++T Sbjct: 173 LTSVVKNAEGEIVEGSPTAVKRQKDIWTYARTMGADDPNWQLVATDE 219 >gi|119385510|ref|YP_916566.1| import inner membrane translocase, subunit Tim44 [Paracoccus denitrificans PD1222] gi|119375277|gb|ABL70870.1| import inner membrane translocase, subunit Tim44 [Paracoccus denitrificans PD1222] Length = 218 Score = 172 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 10/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M + +L+ A I F+ L+LRGVLG + G E P + + +R + G Sbjct: 1 MSNPLLQLLVLAAIAVFLILRLRGVLGTRDGFESP--------RIPEEPVQRRRFDVIDG 52 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + I + G+ K + ++ + DF FL+ A+++YE I+ +F G + Sbjct: 53 TAEAGDSDITDHAEPGSPAAKALAEMKRIEPDFAVGPFLSGAKSAYEMILMAFERGDLSE 112 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183 + + V + F + RK+ ++ +G + + A T +++R VG+ Sbjct: 113 VRGFLAPPVAEAFESVIEDRKARNLTTEAQFLGTRETALAGAEFTPATGMAELSVRFVGE 172 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 I A+ D D +I DP+ K D WTF R + +PNW L++T Sbjct: 173 MIVATRDADGNVIEGDPKAARKQRDTWTFARRMGQDDPNWQLVAT 217 >gi|94498195|ref|ZP_01304756.1| import inner membrane translocase, subunit Tim44 [Sphingomonas sp. SKA58] gi|94422325|gb|EAT07365.1| import inner membrane translocase, subunit Tim44 [Sphingomonas sp. SKA58] Length = 217 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 56/222 (25%), Positives = 108/222 (48%), Gaps = 5/222 (2%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 ++I++ A I F+ L+L VLGK+TG+E+ + + + G G G Sbjct: 1 MYVIVILAMIAGFLALRLYSVLGKRTGHEQEPALRPAEDRAKVTVLQPGPTNHGGGDTVR 60 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + + I +R +++ +FD F+ AR++Y+ ++++F+ G + L Sbjct: 61 LAEGL-----IAPGAETGVRTLIATDRNFDVPQFVEGARSAYKMVLEAFWRGDREELAWL 115 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 D+ V F D+++ R+++ + + LV I+ +II A++ + T I +R + + Sbjct: 116 CDADVLASFEDAIAAREADGHVLDNRLVRIEKAQIIEATVRDGTAEIAMRFEADIAAVTR 175 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 D+D +I+ DIWTF R+I ++PNW L T Sbjct: 176 DRDGNVIAGSMTDAIDTKDIWTFTRDIRSADPNWKLSETDEA 217 >gi|217977326|ref|YP_002361473.1| import inner membrane translocase subunit Tim44 [Methylocella silvestris BL2] gi|217502702|gb|ACK50111.1| import inner membrane translocase subunit Tim44 [Methylocella silvestris BL2] Length = 239 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 62/233 (26%), Positives = 104/233 (44%), Gaps = 11/233 (4%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII------ 60 +S D ++FA + FV +LR +LG +TG EKP F + + Sbjct: 3 NSFDVSTIIFALLAAFVVWKLRSILGARTGTEKPPRNPFIAGEPSAAKRPGEGEGKVIPL 62 Query: 61 -----TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115 + + D G++ + I + F+ K FL A+ +YE IV Sbjct: 63 PGASAPIAQAAAADPSSRWKPHAEPGSKAWAGLDAIAAADRSFEIKSFLEGAKTAYEMIV 122 Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY 175 F +G ++ L+D VY F +L+ R+ +++S V ID+ I +A + Sbjct: 123 IGFADGDRPMLQNLLDKSVYDSFVTALTEREKRGDKIETSFVAIDNGAIADAELNGRMAE 182 Query: 176 ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 I +R Q I+A+ + +I +PE ++ D W F R++ +PNW LIST Sbjct: 183 IAVRFSAQIITATRNAAGTVIEGNPEQVVEINDTWRFARDVGARDPNWRLIST 235 >gi|71083043|ref|YP_265762.1| translocase [Candidatus Pelagibacter ubique HTCC1062] gi|71062156|gb|AAZ21159.1| Putative translocase transmembrane protein with Tim44 Pfam domain [Candidatus Pelagibacter ubique HTCC1062] Length = 197 Score = 171 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 34/227 (14%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 + I+L A I F+FL+LRG+LGKKTG E F ++ Sbjct: 1 MSYSFEYIDIILLAMIAGFIFLRLRGILGKKTGFEGKIPPQFEKEFQ------------- 47 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 + N + + + + K+FL A+ +YE I+ F + Sbjct: 48 -------------------KTNITPKPVSENFDEVSQKEFLKGAKIAYETIITDFSDSDN 88 Query: 124 H--AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 A + L+ ++Y F ++L R + + + +GI I E+++ +T+ V Sbjct: 89 KLIASKPLLSKKIYDQFKEALEDRANKGHFAEITFIGIKSAVIKTHKKIEDSLEVTVDFV 148 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + I+ DKD ++S D + V D W F ++I SNPNW+LI+T Sbjct: 149 SEIITCIKDKDKNIVSGDSDKIKTVYDTWVFSKDIKSSNPNWLLINT 195 >gi|332186336|ref|ZP_08388081.1| tim44-like domain protein [Sphingomonas sp. S17] gi|332013704|gb|EGI55764.1| tim44-like domain protein [Sphingomonas sp. S17] Length = 257 Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 107/221 (48%), Gaps = 7/221 (3%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 F ++L A + F+ L+L VLGK+TG+E+ + D + L + + Sbjct: 44 FYVVLLAMVALFLALRLYSVLGKRTGHEQQPLPRSAD-------DRARPVVLPRAAEPAQ 96 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + I R + +R I++ FD FL A+++Y +++F++G A+ +LV Sbjct: 97 SPAPVANRNIDPRAEQGLRAIIAGEPGFDVNQFLGGAQSAYRMTLEAFWKGDEQALAELV 156 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 D+ V F ++++ R+ + + + L+ +D KI+++ + IT+R ++ + D Sbjct: 157 DTDVLGAFAEAIAQRQEAGETLDNRLIRVDSAKIVDSQLAGRDARITVRFDADIVAVTRD 216 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + +I+ + DIWTF R + +PNW L+ T Sbjct: 217 AEGQVIAGSLSDAVETHDIWTFARTLKSGDPNWKLVDTDEA 257 >gi|307294078|ref|ZP_07573922.1| import inner membrane translocase subunit Tim44 [Sphingobium chlorophenolicum L-1] gi|306880229|gb|EFN11446.1| import inner membrane translocase subunit Tim44 [Sphingobium chlorophenolicum L-1] Length = 218 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 5/222 (2%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 ++I++ A I F+ L+L VLGK+TG+E+ + + + + +T G Sbjct: 1 MYVIVILAMIAGFLALRLYSVLGKRTGHEQEPALRPAEERAKVTIVQPRPVTEMAGDSVR 60 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 D + I +R +++ +FD F+ A+++Y ++++F+ G +E L Sbjct: 61 LADGL-----IAPGGEAGVRALIAADRNFDVPQFVEGAKSAYRMVLEAFWRGDRQELEWL 115 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 D+ V F D+++ R++ + + LV I+ ++I++A + I++R + + Sbjct: 116 CDADVLASFQDAITAREAEGHVLDNRLVRIEKVQIVDAGVTGRMAEISLRFEADIAAVTR 175 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 D+D +++ DIWTF R++ ++PNW L T Sbjct: 176 DRDGNVVAGSLTDAVGTNDIWTFTRDLRSTDPNWKLSETDEA 217 >gi|91762532|ref|ZP_01264497.1| Putative translocase transmembrane protein with Tim44 Pfam domain [Candidatus Pelagibacter ubique HTCC1002] gi|91718334|gb|EAS84984.1| Putative translocase transmembrane protein with Tim44 Pfam domain [Candidatus Pelagibacter ubique HTCC1002] Length = 197 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 34/227 (14%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 + I+L A I F+FL+LRG+LGKKTG E F ++ Sbjct: 1 MSYSFEYIDIILLAMIAGFIFLRLRGILGKKTGFEGKIPPQFEKEFQ------------- 47 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 + N + + + + K+FL A+ +YE I+ F + Sbjct: 48 -------------------KTNITPKPVSENFDEVSQKEFLKGAKIAYETIITDFSDSDN 88 Query: 124 H--AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 A + L++ ++Y F ++L R + + + +GI I E+++ +T+ V Sbjct: 89 KLIASKPLLNKKIYDQFKEALEDRANKGHFAEITFIGIKSAVIKTHKKIEDSLEVTVDFV 148 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + I+ DKD ++S D + V D W F ++I SNPNW+LI+T Sbjct: 149 SEIITCIKDKDKNIVSGDSDKIKTVYDTWVFSKDIKSSNPNWLLINT 195 >gi|85709415|ref|ZP_01040480.1| hypothetical protein NAP1_11058 [Erythrobacter sp. NAP1] gi|85688125|gb|EAQ28129.1| hypothetical protein NAP1_11058 [Erythrobacter sp. NAP1] Length = 219 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 106/222 (47%), Gaps = 4/222 (1%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 I++ A I F+ L+L VLG++ +E+ + + + + + Sbjct: 2 ILEIVILAMIAAFLGLRLYSVLGRRAEHEE----ESVPQRFDAGDKPQAQPPIAGQPAQP 57 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 EL + + + +R+I S FD F++ A+ +YE +++ F+EG + +L Sbjct: 58 APQRSIELEGVMPAVERGVREIASADRSFDIGQFMDGAKGAYEMVLEGFWEGDKDTLREL 117 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 D VY F+ ++ R+ + + L+ I++ +I +AS++ I + V + + Sbjct: 118 CDDDVYAGFSAAIDAREEAGHTLDNKLIRIEETRIHSASMDGRMARIAVLFVADIAAVTR 177 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 DKD ++++ + + D+WTF RNI +PNWVL T G Sbjct: 178 DKDGVVVAGSLDDAIESRDVWTFSRNIGSRDPNWVLDETDEG 219 >gi|110677837|ref|YP_680844.1| hypothetical protein RD1_0444 [Roseobacter denitrificans OCh 114] gi|109453953|gb|ABG30158.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 220 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 108/225 (48%), Gaps = 10/225 (4%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 S +L+ A I F+ +L+ VLG + G E + + + R + G Sbjct: 3 SSPLIQLLVLAGIAVFLIFRLKNVLGTRDGFEPGPAQAPTSDRSPT----RDFEVIEGGP 58 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 D D ++E + + + ++ + F+ +FL AR +YE IV + G++ I Sbjct: 59 DLDITDHVDEH----SDAAEALANMKRLEPGFNVTEFLGGARGAYEMIVMGYENGELADI 114 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQF 184 + + +Y+ F D ++ R+ ++++ +G+ ++K+I+A+++ +T +TIR + Sbjct: 115 QPFLAEDIYESFVDGVAAREDQGLTIEANFIGVRELKLIDATLDPDTNEAELTIRFTAEL 174 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 SA + + +I + D W+F R + +PNW+L+ST Sbjct: 175 TSAVRNSEGEIIEGSLTDVKRQKDTWSFARPMGSDDPNWILVSTD 219 >gi|148259158|ref|YP_001233285.1| import inner membrane translocase, subunit Tim44 [Acidiphilium cryptum JF-5] gi|326402311|ref|YP_004282392.1| putative transporter [Acidiphilium multivorum AIU301] gi|146400839|gb|ABQ29366.1| import inner membrane translocase, subunit Tim44 [Acidiphilium cryptum JF-5] gi|325049172|dbj|BAJ79510.1| putative transporter [Acidiphilium multivorum AIU301] Length = 221 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 6/221 (2%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 I+L A + F+ L+LR VLG++TG E+P + + I + + + Sbjct: 7 VDIVLLALVAGFLVLRLRSVLGRRTGYERPPMPEPTAAGGMQRPGGPVIEGVAEPPRS-- 64 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + T + + + I FDP FL+ A S+ IV +F G + A+ L+ Sbjct: 65 ---TRPVPAPHTVVGQTLARIAQAERGFDPARFLDGAEASFRRIVLAFAAGDLAALRPLL 121 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 V+ F +++ R + + +V I + I A + I +R V + + D Sbjct: 122 TPGVFATFEQAVAQRAEAGETQHTEIVRIVEATIDEAELLGGEAVIVVRFVSDQQNYTRD 181 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + +I+ E +++D+W+F +++ ++P W L + + G Sbjct: 182 RQGQVIAG-TEAMTEIVDLWSFEKSLGAADPTWRLAAARSG 221 >gi|319407969|emb|CBI81623.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 230 Score = 168 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 130/231 (56%), Gaps = 5/231 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIIT 61 M+ D ++++ I VF+QLR VLGK+TG E+P +SG + D Sbjct: 1 MEF-DVVLVIALVIMVVVFMQLRNVLGKRTGFERPPFDPYSGCSKKQIETETVDHSLSFP 59 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 +K + I+ + P G+ LN +R I ++F P+ F+N + +YE I+ +F +G Sbjct: 60 HQANARKKDFSEIDAIAPEGSALNDGLRAICQADSNFSPQFFVNGVQIAYEMIMTAFAQG 119 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 ++KL+ V++ F ++ R+ E+ V+ + VGI+ ++ + A +++N ++T+RIV Sbjct: 120 DRDQLKKLLSQDVFESFCAAIERREKREEKVEFTFVGINKVEFVAAEMQKNEEFLTVRIV 179 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + IS +Y+K N I DPE ++ D+WTFVRN +PNW L +T+ G+ Sbjct: 180 SEIISVTYNKQNECIDGDPEAIVEIKDVWTFVRNSLSQDPNWKLFATEDGD 230 >gi|49474924|ref|YP_032965.1| hypothetical protein BH01040 [Bartonella henselae str. Houston-1] gi|49237729|emb|CAF26919.1| hypothetical protein BH01040 [Bartonella henselae str. Houston-1] Length = 230 Score = 168 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 131/231 (56%), Gaps = 5/231 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFS----KRDERGIIT 61 M+ D +++L I VF+QLR VLGK+ G EKP +S + D ++ Sbjct: 1 MEF-DIVLVLALVIMVVVFMQLRNVLGKRIGFEKPPFDPYSSRSKKQIETETADNNASLS 59 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 +K++ I+ + P G+ LNK +R + F P+ F+ A+ +YE IV +F +G Sbjct: 60 HQVNSQKNDFSEIDAIAPEGSELNKGLRALHQNDPHFSPQFFIKGAQVAYEMIVTAFAKG 119 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 + + +L+ V++ F+ ++ R+ N + V+ + VGI+ ++ + A+++E ++TIRIV Sbjct: 120 DRNQLRRLLSQDVFESFDAAIEQREKNNERVQFTFVGINKIEFVAAAMQEKEEFLTIRIV 179 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + ISA+Y++ I DP+ ++ DIWTFVRN ++PNW L +T+ + Sbjct: 180 SEMISATYNEQGERIDGDPDTIVEIRDIWTFVRNSLSTDPNWKLFATEDED 230 >gi|154251701|ref|YP_001412525.1| import inner membrane translocase subunit Tim44 [Parvibaculum lavamentivorans DS-1] gi|154155651|gb|ABS62868.1| import inner membrane translocase subunit Tim44 [Parvibaculum lavamentivorans DS-1] Length = 247 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 19/228 (8%) Query: 23 VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSK-------------------RDERGIITLG 63 VFL+LR VLG++TG+E+P +S RD Sbjct: 19 VFLKLRSVLGRRTGHERPPYDPYSENPAPGNDKVVTLPKRGRTDAPASGARDRVIDAAGD 78 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 + G+ L + I FD + FL+ AR +YE IV +F G Sbjct: 79 PFANAGARFRWRGVTEEGSPLAGALDAIADADRTFDTESFLSGARMAYEMIVTAFAAGDR 138 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 ++ L+ VY F ++S R+ + S +GID I S++ +T+ + Sbjct: 139 ATLKPLLSDDVYASFEGAISAREKAGLQIDQSFIGIDKAAITGGSLDGTRARLTVSFRSE 198 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 S++ + D +++ DP ++ D+WTF R++ +PNW L++T Sbjct: 199 LTSSTKNSDGVVVEGDPVTVREITDVWTFERDLRNRDPNWKLVATGAA 246 >gi|49473777|ref|YP_031819.1| hypothetical protein BQ00970 [Bartonella quintana str. Toulouse] gi|49239280|emb|CAF25603.1| hypothetical protein BQ00970 [Bartonella quintana str. Toulouse] Length = 230 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 128/228 (56%), Gaps = 5/228 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKR----DERGIIT 61 M+ +++L I VF+QLR VLGK+ G EKP +SG+ D Sbjct: 1 MEFN-IVLVLALVIMVVVFVQLRNVLGKRIGFEKPPFDPYSGRSKKQTETETADNIVSFP 59 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 +K++ I+ + P G+ LN+ +R + F P+ F+ A+ +YE IV +F +G Sbjct: 60 HQGNSQKNDFSEIDAISPKGSALNEGLRALRQSDPHFSPQFFIKGAQVAYEMIVTAFAKG 119 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 ++KL+ V++ F ++ R+ N + V+ + VGI+ ++ + A++++N ++T+RIV Sbjct: 120 DRDQLKKLLSQNVFESFCAAIEQREKNNERVQFTFVGINKIEFVAAAMQDNEEFLTVRIV 179 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + ISA+Y++ LI DP+ ++ D+WTFV N S+PNW L +T+ Sbjct: 180 SEMISATYNEQEELIDGDPDAIVEIRDVWTFVHNSLSSDPNWKLFATE 227 >gi|254472289|ref|ZP_05085689.1| import inner membrane translocase, subunit Tim44 [Pseudovibrio sp. JE062] gi|211958572|gb|EEA93772.1| import inner membrane translocase, subunit Tim44 [Pseudovibrio sp. JE062] Length = 248 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 117/243 (48%), Gaps = 21/243 (8%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT-------- 61 D ++F +FL+LR VLG +TGNE+ +S + + + Sbjct: 6 DVYNIIFLIAAVVIFLRLRSVLGNRTGNERQPFDPYSAQQKQDSQKTQAPENEDNVIPLP 65 Query: 62 -----------LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNS 110 + ++ I+++ GT LN +R+I F+PK+F+ AR + Sbjct: 66 GSEHVHHDPERAEREAREQIEAEIDKVAKKGTDLNHGLREIWKAEPSFNPKEFVEGARGA 125 Query: 111 YEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE 170 YE I+ SF +G ++ L+ V+ F+ ++ R+S + V+S+ VGID I+ A Sbjct: 126 YEIILMSFAQGDRRTLKDLLSPEVFTGFSAAIDDRESRNERVESTFVGIDKADIVEAVFN 185 Query: 171 ENTV--YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + +T+R Q I+A+ D +N ++ DP ++ DIWTF R ++PNW L++T Sbjct: 186 QKDSLAEVTVRFKSQLITATRDSENRIVDGDPTAVSELTDIWTFARVTGVNDPNWKLVAT 245 Query: 229 KLG 231 + Sbjct: 246 ESA 248 >gi|163732954|ref|ZP_02140398.1| hypothetical protein RLO149_09850 [Roseobacter litoralis Och 149] gi|161393489|gb|EDQ17814.1| hypothetical protein RLO149_09850 [Roseobacter litoralis Och 149] Length = 220 Score = 167 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 104/225 (46%), Gaps = 10/225 (4%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 S +L+ A I F+ +L+ VLG + G E S + R + G Sbjct: 3 SSPLIQLLVLAGIAVFLIFRLKNVLGTRDGFE----PGPSQTPMSDSAPMRDFEVIEGGP 58 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 D D + + + + ++ + F+ +FL AR +YE IV + G++ I Sbjct: 59 DLDITDHV----EENSDAAEALANMKRLEPGFNVTEFLGGARGAYEMIVMGYENGELADI 114 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQF 184 + + +Y+ F D ++ R+ +++S +G+ ++K+++A+++ T +TIR + Sbjct: 115 QPFLAEDIYESFVDGVAAREDQGLTIEASFIGVRELKLMDATLDPETNEGELTIRFTAEL 174 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 SA + + +I + D W+F R + +PNW+L+ST Sbjct: 175 TSAVRNSEGEIIEGSLTEVKRQKDTWSFARPMGSDDPNWILVSTD 219 >gi|114706069|ref|ZP_01438972.1| Calcium-binding EF-hand [Fulvimarina pelagi HTCC2506] gi|114538915|gb|EAU42036.1| Calcium-binding EF-hand [Fulvimarina pelagi HTCC2506] Length = 229 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 117/229 (51%), Gaps = 15/229 (6%) Query: 19 ITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSK---------------RDERGIITLG 63 + V QL VLG++TGNE+P ++ + + R Sbjct: 1 MAAIVLFQLYNVLGRRTGNERPPFDPYTRNRSRDRSGESEDAAGDNVVTLPNRRANDRNE 60 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 I+ + GT LNK +R I +FDPK+FL A+ +YE +VD+F +G Sbjct: 61 DVPAGVRYAEIDRVSETGTPLNKELRKIKDADPNFDPKEFLEGAKIAYEMVVDAFAQGDR 120 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 + + L+ VY+ F +++TR+ + + ++SS +GIDD KI++A + +TIRIV + Sbjct: 121 NTLRNLLSPDVYEGFEAAIATREESGETMRSSFIGIDDAKIVSAELRGREALVTIRIVSE 180 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ISA+ + + ++ D E +V DIWTF R+ +PNW L+ T+ E Sbjct: 181 MISATLNSNGDVLDGDMETVVEVRDIWTFGRDTKSRDPNWKLVGTESEE 229 >gi|294010816|ref|YP_003544276.1| hypothetical protein SJA_C1-08300 [Sphingobium japonicum UT26S] gi|292674146|dbj|BAI95664.1| conserved hypothetical protein [Sphingobium japonicum UT26S] Length = 218 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 105/222 (47%), Gaps = 5/222 (2%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 ++I++ A I F+ L+L VLGK+TG+E+ + +R + I+ + Sbjct: 1 MYVIVILAMIAGFLALRLYSVLGKRTGHEQEPALR-----PAEERAKVTIVQPRPVPEMA 55 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 I +R +++ FD F+ A+ +Y+ ++++F+ G +E L Sbjct: 56 GDSVRLSEGLIAPGGEAGVRALIAADRSFDVPQFVEGAKAAYKMVLEAFWRGDRQELEWL 115 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 D+ V F ++++ R++ + + LV I+ ++I++A + I++R + + Sbjct: 116 CDADVLASFEEAIAAREAEGHVLDNRLVRIEKVQIVDAGVTGRMAEISLRFEADIAAVTR 175 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 D+D +++ DIWTF R++ ++PNW L T Sbjct: 176 DRDGNVVAGSLTDAVGTNDIWTFTRDLRSTDPNWKLSETDEA 217 >gi|163757477|ref|ZP_02164566.1| hypothetical protein HPDFL43_18742 [Hoeflea phototrophica DFL-43] gi|162284979|gb|EDQ35261.1| hypothetical protein HPDFL43_18742 [Hoeflea phototrophica DFL-43] Length = 234 Score = 165 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 66/217 (30%), Positives = 114/217 (52%), Gaps = 7/217 (3%) Query: 23 VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG-------IITLGKGKKKDNLDSIN 75 VF+QLR VLGK+TG+E+P + +D + + D +++ Sbjct: 18 VFIQLRAVLGKRTGHERPPREQMERRDQTDAQDGIDDPKVVTLPRRGREAAEPDAFAAVD 77 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 G+ LNK +R++V F+PK+F+ A +YE IV ++ +G ++ L+ V+ Sbjct: 78 AYAEPGSDLNKGLRELVKADPSFNPKEFVGGATMAYEMIVSAYADGDRKTLKSLLSREVF 137 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 F ++ R++ + V+S+ VGI+ II A ++ +T+RI+ Q ISA+ DKD + Sbjct: 138 DGFVSAIDEREARGETVRSNFVGIEKANIIQAEMKGTEANVTLRIISQLISATLDKDGEV 197 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + D V D+WTF R+ +PNW LI+T+ + Sbjct: 198 VEGDLVEVTDVNDVWTFTRDTRSRDPNWRLIATEADQ 234 >gi|240849776|ref|YP_002971164.1| putative translocase transmembrane protein [Bartonella grahamii as4aup] gi|240266899|gb|ACS50487.1| putative translocase transmembrane protein [Bartonella grahamii as4aup] Length = 230 Score = 165 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 128/228 (56%), Gaps = 5/228 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFS----KRDERGIIT 61 M+ +++ + +F+QLR VLGK+ G EKP +S + D Sbjct: 1 MEFDVI-LVIALVVMVVIFVQLRNVLGKRIGFEKPPFDPYSRRSKKQVEAETADNIVSFP 59 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 K +KD+ I+++ P G+ LNK +R++ + F P+ F+ A+ +YE IV +F +G Sbjct: 60 HQKNSQKDDFSEIDKISPEGSILNKNLRELHKIDPQFSPQFFIKGAQIAYEMIVTAFAKG 119 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 + ++ L+ V++ F ++ R+ N++ ++ + VGI+ ++ + A+I+E +TIRIV Sbjct: 120 DRNQLKSLLCQDVFESFCTAIEQREKNKERIEFTFVGINKIEFVAAAIQEKDELLTIRIV 179 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + IS +Y++ I DP+ ++ DIWTFVRN S+PNW L +T+ Sbjct: 180 SEMISVTYNEQGERIDGDPDAIVEIRDIWTFVRNSLSSDPNWKLFATE 227 >gi|315122039|ref|YP_004062528.1| hypothetical protein CKC_01445 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495441|gb|ADR52040.1| hypothetical protein CKC_01445 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 231 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 154/231 (66%), Positives = 182/231 (78%), Gaps = 4/231 (1%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYV----FSKRDERGIIT 61 M GDFLILL FI FV L+LR LGK+TG+EKP SGF + K D +++ Sbjct: 1 MYLGDFLILLCFFIAVFVILKLRSALGKRTGHEKPLSGFSPEQRKKSIFSPKGDGWNVVS 60 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 L KGKK+D LDSIN LFP+GTRLNKV RDIVS+Y+ FDPKDFLN R+SY IVDSFFEG Sbjct: 61 LNKGKKEDVLDSINGLFPVGTRLNKVFRDIVSIYSGFDPKDFLNGVRDSYGVIVDSFFEG 120 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 + IEKL+DS+VYQDF DSL +KS+EK +KSSLVG+DD+KI+NAS+E N +YIT RIV Sbjct: 121 NILKIEKLIDSKVYQDFADSLLIQKSSEKVIKSSLVGLDDLKIVNASVEGNNIYITTRIV 180 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 GQFISASYDK+N LI+ DPEIFGKV+D+WTFVRNI SNPNW+LISTK GE Sbjct: 181 GQFISASYDKNNALIAGDPEIFGKVVDVWTFVRNISSSNPNWILISTKPGE 231 >gi|163867402|ref|YP_001608597.1| hypothetical protein Btr_0112 [Bartonella tribocorum CIP 105476] gi|161017044|emb|CAK00602.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 230 Score = 164 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 124/228 (54%), Gaps = 5/228 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII----T 61 M+ +++ + +F+QLR VLGK+ G EKP +S + E Sbjct: 1 MEFDVI-LVIALVVMVVIFVQLRSVLGKRIGFEKPPFDPYSRRSKKQTEAETTENIVSFP 59 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 K +K + I+E+ P G+ LN+ +R + + F P+ F+ A+ +YE IV +F +G Sbjct: 60 HQKNLQKGDFSEIDEIAPEGSILNENLRALRRIDPHFSPQSFIKGAQIAYEMIVTAFAKG 119 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 ++ L+ V++ F + R+ N++ ++ + VGI+ ++ ++A+I+E +TIRI+ Sbjct: 120 DRSQLKSLLCQDVFESFCAVIEQREKNKERIEFTFVGINKIEFVSAAIQEKDELLTIRII 179 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + IS +Y++ I +P+ ++ DIWTFVRN +PNW L +T+ Sbjct: 180 SEMISVTYNEQGERIDGNPDAIVEIRDIWTFVRNSLSPDPNWKLFATE 227 >gi|296444992|ref|ZP_06886953.1| import inner membrane translocase subunit Tim44 [Methylosinus trichosporium OB3b] gi|296257413|gb|EFH04479.1| import inner membrane translocase subunit Tim44 [Methylosinus trichosporium OB3b] Length = 229 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 104/223 (46%), Gaps = 1/223 (0%) Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 + D IL+ A + FV +L VLG +T E +G T Sbjct: 6 AFDPSILVLAALAAFVVWKLWSVLGVRTDRENSAAGRVPSPGRRFGVVPPPASTGFAAPP 65 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 +D + L G++ + + + FD K+FL A+ +YE +V+SF +G + Sbjct: 66 QD-QSRWDGLAEPGSKGWAGLDALAAADRGFDAKNFLEGAKKAYELVVESFAKGDREMLR 124 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 L+ + VY F +++ R+ ++ ++ +V I+ + +A +E + IR V + ISA Sbjct: 125 NLLANDVYDSFAKAIAAREQRGESAEARVVAIETASVEDAQVERGRAQVAIRFVVKLISA 184 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D +I D E + D+WTF R+I +PNW L++T+ Sbjct: 185 RRDSAGEVIEGDVERPIDITDLWTFARDISSRDPNWKLVATET 227 >gi|114328998|ref|YP_746155.1| transporter [Granulibacter bethesdensis CGDNIH1] gi|114317172|gb|ABI63232.1| transporter [Granulibacter bethesdensis CGDNIH1] Length = 231 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 96/221 (43%), Gaps = 3/221 (1%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 ++L I F+ L+LR VLG++ G E+P G+ + + Sbjct: 14 VDLVLLGMIAVFLVLRLRSVLGRRVGFERPEVPANQGQTGNRIPGLPVRLRRPDAAVAEA 73 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + L + +V+ + V FD FLN A ++ IV ++ +G+ A+ L+ Sbjct: 74 RTYV--LPDASSPTGQVLARMKEVDRSFDAVRFLNNAEQAFRVIVTAYAQGEREALRPLL 131 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 + F ++ R+ + ++ + I D++I NA +E+ +TIR V + + Sbjct: 132 TEATFTIFCQAIDAREQDGARQQTEIQSIRDIRIENARLEQTQAALTIRFVSDQHNVMLN 191 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + + E +++D+WTF R++ +P W L T Sbjct: 192 RTGEPVEG-VEGLTEIVDVWTFERDLASRDPTWRLSGTDNA 231 >gi|121602069|ref|YP_989543.1| Tim44 domain-containing protein [Bartonella bacilliformis KC583] gi|120614246|gb|ABM44847.1| Tim44 domain protein [Bartonella bacilliformis KC583] Length = 230 Score = 162 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 119/228 (52%), Gaps = 5/228 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII----T 61 M D + ++ + VF+QLR VLGK+TG E+P +SG + Sbjct: 1 MGF-DVVFVIALVVMVIVFVQLRNVLGKRTGFERPPFNPYSGHSKKQVEADTTGDITSFP 59 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 +K + I+ + P G+ LN +R I + F P+ F+N + +YE I+ +F +G Sbjct: 60 QQINAQKGDFSDIDAIAPKGSALNDGLRAIRQADSSFSPQFFINGVQVAYEMIMTAFAQG 119 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 +++L+ V++ F ++ R+ + ++ + VGI+ ++ I A +++ +T+RIV Sbjct: 120 NRDQLKELLSQNVFESFCKAIEQREKRNERIQFTFVGINKVEFIAAEMQKREELLTVRIV 179 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + IS Y++ I DPE ++ D+WTFVR+ NPNW L +T+ Sbjct: 180 SEIISVIYNEQEERIDGDPEAIVEIRDVWTFVRDSVSKNPNWKLFATE 227 >gi|21328722|gb|AAM48728.1| conserved hypothetical protein [uncultured marine proteobacterium] Length = 216 Score = 162 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 11/222 (4%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 +L A I ++ L+LRGVLG + G+E P + + D + + G + Sbjct: 2 QIIQLLALAGIAIYLILKLRGVLGTRDGHEGPRANIVARAD-----DRPKLEVIDGGPDQ 56 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 D D + + + + F +FL ++++YE I+ +F G + +++ Sbjct: 57 DITDH----AAEDSDAARALLGMKHAEPSFSVTEFLYGSKSAYEMILMAFENGDLGSVKA 112 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQFIS 186 ++ VY F + RK+ ++++ +G+ D ++ A+ + T I +R + + S Sbjct: 113 FLNQDVYDAFASVVEARKAQGLSIEAEFIGVRDTGLMGATFDPKTNAAEIDVRFICELTS 172 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + D +I + + D+WTF R + +PNW LI+T Sbjct: 173 VLRNSDGDIIEGNETEVKRQRDVWTFGRTMGADDPNWQLIAT 214 >gi|296283090|ref|ZP_06861088.1| hypothetical protein CbatJ_05690 [Citromicrobium bathyomarinum JL354] Length = 220 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 105/222 (47%), Gaps = 3/222 (1%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 + I++ A I F+ L+L VLG++ +E+ + T + Sbjct: 2 IYEIVILAMIAVFLGLRLYSVLGRRAEHEEEPVPHRFDAKDKAGLAAAPQTTQAPPRAVT 61 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 ++ ++ P+ + + ++ I++ FD FL A+ +Y I++++++G + L Sbjct: 62 EQEAKPDVLPV---VERGVQSIIAADRGFDITSFLEGAKGAYGMILEAYWKGDKETLRDL 118 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 D VYQ F ++ R+ + + + L+ I+D I +A +E IT+R V + ++ Sbjct: 119 CDESVYQGFAQAIDAREEAGETLDNRLIRIEDATIRDAELERKEARITVRFVADIAAVTH 178 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 D+D +++ + + DIWTF R + P+W L+ T G Sbjct: 179 DRDGNMVAGSLDDAIESRDIWTFARRVDSRTPDWQLVETDEG 220 >gi|13473820|ref|NP_105388.1| hypothetical protein mlr4544 [Mesorhizobium loti MAFF303099] gi|14024571|dbj|BAB51174.1| mlr4544 [Mesorhizobium loti MAFF303099] Length = 211 Score = 161 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 63/211 (29%), Positives = 111/211 (52%), Gaps = 8/211 (3%) Query: 30 VLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT--------LGKGKKKDNLDSINELFPIG 81 +LG++TG+E+P +S ++ G+ D +I+ Sbjct: 1 MLGRRTGSERPPFDPYSAARTDKDATQKPENVVSLPRKRLPGEPAPADAYTAIDAFAKPD 60 Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 T LNK +R I FDPK F++ A+ +YE IV ++ +G ++ L+ V+ F + Sbjct: 61 TDLNKGLRAIKDNDPSFDPKGFVDGAKMAYEMIVMAYADGDRKTLKNLLSREVFDGFVAA 120 Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201 + R++ + ++SS VGID I++A ++ ++T+RI+ + ISA+ DK +I DPE Sbjct: 121 IGEREAKSEKIQSSFVGIDKADIVSAEMKGGEAHVTLRIISELISATRDKAGTVIDGDPE 180 Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +V D+WTF R+ +PNW LI+T+ + Sbjct: 181 TVAEVKDVWTFARDTRSRDPNWKLIATEEED 211 >gi|294085200|ref|YP_003551960.1| hypothetical protein SAR116_1633 [Candidatus Puniceispirillum marinum IMCC1322] gi|292664775|gb|ADE39876.1| hypothetical protein SAR116_1633 [Candidatus Puniceispirillum marinum IMCC1322] Length = 212 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 101/224 (45%), Gaps = 16/224 (7%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 I++FA I + L+L+ VLG++TG E+P + + Sbjct: 2 PYIDIIIFAVIAVLLVLRLKSVLGQRTGFEQP----------------QDKKPMQAANDG 45 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 D + + G + + +F FL A ++E ++ ++ EG + +++ Sbjct: 46 DVVPFPSNKDETGALNGHGIATLRKADRNFTEAAFLGGATQAFEMVLRAYAEGDLAQLKR 105 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L+ + Q F S+ R +N++++ L I + I+N ++ ++ +T+ + Sbjct: 106 LLGYDLLQSFTQSIQKRNANKESLTIDLENIKEASILNIAVVDSVAAVTVHFHSVQTRIA 165 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D D +I D +++DIWTF R++ ++PNW L+ T+ + Sbjct: 166 RDADENIIDEDESQSQEIVDIWTFERDLTLNDPNWKLVETETAD 209 >gi|190889648|ref|YP_001976190.1| translocase transmembrane protein [Rhizobium etli CIAT 652] gi|190694927|gb|ACE89012.1| putative translocase transmembrane protein [Rhizobium etli CIAT 652] Length = 233 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 74/214 (34%), Positives = 112/214 (52%), Gaps = 6/214 (2%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG------I 59 M S DF+ L F +F QLR VLG++TGNEKP + + Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYQPRDAAPAEAADAGKVVTLP 60 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + +D +I+ + GT LN+ +R + F PK+FLN AR +YE IV ++ Sbjct: 61 RRDATAEDEDRFSAIDAVAAPGTPLNESLRALNKADASFTPKEFLNGARMAYEMIVMAYA 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 +G ++ L+ VY F+ ++ R++ + VKS+ VGID +I +A + IT+R Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGTEAQITVR 180 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213 IV Q ISA+YDK ++LI D E +V D+WTF Sbjct: 181 IVSQLISATYDKADVLIEGDAENVAEVNDLWTFA 214 >gi|114769764|ref|ZP_01447374.1| transporter, Tim44 family protein [alpha proteobacterium HTCC2255] gi|114549469|gb|EAU52351.1| transporter, Tim44 family protein [alpha proteobacterium HTCC2255] Length = 218 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 11/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M F +++ I FV L+LR VLG ++G E + + + +E Sbjct: 1 MSDPMFQLVILGVIALFVILRLRSVLGTRSGFEPTNVPKPTFQKEKTPTEEN-------- 52 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 I + + + K + + ++F +F+ A +YE I+ +F EG Sbjct: 53 -DNKIDRDIADYVSVDSPSGKALSQMKKAESNFLVTEFIQGAGQAYEMILIAFEEGDRDG 111 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN--TVYITIRIVGQ 183 + + VY F ++ R+ + N+ ++ +G+ ++K+ +A + IT+ +V + Sbjct: 112 LRPFLADDVYDSFESVITEREKAQLNIDATFIGLREIKLTSAEYDWRAKEGEITLSLVAE 171 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + + ++ +I D K D WTF R + NPNW L++T Sbjct: 172 LTTVVKNINDEIIEGDKNKIKKQKDTWTFSRIMGNDNPNWTLVAT 216 >gi|103487499|ref|YP_617060.1| import inner membrane translocase, subunit Tim44 [Sphingopyxis alaskensis RB2256] gi|98977576|gb|ABF53727.1| import inner membrane translocase, subunit Tim44 [Sphingopyxis alaskensis RB2256] Length = 221 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 7/223 (3%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 F I+L A I F+ ++L VLGK+TG+E+ R I L G+ Sbjct: 4 FSIVLLAMIAAFLGMRLYSVLGKRTGHEQEPVLPRRDD-----RSAPAPIRLDDGETSAI 58 Query: 71 LDSINELFPI--GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 + S + + +R +++ +FD F+ AR +Y I+++F++G + Sbjct: 59 VTSATDTAGLVYEPSAEAGLRQLLANDRNFDAGRFMEGARAAYRMILEAFWKGDRETLRD 118 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L D Y F +++ R++ + +++ L+ ID KI A + IT+R + + Sbjct: 119 LCDDDSYDAFVEAIDAREARGETLENRLIRIDSAKITAAELNRGEARITVRYHADISAIT 178 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 D D LI+ + D+WTF R I ++PNW+L + Sbjct: 179 RDADGKLIAGSMSDAAQTDDLWTFRRQIGSNDPNWLLDEAESA 221 >gi|161170260|gb|ABX59230.1| uncharacterized protein conserved in bacteria [uncultured marine bacterium EB000_55B11] gi|297183789|gb|ADI19912.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 218 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 11/225 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M F +++ I FV L+LR VLG ++G E + + + +E Sbjct: 1 MSDPMFQLVILGVIALFVILRLRSVLGTRSGFEPTNVPKPTFQKEKTPTEEN-------- 52 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 I + + + K + + ++F +F+ A +YE I+ +F EG Sbjct: 53 -DNKIDRDIADYVSVDSSSGKALSQMKKAESNFLVTEFIQGAGQAYEMILIAFEEGDRDG 111 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN--TVYITIRIVGQ 183 + + VY F ++ R+ + N+ ++ +G+ ++K+ +A + IT+ +V + Sbjct: 112 LRPFLADDVYDSFESVITEREKAQLNIDATFIGLREIKLTSAEYDWRAKEGEITLSLVAE 171 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + + ++ +I D K D WTF R + NPNW L++T Sbjct: 172 LTTVVKNINDEIIEGDKNKIKKQKDTWTFSRIMGNDNPNWTLVAT 216 >gi|85374926|ref|YP_458988.1| hypothetical protein ELI_10495 [Erythrobacter litoralis HTCC2594] gi|84788009|gb|ABC64191.1| hypothetical protein ELI_10495 [Erythrobacter litoralis HTCC2594] Length = 215 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 106/222 (47%), Gaps = 8/222 (3%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F I++ A I F+ ++L VLG++ E+ + + ++ D K Sbjct: 2 IFEIVILAMIAAFLGMRLYSVLGQRAEQEE--------EVIPNRYDAGDQPQQAAPKPAT 53 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + + + + + +R I + FD FL A+ +Y +++++++G + +L Sbjct: 54 QVVELQPNPNLHPSVEQGVRAIAAADRGFDVSSFLEGAKGAYGMVLEAYWKGDKETLREL 113 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 D VY F ++ R+ + + ++L+ I+D I +A ++ T +T+R V + + Sbjct: 114 CDDDVYASFAGAIDAREEAGEALDNTLIRIEDAVIRDAEMDGRTARVTVRFVADIAAVTR 173 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 DKD +I+ + + DIWTF RN+ + P+WVL T G Sbjct: 174 DKDGNVIAGSLDDAIESRDIWTFSRNVDAAGPDWVLDETDEG 215 >gi|84514927|ref|ZP_01002290.1| hypothetical protein SKA53_11923 [Loktanella vestfoldensis SKA53] gi|84511086|gb|EAQ07540.1| hypothetical protein SKA53_11923 [Loktanella vestfoldensis SKA53] Length = 211 Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 10/217 (4%) Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73 ++ A I F+ L+LRGVLG + G EKP + + R + + G D D Sbjct: 1 MVLAGIAVFLILRLRGVLGTREGFEKPAVT----RQETTPRRKHDFDVIEGGPDLDITDH 56 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 + L + V DF+ +FL AR +YE I+ +F + +I + Sbjct: 57 VQADSAAAKALA----AMKRVDPDFNVTEFLGGARGAYEMILMAFENSDLDSIVPFISHD 112 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQFISASYDK 191 VY+ F + R+ V +S +GI DM + +A +E T +++R + S + Sbjct: 113 VYEAFASVVDDRQRQGLTVTASFIGISDMTLAHAEFDEATKEGEVSVRFKSEMTSVVRNA 172 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + ++ + +++D WTF R + +PNW L++T Sbjct: 173 EGEVVEGSTKEIKRLVDTWTFARKMDAGDPNWKLVAT 209 >gi|87198608|ref|YP_495865.1| import inner membrane translocase, subunit Tim44 [Novosphingobium aromaticivorans DSM 12444] gi|87134289|gb|ABD25031.1| import inner membrane translocase, subunit Tim44 [Novosphingobium aromaticivorans DSM 12444] Length = 247 Score = 157 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 103/229 (44%), Gaps = 7/229 (3%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKK-TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 I++ A I F+ L+L VLG++ +E+P +K + G + + + Sbjct: 19 IVQIVILAMIAAFLGLRLYSVLGRRPERDEEPMRRRIEQPDPSAKPHQPGSMGNARSAET 78 Query: 69 DNLDSINELFPI------GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 L +R I++ FD FL A+ +Y I+++F+ G Sbjct: 79 GALAPRPRELAAPEAQTFDNSAEAGVRAIIAADRRFDVAQFLAGAKGAYGMILEAFWRGD 138 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + +L D+ VY+ F ++ R + + + + L+ I++ +II ASIE T I +R + Sbjct: 139 KEELAQLCDADVYEGFASAIDARANAGETIDARLIRIEEARIIGASIEGTTARIAVRFLA 198 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 S + + + +++ + D+WTF R++ +P+W+L T Sbjct: 199 DIASVTRNAEGHVVAGSLDDAIDARDLWTFRRDLTSRDPDWLLDETDEA 247 >gi|148556731|ref|YP_001264313.1| import inner membrane translocase subunit Tim44 [Sphingomonas wittichii RW1] gi|148501921|gb|ABQ70175.1| import inner membrane translocase, subunit Tim44 [Sphingomonas wittichii RW1] Length = 226 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 96/228 (42%), Gaps = 7/228 (3%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 ++ I++ A + FV +L VLG++TG+E+ + Sbjct: 5 QRIGGPVTTIVILAMVFLFVAFRLWSVLGRRTGHEQTIARPAEAAPAPIGAGRSLPENAT 64 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 + + R +R I S FD FL AR++Y I+++++ G Sbjct: 65 PVLPA-------KPAVVEPRAEAGVRAIQSADGGFDAAQFLEGARSAYRMILEAYWRGDE 117 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 A+ +L D VY+ F +++ R+ + + + LV I+ I A + T +T+R Sbjct: 118 EALRRLTDDDVYEAFAAAITERREANEVLDNRLVSIESAVIEQARMNGQTANVTVRFDAD 177 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + + D + +++ D+WTF R++ +PNW L+ T Sbjct: 178 IAAVTRDGEGNVVAGSLTDAVPTHDVWTFSRHVRSDDPNWTLVETDEA 225 >gi|323135818|ref|ZP_08070901.1| import inner membrane translocase subunit Tim44 [Methylocystis sp. ATCC 49242] gi|322398909|gb|EFY01428.1| import inner membrane translocase subunit Tim44 [Methylocystis sp. ATCC 49242] Length = 233 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 6/224 (2%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG----KGKKK 68 +++FA + FV +LR VLG + + P F + ++ Sbjct: 12 LVVFAALAVFVIWKLRSVLGVRVDRDAPPPAQFQPRRPSPAGATPLPGAAPLDDGAAARR 71 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 + S + G + I + FD + FL+ AR +Y+ IV +F G + Sbjct: 72 NVPASWEGVAEKGGAAASGLDAIAAADPRFDGQAFLDGARRAYDMIVSAFARGDRDQLRP 131 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L+ V+ F ++ R+ N + ++++++ ID + +A IT+R + ++ Sbjct: 132 LLSKEVFDGFAAEIARREENGETMETAVIAIDSALVESARAAPRLNEITVRFATRLMNLR 191 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +K+ I V+++WTF R+ S+PNW L++T+ E Sbjct: 192 RNKEGETIEG--GHTIPVVELWTFARDPRASDPNWKLVATRPAE 233 >gi|89052682|ref|YP_508133.1| import inner membrane translocase, subunit Tim44 [Jannaschia sp. CCS1] gi|88862231|gb|ABD53108.1| import inner membrane translocase subunit Tim44 [Jannaschia sp. CCS1] Length = 235 Score = 155 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 54/215 (25%), Positives = 94/215 (43%), Gaps = 10/215 (4%) Query: 17 AFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINE 76 A I F+ L+LR VLG + G EKP S + R + G D I + Sbjct: 28 AGIAIFLILRLRSVLGTRDGFEKPPVAPGSSRRDV----RRDFEVIEGGP----DDDILD 79 Query: 77 LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136 G+ K + + F +FL AR +YE I+ +F G V + + V + Sbjct: 80 HVDDGSDSAKALAAMKMAEPGFRVGEFLGGARQAYEMILMAFERGDVDGLRPFLADDVLE 139 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN--TVYITIRIVGQFISASYDKDNL 194 F + R ++++ VG+ ++ + A+ + + +T+R +G+ S + D Sbjct: 140 TFETVIDQRNEQGLSIEAEFVGVREITLQEATFDRSAGVGEVTVRFIGELTSVVRNADGE 199 Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 +I D + D+WTF R + +PNW L++T Sbjct: 200 IIEGDATEIKRQRDVWTFARKMGADDPNWALVATD 234 >gi|304320483|ref|YP_003854126.1| hypothetical protein PB2503_04547 [Parvularcula bermudensis HTCC2503] gi|303299385|gb|ADM08984.1| hypothetical protein PB2503_04547 [Parvularcula bermudensis HTCC2503] Length = 222 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 104/222 (46%), Gaps = 7/222 (3%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 D +++ F I F+ +L +LG K G+E + + + G+ Sbjct: 2 NDPVLIFFVVIAAFLSYRLYTLLGSKGGHEPTDAERERIGLPTGRPERD-------GQGT 54 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 +++ L + + Y DFDP +F+ A+ +YE I+++F G++ + Sbjct: 55 QEDEAVVAPRSDAKPLPAWAETVRADYADFDPDEFVTGAKAAYEMIIEAFANGRLDDVRA 114 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 VD V + F ++ R + ++ ++ +LVGI+ +++ A + + +T++ I + Sbjct: 115 YVDPDVMRTFEIAVRGRDNAQQTMEVTLVGIERAEVVEAKRQSAHLDVTVKFRSDQIRVT 174 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + + +I DP VID WTF R + ++PNW L +T+ Sbjct: 175 RNAEGDVIEGDPNRIDLVIDRWTFSRPLSSTDPNWTLTATEA 216 >gi|83944953|ref|ZP_00957319.1| hypothetical protein OA2633_09999 [Oceanicaulis alexandrii HTCC2633] gi|83851735|gb|EAP89590.1| hypothetical protein OA2633_09999 [Oceanicaulis alexandrii HTCC2633] Length = 219 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 5/222 (2%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 IL FA + F+ ++L VLGK +G + +R E + + Sbjct: 3 ILQILFFAGLAVFLGVRLYMVLGKSSG-----RAAEDVEREQRERAEAAGMGAPPPSMRP 57 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 D + + I FDP +F AR +YE IV ++ +G A+E L Sbjct: 58 QADETPFAAQFAGPAGEGLMQIAQHDPAFDPDEFRKGARAAYEMIVLAYAKGDREALEPL 117 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + RV + ++ +++ R+ V + + I +I AS+ +N + I + S + Sbjct: 118 LTERVKKAYDQAIAAREEKNWTVTTEIDRIKSAEISEASLNDNRAKVKIAFSVELASETR 177 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + ++ D V +IW+F R++ NPNW L K Sbjct: 178 NAQGDVVEGDLTTLKTVDEIWSFERDVTSENPNWRLSGVKPA 219 >gi|326386373|ref|ZP_08207996.1| import inner membrane translocase, subunit Tim44 [Novosphingobium nitrogenifigens DSM 19370] gi|326209034|gb|EGD59828.1| import inner membrane translocase, subunit Tim44 [Novosphingobium nitrogenifigens DSM 19370] Length = 218 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 48/218 (22%), Positives = 92/218 (42%), Gaps = 2/218 (0%) Query: 16 FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 A I F+ L+L VLG++ + L + S+ Sbjct: 1 MAMIALFLGLRLYAVLGRRAEGSDEPLRRRVEQPDPQAALRAMPSKLPEKPAMTGRPSLP 60 Query: 76 ELFPIGTRLNK--VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 P +R I++ FD FL A+ +Y ++D+F+ G A+ +L + Sbjct: 61 TAEPSAFDAGAETGIRAIIAADRRFDVALFLTGAKAAYGMVLDAFWRGDKDALAQLCERS 120 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 VY+ F ++ RK + V + L+ +DD +I++A I +R V + + + + Sbjct: 121 VYESFAAAIDARKQAGETVDARLIRVDDARIVSADFNAPVARIAVRFVADVATVTRNTEG 180 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 +++ + + D+WTF R++ +P+W L T G Sbjct: 181 TVVAGSLDDAIESRDLWTFSRDLTSRDPDWQLDETDQG 218 >gi|149185516|ref|ZP_01863832.1| hypothetical protein ED21_20864 [Erythrobacter sp. SD-21] gi|148830736|gb|EDL49171.1| hypothetical protein ED21_20864 [Erythrobacter sp. SD-21] Length = 218 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 105/222 (47%), Gaps = 5/222 (2%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 + I++ A I F+ L+L VLG+++ +E+ + ++ F D Sbjct: 2 IYEIVILAAIAAFLGLRLYSVLGERSEHEEEPA-----RHRFDAPDAVPPAAERPAAPAR 56 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + + + +R I S FD FL A+ +Y I+++F++G + L Sbjct: 57 ESVRLRSVDNASSANENAIRAIASADPRFDLLAFLEGAKAAYGMILEAFWKGDKDTLRDL 116 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 D VY F+ ++ R + +++++ LV I+D I +A ++ T I++ V S + Sbjct: 117 TDDDVYAGFSGAIDARDTAGESLENRLVRIEDATIHSAELDNRTARISVLFVSDIASLTR 176 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 DKD +I+ + + DIWTF RN+ +PNWVL T G Sbjct: 177 DKDGNVIAGSLDDAVESRDIWTFTRNVDAMDPNWVLDETDQG 218 >gi|319406501|emb|CBI80142.1| Tim44 domain protein [Bartonella sp. 1-1C] Length = 230 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 67/210 (31%), Positives = 118/210 (56%), Gaps = 4/210 (1%) Query: 24 FLQLRGVLGKKTGNEKPFSGFFSGKYVFS----KRDERGIITLGKGKKKDNLDSINELFP 79 F+QLR VLGK+ G EKP +SG K D+ + +K + I+ + P Sbjct: 18 FVQLRNVLGKRVGFEKPPFDSYSGYTKKPIEVEKNDKIVSLPDQSSSQKGDFSEIDAIAP 77 Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 G++LN +R I F P+ F+N + YE I+ +F +G + +++ + S V++ F Sbjct: 78 EGSKLNSGLRSIRQFDPSFSPQFFVNGVQIVYEIIMTAFAQGDRNRLKEHLSSDVFESFC 137 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199 +++ R+ N + ++ + VGI ++ I A +++ +T+RI+ + ISA+Y++ I + Sbjct: 138 EAIELREKNNERIQFTFVGISKIEFIAAEMQKEEALLTVRIISEMISATYNEQEECIEGN 197 Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 PE ++ DIWTF+RNI NPNW L +T+ Sbjct: 198 PEAIIEIRDIWTFIRNITSKNPNWKLFATE 227 >gi|262277816|ref|ZP_06055609.1| import inner membrane translocase subunit Tim44 [alpha proteobacterium HIMB114] gi|262224919|gb|EEY75378.1| import inner membrane translocase subunit Tim44 [alpha proteobacterium HIMB114] Length = 204 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 96/229 (41%), Gaps = 29/229 (12%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 + + G I+L A + F+ L+LR LGK N P F+ + + I Sbjct: 1 MSENFGYIDIILLAIMAGFILLRLRSTLGKGADNM-PMKARFTQAQSNEEFTKPIIE--- 56 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 +I T FD K F+ A +YE I+++F +G Sbjct: 57 -------------------------DEIKQDTTKFDEKIFIKGAEAAYEIIINAFAKGDR 91 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 A++ L+ +Y++F + R+S + + + S +GI + KI++ ++ + + V + Sbjct: 92 KALKPLLTKDLYKNFEGVIKERESKKISSQMSFIGIKETKILDIDNKDTFYKVKTKFVSE 151 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ++ +I +PE V D+W F +++ ++P W L E Sbjct: 152 IVNCLKSDKGEVIEGNPEEIKLVTDVWVFEKDLKNNDPTWYLTELSSEE 200 >gi|300024770|ref|YP_003757381.1| import inner membrane translocase subunit Tim44 [Hyphomicrobium denitrificans ATCC 51888] gi|299526591|gb|ADJ25060.1| import inner membrane translocase subunit Tim44 [Hyphomicrobium denitrificans ATCC 51888] Length = 251 Score = 148 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 59/250 (23%), Positives = 105/250 (42%), Gaps = 24/250 (9%) Query: 6 MDSGDFLILLFAFI-TFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK 64 M LI L A I ++LR VLG +T ++ + + + Sbjct: 1 MSGQFDLITLIALIVAVAAIIKLRSVLGHRTDEDEQRVERLRAREREASQRAGADAPSAD 60 Query: 65 GKKKDNLDS-------------------INELFPIGTRLNKVMRDIVSVYTDFDPKDFLN 105 D IN + + + + +FDP+ F+ Sbjct: 61 VITMPRRDRDAAPAAPAAEAAGPSAETRINAYPVSNPDVTAGLLQVAKLDPEFDPESFVT 120 Query: 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165 A +YE IV +F EG ++ L+ V+ F+ +++ R++ + + VGI I+ Sbjct: 121 GAGRAYEMIVSAFAEGNRRMLKDLLSKDVFDGFSSAIADREARGEVLDQQFVGIKKADIV 180 Query: 166 NASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP----SNP 221 +A ++ T +T+R + + ISA+ DK +I+ D + V DIW F R++ SNP Sbjct: 181 DAEVKNGTAALTVRFISELISATRDKAGEVIAGDAQKIKDVTDIWIFSRDVSSAKALSNP 240 Query: 222 NWVLISTKLG 231 NW L++T+ Sbjct: 241 NWRLVATQAP 250 >gi|310817171|ref|YP_003965135.1| transporter, Tim44 family protein [Ketogulonicigenium vulgare Y25] gi|308755906|gb|ADO43835.1| transporter, Tim44 family protein [Ketogulonicigenium vulgare Y25] Length = 219 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 97/205 (47%), Gaps = 10/205 (4%) Query: 26 QLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLN 85 +LR VLG + G EKP + R + + G +D +D + P G+ Sbjct: 21 RLRSVLGSRDGFEKPIAQV----PPEEARKRPTLDVIEGGPDRDIVDHV----PEGSATA 72 Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145 ++ + F +FL+ +R +YE I+ +F G + + + V+ F ++ R Sbjct: 73 LIIGQMKKAEPSFSLSEFLSGSRGAYEMILMAFERGDIEPVRGFIAPEVFDAFAGVIADR 132 Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQFISASYDKDNLLISSDPEIF 203 ++ V++ +GI D+ + +A+ + T + +R V + S D D ++ P++ Sbjct: 133 QARGLKVEAHFIGIRDVGLDDAAFDPATGEAELVVRFVAEMTSVVRDADGTVVEGAPDVA 192 Query: 204 GKVIDIWTFVRNIPPSNPNWVLIST 228 + D+WTF R + S+PNW L++T Sbjct: 193 KRQKDVWTFARKMGASDPNWTLVAT 217 >gi|319403587|emb|CBI77169.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 230 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 67/208 (32%), Positives = 116/208 (55%), Gaps = 4/208 (1%) Query: 26 QLRGVLGKKTGNEKPFSGFFSGKYVFS----KRDERGIITLGKGKKKDNLDSINELFPIG 81 QLR VLGK+ G EKP +SG K D+ + +K + I+ + G Sbjct: 20 QLRNVLGKRIGFEKPPFDSYSGYTKKPVEVEKNDKIVSLPDQSSSQKSDFSEIDAIASEG 79 Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 ++LN +R I F P+ F+N + YE I+ +F +G + +++ + S V++ F ++ Sbjct: 80 SKLNSGLRSIRQFDPSFSPQFFVNGVQIVYEIIMTAFAQGDRNQLKEHLSSDVFESFCEA 139 Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201 + R+ N + ++ + VGI ++ I A +++ ++T+RIV + ISA+Y++ I +PE Sbjct: 140 IELREKNNERIQFTFVGISKIEFIAAEMQKEEAFLTVRIVSEIISATYNEQEECIEGNPE 199 Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTK 229 ++ DIWTFVRNI NPNW L +T+ Sbjct: 200 AIIEIRDIWTFVRNITSKNPNWKLFATE 227 >gi|46204686|ref|ZP_00049618.2| COG4395: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 223 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 10/221 (4%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 DS D L+F + FV +LR VLG+KTG E+ + + Sbjct: 3 DSFDVTTLIFLALAVFVIWRLRSVLGQKTGAERSPFRPVERNRTEPPAGRAEGDNVVRLP 62 Query: 67 KKD----------NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116 D + G+ + + + +V V FDP+ FL A+ +YE IV Sbjct: 63 GADRAQAAAAVQTVTRDWRGIAEPGSAVARGLEQVVQVEPGFDPRTFLEGAKGAYEIIVT 122 Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F +G + L+ VY F+ +S R+ + V+++ + ID +I+ ++ I Sbjct: 123 AFAQGDRKTLRPLLSREVYDGFDRVISERERRRETVETTFISIDKAEIVAIEVKNRAAQI 182 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217 T+R + I+A+ D D +I + E +V D+WTF R + Sbjct: 183 TVRFLSNLITATRDADGKVIDGNAETGVEVPDVWTFARTLG 223 >gi|254994672|ref|ZP_05276862.1| hypothetical protein AmarM_00445 [Anaplasma marginale str. Mississippi] Length = 217 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 4/221 (1%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 + ++AF+ F+F +L G LGK + S + + + G I Sbjct: 1 MVELAIYAFVAAFIFFRLYGSLGKASSVNFQPSAIYPEQAGGEQAASDGSINSQDIP--- 57 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + S+ ++ V I F K F+ + ++EAIV + +G + L Sbjct: 58 -VSSVVADCASVEQIASVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGNAEFLSSL 116 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + ++ F + RKS + +V I K+ +A ++ N+ IT++ V + I+ Sbjct: 117 LSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVTEQINVVR 176 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D ++ + D W F R+I S W L ST Sbjct: 177 DAGGQVVDGSTSKVNTIEDTWKFERDITTSGRRWYLTSTSA 217 >gi|56416441|ref|YP_153515.1| hypothetical protein AM113 [Anaplasma marginale str. St. Maries] gi|56387673|gb|AAV86260.1| hypothetical protein AM113 [Anaplasma marginale str. St. Maries] Length = 217 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 4/221 (1%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 + ++AF+ F+F +L G LGK + S + + + G I Sbjct: 1 MVELAIYAFVAAFIFFRLYGSLGKASSVNFQPSAIYPEQAGGEQAASDGSINSQDIP--- 57 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + S+ +++ V I F K F+ + ++EAIV + +G + L Sbjct: 58 -VSSVVADCASVEQISSVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGNAEFLSSL 116 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + ++ F + RKS + +V I K+ +A ++ N+ IT++ V + I+ Sbjct: 117 LSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVTEQINVVR 176 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D ++ + D W F R+I S W L ST Sbjct: 177 DAGGQVVDGSTSKVNTIEDTWKFERDITTSGRRWYLTSTSA 217 >gi|222474811|ref|YP_002563226.1| hypothetical protein AMF_080 [Anaplasma marginale str. Florida] gi|255002781|ref|ZP_05277745.1| hypothetical protein AmarPR_00408 [Anaplasma marginale str. Puerto Rico] gi|222418947|gb|ACM48970.1| Conserved hypothetical protein [Anaplasma marginale str. Florida] Length = 219 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 4/222 (1%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 G + ++AF+ F+F +L G LGK + S + + + G I Sbjct: 2 GMVELAIYAFVAAFIFFRLYGSLGKASSVNFQPSAIYPEQAGGEQAASDGSINSQDIP-- 59 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 + S+ +++ V I F K F+ + ++EAIV + +G + Sbjct: 60 --VSSVVADCASVEQISSVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGNAEFLSS 117 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L+ ++ F + RKS + +V I K+ +A ++ N+ IT++ V + I+ Sbjct: 118 LLSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVTEQINVV 177 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D ++ + D W F R+I S W L ST Sbjct: 178 RDAGGQVVDGSTSKVNTIEDTWKFARDITTSGRRWYLTSTSA 219 >gi|269959143|ref|YP_003328932.1| Tim44-like domain containing protein [Anaplasma centrale str. Israel] gi|269848974|gb|ACZ49618.1| Tim44-like domain containing protein [Anaplasma centrale str. Israel] Length = 217 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 94/221 (42%), Gaps = 4/221 (1%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 + ++AF+ F+F +L G LGK + S + G+ + G + Sbjct: 1 MVELAIYAFVAAFIFFRLYGSLGKASSVNFQPSAIYPGQVSGEQAASDGSVKPQDIP--- 57 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 +DS+ +++ V I + DF K F+ + ++EAIV + +G + L Sbjct: 58 -VDSVVADSAPVDQISSVFEAIKARNKDFSVKHFIEGSAAAFEAIVSALNQGNTELLSSL 116 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 ++ +Y F + R+ + + +V I K+ NA +E N IT++ V + I+ Sbjct: 117 LNRHMYNSFVKEVERRRDAGRVHEDVVVSITSQKVTNAELEGNFATITVQFVTEQINVVR 176 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D + ++ + D W F R++ + W L ST Sbjct: 177 DVEGQVVDGSTSKVNVIEDTWKFERDVTAAGRRWYLASTSA 217 >gi|255003915|ref|ZP_05278716.1| hypothetical protein AmarV_00428 [Anaplasma marginale str. Virginia] Length = 217 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 4/221 (1%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 + ++AF+ F+F +L G LGK + S + + + G I Sbjct: 1 MVELAIYAFVAAFIFFRLYGSLGKASSVNFQPSAIYPEQAGGEQAASDGSINSQDIP--- 57 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + S+ +++ V I F K F+ + ++EAIV + +G + L Sbjct: 58 -VSSVVADCASVEQISSVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGNAEFLSSL 116 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + ++ F + RKS + +V I K+ +A ++ N+ IT++ V + I+ Sbjct: 117 LSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVTEQINVVR 176 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D ++ + D W F R+I S W L ST Sbjct: 177 DAGGQVVDGSTSKVNTIEDTWKFARDITTSGRRWYLTSTSA 217 >gi|319405014|emb|CBI78623.1| Tim44 domain protein [Bartonella sp. AR 15-3] Length = 230 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 111/206 (53%), Gaps = 4/206 (1%) Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFS----KRDERGIITLGKGKKKDNLDSINELFPIGTR 83 R VLGK+ G EKP +S D + KK+N IN + P + Sbjct: 22 RNVLGKRIGFEKPPFDSYSKHSKKQIERETSDNIVSLPDQSSSKKNNFSEINTIAPEKSA 81 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 LN +R I + F P+ F+N + YE I+ +F +G +++ + S V++ F +++ Sbjct: 82 LNSGLRAISLADSSFSPQFFINGVQIVYEIIMTAFAQGNRDQLKEHLSSDVFESFCEAIE 141 Query: 144 TRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203 R+ N + ++ + VGI+ ++ I A +++ ++T+RIV + ISA+Y++ I DPE Sbjct: 142 QREKNNERIQFTFVGINKIEFIAAEMQKEEAFLTVRIVSEIISATYNEREEYIDGDPEAI 201 Query: 204 GKVIDIWTFVRNIPPSNPNWVLISTK 229 ++ DIWTFVRN NPNW L +T+ Sbjct: 202 IEIRDIWTFVRNTTSKNPNWKLFATE 227 >gi|319898295|ref|YP_004158388.1| hypothetical protein BARCL_0116 [Bartonella clarridgeiae 73] gi|319402259|emb|CBI75797.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 230 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 110/206 (53%), Gaps = 4/206 (1%) Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFS----KRDERGIITLGKGKKKDNLDSINELFPIGTR 83 R VLGK+ G EKP +SG D + +K + I+ + P G+ Sbjct: 22 RNVLGKRIGFEKPPFDSYSGYPKKQIEVETTDNIVSLPDQSSSQKSDFSEIDAIAPEGSE 81 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 LN +R I F P+ F+N + YE I+ +F +G +++ + S V++ F ++ Sbjct: 82 LNVSLRTIRQFDPSFSPRFFMNGVQIVYEMIMTAFAQGDRVKLKEHLSSDVFESFCAAIE 141 Query: 144 TRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203 R+ N + ++ + VGI+ ++ I A +++ ++T+RIV + ISA+Y++ I +PE Sbjct: 142 QREKNNERIQFTFVGINRIEFIAAEMQKKEAFLTVRIVSEMISATYNEQEECIDGNPEAI 201 Query: 204 GKVIDIWTFVRNIPPSNPNWVLISTK 229 ++ DIWTFVRN +PNW L +T+ Sbjct: 202 IEIRDIWTFVRNTTSQSPNWKLFATE 227 >gi|258541896|ref|YP_003187329.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-01] gi|256632974|dbj|BAH98949.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-01] gi|256636031|dbj|BAI02000.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-03] gi|256639086|dbj|BAI05048.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-07] gi|256642140|dbj|BAI08095.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-22] gi|256645195|dbj|BAI11143.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-26] gi|256648250|dbj|BAI14191.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-32] gi|256651303|dbj|BAI17237.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654294|dbj|BAI20221.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-12] Length = 242 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 100/235 (42%), Gaps = 16/235 (6%) Query: 5 KMDSGD----FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60 +MD ++L A + F+ L+LR VLGK+ G + + R + Sbjct: 16 QMDFSLGHFPVDLVLLALVAAFLVLRLRSVLGKRVGIQ-------PVQVKLQVRPDAAPR 68 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 + ++ + ++ GTR+ ++ DI F P+ FLN A+ ++ +V ++ + Sbjct: 69 VVEGKPEQAETAAEFDIPAPGTRVGTLLADIRQKDPSFTPQQFLNGAQIAFAQVVGAYAQ 128 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT----VYI 176 G V ++ + V F ++ R + E+ ++ + I + I + I I Sbjct: 129 GNVDVLKTYLTPAVLAAFEAGITARANAEETQRTDVKAIRSLAIEDVRISPMEAGTAAAI 188 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 +RIV IS +K+ ++ + + D+WTF R + + W L + + Sbjct: 189 DVRIVSDQISLVLNKEGQPVTG-TDAVTEFSDLWTFERLLDVNGSTWRLAAARSA 242 >gi|329114333|ref|ZP_08243095.1| Import Inner Membrane Translocase Subunit [Acetobacter pomorum DM001] gi|326696409|gb|EGE48088.1| Import Inner Membrane Translocase Subunit [Acetobacter pomorum DM001] Length = 242 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 102/235 (43%), Gaps = 16/235 (6%) Query: 5 KMDSGD----FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60 +MD ++L A + F+ L+LR VLGK+ G + + R + Sbjct: 16 QMDFSLGHFPVDLVLLALVAAFLVLRLRSVLGKRVGIQ-------PVQVQLQVRPDAAPR 68 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 + ++ + ++ GTR+ ++ DI F P+ FLN A+ ++ +V ++ + Sbjct: 69 VVEGKPEQAEAAAEFDIPAPGTRVGTLLADIRQKDPSFTPQQFLNGAQTAFAQVVGAYAQ 128 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT----VYI 176 G ++ ++ + V+ F ++ R + E+ ++ + I + I + + I Sbjct: 129 GNLNVLKTYLTPAVFSAFEAGITARTNAEETQRTDVKAIRSLAIEDVRLTPMEAGTAAAI 188 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 +RIV IS +K+ ++ + + D+WTF R + + W L + + Sbjct: 189 DVRIVSDQISLVLNKEGQPVTG-TDAVTEFSDLWTFERLLDVNGSTWRLAAARSA 242 >gi|88607695|ref|YP_504724.1| Tim44-like domain-containing protein [Anaplasma phagocytophilum HZ] gi|88598758|gb|ABD44228.1| Tim44-like domain protein [Anaplasma phagocytophilum HZ] Length = 241 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 89/221 (40%), Gaps = 7/221 (3%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 G + ++AF+ F+F +L LG+ + S F G ++ I L + Sbjct: 26 GMVELAIYAFVAAFIFFRLYSSLGRAS------SINFQGACATPEKPGDDRIALDAKNDQ 79 Query: 69 DNLDSINELFPIG-TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 ++ + ++ + + + DF ++F+ + ++E I+ + G + Sbjct: 80 QDIPLTSVTEEEHFEEVSPGIEVMRARSMDFSLRNFMAGSAAAFEVIMKALNRGDTELLS 139 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 L+ +Y+ F + R S + +V I KI A + + IT++ + + I+ Sbjct: 140 SLLSDDIYKSFEKEIMRRNSEGHIHEDVVVSIVSQKITAAKVIGDVAAITVKFLTEQINV 199 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + +I+ V D WTF +N + W L +T Sbjct: 200 VRNAAGDVIAGSTSKINVVEDFWTFEKNANSPSRKWYLSAT 240 >gi|73667391|ref|YP_303407.1| membrane translocase, subunit Tim44 [Ehrlichia canis str. Jake] gi|72394532|gb|AAZ68809.1| membrane translocase, subunit Tim44 [Ehrlichia canis str. Jake] Length = 212 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 10/221 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 + ++A + F+F +L LGK +G + + ++ + Sbjct: 1 MVELAIYALLAAFIFFRLYNSLGKTSGLQ----------PNNHSQAISIVVEDTQEYDDA 50 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 ++ + + ++ I +F K F++ + ++E I+ +F EG VH + L Sbjct: 51 EIEIESVMDTCNKDEKSIINQIKKKDKEFSLKHFMDGSIKAFEIIIKAFNEGNVHILSML 110 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 +D+ +Y F++ + RK + +V + KII + N YIT++ + + I+ Sbjct: 111 LDTNLYNSFSEEIENRKKLNHVYEDIIVSVTSHKIIKLDLSGNIAYITVKFITEQINFVK 170 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 DKD+ +I K+ D+WTF ++I SN W L + + Sbjct: 171 DKDDNVIQGSTSKINKIEDVWTFRKDITLSNKKWYLNAIQS 211 >gi|162147851|ref|YP_001602312.1| transporter protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786428|emb|CAP56010.1| putative transporter protein [Gluconacetobacter diazotrophicus PAl 5] Length = 228 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 20/238 (8%) Query: 4 IKMDSGD----FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59 + MD F ++LF + F+ L+LR +LG + G E + Sbjct: 1 MVMDFSFSHFPFDLVLFGLVAAFLALRLRSILGTRVGVEPAPPPSAVPRPGP-------- 52 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + + ++ TR+ +V+ I DF P FL ++ IV +F Sbjct: 53 -VIEGRAEPPATLTDYDVPAPETRVGQVLAAIAQQERDFVPAQFLKGVEAAFRQIVLAFA 111 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN----TVY 175 G V + + + + + F ++ +R+ + + K+ + I + I++A+IEE Sbjct: 112 AGDVAMLRERLTANAFSAFEAAIRSREQSGEIQKAEVRAIASLAIVDAAIEERDGATHAR 171 Query: 176 ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP--SNPNWVLISTKLG 231 I +RIV IS + DKD ++ + + D+WTF R + S W L +++ Sbjct: 172 IDVRIVSDQISLTSDKDGHPVAG-TDAVTEFSDLWTFERPLGVAISGAAWRLAASRSA 228 >gi|209542471|ref|YP_002274700.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter diazotrophicus PAl 5] gi|209530148|gb|ACI50085.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter diazotrophicus PAl 5] Length = 226 Score = 135 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 100/236 (42%), Gaps = 20/236 (8%) Query: 6 MDSGD----FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61 MD F ++LF + F+ L+LR +LG + G E + Sbjct: 1 MDFSFSHFPFDLVLFGLVAAFLALRLRSILGTRVGVEPAPPPSAVPRPGP---------V 51 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 + + + ++ TR+ +V+ I DF P FL ++ IV +F G Sbjct: 52 IEGRAEPPATLTDYDVPAPETRVGQVLAAIAQQERDFVPAQFLKGVEAAFRQIVLAFAAG 111 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN----TVYIT 177 V + + + + + F ++ +R+ + + K+ + I + I++A+IEE I Sbjct: 112 DVAMLRERLTANAFSAFEAAIRSREQSGEIQKAEVRAIASLAIVDAAIEERDGATHARID 171 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP--SNPNWVLISTKLG 231 +RIV IS + DKD ++ + + D+WTF R + S W L +++ Sbjct: 172 VRIVSDQISLTSDKDGHPVAG-TDAVTEFSDLWTFERPLGVAISGAAWRLAASRSA 226 >gi|302381470|ref|YP_003817293.1| import inner membrane translocase subunit Tim44 [Brevundimonas subvibrioides ATCC 15264] gi|302192098|gb|ADK99669.1| import inner membrane translocase subunit Tim44 [Brevundimonas subvibrioides ATCC 15264] Length = 214 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 83/230 (36%), Gaps = 22/230 (9%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M S I++FA I FV QL VLGKK G + + D Sbjct: 1 MPSQFL-IVIFAVIAAFVLFQLYNVLGKKVGRQPQDDAKAPPALPATGPDAP-------- 51 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + L + + FDP F++ AR +YE IV + G A Sbjct: 52 ---------LRTPGVDATLLAAAASLRARDPAFDPAKFIDGARQAYETIVRGYAAGDRAA 102 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 ++ L+ V F ++ R++ + + + + AS E + +R + + Sbjct: 103 LKPLLTPAVLDSFETGIAARETRGETEQVEFLHPPRADLELASAEGDRAVAKVRFLAELR 162 Query: 186 SASYDKDNLLISSDPEIF----GKVIDIWTFVRNIPPSNPNWVLISTKLG 231 S + P + + WTF R++ S+PNWVL + Sbjct: 163 SKIMPPADEATPGAPAEPRIEERRTAEHWTFERSLGASDPNWVLARVEPA 212 >gi|57239470|ref|YP_180606.1| hypothetical protein Erum7440 [Ehrlichia ruminantium str. Welgevonden] gi|58579448|ref|YP_197660.1| hypothetical protein ERWE_CDS_07840 [Ehrlichia ruminantium str. Welgevonden] gi|57161549|emb|CAH58476.1| conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] gi|58418074|emb|CAI27278.1| Hypothetical protein ERWE_CDS_07840 [Ehrlichia ruminantium str. Welgevonden] Length = 213 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 94/223 (42%), Gaps = 11/223 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 + ++AF+ F+F +L LG+ +G + + +I Sbjct: 1 MVELAIYAFVAAFIFFRLYNSLGRTSGLQ----------PNNHSQPVSILIQEDNNHDYT 50 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 ++D + + +M I +F K F++ + +++ I+ +F EG + L Sbjct: 51 DIDIESVMESCDDNDKSIMSTIKRKDREFSLKYFMDGSMKAFDIIIKAFNEGNTQILCSL 110 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 +D +Y F + RK+ + + +V I KI + N +IT++ + + I+ Sbjct: 111 LDKDLYNSFLTEIEYRKNLGQVYEDVIVSIIHHKITKLKLSGNIAHITVKFISEQINFVK 170 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIP-PSNPNWVLISTKLG 231 D++ ++ K+ D+WTF +++ ++ W L S + Sbjct: 171 DQEGNILQGSTSKINKIEDVWTFKKDMSLLTSKKWYLSSIQPV 213 >gi|58617502|ref|YP_196701.1| hypothetical protein ERGA_CDS_07750 [Ehrlichia ruminantium str. Gardel] gi|58417114|emb|CAI28227.1| Hypothetical protein ERGA_CDS_07750 [Ehrlichia ruminantium str. Gardel] Length = 213 Score = 131 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 95/223 (42%), Gaps = 11/223 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 + ++AF+ F+F +L LG+ +G + + +I Sbjct: 1 MVELAIYAFVAAFIFFRLYNSLGRTSGLQ----------PNNHSQPVSILIQEDNNHDYT 50 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 ++D + + +M I +F K F++ + +++ I+ +F EG + + L Sbjct: 51 DIDIESVMESCDDNDQSIMNTIKRKDREFSLKYFMDGSMKAFDIIIKAFNEGNIQILCSL 110 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 +D +Y F + RK+ + + +V I KI + N +IT++ + + I+ Sbjct: 111 LDKDLYNSFLTEIEYRKNLGQVYEDVIVSIIYHKITKLKLSGNIAHITVKFISEQINFVK 170 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIP-PSNPNWVLISTKLG 231 D++ ++ K+ D+WTF +++ ++ W L S + Sbjct: 171 DQEGNILQGSTSKINKIEDVWTFKKDMSLLTSKKWYLSSIQPV 213 >gi|296115110|ref|ZP_06833751.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter hansenii ATCC 23769] gi|295978211|gb|EFG84948.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter hansenii ATCC 23769] Length = 227 Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 97/227 (42%), Gaps = 15/227 (6%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 ++ + F+ L+LRG+LGK+ G E + + + Sbjct: 10 LDLVFLGLVAVFLVLRLRGILGKRVGAEPAAR--------TMQPTPTPAPVIEGKPEPVA 61 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + ++ TR+ +V+ I + F P F+ + +++ IV ++ G + + + + Sbjct: 62 PATTYDIPTPDTRVGQVLSAIAARQQGFTPDGFIRQVEDAFRQIVQAYAVGDIETLRQHL 121 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE----NTVYITIRIVGQFIS 186 + F ++ +R+ + ++S + I DM II+A + I +RIV +S Sbjct: 122 TESTFTAFEAAIVSRQQAHETMRSEIRDITDMAIIDAELSPDVSVPYARIEVRIVSDQVS 181 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN--WVLISTKLG 231 + D++ +S + + D+WTF R + + P W L +++ Sbjct: 182 VTLDQNGQPVSG-VDAVTEFSDLWTFERILGAATPGAQWRLGASRSA 227 >gi|117923796|ref|YP_864413.1| import inner membrane translocase, subunit Tim44 [Magnetococcus sp. MC-1] gi|117607552|gb|ABK43007.1| import inner membrane translocase, subunit Tim44 [Magnetococcus sp. MC-1] Length = 331 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 82/216 (37%), Gaps = 3/216 (1%) Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN---E 76 VF ++ +G + ++ G Y ++ + + E Sbjct: 116 AAGVFFLVKRFMGTRPPADEAAYARSHGAYRPQPQEMDQPMQREMHMPQGLPMGSGSDVE 175 Query: 77 LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136 F + + +++ ++FD F++ A+ +E + S+ + ++ L+ ++ + Sbjct: 176 DFSAQDERQQTLDRLLAEDSNFDEFTFIDGAKRCFEMLQTSWSTFDMTTLQGLLTPQMME 235 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196 + + ++N + V + ++ A E+ Y+T+R + D ++ Sbjct: 236 EVENHARQLQANGQRDVVKNVHFSEAALVEAWSEQGQDYLTVRFDVSLVEYVEDASGQVV 295 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 S D +V + W F R NPNW L + + + Sbjct: 296 SGDANHPQQVQEFWVFTRAQGARNPNWQLSAIQQAQ 331 >gi|330993443|ref|ZP_08317378.1| putative transporter protein [Gluconacetobacter sp. SXCC-1] gi|329759473|gb|EGG75982.1| putative transporter protein [Gluconacetobacter sp. SXCC-1] Length = 258 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 92/238 (38%), Gaps = 20/238 (8%) Query: 5 KMDS----GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60 M+ +++ + F+ L+LR +LG++ G E P + + E+ + Sbjct: 30 GMNFISGHFPLDLVVLGLVAVFLVLRLRSILGRRVGAE-PAVRPMAAQPAAQPMVEKPVE 88 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 E+ TR+ V+ I ++ F P++F ++ IV ++ Sbjct: 89 PPPPA-------ITYEIPTPDTRVGGVLARIAALQPGFTPQEFARGTETAFRQIVGAYAA 141 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN-----VKSSLVGIDDMKIINASIEENTVY 175 G + + + + + + F ++ +R+ + + + I ++ A+ Sbjct: 142 GDLDVLRERLTAATFGAFEAAIQSRQQAGEVLRSEIRDITDIAIIGAEVDEAAGPSPLAR 201 Query: 176 ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVR--NIPPSNPNWVLISTKLG 231 I +RIV IS + D ++ + + D+WTF R + W L +++ Sbjct: 202 IEVRIVSDQISLTVDSSGHPVAG-VDAVTEFSDLWTFERLLGVNAPGAGWRLGASRSA 258 >gi|114799709|ref|YP_758741.1| Tim44 domain-containing protein [Hyphomonas neptunium ATCC 15444] gi|114739883|gb|ABI78008.1| Tim44 domain protein [Hyphomonas neptunium ATCC 15444] Length = 204 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 23/226 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M + +L+ A + FV +L LG + G+E P KR G + + Sbjct: 1 MSNPLIEVLILAAVALFVLWRLYSALG-RGGDEGPVQR---PAPTPEKRPTPGEMPAPQP 56 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 ++ +N I G + DI + F ++F+ A+ +Y+ IV ++ G +A Sbjct: 57 RRIENERPIFTGPAAG-----ALEDIYNADRSFSTEEFMRGAKAAYQLIVGAYARGDRNA 111 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + L+D VY+ ++ +++ R + L+ I +I A ++ + + +R + Sbjct: 112 LRPLLDDDVYEAWDAAIAERDATGARA-FELLRIKKAEIDRAELDGSMARVMVRYEAEL- 169 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 D E V +IWTF+R++ S+PNW+L ++ Sbjct: 170 ------------GDGETTRIVREIWTFMRDVSSSDPNWLLDDVEVA 203 >gi|225677153|ref|ZP_03788152.1| hypothetical protein WUni_006480 [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590820|gb|EEH12048.1| hypothetical protein WUni_006480 [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 216 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 91/219 (41%), Gaps = 16/219 (7%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 ++++A + F+F +L LG+ + K+ + + Sbjct: 1 MIELVIYALLAAFIFSRLYNSLGR-------------SANLNLKKLTNVLDVSRSREDVV 47 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + + I+ DF F+ + ++E I+ F +G + ++ L Sbjct: 48 ENIEGYIDSNDENSIKVTYKQILKKNKDFSISHFIEGSSIAFELIIKCFNQGNLSQLKPL 107 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 +D +Y +F + + RK +S +V I KI+ + +N V+I + + + I+ Sbjct: 108 LDKDLYDNFAEKIKHRKE---VHESIIVSIVSQKILEIKLVKNAVFIAVYFLSEQINFVK 164 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + +IS KV D+W F +N+ S+P+W+L+S Sbjct: 165 NNKGDIISGSTSTINKVEDVWQFKKNVNSSDPSWLLVSI 203 >gi|42520013|ref|NP_965928.1| hypothetical protein WD0107 [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409750|gb|AAS13862.1| conserved domain protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 216 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 92/219 (42%), Gaps = 16/219 (7%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 ++++A + F+F +L LG+ + K+ + + Sbjct: 1 MIELVIYALLAAFIFSRLYNSLGR-------------SANLNLKKLTNVLDVSRSREDVV 47 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + + I+ DF F+ + ++E I+ F +G + ++ L Sbjct: 48 ENIEGYIDSNDENSIKVTYKQILKKNKDFSISHFIEGSSIAFELIIKCFNQGNLSQLKPL 107 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 +D +Y +F + + RK +S +V I KI+ + +N V+I + + + I+ Sbjct: 108 LDKDLYDNFAEKIKHRKE---VHESIIVSIVSQKILEIKLVKNAVFIAVYFLSEQINFVK 164 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + + +IS KV D+W F +N+ S+P+W+L+S Sbjct: 165 NNEGDIISGSTSTINKVEDVWQFKKNVNSSDPSWLLVSI 203 >gi|329891166|ref|ZP_08269509.1| tim44-like domain protein [Brevundimonas diminuta ATCC 11568] gi|328846467|gb|EGF96031.1| tim44-like domain protein [Brevundimonas diminuta ATCC 11568] Length = 205 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 82/221 (37%), Gaps = 20/221 (9%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 F I++FA I + QL VLGKK G ++ E + Sbjct: 3 FQIVIFAVIAAVLLFQLYNVLGKKVG----------------RQPEDNPKPVPVPAAPAG 46 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + L + + + +FDP FL AR +YE IV ++ +G A+ L+ Sbjct: 47 APEAARGPVVDPALTAAIAGLKTRDPNFDPHRFLEGARQAYETIVRAYAKGDRDALRPLL 106 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 +V F ++ R++ LV + A+ E + +R + + + Sbjct: 107 TDKVMGSFEAGIAAREARGDAESVELVHAPRADLELATTEGDRALAKVRFLAEVRGSLTP 166 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + + +IWTF R + S+PNW L + Sbjct: 167 SGGETV----TEERRTAEIWTFERRLGASDPNWALARVEPA 203 >gi|330813377|ref|YP_004357616.1| putative translocase transmembrane protein with Tim44 Pfam domain [Candidatus Pelagibacter sp. IMCC9063] gi|327486472|gb|AEA80877.1| putative translocase transmembrane protein with Tim44 Pfam domain [Candidatus Pelagibacter sp. IMCC9063] Length = 193 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 86/219 (39%), Gaps = 35/219 (15%) Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINEL 77 I F+FL+LR VLGK D I K +D+ + E+ Sbjct: 1 MIAGFIFLRLRNVLGK-------------------GADNSPIKPNFANKSRDDFSFVKEV 41 Query: 78 FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD 137 + FD F A +YE I+++F +G +++ L+ ++Y D Sbjct: 42 RTESNK------------PVFDEASFKKGAEYAYEMIINAFAKGDKQSLKPLLTKKLYLD 89 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197 F + R + + +GI+ M I S +T R + Q I+ ++ ++ Sbjct: 90 FEKIIDDRNEKKLTSSLTFIGIEKMSIDKVSNVNTKYKVTARFISQIINCLKNEKGEVVE 149 Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWVL----ISTKLGE 232 D E D+W+F R++ S+P W L T+ E Sbjct: 150 GDAEKTKTTTDVWSFERDLKDSDPTWYLTELSAETENSE 188 >gi|4098584|gb|AAD00329.1| unknown [Rhodobacter capsulatus] Length = 183 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 85/182 (46%), Gaps = 6/182 (3%) Query: 49 YVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR 108 R + G D +D + P G+ + + V F+ FL ++ Sbjct: 4 EAPGPRAADRFEVIEGGPDHDIIDHV----PEGSDAAVALAQMKRVEPTFNVGAFLQGSK 59 Query: 109 NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS 168 +YE I+ +F G + A+ + + V + F +++ R+ V++S +G+ ++ + AS Sbjct: 60 VAYEMILMAFERGDLSAVRRFLAPEVLEAFETAVADRQRQGLTVEASFLGLRELVLTEAS 119 Query: 169 IEE--NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 E +T+R G+ IS + D + ++ DP+ K D WTF R + S+PNW L+ Sbjct: 120 FNESSREAEVTVRFGGELISVARDANGQIVEGDPKAPRKQRDSWTFARVMGSSDPNWQLV 179 Query: 227 ST 228 +T Sbjct: 180 AT 181 >gi|68171233|ref|ZP_00544637.1| Mitochondrial import inner membrane translocase, subunit Tim44 [Ehrlichia chaffeensis str. Sapulpa] gi|88658281|ref|YP_507053.1| tim44-like domain-containing protein [Ehrlichia chaffeensis str. Arkansas] gi|67999353|gb|EAM85998.1| Mitochondrial import inner membrane translocase, subunit Tim44 [Ehrlichia chaffeensis str. Sapulpa] gi|88599738|gb|ABD45207.1| tim44-like domain protein [Ehrlichia chaffeensis str. Arkansas] Length = 212 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 99/222 (44%), Gaps = 10/222 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 + ++AF+ F+F +L LGK +G + + I+ + Sbjct: 1 MVELAIYAFLAAFIFFRLYHSLGKTSGLQ----------SNSHSQTISIIMEDTQEHDTA 50 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 ++D + + ++ I +F + F++ + ++E I+ +F EG +H + L Sbjct: 51 DIDIDSVMEICNENDKSIINHIKKKDKEFSLRHFMDGSIKAFEIIIKAFNEGNIHILSML 110 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 +D+ +Y F + + RK+ + + +V I KI S+ N YIT++ + + I+ Sbjct: 111 LDTNLYNSFVEEIENRKALGQLYEDIIVSITSHKITKLSLSGNIAYITVKFISEQINFVK 170 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 DKD+ ++ K+ D WTF ++ SN W L + + Sbjct: 171 DKDDNILQGSTSKINKIEDTWTFRKDTTLSNKKWYLSTIQSV 212 >gi|197103473|ref|YP_002128850.1| hypothetical protein PHZ_c0007 [Phenylobacterium zucineum HLK1] gi|196476893|gb|ACG76421.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 205 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 84/225 (37%), Gaps = 23/225 (10%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 +++FA + V QL VLG++ G + + +R G Sbjct: 2 QVLELIIFAGLAAIVLYQLYSVLGRRVGRQPEDQAAAEPAQGSVRAVDRMAEPADDG--- 58 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 + + ++ FD FL A+ +YE IV +F +G ++ Sbjct: 59 --------------VALTGLAAVKALDPSFDVGHFLGGAKQAYEMIVRAFADGDRATLKN 104 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE-ENTVYITIRIVGQFISA 187 L+ +V F ++ R++ + + A + + +T+R + +F S Sbjct: 105 LLAPQVLASFEAAIDQREAEGRTESVEFFHPPRADLEKADVTGADLGRVTVRFLAEFRSR 164 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + + + + ++WTF RN+ +PNW+L+ E Sbjct: 165 TKGPEGEAVDD-----RRTAELWTFERNLKSRDPNWMLVHVDAAE 204 >gi|58696732|ref|ZP_00372276.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila simulans] gi|58698125|ref|ZP_00373048.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila ananassae] gi|225629991|ref|YP_002726782.1| hypothetical protein WRi_001450 [Wolbachia sp. wRi] gi|58535371|gb|EAL59447.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila ananassae] gi|58537084|gb|EAL60206.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila simulans] gi|225591972|gb|ACN94991.1| hypothetical protein WRi_001450 [Wolbachia sp. wRi] Length = 216 Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 91/219 (41%), Gaps = 16/219 (7%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 ++++A + F+F +L LG+ + K+ + + Sbjct: 1 MIELVIYALLAAFIFSRLYNSLGR-------------SANLNLKKLTSVLDVSRSREDVV 47 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + I+ DF F+ + ++E I+ F +G + ++ L Sbjct: 48 ENIEGYIDSNDENSIKVTYEQILKKNKDFSISHFIEGSSIAFELIIKYFNQGNLSQLKPL 107 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 +D +Y +F + + RK +S +V I KI+ + +N V+I + + + I+ Sbjct: 108 LDKDLYDNFAEKIKHRKE---VHESIIVSIVSQKILEIKLVKNVVFIAVYFLSEQINFVK 164 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + + +IS KV D+W F +N+ S+P+W+L+S Sbjct: 165 NNEGDIISGSTSTINKVEDVWQFKKNVNSSDPSWLLVSI 203 >gi|254417984|ref|ZP_05031708.1| Tim44-like domain superfamily [Brevundimonas sp. BAL3] gi|196184161|gb|EDX79137.1| Tim44-like domain superfamily [Brevundimonas sp. BAL3] Length = 213 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 81/225 (36%), Gaps = 22/225 (9%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 F I++FA I V QL VLGK+ G + S + L Sbjct: 5 FQIVIFAVIAAIVLFQLYNVLGKRVGRQPQEDAKALPSSPTSTAEASKTPAL-------- 56 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + + FDP F+ AR +YE IV + G A+ L+ Sbjct: 57 ----------DAATLASIAGLKARDPAFDPNRFVEGARQAYETIVRGYAAGDRAALTPLL 106 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 V F+ ++ R++ + + + A+++ + +R + + S Sbjct: 107 TPNVMASFDAGIAARETRGETETVEFLFPPRADLEGATVQGDKAVAKVRFLAELRSRVTK 166 Query: 191 KDNLL---ISSDP-EIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++ +P + + WTF R + ++PNWVL + Sbjct: 167 ASGDTADSVTGEPLVEERRTAEHWTFERTLGAADPNWVLARVEPA 211 >gi|58584799|ref|YP_198372.1| hypothetical protein Wbm0542 [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419115|gb|AAW71130.1| Uncharacterized conserved protein related to eukaryotic translocase of inner mitochondrial membrane [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 218 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 88/219 (40%), Gaps = 16/219 (7%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 ++++A + FVF +L LG+ T + K+ + + Sbjct: 1 MIELVIYALLAAFVFSRLYNSLGRST-------------SLNLKKLTSVLDISQVREDVV 47 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + I+ DF F+ + +E I+ F +G + ++ L Sbjct: 48 ENIEDYIDSNDKDPIKATYEQILQKNKDFSISHFMEGSGVVFELIIKYFNQGNLSQLKPL 107 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 +D +Y +F + RK +S +V I KI+ + +N V+I + + + I+ Sbjct: 108 LDKDLYNNFAGKIKQRKE---IYESIIVSIVSQKILEIKLVKNVVFIAVYFLSEQINFVK 164 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + +IS KV D+W F +N+ SNP+W+L S Sbjct: 165 NDKGDVISGSTSTINKVEDVWQFKKNVTSSNPSWLLTSI 203 >gi|190571472|ref|YP_001975830.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018875|ref|ZP_03334683.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357744|emb|CAQ55195.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995826|gb|EEB56466.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 219 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 89/219 (40%), Gaps = 16/219 (7%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 ++++A + F+F +L LG+ + K+ + + Sbjct: 1 MIELVIYALLAAFIFSRLYNSLGR-------------SASLNLKKLTGVLDVSQSKEDVV 47 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + + I+ +F +F+ + ++E I+ F +G + ++ L Sbjct: 48 ENIEDYIYSNDKSSIETTYEQILQKNKEFSISNFIEGSSIAFELIIKYFNQGNLPQLKSL 107 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 +D +Y F D + RK +S +V I KI+ + +N ++I + + + I+ Sbjct: 108 LDKDLYNSFVDKIKHRKE---THESIIVSIVSQKILEIKLVKNVIFIAVYFLSEQINFVK 164 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + + + S KV D+W F +NI S+ W+L+S Sbjct: 165 NNEGNITSGSMSTINKVEDVWQFKKNINSSDLTWLLVSI 203 >gi|58040316|ref|YP_192280.1| putative translocase transmembrane protein [Gluconobacter oxydans 621H] gi|58002730|gb|AAW61624.1| Putative translocase transmembrane protein [Gluconobacter oxydans 621H] Length = 265 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 98/244 (40%), Gaps = 25/244 (10%) Query: 12 LILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 +++ + + ++L VLG++ G E+P +GF G + D Sbjct: 23 DLVVLFVLAVALGVRLYRVLGRRVGMQGVRQERPGAGFGPGAQKGAAPDAARPSIPPPLP 82 Query: 67 --------------KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 + D E+ TR+ V+ +I SV+ F P FL EA ++ Sbjct: 83 GQVAGKPGAAPGVFDQAVPDVAYEIPAPATRVGTVLGEIGSVFPGFSPDGFLKEAEGTFR 142 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL-----VGIDDMKIINA 167 +V +F G A+EKL+ F+ ++ R + +S L + I D +++A Sbjct: 143 QVVPAFAVGDRTALEKLLTPASMDSFSAAIDARVQAGETQRSDLRGIESLSILDAMLVSA 202 Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 I ++IV + ++ D++ + E + D+W F R S+ W L + Sbjct: 203 EDGTRVGRIEVKIVSRQVNILTDREGEPVVG-TEAVTEFHDLWLFERVAGQSDARWRLAA 261 Query: 228 TKLG 231 ++ Sbjct: 262 SRPA 265 >gi|114571519|ref|YP_758199.1| import inner membrane translocase Tim44 [Maricaulis maris MCS10] gi|114341981|gb|ABI67261.1| import inner membrane translocase, subunit Tim44 [Maricaulis maris MCS10] Length = 206 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 49/217 (22%), Positives = 87/217 (40%), Gaps = 17/217 (7%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 D L+ F +L VLG++ G+ + + + + +G Sbjct: 2 DIWTLIGGVAAIFFAYRLYTVLGRREGHMEAPAPRTKPEAASDSDKAPSLRPAFEGPAAA 61 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 L++I V T FDP A+N+Y IV++F G +E L Sbjct: 62 GLEAIAA-----------------VDTRFDPTAVKEGAQNAYVMIVEAFAAGDRKVLEPL 104 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + V + ++ R + V++ + + D+ II A +NT I +R V + + + Sbjct: 105 LAPNVLDRYTTAIDQRADRGETVRTEVERLKDVDIIEAGHADNTARIKVRFVAEIATETR 164 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 D D+ +++ D V + W F R +PNWVL Sbjct: 165 DSDDAVVAGDIGRLSTVTEDWVFERRTNKGDPNWVLT 201 >gi|295691579|ref|YP_003595272.1| import inner membrane translocase subunit Tim44 [Caulobacter segnis ATCC 21756] gi|295433482|gb|ADG12654.1| import inner membrane translocase subunit Tim44 [Caulobacter segnis ATCC 21756] Length = 198 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 89/223 (39%), Gaps = 26/223 (11%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 IL A + V QL LG++ G + ++ + G Sbjct: 1 MLQILFLAAVAAIVLYQLYATLGRRVGRQ---------------PEDTPVKAGAGGPAPV 45 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 D L + + + + DFDP F+ AR +YE IV ++ +G ++ L Sbjct: 46 TTDPHPVLRS------EGLAALKARQPDFDPAKFMTGARAAYEQIVTAYADGDRETLKPL 99 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + V +F +++ R++ ++ K + + + + + +T +RI+ + + + Sbjct: 100 LAPEVMANFEQAMAAREAAGRSEKVEFLTSPRLDLESVDLVGDTAKAVVRILAEVRTRTK 159 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D+ + + ++WTF R + +NPNW+L E Sbjct: 160 DERGEGVDD-----RRTAELWTFEREVRNANPNWLLSFVAAAE 197 >gi|254295483|ref|YP_003061506.1| import inner membrane translocase subunit Tim44 [Hirschia baltica ATCC 49814] gi|254044014|gb|ACT60809.1| import inner membrane translocase subunit Tim44 [Hirschia baltica ATCC 49814] Length = 200 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 26/223 (11%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 D +++FA + FFV +L VLG KTG E P S + D Sbjct: 2 DIELIIFAAVAFFVLYRLYSVLGTKTGAEPPPSVVREATQKRKNSEG-----------SD 50 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + M +I + + F P DF +++ +YE IV++F EG + L Sbjct: 51 ESNVTPFRPSFTGPGASAMEEISQIDSTFSPSDFTRKSKKAYEMIVEAFAEGDKETLSNL 110 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYITIRIVGQFISAS 188 + VY+ + ++ R+ N L+ + +I +A ++ + +++ Q Sbjct: 111 LVDDVYEAYVSAIDEREQNN-TEPLRLMRLKSAEIADAELLDGDIGQVSVSFEAQLS--- 166 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 D E +IWTF R++ SNP W+L Sbjct: 167 ----------DGENLRTAKEIWTFERSLKSSNPAWLLGGVSEA 199 >gi|16127971|ref|NP_422535.1| hypothetical protein CC_3741 [Caulobacter crescentus CB15] gi|221236793|ref|YP_002519230.1| transporter [Caulobacter crescentus NA1000] gi|13425513|gb|AAK25703.1| conserved hypothetical protein [Caulobacter crescentus CB15] gi|220965966|gb|ACL97322.1| transporter [Caulobacter crescentus NA1000] Length = 234 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 29/223 (13%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F IL A + V QL LG++ G ++ E +T G Sbjct: 40 VFQILFLAAVAALVLYQLYSTLGRRVG----------------RQPEDAAVTAMPGAAPA 83 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 +D + + + + + + DFDP FL R +YE IV ++ EG + L Sbjct: 84 PVDPVLQ--------AEGVATLRARQPDFDPARFLMGVRAAYEQIVKAYAEGDRETLTPL 135 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + V +F ++ R++ + K + + + + +T +RI+ + + + Sbjct: 136 LAPDVMDNFERAMVARETAGRTEKVEFLTPPRVDLERVDVVGDTAKAVVRILAEVRTRTK 195 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D+ + + ++WTF R + ++PNW L E Sbjct: 196 DERGEGVDD-----RRTAELWTFEREVKSTDPNWHLTFVAAAE 233 >gi|167648993|ref|YP_001686656.1| import inner membrane translocase subunit Tim44 [Caulobacter sp. K31] gi|167351423|gb|ABZ74158.1| import inner membrane translocase subunit Tim44 [Caulobacter sp. K31] Length = 199 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 83/223 (37%), Gaps = 25/223 (11%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F ++ A + + QL LG++ G + Sbjct: 1 MFEWIILAALAAVILYQLYATLGRRVGRQ--------------------PEDAPAAVPAS 40 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + + + + + DFD FL+ AR +YE IV +F G ++ L Sbjct: 41 VAPRDVKTLEVPGEALSGLAALRARQADFDIGHFLSGARQAYEMIVKAFAAGDRETLKPL 100 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + + V +F +++ R++ + K+ + + + +E + +RI+ + + S Sbjct: 101 LAADVMANFEAAIADREAAGRTEKAEFLATPRTDLDSIKVEGDVARAVVRILAEVRTRST 160 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + + D+WTF R++ NPNW L+ + E Sbjct: 161 SAAGDAVDD-----RRTADLWTFERDLKSRNPNWTLVRVDVAE 198 >gi|322420322|ref|YP_004199545.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M18] gi|320126709|gb|ADW14269.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M18] Length = 322 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 76/220 (34%), Gaps = 13/220 (5%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 F I+L A I ++ R V +++ E P +G G + + ++ Sbjct: 115 FDIVLLAGI-CYLIY--RMVKKRRS--ETPLQSVSTGYGSQ------GYDSPQQYQENSI 163 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 S P + + + + FD F + +++ I + + A+ L+ Sbjct: 164 PASYRVDEPPQADIYTGISHLRQMDPGFDEARFKDLVMDNFFRIQGGWMNRDLQALSALL 223 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 + F + + + + + + + ++ E Y+T+ I + + D Sbjct: 224 TPEMQGVFREDIERLLRDGRVNRLENIAVRSVEFSEVWQEAGQDYVTVLIYANLLDYTTD 283 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + +++ K + WTF R + N W L Sbjct: 284 EQGTVVAGSKTEPVKFEEHWTFTRPVG--NNPWRLSGINQ 321 >gi|56552532|ref|YP_163371.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis subsp. mobilis ZM4] gi|260753807|ref|YP_003226700.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56544106|gb|AAV90260.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis subsp. mobilis ZM4] gi|258553170|gb|ACV76116.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 217 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 8/206 (3%) Query: 27 LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK 86 L VLG++TG+E+ F+ + ++ +KK + Sbjct: 18 LYNVLGRRTGHEQSFTKPAEVSTTVVAQPNTALLMPASEQKKREEI-------VQPEAWD 70 Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 +R IVS FD F+ A+++Y I+++F++ + +V V++ F + R+ Sbjct: 71 GIRRIVSRDAHFDLTGFIEGAKSAYGKILEAFWQNDRSKLADMVSKDVFEAFQQVIEKRE 130 Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 + +++ LV ID + A IE + IT+ + + + ++I+ Sbjct: 131 AEGSRLENRLVNIDKALVQKAGIEGDNAIITVSYDAWISTMLRNHEGIMIAGSSTDALPT 190 Query: 207 IDIWTFVRNIPP-SNPNWVLISTKLG 231 D+WTF R+I NW+L+ T Sbjct: 191 HDVWTFSRSIKQEPKTNWLLVETLAA 216 >gi|241762227|ref|ZP_04760309.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373274|gb|EER62893.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 217 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 8/206 (3%) Query: 27 LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK 86 L VLG++TG+E+ F+ + ++ +KK + Sbjct: 18 LYNVLGRRTGHEQSFTKPTEVSTTVVAQPNTALLMPASEQKKREEI-------VQPEAWD 70 Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 +R IVS FD F+ A+++Y I+++F++ + +V V++ F + R+ Sbjct: 71 GIRRIVSRDAHFDLTGFIEGAKSAYGKILEAFWQNDRSKLADMVSKDVFEAFQQVIEKRE 130 Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 + +++ LV ID + A IE + IT+ + + + ++I+ Sbjct: 131 AEGSRLENRLVNIDKALVQKAGIEGDNAIITVSYDAWISTMLRNHEGIMIAGSSTDALPT 190 Query: 207 IDIWTFVRNIPP-SNPNWVLISTKLG 231 D+WTF R+I NW+L+ T Sbjct: 191 HDVWTFSRSIKQEPKTNWLLVETLAA 216 >gi|296535049|ref|ZP_06897314.1| Tim44 domain protein [Roseomonas cervicalis ATCC 49957] gi|296264626|gb|EFH10986.1| Tim44 domain protein [Roseomonas cervicalis ATCC 49957] Length = 165 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 1/155 (0%) Query: 77 LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136 + T + + ++ I FDP FL A ++ IV +F G + L+ Y Sbjct: 12 VPDPRTPVGQALQRIRQADAGFDPYAFLGGAEGAFRMIVTAFAAGDRATLRDLLSEDTYA 71 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196 F +++ R+S + ++ + G+ +M I A + + IT+RIV ++ + + Sbjct: 72 GFEQAITARESAGERQRTEIHGVHEMAIDAADLRGSVADITLRIVSDQVNLTTGPQGEAV 131 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 S E ++ D+WTF R++ +P W L+ T+ Sbjct: 132 SG-TEAVTELTDVWTFQRDLRSGDPTWKLVGTQAA 165 >gi|11992022|gb|AAG42409.1|AF300471_12 unknown [Zymomonas mobilis subsp. mobilis ZM4] Length = 201 Score = 118 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 8/206 (3%) Query: 27 LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK 86 L VLG++TG+E+ F+ + ++ +KK + Sbjct: 2 LYNVLGRRTGHEQSFTKPAEVSTTVVAQPNTALLMPASEQKKREEI-------VQPEAWD 54 Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 +R IVS FD F+ A+++Y I+++F++ + +V V++ F + R+ Sbjct: 55 GIRRIVSRDAHFDLTGFIEGAKSAYGKILEAFWQNDRSKLADMVSKDVFEAFQQVIEKRE 114 Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 + +++ LV ID + A IE + IT+ + + + ++I+ Sbjct: 115 AEGSRLENRLVNIDKALVQKAGIEGDNAIITVSYDAWISTMLRNHEGIMIAGSSTDALPT 174 Query: 207 IDIWTFVRNIPP-SNPNWVLISTKLG 231 D+WTF R+I NW+L+ T Sbjct: 175 HDVWTFSRSIKQEPKTNWLLVETLAA 200 >gi|78223134|ref|YP_384881.1| import inner membrane translocase subunit Tim44 [Geobacter metallireducens GS-15] gi|78194389|gb|ABB32156.1| import inner membrane translocase, subunit Tim44 [Geobacter metallireducens GS-15] Length = 322 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 78/216 (36%), Gaps = 10/216 (4%) Query: 16 FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 I ++L R V ++ +++ R ++ ++ Sbjct: 117 ILLIGGVLYLIYRFVASRRR-------ETAQTSGYGAQQTWRQAESVEPPPRQYGFGQTA 169 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 + P+ + + + + FD F A++ + + ++ + + L+ + Sbjct: 170 QAAPVD-ETSFGLAHVRQMDGSFDENRFKETAQDIFFRVQGAWTRRDLSPVADLLTPEMQ 228 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 F + K+ + + + ++ I A EE Y+T+R++ + + D+ + Sbjct: 229 VTFRQQIDELKAAGTINRLENISVREVNITEAWQEEGRDYLTVRLLASILDYTTDESGKV 288 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 +S K + WTF R + NP W L + + Sbjct: 289 VSGSDSAPVKFEEYWTFSRPVG-PNP-WKLSAIQQA 322 >gi|253699913|ref|YP_003021102.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M21] gi|251774763|gb|ACT17344.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M21] Length = 318 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 73/222 (32%), Gaps = 17/222 (7%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F ILL A I ++ R V +++ + + + + Sbjct: 114 IFEILLLAGI-GYLIY--RMVKKRRS------------EAAALQGAGSYSYGGYEPQGAA 158 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 L P + + + + FD F ++ + + I + + A+ L Sbjct: 159 IPAPYRVLEPSANDVATGLSHLRQMDPGFDEGRFNDQVMDHFFKIQGGWMNRDLAALSPL 218 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V + F D + + + + + + ++I E Y+T I + + Sbjct: 219 VTEEMKGIFRDDIDRLLRDRQVNRLENIAVRKVEIAEVWQEAGQDYVTALIYANLLDYTT 278 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 D++ +++ K ++WTF R + N W L Sbjct: 279 DENGQVVAGSKTEPVKFEELWTFARPVG--NNPWRLSGINQV 318 >gi|261253352|ref|ZP_05945925.1| hypothetical protein VIA_003377 [Vibrio orientalis CIP 102891] gi|260936743|gb|EEX92732.1| hypothetical protein VIA_003377 [Vibrio orientalis CIP 102891] Length = 292 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 77/223 (34%), Gaps = 23/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +R +LG K G+ + K ++ + + + Sbjct: 92 GIQFMDILIMGLIAFVIFKLMRSMLGAKQGSMNQQRQQPAFGGSAPKFEQPNVHNFEQPQ 151 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + FD F+N +R Y + ++ ++H I Sbjct: 152 NAPQGGGFGFGAQTDVP--------HNYPPGFDQSAFINGSREHYRILQGAWNHNQLHTI 203 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E+ V +Y+D + + + V D +I+ A + ++++ G++ Sbjct: 204 EEYVSPSLYEDLKAERAKLNGE----QHTDVMYVDAEIVRADHDATKAQLSLQFSGRYRD 259 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A + E DIW R++ N W+++ + Sbjct: 260 A--------VEGIEEDI---TDIWHLERDLTTPNAPWLIVGIQ 291 >gi|39996193|ref|NP_952144.1| putative lipoprotein [Geobacter sulfurreducens PCA] gi|39982958|gb|AAR34417.1| lipoprotein, putative [Geobacter sulfurreducens PCA] Length = 321 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 78/225 (34%), Gaps = 17/225 (7%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 G F ILL I ++ + V ++ + + Sbjct: 114 GVGLFDILLIGGI-LYLVYRF--VASRR------------REAAATAGRAPDWSREEPVT 158 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + + + + + F + F A++ + + ++ + + Sbjct: 159 PQQYRYGQPAESVPAAGADSGLAHVRQMDGSFSEEQFRQLAQDVFFRVQGAWTRRDLSSA 218 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 +++ + + ++ K+ + + + + ++++ A EE +IT+R + + Sbjct: 219 REVLAPEMERALQGDVAELKARGQVNRLENIAVRQVELVEAWQEEGCDFITVRFLANLLD 278 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + D++ ++S K + WTF R + NP W L + + Sbjct: 279 YTTDEEGRVLSGSDREPVKFEEFWTFTRPVG-PNP-WKLSAIQQA 321 >gi|254796736|ref|YP_003081572.1| hypothetical protein NRI_0348 [Neorickettsia risticii str. Illinois] gi|254589983|gb|ACT69345.1| conserved hypothetical protein [Neorickettsia risticii str. Illinois] Length = 208 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 87/218 (39%), Gaps = 13/218 (5%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 ++L+A + FF+F +L G+ + + + K + Sbjct: 1 MELVLYAILVFFIFNRLYASFGR------------VSVERELGFKAAEVKEILEKKVRAI 48 Query: 71 LDSINELFPIGTRLNKVMRDIVSVY-TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + ++I S++ DF F+ A ++E +F + + + KL Sbjct: 49 DQFTYVAPSDLQEIVSAKKEIESLWKQDFSTDRFMEGAERAFEMFTKAFTDCDLKVLSKL 108 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + + + ++ ++ RK ++ +LV + +I + + +Y T+R V + I+ Sbjct: 109 LSKKAFSVVSEKVAQRKIRGNTLERTLVALRSKNLIKLDVIKGVLYATVRFVSEQINVVR 168 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 D ++S D + + D W F R++ N +WV+ Sbjct: 169 DDAGRILSGDHDTIEVIEDKWVFERSLRSPNNSWVVCE 206 >gi|197119310|ref|YP_002139737.1| transport protein [Geobacter bemidjiensis Bem] gi|197088670|gb|ACH39941.1| transport protein, Tim44-like domain, putative [Geobacter bemidjiensis Bem] Length = 318 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 75/222 (33%), Gaps = 18/222 (8%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F ILL A I ++ R V +++ +G +S + Sbjct: 115 IFEILLLAGI-GYLIY--RMVKKRRSEAALQGAGSYSYGGYEQQ-------------GAT 158 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + P + + + + FD F + +++ I + + + L Sbjct: 159 ISAPYRVIEPSYNDVATGLSHLRQMDPGFDEGRFNDLVMDNFFKIQGGWMNRDLAVLAPL 218 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V + F D + + + + + + +++I E Y+T RI + + Sbjct: 219 VTEEMKGIFRDDIDRLLRDRQVNRLENIAVRNVEITEVWQEAGQDYVTARIYANLLDYTT 278 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 D++ +I+ K ++WTF R + N W L Sbjct: 279 DENGQVITGSKTEPVKFEELWTFARPVG--NNPWRLSGINQV 318 >gi|307634800|gb|ADN78334.1| transport protein, Tim44-like domain, putative [Geobacter sulfurreducens KN400] Length = 321 Score = 113 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 79/225 (35%), Gaps = 17/225 (7%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 G F ILL I ++ + V ++ + + Sbjct: 114 GVGLFDILLIGGI-LYLVYRF--VASRR------------REAAATAGRAPDWSREEPVT 158 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + + + + + F + F A++ + + ++ + + Sbjct: 159 PQQYRYGQPAESVPAAGADSGLAHVRQMDGSFSEEQFRQLAQDVFFRVQGAWTRRDLSSA 218 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 +++ + + ++ K+ + + + + ++++ A EE + +IT+R + + Sbjct: 219 REVLAPEMERALQGDVAELKARGQVNRLENIAVRQVELVEAWQEEGSDFITVRFLANLLD 278 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + D++ ++S K + WTF R + NP W L + + Sbjct: 279 YTTDEEGRVLSGSDREPVKFEEFWTFTRPVG-PNP-WKLSAIQQA 321 >gi|37679309|ref|NP_933918.1| hypothetical protein VV1125 [Vibrio vulnificus YJ016] gi|320156948|ref|YP_004189327.1| hypothetical protein VVM_03684 [Vibrio vulnificus MO6-24/O] gi|326424146|ref|NP_761953.2| hypothetical protein VV1_3163 [Vibrio vulnificus CMCP6] gi|37198052|dbj|BAC93889.1| conserved hypothetical protein [Vibrio vulnificus YJ016] gi|319932260|gb|ADV87124.1| hypothetical protein VVMO6_02102 [Vibrio vulnificus MO6-24/O] gi|319999531|gb|AAO11480.2| hypothetical protein VV1_3163 [Vibrio vulnificus CMCP6] Length = 289 Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 79/223 (35%), Gaps = 24/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +RG+L K G+ + K ++ + + Sbjct: 90 GIQFMDILIIGLIAFVIFKLMRGLLASKQGSMNQHRQQPAFGGQAPKFEQSNVHNFEQSP 149 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 G + FD F+N AR Y + ++ ++ I Sbjct: 150 NTPT---------GGFGFGAQSDVPHNYPPGFDQVAFVNGAREHYRILQGAWNHNQLETI 200 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E+ V +++D + + + V D +I+ A + +T +++++ G++ Sbjct: 201 EEYVSPSLFEDLKAERAKLDGE----QHTDVMYVDAQIVRADYDASTAHLSLQFSGRYRD 256 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A + E DIW R++ N W+++ + Sbjct: 257 A--------VEGIEEDI---TDIWHLERDLTAPNAPWMIVGIQ 288 >gi|59712270|ref|YP_205046.1| Tim44-like domain-contain protein [Vibrio fischeri ES114] gi|59480371|gb|AAW86158.1| Tim44-like domain family [Vibrio fischeri ES114] Length = 297 Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 78/224 (34%), Gaps = 18/224 (8%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ A I F +F R ++ K G+ G + + + Sbjct: 92 GIQFMDILIMAGIAFILFKVFRSMMAAKAGSMNQRQGAAYAGPQGQQDAQPSFRDNQQYF 151 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + D G + FD + F+N +R Y + ++ ++ I Sbjct: 152 QAD---QATAQPTGGFGAASADDVPHNYPPGFDMQAFINGSREHYRILQGAWNHNQLETI 208 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 ++ V +Y D +T + + + V D +++ A + N ++++ G++ Sbjct: 209 QEYVSISLYNDLVQERATLEGE----QHTDVMYVDAEVVRADYDANRAQLSLQFSGRYRD 264 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 A + E DIW R++ N W++I + Sbjct: 265 A--------VEGIEEDI---TDIWHLERDLTQPNAPWLIIGIQA 297 >gi|197334926|ref|YP_002156484.1| import inner membrane translocase, subunit Tim44 [Vibrio fischeri MJ11] gi|197316416|gb|ACH65863.1| import inner membrane translocase, subunit Tim44 [Vibrio fischeri MJ11] Length = 297 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 78/224 (34%), Gaps = 18/224 (8%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ A I F +F R ++ K G+ G + + + Sbjct: 92 GIQFMDILIMAGIAFILFKVFRSMMAAKAGSMNQRQGAAYAGPQGQQDAQPSFRDNQQYF 151 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + D G + FD + F+N +R Y + ++ ++ I Sbjct: 152 QAD---QATTQPTGGFGAASADDVPHNYPPGFDMQSFINGSREHYRILQGAWNHNQLETI 208 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 ++ V +Y D +T + + + V D +++ A + N ++++ G++ Sbjct: 209 QEYVSISLYNDLVQERATLEGE----QHTDVMYVDAEVVRADHDANRAQLSLQFSGRYRD 264 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 A + E DIW R++ N W++I + Sbjct: 265 A--------VEGIEEDI---TDIWHLERDLTQPNAPWLIIGIQA 297 >gi|289609222|emb|CBI60483.1| unnamed protein product [Sordaria macrospora] Length = 173 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 82/182 (45%), Gaps = 9/182 (4%) Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINEL 77 + F+ ++L VLGK+TG+E + + + + R I + + + Sbjct: 1 MVAAFLAMRLYAVLGKRTGHE--PLPRTADERIATPPVARPIEVTPEAR-------VLGP 51 Query: 78 FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD 137 + + +R +++ FD F+ A+++Y I+++F++G +E L + V + Sbjct: 52 RHVESGAESGLRSLIAADPSFDVAQFIEGAKSAYRMILEAFWKGDEATLEWLTERDVREA 111 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197 F +++ R + + + LV I+ + AS+E +++R + + D + +++ Sbjct: 112 FAQAIADRNAAGHVLDNRLVSIERAVVTEASVEGGVARVSVRFDADIAAITRDAEGNIVA 171 Query: 198 SD 199 Sbjct: 172 GS 173 >gi|88608273|ref|YP_506249.1| Tim44-like domain-containing protein [Neorickettsia sennetsu str. Miyayama] gi|88600442|gb|ABD45910.1| Tim44-like domain protein [Neorickettsia sennetsu str. Miyayama] Length = 208 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 87/218 (39%), Gaps = 13/218 (5%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 ++L+A + FF+F +L G+ + + + K +D Sbjct: 1 MELILYAILVFFIFNRLYASFGR------------ISVERELGFKAAEVKEILEKKVRDI 48 Query: 71 LDSINELFPIGTRLNKVMRDIVSVY-TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + ++I S++ DF F+ A ++E +F + + + KL Sbjct: 49 DQFTYVAPSDLQEIVSAKKEIESLWKQDFSTDRFMEGAERAFEMFTKAFTDCDLKVLSKL 108 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + + + ++ + RK ++ +LV + +I + + +Y T+R V + I+ Sbjct: 109 LSKKAFSVVSEKIEQRKIRGNTLERTLVALRSKNLIKLDVIKGVLYATVRFVSEQINVVR 168 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 D ++S D + + D W F R++ + +WV+ Sbjct: 169 DDAGRVLSGDHDTIEVIEDKWIFERSLKSPHNSWVVCE 206 >gi|120600531|ref|YP_965105.1| import inner membrane translocase subunit Tim44 [Shewanella sp. W3-18-1] gi|120560624|gb|ABM26551.1| import inner membrane translocase, subunit Tim44 [Shewanella sp. W3-18-1] Length = 291 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 89/231 (38%), Gaps = 23/231 (9%) Query: 3 FIKMDS---GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59 F+ IL+ + F +F +R V+ K G + + +G+ + + ++ Sbjct: 81 FMGEGFENIQFMDILIIGLLAFVLFKIVRTVMASKAGAQPRPAYAGAGQPNPNFQRQQAE 140 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 T +N +S + F ++ FD FL AR+ Y+ + ++ Sbjct: 141 QTGFASNATNNANSGSHGFAQ-----AASDVPFNLPAGFDLPGFLEGARSHYKTLQLAWN 195 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 E + I++ V ++ + ++ + + + V D +++ A+ N ++++ Sbjct: 196 ENDLSKIQEYVSIELFNELSNQRRELVGD----QHTEVMFLDAELVRATHTANLAEVSVK 251 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G++ + E ++W RN+ +N W+++ + Sbjct: 252 FSGRYRDT--------VEGVEEDIK---EVWHLERNVAQANSPWLIVGIEQ 291 >gi|254507626|ref|ZP_05119759.1| import inner membrane translocase, subunit Tim44 [Vibrio parahaemolyticus 16] gi|219549513|gb|EED26505.1| import inner membrane translocase, subunit Tim44 [Vibrio parahaemolyticus 16] Length = 292 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 80/223 (35%), Gaps = 23/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +RG+LG K G+ + K ++ + + + Sbjct: 92 GIQFMDILIIGLIAFVIFKLMRGMLGAKQGSMNQQRQQPAFGGSAPKFEQPNVHNFEQPQ 151 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + + + FD F+N +R Y + ++ ++ I Sbjct: 152 QTGSQGGFGFGSQTDVP--------HNYPPGFDHAAFINGSREHYRILQGAWNHNQLETI 203 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E+ V ++ D + + + + V D +I+ A + + ++++ G++ Sbjct: 204 EEYVSPSLFADLKSERAKLEGE----QHTDVMYVDAEIVRADYDASKAQLSLQFSGRYRD 259 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A + E DIW R++ N W+++ + Sbjct: 260 A--------VEGIEEDIA---DIWHLERDLTVPNAPWLIVGIQ 291 >gi|323491921|ref|ZP_08097090.1| hypothetical protein VIBR0546_04127 [Vibrio brasiliensis LMG 20546] gi|323313779|gb|EGA66874.1| hypothetical protein VIBR0546_04127 [Vibrio brasiliensis LMG 20546] Length = 292 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 79/223 (35%), Gaps = 23/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +RG+LG K G+ + K ++ + + + Sbjct: 92 GIQFMDILIMGLIAFVIFKLMRGMLGSKQGSMNKNRQQPAFGGSAPKFEQPNVHNFEQPQ 151 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + FD F+N +R Y + ++ ++ I Sbjct: 152 SGAQGGGFGFGAQS--------DIPHNYPPGFDQTAFINGSREHYRILQGAWNHNQLETI 203 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E+ V +++D + + + + V D +I+ A + + ++++ G++ Sbjct: 204 EEYVSPSLFEDLKSERAKLEGE----QHTDVMYVDAEIVRADYDASKAQLSLQFSGRYRD 259 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + + E DIW R++ N W+++ + Sbjct: 260 S--------VEGIEENIE---DIWHLERDLTTPNAPWLIVGIQ 291 >gi|86148689|ref|ZP_01066968.1| hypothetical protein MED222_20209 [Vibrio sp. MED222] gi|218710150|ref|YP_002417771.1| hypothetical protein VS_2180 [Vibrio splendidus LGP32] gi|85833536|gb|EAQ51715.1| hypothetical protein MED222_20209 [Vibrio sp. MED222] gi|218323169|emb|CAV19346.1| hypothetical protein VS_2180 [Vibrio splendidus LGP32] Length = 307 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 86/231 (37%), Gaps = 25/231 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGN--------EKPFSGFFSGKYVFSKRDERG 58 IL+ I F F LRG+LG K G+ ++P G + + Sbjct: 93 GIQFMDILIMGLIAFLAFKFLRGMLGAKQGSMNQQNARGQQPAFGGMGQNKFEQPKQQPN 152 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + + + + ++ G + FD F+N +R Y + ++ Sbjct: 153 VHNFEQAQPQSQ--PHSQNSAGGFGFGAQSDVPHNYPPGFDQAAFINGSREHYRTLQGAW 210 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 +++ IE+ V +++D + + + + V D +I+ A + + +++ Sbjct: 211 NHNELNTIEEYVSPSLFEDLKAERNKLDGD----QHTDVMYVDAEIVRADHDGSKAQLSL 266 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + G++ D + + + DIW R++ N W+++ + Sbjct: 267 QFSGRY----RDTADGIEE-------DITDIWHLERDLTTQNAPWLIVGIQ 306 >gi|153002504|ref|YP_001368185.1| import inner membrane translocase subunit Tim44 [Shewanella baltica OS185] gi|151367122|gb|ABS10122.1| import inner membrane translocase subunit Tim44 [Shewanella baltica OS185] Length = 287 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 87/231 (37%), Gaps = 27/231 (11%) Query: 3 FIKMDSGDF---LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59 F+ + IL+ + F +F +R V+ KTG ++ + +G+ Sbjct: 81 FMGGGFENIQIMDILIIGLLAFVIFKIVRTVMASKTGAQQRPAYAGAGQPNP-------- 132 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + + + +IN + FD FL AR+ Y+ + ++ Sbjct: 133 -NMQRQQTEQTGFAINTNSGSNGFGQATSAVPFDLPAGFDLPGFLEGARSHYKTLQLAWN 191 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 E + I++ V +Y + ++ + + + V D +++ A+ N ++++ Sbjct: 192 ENDLSKIQEYVSIDLYNELSNQRRELVGD----QHTEVMFLDAELVRATHNANLAEVSVK 247 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G++ + E +IW RN+ +N W+++ + Sbjct: 248 FSGRYRDT--------VEGVEEDIK---EIWHLERNVTQANSPWLIVGIEQ 287 >gi|315497202|ref|YP_004086006.1| import inner membrane translocase subunit tim44 [Asticcacaulis excentricus CB 48] gi|315415214|gb|ADU11855.1| import inner membrane translocase subunit Tim44 [Asticcacaulis excentricus CB 48] Length = 207 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 82/222 (36%), Gaps = 20/222 (9%) Query: 12 LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71 +L+ A I V QL VLG++ G D+ + + N Sbjct: 4 DLLILALIAVVVLFQLYNVLGRRVGF--------------KAEDKPVVPKTEDSEGPFNR 49 Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 + + S F+ +F+ +AR +YE IV +F G++ ++ + Sbjct: 50 PGQEPKAQPERLRMPNLDALKSRDAHFNEINFVEKAREAYEQIVLAFNRGEIEGLKDRLS 109 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 VY F ++ R + + S V + ++++ + +R + + + D Sbjct: 110 ESVYGVFAKAIEARGEQKA-MTVSFVESPKTDLDQIDLKDDRASVRVRFLSELLYEMADP 168 Query: 192 DNLLISSDPEIF-GKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D +P+ + + WTF +N+ W+L + + Sbjct: 169 DG----GEPKKAHRRTAEFWTFQKNLKSPTNPWILSRVEAAK 206 >gi|146294690|ref|YP_001185114.1| import inner membrane translocase subunit Tim44 [Shewanella putrefaciens CN-32] gi|145566380|gb|ABP77315.1| import inner membrane translocase, subunit Tim44 [Shewanella putrefaciens CN-32] gi|319427926|gb|ADV56000.1| import inner membrane translocase subunit Tim44 [Shewanella putrefaciens 200] Length = 291 Score = 110 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 88/231 (38%), Gaps = 23/231 (9%) Query: 3 FIKMDS---GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59 F+ IL+ + F +F +R V+ K G + + +G+ + + ++ Sbjct: 81 FMGEGFENIQFMDILIIGLLAFVLFKIVRTVMASKAGAQPRPAYAGAGQPSPNLQRQQTE 140 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 T +N +S + ++ FD FL AR+ Y+ + ++ Sbjct: 141 QTGFASNATNNANSGSHGVAQ-----AASDVPFNLPAGFDLPSFLEGARSHYKTLQLAWN 195 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 E + I++ V ++ + ++ + + V D +++ A+ N ++++ Sbjct: 196 ENDLSKIQEYVSIELFNELSNQRRELVGE----QHTEVMFLDAELVRATHTANLAEVSVK 251 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G++ + D + ++W RN+ +N W+++ + Sbjct: 252 FSGRYRDTV-----ECVEED------IKEVWHLERNVAQANSPWLIVGIEQ 291 >gi|269965560|ref|ZP_06179674.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269829785|gb|EEZ84020.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 290 Score = 110 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 79/223 (35%), Gaps = 23/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +RG+LG K G+ + SK ++ + + Sbjct: 90 GIQFMDILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNFEQQP 149 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 +N + FD F+N +R Y + ++ ++ I Sbjct: 150 NTNNGGFGGFGAQTDVP--------HNYPPGFDQAAFINGSREHYRILQGAWNHNQLETI 201 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E+ V +++D + + + V D +I+ A + N ++++ G++ Sbjct: 202 EEYVSPSLFEDLKAERAKLDGE----QHTDVMYVDAEIVRADYDANKAQLSLQFSGRYRD 257 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + E DIW R++ N W+++ + Sbjct: 258 T--------VEGVEEEIE---DIWHLERDLTAPNAPWLIVGIQ 289 >gi|323499402|ref|ZP_08104378.1| hypothetical protein VISI1226_21579 [Vibrio sinaloensis DSM 21326] gi|323315587|gb|EGA68622.1| hypothetical protein VISI1226_21579 [Vibrio sinaloensis DSM 21326] Length = 292 Score = 110 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 80/223 (35%), Gaps = 23/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +RG+LG K G+ + + + E+ + + Sbjct: 92 GIQFMDILIIGLIAFLIFKLMRGMLGAKQGSMNQHRQQPAFGGQSAPKFEQPNVHNFEQP 151 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + + + FD F+N +R Y + ++ ++ I Sbjct: 152 QTGSQGGFGFGGQTDVP--------HNYPPGFDHAAFINGSREHYRILQGAWNHNQLETI 203 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E+ V +Y+D + + + V D +I+ A + + ++++ G++ Sbjct: 204 EEYVSPSLYEDLKAERAKLDGE----QHTDVMYVDAEIVRADYDASKAQLSLQFSGRYRD 259 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A + E DIW R++ N W+++ + Sbjct: 260 A--------VEGVEENIE---DIWHLERDLTTPNAPWLIVGIQ 291 >gi|209694565|ref|YP_002262493.1| putative transport protein [Aliivibrio salmonicida LFI1238] gi|208008516|emb|CAQ78689.1| putative transport protein [Aliivibrio salmonicida LFI1238] Length = 316 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 78/224 (34%), Gaps = 16/224 (7%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 I++ A + F +F R + K G+ G S ++ + Sbjct: 109 GIQFMDIIIMAGVAFVLFKLFRMFMASKAGSINQRQGAAYAGPQASHDEKPSFRDNQQYF 168 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + D + + + FD + F+N +R Y + ++ ++ I Sbjct: 169 QGDQAQPQTQTTGGFGSIGSD-EVPHNYPPGFDLQGFINGSREHYRILQGAWNHNQLETI 227 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 ++ V +Y D + + + + V D +++ A ++ ++++ G++ Sbjct: 228 QEYVSISLYNDLVQERANLEGE----QHTDVMFVDAEVVRAEHNASSAQLSLQFSGRYRD 283 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + + E D+W R++ N W++I + Sbjct: 284 S--------VEGLQEDI---TDVWHLERDLTQPNAPWLIIGIQA 316 >gi|28897713|ref|NP_797318.1| hypothetical protein VP0939 [Vibrio parahaemolyticus RIMD 2210633] gi|28805926|dbj|BAC59202.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|328473305|gb|EGF44153.1| hypothetical protein VP10329_21550 [Vibrio parahaemolyticus 10329] Length = 290 Score = 109 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 81/223 (36%), Gaps = 23/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +RG+LG K G+ + SK ++ + + Sbjct: 90 GIQFMDILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNASKFEQPNMQNFEQQP 149 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + T + FD F+N +R Y + ++ ++ I Sbjct: 150 NTN--------AGGFTGFGAQTDVPHNYPPGFDQAAFINGSREHYRILQGAWNHNQLDTI 201 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E+ V +++D + + + + V D +I+ A + N ++++ G++ Sbjct: 202 EEYVSPSLFEDLKAERAKLEGE----QHTDVMYVDAEIVRAEYDANKAQLSLQFSGRYRD 257 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A+ E DIW R++ N W+++ + Sbjct: 258 AA--------EGVEEDIE---DIWHLERDLTVPNAPWLIVGIQ 289 >gi|262394794|ref|YP_003286648.1| hypothetical protein VEA_004023 [Vibrio sp. Ex25] gi|262338388|gb|ACY52183.1| hypothetical protein VEA_004023 [Vibrio sp. Ex25] Length = 290 Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 78/223 (34%), Gaps = 23/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +RG+LG K G+ + SK ++ + + Sbjct: 90 GIQFMDILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNFEQQP 149 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 +N + FD F+N +R Y + ++ ++ I Sbjct: 150 NTNNGGFGGFGAQTDVP--------HNYPPGFDQAAFINGSREHYRILQGAWNHNQLETI 201 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E+ V +++D + + + V D +I+ A N ++++ G++ Sbjct: 202 EEYVSPSLFEDLKAERAKLDGE----QHTDVMYVDAEIVRADYNANKAQLSLQFSGRYRD 257 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + E DIW R++ N W+++ + Sbjct: 258 T--------VEGVEEEIE---DIWHLERDLTVPNAPWLIVGIQ 289 >gi|148265319|ref|YP_001232025.1| import inner membrane translocase, subunit Tim44 [Geobacter uraniireducens Rf4] gi|146398819|gb|ABQ27452.1| import inner membrane translocase, subunit Tim44 [Geobacter uraniireducens Rf4] Length = 318 Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 21/221 (9%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 F ILL A I ++ + V K+ V S G Sbjct: 117 FEILLLAGI-GYLIYRF--VKKKR---------------VDSSYSTYEQGGYQHGNVTPI 158 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 P T ++ M I + FD F + + + I ++ + ++ L+ Sbjct: 159 YGGTESYEPQPTDVDTGMAHIRQMDPSFDESRFNDSVMDIFFKIQGAWMNRDLSSVSGLL 218 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 + + F + + +++ + + + +++I E YIT I + + D Sbjct: 219 TDEMKRIFQEDMDRLLRDKQVNRLENIAVRNVEISEVWQESGQDYITALIYANLLDYTTD 278 Query: 191 -KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++S K + WTF R + N W L + Sbjct: 279 DATGTVVSGSKTEPVKFEEYWTFTRPVG--NNPWRLSAINQ 317 >gi|258621272|ref|ZP_05716306.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|262171047|ref|ZP_06038725.1| hypothetical protein VII_001862 [Vibrio mimicus MB-451] gi|258586660|gb|EEW11375.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|261892123|gb|EEY38109.1| hypothetical protein VII_001862 [Vibrio mimicus MB-451] Length = 290 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 79/223 (35%), Gaps = 24/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +RG+L K G+ + + E+ + + Sbjct: 91 GIQFMDILIMGLIAFVIFKLMRGLLASKQGSMNQSQQQPAYSGMNRTSFEQPNVHNFEQP 150 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + G + FD F+N AR Y + ++ ++ I Sbjct: 151 QS---------MGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 201 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + V +++D + + + + + V D +I+ A + N ++++ G++ Sbjct: 202 REYVSPSLFEDLQAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 257 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A + E D+W R++ N W+++ + Sbjct: 258 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 289 >gi|24375821|ref|NP_719864.1| hypothetical protein SO_4340 [Shewanella oneidensis MR-1] gi|24350775|gb|AAN57308.1|AE015867_7 conserved hypothetical protein [Shewanella oneidensis MR-1] Length = 291 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 82/231 (35%), Gaps = 27/231 (11%) Query: 3 FIKMDS---GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59 F+ IL+ A + F +F +R V+ K + + +G+ Sbjct: 85 FMGEGFENIQFMDILIIALLAFVLFKIVRTVMASKASAQPRPAYAGAGQPNP-------- 136 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 L + + + + + + FD FL AR+ Y+ + ++ Sbjct: 137 -NLQRQQAEQTGFASSANSGSNGFAQAASTVPFHLPAGFDLPGFLEGARSHYKTLQVAWN 195 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 E + I++ V +Y + ++ + + V D +++ A+ N ++++ Sbjct: 196 ENDLSKIQEYVSIELYNELSNQRRELVGE----QHTEVMFLDAELVRATHNANLAEVSVK 251 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G++ + E +IW RN+ +N W+++ + Sbjct: 252 FSGRYRDT--------VEGVEEDIK---EIWHLERNLTQANAPWLIVGIEQ 291 >gi|312882412|ref|ZP_07742153.1| hypothetical protein VIBC2010_18049 [Vibrio caribbenthicus ATCC BAA-2122] gi|309369812|gb|EFP97323.1| hypothetical protein VIBC2010_18049 [Vibrio caribbenthicus ATCC BAA-2122] Length = 281 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 80/223 (35%), Gaps = 21/223 (9%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +R +LG K G+ + SK ++ + + + Sbjct: 79 GVQFMDILIMGIIAFVIFKLVRAMLGAKQGSLNQHRQQPAFGGSASKFEQPNVNQFKEQQ 138 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + + G + + FD F+N +R Y + ++ ++ I Sbjct: 139 QPTTNQT------GGFGFSAQSDVPHNYPPGFDNAAFVNGSREHYRLLQGAWNHNQLDTI 192 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E+ V ++ D + + + V D +I+ A + + ++++ G++ Sbjct: 193 EEYVSQSLFDDLKTERAKLSGE----QHTDVMFVDAEIVRADYDASKAQLSLQFSGRYRD 248 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + E DIW R++ N W+++ + Sbjct: 249 T--------VEGIEEDI---TDIWHLERDLTTPNAPWLIVGIQ 280 >gi|304412224|ref|ZP_07393833.1| import inner membrane translocase subunit Tim44 [Shewanella baltica OS183] gi|307306968|ref|ZP_07586708.1| import inner membrane translocase subunit Tim44 [Shewanella baltica BA175] gi|304349490|gb|EFM13899.1| import inner membrane translocase subunit Tim44 [Shewanella baltica OS183] gi|306910546|gb|EFN40976.1| import inner membrane translocase subunit Tim44 [Shewanella baltica BA175] Length = 287 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 85/231 (36%), Gaps = 27/231 (11%) Query: 3 FIKMDSGDF---LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59 F+ + IL+ + F +F +R V+ K G ++ + +G+ Sbjct: 81 FMGGGFENIQIMDILIIGLLAFVLFKIVRTVMASKAGAQQRPAYAGAGQPNP-------- 132 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + + + + N + FD FL AR+ Y+ + ++ Sbjct: 133 -NMQRQQAEQTGFATNANSGSNGFGQATSAVPFDLPAGFDLPGFLEGARSHYKTLQLAWN 191 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 E + I++ V +Y + ++ + + + V D +++ A+ N ++++ Sbjct: 192 ENDLSKIQEYVSIDLYNELSNQRRELVGD----QHTEVMFLDAELVRATHNANLAEVSVK 247 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G++ + E +IW RN+ +N W+++ + Sbjct: 248 FSGRYRDT--------VEGVEEEIK---EIWHLERNVTQANSPWLIVGIEQ 287 >gi|261210612|ref|ZP_05924905.1| hypothetical protein VCJ_000865 [Vibrio sp. RC341] gi|260840397|gb|EEX66968.1| hypothetical protein VCJ_000865 [Vibrio sp. RC341] Length = 289 Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 77/223 (34%), Gaps = 24/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +RG+L K G+ + + E+ + + Sbjct: 90 GIQFMDILIMGLIAFVIFKLMRGLLASKQGSMNQSQQQPAFGGMNRTPFEQPNVHNFEQP 149 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + G + FD F+N AR Y + ++ ++ I Sbjct: 150 QS---------MGGGFGSAAQSDIPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 200 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + V ++ D + + + + V D +I+ A + N ++++ G++ Sbjct: 201 REYVSPSLFDDLKAERANYEGE----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 256 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A + E D+W R++ N W+++ + Sbjct: 257 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 288 >gi|258626499|ref|ZP_05721339.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258581210|gb|EEW06119.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 290 Score = 108 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 79/223 (35%), Gaps = 24/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +RG+L K G+ + + E+ + + Sbjct: 91 GIQFMDILIMGLIAFVIFKLMRGLLASKQGSMNQSQQQPAYSGMNRTSFEQPNVHNFEQP 150 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + G + FD F+N AR Y + ++ ++ I Sbjct: 151 QS---------MGGGFGSAAQSDVPHNYPVGFDRVAFVNGAREHYRILQGAWNHNQLETI 201 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + V +++D + + + + + V D +I+ A + N ++++ G++ Sbjct: 202 REYVSPSLFEDLQAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 257 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A + E D+W R++ N W+++ + Sbjct: 258 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 289 >gi|320352867|ref|YP_004194206.1| import inner membrane translocase subunit Tim44 [Desulfobulbus propionicus DSM 2032] gi|320121369|gb|ADW16915.1| import inner membrane translocase subunit Tim44 [Desulfobulbus propionicus DSM 2032] Length = 313 Score = 108 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 75/227 (33%), Gaps = 12/227 (5%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 G +L+ + +F++ + +P + SG + Sbjct: 97 GMGILPLLILGGVGYFLYKRFVN---------RPAAPSSSGYQPPPAPNMFQGGGGQFAG 147 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + + + +I + FD K FL A + + I + + + Sbjct: 148 NTVPPVPPIPPIRATNTMEQGLAEIRATDPGFDDKYFLEVASDVFFKIQAGWMRRDLSSY 207 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 L+ ++ ++ + + + K + + ++II A + ++T+ + Sbjct: 208 RHLLGQQLAAEYEQHFARMQELGQINKLESIAVRKVEIIAAGSDNGEDFVTVLFTANLLD 267 Query: 187 ASYD-KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + D K L+ K + WT+ R + + W L ++ E Sbjct: 268 YTVDEKTGALVEGSMTEPIKFAEKWTWARPMRTED--WKLEGIEVVE 312 >gi|163803720|ref|ZP_02197579.1| hypothetical protein 1103602000427_AND4_04363 [Vibrio sp. AND4] gi|159172471|gb|EDP57338.1| hypothetical protein AND4_04363 [Vibrio sp. AND4] Length = 288 Score = 108 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 77/223 (34%), Gaps = 25/223 (11%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +RG+LG K G + SK ++ + + Sbjct: 90 GIQFMDILIMGLIAFVIFKLMRGMLGAKQGTMNQHRQQPAFGGNASKFEQPNMQNFEQQP 149 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + FD F+N +R Y + ++ ++H I Sbjct: 150 NSAGTGGF----------GSKTDIPHNYPPGFDQAAFVNGSREHYRTLQGAWNHNQLHTI 199 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E+ V ++ D + + + V D +I+ A + N ++++ G++ Sbjct: 200 EEYVSPSLFDDLKAERAKLDGE----QHTDVMYVDAEIVRADYDANKAQLSLQFSGRYRD 255 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + + E DIW R++ N W+++ + Sbjct: 256 S--------VEGVEEDIQ---DIWHLERDLTVPNAPWLIVGIQ 287 >gi|217975072|ref|YP_002359823.1| import inner membrane translocase subunit Tim44 [Shewanella baltica OS223] gi|217500207|gb|ACK48400.1| import inner membrane translocase subunit Tim44 [Shewanella baltica OS223] Length = 287 Score = 108 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 85/231 (36%), Gaps = 27/231 (11%) Query: 3 FIKMDSGDF---LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59 F+ + IL+ + F +F +R V+ K G ++ + +G+ Sbjct: 81 FMGGGFENIQIMDILIIGLLAFVLFKIVRTVMASKAGAQQRPAYAGAGQPNP-------- 132 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + + + + N + FD FL AR+ Y+ + ++ Sbjct: 133 -NMQRQQAEQTGFATNANSGSNGFGQAKSAVPFDLPAGFDLPGFLEGARSHYKTLQLAWN 191 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 E + I++ V +Y + ++ + + + V D +++ A+ N ++++ Sbjct: 192 ENDLIKIQEYVSIELYNELSNQRRELVGD----QHTEVMFLDAELVRATHNANLAEVSVK 247 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G++ + E +IW RN+ +N W+++ + Sbjct: 248 FSGRYRDT--------VEGVEEEIK---EIWHLERNVTQANSPWLIVGIEQ 287 >gi|229515345|ref|ZP_04404805.1| hypothetical protein VCB_003002 [Vibrio cholerae TMA 21] gi|229348050|gb|EEO13009.1| hypothetical protein VCB_003002 [Vibrio cholerae TMA 21] Length = 291 Score = 108 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 24/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +R L K G+ + + E+ + + Sbjct: 92 GIQFMDILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQP 151 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + G + FD F+N AR Y + ++ ++ I Sbjct: 152 QS---------VGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 202 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + V +++D + + + + + V D +I+ A + N ++++ G++ Sbjct: 203 REYVSPSLFEDLKAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 258 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A + E D+W R++ N W+++ + Sbjct: 259 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 290 >gi|262166075|ref|ZP_06033812.1| hypothetical protein VMA_002525 [Vibrio mimicus VM223] gi|262025791|gb|EEY44459.1| hypothetical protein VMA_002525 [Vibrio mimicus VM223] Length = 290 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 79/223 (35%), Gaps = 24/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +RG+L K G+ + + E+ + + Sbjct: 91 GIQFMDILIMGLIAFVIFKLMRGLLASKQGSMNQSQQQPAYSGMNRTSFEQPNVHNFEQP 150 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + G + FD F+N AR Y + ++ ++ I Sbjct: 151 QS---------MGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 201 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + V +++D + + + + + V D +I+ A + N ++++ G++ Sbjct: 202 REYVSPSLFEDLQAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 257 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A + E D+W R++ N W+++ + Sbjct: 258 A--------VEGIEENIE---DVWHLERDLTVQNAPWLIVGIQ 289 >gi|260776293|ref|ZP_05885188.1| hypothetical protein VIC_001677 [Vibrio coralliilyticus ATCC BAA-450] gi|260607516|gb|EEX33781.1| hypothetical protein VIC_001677 [Vibrio coralliilyticus ATCC BAA-450] Length = 292 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 80/223 (35%), Gaps = 23/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ + F +F +RG+LG K G+ + K ++ + + Sbjct: 92 GIQFMDILIMGLVAFIIFKLMRGLLGSKQGSMNQQRQQPAFGGSAPKFEQPNVHNFEQQP 151 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + + + FD F+N +R Y + ++ ++ I Sbjct: 152 QSGSQGGFGFGAQS--------DIPHNYPPGFDKVAFINGSREHYRTLQGAWNHNQLDTI 203 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E+ V +++D + + + + V D +I+ A + + ++++ G++ Sbjct: 204 EEYVSPSLFEDLKAERAKLEGE----QHTDVMYVDAEIVRADYDASKAQLSLQFSGRYRD 259 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A + + DIW R++ N W+++ + Sbjct: 260 AV-----------ENVEENIEDIWHLERDLTVPNAPWLIVGIQ 291 >gi|149192059|ref|ZP_01870285.1| hypothetical protein VSAK1_02529 [Vibrio shilonii AK1] gi|148834122|gb|EDL51133.1| hypothetical protein VSAK1_02529 [Vibrio shilonii AK1] Length = 294 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 80/225 (35%), Gaps = 24/225 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGK 64 IL+F I F +F +RG+LG K G N++ F G + + Sbjct: 91 GINFMDILIFGLIAFVIFKFMRGMLGAKQGSMNQQRQQPAFGGNTRNQFEQQPNFQNFEQ 150 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 + + FD FLN AR Y + ++ ++H Sbjct: 151 PQNGGAATGGFGAAGHS-------DVPHNYPPGFDQAAFLNGAREHYRILQGAWNHNELH 203 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 IE+ V + QD + + + + V D +I+ A + N ++++ G++ Sbjct: 204 TIEEYVSPSLLQDLMAERAKLEGE----QHTDVMYVDAEIVRADFDANKAQLSLQFSGRY 259 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A + + DIW R++ N W+++ + Sbjct: 260 RDAV-----------ENVEEDIEDIWHLERDLTVPNAPWLIVGIQ 293 >gi|126176210|ref|YP_001052359.1| import inner membrane translocase subunit Tim44 [Shewanella baltica OS155] gi|125999415|gb|ABN63490.1| import inner membrane translocase, subunit Tim44 [Shewanella baltica OS155] Length = 287 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 84/231 (36%), Gaps = 27/231 (11%) Query: 3 FIKMDSGDF---LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59 F+ + IL+ + F +F +R V+ K G ++ + +G+ Sbjct: 81 FMGGGFENIQIMDILIIGLLAFVLFKIVRTVMASKAGAQQRPAYAGAGQPNP-------- 132 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + + + + N + FD FL AR+ Y+ + ++ Sbjct: 133 -NMQRQQAEQTGFATNANSGSNGFGQATSAVPFDLPAGFDLPGFLEGARSHYKTLQLAWN 191 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 E + I++ V +Y + ++ + + + V D +++ A+ N ++++ Sbjct: 192 ENDLRKIQEYVSIDLYNELSNQRRELVGD----QHTEVMFLDAELVRATHNANLAEVSVK 247 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G++ + E +IW RN+ N W+++ + Sbjct: 248 FSGRYRDT--------VEGVEEDIK---EIWHLERNVTQVNSPWLIVGIEQ 287 >gi|229529012|ref|ZP_04418402.1| hypothetical protein VCG_002105 [Vibrio cholerae 12129(1)] gi|229332786|gb|EEN98272.1| hypothetical protein VCG_002105 [Vibrio cholerae 12129(1)] Length = 291 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 24/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +R L K G+ + + E+ + + Sbjct: 92 GIQFMDILIMGLIAFVIFKLMRAFLASKQGSLNQSQQQPAYSGMNRTPFEQPNVHNFEQP 151 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + G + FD F+N AR Y + ++ ++ I Sbjct: 152 QS---------MGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 202 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + V +++D + + + + + V D +I+ A + N ++++ G++ Sbjct: 203 REYVSPSLFEDLKAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 258 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A + E D+W R++ N W+++ + Sbjct: 259 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 290 >gi|119776251|ref|YP_928991.1| hypothetical protein Sama_3119 [Shewanella amazonensis SB2B] gi|119768751|gb|ABM01322.1| conserved hypothetical protein [Shewanella amazonensis SB2B] Length = 295 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 85/231 (36%), Gaps = 25/231 (10%) Query: 3 FIKMDSGDF---LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59 F+ + I++ A + F +F +R ++ K + + +G+ + + Sbjct: 87 FMGEGFENIQIMDIVIIALLAFVLFKVIRMLMASKAQAQPRPAYSGAGQASTAPGQDL-- 144 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 +++ + L + FD FL AR Y+ + ++ Sbjct: 145 -----YRQQAEPAAFGGLGGNSGFAQPQSTVPFQLPPGFDLAAFLEGARGHYKTLQQAWN 199 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 EG ++ I++ V ++ + + + + + V D +++ A+ ++++ Sbjct: 200 EGDLNKIQEYVSIELFNELSQQRRELEGQ----QHTEVMFLDAELVRATYNNELAEVSVK 255 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G++ A+ E ++W RN+ +N W+++ + Sbjct: 256 FSGRYRDAA--------EGVEEDIK---EVWHLERNLLQANSPWLIVGIQQ 295 >gi|254286893|ref|ZP_04961845.1| hypothetical protein A33_1875 [Vibrio cholerae AM-19226] gi|150423043|gb|EDN14992.1| hypothetical protein A33_1875 [Vibrio cholerae AM-19226] Length = 291 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 24/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +R L K G+ + + E+ + + Sbjct: 92 GIQFMDILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQP 151 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + G + FD F+N AR Y + ++ ++ I Sbjct: 152 QS---------MGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 202 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + V +++D + + + + + V D +I+ A + N ++++ G++ Sbjct: 203 REYVSPSLFEDLKAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 258 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A + E D+W R++ N W+++ + Sbjct: 259 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 290 >gi|15641966|ref|NP_231598.1| hypothetical protein VC1964 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590647|ref|ZP_01677981.1| hypothetical protein VC274080_2004 [Vibrio cholerae 2740-80] gi|121728634|ref|ZP_01681653.1| hypothetical protein VCV52_1929 [Vibrio cholerae V52] gi|147674189|ref|YP_001217491.1| hypothetical protein VC0395_A1550 [Vibrio cholerae O395] gi|153217402|ref|ZP_01951153.1| hypothetical protein A55_2172 [Vibrio cholerae 1587] gi|153801838|ref|ZP_01956424.1| hypothetical protein A51_B2032 [Vibrio cholerae MZO-3] gi|153822436|ref|ZP_01975103.1| hypothetical protein A5E_2262 [Vibrio cholerae B33] gi|229507945|ref|ZP_04397450.1| hypothetical protein VCF_003177 [Vibrio cholerae BX 330286] gi|229511819|ref|ZP_04401298.1| hypothetical protein VCE_003228 [Vibrio cholerae B33] gi|229518956|ref|ZP_04408399.1| hypothetical protein VCC_002983 [Vibrio cholerae RC9] gi|229523980|ref|ZP_04413385.1| hypothetical protein VCA_001559 [Vibrio cholerae bv. albensis VL426] gi|229607490|ref|YP_002878138.1| hypothetical protein VCD_002402 [Vibrio cholerae MJ-1236] gi|254226808|ref|ZP_04920380.1| hypothetical protein VCV51_1323 [Vibrio cholerae V51] gi|254849050|ref|ZP_05238400.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255745285|ref|ZP_05419234.1| hypothetical protein VCH_001631 [Vibrio cholera CIRS 101] gi|262156009|ref|ZP_06029129.1| hypothetical protein VIG_001228 [Vibrio cholerae INDRE 91/1] gi|262167916|ref|ZP_06035616.1| hypothetical protein VIJ_001090 [Vibrio cholerae RC27] gi|297579473|ref|ZP_06941401.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|9656503|gb|AAF95112.1| hypothetical protein VC_1964 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547490|gb|EAX57596.1| hypothetical protein VC274080_2004 [Vibrio cholerae 2740-80] gi|121629097|gb|EAX61542.1| hypothetical protein VCV52_1929 [Vibrio cholerae V52] gi|124113586|gb|EAY32406.1| hypothetical protein A55_2172 [Vibrio cholerae 1587] gi|124122610|gb|EAY41353.1| hypothetical protein A51_B2032 [Vibrio cholerae MZO-3] gi|125620655|gb|EAZ49017.1| hypothetical protein VCV51_1323 [Vibrio cholerae V51] gi|126520012|gb|EAZ77235.1| hypothetical protein A5E_2262 [Vibrio cholerae B33] gi|146316072|gb|ABQ20611.1| hypothetical protein VC0395_A1550 [Vibrio cholerae O395] gi|227013861|gb|ACP10071.1| conserved hypothetical protein [Vibrio cholerae O395] gi|229337561|gb|EEO02578.1| hypothetical protein VCA_001559 [Vibrio cholerae bv. albensis VL426] gi|229343645|gb|EEO08620.1| hypothetical protein VCC_002983 [Vibrio cholerae RC9] gi|229351784|gb|EEO16725.1| hypothetical protein VCE_003228 [Vibrio cholerae B33] gi|229355450|gb|EEO20371.1| hypothetical protein VCF_003177 [Vibrio cholerae BX 330286] gi|229370145|gb|ACQ60568.1| hypothetical protein VCD_002402 [Vibrio cholerae MJ-1236] gi|254844755|gb|EET23169.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255737115|gb|EET92511.1| hypothetical protein VCH_001631 [Vibrio cholera CIRS 101] gi|262023643|gb|EEY42344.1| hypothetical protein VIJ_001090 [Vibrio cholerae RC27] gi|262030187|gb|EEY48831.1| hypothetical protein VIG_001228 [Vibrio cholerae INDRE 91/1] gi|297537067|gb|EFH75900.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 291 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 24/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +R L K G+ + + E+ + + Sbjct: 92 GIQFMDILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQP 151 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + G + FD F+N AR Y + ++ ++ I Sbjct: 152 QS---------MGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 202 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + V +++D + + + + + V D +I+ A + N ++++ G++ Sbjct: 203 REYVSPSLFEDLKAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 258 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A + E D+W R++ N W+++ + Sbjct: 259 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 290 >gi|84387756|ref|ZP_00990772.1| hypothetical protein V12B01_05945 [Vibrio splendidus 12B01] gi|84377439|gb|EAP94306.1| hypothetical protein V12B01_05945 [Vibrio splendidus 12B01] Length = 302 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 82/225 (36%), Gaps = 17/225 (7%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGK 64 IL+ I F F LRG+LG K G N++ G + Sbjct: 92 GIQFMDILIMGLIAFLAFKFLRGMLGAKQGSMNQQNARGQQPAFGGMGQNKFEQPKQQPN 151 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 + ++ G + FD F+N +R Y + ++ +++ Sbjct: 152 VHNFEQAQPQSQGAAGGFGFGAQSDVPHNYPPGFDQAAFINGSREHYRTLQGAWNHNELN 211 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 IE+ V +++D + + + + V D +I+ A + + ++++ G++ Sbjct: 212 TIEEYVSPSLFEDLKAERNKLDGD----QHTDVMYVDAEIVRADHDGSKAQLSLQFSGRY 267 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 D + + + DIW R++ +N W+++ + Sbjct: 268 ----RDTADGVEE-------DITDIWHLERDLTTNNAPWLIVGIQ 301 >gi|327484501|gb|AEA78908.1| hypothetical protein VCLMA_A1705 [Vibrio cholerae LMA3894-4] Length = 291 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 76/223 (34%), Gaps = 24/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +R L K G+ + + E+ + + Sbjct: 92 GIQFMDILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQP 151 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + G + FD F+N AR Y + ++ ++ I Sbjct: 152 QS---------MGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 202 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + V +++D + + ++ + D +I+ A + N ++++ G++ Sbjct: 203 REYVSPSLFEDLKAERANYEGDQHTNVMYV----DAEIVRADYDANRAQLSLQFSGRYRD 258 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A + E D+W R++ N W+++ + Sbjct: 259 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 290 >gi|229521878|ref|ZP_04411295.1| hypothetical protein VIF_002420 [Vibrio cholerae TM 11079-80] gi|229340803|gb|EEO05808.1| hypothetical protein VIF_002420 [Vibrio cholerae TM 11079-80] Length = 291 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 24/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +R L K G+ + + E+ + + Sbjct: 92 GIQFMDILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQP 151 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + G + FD F+N AR Y + ++ ++ I Sbjct: 152 QS---------MGGGFGSAAQSDVPHNYPVGFDRVAFVNGAREHYRILQGAWNHNQLETI 202 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + V +++D + + + + + V D +I+ A + N ++++ G++ Sbjct: 203 REYVSPSLFEDLKAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 258 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A + E D+W R++ N W+++ + Sbjct: 259 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 290 >gi|30250392|ref|NP_842462.1| hypothetical protein NE2471 [Nitrosomonas europaea ATCC 19718] gi|30181187|emb|CAD86383.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718] Length = 304 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 69/226 (30%), Gaps = 22/226 (9%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I +F +R + G G + +SG Sbjct: 97 GINMMDILVLVGIAAAIFFIIRMMRGSAGGRQTQRPMQYSGAGAGGMGGVPFPNRDTSAP 156 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + + DFD + FL +A+ S+ A+ + G + I Sbjct: 157 AGGASSGYDRQSTSTDA--------PDIPADFDVESFLKQAKRSFIALQLAHDAGDLEEI 208 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 ++ + + ++ R + + V D +++ + + N ++R Sbjct: 209 RAYTTPDLFAEISKQVAER---GNMAQQTDVIFVDAALLDVTNQGNHAIASVRF------ 259 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 L + +IW +++ S+ W+L + + Sbjct: 260 -----TGELRDTPNAQPEPFDEIWHVEKDLAASDSGWLLAGIQQAD 300 >gi|262404319|ref|ZP_06080874.1| hypothetical protein VOA_002310 [Vibrio sp. RC586] gi|262349351|gb|EEY98489.1| hypothetical protein VOA_002310 [Vibrio sp. RC586] Length = 290 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 78/223 (34%), Gaps = 24/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +RG+L K G+ + + E+ + + Sbjct: 91 GIQFMDILIMGLIAFVIFKLMRGLLASKQGSMNHSQQQPAYSGMNRTSFEQPNVHNFEQP 150 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + G + FD F+N AR Y + ++ ++ I Sbjct: 151 QS---------MGGGFGSTAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 201 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + V +++D + + + + V D +I+ A + N ++++ G++ Sbjct: 202 REYVSPSLFEDLKAERANYAGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 257 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A + E D+W R++ N W+++ + Sbjct: 258 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 289 >gi|160877221|ref|YP_001556537.1| import inner membrane translocase subunit Tim44 [Shewanella baltica OS195] gi|160862743|gb|ABX51277.1| import inner membrane translocase subunit Tim44 [Shewanella baltica OS195] gi|315269425|gb|ADT96278.1| import inner membrane translocase subunit Tim44 [Shewanella baltica OS678] Length = 287 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 85/231 (36%), Gaps = 27/231 (11%) Query: 3 FIKMDSGDF---LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59 F+ + IL+ + F +F +R V+ K G ++ + +G+ Sbjct: 81 FMGGGFENIQIMDILIIGLLAFVLFKIVRTVMASKAGAQQRPAYAGAGQPNP-------- 132 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + + + + N + FD FL AR+ Y+ + ++ Sbjct: 133 -NMQRQQTEQTGFATNTNSGSNGFGQATSAVPFDLPAGFDLPSFLEGARSHYKTLQLAWN 191 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 E + I++ V +Y + ++ + + + V D +++ A+ N ++++ Sbjct: 192 ENDLSKIQEYVSIELYNELSNQRRELVGD----QHTEVMFLDAELVRATHNANLAEVSVK 247 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G++ + E +IW RN+ +N W+++ + Sbjct: 248 FSGRYRDT--------VEGVEEDIK---EIWHLERNVTQANSPWLIVGVEQ 287 >gi|148977909|ref|ZP_01814462.1| hypothetical protein VSWAT3_01775 [Vibrionales bacterium SWAT-3] gi|145962855|gb|EDK28127.1| hypothetical protein VSWAT3_01775 [Vibrionales bacterium SWAT-3] Length = 304 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 76/225 (33%), Gaps = 17/225 (7%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGK 64 IL+ I F F LRG+LG K G N++ G + Sbjct: 94 GIQFMDILIMGLIAFLAFKFLRGMLGAKQGSMNQQNARGQQPAFGGMGQNKFEQPTQQPN 153 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 + ++ G + FD F+N +R Y + ++ ++ Sbjct: 154 VHNFEQAQPQSQGTAGGFGFGAQSDVPHNYPPGFDQAAFINGSREHYRTLQGAWNHNELS 213 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 IE+ V +++D S + + + V D +I+ A + + ++++ Sbjct: 214 TIEEYVSPSLFEDLKAERSKLDGD----QHTDVMYVDAEIVRADHDGSKAQLSLQF---- 265 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 S I + DIW R++ N W+++ + Sbjct: 266 -------SGRYRDSAEGIEEDITDIWHLERDLTTDNAPWLIVGIQ 303 >gi|153820281|ref|ZP_01972948.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126509172|gb|EAZ71766.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] Length = 239 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 24/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +R L K G+ + + E+ + + Sbjct: 40 GIQFMDILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQP 99 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + G + FD F+N AR Y + ++ ++ I Sbjct: 100 QS---------MGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 150 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + V +++D + + + + + V D +I+ A + N ++++ G++ Sbjct: 151 REYVSPSLFEDLKAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 206 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A + E D+W R++ N W+++ + Sbjct: 207 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 238 >gi|153826379|ref|ZP_01979046.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|149739857|gb|EDM54048.1| conserved hypothetical protein [Vibrio cholerae MZO-2] Length = 223 Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 24/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +R L K G+ + + E+ + + Sbjct: 24 GIQFMDILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQP 83 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + G + FD F+N AR Y + ++ ++ I Sbjct: 84 QS---------MGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 134 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + V +++D + + + + + V D +I+ A + N ++++ G++ Sbjct: 135 REYVSPSLFEDLKAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 190 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 A + E D+W R++ N W+++ + Sbjct: 191 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 222 >gi|260767913|ref|ZP_05876847.1| hypothetical protein VFA_000962 [Vibrio furnissii CIP 102972] gi|260615943|gb|EEX41128.1| hypothetical protein VFA_000962 [Vibrio furnissii CIP 102972] gi|315179616|gb|ADT86530.1| Tim44-like domain family [Vibrio furnissii NCTC 11218] Length = 291 Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 76/223 (34%), Gaps = 24/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +RG+LG K G+ ++ G + + Sbjct: 92 GIQFMDILIIGLIAFVIFKLMRGLLGAKQGSMNQ---------HQQQQPAFGGMNRNTFE 142 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + + + G + FD F+N AR Y + ++ ++ I Sbjct: 143 QPNVHNFEQPQNSGGFGSQMQSDVPHNYPDGFDRVAFVNGAREHYRILQGAWNHNQLETI 202 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E+ V +++D + + V D +I+ A + N ++++ Sbjct: 203 EEYVSPSLFEDLKAERA----KIDTDPQTDVMYVDAEIVRADYDANKAQLSLQF------ 252 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 ++ + DIW R++ N W+++ + Sbjct: 253 -----SGRYRDPSEDLEENIDDIWHLERDLTTPNAPWLIVGIQ 290 >gi|116749223|ref|YP_845910.1| import inner membrane translocase subunit Tim44 [Syntrophobacter fumaroxidans MPOB] gi|116698287|gb|ABK17475.1| import inner membrane translocase, subunit Tim44 [Syntrophobacter fumaroxidans MPOB] Length = 341 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 66/218 (30%), Gaps = 15/218 (6%) Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73 LL I L L ++ + + ++ Sbjct: 129 LLDLLIIGVGIYFLMKFLKRRREQQADTLLYSDSGMARPQQP------------YYGGGG 176 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 E P + + +++ F+ + F ++ + I + + IE L+ Sbjct: 177 QPEYLPPADDVERGFQELRRFDPGFNEESFKETVQDLFFRIQAGWMNRSLDGIEGLLAPE 236 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD-KD 192 + F + + + K + + ++ EE Y+T+ + + D K Sbjct: 237 MKAFFASEFDRLRRSGRINKLENIAVRKVEPSEVWQEEGKDYVTVLFTANLLDYTVDDKT 296 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ D K + WTF R+I W L + Sbjct: 297 GQVVEGDKLNPVKFQEFWTFCRDIGTQ--RWQLTAINQ 332 >gi|51246964|ref|YP_066848.1| hypothetical protein DP3112 [Desulfotalea psychrophila LSv54] gi|50878001|emb|CAG37841.1| hypothetical membrane protein [Desulfotalea psychrophila LSv54] Length = 274 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 83/217 (38%), Gaps = 13/217 (5%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ A +F+F + + + G Y + G+ D Sbjct: 69 ILILAGGAYFLFRKFK----------QQSKGGKESAYTRPTATPSFGGGMNGGENTDVRP 118 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 F + L++ + I + DF+ + F+ A + + I + + + LV + Sbjct: 119 PPAPAFAGMSDLDEGIDQIKATDQDFEKEHFIQVASDVFFQIQAGWMRRDISSYRHLVGN 178 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD-K 191 ++ +++ + K+ + K + + +++I A + ++T+R + + + D K Sbjct: 179 QLAEEYTSQFAKMKAAGRTNKLESIAVRSIEVIAAGSDGLEDFVTVRFIASLLDYTVDDK 238 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 ++ K + WT+ R++ + NW L Sbjct: 239 TGDIVEGSNTAPVKFEEEWTWARSVKTN--NWKLEGI 273 >gi|99034421|ref|ZP_01314428.1| hypothetical protein Wendoof_01000767 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 198 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 78/176 (44%), Gaps = 3/176 (1%) Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 K+ + G+ + + I+ DF F+ + ++E Sbjct: 13 KKLTNVLDVSRSGEDVVENIEGYIDSNDENSIKVTYKQILKKNKDFSISHFIEGSSIAFE 72 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 I+ F +G + ++ L+D +Y +F + + RK +S +V I KI+ + +N Sbjct: 73 LIIKCFNQGNLSQLKPLLDKDLYDNFAEKIKHRKE---VHESIIVSIVSQKILEIKLVKN 129 Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 V+I + + + I+ + + +IS KV D+W F +N+ S+P+W+L+S Sbjct: 130 AVFIAVYFLSEQINFVKNNEGDIISGSTSTINKVEDVWQFKKNVNSSDPSWLLVSI 185 >gi|114332328|ref|YP_748550.1| import inner membrane translocase, subunit Tim44 [Nitrosomonas eutropha C91] gi|114309342|gb|ABI60585.1| import inner membrane translocase, subunit Tim44 [Nitrosomonas eutropha C91] Length = 304 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 71/225 (31%), Gaps = 20/225 (8%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ A I +F +R + G + +SG Sbjct: 95 GINMMDILVLAGIAAAIFFGIRMMRRSSGGGQAARPMQYSGAGAGHSMGGMPF------P 148 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 ++D + + D + + FD FL A+ S+ + + G + I Sbjct: 149 RQDTATPSGGVASGVGGQSAANTDALDIPAGFDVDSFLKNAKGSFITLQLAHDSGDLEEI 208 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 ++ + + ++ R + + V + +++ + ++N ++R Sbjct: 209 RAFTTPELFAEISKQITER---GNVTQQTDVTHVNAALLDITTQDNHAVASVRF------ 259 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 L + +IW +++ S+ W+L + Sbjct: 260 -----TGELREAPGAQLEPFDEIWHVEKDLVASDSAWLLSGIQQA 299 >gi|118581965|ref|YP_903215.1| import inner membrane translocase, subunit Tim44 [Pelobacter propionicus DSM 2379] gi|118504675|gb|ABL01158.1| import inner membrane translocase, subunit Tim44 [Pelobacter propionicus DSM 2379] Length = 317 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 28/222 (12%), Positives = 70/222 (31%), Gaps = 21/222 (9%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 F I+L A + ++ + + K+ + SG + Sbjct: 116 MFEIILLAGL-GYLIYRF--IKKKRELSLATPSGQGGYQREAV---------------AP 157 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 P + + + + + FD F + + + I ++ + + L Sbjct: 158 VSYGYQAEVPASSDVESGISHVRQMDPTFDESSFNDAVMDIFFRIQGAWMNRDLAPVSSL 217 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + + + F + + + + + + + ++I E Y+T + + Sbjct: 218 LTDEMKRIFQEDVDRLLRDRQVNRLENIAVRKVEITEVWQESGQDYVTALVHANLFDYTT 277 Query: 190 D-KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D ++S K + WTF R++ N W L + Sbjct: 278 DDATGAVVSGSKSEPVKFEEYWTFTRSVG--NNPWRLSAISQ 317 >gi|253701845|ref|YP_003023034.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M21] gi|251776695|gb|ACT19276.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M21] Length = 321 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 74/220 (33%), Gaps = 18/220 (8%) Query: 12 LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71 ILL A I ++ + V K+ +P + + + +I + + + Sbjct: 118 DILLLAGI-GYLIYR--MVKKKR----EPEADLYGQR--------PNVIDIDRYQAGQGT 162 Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 P + + + I + FD F + + + I ++ + + L+ Sbjct: 163 ARPLGNQPAQDEVEEGLSHIRQMDPSFDEARFNDTVMDMFFKIQGAWMNRDLSGVSALLT 222 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD- 190 + + ++ + + + +++I A E +IT + + + D Sbjct: 223 DEMRAAMQGDVDQLLREKRVNRLENIAVRNVEISEAWQESGKDFITALVYANLLDYTTDD 282 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++S K + WTF R + N W L + Sbjct: 283 ATGAVVSGSKTDPVKFEEYWTFTRTVG--NNPWKLSAINQ 320 >gi|260878333|ref|ZP_05890688.1| import inner membrane translocase, subunit Tim44 [Vibrio parahaemolyticus AN-5034] gi|308092753|gb|EFO42448.1| import inner membrane translocase, subunit Tim44 [Vibrio parahaemolyticus AN-5034] Length = 287 Score = 105 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 23/221 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +RG+LG K G+ + SK ++ + + Sbjct: 90 GIQFMDILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNASKFEQPNMQNFEQQP 149 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + T + FD F+N +R Y + ++ ++ I Sbjct: 150 NTN--------AGGFTGFGAQTDVPHNYPPGFDQAAFINGSREHYRILQGAWNHNQLDTI 201 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E+ V +++D + + + + V D +I+ A + N ++++ G++ Sbjct: 202 EEYVSPSLFEDLKAERAKLEGE----QHTDVMYVDAEIVRAEYDANKAQLSLQFSGRYRD 257 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 A+ E DIW R++ N W+++ Sbjct: 258 AA--------EGVEEDIE---DIWHLERDLTVPNAPWLIVG 287 >gi|261314892|ref|ZP_05954089.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M163/99/10] gi|261303918|gb|EEY07415.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M163/99/10] Length = 168 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 4/150 (2%) Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG++TGNEKP + S + + +++L + + + +I+ Sbjct: 19 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 78 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 79 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 138 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165 + F ++ R+ + V+SS VGID I Sbjct: 139 EGFVAAIDEREKRGETVRSSFVGIDKAGIA 168 >gi|262276258|ref|ZP_06054067.1| hypothetical protein VHA_003243 [Grimontia hollisae CIP 101886] gi|262220066|gb|EEY71382.1| hypothetical protein VHA_003243 [Grimontia hollisae CIP 101886] Length = 295 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 74/225 (32%), Gaps = 24/225 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGN-EKPFSGFFSGKYVFSKRDERGIITLGKG 65 L+ A I F +F + ++ K G+ +P ++G K+ G Sbjct: 94 GFQVMDFLIIALIAFVLFKIFKSLMAAKNGSINRPHQQAYAGNPSPQKK--------GYY 145 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 ++ G + +FD F+N AR Y + ++ ++ Sbjct: 146 HEQPQFRESAATSSTGGFGAVNNDVPFNFPPNFDMSAFVNGAREHYRTLQGAWNHNELET 205 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 I++ V +Y D + + + V D +I+ A + ++++ Sbjct: 206 IQEYVTPELYNDLAEERRKLDGE----QHTEVMYVDAEIVRADYDGKRAQLSLQF----- 256 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 I + DIW R++ N W+++ + Sbjct: 257 ------SGRYCDRHEGIEEDITDIWHLERDMTLPNAPWLIVGIQA 295 >gi|254707406|ref|ZP_05169234.1| calcium-binding EF-hand [Brucella pinnipedialis M163/99/10] Length = 164 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 4/150 (2%) Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 +FLQLR VLG++TGNEKP + S + + +++L + + + +I+ Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 ++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165 + F ++ R+ + V+SS VGID I Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGIA 164 >gi|149911555|ref|ZP_01900169.1| hypothetical protein PE36_11757 [Moritella sp. PE36] gi|149805400|gb|EDM65410.1| hypothetical protein PE36_11757 [Moritella sp. PE36] Length = 277 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 78/224 (34%), Gaps = 30/224 (13%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 +++ A + F +F +G++ S++ + + Sbjct: 84 GFQFMDMIIMAGVAFLLFRLFKGMM---------------QAKAASQQGSPQTASGPAFR 128 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 ++ D+ G ++ DFD FL+ AR+ Y+ + ++ E + I Sbjct: 129 QEAQPDATFNTASQGGFAGSSNDVPFNLPADFDLTSFLSGARSHYKTLQKAWNENDLETI 188 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 ++ V +Y + + + + V D++++ A + ++++ Sbjct: 189 QEYVSIELYNELRVQRKELEGE----QHTEVMFLDVELVRAESTASLSQVSVKF------ 238 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + ++ + ++W R++ ++ W++ + Sbjct: 239 -----NGRYRDGHEDVEADINEVWHLERDLTQTDAPWLITGIEQ 277 >gi|85860629|ref|YP_462831.1| transporter [Syntrophus aciditrophicus SB] gi|85723720|gb|ABC78663.1| transporter [Syntrophus aciditrophicus SB] Length = 338 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 71/221 (32%), Gaps = 15/221 (6%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 ILL I + ++ L K+ + + S + R G Sbjct: 130 MDILLIGAILYGIYW----FLKKR----RQAATAMSSPMAYGGMANRDAFNPGSYAPP-- 179 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + G + I + FD + F + + + I ++ + + L+ Sbjct: 180 --IQDIPPASGYEGGGGLDAIRQMDYQFDERRFKDSVLDHFFQIQGAWAGRDMSGVRNLL 237 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 V + T ++ ++ K + + + I A E +IT++ + + D Sbjct: 238 TDEVCKTIQQDAETLRAKKRINKLDNIAVRSVDITEAWQEGGQDFITVKFYANLLDYTID 297 Query: 191 -KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++S K ++ WTF R N W L + Sbjct: 298 EASGEVVSGSRTEPVKFVEFWTFTRPTG--NNPWRLSAVNQ 336 >gi|197117400|ref|YP_002137827.1| transport protein [Geobacter bemidjiensis Bem] gi|197086760|gb|ACH38031.1| transport protein, Tim44-like domain, putative [Geobacter bemidjiensis Bem] Length = 322 Score = 103 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 68/220 (30%), Gaps = 18/220 (8%) Query: 12 LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71 ILL A I + ++ R V K+ +I + + Sbjct: 119 DILLLAGIAYLIY---RMVKKKR------------EPETDVYGQRPNVIDIDHYQVSQGS 163 Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 + + + I + FD F + + + I ++ + + L Sbjct: 164 AQSLGYQQAQDEVEEGLSHIRQMDPSFDEGRFNDAVMDMFFKIQGAWMNRDLSGVSALFT 223 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD- 190 + + +++ + + + +++I A E +IT I + + D Sbjct: 224 DEMRAAMQGDVDQLLRDKRVNRLENIAVRNVEISEAWQESGKDFITALIYANLLDYTTDD 283 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++S K + WTF R + N W L + Sbjct: 284 ATGAVVSGSKADPVKFEEYWTFTRTVG--NNPWKLSAINQ 321 >gi|189236504|ref|XP_975336.2| PREDICTED: similar to mitochondrial import inner membrane translocase subunit tim44 [Tribolium castaneum] Length = 424 Score = 103 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 65/176 (36%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + + D + I T L++ + +I + FD K FL + Sbjct: 239 ESDNPVIRASRLLTDKVSDIMGGLFQKTELSETLTEICKIDPTFDTKKFLKQCETDIIPN 298 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G + ++ + F + + S ++ +D++ ++ + E Sbjct: 299 ILEAMTRGDLEVLKDWCHEGPFNLFAIPIKEAYKKGYKIDSKVLDVDNVDLVMGKVMEQG 358 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q + D + ++ DPE +V +W R+I +P W L+ Sbjct: 359 PVLIISFTSQQMMCVRDPNGNVVEGDPEKVMRVAYVWVLCRDISEPDPRAAWRLLD 414 >gi|270005995|gb|EFA02443.1| hypothetical protein TcasGA2_TC008130 [Tribolium castaneum] Length = 421 Score = 103 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 65/176 (36%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + + D + I T L++ + +I + FD K FL + Sbjct: 236 ESDNPVIRASRLLTDKVSDIMGGLFQKTELSETLTEICKIDPTFDTKKFLKQCETDIIPN 295 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G + ++ + F + + S ++ +D++ ++ + E Sbjct: 296 ILEAMTRGDLEVLKDWCHEGPFNLFAIPIKEAYKKGYKIDSKVLDVDNVDLVMGKVMEQG 355 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q + D + ++ DPE +V +W R+I +P W L+ Sbjct: 356 PVLIISFTSQQMMCVRDPNGNVVEGDPEKVMRVAYVWVLCRDISEPDPRAAWRLLD 411 >gi|186475144|ref|YP_001856614.1| import inner membrane translocase subunit Tim44 [Burkholderia phymatum STM815] gi|184191603|gb|ACC69568.1| import inner membrane translocase subunit Tim44 [Burkholderia phymatum STM815] Length = 331 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 63/229 (27%), Gaps = 25/229 (10%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I L AF+ ++ R +G+K + P S Sbjct: 125 FAGMMANMIVIALIAFVAIWLI---RKFVGRKRNAQTPAYAGGSPTLNAGGTGYS----- 176 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 + + + +V FD + FL A+ + + ++ G Sbjct: 177 QEPRYTAPPTGSYLGPQGNPLTTPDIAATPAVPAGFDSEAFLRNAKVYFVRLQAAWDAGN 236 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + I + + F + S + V D ++ + ++R Sbjct: 237 MDDIREFTTPEM---FAEVRVDLSSRGAEKNQTDVVKLDADLLGVEDRGSEYLASVRFH- 292 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 L+ + +IW + W+L + Sbjct: 293 ----------GLIRETVGGSAEPFEEIWNLSKRTGEG---WLLAGIQQA 328 >gi|222054950|ref|YP_002537312.1| import inner membrane translocase subunit Tim44 [Geobacter sp. FRC-32] gi|221564239|gb|ACM20211.1| import inner membrane translocase subunit Tim44 [Geobacter sp. FRC-32] Length = 321 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 70/221 (31%), Gaps = 20/221 (9%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 F ILL A I ++ + K Y + + + G Sbjct: 119 FEILLLAGI-GYLIYR----------FVKKNRETAPATYGQTGYQGGTVTPISSGS---- 163 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + P L + I + FD + F + + + + ++ + + + Sbjct: 164 --GYEAVQPASDDLTTGLSHIRQMDPSFDEQRFNDGVMDMFFKVQGAWMNRDLSPVNGIF 221 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 + + + + + + + + + +++I E +IT +I + + D Sbjct: 222 TDEMRRILQEDVERLLRDRQVNRLENIAVRNVEIAEVWQESGQDFITAQIYANLLDYTTD 281 Query: 191 KD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++S K + WTF R + N W L + Sbjct: 282 DTTGAVVSGSKTDPVKFEEYWTFTRPVG--NNQWRLSAINQ 320 >gi|148262974|ref|YP_001229680.1| import inner membrane translocase, subunit Tim44 [Geobacter uraniireducens Rf4] gi|146396474|gb|ABQ25107.1| import inner membrane translocase, subunit Tim44 [Geobacter uraniireducens Rf4] Length = 314 Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 70/221 (31%), Gaps = 21/221 (9%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 F ILL A I ++ + V K+ N G Sbjct: 113 FEILLLAGI-GYLIYRF--VKKKREAN---------------AAYSSYGGAYQGGTVTPV 154 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 P + + + + FD F + +++ I ++ + + L+ Sbjct: 155 SGGYLGNDPQPDDVAAGLAHVRQMDASFDENRFNDLVMDNFFKIQGAWMNRDLTPVTGLL 214 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 + + F + L +++ + + + +++I E +IT I + + D Sbjct: 215 TDEMKRIFQEDLDRLLRDKQVNRLENIAVRNVEIAEVWQESGQDFITALIYANLLDYTTD 274 Query: 191 -KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +++S K + WT R + N W L + Sbjct: 275 DATGVVVSGSKTEPVKFEEYWTLTRPVG--NNPWRLSAINQ 313 >gi|118579223|ref|YP_900473.1| import inner membrane translocase, subunit Tim44 [Pelobacter propionicus DSM 2379] gi|118501933|gb|ABK98415.1| import inner membrane translocase, subunit Tim44 [Pelobacter propionicus DSM 2379] Length = 314 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 67/217 (30%), Gaps = 20/217 (9%) Query: 15 LFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSI 74 L A I ++ + K + + + G Sbjct: 116 LLAGIA-YLIYR----------FVKKKQPELAPGGYNQAGYQATSVPPPYGAA------Y 158 Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 E G + + I + FD F + A +++ I ++ + + L+ + Sbjct: 159 QESQHDGQGADGGLDHIRQMDPGFDENRFNDMAMDTFFKIQGAWMNRDLAPVSTLLTDEM 218 Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD-KDN 193 + F + L + + + + + I A E YIT I + + D Sbjct: 219 RRVFQEDLDGLLRERRTNRLENIAVRKVDISEAWQESGQDYITTLIYANLLDYTTDDASG 278 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +++S K + WTF R I + W L + Sbjct: 279 IVVSGSKTDPVKFEEYWTFTRPIGGT--PWRLSAIAQ 313 >gi|114775481|ref|ZP_01451049.1| import inner membrane translocase, subunit Tim44 [Mariprofundus ferrooxydans PV-1] gi|114553592|gb|EAU55973.1| import inner membrane translocase, subunit Tim44 [Mariprofundus ferrooxydans PV-1] Length = 289 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 72/229 (31%), Gaps = 31/229 (13%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F ++ I++ + +F LR K++ S + + Sbjct: 91 FEGINF--LDIVMIGAVLALLFFFLR----KRS-----------TPAQPSYAGGQPMHDY 133 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 G+ D D + E + +R D D K F+ A+ Y + ++ G Sbjct: 134 GQSYTTDVEDQVYEENTPRDPVGTALR------PDIDEKHFIPAAKQIYVRMQKAWDNGD 187 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 I K + + + + + V + ++ ++ +E + ++ + Sbjct: 188 TEDIRKFCTAEIAERIASDM-----KPGTENRTEVATLNAELADSWVESDLEWVAVNFTA 242 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + D + + +V ++W F +P W L + Sbjct: 243 MLREQTLDASGTTLD---DQTAEVNEVWIFQHAPKSDDPTWYLAGIQQA 288 >gi|295675463|ref|YP_003603987.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. CCGE1002] gi|295435306|gb|ADG14476.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. CCGE1002] Length = 334 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 66/230 (28%), Gaps = 23/230 (10%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I A I V +R G+K +P + RG + Sbjct: 126 FAGMFANVIVI---ALIAMVVIWLIRRFTGRKRDAAQPAYA-----GTAPSLNTRGTDYI 177 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 + + + SV FD + FL A+ + + ++ G Sbjct: 178 QEPRYTAPPTGSYLEPQGNPLTTPSLGATPSVPAGFDSEAFLRNAKVYFVRLQAAWDVGN 237 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + I + + F + + + V + +++ + ++R Sbjct: 238 IDDIREFTTPEM---FAEVRVDLTARGTQQNQTDVVQLNAELLGVEERATEYFASVRF-- 292 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 L+ + +++W + W+L + E Sbjct: 293 ---------SGLIREAPGAAAEPFVEVWNLTKANRAGEG-WLLAGIQQVE 332 >gi|54309778|ref|YP_130798.1| hypothetical protein PBPRA2617 [Photobacterium profundum SS9] gi|46914216|emb|CAG20996.1| conserved hypothetical protein [Photobacterium profundum SS9] Length = 289 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 75/227 (33%), Gaps = 31/227 (13%) Query: 7 DSGDFLILLFAFITFFVFLQL---RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 IL+F I F +F RG G TG+ + ++G + +++ ++ Sbjct: 91 GIQFMDILIFGLIAFVIFKLFKTMRGAKGTPTGHREAYAGNSPQQQNNTQQRQQAPEMNA 150 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 ++ + +++ ++ +F+ FL+ AR+ Y + ++ ++ Sbjct: 151 APQQSGYASTDSDVP-------------FNLPPNFNMNAFLSGARDHYRILQGAWNHNEL 197 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 I + V + D + + + + +T + Sbjct: 198 DKIREYVSPALLADLTAERAKLEGEQHTEVMYV---------------DTEMVRADFDAN 242 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S + E + D+W R++ N W+++ + Sbjct: 243 LAQLSIQFSGRYKDRNEEHEADITDVWHLERDLRTPNAPWLIVGIQA 289 >gi|157133678|ref|XP_001662961.1| mitochondrial import inner membrane translocase subunit tim44 [Aedes aegypti] gi|108870735|gb|EAT34960.1| mitochondrial import inner membrane translocase subunit tim44 [Aedes aegypti] Length = 433 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 65/182 (35%), Gaps = 3/182 (1%) Query: 52 SKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY 111 + + D + + T L++ + +I + +FD K FL + N Sbjct: 245 QYDESENPVIRASRLLTDKVSDVMGNLFSKTELSETLTEICKIDPNFDQKQFLRDCENDI 304 Query: 112 -EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE 170 I+++ G + ++ Y +S + + S ++ I+++ + + Sbjct: 305 IPNILEAMIRGDLEVLKDWCFESTYNIIATPISQAQKLGYYLDSKVLDIENVDLAMGKVM 364 Query: 171 ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIST 228 E + I Q I D ++ DPE + +W R+ NP W L+ Sbjct: 365 EQGPVLIITFQTQQIMCVRDSKGNVVEGDPEKVMRCNYVWVLCRDPNDLNPKSAWRLMEL 424 Query: 229 KL 230 + Sbjct: 425 QA 426 >gi|157118792|ref|XP_001653263.1| mitochondrial import inner membrane translocase subunit tim44 [Aedes aegypti] gi|108875602|gb|EAT39827.1| mitochondrial import inner membrane translocase subunit tim44 [Aedes aegypti] Length = 433 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 3/182 (1%) Query: 52 SKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY 111 + + D + + T L++ + +I + +FD K FL + N Sbjct: 245 QYDESENPVIRASRLLTDKVSDVMGNLFSKTELSETLTEICKIDPNFDQKQFLRDCENDI 304 Query: 112 -EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE 170 I+++ G + ++ Y +S + + S ++ I+++ + + Sbjct: 305 IPNILEAMIRGDLEVLKDWCFESTYNIIATPISQAQKLGYYLDSKVLDIENVDLAMGKVM 364 Query: 171 ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIST 228 E + I Q I D +I DPE + +W R+ NP W L+ Sbjct: 365 EQGPVLIITFQTQQIMCVRDSKGNVIEGDPEKVMRCNYVWVLCRDPNDLNPKSAWRLMEL 424 Query: 229 KL 230 + Sbjct: 425 QA 426 >gi|90410802|ref|ZP_01218817.1| hypothetical protein P3TCK_27197 [Photobacterium profundum 3TCK] gi|90328433|gb|EAS44731.1| hypothetical protein P3TCK_27197 [Photobacterium profundum 3TCK] Length = 300 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 75/227 (33%), Gaps = 31/227 (13%) Query: 7 DSGDFLILLFAFITFFVFLQL---RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 IL+F I F +F RG G TG+ + ++G + +++ ++ Sbjct: 102 GIQFMDILIFGLIAFVIFKLFKTMRGAKGTPTGHREAYAGNSPQQQNNTQQRQQASEMNA 161 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 ++ + +++ ++ +F+ FL+ AR+ Y + ++ ++ Sbjct: 162 APQQSGYASTDSDVP-------------FNLPPNFNMNAFLSGARDHYRILQGAWNHNEL 208 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 I + V + D + + + + +T + Sbjct: 209 DKIREYVSPALLADLTAERAKLEGEQHTEVMYV---------------DTEMVRADFDAN 253 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S + E + D+W R++ N W+++ + Sbjct: 254 LAQLSIQFSGRYKDRNEEHEADITDVWHLERDLRTPNAPWLIVGIQA 300 >gi|156541363|ref|XP_001599273.1| PREDICTED: similar to mitochondrial import inner membrane translocase subunit tim44, partial [Nasonia vitripennis] Length = 400 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 63/193 (32%), Gaps = 3/193 (1%) Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF 98 K + + + D + I T L++ + +I + F Sbjct: 199 KNPYVNKVLDWKIKYEESENPVVRASRLLTDKVSDIFGGLFQKTELSETLTEICKLDPSF 258 Query: 99 DPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157 D FL + ++++ G + ++ Y L + S ++ Sbjct: 259 DKIKFLKDCETDIIPNVLEAMIRGDLEILKDWCHEAPYNVIAQPLQQAFKLGYRLDSKVL 318 Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217 ID++ ++ + + + I Q I D ++ DPE +V +W R+ Sbjct: 319 DIDNVDLLMGKVMDQGPVLAISFTSQQIMCVRDAKGNVVEGDPEKVMRVNYVWVLCRDPA 378 Query: 218 PSNP--NWVLIST 228 NP W L+ Sbjct: 379 ELNPKSAWRLLEI 391 >gi|170691438|ref|ZP_02882603.1| import inner membrane translocase subunit Tim44 [Burkholderia graminis C4D1M] gi|170143643|gb|EDT11806.1| import inner membrane translocase subunit Tim44 [Burkholderia graminis C4D1M] Length = 332 Score = 99.6 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 63/229 (27%), Gaps = 20/229 (8%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F + +I L A I ++ R LG+K +P + Sbjct: 121 FAGAMANIIVIALLAMIGIWLI---RRFLGRKRDTSQPAYAG--HSPSLNSGATGYTQEP 175 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 + + + SV FD + FL A+ + + ++ G Sbjct: 176 QEPRYTAPPTGSYLEPQGNPLTTPSVNATPSVPAGFDSEAFLRNAKVYFVRLQAAWDVGN 235 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + I + + F + S + V + ++ N + ++R Sbjct: 236 IDDIREFTTPEM---FAEVRVDLSSRGAGTNQTDVVQLNADLLGVEERANEYFASVRF-- 290 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 L+ + +++W + W+L + Sbjct: 291 ---------SGLIREAPGAAAEPFVEVWNLSK-ANRPGEGWLLAGIQQV 329 >gi|328952110|ref|YP_004369444.1| import inner membrane translocase subunit Tim44 [Desulfobacca acetoxidans DSM 11109] gi|328452434|gb|AEB08263.1| import inner membrane translocase subunit Tim44 [Desulfobacca acetoxidans DSM 11109] Length = 333 Score = 99.6 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 73/224 (32%), Gaps = 23/224 (10%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 G F IL+ I ++ +L L ++ + + G Sbjct: 130 GLFEILIIGGI-LYLGYRL---LNRRR----------------QQAHQSGGGGGKTYGAT 169 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 L + I + F+ F ++ + + ++ +V ++ Sbjct: 170 LLYPEPAAPQLPAFDLQTELEPIRRMDPSFNEATFKEMVQDVFFKLQGAWMRQEVSSMRD 229 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L Y + L K+ + K + + ++I A E+ +IT+ + + + Sbjct: 230 LTTPEFYDILDKELQELKAKGQINKLENIAVRQVEISEAWQEQGQDFITVGFLANLLDYT 289 Query: 189 YDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 D N +++ K + WTFVR I N W L + Sbjct: 290 VDAGTNQVLAGSDTEPVKFEEYWTFVRPIG--NGPWKLTAITQP 331 >gi|209521830|ref|ZP_03270508.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. H160] gi|209497734|gb|EDZ97911.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. H160] Length = 333 Score = 99.2 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 64/230 (27%), Gaps = 23/230 (10%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I A I V +R G+K +P + + Sbjct: 125 FAGMLANVIVI---ALIAIVVIWLIRRFTGRKRDATQP-----DYAGTAPSLNANSTGYM 176 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 + + + SV FD + FL A+ + + ++ G Sbjct: 177 QEPRYTAPPTGAYLEPQGNPLTTPSIGAPPSVPAGFDSEAFLRNAKVYFVRLQAAWDAGN 236 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 V I + + F + S + V + +++ N + ++R Sbjct: 237 VEDIREFTTPEM---FAEVRVDLASRGTQPNQTDVVQLNAELLGVEERANESFASVRF-- 291 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 L+ +++W R W+L + E Sbjct: 292 ---------SGLIREEPGAAAEPFVEVWNLSRANRAGEG-WLLAGIQQVE 331 >gi|156973734|ref|YP_001444641.1| hypothetical protein VIBHAR_01439 [Vibrio harveyi ATCC BAA-1116] gi|156525328|gb|ABU70414.1| hypothetical protein VIBHAR_01439 [Vibrio harveyi ATCC BAA-1116] Length = 290 Score = 99.2 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 78/223 (34%), Gaps = 23/223 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +RG+LG K G+ + SK ++ + + Sbjct: 90 GIQFMDILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNFEQQP 149 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + + FD F+N +R Y + ++ ++H I Sbjct: 150 NTN--------AGGFGGFGSQTDIPHNYPPGFDQAAFINGSREHYRILQGAWNHNQLHTI 201 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E+ V +++D + + + V D +I+ A + + ++++ Sbjct: 202 EEYVSPSLFEDLKAERAKLDGE----QHTDVMYVDAEIVRADYDASKAQLSLQF------ 251 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 ++ I + DIW R++ N W+++ + Sbjct: 252 -----SGRYRDAEEGIEEDIEDIWHLERDLTVPNAPWLIVGIQ 289 >gi|330446574|ref|ZP_08310226.1| tim44-like domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490765|dbj|GAA04723.1| tim44-like domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 290 Score = 99.2 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 81/227 (35%), Gaps = 30/227 (13%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVL---GKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 IL+ I F +F + + G G+ + ++G + ++ R Sbjct: 91 GIQFMDILIIGVIAFVLFKLFKAMRANKGTPMGHRESYAGNSPQQPQQPQQQYRQAAGAQ 150 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 + +S + P + +F+ FL+ +R+ Y I ++ ++ Sbjct: 151 SQPQNGGFESTDSDVPFN------------LPPNFNMNAFLSGSRDHYRIIQGAWNHNEL 198 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 I + V ++ D + + + V D +++ A + NT ++I+ G+ Sbjct: 199 EKIREYVSPALFADLEAERAKLSGE----QHTEVMYVDAELVRADYDANTAQLSIKFSGR 254 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + + + E D+W R++ N W+++ + Sbjct: 255 YKDS--------VEGVEEDI---TDVWHLERDLKTPNAPWLIVGIQA 290 >gi|256113826|ref|ZP_05454619.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 3 str. Ether] gi|265995175|ref|ZP_06107732.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 3 str. Ether] gi|262766288|gb|EEZ12077.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 3 str. Ether] Length = 342 Score = 98.8 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 64/225 (28%), Gaps = 10/225 (4%) Query: 10 DFLILL-FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 F ++L A I V +R ++ +G + + + + Sbjct: 126 MFGLILQVAVIALIVMFVMRMFANRRQ-TAAAGAGHAGAQPFGASQPFGSAKSASGQGSF 184 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 F V+ D D F I + A+ K Sbjct: 185 SGRTPSVNPFETKQAAAPVVEDEPMDVGQEDLDRF----EQMLVDIQGGYGREDYAALRK 240 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L + L S K + V + + A E N Y T+ + I Sbjct: 241 LTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAIDVM 300 Query: 189 YDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D+ ++ +P + +++WTF R W L + + E Sbjct: 301 VDRTSGAVVEGNPNEPVESVELWTFTR---TDGGAWQLAAIQGTE 342 >gi|82702119|ref|YP_411685.1| import inner membrane translocase, subunit Tim44 [Nitrosospira multiformis ATCC 25196] gi|82410184|gb|ABB74293.1| import inner membrane translocase, subunit Tim44 [Nitrosospira multiformis ATCC 25196] Length = 295 Score = 98.8 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 73/225 (32%), Gaps = 22/225 (9%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 +L+ A + +F +R + + + + + + T G Sbjct: 92 GINMMDVLMLAALIGGIFFVMRMLRKPRQEHSARPMQYSGMQGTSTDHGVTPGATAATGS 151 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + + + P+ N + DF + FL A+ S+ + + ++ I Sbjct: 152 APETTPRASAVAPVSGTGN--------IPADFQVEPFLRNAKTSFIRLQAANDARDLNDI 203 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + +Y + + ++ R + + V + +++ E++ ++R Sbjct: 204 REYTTPEMYAEISMQINER---GNEPQRTDVLAINAQLLEVVTEKDMAIASVRF------ 254 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + L S +IW +++ + W+L + Sbjct: 255 -----NGQLRESPQSTPEAFDEIWHVQKDLKDPDAVWLLAGIQQV 294 >gi|241834608|ref|XP_002415012.1| mitochondrial import inner membrane translocase, subunit TIM44, putative [Ixodes scapularis] gi|215509224|gb|EEC18677.1| mitochondrial import inner membrane translocase, subunit TIM44, putative [Ixodes scapularis] Length = 415 Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 26/193 (13%), Positives = 60/193 (31%), Gaps = 3/193 (1%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 E + + D + I T L++V+ +I + Sbjct: 213 ENNPYVHKFFDLKTQYDESDNPLVRASRTLTDKVSDIFGGLFQKTELSEVLTEICKMDPA 272 Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD +FL + ++++ G + + + + + S + Sbjct: 273 FDKNEFLRQCETDIIPNVLEAIVRGDLEILRDWCHDAPFNVLSTPIKQAAQLGYRFDSKV 332 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 + + ++ + I E + I Q I + ++ DPE ++ W R+ Sbjct: 333 LDVTNVDLAMGKIMEQGPVLIITFQSQQIMVVRNAKGDVVEGDPEKIMRMHYAWVLCRDQ 392 Query: 217 PPSNP--NWVLIS 227 +P W L+ Sbjct: 393 NELDPRAAWKLMD 405 >gi|239832154|ref|ZP_04680483.1| import inner membrane translocase subunit Tim44 [Ochrobactrum intermedium LMG 3301] gi|239824421|gb|EEQ95989.1| import inner membrane translocase subunit Tim44 [Ochrobactrum intermedium LMG 3301] Length = 345 Score = 98.5 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 66/228 (28%), Gaps = 11/228 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M + + A I FV +R ++ + + K L Sbjct: 128 MFGLILQVAVIALIAMFV---MRMFANRRQPAAAGAGNAGAQPFGAPKSAAPQAGPLAGF 184 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + + E + D D F + ++ A Sbjct: 185 GGRTPSVNPFETKQEAAPAAPAVEDEPMDVGQEDLDRF----EQMLSEVQTAYGREDYAA 240 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + KL + L S+ + V + + A E N Y T+ I I Sbjct: 241 LRKLTTPEAMSYLAEELGEIASSGMRNEVKDVKLLQGDVSEAWREGNAEYATVAIRYSAI 300 Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D++ ++ +P + +++WTF R + W L + + E Sbjct: 301 DVMLDRNTGTVVEGNPNEPVESVELWTFTR---QDSGEWQLAAIQGTE 345 >gi|242279221|ref|YP_002991350.1| import inner membrane translocase subunit Tim44 [Desulfovibrio salexigens DSM 2638] gi|242122115|gb|ACS79811.1| import inner membrane translocase subunit Tim44 [Desulfovibrio salexigens DSM 2638] Length = 312 Score = 98.5 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 73/227 (32%), Gaps = 20/227 (8%) Query: 10 DFLILLFAFITFFVFLQLRGVLGK----KTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 + LI+ F F + R G + GN + + + D Sbjct: 101 NLLIIGLLVYLGFKFFKSRS-RGTDDMYRQGNYQRGPDYSQPNQNNTNADPYARREQTAQ 159 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 D+L S P + V++ FD ++FL+ A+ Y + S+ + Sbjct: 160 NAWDHLSSKPSSQPAAGSAAQQSGPTVNIPAGFDEEEFLDGAKAVYTRLQKSWDSRDMAD 219 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 IE+ + V + + + V + + +++ E ++T+ Sbjct: 220 IEQFATAGVVNEIKQQAKE----DPGPSQTDVLMVNARLLEVKEEGGVNHVTVYYDVLLR 275 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 S +V ++W FV+ + + W L + E Sbjct: 276 E----------DSSQSQPSQVREVWHFVKPVGS-DGMWKLDGIQQLE 311 >gi|23502145|ref|NP_698272.1| hypothetical protein BR1269 [Brucella suis 1330] gi|163843532|ref|YP_001627936.1| import inner membrane translocase subunit Tim44 [Brucella suis ATCC 23445] gi|225852763|ref|YP_002732996.1| import inner membrane translocase subunit Tim44 [Brucella melitensis ATCC 23457] gi|254702005|ref|ZP_05163833.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 5 str. 513] gi|254704546|ref|ZP_05166374.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 3 str. 686] gi|254706558|ref|ZP_05168386.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M163/99/10] gi|254710332|ref|ZP_05172143.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis B2/94] gi|256031826|ref|ZP_05445440.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M292/94/1] gi|256044910|ref|ZP_05447814.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 1 str. Rev.1] gi|256160005|ref|ZP_05457714.1| import inner membrane translocase subunit Tim44 [Brucella ceti M490/95/1] gi|256255226|ref|ZP_05460762.1| import inner membrane translocase subunit Tim44 [Brucella ceti B1/94] gi|256263752|ref|ZP_05466284.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 2 str. 63/9] gi|256369690|ref|YP_003107200.1| Tim44 domain-containing protein [Brucella microti CCM 4915] gi|260168960|ref|ZP_05755771.1| Tim44 domain-containing protein [Brucella sp. F5/99] gi|260565489|ref|ZP_05835973.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 1 str. 16M] gi|261222423|ref|ZP_05936704.1| import inner membrane translocase subunit Tim44 [Brucella ceti B1/94] gi|261314017|ref|ZP_05953214.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M163/99/10] gi|261317896|ref|ZP_05957093.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis B2/94] gi|261752572|ref|ZP_05996281.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 5 str. 513] gi|261755230|ref|ZP_05998939.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 3 str. 686] gi|261758453|ref|ZP_06002162.1| import inner membrane translocase subunit Tim44 [Brucella sp. F5/99] gi|265988925|ref|ZP_06101482.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M292/94/1] gi|265991338|ref|ZP_06103895.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 1 str. Rev.1] gi|265998390|ref|ZP_06110947.1| import inner membrane translocase subunit Tim44 [Brucella ceti M490/95/1] gi|294852604|ref|ZP_06793277.1| import inner membrane translocase subunit Tim44 [Brucella sp. NVSL 07-0026] gi|23348108|gb|AAN30187.1| conserved hypothetical protein [Brucella suis 1330] gi|163674255|gb|ABY38366.1| import inner membrane translocase subunit Tim44 [Brucella suis ATCC 23445] gi|225641128|gb|ACO01042.1| import inner membrane translocase subunit Tim44 [Brucella melitensis ATCC 23457] gi|255999852|gb|ACU48251.1| Tim44 domain-containing protein [Brucella microti CCM 4915] gi|260151557|gb|EEW86651.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 1 str. 16M] gi|260921007|gb|EEX87660.1| import inner membrane translocase subunit Tim44 [Brucella ceti B1/94] gi|261297119|gb|EEY00616.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis B2/94] gi|261303043|gb|EEY06540.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M163/99/10] gi|261738437|gb|EEY26433.1| import inner membrane translocase subunit Tim44 [Brucella sp. F5/99] gi|261742325|gb|EEY30251.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 5 str. 513] gi|261744983|gb|EEY32909.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 3 str. 686] gi|262552858|gb|EEZ08848.1| import inner membrane translocase subunit Tim44 [Brucella ceti M490/95/1] gi|263002122|gb|EEZ14697.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 1 str. Rev.1] gi|263093810|gb|EEZ17815.1| import inner membrane translocase subunit Tim44 [Brucella melitensis bv. 2 str. 63/9] gi|264661122|gb|EEZ31383.1| import inner membrane translocase subunit Tim44 [Brucella pinnipedialis M292/94/1] gi|294821193|gb|EFG38192.1| import inner membrane translocase subunit Tim44 [Brucella sp. NVSL 07-0026] gi|326409290|gb|ADZ66355.1| import inner membrane translocase subunit Tim44 [Brucella melitensis M28] gi|326539001|gb|ADZ87216.1| import inner membrane translocase subunit Tim44 [Brucella melitensis M5-90] Length = 342 Score = 98.5 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 64/228 (28%), Gaps = 12/228 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M + + A I FV +R ++ +G + + + + Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQ-TAAAGAGHAGAQPFGASQPFGSAKSASGQ 181 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 F V+ D D F I + A Sbjct: 182 GSFSGRTPSVNPFETKQAAAPVVEDEPMDVGQEDLDRF----EQMLVDIQGGYGREDYAA 237 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + KL + L S K + V + + A E N Y T+ + I Sbjct: 238 LRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAI 297 Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D+ ++ +P + +++WTF R W L + + E Sbjct: 298 DVMVDRTSGAVVEGNPNEPVESVELWTFTR---TDGGAWQLAAIQGTE 342 >gi|260773108|ref|ZP_05882024.1| hypothetical protein VIB_001575 [Vibrio metschnikovii CIP 69.14] gi|260612247|gb|EEX37450.1| hypothetical protein VIB_001575 [Vibrio metschnikovii CIP 69.14] Length = 289 Score = 98.5 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 75/223 (33%), Gaps = 27/223 (12%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+F I F +F R L K G+ P ++ ++ Sbjct: 93 GIQFMDILIFGLIGFALFKLARHFLAGKQGSLNPRQPAYNTNVHRQSFEQAPEQEFKPAA 152 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 +++ P + FD F+N +R Y + ++ ++ I Sbjct: 153 SSGFGSTMHNDVP------------HNYPPGFDKIAFINGSREHYRILQGAWNHNQLETI 200 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E+ V ++ D + + V D +I+ A ++ ++++ G+ Sbjct: 201 EEYVSQSLFSDLKAEREKLDQQPQ----TEVMYVDAEIVRADYDDRKAQLSLQFTGRCRD 256 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 D +++DIW R++ N W+++ + Sbjct: 257 L----------GDETE-EEILDIWHLERDLTQPNAPWLIVGIQ 288 >gi|254714328|ref|ZP_05176139.1| import inner membrane translocase subunit Tim44 [Brucella ceti M644/93/1] gi|254717227|ref|ZP_05179038.1| import inner membrane translocase subunit Tim44 [Brucella ceti M13/05/1] gi|261219045|ref|ZP_05933326.1| import inner membrane translocase subunit Tim44 [Brucella ceti M13/05/1] gi|261322105|ref|ZP_05961302.1| import inner membrane translocase subunit Tim44 [Brucella ceti M644/93/1] gi|260924134|gb|EEX90702.1| import inner membrane translocase subunit Tim44 [Brucella ceti M13/05/1] gi|261294795|gb|EEX98291.1| import inner membrane translocase subunit Tim44 [Brucella ceti M644/93/1] Length = 342 Score = 98.1 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 64/228 (28%), Gaps = 12/228 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M + + A I FV +R ++ +G + + + + Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQ-TAAAGAGHAGAQPFGASQPFGSAKSASGQ 181 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 F V+ D D F I + A Sbjct: 182 GSFSGRTPSVNPFETKQAAAPVVEDEPMDVGQEDLDRF----EQMLVDIQGGYGREDYAA 237 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + KL + L S K + V + + A E N Y T+ + I Sbjct: 238 LRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAI 297 Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D+ ++ +P + +++WTF R W L + + E Sbjct: 298 DVMVDRTSGAVVEGNPNEPVESVELWTFTR---TDGGAWQLAAIQGTE 342 >gi|254176738|ref|ZP_04883395.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399] gi|254208682|ref|ZP_04915030.1| Tim44 domain protein [Burkholderia mallei JHU] gi|254360262|ref|ZP_04976532.1| Tim44 domain protein [Burkholderia mallei 2002721280] gi|147750558|gb|EDK57627.1| Tim44 domain protein [Burkholderia mallei JHU] gi|148029502|gb|EDK87407.1| Tim44 domain protein [Burkholderia mallei 2002721280] gi|160697779|gb|EDP87749.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399] Length = 339 Score = 98.1 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58 F M + +I L A ++ + G + G + + G + Sbjct: 121 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRPA 180 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + G +V FD + FL A+ + + ++ Sbjct: 181 APGGAFPGSGSAYAGEAQRVFGGAAAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 240 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 EG + I + + F + + V D +++ ++ Sbjct: 241 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 297 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 R L+ + ++W + + W+L + Sbjct: 298 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 336 >gi|269961023|ref|ZP_06175392.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834242|gb|EEZ88332.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 303 Score = 98.1 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 78/223 (34%), Gaps = 22/223 (9%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +RG+LG K G+ + SK ++ + + Sbjct: 102 GIQFMDILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNFEQQP 161 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 N + FD F+N +R Y + ++ ++H I Sbjct: 162 NNTNAGGFGGFGAQT-------DIPHNYPPGFDQAAFINGSREHYRILQGAWNHNQLHTI 214 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E+ V +++D + + + V D +I+ A + N ++++ Sbjct: 215 EEYVSPSLFEDLKAERAKLDGE----QHTDVMYVDAEIVRADYDANKAQLSLQF------ 264 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 ++ I + DIW R++ N W+++ + Sbjct: 265 -----SGRYRDAEEGIEEDIEDIWHLERDLTVPNAPWLIVGIQ 302 >gi|161619220|ref|YP_001593107.1| import inner membrane translocase subunit Tim44 [Brucella canis ATCC 23365] gi|260566211|ref|ZP_05836681.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 4 str. 40] gi|161336031|gb|ABX62336.1| import inner membrane translocase subunit Tim44 [Brucella canis ATCC 23365] gi|260155729|gb|EEW90809.1| import inner membrane translocase subunit Tim44 [Brucella suis bv. 4 str. 40] Length = 342 Score = 98.1 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 64/228 (28%), Gaps = 12/228 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M + + A I FV +R ++ +G + + + + Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQ-TAAAGAGHAGAQPFGASQPFGSAKSASGQ 181 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 F V+ D D F I + A Sbjct: 182 GSFSGRTPSVNPFETKQAAAPVVEDEPMDVGQEDLDRF----EQMLVDIQGGYGREDYAA 237 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + KL + L S K + V + + A E N Y T+ + I Sbjct: 238 LRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAI 297 Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D+ ++ +P + +++WTF R W L + + E Sbjct: 298 DVMVDRTSGAVVEGNPNEPVESVELWTFTR---TDGGAWQLAAIQGTE 342 >gi|306840266|ref|ZP_07473040.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO2] gi|306289793|gb|EFM60975.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO2] Length = 342 Score = 98.1 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 65/228 (28%), Gaps = 12/228 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M + + A I FV +R ++ +G + + + + Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQ-TAAAGAGHAGAQPFGASQPFGSAKSASGQ 181 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 F V+ D D F I ++ A Sbjct: 182 GSFSGRTPSVNPFETKQAAAPVVEDEPMDVGQEDLDRF----EQMLVDIQGAYGREDYAA 237 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + KL + L S K + V + + A E N Y T+ + I Sbjct: 238 LRKLTTPEAMSYLAEELGEIASGGKRNEVKDVRLLQGDVSEAWREGNVEYATVAMRYSAI 297 Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D+ ++ +P + +++WTF R W L + + E Sbjct: 298 DVMVDRTSGAIVEGNPNEPVESVELWTFTR---TDGGAWQLAAIQGTE 342 >gi|254203707|ref|ZP_04910067.1| Tim44 domain protein [Burkholderia mallei FMH] gi|147745219|gb|EDK52299.1| Tim44 domain protein [Burkholderia mallei FMH] Length = 343 Score = 98.1 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58 F M + +I L A ++ + G + G + + G + Sbjct: 125 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRPA 184 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + G +V FD + FL A+ + + ++ Sbjct: 185 APGGAFPGSGSAYAGEAQRVFGGAAAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 244 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 EG + I + + F + + V D +++ ++ Sbjct: 245 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 301 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 R L+ + ++W + + W+L + Sbjct: 302 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 340 >gi|53724992|ref|YP_102025.1| hypothetical protein BMA0187 [Burkholderia mallei ATCC 23344] gi|121599413|ref|YP_994055.1| hypothetical protein BMASAVP1_A2759 [Burkholderia mallei SAVP1] gi|124384532|ref|YP_001028281.1| hypothetical protein BMA10229_A2319 [Burkholderia mallei NCTC 10229] gi|126450327|ref|YP_001081925.1| hypothetical protein BMA10247_2399 [Burkholderia mallei NCTC 10247] gi|238561937|ref|ZP_00441249.2| Tim44 domain protein [Burkholderia mallei GB8 horse 4] gi|251767560|ref|ZP_02267708.2| Tim44 domain protein [Burkholderia mallei PRL-20] gi|52428415|gb|AAU49008.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344] gi|121228223|gb|ABM50741.1| conserved hypothetical protein [Burkholderia mallei SAVP1] gi|124292552|gb|ABN01821.1| conserved hypothetical protein [Burkholderia mallei NCTC 10229] gi|126243197|gb|ABO06290.1| conserved hypothetical protein [Burkholderia mallei NCTC 10247] gi|238523657|gb|EEP87094.1| Tim44 domain protein [Burkholderia mallei GB8 horse 4] gi|243062328|gb|EES44514.1| Tim44 domain protein [Burkholderia mallei PRL-20] Length = 323 Score = 98.1 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58 F M + +I L A ++ + G + G + + G + Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRPA 164 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + G +V FD + FL A+ + + ++ Sbjct: 165 APGGAFPGSGSAYAGEAQRVFGGAAAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 224 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 EG + I + + F + + V D +++ ++ Sbjct: 225 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 281 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 R L+ + ++W + + W+L + Sbjct: 282 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 320 >gi|167585475|ref|ZP_02377863.1| import inner membrane translocase, subunit Tim44 [Burkholderia ubonensis Bu] Length = 334 Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 63/228 (27%), Gaps = 21/228 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M S +I L A I ++ R + ++ NE P + Sbjct: 124 FASMMSNLIVIALLAAIGIWLI---RKFMNRRRSNE-PAYSVGGSASASGNYSQGPSFQA 179 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 G G N + V FD + FL A+ + + ++ +G Sbjct: 180 GNGSSYANEAQSVFGGGTAAAAAGAAAAPLQVPAGFDTEAFLRSAKVYFVRLQAAWDQGN 239 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + I + + F + S + V D +++ ++R Sbjct: 240 LADIREFTTPEM---FAEIKIDLDSRGNEANQTDVVQLDAELVAIEDRGIEQSASVRFH- 295 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 L+ + ++W + W+L + Sbjct: 296 ----------GLIREAANAPAAPFDEVWNLAK---SGGQGWLLAGIQQ 330 >gi|53804400|ref|YP_113719.1| hypothetical protein MCA1256 [Methylococcus capsulatus str. Bath] gi|53758161|gb|AAU92452.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath] Length = 204 Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 70/224 (31%), Gaps = 31/224 (13%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 +LLFA I FF L +L + G++ + ++ Sbjct: 11 NVLDLLLFAGIGFF----LYRLLAAR-GSQPQPAAGAGYYPHSENPGGANPVSGRPAFDT 65 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 D L P + DFD FLN A+ +Y + ++ E + + Sbjct: 66 DLLSRRGGAQPAQS-----------QPADFDTTGFLNGAKAAYRQLQAAWDERDLGTLRA 114 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L +V+ + D L S+ + D +I+ + + + Sbjct: 115 LTTDKVFAELQDQLRASAER----HSTELLRVDAEILEVRDRGDEREVAVLFDVTLR--- 167 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + E V ++W FVR+ P W L + E Sbjct: 168 --------EAPAEEAAVVHEVWHFVRSRSSRQPTWFLDGIQQVE 203 >gi|306844172|ref|ZP_07476765.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO1] gi|306275447|gb|EFM57184.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO1] Length = 342 Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 65/228 (28%), Gaps = 12/228 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M + + A I FV +R ++ +G + + + + Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQ-TAAAGAGHAGAQPFGASQPFGSAKSASGQ 181 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 F V+ D D F I ++ A Sbjct: 182 GSFSGRTPSVNPFETKQAAAPVVEDEPMDVGQEDLDRF----EQMLVDIQGAYGREDYAA 237 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + KL + L S K + V + + A E N Y T+ + I Sbjct: 238 LRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAI 297 Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D+ ++ +P + +++WTF R W L + + E Sbjct: 298 DVMVDRTSGAIVEGNPNEPVESVELWTFTR---TDGGAWQLAAIQGTE 342 >gi|167909581|ref|ZP_02496672.1| Tim44-like domain protein [Burkholderia pseudomallei 112] Length = 314 Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58 F M + +I L A ++ + G + G + + G + + Sbjct: 96 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRQA 155 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + G +V FD + FL A+ + + ++ Sbjct: 156 APGGAFPGSGSAYAGEAQRVFGGAAATTAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 215 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 EG + I + + F + + V D +++ ++ Sbjct: 216 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 272 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 R L+ + ++W + + W+L + Sbjct: 273 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 311 >gi|66519233|ref|XP_395866.2| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-like isoform 1 [Apis mellifera] Length = 456 Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 66/192 (34%), Gaps = 3/192 (1%) Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF 98 K ++ + + + + I T L++ + +I + +F Sbjct: 255 KNPYVNKVLEWKIKYEESDNPVIRASRLLTEKVTDIVGGLFQKTDLSETLTEICKLDPNF 314 Query: 99 DPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157 D FL I+++ G + ++ Y+ L + + + ++ Sbjct: 315 DRIQFLKYCETDIIPNILEAMVRGNLEILKDWCHEAPYKLIAQPLIQVEKLGYQLDNKIL 374 Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217 I+++ +I + E + I Q I D +I DPE +V IW R+ Sbjct: 375 DINNVDLIMGKVMEQGPVLIISFQCQQIMCVRDAKKNVIEGDPEKVMRVNYIWVLCRDPT 434 Query: 218 PSNP--NWVLIS 227 NP W L+ Sbjct: 435 ELNPKAAWRLLD 446 >gi|53718281|ref|YP_107267.1| hypothetical protein BPSL0638 [Burkholderia pseudomallei K96243] gi|52208695|emb|CAH34631.1| putative membrane protein [Burkholderia pseudomallei K96243] Length = 323 Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58 F M + +I L A ++ + G + G + + G + Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRPA 164 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + G +V FD + FL A+ + + ++ Sbjct: 165 APGGAFPGSGSAYAGEAQRVFGGAAAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 224 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 EG + I + + F + + V D +++ ++ Sbjct: 225 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 281 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 R L+ + ++W + + W+L + Sbjct: 282 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 320 >gi|269102148|ref|ZP_06154845.1| hypothetical protein VDA_001568 [Photobacterium damselae subsp. damselae CIP 102761] gi|268162046|gb|EEZ40542.1| hypothetical protein VDA_001568 [Photobacterium damselae subsp. damselae CIP 102761] Length = 272 Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 74/228 (32%), Gaps = 31/228 (13%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F ++ IL+ I F +F L+G+ + K E Sbjct: 76 FDGINF--MDILIIGVIAFVIFKLLKGMR--------------ANKGTPMGHREAYAGNS 119 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 + + + T + ++ +F+ FLN +R Y I +++ + Sbjct: 120 PQQRNQQQAQFRQAANGASTGFSPDSDVPFNLPPNFNLNAFLNGSREHYRTIQEAWNKND 179 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + I + V + D + + + V D +++ A + N ++I+ Sbjct: 180 LAKIREYVSPALLNDLMAERAKLNGE----QHTEVMYVDAEVVRADYDANMAQLSIQF-- 233 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S + + D+W R++ N W+++ + Sbjct: 234 ---------SGRYKDSHEGVEEDITDVWHLERDLRTPNAPWLIVGIQA 272 >gi|254187708|ref|ZP_04894220.1| Tim44-like domain protein [Burkholderia pseudomallei Pasteur 52237] gi|157935388|gb|EDO91058.1| Tim44-like domain protein [Burkholderia pseudomallei Pasteur 52237] Length = 339 Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58 F M + +I L A ++ + G + G + + G + + Sbjct: 121 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRQA 180 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + G +V FD + FL A+ + + ++ Sbjct: 181 APGGAFPGSGSAYAGEAQRVFGGAAATTAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 240 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 EG + I + + F + + V D +++ ++ Sbjct: 241 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 297 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 R L+ + ++W + + W+L + Sbjct: 298 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 336 >gi|170068221|ref|XP_001868783.1| mitochondrial import inner membrane translocase subunit tim44 [Culex quinquefasciatus] gi|167864292|gb|EDS27675.1| mitochondrial import inner membrane translocase subunit tim44 [Culex quinquefasciatus] Length = 431 Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 65/182 (35%), Gaps = 3/182 (1%) Query: 52 SKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY 111 + + D + + T L++ + +I + FD K FL + N Sbjct: 243 QYDESENPMIRASRLLTDKVSDVMGNLFSKTELSETLTEICKIDPSFDQKQFLRDCENDI 302 Query: 112 -EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE 170 I+++ G + ++ Y ++ + + S ++ I+++ + + Sbjct: 303 IPNILEAMIRGDLEILKDWCFESTYNIIATPIAQAQKAGFFLDSKILDIENVDLAMGKVM 362 Query: 171 ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIST 228 E + + Q I D N ++ DPE + +W R+ NP W L+ Sbjct: 363 EQGPVLIVTFQTQQIMCVRDSKNAVVEGDPEKVMRCNYVWVLCRDPNDLNPRSAWRLMEL 422 Query: 229 KL 230 + Sbjct: 423 QA 424 >gi|167917595|ref|ZP_02504686.1| Tim44-like domain protein [Burkholderia pseudomallei BCC215] Length = 267 Score = 97.3 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58 F M + +I L A ++ + G + G + + G + + Sbjct: 49 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRQA 108 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + G +V FD + FL A+ + + ++ Sbjct: 109 APGGAFPGSGSAYAGEAQRVFGGAAATTAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 168 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 EG + I + + F + + V D +++ ++ Sbjct: 169 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 225 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 R L+ + ++W + + W+L + Sbjct: 226 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 264 >gi|195108009|ref|XP_001998585.1| GI24055 [Drosophila mojavensis] gi|193915179|gb|EDW14046.1| GI24055 [Drosophila mojavensis] Length = 452 Score = 97.3 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 70/176 (39%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEA 113 + + D + + T L++ M ++V + +FD K FL++ ++ Sbjct: 267 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPNFDQKQFLHDCEKDIIPN 326 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 ++++ G + ++ Y ++ K + S ++ I+++++ + E Sbjct: 327 VLEAIVRGDLEILKDWCFESTYNIIATPITQAKKAGLYLDSKILDIENIELAMGKVMEQG 386 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ ++ DPE +V +W R+ NP W L+ Sbjct: 387 PVLIITFQAQQIMCVRDQKGQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 442 >gi|326678158|ref|XP_003201001.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-like [Danio rerio] gi|94734038|emb|CAK04039.1| novel protein containing a Tim44-like domain (zgc:110764) [Danio rerio] Length = 452 Score = 97.3 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 68/179 (37%), Gaps = 3/179 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEA 113 + D + I T +++V+ +I+ V FD FL + ++ Sbjct: 267 ESDNAFIRASRAVTDKMTDIIGGLFSKTEMSEVLTEILKVDPSFDKDSFLKQCEKDIIPN 326 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ +G++ ++ Y + K+ S ++ ID++ + + E Sbjct: 327 ILEAMIQGELDVLKDWCYEATYSQLAHPIQQAKAMGLQFHSKILDIDNIDLAMGKMMEQG 386 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN--WVLISTKL 230 + I Q + + ++ DP+ +++ +W R+ NPN W L+ Sbjct: 387 PVLIITFQAQLVMVIRNVKGEVVEGDPDKVLRMMYVWALCRDQEELNPNAAWRLLDISA 445 >gi|237810871|ref|YP_002895322.1| Tim44 domain protein [Burkholderia pseudomallei MSHR346] gi|237504479|gb|ACQ96797.1| Tim44 domain protein [Burkholderia pseudomallei MSHR346] Length = 323 Score = 97.3 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58 F M + +I L A ++ + G + G + + G + + Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRQA 164 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + G +V FD + FL A+ + + ++ Sbjct: 165 APGGAFPGSGSAYAGEAQRVFGGAAAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 224 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 EG + I + + F + + V D +++ ++ Sbjct: 225 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 281 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 R L+ + ++W + + W+L + Sbjct: 282 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 320 >gi|76811089|ref|YP_332258.1| transmembrane protein [Burkholderia pseudomallei 1710b] gi|254261326|ref|ZP_04952380.1| Tim44-like domain protein [Burkholderia pseudomallei 1710a] gi|76580542|gb|ABA50017.1| transmembrane protein [Burkholderia pseudomallei 1710b] gi|254220015|gb|EET09399.1| Tim44-like domain protein [Burkholderia pseudomallei 1710a] Length = 323 Score = 97.3 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58 F M + +I L A ++ + G + G + + G + + Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRQA 164 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + G +V FD + FL A+ + + ++ Sbjct: 165 APGGAFPGSGSAYAGEAQRVFGGAAATTAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 224 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 EG + I + + F + + V D +++ ++ Sbjct: 225 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 281 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 R L+ + ++W + + W+L + Sbjct: 282 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 320 >gi|221211249|ref|ZP_03584228.1| Tim44 domain protein [Burkholderia multivorans CGD1] gi|221168610|gb|EEE01078.1| Tim44 domain protein [Burkholderia multivorans CGD1] Length = 340 Score = 97.3 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 63/233 (27%), Gaps = 25/233 (10%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M S +I L A I ++ R + ++ E +S + Sbjct: 124 FAGMMSNLIVIALLAMIGIWLV---RKFMNRRRPQEPAYSVGSAPSSSGGYAQSPSFQPG 180 Query: 63 GKGKKKDNLDSINELFP-----IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117 + + + V V FD FL A+ S+ + + Sbjct: 181 STSQYSGSGSNYANEAQRVFNGGAPAAGAAAAAPVQVPAGFDTDAFLRSAKVSFVRLQAA 240 Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 + +G + I + + F + S + V D +++ + Sbjct: 241 WDQGNLADIREFTTPEM---FAEIKIDLDSRGNEPNQTDVVQLDAELVALEDRGIEQSAS 297 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +R L+ S ++W + W+L + Sbjct: 298 VRFH-----------GLIRESSNAAAEPFDEVWNLSK---SGGQGWLLAGIQQ 336 >gi|61806584|ref|NP_001013525.1| mitochondrial import inner membrane translocase subunit TIM44 [Danio rerio] gi|60649493|gb|AAH90431.1| Translocase of inner mitochondrial membrane 44 homolog (yeast) [Danio rerio] gi|182891522|gb|AAI64677.1| Timm44 protein [Danio rerio] Length = 452 Score = 96.9 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 68/179 (37%), Gaps = 3/179 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEA 113 + D + I T +++V+ +I+ V FD FL + ++ Sbjct: 267 ESDNAFIRASRAVTDKMTDIIGGLFSKTEMSEVLTEILKVDPTFDKDSFLKQCEKDIIPN 326 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ +G++ ++ Y + K+ S ++ ID++ + + E Sbjct: 327 ILEAMIQGELDVLKDWCYEATYSQLAHPIQQAKAMGLQFHSKILDIDNIDLAMGKMMEQG 386 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN--WVLISTKL 230 + I Q + + ++ DPE +++ +W R+ NPN W L+ Sbjct: 387 PVLIITFQAQLVMVIRNVKGEVVEGDPEKVLRMMYVWALCRDQEELNPNAAWRLLDISA 445 >gi|332029994|gb|EGI69819.1| Mitochondrial import inner membrane translocase subunit TIM44 [Acromyrmex echinatior] Length = 452 Score = 96.9 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 66/200 (33%), Gaps = 6/200 (3%) Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF 98 K + + + D + I T L++ + +I + F Sbjct: 251 KNPYVNKVMDWKTKFDESDNAVLRASRLLTDKVSDIIGGLFQKTELSETLTEICKLDPTF 310 Query: 99 DPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157 FL + + I+++ G + ++ Y + K S ++ Sbjct: 311 CKIQFLKDCETDFIPNILEAMIRGDLEILKDWCHEGPYNIISQPHREVKKLGHYSDSKIL 370 Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217 ID++ ++ + E + I Q I + N +I DP+ +V +W R+ Sbjct: 371 DIDNVDLVMGKMMEQGPVLIISFQSQQIMCVKNSKNEVIEGDPQKVMRVNYVWVLCRDRT 430 Query: 218 PSNP--NWV---LISTKLGE 232 NP W L +T + Sbjct: 431 ELNPKAAWRLLDLSATSSEQ 450 >gi|323524735|ref|YP_004226888.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. CCGE1001] gi|323381737|gb|ADX53828.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. CCGE1001] Length = 330 Score = 96.5 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 63/229 (27%), Gaps = 23/229 (10%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F + +I + A I ++ R +G+K +P S + Sbjct: 122 FAGAMANVIVIAVLAMIGIWLV---RRFMGRKRDASQPAYAGHSP-----SLNSGAAGYT 173 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 + + + SV FD FL A+ + + ++ G Sbjct: 174 QEPRYTAPPTGSYLEPQGNPLTTPSVNATPSVPAGFDSDAFLRNAKVYFVRLQAAWDVGN 233 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + I + + F + S + V + ++ N + ++R Sbjct: 234 IDDIREFTTPEM---FAEVRVDLASRGAEKNQTDVVQLNADLLGVEERANEYFASVRF-- 288 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 L+ + +++W + W+L + Sbjct: 289 ---------SGLIREAPGAAAEPFVEVWNLSK-ANRPGEGWLLAGIQQV 327 >gi|115471689|ref|NP_001059443.1| Os07g0409700 [Oryza sativa Japonica Group] gi|50508458|dbj|BAD30582.1| mitochondrial inner membrane translocating protein-like protein [Oryza sativa Japonica Group] gi|113610979|dbj|BAF21357.1| Os07g0409700 [Oryza sativa Japonica Group] gi|215686787|dbj|BAG89637.1| unnamed protein product [Oryza sativa Japonica Group] gi|215701468|dbj|BAG92892.1| unnamed protein product [Oryza sativa Japonica Group] gi|218199472|gb|EEC81899.1| hypothetical protein OsI_25725 [Oryza sativa Indica Group] gi|222636882|gb|EEE67014.1| hypothetical protein OsJ_23936 [Oryza sativa Japonica Group] Length = 475 Score = 96.5 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 61/224 (27%), Gaps = 20/224 (8%) Query: 28 RGVLGKK-TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFP------- 79 + VLG+K + G + K V I + ++ Sbjct: 246 KSVLGEKWEAFKNKMRGHPAYKRVNEYTKPVVNIGQEVAEDVRERWETSDNPVVQKIQDL 305 Query: 80 -----IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 T R+I F DF + + + ++ ++ +G V ++K V Sbjct: 306 NESIFEETATAVSFREIRQRDPSFSLPDFAGDVQEMIKPVLTAYSKGDVKTLKKYCTKEV 365 Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNL 194 + S ++ I D + + +T I + Q I D++ Sbjct: 366 IERCKGERDAYASQGIFFDHKILHISDADVRETKMMGSTPIIIVGFQTQQIYCVRDREGQ 425 Query: 195 LISSDPEIFGKVIDIWTFV-------RNIPPSNPNWVLISTKLG 231 + + V W P W L + Sbjct: 426 VTEGGQDTIQTVFYAWAMQLMDSDEVPEEESYYPVWRLREIQQV 469 >gi|153009251|ref|YP_001370466.1| import inner membrane translocase subunit Tim44 [Ochrobactrum anthropi ATCC 49188] gi|151561139|gb|ABS14637.1| import inner membrane translocase subunit Tim44 [Ochrobactrum anthropi ATCC 49188] Length = 348 Score = 96.5 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 8/228 (3%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M + + A I FV +R ++ + + +K + Sbjct: 128 MFGLLLQVAVIALIAMFV---MRMFANRRQPAAAGAGNAGAQPFGAAKTAAPQAGSQAGF 184 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + + E + + D +D L+ + ++ A Sbjct: 185 GGRTPSVNPFETKQAAAPVTPAAPAVEDEPMDVGQED-LDRFEQMLAEVQTAYGREDYAA 243 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + KL + L S+ + V + + A E + Y T+ I I Sbjct: 244 LRKLATPEAMSYLAEELGEIASSGMRNEVKDVKLLQGDVSEAWREGDVEYATVAIRYSAI 303 Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D++ ++ +P+ + +++WTF R W+L + + E Sbjct: 304 DVMLDRNTGAVVEGNPDEPVESVELWTFTR---TDGGEWLLAAIQGTE 348 >gi|304311556|ref|YP_003811154.1| hypothetical protein HDN1F_19260 [gamma proteobacterium HdN1] gi|301797289|emb|CBL45509.1| Hypothetical protein HDN1F_19260 [gamma proteobacterium HdN1] Length = 324 Score = 96.2 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 70/235 (29%), Gaps = 25/235 (10%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKT----------GNEKPFSGFFSGKYVFSKRDE 56 IL+FA + F +F LR ++ + P + Sbjct: 105 GLQFLDILIFALLGFVIFKLLRRRQQQRATPAMAGAGGGRFDVPEPANAPQERRTFDLGN 164 Query: 57 RGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116 ++ FD FL AR Y I + Sbjct: 165 PDEKVGAAAASAPAFSPSAAAATDTLGWGNETSVPFNLPAGFDMNSFLTGAREHYRTIQE 224 Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 ++ +G + + + + ++ + +T K + + V D +++ A + Sbjct: 225 AWNKGNLETLREYLAPELFDALSAERATLKGE----QHTEVMFVDAELVRADQNATLAEV 280 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++R G++ + + D+W R++ + W+++ + Sbjct: 281 SLRFSGRYRDQT--------EGVEDAI---TDVWHLERDLSKPDQPWLIVGIEEV 324 >gi|78484559|ref|YP_390484.1| import inner membrane translocase, subunit Tim44 [Thiomicrospira crunogena XCL-2] gi|78362845|gb|ABB40810.1| Hypothetical protein; predicted membrane protein [Thiomicrospira crunogena XCL-2] Length = 306 Score = 96.2 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 67/226 (29%), Gaps = 19/226 (8%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 ILL A + F +F L K+ + + R T + Sbjct: 99 GIQLLDILLIALVAFLLF----SFLKKRQATMMQPAYSRESSPSSFEAASRQTTTQMREN 154 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 D IG+ L++ + FD F+ A+ + I ++ + Sbjct: 155 HAPTYDPYASGSLIGSGLSEQAESMTQKPDWFDEAGFMEAAKGHFVEIQKAWDALDSQEL 214 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + + T ++ + V + + + +I+ + +++R Sbjct: 215 ADYCTPELMAALQSEMDTFQA---GENLTEVEELNAETVEMAIDGDYFIVSVRF------ 265 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + + ++ +IW R + NW + + + Sbjct: 266 -----NGFIREDRNDVAHAFNEIWHI-RRLAAGEGNWQIAGIQQNQ 305 >gi|332374284|gb|AEE62283.1| unknown [Dendroctonus ponderosae] Length = 422 Score = 96.2 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 67/177 (37%), Gaps = 3/177 (1%) Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-E 112 + + + + + T L++ + +I + FD K FL + Sbjct: 236 EESENPVIRASKVLTEKVAYVMGGLFQKTELSETLTEICKIDNSFDTKRFLKQCETDIIP 295 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 I+++ G + ++ Y F+ + ++S ++ ID++ ++ + + Sbjct: 296 NILEAMTRGDLEVLKDWCHEGPYNLFSIPIQEAYKKGFKIESKILDIDNVDLVMGKVMDQ 355 Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q + D + ++ D + +V +W R+I ++P W L+ Sbjct: 356 GPVLIISFTSQQMMVFKDVEGNVVDGDLDKIMRVTHVWVLCRDITETDPRAAWRLLD 412 >gi|307728446|ref|YP_003905670.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. CCGE1003] gi|307582981|gb|ADN56379.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. CCGE1003] Length = 330 Score = 96.2 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 63/229 (27%), Gaps = 23/229 (10%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F + +I L A I ++ R +G+K +P + Sbjct: 122 FAGAMANIIVIALLAMIGIWLI---RRFMGRKRDASQPAYA-----GQSPSLNSGATGYT 173 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 + + + SV FD + FL A+ + + ++ G Sbjct: 174 QEPRYTAPPAGSYLEPQGNPLTTPSVGATPSVPAGFDSEAFLRNAKVYFVRLQAAWDVGN 233 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + I + + F + S + V + ++ N + ++R Sbjct: 234 IEDIREFTTPEM---FAEVRVDLASRGSESNQTDVVQLNADLLGVEERANEYFASVRF-- 288 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 L+ + +++W + W+L + Sbjct: 289 ---------SGLIREALGAPAEPFVEVWNLSKANRAGEG-WLLAGIQQV 327 >gi|254181778|ref|ZP_04888375.1| Tim44-like domain protein [Burkholderia pseudomallei 1655] gi|184212316|gb|EDU09359.1| Tim44-like domain protein [Burkholderia pseudomallei 1655] Length = 323 Score = 96.2 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58 F M + +I L A ++ + G + G + + G + Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPALNRGHDGYSQDAGVQRPA 164 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + G +V FD + FL A+ + + ++ Sbjct: 165 APGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 224 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 EG + I + + F + + V D +++ ++ Sbjct: 225 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 281 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 R L+ + ++W + + W+L + Sbjct: 282 RFH-----------GLIREAQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 320 >gi|217420068|ref|ZP_03451574.1| Tim44 domain protein [Burkholderia pseudomallei 576] gi|217397372|gb|EEC37388.1| Tim44 domain protein [Burkholderia pseudomallei 576] Length = 339 Score = 96.2 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58 F M + +I L A ++ + G + G + + G + + Sbjct: 121 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRQA 180 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + G +V FD + FL A+ + + ++ Sbjct: 181 APGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 240 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 EG + I + + F + + V D +++ ++ Sbjct: 241 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGTNQTDVVQLDAELLAVEDRGGEHLASV 297 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 R L+ + ++W + + W+L + Sbjct: 298 RFH-----------GLIREAQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 336 >gi|206559267|ref|YP_002230028.1| hypothetical protein BCAL0874 [Burkholderia cenocepacia J2315] gi|198035305|emb|CAR51180.1| putative membrane protein [Burkholderia cenocepacia J2315] Length = 343 Score = 95.8 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 69/236 (29%), Gaps = 28/236 (11%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPF--------SGFFSGKYVFSKR 54 F M + +I L A + ++ R + ++ E + SG +S F + Sbjct: 124 FASMMANVIVIALLAMVGIWLI---RKFMNRRRPQEPAYSVGGAASSSGGYSQSPSFQQG 180 Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 + + + + V FD + FL A+ + + Sbjct: 181 NAGSNYAGSGSSYANEAQGVFGGGAAAAGAAAAAAAPLQVPAGFDTEAFLRSAKVYFVRL 240 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ +G + I + + F + S + + V D +++ Sbjct: 241 QAAWDQGNLADIREFTTPEM---FAEIKIDLDSRGNDANQTDVVQLDAELVAIEDRGIEQ 297 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R L+ S ++W + + W+L + Sbjct: 298 SASVRFH-----------GLIRESANTSAAPFDEVWNLSK---SGSQGWLLAGIQQ 339 >gi|307181325|gb|EFN68959.1| Mitochondrial import inner membrane translocase subunit TIM44 [Camponotus floridanus] Length = 452 Score = 95.8 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 65/201 (32%), Gaps = 6/201 (2%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 E + + I D + I T L++ + +I + + Sbjct: 250 ENNPYVNKVMDWKMKYDESDNAIFRASKLLTDKVSDIMGGLFQKTELSETLTEICKLDPN 309 Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 F FL + + I+++ G + ++ Y K S + Sbjct: 310 FSKIQFLKDCETDFIPNILEAMIRGDLEILKDWCHEGPYNLIAQPHKEVKKLGHYSDSKI 369 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 + ID++ ++ + E + I Q I + N +I DP+ +V +W R+ Sbjct: 370 LDIDNVDLMMGKMMEQGPVLIISFQSQQIMCVRNSKNEVIEGDPQKVMRVNYVWVMCRDR 429 Query: 217 PPSN--PNWV---LISTKLGE 232 N W L +T + Sbjct: 430 TELNSKAAWRLLDLSATSSEQ 450 >gi|119115002|ref|XP_310830.3| AGAP000291-PA [Anopheles gambiae str. PEST] gi|116130625|gb|EAA06726.3| AGAP000291-PA [Anopheles gambiae str. PEST] Length = 401 Score = 95.8 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 63/176 (35%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + + D + I T L++ + +I + FD K FL + N Sbjct: 216 ESENPMIRASRLLTDKVSDIMGNLFSKTELSETLTEICKIDPSFDQKQFLRDCENDIIPN 275 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 ++++ G++ + Y ++ + + S ++ I+++ + + E Sbjct: 276 VLEAIVRGELEVLRDWCFESTYNIIATPIAQAQKAGCRLDSKILDIENVDLAMGKVMEQG 335 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + + Q I D +I DPE + +W R+ +P W L+ Sbjct: 336 PVLIVTFQTQQIMCVRDGKGAVIEGDPEKVMRCHHVWVLCRDPNELDPKAAWRLME 391 >gi|226196729|ref|ZP_03792309.1| Tim44 domain protein [Burkholderia pseudomallei Pakistan 9] gi|225931260|gb|EEH27267.1| Tim44 domain protein [Burkholderia pseudomallei Pakistan 9] Length = 323 Score = 95.8 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58 F M + +I L A ++ + G + G + + G + + Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRQA 164 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + G +V FD + FL A+ + + ++ Sbjct: 165 APGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 224 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 EG + I + + F + + V D +++ ++ Sbjct: 225 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGTNQTDVVQLDAELLAVEDRGGEHLASV 281 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 R L+ + ++W + + W+L + Sbjct: 282 RFH-----------GLIREAQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 320 >gi|254247237|ref|ZP_04940558.1| Mitochondrial import inner membrane translocase, subunit Tim44-like protein [Burkholderia cenocepacia PC184] gi|124872013|gb|EAY63729.1| Mitochondrial import inner membrane translocase, subunit Tim44-like protein [Burkholderia cenocepacia PC184] Length = 343 Score = 95.8 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 69/236 (29%), Gaps = 28/236 (11%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPF--------SGFFSGKYVFSKR 54 F M + +I L A + ++ R + ++ E + SG +S F + Sbjct: 124 FASMMANVIVIALLAMVGIWLI---RKFMNRRRPQEPAYSVGGAASSSGGYSQSPSFQQG 180 Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 + + + + V FD + FL A+ + + Sbjct: 181 NTGSNYAGSGSSYANEAQGVFGGGAAAAGAAAAAAAPLQVPAGFDTEAFLRSAKVYFVRL 240 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ +G + I + + F + S + + V D +++ Sbjct: 241 QAAWDQGNLADIREFTTPEM---FAEIKIDLDSRGNDANQTDVVQLDAELVAIEDRGIEQ 297 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R L+ S ++W + + W+L + Sbjct: 298 SASVRFH-----------GLIRESANTSAAPFDEVWNLSK---SGSQGWLLAGIQQ 339 >gi|107023666|ref|YP_621993.1| import inner membrane translocase, subunit Tim44 [Burkholderia cenocepacia AU 1054] gi|116690751|ref|YP_836374.1| import inner membrane translocase, subunit Tim44 [Burkholderia cenocepacia HI2424] gi|105893855|gb|ABF77020.1| import inner membrane translocase, subunit Tim44 [Burkholderia cenocepacia AU 1054] gi|116648840|gb|ABK09481.1| import inner membrane translocase, subunit Tim44 [Burkholderia cenocepacia HI2424] Length = 343 Score = 95.4 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 69/236 (29%), Gaps = 28/236 (11%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPF--------SGFFSGKYVFSKR 54 F M + +I L A + ++ R + ++ E + SG +S F + Sbjct: 124 FASMMANVIVIALLAMVGIWLI---RKFMNRRRPQEPAYSVGGAASSSGGYSQSPSFQQG 180 Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 + + + + V FD + FL A+ + + Sbjct: 181 NTGSNYAGSGSSYANEAQGVFGGGAAAAGAAAAAAAPLQVPAGFDTEAFLRSAKVYFVRL 240 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ +G + I + + F + S + + V D +++ Sbjct: 241 QAAWDQGNLADIREFTTPEM---FAEIKIDLDSRGNDANQTDVVQLDAELVAIEDRGIEQ 297 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R L+ + ++W + + W+L + Sbjct: 298 SASVRFH-----------GLIREAANTSAAPFDEVWNLSK---SGSQGWLLAGIQQ 339 >gi|161523748|ref|YP_001578760.1| import inner membrane translocase subunit Tim44 [Burkholderia multivorans ATCC 17616] gi|189351491|ref|YP_001947119.1| hypothetical protein BMULJ_02693 [Burkholderia multivorans ATCC 17616] gi|221200067|ref|ZP_03573110.1| Tim44 domain protein [Burkholderia multivorans CGD2M] gi|221206780|ref|ZP_03579792.1| Tim44 domain protein [Burkholderia multivorans CGD2] gi|160341177|gb|ABX14263.1| import inner membrane translocase subunit Tim44 [Burkholderia multivorans ATCC 17616] gi|189335513|dbj|BAG44583.1| putative membrane protein [Burkholderia multivorans ATCC 17616] gi|221173435|gb|EEE05870.1| Tim44 domain protein [Burkholderia multivorans CGD2] gi|221180306|gb|EEE12710.1| Tim44 domain protein [Burkholderia multivorans CGD2M] Length = 340 Score = 95.4 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 63/233 (27%), Gaps = 25/233 (10%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M S +I L A I ++ R + ++ E +S + Sbjct: 124 FAGMMSNLIVIALLAMIGIWLV---RKFMNRRRPQEPAYSVGSAPSSSGGYAQSPSFQPG 180 Query: 63 GKGKKKDNLDSINELFP-----IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117 + + + V V FD FL A+ S+ + + Sbjct: 181 STSQYSGSGSNYANEAQRVFNGGAPAAGAAAAAPVQVPAGFDTDAFLRSAKVSFVRLQAA 240 Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 + +G + I + + F + S + V D +++ + Sbjct: 241 WDQGNLADIREFTTPEM---FAEIKIDLDSRGNEPNQTDVVQLDAELVALEDRGIEQSAS 297 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +R L+ S ++W + W+L + Sbjct: 298 VRFH-----------GLIRESANAAAEPFDEVWNLSK---SGGQGWLLAGIQQ 336 >gi|167568817|ref|ZP_02361691.1| Tim44-like domain family protein [Burkholderia oklahomensis C6786] Length = 325 Score = 95.4 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 26/238 (10%), Positives = 65/238 (27%), Gaps = 29/238 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I L A ++ R + ++ ++P + + Sbjct: 105 FASMMANVIVIALLAMAGIWLV---RKFMNRRGAQQQPAYAGGQPSQSRGGYGQDAGVPR 161 Query: 63 GKGKKKDNLDSINELFPIGTRLNKV---------MRDIVSVYTDFDPKDFLNEARNSYEA 113 S + R+ +V FD + FL A+ + Sbjct: 162 QAASNDAFPGSGSAYAGEAQRMFGGAAAATTAAAAAAAPAVPAGFDTEAFLRNAKVYFVR 221 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ EG + I + + F + + V D +++ Sbjct: 222 LQAAWDEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGE 278 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + ++R L+ + ++W + + W+L + Sbjct: 279 HFASVRFH-----------GLIREAQGASAEPFEEVWNLSK---SGSQGWLLAGIQQV 322 >gi|13475963|ref|NP_107533.1| hypothetical protein mll7160 [Mesorhizobium loti MAFF303099] gi|14026723|dbj|BAB53319.1| mll7160 [Mesorhizobium loti MAFF303099] Length = 328 Score = 95.4 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 66/224 (29%), Gaps = 14/224 (6%) Query: 10 DFLILLFAF-ITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 F LL A I + L +R +T + + + +G + Sbjct: 117 MFGFLLQALLIGGAIMLAIRFF---RTQSAQGPAPALAGAGNAQASRFENRAAAQQQTAS 173 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 G L +I D F + I ++F A+ + Sbjct: 174 SFTIPGFGDGSGGASLAADSEEIRLA--QTDLDAF----QQLLTDIQEAFGREDHAALRR 227 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 + ++ L+ + S + + I + E + Y T + + Sbjct: 228 ATTPEMVSYLSEELADNAQKGLRNEVSDITLLQADIAESWRENDRDYATAALRYESRDVM 287 Query: 189 YDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++ ++ D + + ++WTF R NW L + + Sbjct: 288 RERGSGKVVEGDEDHPTETTELWTFTRQNGS---NWKLSAIQQA 328 >gi|254719318|ref|ZP_05181129.1| import inner membrane translocase subunit Tim44 [Brucella sp. 83/13] gi|265984320|ref|ZP_06097055.1| import inner membrane translocase subunit Tim44 [Brucella sp. 83/13] gi|306839093|ref|ZP_07471910.1| import inner membrane translocase subunit Tim44 [Brucella sp. NF 2653] gi|264662912|gb|EEZ33173.1| import inner membrane translocase subunit Tim44 [Brucella sp. 83/13] gi|306405640|gb|EFM61902.1| import inner membrane translocase subunit Tim44 [Brucella sp. NF 2653] Length = 342 Score = 95.4 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 65/228 (28%), Gaps = 12/228 (5%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M + + A I FV +R ++ +G + + + + Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQ-TAAAGAGHAGAQPFGASQPFGSAKSASGQ 181 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 F V+ D D F I ++ A Sbjct: 182 GSFSGRTPSVNPFETKQAAAPVVEDEPMDVGQEDLDRF----EQMLVDIQGAYGREDYAA 237 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + KL + L S K + V + + A E N Y T+ + I Sbjct: 238 LRKLTTPEAMSCLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAI 297 Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D+ ++ +P + +++WTF R W L + + E Sbjct: 298 DVMVDRTSGAIVEGNPNEPVESVELWTFTR---IDGGAWQLAAIQGTE 342 >gi|134279597|ref|ZP_01766309.1| Tim44 domain protein [Burkholderia pseudomallei 305] gi|134248797|gb|EBA48879.1| Tim44 domain protein [Burkholderia pseudomallei 305] Length = 323 Score = 95.0 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58 F M + +I L A ++ + G + G + + G + Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPALNRGHDGYSQDAGIQRPA 164 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + G +V FD + FL A+ + + ++ Sbjct: 165 APGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 224 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 EG + I + + F + + V D +++ ++ Sbjct: 225 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 281 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 R L+ + ++W + + W+L + Sbjct: 282 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 320 >gi|254197071|ref|ZP_04903495.1| Tim44-like domain protein [Burkholderia pseudomallei S13] gi|169653814|gb|EDS86507.1| Tim44-like domain protein [Burkholderia pseudomallei S13] Length = 339 Score = 95.0 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58 F M + +I L A ++ + G + G + + G + + Sbjct: 121 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRQA 180 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + G +V FD + FL A+ + + ++ Sbjct: 181 APGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 240 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 EG + I + + F + + V D +++ ++ Sbjct: 241 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 297 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 R L+ + ++W + + W+L + Sbjct: 298 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 336 >gi|170734093|ref|YP_001766040.1| import inner membrane translocase subunit Tim44 [Burkholderia cenocepacia MC0-3] gi|169817335|gb|ACA91918.1| import inner membrane translocase subunit Tim44 [Burkholderia cenocepacia MC0-3] Length = 343 Score = 95.0 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 69/236 (29%), Gaps = 28/236 (11%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPF--------SGFFSGKYVFSKR 54 F M + +I L A + ++ R + ++ E + SG +S F + Sbjct: 124 FASMMANVIVIALLAMVGIWLI---RKFMNRRRPQEPAYSVGGAASSSGGYSQSPSFQQG 180 Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 + + + + V FD + FL A+ + + Sbjct: 181 NTGSNYAGSGSSYANEAQGVFGGGAAAAGAAAAAAAPLQVPAGFDIEAFLRSAKVYFVRL 240 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ +G + I + + F + S + + V D +++ Sbjct: 241 QAAWDQGNLADIREFTTPEM---FAEIKIDLDSRGNDANQTDVVQLDAELVAIEDRGIEQ 297 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R L+ + ++W + + W+L + Sbjct: 298 SASVRFH-----------GLIREAANTSAAPFDEVWNLSK---SGSQGWLLAGIQQ 339 >gi|73540138|ref|YP_294658.1| import inner membrane translocase, subunit Tim44 [Ralstonia eutropha JMP134] gi|72117551|gb|AAZ59814.1| Mitochondrial import inner membrane translocase, subunit Tim44 [Ralstonia eutropha JMP134] Length = 327 Score = 95.0 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 25/219 (11%), Positives = 62/219 (28%), Gaps = 16/219 (7%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSK-RDERGIITLGKGKKKDNL 71 ++L A + F +R G N++P + + + Sbjct: 122 LILIALVAFVAIWLIRKFRGGSQRNQQPAYAGAGNAGGMGDLGNSAEPMLREQTPSPAAS 181 Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 + + + V DFD + FL A+ + + ++ G + I + Sbjct: 182 NPVMPAAGAAAVAADAAQQPWGVPADFDTEAFLRNAKVHFVRLQAAWDAGNLDDIREFTT 241 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 + F + V + V + +++ N ++R Sbjct: 242 PEM---FAEIKMDLAERGAEVNKTDVVTLEAQLLGIESAPNQHLASVRF----------- 287 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ E ++W + + W+L + Sbjct: 288 SGMIRERTGEAAQPFAEVWNLAKPV-SGTGGWLLAGIQQ 325 >gi|167901351|ref|ZP_02488556.1| Tim44-like domain protein [Burkholderia pseudomallei NCTC 13177] Length = 251 Score = 95.0 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58 F M + +I L A ++ + G + G + + G + Sbjct: 33 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPALNRGHDGYSQDAGIQRPA 92 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + G +V FD + FL A+ + + ++ Sbjct: 93 APGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 152 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 EG + I + + F + + V D +++ ++ Sbjct: 153 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 209 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 R L+ + ++W + + W+L + Sbjct: 210 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 248 >gi|167844353|ref|ZP_02469861.1| Tim44-like domain protein [Burkholderia pseudomallei B7210] Length = 258 Score = 95.0 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58 F M + +I L A ++ + G + G + + G + + Sbjct: 40 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRQA 99 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + G +V FD + FL A+ + + ++ Sbjct: 100 APGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 159 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 EG + I + + F + + V D +++ ++ Sbjct: 160 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 216 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 R L+ + ++W + + W+L + Sbjct: 217 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 255 >gi|126454670|ref|YP_001064966.1| Tim44-like domain-containing protein [Burkholderia pseudomallei 1106a] gi|242315731|ref|ZP_04814747.1| Tim44 domain protein [Burkholderia pseudomallei 1106b] gi|126228312|gb|ABN91852.1| Tim44 domain protein [Burkholderia pseudomallei 1106a] gi|242138970|gb|EES25372.1| Tim44 domain protein [Burkholderia pseudomallei 1106b] Length = 323 Score = 94.6 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58 F M + +I L A ++ + G + G + + G + + Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRQA 164 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + G +V FD + FL A+ + + ++ Sbjct: 165 APGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 224 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 EG + I + + F + + V D +++ ++ Sbjct: 225 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 281 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 R L+ + ++W + + W+L + Sbjct: 282 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 320 >gi|50085732|ref|YP_047242.1| hypothetical protein ACIAD2665 [Acinetobacter sp. ADP1] gi|49531708|emb|CAG69420.1| conserved hypothetical protein; putative membrane protein [Acinetobacter sp. ADP1] Length = 340 Score = 94.6 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 58/221 (26%), Gaps = 18/221 (8%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 I+L A I FF+F + G K GN G FS Sbjct: 136 IWIVLIAAIAFFIFRRF-GAKKKLAGNNPYAPNNAGGSTPFSTSTTPRSNAGADNTNIFG 194 Query: 71 LDSINELFPIGTRLNKVMRDI-VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 P + + +P FL AR + I + I + Sbjct: 195 QSVGGGAAPTAAPFGTAYSNSGNQLPDGTEPAAFLRIARQRFNHIQSVNSASNIEEIRRY 254 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + +Y + ++ + + + + S E +++R Sbjct: 255 LTPDLYASMYSDIM----ANQDQDVAEFSNLNAMVADTSTENGQYIVSVRF--------- 301 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + ++W FV+ + W + + Sbjct: 302 --TGTVSEDLNSQPQPFSEVWHFVKPAGSTE-EWKVAGIQQ 339 >gi|242012401|ref|XP_002426921.1| import inner membrane translocase subunit TIM44, putative [Pediculus humanus corporis] gi|212511150|gb|EEB14183.1| import inner membrane translocase subunit TIM44, putative [Pediculus humanus corporis] Length = 474 Score = 94.6 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 65/178 (36%), Gaps = 3/178 (1%) Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-E 112 + + D + I T L++ + +IV V F FL++ Sbjct: 288 EESENPMIRLSRLFTDKVTYIMGGIFQNTELSETLTEIVKVDPGFTKAKFLHQCETDIIP 347 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 I+++ G + + Y + + K+ + S ++ I+ + + I + Sbjct: 348 NILEAMVRGDLDILRDWCHDGPYNLLSQPIKQIKAMGGKLDSKILDIEGLDLTVGKIMDQ 407 Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIST 228 + I Q I DK+N +I DP+ +V +W R+ +P W L+ Sbjct: 408 GPVLIITFTCQQIQCVRDKNNKVIDGDPQKVMRVNYVWALSRDKSVLDPKAAWRLLDI 465 >gi|134296928|ref|YP_001120663.1| import inner membrane translocase subunit Tim44 [Burkholderia vietnamiensis G4] gi|134140085|gb|ABO55828.1| import inner membrane translocase, subunit Tim44 [Burkholderia vietnamiensis G4] Length = 341 Score = 94.6 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 64/236 (27%), Gaps = 28/236 (11%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I L A + ++ R + ++ +E +S S Sbjct: 122 FASMMANVIVIALLAMVGIWLI---RKFMNRRRPHEPAYSAGGSASSAGGYAQGSSFQQG 178 Query: 63 GKGK--------KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 G + + + V FD + FL A+ + + Sbjct: 179 SGGNYAGSGSSYANEAQSVFGGGAAAAGAAGALGAAPLQVPAGFDTEAFLRSAKVYFVRL 238 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ +G + I + + F + S + V D +++ Sbjct: 239 QAAWDQGNMADIREFTTPEM---FAEIKIDLDSRGNEANQTDVVQLDAELVAIEDRGIEQ 295 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R L+ S ++W + W+L + Sbjct: 296 AASVRFH-----------GLIRESANASAAPFEEVWNLSK---SGGQGWLLAGIQQ 337 >gi|301058972|ref|ZP_07199941.1| Tim44-like domain protein [delta proteobacterium NaphS2] gi|300446968|gb|EFK10764.1| Tim44-like domain protein [delta proteobacterium NaphS2] Length = 250 Score = 94.6 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 78/223 (34%), Gaps = 13/223 (5%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG--KKK 68 F IL+ + +F++ + +G K FS Sbjct: 38 FEILIIGGLIYFLYKKF-------SGKNKSKRSLFSSPDGGGGSGGGYESISSSQYRPPD 90 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 I ++ P+ + ++ + + FDP++F A++ + + ++ + +++ Sbjct: 91 MASSGIPDMAPVNSSVDD-LDTVRHYDPGFDPENFKEFAQDVFFKVQAAWTRRDISVMKQ 149 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 + +++ ++ + ++ + + + + + I++ ++ ++ + + Sbjct: 150 HLGTQLLGEYEQHFADLRAKGQENRLENIAVRSVDIVDMGEMGGEPFVIVQFRANLLDYT 209 Query: 189 YD-KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D ++ K + W F R+ S W L + Sbjct: 210 VDEATGQVLEGSSSEPVKFEERWAFSRSPGSSQ--WKLEGIQE 250 >gi|317050977|ref|YP_004112093.1| import inner membrane translocase subunit Tim44 [Desulfurispirillum indicum S5] gi|316946061|gb|ADU65537.1| import inner membrane translocase subunit Tim44 [Desulfurispirillum indicum S5] Length = 249 Score = 94.6 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 84/221 (38%), Gaps = 13/221 (5%) Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 F IL I FF+ R + G+ + N P + G +D + + Sbjct: 32 FSIFDILFIGAIIFFIV---RALRGRTSRNNNPKDDWTLGGKD---QDSYSPTASNEPRT 85 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 D I L+P T +K +R I +F DFL AR + + + ++ IE Sbjct: 86 TPGADKITSLYPEQT-THKGLRPIEMSDPNFTEGDFLAAAREVFSTVQQAKANEELEQIE 144 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 L+D + + ++T + K V+ I + +A + T IT++ Sbjct: 145 FLMDKAMLNQLQEDIATWRKEGKRVQLDSATIHSALVADAIQQMGTDCITVKFEATLDRT 204 Query: 188 SYDKDNLLISSDPEIFGK-VIDIWTFVRNIPPSNPNWVLIS 227 D + +PE + V + W F+RNI W LI Sbjct: 205 FLPVD---VEGEPEPVHETVTEYWRFMRNIGE--AAWQLIG 240 >gi|194900032|ref|XP_001979561.1| GG16152 [Drosophila erecta] gi|190651264|gb|EDV48519.1| GG16152 [Drosophila erecta] Length = 459 Score = 94.6 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + + D + + T L++ M ++V + FD KDFL + Sbjct: 274 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPCFDQKDFLRDCETDIIPN 333 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I++S G + ++ + + + K + S ++ I+++++ + E Sbjct: 334 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGLYLDSKILDIENIELAMGKVMEQG 393 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ + ++ DPE +V +W R+ NP W L+ Sbjct: 394 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 449 >gi|195569739|ref|XP_002102866.1| GD20131 [Drosophila simulans] gi|194198793|gb|EDX12369.1| GD20131 [Drosophila simulans] Length = 304 Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + + D + + T L++ M ++V + FD KDFL + Sbjct: 119 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 178 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I++S G + ++ + + + K + S ++ I+++++ + E Sbjct: 179 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGLYLDSKILDIENIELAMGKVMEQG 238 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ + ++ DPE +V +W R+ NP W L+ Sbjct: 239 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 294 >gi|167561581|ref|ZP_02354497.1| Tim44-like domain family protein [Burkholderia oklahomensis EO147] Length = 324 Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 26/238 (10%), Positives = 64/238 (26%), Gaps = 30/238 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I L A ++ + + G ++P + + Sbjct: 105 FASMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPSQSRGGYGQDAGVPR 160 Query: 63 GKGKKKDNLDSINELFPIGTRLNKV---------MRDIVSVYTDFDPKDFLNEARNSYEA 113 S + R+ +V FD + FL A+ + Sbjct: 161 QAASNDAFPGSGSAYAGEAQRMFGGAAAATTAAAAAAAPAVPAGFDAEAFLRNAKVYFVR 220 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ EG + I + + F + + V D +++ Sbjct: 221 LQAAWDEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGE 277 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + ++R L+ + ++W + + W+L + Sbjct: 278 HFASVRFH-----------GLIREAQGASAEPFEEVWNLSK---SGSQGWLLAGIQQV 321 >gi|258593729|emb|CBE70070.1| Import inner membrane translocase, subunit Tim44 precursor (fragment) [NC10 bacterium 'Dutch sediment'] Length = 244 Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 75/223 (33%), Gaps = 16/223 (7%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 +++ I ++ V+ +++ +P ++ + ER Sbjct: 36 MDLVILGGIGLAIYW----VVKQRS---RPALIEAPYQHQRTWSAEREPERYQGAAAGQA 88 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 L++ M I + F+ + + + ++ + I ++ Sbjct: 89 TMV------QEGDLDQGMAHIRQMDPGFETGRLREICTDLFFKVQAAWGNRDLEPIRTIL 142 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 ++ + ++ K + + + +++ A E+ Y+T+R + + + D Sbjct: 143 TPEMHTQLGADVMRLRNERKINRLENIAVRSVELTEAWQEQGQDYVTVRFLANLLDYTVD 202 Query: 191 K-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + + ++ K + WT R + NP W L + + Sbjct: 203 EGTSQVVDGSRTDPVKFEEYWTVTRPVG-PNP-WRLAAINQAD 243 >gi|195353703|ref|XP_002043343.1| GM10044 [Drosophila sechellia] gi|194127457|gb|EDW49500.1| GM10044 [Drosophila sechellia] Length = 458 Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + + D + + T L++ M ++V + FD KDFL + Sbjct: 273 ESENPVIRASRLLTDKMSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 332 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I++S G + ++ + + + K + S ++ I+++++ + E Sbjct: 333 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGLYLDSKILDIENIELAMGKVMEQG 392 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ + ++ DPE +V +W R+ NP W L+ Sbjct: 393 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 448 >gi|332852444|ref|XP_003316109.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44 isoform 1 [Pan troglodytes] Length = 452 Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 3/196 (1%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 E + + D + + T +++V+ +I+ V Sbjct: 250 ENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPA 309 Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD FL + N ++++ G++ ++ Y + K+ S + Sbjct: 310 FDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRI 369 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 + ID++ + + E + I Q + + ++ DP+ +++ +W R+ Sbjct: 370 LDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQ 429 Query: 217 PPSNP--NWVLISTKL 230 NP W L+ Sbjct: 430 DELNPYVAWRLLDISA 445 >gi|167822777|ref|ZP_02454248.1| Tim44-like domain protein [Burkholderia pseudomallei 9] Length = 225 Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58 F M + +I L A ++ + G + G + + G + + Sbjct: 7 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRQA 66 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + G +V FD + FL A+ + + ++ Sbjct: 67 APGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 126 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 EG + I + + F + + V D +++ ++ Sbjct: 127 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGTNQTDVVQLDAELLAVEDRGGEHLASV 183 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 R L+ + ++W + + W+L + Sbjct: 184 RFH-----------GLIREAQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 222 >gi|237807609|ref|YP_002892049.1| import inner membrane translocase subunit Tim44 [Tolumonas auensis DSM 9187] gi|237499870|gb|ACQ92463.1| import inner membrane translocase subunit Tim44 [Tolumonas auensis DSM 9187] Length = 286 Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 74/223 (33%), Gaps = 31/223 (13%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 F ILL A + F F LR +P G ++ + G Sbjct: 93 GLQIFDILLMAGVAFLAFRFLRNRKPATAAGPQPAYGMPYQTKQSTESAFQKPEYAGNTS 152 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 D++ P G F+ +F+ A Y + ++ + I Sbjct: 153 FSPATDTVPFDLPEG----------------FNTAEFIKGACEHYRTLQVAWNDNDFSKI 196 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 ++ V ++ + + + + V D +++ A + N+ I++ G++ Sbjct: 197 QEYVTPELFNELKQERANYTGA----QHTEVLYVDAELVRAERKINSAQISVLFKGRYRD 252 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + + E ++W RN+ +N W+++ + Sbjct: 253 S--------VEGIEEDI---HEVWHLERNLSSANAPWLIVGIE 284 >gi|33636719|ref|NP_006342.2| mitochondrial import inner membrane translocase subunit TIM44 precursor [Homo sapiens] gi|25014073|sp|O43615|TIM44_HUMAN RecName: Full=Mitochondrial import inner membrane translocase subunit TIM44; Flags: Precursor gi|21708003|gb|AAH33628.1| Translocase of inner mitochondrial membrane 44 homolog (yeast) [Homo sapiens] gi|119589360|gb|EAW68954.1| translocase of inner mitochondrial membrane 44 homolog (yeast), isoform CRA_a [Homo sapiens] gi|119589361|gb|EAW68955.1| translocase of inner mitochondrial membrane 44 homolog (yeast), isoform CRA_a [Homo sapiens] gi|123980796|gb|ABM82227.1| translocase of inner mitochondrial membrane 44 homolog (yeast) [synthetic construct] gi|123995621|gb|ABM85412.1| translocase of inner mitochondrial membrane 44 homolog (yeast) [synthetic construct] gi|158260291|dbj|BAF82323.1| unnamed protein product [Homo sapiens] gi|307685105|dbj|BAJ20483.1| translocase of inner mitochondrial membrane 44 homolog [synthetic construct] Length = 452 Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 3/196 (1%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 E + + D + + T +++V+ +I+ V Sbjct: 250 ENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPA 309 Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD FL + N ++++ G++ ++ Y + K+ S + Sbjct: 310 FDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRI 369 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 + ID++ + + E + I Q + + ++ DP+ +++ +W R+ Sbjct: 370 LDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQ 429 Query: 217 PPSNP--NWVLISTKL 230 NP W L+ Sbjct: 430 DELNPYAAWRLLDISA 445 >gi|126440320|ref|YP_001057720.1| Tim44-like domain-containing protein [Burkholderia pseudomallei 668] gi|126219813|gb|ABN83319.1| Tim44-like domain protein [Burkholderia pseudomallei 668] Length = 324 Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 26/238 (10%), Positives = 62/238 (26%), Gaps = 30/238 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGK---------YVFSK 53 F M + +I L A ++ + + G ++P Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGI 160 Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 + + G +F +V FD + FL A+ + Sbjct: 161 QRQAAPGGAFPGSGSAYAGEAQRVFGGAAAATAAAATAPAVPAGFDTEAFLRNAKVYFVR 220 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ EG + I + + F + + V D +++ Sbjct: 221 LQAAWDEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGE 277 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++R L+ + ++W + + W+L + Sbjct: 278 HLASVRFH-----------GLIREAQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 321 >gi|2809420|gb|AAB97740.1| translocase of inner mitochondrial membrane Tim44 precursor [Homo sapiens] Length = 452 Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 3/196 (1%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 E + + D + + T +++V+ +I+ V Sbjct: 250 ENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPA 309 Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD FL + N ++++ G++ ++ Y + K+ S + Sbjct: 310 FDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRI 369 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 + ID++ + + E + I Q + + ++ DP+ +++ +W R+ Sbjct: 370 LDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQ 429 Query: 217 PPSNP--NWVLISTKL 230 NP W L+ Sbjct: 430 DELNPYAAWRLLDISA 445 >gi|24648138|ref|NP_650786.2| CG11779, isoform A [Drosophila melanogaster] gi|78706780|ref|NP_001027193.1| CG11779, isoform D [Drosophila melanogaster] gi|7300484|gb|AAF55639.1| CG11779, isoform A [Drosophila melanogaster] gi|71854566|gb|AAZ52532.1| CG11779, isoform D [Drosophila melanogaster] Length = 459 Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + + D + + T L++ M ++V + FD KDFL + Sbjct: 274 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 333 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I++S G + ++ + + + K + S ++ I+++++ + E Sbjct: 334 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGVYLDSKILDIENIELAMGKVMEQG 393 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ + ++ DPE +V +W R+ NP W L+ Sbjct: 394 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 449 >gi|195497862|ref|XP_002096280.1| GE25149 [Drosophila yakuba] gi|194182381|gb|EDW95992.1| GE25149 [Drosophila yakuba] Length = 459 Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + + D + + T L++ M ++V + FD KDFL + Sbjct: 274 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 333 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I++S G + ++ + + + K + S ++ I+++++ + E Sbjct: 334 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGLYLDSKILDIENIELAMGKVMEQG 393 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ + ++ DPE +V +W R+ NP W L+ Sbjct: 394 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 449 >gi|198450930|ref|XP_001358182.2| GA11194 [Drosophila pseudoobscura pseudoobscura] gi|198131257|gb|EAL27319.2| GA11194 [Drosophila pseudoobscura pseudoobscura] Length = 458 Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 65/180 (36%), Gaps = 3/180 (1%) Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-E 112 + + + + + T L++ M ++V + FD K FL + Sbjct: 272 EESENPMIRASRLLTEKVSDVMGGLFSKTELSETMTELVKIDPAFDQKQFLRDCETDIIP 331 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 ++++ G + ++ Y ++ K + + S ++ I+D+ + + + Sbjct: 332 NVLEAIVRGDLEILKDWCFESTYNVIATPITQAKKSGLYLDSKILDIEDIDLAMGKVMDQ 391 Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 + I Q I D ++ DPE +V +W R+ NP W L+ Sbjct: 392 GPVLIITFQAQQIMCVRDPKGKVVEGDPEKVMRVAYVWVLCRDREELNPKAAWRLLEISA 451 >gi|25009742|gb|AAN71045.1| AT09326p [Drosophila melanogaster] gi|40882559|gb|AAR96191.1| AT24717p [Drosophila melanogaster] Length = 459 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + + D + + T L++ M ++V + FD KDFL + Sbjct: 274 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 333 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I++S G + ++ + + + K + S ++ I+++++ + E Sbjct: 334 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGLYLDSKILDIENIELAMGKVMEQG 393 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ + ++ DPE +V +W R+ NP W L+ Sbjct: 394 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 449 >gi|260310504|gb|ACX36515.1| RE11601p [Drosophila melanogaster] Length = 428 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 67/176 (38%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + + D + + T L++ M ++V + FD KDFL + Sbjct: 243 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 302 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I++S G + ++ + + + K + S ++ I+++++ E Sbjct: 303 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGVYLDSKILDIENIELAMGKFMEQG 362 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ + ++ DPE +V +W R+ NP W L+ Sbjct: 363 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 418 >gi|195143739|ref|XP_002012855.1| GL23705 [Drosophila persimilis] gi|194101798|gb|EDW23841.1| GL23705 [Drosophila persimilis] Length = 458 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 65/180 (36%), Gaps = 3/180 (1%) Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-E 112 + + + + + T L++ M ++V + FD K FL + Sbjct: 272 EESENPMIRASRLLTEKVSDVMGGLFSKTELSETMTELVKIDPAFDQKQFLRDCETDIIP 331 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 ++++ G + ++ Y ++ K + + S ++ I+D+ + + + Sbjct: 332 NVLEAIVRGDLEILKDWCFESTYNIIATPITQAKKSGLYLDSKILDIEDIDLAMGKVMDQ 391 Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 + I Q I D ++ DPE +V +W R+ NP W L+ Sbjct: 392 GPVLIITFQAQQIMCVRDPKGKVVEGDPEKVMRVAYVWVLCRDREELNPKAAWRLLEISA 451 >gi|24648140|ref|NP_732403.1| CG11779, isoform B [Drosophila melanogaster] gi|7300485|gb|AAF55640.1| CG11779, isoform B [Drosophila melanogaster] Length = 428 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + + D + + T L++ M ++V + FD KDFL + Sbjct: 243 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 302 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I++S G + ++ + + + K + S ++ I+++++ + E Sbjct: 303 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGVYLDSKILDIENIELAMGKVMEQG 362 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ + ++ DPE +V +W R+ NP W L+ Sbjct: 363 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 418 >gi|222149642|ref|YP_002550599.1| hypothetical protein Avi_3590 [Agrobacterium vitis S4] gi|221736624|gb|ACM37587.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 270 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 31/225 (13%), Positives = 65/225 (28%), Gaps = 15/225 (6%) Query: 11 FLILLFA---FITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 F ILL + F + R + P S + + + G G G Sbjct: 57 FQILLIGGLIMLAMRFFNRNR----TASSYAGPVSRNDMSQPGSAPQGSSGGSPSGFGGF 112 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 D + F + + + ++ E A+ Sbjct: 113 SIPKMGSGAALGATRPAVVKAGTDDVGIGPKDLEIF----ESLLKDMQKAYAEEDYSALR 168 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 ++ + L + + V + + A E Y T+ + + I Sbjct: 169 RITTPEAMSYLAEELGEHATKGVKNEVRDVHLLQGDLAEAWREGTVDYATVAMRYEAIDV 228 Query: 188 SYDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 D+ ++ DP+ + +++WTFVR W + + + Sbjct: 229 MRDRATGAVVDGDPDHPQQSVEVWTFVRRPGSG---WSISAIQSA 270 >gi|62897685|dbj|BAD96782.1| translocase of inner mitochondrial membrane 44 homolog [Homo sapiens] Length = 452 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 3/196 (1%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 E + + D + + T +++V+ +I+ V Sbjct: 250 ENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPA 309 Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD FL + N ++++ G++ ++ Y + K+ S + Sbjct: 310 FDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRI 369 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 + ID++ + + E + I Q + + ++ DP+ +++ +W R+ Sbjct: 370 LDIDNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQ 429 Query: 217 PPSNP--NWVLISTKL 230 NP W L+ Sbjct: 430 DELNPYAAWRLLDISA 445 >gi|307199490|gb|EFN80103.1| Mitochondrial import inner membrane translocase subunit TIM44 [Harpegnathos saltator] Length = 410 Score = 93.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 64/171 (37%), Gaps = 6/171 (3%) Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAI 126 D + I T L++ + +I + +F FL + + I+++ G + + Sbjct: 238 TDKVTDIIGGLFQKTELSETLTEICKLDPNFSRIQFLKDCETDFIPNILEAMVRGDLEIL 297 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + Y L + + S ++ ID++ ++ + + + I Q I Sbjct: 298 KDWCHEAPYNVIAQPLKEVQKLGYRLDSKILDIDNVDLMMGKMMDQGPVLIIGFQCQQIM 357 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWV---LISTKLGE 232 + N ++ DP+ +V IW R+ NP W L +T + Sbjct: 358 CVRNSKNEVVEGDPQKVMRVNYIWVLCRDRTELNPKAAWRLLDLSATSSEQ 408 >gi|195037110|ref|XP_001990008.1| GH18477 [Drosophila grimshawi] gi|193894204|gb|EDV93070.1| GH18477 [Drosophila grimshawi] Length = 452 Score = 93.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 72/176 (40%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEA 113 + + D + + T L++ M ++V + +FD K+FL++ ++ Sbjct: 267 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPNFDQKEFLHDCEKDIIPN 326 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 ++++ G + ++ Y ++ K + + S ++ I+++++ + E Sbjct: 327 VLEAIVRGDLEILKDWCFESTYNIIATPITQAKKSGLYLDSKILDIENIELAMGKVMEQG 386 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ ++ DP+ +V +W R+ NP W L+ Sbjct: 387 PVLIITFQAQQIMCVRDQKAQVVEGDPDKVMRVHYVWVLCRDRNELNPKAAWRLME 442 >gi|19483882|gb|AAH23454.1| Timm44 protein [Mus musculus] Length = 450 Score = 93.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 65/179 (36%), Gaps = 3/179 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + ++ D + + T +++V+ +I+ V FD FL++ Sbjct: 265 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQCETDIIPN 324 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G++ ++ Y + K+ S ++ I ++ + + E Sbjct: 325 ILEAMISGELDILKDWCYEATYSQLAHPIQQAKALGFQFHSRILDISNVDLAMGKMMEQG 384 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 + + Q + + + DP+ +++ +W R+ NP W L+ Sbjct: 385 PVLIVTFQAQVVMVIKNSKGEVYDGDPDKVQRMLYVWALCRDQEELNPYAAWRLLDISA 443 >gi|237747318|ref|ZP_04577798.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gi|229378669|gb|EEO28760.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 305 Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 26/227 (11%), Positives = 69/227 (30%), Gaps = 26/227 (11%) Query: 5 KMDSGDFLILLFAFITFFVF-LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 +G +L I +V LR ++ + P + + + + Sbjct: 102 GDMAGMISTILMLVIIVYVVRFLLRRFSKRRQMEQDPTAYASNYRNTGYQHSS------- 154 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 + + F + D + DFD FL A++ + + ++ +G + Sbjct: 155 ---TPEIGSGLPHQFQGNQSGAGAVSDTWGIPADFDVPAFLRAAKSYFIRMQAAWDKGDI 211 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 + I + + F + + + + V D +++ + +++ Sbjct: 212 NDIHEFTTPEM---FAEIRLQLQERGDSPNVTDVVSLDAELLGIETLNDEYMASVKF--- 265 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + ++ ++W R I + WVL + Sbjct: 266 --------SGKIREAESAPAEPFEEVWNLTRPISKKDG-WVLAGIQQ 303 >gi|63093891|dbj|BAD98172.1| hypothetical protein [Drosophila parabipectinata] Length = 460 Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 68/176 (38%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + + D + + T L++ M ++V + FD K+FL++ Sbjct: 275 ESENPMIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKEFLHDCETDIIPN 334 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G + ++ Y ++ K + S ++ I+++++ + E Sbjct: 335 ILEAIVRGDLEILKDWCFESTYNIIATPITQAKKAGLYLDSKILDIENIELAMGKVMEQG 394 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ ++ DPE +V +W R+ NP W L+ Sbjct: 395 PVLIITFQAQQIMCVRDQKAQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 450 >gi|170763467|ref|NP_035722.2| mitochondrial import inner membrane translocase subunit TIM44 precursor [Mus musculus] gi|84570125|gb|AAI10678.1| Timm44 protein [Mus musculus] gi|109730975|gb|AAI17524.1| Translocase of inner mitochondrial membrane 44 [Mus musculus] gi|109731467|gb|AAI17525.1| Translocase of inner mitochondrial membrane 44 [Mus musculus] gi|148690045|gb|EDL21992.1| translocase of inner mitochondrial membrane 44, isoform CRA_a [Mus musculus] Length = 452 Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 65/179 (36%), Gaps = 3/179 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + ++ D + + T +++V+ +I+ V FD FL++ Sbjct: 267 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQCETDIIPN 326 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G++ ++ Y + K+ S ++ I ++ + + E Sbjct: 327 ILEAMISGELDILKDWCYEATYSQLAHPIQQAKALGFQFHSRILDISNVDLAMGKMMEQG 386 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 + + Q + + + DP+ +++ +W R+ NP W L+ Sbjct: 387 PVLIVTFQAQVVMVIKNSKGEVYDGDPDKVQRMLYVWALCRDQEELNPYAAWRLLDISA 445 >gi|6016369|sp|O35857|TIM44_MOUSE RecName: Full=Mitochondrial import inner membrane translocase subunit TIM44; Flags: Precursor gi|2351410|gb|AAB97624.1| translocase of inner mitochondrial membrane [Mus musculus] Length = 452 Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 65/179 (36%), Gaps = 3/179 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + ++ D + + T +++V+ +I+ V FD FL++ Sbjct: 267 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQCETDIIPN 326 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G++ ++ Y + K+ S ++ I ++ + + E Sbjct: 327 ILEAMISGELDILKDWCYEATYSQLAHPIQQAKALGFQFHSRILDISNVDLAMGKMMEQG 386 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 + + Q + + + DP+ +++ +W R+ NP W L+ Sbjct: 387 PVLIVTFQAQVVMVIKNSKGEVYDGDPDKVQRMLYVWALCRDQEELNPYAAWRLLDISA 445 >gi|296232753|ref|XP_002761726.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44 [Callithrix jacchus] Length = 452 Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 67/196 (34%), Gaps = 3/196 (1%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 E + + + D + + T +++ + +I+ V Sbjct: 250 ENNVVFNRFFEMKVKYDESDNALIRASRALTDKVTDLLGGLFSKTEMSEALTEILRVDPA 309 Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD FL + N ++++ G++ ++ Y + K+ S + Sbjct: 310 FDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRI 369 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 + ID++ + + E + I Q + + ++ DP+ +++ +W R+ Sbjct: 370 LDIDNVDLAMGKMMEQGPVLIITFQAQLVMLVRNPKGEVVEGDPDKVLRMLYVWALCRDQ 429 Query: 217 PPSNP--NWVLISTKL 230 NP W L+ Sbjct: 430 DELNPYAAWRLLDISA 445 >gi|73987180|ref|XP_542123.2| PREDICTED: similar to Import inner membrane translocase subunit TIM44, mitochondrial precursor [Canis familiaris] Length = 454 Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 67/179 (37%), Gaps = 3/179 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + + D + + T +++V+ +I+ V FD + FL + N Sbjct: 269 ESDNALIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPAFDKERFLQQCENDIIPN 328 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 ++++ G++ ++ Y + K+ S ++ ID++ + + E Sbjct: 329 VLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMMEQG 388 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 + I Q + + ++ DP+ +++ +W R+ NP W L+ Sbjct: 389 PVLIITFQAQLVMVIKNPKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRLLDISA 447 >gi|195452294|ref|XP_002073291.1| GK13236 [Drosophila willistoni] gi|194169376|gb|EDW84277.1| GK13236 [Drosophila willistoni] Length = 457 Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 69/176 (39%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + + + + + T L++ M ++V + +FD K+FL++ Sbjct: 272 ESENPVIRASRLLTEKVSDVMGGIFSKTELSETMTELVKIDPNFDQKEFLHDCETDIIPN 331 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G + ++ Y + + K + S ++ I+++++ + E Sbjct: 332 ILEAIVRGDLDILKDWCFESTYSIISTPILNAKKTGLYLDSKILDIENIELAMGKVMEQG 391 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ ++ DPE +V +W R+ NP W L+ Sbjct: 392 PVLIITFQAQQIMCVRDQKAQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 447 >gi|126323825|ref|XP_001376780.1| PREDICTED: similar to Translocase of inner mitochondrial membrane 44 homolog (yeast) [Monodelphis domestica] Length = 443 Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 59/152 (38%), Gaps = 3/152 (1%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T +++V+ +I+ V FD FL + ++++ G++ ++ Y Sbjct: 285 TEMSEVLTEILKVDPTFDKDRFLQQCERDIIPNVLEAMITGELDILKDWCYEATYSQLAH 344 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + KS S ++ I ++ + + E + I Q + + ++ DP Sbjct: 345 PIHQAKSMGLQFHSRILDISNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGDVVEGDP 404 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 + +++ +W R+ NP W L+ Sbjct: 405 DKVLRMLYVWALCRDQTELNPYAAWRLLDISA 436 >gi|4103602|gb|AAD01797.1| putative mitochondrial inner membrane protein import receptor [Homo sapiens] Length = 415 Score = 92.7 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 3/196 (1%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 E + + D + + T +++V+ +I+ V Sbjct: 213 ENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPP 272 Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD FL + N ++++ G++ ++ Y + K+ S + Sbjct: 273 FDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRI 332 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 + ID++ + + E + I Q + + ++ DP+ +++ +W R+ Sbjct: 333 LDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQ 392 Query: 217 PPSNP--NWVLISTKL 230 NP W L+ Sbjct: 393 DELNPYAAWRLLDISA 408 >gi|300798484|ref|NP_001179583.1| mitochondrial import inner membrane translocase subunit TIM44 [Bos taurus] gi|297476712|ref|XP_002688909.1| PREDICTED: translocase of inner mitochondrial membrane 44 homolog (yeast) [Bos taurus] gi|296485872|gb|DAA27987.1| translocase of inner mitochondrial membrane 44 homolog [Bos taurus] Length = 454 Score = 92.7 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 60/152 (39%), Gaps = 3/152 (1%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T +++V+ +I+ V FD FL + N ++++ G++ ++ Y Sbjct: 296 TEMSEVLTEILRVDPAFDKDRFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 355 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K+ S ++ ID + + + E + I Q + + ++ DP Sbjct: 356 PIQQAKALGLQFHSRILDIDHIDLAMGKMMEQGPVLIITFQAQMVMVIKNPKGEVVEGDP 415 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 + +++ +W R+ NP W L+ Sbjct: 416 DKVLRMLYVWALCRDQDELNPYAAWRLLDISA 447 >gi|118103065|ref|XP_418174.2| PREDICTED: similar to Translocase of inner mitochondrial membrane 44 homolog (yeast) [Gallus gallus] Length = 451 Score = 92.7 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 3/179 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + D + + T +++V+ +I+ V FD FL + Sbjct: 266 ESDNAFIRASRAVTDKVTDLIGGLFSKTEMSEVLTEILKVDPSFDKDRFLKQCERDIIPN 325 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 ++++ G++ ++ Y + K+ S ++ ID++ + + E Sbjct: 326 VLEAMISGELDILKDWCYEATYSQLAHPIQQAKAMGLQFHSRILDIDNIDLAMGKMMEQG 385 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 + I Q + ++ ++ DP+ +++ +W R+ NP W L+ Sbjct: 386 PVLIITFQAQIVMVIKNQKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRLLDISS 444 >gi|332852446|ref|XP_512338.3| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44 isoform 2 [Pan troglodytes] Length = 415 Score = 92.7 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 3/196 (1%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 E + + D + + T +++V+ +I+ V Sbjct: 213 ENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPA 272 Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD FL + N ++++ G++ ++ Y + K+ S + Sbjct: 273 FDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRI 332 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 + ID++ + + E + I Q + + ++ DP+ +++ +W R+ Sbjct: 333 LDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQ 392 Query: 217 PPSNP--NWVLISTKL 230 NP W L+ Sbjct: 393 DELNPYVAWRLLDISA 408 >gi|188591179|ref|YP_001795779.1| hypothetical protein RALTA_A0388 [Cupriavidus taiwanensis LMG 19424] gi|170938073|emb|CAP63057.1| conserved hypothetical protein, COG4395 [Cupriavidus taiwanensis LMG 19424] Length = 327 Score = 92.7 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 26/219 (11%), Positives = 63/219 (28%), Gaps = 16/219 (7%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER-GIITLGKGKKKDNL 71 ++L A + F +R G K + ++G + + + Sbjct: 122 LILIALVAFAAIWLIRKFRGSKRAAQPAYAGAGGAPNLGRNAEPMFRGEPTPVSSGSQSA 181 Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 + V + V DFD + FL A+ + + ++ G + I + Sbjct: 182 SPVLPASAAPVAAGAVAQQPWGVPADFDTESFLRNAKVHFVRLQAAWDAGNLDDIREFTT 241 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 + F + V + V + +++ ++R Sbjct: 242 PEM---FAEIKMDLAERGAEVNKTDVVTLEAQLLGIESSPAQHLASVRF----------- 287 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ E ++W + + N W+L + Sbjct: 288 SGMIREKAGEAAQPFGEVWNLAKPV-SGNGGWLLAGIQQ 325 >gi|195388820|ref|XP_002053076.1| GJ23681 [Drosophila virilis] gi|194151162|gb|EDW66596.1| GJ23681 [Drosophila virilis] Length = 428 Score = 92.7 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 70/176 (39%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEA 113 + + D + + T L++ M ++V + +FD K+FL + ++ Sbjct: 243 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPNFDQKEFLYDCEKDIIPN 302 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 ++++ G + ++ Y + K + + S ++ I+++++ + E Sbjct: 303 VLEAIVRGDLEILKDWCFESTYNIIATPIMQAKKSGLYLDSKILDIENIELAMGKVMEQG 362 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ ++ +P+ +V +W R+ NP W L+ Sbjct: 363 PVLIITFQAQQIMCVRDQKAQVVEGNPDKVMRVHYVWVLCRDRNELNPKAAWRLME 418 >gi|217968675|ref|YP_002353909.1| import inner membrane translocase subunit Tim44 [Thauera sp. MZ1T] gi|217506002|gb|ACK53013.1| import inner membrane translocase subunit Tim44 [Thauera sp. MZ1T] Length = 294 Score = 92.7 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 72/228 (31%), Gaps = 26/228 (11%) Query: 5 KMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK 64 +F+++L F +L G ++P + Sbjct: 93 GEGFANFVMILLLAAAAFFVFRLIFRRGANAAAQQPARDLQYAGAPAGAAQQARPQQFEA 152 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 G+ G ++ ++ + FD + F +A+ ++ + + G + Sbjct: 153 GRPL-----------AGGSVSAQSGLDKALASGFDAEGFARQAKLNFIRLQAANDAGNLD 201 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 + + V+ + ++ RK + + V + ++I+ + E + +++R Sbjct: 202 DLREFTTPEVFAELCMQVNERKGAGQR---TDVVELNAQVIDVAEENDRYVVSVRF---- 254 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 LL +IW + + S W++ + + Sbjct: 255 -------SGLLREQAEAAPEAFDEIWHLSKPLAGSGG-WLIAGIQQSQ 294 >gi|194746677|ref|XP_001955803.1| GF18940 [Drosophila ananassae] gi|190628840|gb|EDV44364.1| GF18940 [Drosophila ananassae] Length = 461 Score = 92.7 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 68/176 (38%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + + D + + T L++ M ++V + FD K+FL++ Sbjct: 276 ESENPMIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKEFLHDCETDIIPN 335 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G + ++ + ++ K + S ++ I+++++ + E Sbjct: 336 ILEAIVRGDLEILKDWCFESTFNIIATPITQAKKAGLYLDSKILDIENIELAMGKVMEQG 395 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ ++ DPE +V +W R+ NP W L+ Sbjct: 396 PVLIITFQAQQIMCVRDQKAQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 451 >gi|321466881|gb|EFX77874.1| hypothetical protein DAPPUDRAFT_305300 [Daphnia pulex] Length = 420 Score = 92.7 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 67/192 (34%), Gaps = 3/192 (1%) Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF 98 K + + + + + I T +++ + +I + DF Sbjct: 219 KNPYVNKVLDWKNKYEESDNAVIRASRLLTEKVVDIMGGLFQKTEMSEALTEICKMDPDF 278 Query: 99 DPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157 ++FL + + ++++ G + ++ + + + S + ++ Sbjct: 279 SKEEFLKKCEYDIIPNVLEAMARGDLDILKDWCHEGPFNILSTPIKHALSQGYVIDCRVL 338 Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217 +D++ + + E + I Q I DK N ++ D E +V +W R+ Sbjct: 339 DVDNVDLAMGKVMEQGPILVITFTAQQIMCVRDKANNIVEGDAEKVMRVNYVWVLCRDQT 398 Query: 218 PSNPN--WVLIS 227 + N W L+ Sbjct: 399 ELDVNAAWRLMD 410 >gi|297703381|ref|XP_002828619.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-like [Pongo abelii] Length = 451 Score = 92.7 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 67/196 (34%), Gaps = 3/196 (1%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 E + + D + + T +++V+ +I+ V Sbjct: 249 ENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPA 308 Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD FL + N ++++ G++ ++ Y + K+ S + Sbjct: 309 FDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRI 368 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 + ID++ + + E + I Q + + ++ +P+ +++ +W R+ Sbjct: 369 LDIDNIDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGNPDEVLRMLYVWALCRDQ 428 Query: 217 PPSNP--NWVLISTKL 230 NP W L+ Sbjct: 429 DELNPYAAWRLLDISA 444 >gi|63093892|dbj|BAD98173.1| hypothetical protein [Drosophila parabipectinata] Length = 428 Score = 92.7 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 68/176 (38%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + + D + + T L++ M ++V + FD K+FL++ Sbjct: 243 ESENPMIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKEFLHDCETDIIPN 302 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G + ++ Y ++ K + S ++ I+++++ + E Sbjct: 303 ILEAIVRGDLEILKDWCFESTYNIIATPITQAKKAGLYLDSKILDIENIELAMGKVMEQG 362 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ ++ DPE +V +W R+ NP W L+ Sbjct: 363 PVLIITFQAQQIMCVRDQKAQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 418 >gi|291411565|ref|XP_002722049.1| PREDICTED: translocase of inner mitochondrial membrane 44 [Oryctolagus cuniculus] Length = 452 Score = 92.3 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 68/196 (34%), Gaps = 3/196 (1%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 E + + + D + + T +++V+ +I+ V Sbjct: 250 ENNVVFNRFFEMKMKYDESDNALIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPA 309 Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD FL + N I+++ G++ ++ Y + K+ S + Sbjct: 310 FDKDRFLQQCENDIIPNILEAMISGELDILKDWCYEATYSQLAHPIQQAKALGFQFHSRI 369 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 + +D++ + + E + I Q + + ++ DP+ +++ +W R+ Sbjct: 370 LDVDNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEGDPDKVLRMLYVWALCRDQ 429 Query: 217 PPSNP--NWVLISTKL 230 NP W L+ Sbjct: 430 DELNPYAAWRLLDVSA 445 >gi|254251433|ref|ZP_04944751.1| hypothetical protein BDAG_00618 [Burkholderia dolosa AUO158] gi|124894042|gb|EAY67922.1| hypothetical protein BDAG_00618 [Burkholderia dolosa AUO158] Length = 341 Score = 92.3 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 65/234 (27%), Gaps = 26/234 (11%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFS------KRDE 56 F M + +I L A + ++ R + ++ E +S + + Sbjct: 124 FAGMMANFIVIALLAMVGIWLI---RKFMNRRRPQEPAYSVGGASSSGSYSQGSSFQPGS 180 Query: 57 RGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116 G + V + V FD + FL A+ + + Sbjct: 181 SSNYAGGSSYANEAQRVFGGGAASAAPAAGVAAPALQVPAGFDTEAFLRSAKVYFVRLQA 240 Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 ++ +G + I + + F + S + V D +++ Sbjct: 241 AWDQGNLTDIREFTTPEM---FAEIKIDLDSRGNEANQTDVVQLDAELVAIEDRGIEQSA 297 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R L+ S ++W + + W+L + Sbjct: 298 SVRFH-----------GLIRESANASAEPFDEVWNLSK---SGSQGWLLAGIQQ 337 >gi|89073249|ref|ZP_01159779.1| hypothetical protein SKA34_19790 [Photobacterium sp. SKA34] gi|89050959|gb|EAR56423.1| hypothetical protein SKA34_19790 [Photobacterium sp. SKA34] Length = 291 Score = 92.3 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 81/227 (35%), Gaps = 29/227 (12%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVL---GKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 IL+ I F +F + + G G+ + ++G + + + T Sbjct: 91 GIQFMDILIIGVIAFVLFKLFKAMRTNKGTSMGHRESYAGNSPRQQPQQAQQQYRQATGS 150 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 + + ++ + ++ +F+ FL+ +R+ Y I ++ ++ Sbjct: 151 QSQPQNGGFESTDS-----------DVPFNLPPNFNMNSFLSGSRDHYRIIQGAWNHNEL 199 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 I++ V S ++ D + + + V D +++ A + N+ ++I+ Sbjct: 200 AKIKEYVSSALFADLQAERAKLSGE----QHTEVMYVDAELVRADYDANSAQLSIQF--- 252 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S I + D+W R++ N W+++ + Sbjct: 253 --------SGRYKDSQEGIEEDINDVWHLERDLKTPNAPWLIVGIQA 291 >gi|301773124|ref|XP_002921985.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-like, partial [Ailuropoda melanoleuca] Length = 452 Score = 92.3 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 62/152 (40%), Gaps = 3/152 (1%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T +++V+ +I+ V FD + FL + N ++++ G++ ++ Y Sbjct: 294 TEMSEVLTEILRVDPAFDKERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 353 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + ++ S ++ ID++ + + E + I Q + + ++ DP Sbjct: 354 PIQQARALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEGDP 413 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 + +++ +W R+ NP W L+ Sbjct: 414 DKVLRMLYVWALCRDQDELNPYAAWRLLDISA 445 >gi|317487361|ref|ZP_07946152.1| Tim44-like domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316921384|gb|EFV42679.1| Tim44-like domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 318 Score = 92.3 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 33/221 (14%), Positives = 68/221 (30%), Gaps = 16/221 (7%) Query: 12 LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71 I+L + F F G +P +G F D T K Sbjct: 112 DIILIGGLLFLAFKFFSRRRAATQGAGQPNAGGFDSLRSTPGSDSTHQRTAAPQSGKGGF 171 Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 D L + + +D FD ++FL A+ +Y + +++ + + I + Sbjct: 172 D-WEALTTPSSGQQPLYQDEPKKPAGFDEEEFLRGAKAAYTRLNNAWDKRDLSDIAQFST 230 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 F + + + +K ++ + + + +++ + + Sbjct: 231 PA----FQKEIQQQAAEDKTPGNTEIMLVNASLLSVDTVGDEQIAQVYFNVLLRE----- 281 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 E V +IW FVR + W L + E Sbjct: 282 -----DPSQEAPIDVREIWHFVRP-ASGDGTWKLDGIQQVE 316 >gi|297275995|ref|XP_001098363.2| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44 [Macaca mulatta] Length = 461 Score = 92.3 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 3/196 (1%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 E + + D + + T +++V+ +I+ V Sbjct: 259 ENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPA 318 Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD FL + N ++++ G++ ++ Y + K+ S + Sbjct: 319 FDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAYPIQQAKALGLQFHSRI 378 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 + ID++ + + E + I Q + + ++ DP+ +++ +W R+ Sbjct: 379 LDIDNIDLAMGKMMEPGPVLIITFQAQLVVVVRNPKGEVVEGDPDKVLRMLYVWALCRDQ 438 Query: 217 PPSNP--NWVLISTKL 230 NP W L+ Sbjct: 439 DELNPYAAWRLLDISA 454 >gi|311248590|ref|XP_003123248.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-like [Sus scrofa] Length = 454 Score = 91.9 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 62/152 (40%), Gaps = 3/152 (1%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T +++V+ +I+ V FD + FL + N ++++ G++ ++ Y Sbjct: 296 TEMSEVLTEILRVDPAFDKERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 355 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K+ S ++ ID++ + + E + I Q + + ++ DP Sbjct: 356 PIQQAKALGLQFHSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEGDP 415 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 + +++ +W R+ NP W L+ Sbjct: 416 DKVLRMLYVWALCRDQDELNPYAAWRLLDISA 447 >gi|47225693|emb|CAG08036.1| unnamed protein product [Tetraodon nigroviridis] Length = 397 Score = 91.9 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 3/179 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + + D + + T +++V+ +I+ V FD FL Sbjct: 212 ESDNALIRASRAVTDKMSDLIGGLFSKTEMSEVLTEILKVDPSFDKDSFLKLCERDIIPN 271 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ +G++ ++ Y + K+ S ++ ID++ + + + Sbjct: 272 ILEAMIQGELDVLKDWCYEATYSQLAHPIQQAKATGLKFHSKILDIDNIDLAMGKMMDQG 331 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 + I Q + + ++ DP+ +++ +W R+ NP W L+ Sbjct: 332 PVLIITFQAQLVMVIRNPKGEVVEGDPDKVIRMMYVWALCRDQEELNPYAAWRLLDISA 390 >gi|85544427|pdb|2CW9|A Chain A, Crystal Structure Of Human Tim44 C-Terminal Domain Length = 194 Score = 91.9 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 62/179 (34%), Gaps = 3/179 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + D + + T ++V+ +I+ V FD FL + N Sbjct: 9 ESDNAFIRASRALTDKVTDLLGGLFSKTEXSEVLTEILRVDPAFDKDRFLKQCENDIIPN 68 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 ++++ G++ ++ Y + K+ S ++ ID++ + E Sbjct: 69 VLEAXISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAXGKXVEQG 128 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 + I Q + + ++ DP+ + + +W R+ NP W L+ Sbjct: 129 PVLIITFQAQLVXVVRNPKGEVVEGDPDKVLRXLYVWALCRDQDELNPYAAWRLLDISA 187 >gi|115923274|ref|XP_783807.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115954833|ref|XP_001197316.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 368 Score = 91.9 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 63/193 (32%), Gaps = 3/193 (1%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 E + I+ D + + T L+ V+ +I+ + Sbjct: 166 ENNQVFNKMFDLKMRYDESDNIMVRASKAVTDRVSQLLGGVFSPTELSGVLTEIIKIDPT 225 Query: 98 FDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 F + FL I+++ G + I+ Y + S + Sbjct: 226 FTKEGFLKMCELEIIPNILEAMIRGDLEIIKDWCYEAPYNQLATPIKQATQMGYKFDSKV 285 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 + +D +++ + + + I V Q I A + +++ D E +V +W R+ Sbjct: 286 LDVDMVELSMGKMMDQGPVLVITFVAQQIMAVRNAKGVVVEGDLEKVMRVTYVWVLCRDQ 345 Query: 217 PPSNPN--WVLIS 227 +P W L+ Sbjct: 346 EVLDPTSAWRLLD 358 >gi|115624784|ref|XP_001203738.1| PREDICTED: similar to MGC82677 protein [Strongylocentrotus purpuratus] gi|115633997|ref|XP_001177162.1| PREDICTED: similar to MGC82677 protein [Strongylocentrotus purpuratus] Length = 455 Score = 91.9 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 63/193 (32%), Gaps = 3/193 (1%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 E + I+ D + + T L+ V+ +I+ + Sbjct: 253 ENNQVFNKMFDLKMRYDESDNIMVRASKAVTDRVSQLLGGVFSPTELSGVLTEIIKIDPT 312 Query: 98 FDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 F + FL I+++ G + I+ Y + S + Sbjct: 313 FTKEGFLKMCELEIIPNILEAMIRGDLEIIKDWCYEAPYNQLATPIKQATQMGYKFDSKV 372 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 + +D +++ + + + I V Q I A + +++ D E +V +W R+ Sbjct: 373 LDVDMVELSMGKMMDQGPVLVITFVAQQIMAVRNAKGVVVEGDLEKVMRVTYVWVLCRDQ 432 Query: 217 PPSNPN--WVLIS 227 +P W L+ Sbjct: 433 EVLDPTSAWRLLD 445 >gi|78355820|ref|YP_387269.1| hypothetical protein Dde_0773 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218225|gb|ABB37574.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 301 Score = 91.9 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 72/221 (32%), Gaps = 22/221 (9%) Query: 12 LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71 ILLF + +FL LR + ++ G + + + + Sbjct: 102 DILLFGGV---IFLILRMM--RRRGA-PRGEPAYQAGGAYQGGASHDVRQHDNTMYRQAQ 155 Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 D + L G+ V FD ++FL AR+ Y + +S+ + I Sbjct: 156 DGWSGLRSAGSGSPSSAAPAPEVPAGFDTEEFLQGARSVYTRLQNSWDNRDLDDIRTFTS 215 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 V+ + + + + + + + +++ E + + T+ D Sbjct: 216 PSVFDEIHRQAQD----DPQPSRTELLLINARVLEVKEETDGMLATVYFDVLMRE---DA 268 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +PE V ++W F R + W L + E Sbjct: 269 SG----GNPEQ---VREVWHFHR--ATPDAMWRLDGIQQLE 300 >gi|90579259|ref|ZP_01235069.1| hypothetical protein VAS14_06118 [Vibrio angustum S14] gi|90440092|gb|EAS65273.1| hypothetical protein VAS14_06118 [Vibrio angustum S14] Length = 291 Score = 91.9 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 80/227 (35%), Gaps = 29/227 (12%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVL---GKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 IL+ I F +F + + G G+ + ++G + + + T Sbjct: 91 GIQFMDILIIGVIAFVLFKLFKAMRANKGTPMGHRESYAGNSPRQQPQQAQQQYRQATGS 150 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 + + ++ + ++ +F+ FL+ +R+ Y I ++ ++ Sbjct: 151 QSQPQNGGFESTDS-----------DVPFNLPPNFNMNAFLSGSRDHYRIIQGAWNHNEL 199 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 I++ V ++ D + + + V D +++ A + N+ ++I+ Sbjct: 200 AKIKEYVSPALFADLQAERAKLSGE----QHTEVMYVDAELVRADYDANSAQLSIKF--- 252 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + I + D+W R++ N W+++ + Sbjct: 253 --------SGRYKDTQEGIEEDINDVWHLERDLKTPNAPWLIVGIQA 291 >gi|326934236|ref|XP_003213198.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-like [Meleagris gallopavo] Length = 435 Score = 91.5 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 3/179 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + D + + T +++V+ +I+ V FD FL + Sbjct: 250 ESDNAFIRASRAVTDKVTDLIGGLFSKTEMSEVLTEILKVDPSFDKDRFLKQCERDIIPN 309 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 ++++ G++ ++ Y + K+ S ++ ID++ + + E Sbjct: 310 VLEAMISGELDILKDWCYEATYSQLAHPIQQAKAMGLQFHSRILDIDNIDLAMGKMMEQG 369 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 + I Q + ++ ++ DP+ +++ +W R+ NP W L+ Sbjct: 370 PVLIITFQAQVVMVIKNQKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRLLDISS 428 >gi|56753483|gb|AAW24945.1| SJCHGC05805 protein [Schistosoma japonicum] Length = 417 Score = 91.5 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 65/194 (33%), Gaps = 3/194 (1%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 E + + +I D + S+ F I L +V+ ++ + Sbjct: 215 ENNPYVQRFFDLKANYEESDHLIVRSLRFVTDKVSSLFGGFKINNELQEVLDEVTKMDPS 274 Query: 98 FDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 F+ + F+ R ++++ + ++ + L K +S + Sbjct: 275 FNLESFIRYCRFVVIPNVLEAIVRVDLPILQDWCHEAPFNVLATPLRQIKELGYVSESRI 334 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 + I ++ + I E + I Q I DK+ + DP +V +W R+ Sbjct: 335 LDIHNVDVQMGKIMEQGPVLIITFQAQQIHCIRDKNGTVHEGDPNKVLRVTHVWALCRDQ 394 Query: 217 PPSNP--NWVLIST 228 +P W L+ Sbjct: 395 SEMHPLAAWRLLDI 408 >gi|113866475|ref|YP_724964.1| hypothetical protein H16_A0446 [Ralstonia eutropha H16] gi|113525251|emb|CAJ91596.1| hypothetical membrane spanning protein [Ralstonia eutropha H16] Length = 329 Score = 91.5 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 62/224 (27%), Gaps = 21/224 (9%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKY------VFSKRDERGIITLGKGK 66 ++L A + F +R G ++P R E ++ G Sbjct: 119 LILIALVAFAAIWLIRKFRGGSKRTQQPAYAGAGNAPNLGRSAEPMFRGEPTPVSSGSPA 178 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + + V + V DFD + FL A+ + + ++ G + I Sbjct: 179 GPAANTVLPAASAAPVAADAVAQQPWGVPADFDTEAFLRNAKVHFVRLQAAWDAGNLDDI 238 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + + F + V + V + +++ ++R Sbjct: 239 REFTTPEM---FAEIKMDLADRGAEVNKTDVVTLEAQLLGIESAAAQHIASVRF------ 289 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ E ++W + W+L + Sbjct: 290 -----SGMIREKSGEAAQPFGEVWNLAKP-ASGTGGWLLAGIQQ 327 >gi|329847374|ref|ZP_08262402.1| tim44-like domain protein [Asticcacaulis biprosthecum C19] gi|328842437|gb|EGF92006.1| tim44-like domain protein [Asticcacaulis biprosthecum C19] Length = 212 Score = 91.5 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 92/234 (39%), Gaps = 34/234 (14%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 +++FA + + QL VLG+K G KG Sbjct: 1 MVALIIFAIVAVVILFQLYNVLGRKVGF-----------------RAEDKPVTVKGDDFG 43 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 +L + + P +R+ + + + +F+ +FL +AR SYE +V +F +G++ A++ Sbjct: 44 DLSTKTDKLPEASRM-PNLEMLKTRDANFNELNFLEKARESYEQVVIAFHKGELDAVKDK 102 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + VY F +L R + E+ + S V I + ++ I +R + + Y Sbjct: 103 LSDTVYGIFAKALVGRAAPEETL--SFVDQPKADIDHIDFKDEVAQIRVRFLSEL---VY 157 Query: 190 DKDNLLISSD--PEIF---------GKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +K S P + + WTF + + +N W+L + + Sbjct: 158 EKTEAPAESAVPPTKADAPKVHRSHKRTAEYWTFQKGMKVANSPWLLTKVEAAK 211 >gi|149015618|gb|EDL74999.1| translocator of inner mitochondrial membrane 44, isoform CRA_b [Rattus norvegicus] Length = 453 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 66/179 (36%), Gaps = 3/179 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + ++ D + + T +++V+ +I+ V FD FL++ Sbjct: 268 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDRFLHQCETDIIPN 327 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G++ ++ Y S+ K+ S ++ I ++ + + E Sbjct: 328 ILEAMISGELDILKDWCYEATYNQLAHSIQQAKALGLQFHSRILDISNVDLAMGKMMEQG 387 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 + + Q + + + DP+ +++ +W R+ NP W L+ Sbjct: 388 PVLIVTFQAQLVMVIKNPKGEVFDGDPDKVLRMLYVWALCRDQEELNPYAAWRLLDISA 446 >gi|298292408|ref|YP_003694347.1| import inner membrane translocase subunit Tim44 [Starkeya novella DSM 506] gi|296928919|gb|ADH89728.1| import inner membrane translocase subunit Tim44 [Starkeya novella DSM 506] Length = 331 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 72/231 (31%), Gaps = 12/231 (5%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLG-KKTGNEKPFSGFFSGKYVFSKRDERGIIT 61 F + S ++ L I V +R V+G ++ N+ S + +R+ Sbjct: 111 FSGLGSLAGILGLLLQIALVVI-VVRLVMGWMRSRNQ--PSYAGGARPDPMQREALNGGA 167 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 G R D F E I ++ Sbjct: 168 PMGGAPMGGAPMGGAGAAPRAGFGTGPRGRPIQLQGSDFDTF----ERRLEEIQTAYGRA 223 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 + +L + + L + + + V + + A E+ + Y T+ + Sbjct: 224 DRDTLLRLATPEMGGYLREELDQLERDGLENRLGDVKLLQGDLSEAWAEDGSEYATVAMR 283 Query: 182 GQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + +K ++ DP +V++ WTFVR W+L + + G Sbjct: 284 YELTDVIVEKATGRIVQGDPSRKEQVVEFWTFVR---SPGGEWLLSAIQQG 331 >gi|8394449|ref|NP_058963.1| mitochondrial import inner membrane translocase subunit TIM44 precursor [Rattus norvegicus] gi|6016370|sp|O35094|TIM44_RAT RecName: Full=Mitochondrial import inner membrane translocase subunit TIM44; Flags: Precursor gi|2335041|dbj|BAA21820.1| Tim44 [Rattus norvegicus] Length = 453 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 66/179 (36%), Gaps = 3/179 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + ++ D + + T +++V+ +I+ V FD FL++ Sbjct: 268 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDRFLHQCETDIIPN 327 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G++ ++ Y S+ K+ S ++ I ++ + + E Sbjct: 328 ILEAMISGELDILKDWCYEATYNQLAHSIQQAKALGLQFHSRILDISNVDLAMGKMMEQG 387 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 + + Q + + + DP+ +++ +W R+ NP W L+ Sbjct: 388 PVLIVTFQAQLVMVIKNPKGEVFDGDPDKVLRMLYVWALCRDQEELNPYAAWRLLDISA 446 >gi|224062145|ref|XP_002300777.1| predicted protein [Populus trichocarpa] gi|222842503|gb|EEE80050.1| predicted protein [Populus trichocarpa] Length = 484 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 19/166 (11%), Positives = 56/166 (33%), Gaps = 8/166 (4%) Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 +++ + ++I F DF+ E + + +++++ +G + ++K Sbjct: 313 QDVSDSIFQESDAAASFKEIRRKDPSFSLMDFVAEVQEAVRPVLNAYIKGDIDTLKKYCT 372 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 V +++ + ++ I D+++ + + I + Q + D+ Sbjct: 373 PEVINRCEAEHKAFQAHGIFFDNKILHITDVEVRETKMMGTSPIIIVVFQTQQVHCVRDR 432 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPS-------NPNWVLISTKL 230 + + V W R + P W L+ + Sbjct: 433 HGAITEGGQDTIHTVYYAWAM-RQVDAEELGGGAIYPIWKLMEMQQ 477 >gi|226480686|emb|CAX73440.1| Import inner membrane translocase subunit TIM44, mitochondrial precursor [Schistosoma japonicum] Length = 417 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 64/194 (32%), Gaps = 3/194 (1%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 E + + +I D + S+ F L +V+ ++ + Sbjct: 215 ENNPYVQRFFDLKANYEESDHLIVRSLRFVTDKVSSLFGGFKSTNELQEVLDEVTKMDPS 274 Query: 98 FDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 F+ + F+ R ++++ + ++ + L K +S + Sbjct: 275 FNLESFIRYCRFVVIPNVLEAIVRVDLPILQDWCHEAPFNVLATPLRQIKELGYVSESRI 334 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 + I ++ + I E + I Q I DK+ + DP +V +W R+ Sbjct: 335 LDIHNVDVQMGKIMEQGPVLIITFQAQQIHCIRDKNGTVHEGDPNKVLRVTHVWALCRDQ 394 Query: 217 PPSNP--NWVLIST 228 +P W L+ Sbjct: 395 SEMHPLAAWRLLDI 408 >gi|148690048|gb|EDL21995.1| translocase of inner mitochondrial membrane 44, isoform CRA_d [Mus musculus] Length = 321 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 65/179 (36%), Gaps = 3/179 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + ++ D + + T +++V+ +I+ V FD FL++ Sbjct: 136 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQCETDIIPN 195 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G++ ++ Y + K+ S ++ I ++ + + E Sbjct: 196 ILEAMISGELDILKDWCYEATYSQLAHPIQQAKALGFQFHSRILDISNVDLAMGKMMEQG 255 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 + + Q + + + DP+ +++ +W R+ NP W L+ Sbjct: 256 PVLIVTFQAQVVMVIKNSKGEVYDGDPDKVQRMLYVWALCRDQEELNPYAAWRLLDISA 314 >gi|88858066|ref|ZP_01132708.1| hypothetical protein PTD2_11789 [Pseudoalteromonas tunicata D2] gi|88819683|gb|EAR29496.1| hypothetical protein PTD2_11789 [Pseudoalteromonas tunicata D2] Length = 283 Score = 90.8 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 74/223 (33%), Gaps = 35/223 (15%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 +LL A + F +F ++ V+ K ++ +G S V R T G Sbjct: 92 GLQIMDMLLMALLAFVIFKVVKMVMAKNRQSQPMPAGGPSINPVEQTPQYRENTTGGFAT 151 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 +D++ ++ + FD FL AR+ Y + ++ + I Sbjct: 152 SQDHVPF-------------------NLPSGFDTTAFLQGARDHYHTLQKAWNNNDLTTI 192 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 E+ V ++ + + ++ V D ++ A +++R Sbjct: 193 EEYVSPALFNELKAERADVAD-----VATEVLFLDAELARADSSPILWEVSVRF------ 241 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + ++W R++ SN W+++ + Sbjct: 242 -----KGKYRDLGDTQEEMINEVWHLERDMRQSNAPWLIVGIE 279 >gi|255567254|ref|XP_002524608.1| mitochondrial import inner membrane translocase subunit tim44, putative [Ricinus communis] gi|223536161|gb|EEF37816.1| mitochondrial import inner membrane translocase subunit tim44, putative [Ricinus communis] Length = 486 Score = 90.8 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 25/196 (12%), Positives = 61/196 (31%), Gaps = 6/196 (3%) Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100 S K D R + +++ T ++I F Sbjct: 284 ISEPVVTKSQEIAEDMRERWETSDNPIVHKIQDVSDTIFQETDAAASFKEIRRRDPSFSL 343 Query: 101 KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160 DF+ E + + +++++ +G + ++K S V +S+ + ++ I Sbjct: 344 MDFVAEVQEAVRPVLNAYIKGDLETLKKYCTSEVITRCEAEHKAFQSHGIFFDNKILHIS 403 Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI---- 216 ++++ + + I + Q + D+D + + V W + Sbjct: 404 EVEVRETKMMGTSPIIIVAFQTQQVHCVRDRDGAITEGGQDTIHTVYYAWAMQQVEPEEL 463 Query: 217 --PPSNPNWVLISTKL 230 P W L + Sbjct: 464 GGGAIYPIWKLREMQQ 479 >gi|242051390|ref|XP_002463439.1| hypothetical protein SORBIDRAFT_02g043830 [Sorghum bicolor] gi|241926816|gb|EER99960.1| hypothetical protein SORBIDRAFT_02g043830 [Sorghum bicolor] Length = 474 Score = 90.8 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 63/224 (28%), Gaps = 20/224 (8%) Query: 28 RGVLGKK-TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFP------- 79 R VLG+K + G K V + ++ Sbjct: 245 RTVLGEKWEAFKNKIQGHPVYKRVDEYTKPVVTKGQEVAEDVRERWETSDNPVVQKIQDL 304 Query: 80 -----IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 T R+I F DF+ + + + + ++ ++ +G V ++K V Sbjct: 305 NESLLEETSAAVTFREIRQRDPSFSLSDFVADVQETIKPVLTAYSKGDVETLKKYCTKEV 364 Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNL 194 + S ++ I + ++ + ++ I +R Q I D++ Sbjct: 365 IERCKGEREAYASQGIFFDHKILHISEADVLETKMFGSSPIIILRFQTQQIYCVRDREGQ 424 Query: 195 LISSDPEIFGKVIDIWTFV-------RNIPPSNPNWVLISTKLG 231 + + V W P W L + Sbjct: 425 VTEGGQDTIQTVFYSWAMQLMDSDEVPEEESYYPVWRLREMQQA 468 >gi|325981336|ref|YP_004293738.1| import inner membrane translocase subunit Tim44 [Nitrosomonas sp. AL212] gi|325530855|gb|ADZ25576.1| import inner membrane translocase subunit Tim44 [Nitrosomonas sp. AL212] Length = 285 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 69/229 (30%), Gaps = 31/229 (13%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F ++ D + +L F ++ + +K E+ S +SG ++ + Sbjct: 87 FENINMMDIVTMLLLIGAVFFIIR----MLRKPKVEQSPSMQYSGMNTNTRENFNTPAFT 142 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 P ++ DF + FL A+ S+ + + G Sbjct: 143 PSAGTTVADSQAAHRQP-------------NIPADFKVEPFLRHAKASFMRLQAAHDHGD 189 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 ++ I + + + ++ R ++ + + D ++ + ++R Sbjct: 190 INEIRDYTTPEMLAEISAQINERGDAQQTTEIMFI---DANLLEVETAGDLAIASVRF-- 244 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 L +IW +++ + W+L + Sbjct: 245 ---------TGQLKDLPDSEPEAFDEIWHVQKDLKDPDATWLLAGIQQA 284 >gi|198435825|ref|XP_002124932.1| PREDICTED: similar to translocase of inner mitochondrial membrane 44 homolog [Ciona intestinalis] Length = 431 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 67/176 (38%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + ++ G D + + GT ++KVM +I + +F + FL+ R Sbjct: 246 ESDNVLIRGSRFITDKISGVAGSLFGGTDISKVMTEIARIDPEFSAQGFLDFCRFEIIPN 305 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 ++++ +G + ++ Y + + + + V +D + I A+ + Sbjct: 306 LLEAISQGNENIVKDWCSEAPYNQLMFPVKQAQQIGCRYELTTVDLDHVDIAGATKVDQG 365 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN--PNWVLIS 227 + I Q I +K ++ D + KV +W R++ + W +I Sbjct: 366 PVLVISFQTQQIMVVRNKKGDIVEGDSDQIMKVFHVWALCRDVEEMDRRAAWKIID 421 >gi|212722222|ref|NP_001131676.1| hypothetical protein LOC100193036 [Zea mays] gi|194692218|gb|ACF80193.1| unknown [Zea mays] Length = 474 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 54/191 (28%), Gaps = 7/191 (3%) Query: 48 KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107 K D R + +NE T R+I F DF+ + Sbjct: 278 KGQEVAEDVRERWETSDNPVVQKIQDLNESLLEETSAAVTFREIRQRDPSFSLSDFVADV 337 Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167 + + ++ ++ +G ++ V + S ++ I + ++ Sbjct: 338 QEMIKPVLTAYSKGDAETLKNYCTKEVIERCKGEREAYASQGIFFDHKILHISEADVLET 397 Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV-------RNIPPSN 220 + ++ I +R Q I D++ + + V W Sbjct: 398 KMFGSSPIIILRFQTQQIYCVRDREGQVTEGGQDTIQTVFYSWAMQLMDSDEVPEEESYY 457 Query: 221 PNWVLISTKLG 231 P W L + Sbjct: 458 PVWRLREMQQA 468 >gi|90075058|dbj|BAE87209.1| unnamed protein product [Macaca fascicularis] Length = 453 Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 3/196 (1%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 E + + D + + T +++V+ +I+ V Sbjct: 251 ENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPA 310 Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD FL + N ++++ G++ ++ Y + K+ S + Sbjct: 311 FDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAYPIQQAKALGLQFHSRI 370 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 + ID++ + + E + I Q + + ++ DP+ +++ +W R+ Sbjct: 371 LDIDNIDLAMGKMMEPGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALYRDQ 430 Query: 217 PPSNP--NWVLISTKL 230 NP W L+ Sbjct: 431 DELNPYAAWRLLDISA 446 >gi|281349988|gb|EFB25572.1| hypothetical protein PANDA_010903 [Ailuropoda melanoleuca] Length = 405 Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 62/152 (40%), Gaps = 3/152 (1%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T +++V+ +I+ V FD + FL + N ++++ G++ ++ Y Sbjct: 247 TEMSEVLTEILRVDPAFDKERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 306 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + ++ S ++ ID++ + + E + I Q + + ++ DP Sbjct: 307 PIQQARALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEGDP 366 Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 + +++ +W R+ NP W L+ Sbjct: 367 DKVLRMLYVWALCRDQDELNPYAAWRLLDISA 398 >gi|167579860|ref|ZP_02372734.1| Tim44-like domain family protein [Burkholderia thailandensis TXDOH] Length = 324 Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 62/234 (26%), Gaps = 22/234 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT-----GNEKPFSGFFSGKYVFSKRDER 57 F M + +I L A ++ + G + G + + G + + Sbjct: 105 FASMMANVIVIALLAMAGIWLVRKFMNRRGAQQQPAYAGGQPSLNRDHGGYNQDAGAWRQ 164 Query: 58 GIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117 + G V FD + FL A+ + + + Sbjct: 165 AAPNGAFAGSGSTYAGEAQRVFGGAATAAAPAAAPMVPAGFDTEAFLRNAKVYFVRLQAA 224 Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 + EG + I + + F + + V D +++ + + Sbjct: 225 WDEGNLADIREFTTPEM---FAEVKIDLDGRGAGENQTDVVRLDAELLAVEDRGGEHFAS 281 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 +R ++ + ++W + + W+L + Sbjct: 282 VRFH-----------GMIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQV 321 >gi|329114644|ref|ZP_08243403.1| Import Inner Membrane Translocase Subunit [Acetobacter pomorum DM001] gi|326696124|gb|EGE47806.1| Import Inner Membrane Translocase Subunit [Acetobacter pomorum DM001] Length = 337 Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 69/234 (29%), Gaps = 40/234 (17%) Query: 3 FIKMDSG------DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDE 56 F M S I I ++ + TGN+ S F+ Sbjct: 135 FGGMHSFFSLIGLMIQIAFVVMIVMWLVRRF-------TGNKSSGSSHFA---------- 177 Query: 57 RGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116 N I N ++ + D + F + + I Sbjct: 178 ------MGSGGVANAPGITPGAMPSAGGNASLQINTA-----DYQAF----QQTLMDIQT 222 Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 ++ + + A++++ + FN+ LS S S V + A E + Sbjct: 223 AWNQQNIPAMQQMATPEMVSYFNEQLSALASQGARNVVSDVHFIQGDLAEAWRENGMDFA 282 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 T+ + I + + +I + ++WTF R W+L + + Sbjct: 283 TVAMRYSLIDLTTNATGQVIQGSSTEPVNITELWTFTRP--SRGGRWLLSAIQQ 334 >gi|288959507|ref|YP_003449848.1| hypothetical protein AZL_026660 [Azospirillum sp. B510] gi|288911815|dbj|BAI73304.1| hypothetical protein AZL_026660 [Azospirillum sp. B510] Length = 365 Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 68/221 (30%), Gaps = 13/221 (5%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 ++++F F + R + + + + L + Sbjct: 155 IILVVFLVRLAMRFFRNRS--------QTANTAASGSGPLGGNQPAYAGGPLNRDAADVG 206 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + G R + P DF I ++ V A+ + Sbjct: 207 YNPMGNHGMGGGNAGPAPRRQAADEIGIQPADF-ESFERLLTTIQTAYGREDVEALRGVT 265 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 + ++ F+D L+ ++ K S V + + E Y T+ + I + + Sbjct: 266 TAEMFSYFSDDLAGNRNRGLVNKVSDVRLLQGDLAEGWREGPQEYATVAMRFSLIDVTVE 325 Query: 191 K-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + ++ + + ++WTFVR W L + + Sbjct: 326 RASGRVVEGNASQPTEATELWTFVRQHGGQ---WRLSAIQQ 363 >gi|172061690|ref|YP_001809342.1| import inner membrane translocase subunit Tim44 [Burkholderia ambifaria MC40-6] gi|171994207|gb|ACB65126.1| import inner membrane translocase subunit Tim44 [Burkholderia ambifaria MC40-6] Length = 344 Score = 90.0 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 66/237 (27%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I L A I ++ R + ++ E +S S Sbjct: 124 FASMMANVIVIALLAMIGIWLV---RKFMNRRRSQEPAYSVGGSASSSGGYSQSPSFQQG 180 Query: 63 GKGKKKDNLDSINELFPIG---------TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 G S G + + V FD + FL A+ + Sbjct: 181 STGNNYAGSGSSYANEAQGVFGGGAAAAGAAGAMAAAPLQVPAGFDTEAFLRSAKVYFVR 240 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ +G + I + + F + S + V D +++ Sbjct: 241 LQAAWDQGNLADIREFTTPEM---FAEIKIDLDSRGNEANQTDVVQLDAELVAIEDRGIE 297 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R L+ S + ++W + + W+L + Sbjct: 298 QSASVRFH-----------GLIRESANAPAAPLDEVWNLSK---SGSQGWLLAGIQQ 340 >gi|293609901|ref|ZP_06692203.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828353|gb|EFF86716.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123134|gb|ADY82657.1| hypothetical protein BDGL_002071 [Acinetobacter calcoaceticus PHEA-2] Length = 323 Score = 90.0 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 67/223 (30%), Gaps = 20/223 (8%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 +LL A + FFVF +L KK P++ +G+ F + G + Sbjct: 119 IWVLLAAALAFFVFRKLGS--KKKLAGNNPYAPNSNGQNPFGRSAAPQAAPRNAGDNTNI 176 Query: 71 LDSINELFPIGTRLNKVMRDIV--SVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 + + +P FL AR + I + I + Sbjct: 177 FGQSVGGGAATQAPFGGVTTSNGNQLPDGSEPAAFLRIARQRFNHIQSMNTASNIEEIRR 236 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 + +Y + + + + + +++++ E +++R Sbjct: 237 YLTPELYSSMYNDIMENQDQ----DVAEFSNLNAMVVDSATENGQYVVSVRF-------- 284 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + + +IW FV+ +WV+ + Sbjct: 285 ---TGTVSEDLNSLPQPFTEIWHFVKPAGSQQ-DWVVAGIQQA 323 >gi|115352833|ref|YP_774672.1| import inner membrane translocase subunit Tim44 [Burkholderia ambifaria AMMD] gi|115282821|gb|ABI88338.1| import inner membrane translocase, subunit Tim44 [Burkholderia ambifaria AMMD] Length = 344 Score = 90.0 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 66/237 (27%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I L A I ++ R + ++ E +S S Sbjct: 124 FASMMANVIVIALLAMIGIWLV---RKFMNRRRSQEPAYSVGGSASSSGGYSQSPSFQQG 180 Query: 63 GKGKKKDNLDSINELFPIG---------TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 G S G + + V FD + FL A+ + Sbjct: 181 STGNNYAGSGSSYANEAQGVFGGGAAAAGAAGAMAAAPLQVPAGFDTEAFLRSAKVYFVR 240 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ +G + I + + F + S + V D +++ Sbjct: 241 LQAAWDQGNLADIREFTTPEM---FAEIKIDLDSRGNEANQTDVVQLDAELVAIEDRGIE 297 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R L+ S + ++W + + W+L + Sbjct: 298 QSASVRFH-----------GLIRESANAPAAPLDEVWNLSK---SGSQGWLLAGIQQ 340 >gi|167617935|ref|ZP_02386566.1| Tim44-like domain family protein [Burkholderia thailandensis Bt4] Length = 252 Score = 90.0 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 62/234 (26%), Gaps = 22/234 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT-----GNEKPFSGFFSGKYVFSKRDER 57 F M + +I L A ++ + G + G + + G + + Sbjct: 33 FASMMANVIVIALLAMAGIWLVRKFMNRRGAQQQPAYAGGQPSLNRDHGGYNQDAGAWRQ 92 Query: 58 GIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117 + G V FD + FL A+ + + + Sbjct: 93 AAPNDAFAGSGSTYAGEAQRVFGGAATAAAPAAAPMVPAGFDTEAFLRNAKVYFVRLQAA 152 Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 + EG + I + + F + + V D +++ + + Sbjct: 153 WDEGNLADIREFTTPEM---FAEVKIDLDGRGAGENQTDVVRLDAELLAVEDRGGEHFAS 209 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 +R ++ + ++W + + W+L + Sbjct: 210 VRFH-----------GMIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQV 249 >gi|257140227|ref|ZP_05588489.1| Tim44-like domain-contain protein [Burkholderia thailandensis E264] Length = 324 Score = 90.0 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 62/234 (26%), Gaps = 22/234 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT-----GNEKPFSGFFSGKYVFSKRDER 57 F M + +I L A ++ + G + G + + G + + Sbjct: 105 FASMMANVIVIALLAMAGIWLVRKFMNRRGAQQQPAYAGGQPSLNRDHGGYNQDAGAWRQ 164 Query: 58 GIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117 + G V FD + FL A+ + + + Sbjct: 165 AAPNDAFAGSGSTYAGEAQRVFGGAATAAAPAAAPMVPAGFDTEAFLRNAKVYFVRLQAA 224 Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 + EG + I + + F + + V D +++ + + Sbjct: 225 WDEGNLADIREFTTPEM---FAEVKIDLDGRGAGENQTDVVRLDAELLAVEDRGGEHFAS 281 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 +R ++ + ++W + + W+L + Sbjct: 282 VRFH-----------GMIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQV 321 >gi|83718851|ref|YP_441111.1| Tim44-like domain-contain protein [Burkholderia thailandensis E264] gi|83652676|gb|ABC36739.1| Tim44-like domain family [Burkholderia thailandensis E264] Length = 340 Score = 90.0 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 62/234 (26%), Gaps = 22/234 (9%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT-----GNEKPFSGFFSGKYVFSKRDER 57 F M + +I L A ++ + G + G + + G + + Sbjct: 121 FASMMANVIVIALLAMAGIWLVRKFMNRRGAQQQPAYAGGQPSLNRDHGGYNQDAGAWRQ 180 Query: 58 GIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117 + G V FD + FL A+ + + + Sbjct: 181 AAPNDAFAGSGSTYAGEAQRVFGGAATAAAPAAAPMVPAGFDTEAFLRNAKVYFVRLQAA 240 Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 + EG + I + + F + + V D +++ + + Sbjct: 241 WDEGNLADIREFTTPEM---FAEVKIDLDGRGAGENQTDVVRLDAELLAVEDRGGEHFAS 297 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 +R ++ + ++W + + W+L + Sbjct: 298 VRFH-----------GMIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQV 337 >gi|220905000|ref|YP_002480312.1| import inner membrane translocase subunit Tim44 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869299|gb|ACL49634.1| import inner membrane translocase subunit Tim44 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 308 Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 73/225 (32%), Gaps = 28/225 (12%) Query: 11 FLILLFAFITFF---VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 I+L + F +F + R + S S + + + Sbjct: 109 MDIILIGLLAFLGLKLFARFRN---------RQASATAGAHGQHSGGYSDRMQGMQRESA 159 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 N + G + + + FD +FL A+ +Y + +S+ + + I Sbjct: 160 GGNGWDVLRGDGQGAAAHMAAGPNIPMPEGFDVDEFLRGAKMAYTRLQNSWDKRDMDDIS 219 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 + S V ++ + + + S+ + + + +++ E N Y + Sbjct: 220 QFTSSAV----QHAVREQMEADPSPSSTEILLVNAQLLGVENEGNEQYAQVFFDVLMRE- 274 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 S D + V ++W F+R + +W L + E Sbjct: 275 ---------SPDQQAPSTVREVWHFMRPV--QGGSWKLDGIQQVE 308 >gi|193620416|ref|XP_001947189.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-like [Acyrthosiphon pisum] Length = 409 Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 59/151 (39%), Gaps = 3/151 (1%) Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 ++ V+ ++ V DF +F+ + ++++ + ++ Y+ + Sbjct: 250 NAEMSDVVTELCRVEPDFSLVNFIRQCETDIIPNVLEAIAREDLIILKDWCFEAPYRVLS 309 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199 ++ + ++ + ++ ++ + E+ + I Q I D + L+I D Sbjct: 310 HPVTEHRQKGHQTYCKVLDVHNVDVVTGKLMEHGPVLIISFSAQQIMYIKDVNGLIIEGD 369 Query: 200 PEIFGKVIDIWTFVRNIPPSNP--NWVLIST 228 P +V+ W R++ NP W L+ Sbjct: 370 PHTVIRVMYTWAMCRDVNEVNPRAAWKLLDI 400 >gi|171321552|ref|ZP_02910488.1| import inner membrane translocase subunit Tim44 [Burkholderia ambifaria MEX-5] gi|171093167|gb|EDT38379.1| import inner membrane translocase subunit Tim44 [Burkholderia ambifaria MEX-5] Length = 344 Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 67/237 (28%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I L A I ++ R + ++ E +S S Sbjct: 124 FASMMANVIVIALLAMIGIWLV---RKFMNRRRSQEPAYSVGGSASSSGGYSQSPSFQQG 180 Query: 63 GKGKKKDNLDSINELFPIG---------TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 G S G + + V FD + FL A+ + Sbjct: 181 STGNTYAGSGSSYANEAQGVFGGGAAAAGAAGAMAAAPLQVPAGFDTEAFLRSAKVYFVR 240 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ +G + I + + F + S + + V D +++ Sbjct: 241 LQAAWDQGNLADIREFTTPEM---FAEIKIDLDSRGNDANQTDVVQLDAELVAIEDRGIE 297 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R L+ S + ++W + + W+L + Sbjct: 298 QSASVRFH-----------GLIRESANAPAAPLDEVWNLSK---SGSQGWLLAGIQQ 340 >gi|224085633|ref|XP_002307643.1| predicted protein [Populus trichocarpa] gi|222857092|gb|EEE94639.1| predicted protein [Populus trichocarpa] Length = 485 Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 59/166 (35%), Gaps = 8/166 (4%) Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 +++ + +++I F DF+ E + + +++++ +G + ++K Sbjct: 314 QDVSDSIFQESDAAASIKEIRRRDLSFSLMDFVAEVQEAIRPVLNAYMKGDIETLKKYCT 373 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 S V +++ + ++ I D+++ + + I + Q + D+ Sbjct: 374 SEVINRREAEHKAFEAHGIFFDNKILHISDVEVREIKMMGTSPLIIVAFQTQQVHCIRDQ 433 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNI-------PPSNPNWVLISTKL 230 + + + V W R + P W L+ + Sbjct: 434 NGAITEGGQDTIHTVYYAWAM-RQVDPEELGGGAIYPIWKLMEMQQ 478 >gi|222055934|ref|YP_002538296.1| import inner membrane translocase subunit Tim44 [Geobacter sp. FRC-32] gi|221565223|gb|ACM21195.1| import inner membrane translocase subunit Tim44 [Geobacter sp. FRC-32] Length = 315 Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 66/191 (34%), Gaps = 3/191 (1%) Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100 F K S G G N P+ ++ + +I S+ FD Sbjct: 126 IYRFVKKKREASLATPYGQTGYQAGTVTSFPSGYNSSLPVADTVDSGIANIRSMDASFDE 185 Query: 101 KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160 + F + +++ I ++ + + L+ + + +S + + + + + Sbjct: 186 QRFKDSVMDTFFRIQGAWMNRDLAPVSILLTEEMKNILQEDVSRLLRDRQVNRLENIAVR 245 Query: 161 DMKIINASIEENTVYITIRIVGQFISASYD-KDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 ++I A E +IT I + + D ++S + K + WTF R + + Sbjct: 246 SVEIAEAWQESGQDFITASIYANLLDYTTDDATGAVVSGNRTEPVKFEEYWTFTRPVGAN 305 Query: 220 NPNWVLISTKL 230 W L + Sbjct: 306 --AWRLSAIDQ 314 >gi|291241124|ref|XP_002740467.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-like [Saccoglossus kowalevskii] Length = 457 Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 64/183 (34%), Gaps = 5/183 (2%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + + D + + T +++V+ +I+ + F FL + Sbjct: 272 ESDNAVIRASRVVTDKVSQLLGGVFTKTEMSEVLTEIIKIDPHFSKDKFLRQCESEIIPN 331 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G + ++ + + + S ++ ID ++++ + E Sbjct: 332 ILEAMIRGDLDVLKDWCYEAPFNAIAVPVRQAIALGYKFDSKVLDIDYLELVMGKMMEQG 391 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIST--K 229 + I Q I + + ++ D + +V +W R+ NP W L+ + Sbjct: 392 PVLIISFQTQQIQVVRNAKHEIVEGDEDKVVRVQYVWVLCRDQEELNPDAAWKLLDLSAQ 451 Query: 230 LGE 232 + Sbjct: 452 TAQ 454 >gi|332264171|ref|XP_003281120.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM44 [Nomascus leucogenys] Length = 455 Score = 89.2 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 65/193 (33%), Gaps = 5/193 (2%) Query: 43 GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKD 102 F + + I + D + E T +++V+ +I+ V FD Sbjct: 256 NRFFEMKMKYDESDNAFIRASRALTDKVTDLLGEGSVSKTEMSEVLTEILRVDPAFDKDR 315 Query: 103 FLNEARNSYEAIVDSFFE---GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159 FL + N V G + + + Y + K+ S ++ I Sbjct: 316 FLKQCENDIIPNVLEVGAAPPGPLPGSRSWLHQQTYSQLAHPIQQAKALGLQFHSRILDI 375 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 D++ + + E + I Q + + ++ DP+ +++ +W R+ Sbjct: 376 DNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQDEL 435 Query: 220 NP--NWVLISTKL 230 NP W L+ Sbjct: 436 NPYAAWRLLDISA 448 >gi|94309317|ref|YP_582527.1| import inner membrane translocase, subunit Tim44 [Cupriavidus metallidurans CH34] gi|93353169|gb|ABF07258.1| import inner membrane translocase, subunit Tim44 [Cupriavidus metallidurans CH34] Length = 329 Score = 89.2 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 63/226 (27%), Gaps = 21/226 (9%) Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 S L + A I ++ + R G ++P G TL + Sbjct: 120 SNVILFGVIALIAMWLIRKFR---GGSARTQQPSYAGMGGNGSNYGGPSHAEPTLRTAEP 176 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVS---VYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 N + + G + V DFD + FL A+ Y + ++ G Sbjct: 177 VGNGGAASNPVMGGAAAAATAAAVQQPWGVPADFDTESFLRNAKVHYVRLQAAWDAGNQD 236 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 I + + F + V + V D +++ ++R Sbjct: 237 DIREFTTPEM---FAEIKMDLSERGSEVNKTDVVTLDAQLLGIESTPAQHIASVRF---- 289 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ E ++W + N W+L + Sbjct: 290 -------SGMIREKAGEPAQPFGEVWNLAK-ATSGNGGWLLAGIQQ 327 >gi|158425088|ref|YP_001526380.1| hypothetical protein AZC_3464 [Azorhizobium caulinodans ORS 571] gi|158331977|dbj|BAF89462.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 335 Score = 89.2 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 55/214 (25%), Gaps = 4/214 (1%) Query: 17 AFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINE 76 A I V L LR ++ + S LG Sbjct: 125 ALIAGVVMLALRFFANRRQPAPAGAGYGMARDNGASASGRGPTGPLGGLGGLGAGLGGLG 184 Query: 77 LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136 + + I ++ + + +LV + Sbjct: 185 GGQTQPQPQPQAAPSGPKDELGLKGADFDAFEKLLSDIQAAYSREDRNKLAELVTPEILG 244 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK-DNLL 195 F + L + + V + + A E Y T+ + + D+ L Sbjct: 245 YFEEELRANAERGVRNQVNDVKLLQGDLSEAWREGQFEYATVALRYEARDTMRDRTTGAL 304 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + + + ++WTF+R W L + + Sbjct: 305 AAGSTDAPSQSTEVWTFIRLRGQP---WKLSAIQ 335 >gi|332701192|ref|ZP_08421280.1| import inner membrane translocase subunit Tim44 [Desulfovibrio africanus str. Walvis Bay] gi|332551341|gb|EGJ48385.1| import inner membrane translocase subunit Tim44 [Desulfovibrio africanus str. Walvis Bay] Length = 313 Score = 89.2 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 71/227 (31%), Gaps = 25/227 (11%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 MD IL+FA + F R ++ +E +S ++ E + G Sbjct: 111 MDFLLIGILIFAGVMVF-----RMFAARRQQSE------YSYAGAAQRQAEAPVDQGSWG 159 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + + S F+ +FL A+ Y + S+ + Sbjct: 160 GSQWDKLRSAPASGQANGQADSQARPGSNVPGFNEDEFLRGAKMVYTRLQASWDARDLED 219 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 I + VY + + + ++ + + + +++ + V T+ Sbjct: 220 IREFTSPEVYAEIARQ----AAQDPTPSTTEILLVNARLLEVKQQSAQVLATVYFDVLMR 275 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 DK G+V ++W F+R +W L + E Sbjct: 276 E---DKA-------QNAPGQVREVWHFLRENDDPKSSWKLEGIQQLE 312 >gi|221130340|ref|XP_002162926.1| PREDICTED: similar to translocase of inner mitochondrial membrane 44 [Hydra magnipapillata] Length = 325 Score = 88.8 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 61/182 (33%), Gaps = 5/182 (2%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + +I + L + + + +I + F+ F+ E Sbjct: 140 ESDNVIIRATRVVTNKLSDVFSDVFSQSEQAATIAEITKIDPSFNKDKFIKECEFEIIPT 199 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 +++++ G + ++ V+ + + + +S ++ I D+ ++ A I E Sbjct: 200 VLEAYLRGDIECLQDWCHEGVFSILSTQIKNNSAQGLVNESRILDIRDVDLVMAKIMEQG 259 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN--PNWVLIS--TK 229 + + Q +S D +I + V +W R+ + W ++ + Sbjct: 260 PVLILTFQAQQVSIMKDSKGKIIEGGEDNIESVNYVWAMCRDQSIYDHHSAWRVLELGIQ 319 Query: 230 LG 231 Sbjct: 320 QA 321 >gi|238028618|ref|YP_002912849.1| hypothetical protein bglu_1g30820 [Burkholderia glumae BGR1] gi|237877812|gb|ACR30145.1| Hypothetical protein bglu_1g30820 [Burkholderia glumae BGR1] Length = 348 Score = 88.8 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 68/241 (28%), Gaps = 31/241 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT-------------GNEKPFSGFFSGKY 49 F M + +I L AF ++ +L G++ G + SG ++ Sbjct: 122 FAGMMANLIVIALLAFAGIWLVRKLMN-RGRRQEPAYAGSGASMNRGYDGAASGGYAAGN 180 Query: 50 VFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN 109 + + + + + V FD + F+ A+ Sbjct: 181 ATYSSAPQPASSSNYANEAARVFGGGAAAGAVNDAVGSASAVPQVPAGFDTEAFVRNAKV 240 Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 + + ++ +G + I + + F + S + V D ++ Sbjct: 241 YFVRLQAAWDQGNLADIREFTTPEM---FAEVKIDLDSRGAGKNQTDVVQIDADLLGVEQ 297 Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + ++R ++ + ++W + N W+L + Sbjct: 298 RGSLSEASVRFH-----------GMIRENPGAPAEPFEEVWNLTK---SGNEGWLLAGIQ 343 Query: 230 L 230 Sbjct: 344 Q 344 >gi|134096015|ref|YP_001101090.1| hypothetical protein HEAR2855 [Herminiimonas arsenicoxydans] gi|133739918|emb|CAL62969.1| conserved hypothetical protein; putative exported protein [Herminiimonas arsenicoxydans] Length = 315 Score = 88.8 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 67/232 (28%), Gaps = 23/232 (9%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNE-----KPFSGFFSGKYVFSKRDERG 58 M S ++ LFAF F++ R + K G + F + Sbjct: 101 ASMISTMLMVGLFAFAAMFIY---RMIKAKSAGAQAGNQRNGLQPSFPNNFSEKSSTPEI 157 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + + + + G+ + + DFD + F+ A+ + + ++ Sbjct: 158 GSRIEQPYGQPSALQSAAPLASGSAFGAGIDAANDLPADFDVESFVRNAKTYFIRLQAAW 217 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 + V+ I + ++ + L R + + V + + +I Sbjct: 218 DKADVNDIREFTTPEMFAELKAQLLER---GASENHTDVISLEGIFYGVETVGDDYIASI 274 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + L+ + W + + + WVL + Sbjct: 275 KF-----------TGLINEGAGAPTEPFSEAWNLSKPV-HGDGGWVLAGIQQ 314 >gi|225848621|ref|YP_002728784.1| hypothetical protein SULAZ_0804 [Sulfurihydrogenibium azorense Az-Fu1] gi|225643113|gb|ACN98163.1| conserved hypothetical protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 293 Score = 88.4 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 77/226 (34%), Gaps = 10/226 (4%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 S F L+ I + L G G + + + Sbjct: 76 SSPVFKWLIGGMIFGALLSLLMG-----HGFQFGM-PGLLEILLIIGIVYLIFKIFSRKS 129 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 +++ + + + + + +S + + + LN A+N++ I ++ EG + ++ Sbjct: 130 QQEPVYATPTSSNVPNQPDYYSDSTLSTASYINEELILNLAKNAFIDIQKAWSEGNLSSV 189 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + R+Y N L KS V I + +I++ E + + + I Q Sbjct: 190 RNFLTDRMYLYLNSQLQDLKSKGLRNIIEDVKILNAEIVHVEEEGDNKVVIVEIEAQAKD 249 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + D + ++ D + + W FV NW L + + Sbjct: 250 YTVDSNGNVVEGDKDNPVVFKEYWAFV----GKALNWKLDDIRQVQ 291 >gi|78067527|ref|YP_370296.1| putative transporter [Burkholderia sp. 383] gi|77968272|gb|ABB09652.1| putative transporter [Burkholderia sp. 383] Length = 344 Score = 88.4 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 65/237 (27%), Gaps = 29/237 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M + +I L A + ++ R + ++ E +S S Sbjct: 124 FASMMANVIVIALLAAVGIWLI---RKFMNRRRPQEPAYSVGGSASSSGGYSQSPSFQQG 180 Query: 63 GKGKKKDNLDSINELFPIG---------TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 G G S G + V FD + FL ++ + Sbjct: 181 GTGSNYAGSGSSYANEAQGVFGGGAAATGAAAAAAAAPLQVPAGFDTEAFLRSSKVYFVR 240 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ +G + I + + F + S + V D +++ Sbjct: 241 LQAAWDQGNLADIREFTTPEM---FAEIKIDLDSRGNESNQTDVVQLDAELVAIEDRGIE 297 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R L+ S ++W + + W+L + Sbjct: 298 QSASVRFH-----------GLIRESANASAAPFDEVWNLSK---SGSQGWLLAGIQQ 340 >gi|148224361|ref|NP_001087692.1| translocase of inner mitochondrial membrane 44 [Xenopus laevis] gi|51703695|gb|AAH81090.1| MGC82677 protein [Xenopus laevis] Length = 451 Score = 88.1 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 64/179 (35%), Gaps = 3/179 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + D + + T +++V+ +I+ V +FD FL Sbjct: 266 ESDNAFVRASRTITDKVSDLIGGLFSKTEMSEVLTEILKVDPNFDKDKFLKLCERDIIPN 325 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G + ++ Y + KS S ++ ID++ + + E Sbjct: 326 ILEAMIRGDLDVLKDWCYEATYSQLAHPIQQAKSMGLQFNSRILDIDNIDLAMGKMMEQG 385 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 + I Q + A ++ ++ D + +++ +W R+ NP W L+ Sbjct: 386 PVLIITFQAQLVMAITNQRGDIVEGDQDKVLRMLYVWALCRDQDELNPYAAWRLLDISS 444 >gi|187608373|ref|NP_001120395.1| translocase of inner mitochondrial membrane 44 [Xenopus (Silurana) tropicalis] gi|170284954|gb|AAI61105.1| LOC100145471 protein [Xenopus (Silurana) tropicalis] Length = 441 Score = 88.1 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 63/179 (35%), Gaps = 3/179 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + D + + T +++V+ +I+ V +FD FL Sbjct: 256 ESDNAFVRASRTITDKVSDLIGGLFSKTEMSEVLTEILKVDPNFDKDKFLKLCERDIIPN 315 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G + ++ Y + K+ S ++ ID++ + + E Sbjct: 316 ILEAMIRGDLDVLKDWCYEATYSQLAHPIQQAKAMGLQFNSKILDIDNIDLAMGKMMEQG 375 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 + I Q + ++ ++ D + +++ +W R+ NP W L+ Sbjct: 376 PVLIITFQAQLVMVITNQKGDVVEGDRDKVLRMLYVWALCRDQDELNPYAAWRLLDISS 434 >gi|218460136|ref|ZP_03500227.1| hypothetical protein RetlK5_11796 [Rhizobium etli Kim 5] Length = 121 Score = 88.1 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 6/121 (4%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG------I 59 M S DF+ L F +F QLR VLG++TGNEKP ++ + Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 G+ +D +I+ + GT LN+ +R + F+PK+FLN AR +YE IV ++ Sbjct: 61 RRDATGEDEDRFAAIDAVAAPGTPLNESLRALNKADPSFNPKEFLNGARMAYEMIVMAYA 120 Query: 120 E 120 + Sbjct: 121 D 121 >gi|218887945|ref|YP_002437266.1| import inner membrane translocase subunit Tim44 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758899|gb|ACL09798.1| import inner membrane translocase subunit Tim44 [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 308 Score = 88.1 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 67/223 (30%), Gaps = 28/223 (12%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 +LL A + F+ L+ ++ G S + G + Sbjct: 113 MMDMLLLALVA---FMALKFFAARR--------GSAPAPASASGQPGGMRREADYGAQSG 161 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + + L + FD ++FL A+ +Y + S+ + I + Sbjct: 162 SSAGWDALRNAPAAAADAQPASPGIPEGFDTEEFLRGAKLAYNRLQTSWDRRDLDDIAQF 221 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + +D + + V + +++ + E++ T+ Sbjct: 222 TTPEILKDITQQAQE----DPGPSRTEVLYCNASVLSVTEEKDRSVATVFFDVLMRE--- 274 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + + +V ++W FVR N W L + E Sbjct: 275 -------DAQADAPSQVREVWHFVR---TGNEMWRLDGIQQVE 307 >gi|47214080|emb|CAF95337.1| unnamed protein product [Tetraodon nigroviridis] Length = 223 Score = 88.1 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 2/161 (1%) Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 K+ L E +R I ++F KDF +A+ + + + Sbjct: 20 SKEGLKQRTEQIRQSAASQLAIRKIKDHDSEFSTKDFAEQAQEIFIEAHNCLTNFNKEKL 79 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQF 184 L+ R Y + + + V+S + + S +T+R+ + Sbjct: 80 HSLLTERCYPEMTRGNRYKTIRWRFVESLELPKVVHARCPDMVSKGNLYGQVTVRMHSRQ 139 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 A YD+ L+ + E V++ R++ W L Sbjct: 140 TLAIYDRFGRLMLGNEEQPKDVLEYLVLERHLVNPYGRWRL 180 >gi|289741253|gb|ADD19374.1| mitochondrial import inner membrane translocase subunit TIM44 [Glossina morsitans morsitans] Length = 421 Score = 88.1 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 68/178 (38%), Gaps = 4/178 (2%) Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYE 112 + + D + + T L++ M ++ + +FD K FL + + Sbjct: 234 EESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELCKIDPNFDQKQFLRDCEVDIIP 293 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 I+++ G + ++ Y ++ + + S ++ I+++ ++ + E Sbjct: 294 NILEATVRGDLEILKDWCFESTYNLIATPINQAIKSGLCLDSKILDIENIDLVMGKVMEQ 353 Query: 173 TVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I Q I D+ N ++ DPE +V +W R+ NP W L+ Sbjct: 354 GPVLIITFQAQQIMCLKDRATNKIVEGDPEKVMRVNHVWVLCRDPNELNPKAAWRLLE 411 >gi|114328920|ref|YP_746077.1| transporter [Granulibacter bethesdensis CGDNIH1] gi|114317094|gb|ABI63154.1| transporter [Granulibacter bethesdensis CGDNIH1] Length = 326 Score = 88.1 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 65/221 (29%), Gaps = 24/221 (10%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 I L + F++ + G G+ + D Sbjct: 129 LQIFLIVMVVRFLWRRF-----------------AGGNAPAMAPAGAGMTNPFTTNQTDR 171 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 G + + D + F + + + ++ + + + + Sbjct: 172 GPIGGGQMGGGPMGGRQSSVQPIQLSQGDYQRF----ESLLKEVQAAWTDRNLQQLGSIS 227 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 + FN+ L+ S + + V + + A E Y T+ ++ I A+YD Sbjct: 228 TPEMVGYFNEQLTALASRGLHNTVTNVTLQKGDLSEAWREGTLEYATVAMLFSMIDATYD 287 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++ D + WTFVR W+L + + Sbjct: 288 SSGRVVEGDASQLQTATEFWTFVR---SPGGPWILSAIQQA 325 >gi|58040295|ref|YP_192259.1| putative transmembrane protein [Gluconobacter oxydans 621H] gi|58002709|gb|AAW61603.1| Putative transmembrane protein [Gluconobacter oxydans 621H] Length = 316 Score = 88.1 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 49/167 (29%), Gaps = 6/167 (3%) Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 G + T T+ D F + I ++ + Sbjct: 155 GNRGQRSPMGMPSSAGATPFGNAGGSTPVTLTNDDYLSF----QRLLLDIQAAWSAQNMR 210 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 A+ + + FN LS S S V + A E N Y T+ + Sbjct: 211 ALASMATPEMTGYFNAQLSDLASRGARNIVSNVQFQRGDLSEAWREGNLTYATVAMRYSM 270 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + D +I V ++WTFVR NW+L + + Sbjct: 271 TDVTTDSMGNVIDGSSTEPVTVTELWTFVR--ADGRGNWILSAIQQA 315 >gi|307726779|ref|YP_003909992.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. CCGE1003] gi|307587304|gb|ADN60701.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. CCGE1003] Length = 322 Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 20/229 (8%), Positives = 67/229 (29%), Gaps = 22/229 (9%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 +M S ++ + + + + ++ +P + G S+ + Sbjct: 115 AQMLSNML-LIGLVVVAGVMLFRF--IANRR----RPDLAYGHGAASRSQSNGMPFANQN 167 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 + D+ ++ + + D + + A++ + + ++ + Sbjct: 168 GQARPDSSFFGSQRTAANQTAAAGVFNAPVQPLGLDQAELVASAKSMFMRLQGAWDRNEQ 227 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 + +L + F + + V D +++ + ++++R Sbjct: 228 GDLFELTTPEM---FAQLKRDLEGRGNQPNRTEVPQLDAEVLGVESTADETFVSVRFY-- 282 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + D ++W VR+ N W L + + Sbjct: 283 ---------GQMREDDAPTAQPFQEVWNIVRSAHSGN-TWRLAGIQQLD 321 >gi|89092751|ref|ZP_01165704.1| hypothetical protein MED92_15633 [Oceanospirillum sp. MED92] gi|89083263|gb|EAR62482.1| hypothetical protein MED92_15633 [Oceanospirillum sp. MED92] Length = 294 Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 69/223 (30%), Gaps = 22/223 (9%) Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 + I +FL + ++ + ++P + K ++ Sbjct: 93 FEGIQFMDLLLIAGVIFLIFK-IMSMRRQAQQPTYANNGPQQYEIKPHAEQQQREAAPEQ 151 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 N + + + + F+ + FL A++ + + ++ I Sbjct: 152 DSNFKPMPSF-----NSGWGNSEEFELPSWFNRESFLEGAKSHFVTLQKAWDASNWDEIR 206 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 ++Q + ++ +++ V ++ N +++ V ++I Sbjct: 207 TYTSDELFQALQQERAKYPAD----QTTEVVSVMAEVANFIDQKSEVIVSINFY------ 256 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 L + E + + W R++ N +W ++ + Sbjct: 257 -----GWLKENSEET-TEFNETWHLSRDMSVENADWFIVGIEQ 293 >gi|209542494|ref|YP_002274723.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter diazotrophicus PAl 5] gi|209530171|gb|ACI50108.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter diazotrophicus PAl 5] Length = 320 Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 6/154 (3%) Query: 78 FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD 137 + T D + F + I ++ + + A++ + + Sbjct: 172 PMPAAPYGQGPSADQVTITPDDYRAF----QRLLLDIQAAWSQRNLPALQHMATPEMVGY 227 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197 FN LS S S V + + A E Y T+ + + + D +I Sbjct: 228 FNAQLSDLASRGARNVVSDVRFEQGDLSEAWSENGFDYATVAMRYSMVDITTDMTGRVID 287 Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 V ++WTFVR W+L + + G Sbjct: 288 GSSTERVMVTELWTFVRP--TRGGAWLLSAIQQG 319 >gi|152997235|ref|YP_001342070.1| import inner membrane translocase subunit Tim44 [Marinomonas sp. MWYL1] gi|150838159|gb|ABR72135.1| import inner membrane translocase subunit Tim44 [Marinomonas sp. MWYL1] Length = 289 Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 74/228 (32%), Gaps = 34/228 (14%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F + G I+LFA I F+ + ++ + + +G + R + Sbjct: 94 FDGISFG--DIMLFALI-GFLVYKFFIAPKRRAAAAQAQASGANGMFREMPNSTRDNVQP 150 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 P+ + + + F+ + F+ EA+N Y + ++ + Sbjct: 151 ---------------SPMSGISGFGAQPEIKLPPGFNEQAFVAEAKNHYITLQKAWDDNN 195 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 I V +Y R ++ N + V +++ +T I+++ Sbjct: 196 FDEILDYVSPELYNLLVA---ERATHGDNKPRTEVISLMAELVRGEYIGSTASISLQF-- 250 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + D +IW +N+ +N NW ++ + Sbjct: 251 ---------SGWIKEGDQTS--DTNEIWHLEKNMSDANGNWTIVGIQQ 287 >gi|170584097|ref|XP_001896855.1| Tim44-like domain containing protein [Brugia malayi] gi|158595793|gb|EDP34297.1| Tim44-like domain containing protein [Brugia malayi] Length = 773 Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 23/165 (13%), Positives = 71/165 (43%), Gaps = 4/165 (2%) Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEAIVDSFFEGKVHA 125 + + ++ + + +++V+ +I V +F+ ++L + ++++F G + Sbjct: 599 DESDNLALRLVRGGHSEISEVLSEIQKVDPNFEKNEWLRFCEKEIIPNVLEAFIRGDLKI 658 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEK-NVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 ++ R Y + +++ K S ++ I+ ++++ + E+ I I Sbjct: 659 LKDWCYERAYNILSATVNEYKKINFNTTDSRIIDINRVEMVTGKMMEHGPVIIITFQAYM 718 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 ++ + + ++ DP +V +W R++ NP W ++ Sbjct: 719 VNIVRNMEGKVVEGDPNSPVRVHHVWVMCRDMEEYNPRVAWKVLE 763 >gi|17508985|ref|NP_491780.1| hypothetical protein T09B4.9 [Caenorhabditis elegans] gi|6016367|sp|O02161|TIM44_CAEEL RecName: Full=Probable mitochondrial import inner membrane translocase subunit tim-44; Flags: Precursor gi|2039379|gb|AAB53011.1| Hypothetical protein T09B4.9 [Caenorhabditis elegans] Length = 425 Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 66/160 (41%), Gaps = 4/160 (2%) Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLV 130 + I +F +++V+ +I + +FD +++L I+++F + ++ Sbjct: 256 EKIGSVFSGQNEVSEVLTEIHKIDANFDKQEWLRFCETKIIPNILEAFIRFDLEVLQSWC 315 Query: 131 DSRVYQDFNDSLSTRKSNEK-NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 R Y + + + S ++ I+ +++ + E + I I+ + Sbjct: 316 HERAYTQLSTVVKEYQKMHFSTKDSRIIDINKVEMATGKMMEQGPVLIISFQVYMINVTK 375 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + D ++ DP+ ++ IW R++ NP W L+ Sbjct: 376 NADGKVVEGDPDNPKRINHIWVLCRDVEEYNPALAWKLLE 415 >gi|308499393|ref|XP_003111882.1| hypothetical protein CRE_29458 [Caenorhabditis remanei] gi|308268363|gb|EFP12316.1| hypothetical protein CRE_29458 [Caenorhabditis remanei] Length = 425 Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 69/175 (39%), Gaps = 4/175 (2%) Query: 57 RGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIV 115 + + + I +F +++V+ +I + +FD +++L I+ Sbjct: 241 EESDNIAVRMMRGVTEKIGSVFSGQNEVSEVLTEIHKIDANFDKQEWLRFCETKIIPNIL 300 Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS-NEKNVKSSLVGIDDMKIINASIEENTV 174 ++F + ++ R + + + + + S ++ I+ +++ + E Sbjct: 301 EAFIRFDIEVLQSWCHERAFTQLSTVVKEYQKMHWSTKDSRIIDINKVEMATGKMMEQGP 360 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I I+ + + + ++ DP+ ++ IW R++ NP W L+ Sbjct: 361 VLIISFQVYMINVTKNAEGKVVEGDPDNPKRINHIWVLCRDVEEYNPATAWKLLE 415 >gi|157803805|ref|YP_001492354.1| hypothetical protein A1E_03170 [Rickettsia canadensis str. McKiel] gi|157785068|gb|ABV73569.1| hypothetical protein A1E_03170 [Rickettsia canadensis str. McKiel] Length = 211 Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 81/229 (35%), Gaps = 25/229 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M +L+FA I FF+ +L LG E+ + G+ V + + Sbjct: 1 MSPQIIELLIFALIAFFIINKLITTLGSTAEEEQTKQKSYFGEPVIKDVTYSAVKSNKAE 60 Query: 66 KKKDNLDSINE-----LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 K ++ I + T + M + FDP F+N A+ +++ I+++ ++ Sbjct: 61 KNLPTVEDIKAFQDIIVEQNITAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + +LVD R ++F + K + N ++I + Sbjct: 121 KDTQELSELVDKRYLEEFEKITPSYG------DFFDSSALSAKYSEIYLFGNNIFIKLLF 174 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G+ + + + + WTF RN +W L + + Sbjct: 175 QGKNVV--------------DKIEDLKEEWTFTRNANTKEVDWFLSNIE 209 >gi|77461866|ref|YP_351373.1| import inner membrane translocase, subunit Tim44 [Pseudomonas fluorescens Pf0-1] gi|77385869|gb|ABA77382.1| putative exported protein [Pseudomonas fluorescens Pf0-1] Length = 292 Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 76/228 (33%), Gaps = 34/228 (14%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M F IL+ A I F +F R + ++ ++ F+ + + + Sbjct: 97 FEGMQF--FDILIMAVIAFVIF---RFIAARRRKQQEQFAPAGAPMQREVFEQKPAAM-- 149 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 G+ R +++ F+ + FL AR+ ++A+ + + Sbjct: 150 -------------GSIFGGSAAPAAARPVINAPAWFNEQRFLEAARSHFQALQQHWDANE 196 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + I + V ++ F R +S+ + +++ + T+ G Sbjct: 197 MDKIAEFVTPQM---FEFLKRERAELGDAFQSTYIDNLQVQLDGVDDRADKTIATLTFNG 253 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ +D+ + + W R + P W++ + Sbjct: 254 VSKTSRFDQQGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 290 >gi|162147875|ref|YP_001602336.1| hypothetical protein GDI_2091 [Gluconacetobacter diazotrophicus PAl 5] gi|161786452|emb|CAP56034.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] Length = 324 Score = 87.3 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 6/154 (3%) Query: 78 FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD 137 + T D + F + I ++ + + A++ + + Sbjct: 176 PMPAAPYGQGPSADQVTITPDDYRAF----QRLLLDIQAAWSQRNLPALQHMATPEMVGY 231 Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197 FN LS S S V + + A E Y T+ + + + D +I Sbjct: 232 FNAQLSDLASRGARNVVSDVRFEQGDLSEAWSENGFDYATVAMRYSMVDITTDMTGRVID 291 Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 V ++WTFVR W+L + + G Sbjct: 292 GSSTERVMVTELWTFVRP--TRGGAWLLSAIQQG 323 >gi|303248706|ref|ZP_07334959.1| import inner membrane translocase subunit Tim44 [Desulfovibrio fructosovorans JJ] gi|302489871|gb|EFL49799.1| import inner membrane translocase subunit Tim44 [Desulfovibrio fructosovorans JJ] Length = 303 Score = 87.3 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 65/220 (29%), Gaps = 28/220 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 +L I +FL R LG++ + ++ Sbjct: 111 LLDLILIGGGLFLLFR-FLGRR-------------RMASQSGPSMARTYEASPMREAAGS 156 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 L + +V FD +DFL+ A+ + + S+ V I Sbjct: 157 GWANLGAASSGPQAQAASGPNVPPGFDVEDFLSGAKTLFGRLQRSWSARDVSDIATFATP 216 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 F + + + + + N + + V + D K++ T + Sbjct: 217 A----FMEDVRRQAAEDPNPEPTDVLLVDAKLLEVRKMGETTIASAYFDTLMREDPK--- 269 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + PE V +IW F R NW L + + E Sbjct: 270 ----AGQPEQ---VREIWHFARRDDVPGDNWRLDAIQQLE 302 >gi|256083399|ref|XP_002577932.1| mitochondrial import inner membrane translocase subunit tim44 [Schistosoma mansoni] gi|238663274|emb|CAZ34170.1| mitochondrial import inner membrane translocase subunit tim44, putative [Schistosoma mansoni] Length = 407 Score = 87.3 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 61/164 (37%), Gaps = 3/164 (1%) Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAI 126 D L ++ L +V+ +I+ + F+ + F+ R ++++ G + + Sbjct: 235 TDRLSNLFGGLKSTNDLQQVLDEIIKMDPSFNLESFIRYCRFVVIPNVLEAIVRGDLRIL 294 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 Y L K +S ++ + ++ + + E + I Q I+ Sbjct: 295 HDWCHEVPYNVLATPLKQMKELGYISESRILDVHNVDVQMGKMMEQGPVLIITFQAQQIN 354 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIST 228 DK+ L DP +V ++W R+ NP W ++ Sbjct: 355 CIRDKNGNLHEGDPNKVLRVTNVWALCRDQSEMNPLAAWRVLDI 398 >gi|94986557|ref|YP_594490.1| hypothetical protein LI0112 [Lawsonia intracellularis PHE/MN1-00] gi|94730806|emb|CAJ54168.1| uncharacterized protein conserved in bacteria [Lawsonia intracellularis PHE/MN1-00] Length = 313 Score = 87.3 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 74/221 (33%), Gaps = 19/221 (8%) Query: 12 LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71 ++L A + ++ +L K T NE + I Sbjct: 110 DLILIAGL-VYLAYRLF-FKRKITSNEASVTNSLYA--TQQPLTSEMPIPRSTTLSGTGW 165 Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 +S+ + ++ DF+ ++FL A+ +Y + ++ + I++ Sbjct: 166 ESLKSQHTTYSADVSNQAITTNIPIDFNEEEFLKGAKAAYVRLNAAWDNRDLEDIQQFTT 225 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 + ++ N +++ + + + +++ E+ +++ K Sbjct: 226 PGFLNELQQQITE----NPNPETTEIMLVNASVVDVKKIEDEELVSVYFNVLL------K 275 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +N E +V +IW FVR +W L + E Sbjct: 276 ENQ----SQESPIEVREIWHFVRP-ASGEGSWKLDGIQQVE 311 >gi|67459060|ref|YP_246684.1| hypothetical protein RF_0668 [Rickettsia felis URRWXCal2] gi|67004593|gb|AAY61519.1| unknown [Rickettsia felis URRWXCal2] Length = 211 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 82/229 (35%), Gaps = 25/229 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M +L+FA I F++ +L LG + E+ + G+ V + + + Sbjct: 1 MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSTVKSNKEE 60 Query: 66 KKKDNLDSINE-----LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 K I + T + M + FDP F+N A+ +++ I+++ ++ Sbjct: 61 KNIPTAQDIKAFKDIIVEHNITAVVDGMEQVHKHLYSFDPIKFINNAKTAFQMIIEAAYK 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + +L+D R ++F + + K + N ++I + Sbjct: 121 KDAKELSELIDKRYLEEFEKITPSYG------DFFDLSALSAKYSEIYMFGNNIFIKLLF 174 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G+ + + + + WTF RN +W L + + Sbjct: 175 QGKNVV--------------DKIEDLKEEWTFTRNANTKEVDWFLSNIE 209 >gi|239947276|ref|ZP_04699029.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239921552|gb|EER21576.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 211 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 82/229 (35%), Gaps = 25/229 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M +L+FA I FF+ +L LG + E+ + G+ V + + + Sbjct: 1 MSPQIIELLIFAVIAFFIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSTVKSNKEE 60 Query: 66 KKKDNLDSINE-----LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 K I + T + M + + FDP F+N A+ +++ I+++ ++ Sbjct: 61 KNIPTAQDIKAFKDIIVEHNITAVVDGMEQVHNRLYSFDPVKFINNAKTAFQMIIEAAYK 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + +L+D R ++F + K + N ++I + Sbjct: 121 KDTQELSELIDKRYLEEFEKITPSYG------DFFDSSALSAKYSEIYMFGNNIFIKLLF 174 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G+ + + + + WTF RN +W L + + Sbjct: 175 QGKNVV--------------DKIEDLKEEWTFTRNANAKEVDWFLSNIE 209 >gi|268567730|ref|XP_002640066.1| Hypothetical protein CBG12550 [Caenorhabditis briggsae] gi|187029170|emb|CAP31512.1| hypothetical protein CBG_12550 [Caenorhabditis briggsae AF16] Length = 425 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 69/175 (39%), Gaps = 4/175 (2%) Query: 57 RGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIV 115 + + + I +F +++V+ +I + +FD +++L I+ Sbjct: 241 EESDNIAVRMMRGVTERIGSVFSGQNEVSEVLTEIHKIDANFDKQEWLKFCETKIIPNIL 300 Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS-NEKNVKSSLVGIDDMKIINASIEENTV 174 ++F + ++ R + + + + + S ++ I+ +++ + E Sbjct: 301 EAFIRFDLEVLQSWCHERAFTQLSTVVKEYQKMHWSTKDSRIIDINKVEMATGKMMEQGP 360 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I I+ + + + ++ DP+ ++ IW R++ NP W L+ Sbjct: 361 VLIISFQVYMINVTKNAEGKVVEGDPDNPKRINHIWVLCRDVEEYNPAIAWKLLE 415 >gi|77359903|ref|YP_339478.1| hypothetical protein PSHAa0957 [Pseudoalteromonas haloplanktis TAC125] gi|76874814|emb|CAI86035.1| conserved protein of unknown function; putative membrane protein [Pseudoalteromonas haloplanktis TAC125] Length = 283 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 66/223 (29%), Gaps = 33/223 (14%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 ++L A F + +RG + + S + ++ K Sbjct: 89 GFQLLEMILLAGAAFIILKLVRGFMRARQ----------------SPQLASAGMSQNAFK 132 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + ++ FD FL AR Y + +++ E H + Sbjct: 133 QAPIEHEQTTSTGFANSTAHGDDVPFNLPPGFDTNGFLQGAREHYHTLQNAWNEADYHTM 192 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + + + +F ++ V D +++ A + +++R Sbjct: 193 AEYLSPELVAEFKAEREA-----ITSVATEVMFIDAELVRADTLTDKWQVSVRF------ 241 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + +++IW R + ++ W+++ + Sbjct: 242 -----KGKYRDLADKQEQPILEIWHLER-LTLTDAPWLIVGVE 278 >gi|297744147|emb|CBI37117.3| unnamed protein product [Vitis vinifera] Length = 484 Score = 86.5 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 56/189 (29%), Gaps = 6/189 (3%) Query: 48 KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107 K D R + +NE T ++I F DF++E Sbjct: 289 KGQELAEDVRERWETSDNPVVHKIQDLNESVFGETAAAMSFKEIRRRDPSFSLPDFVSEV 348 Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167 + +++++ +G ++K V + ++ + ++ I D+++ Sbjct: 349 QEVIRPVLNAYIKGDAETLKKYCSPEVIERCKAEHGAYQTMGIIFDNKILHISDVEVRET 408 Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVR------NIPPSNP 221 + + I + Q + D + + V W + P Sbjct: 409 KMMGTSPIIIVAFQTQQVYCVRSADGSIKEGGKDTIHTVYYAWAMQQVDAEELGEGAIYP 468 Query: 222 NWVLISTKL 230 W L + Sbjct: 469 IWRLREMQQ 477 >gi|157825721|ref|YP_001493441.1| hypothetical protein A1C_03235 [Rickettsia akari str. Hartford] gi|157799679|gb|ABV74933.1| hypothetical protein A1C_03235 [Rickettsia akari str. Hartford] Length = 211 Score = 86.5 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 25/229 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M +L+FA I F++ +L LG + E+ + G+ V + + + Sbjct: 1 MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTRQKSYFGEPVIKDVTYSTVKSNKEE 60 Query: 66 KKKDNLDSINE-----LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 K I + T + M + FDP F+N A+ +++ I+++ ++ Sbjct: 61 KNIPTAQDIKAFKDIIVEHNITAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + +L+D R + F + + K + N ++I + Sbjct: 121 KDSKELSELIDKRYLEAFEKIIPSYG------DVFDSSALSAKYSEIYMFGNNIFIKLLF 174 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G+ + + + + WTF RN +W L + + Sbjct: 175 QGKNVV--------------DKIEDLKEEWTFTRNANTKEVDWFLSNIE 209 >gi|225438141|ref|XP_002278528.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 485 Score = 86.5 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 56/189 (29%), Gaps = 6/189 (3%) Query: 48 KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107 K D R + +NE T ++I F DF++E Sbjct: 290 KGQELAEDVRERWETSDNPVVHKIQDLNESVFGETAAAMSFKEIRRRDPSFSLPDFVSEV 349 Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167 + +++++ +G ++K V + ++ + ++ I D+++ Sbjct: 350 QEVIRPVLNAYIKGDAETLKKYCSPEVIERCKAEHGAYQTMGIIFDNKILHISDVEVRET 409 Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVR------NIPPSNP 221 + + I + Q + D + + V W + P Sbjct: 410 KMMGTSPIIIVAFQTQQVYCVRSADGSIKEGGKDTIHTVYYAWAMQQVDAEELGEGAIYP 469 Query: 222 NWVLISTKL 230 W L + Sbjct: 470 IWRLREMQQ 478 >gi|193078111|gb|ABO13052.2| putative membrane protein [Acinetobacter baumannii ATCC 17978] Length = 326 Score = 86.5 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 66/221 (29%), Gaps = 20/221 (9%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 +LL A + FFVF +L KK P++ G+ F + G Sbjct: 126 LWVLLAAAVAFFVFRKLGS--KKKLAANNPYAPNNGGQNPFGRSAAPT--NTGDNTNIFG 181 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + +P FL AR + I + I + + Sbjct: 182 QSVGGGAATQAPFGSATTNSGNQLPDGSEPASFLRVARQRFNHIQSINSASNIEEIRRYL 241 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 +Y + + + + + +++++ E +++R Sbjct: 242 TPELYNSMYNDIMENQDQ----DVAEFSNLNAMVVDSATENGQYIVSVRF---------- 287 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + + +IW FV+ + +WV+ + Sbjct: 288 -TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 326 >gi|312385733|gb|EFR30159.1| hypothetical protein AND_00421 [Anopheles darlingi] Length = 340 Score = 86.5 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 75/200 (37%), Gaps = 3/200 (1%) Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87 RG+L + E+PF +G VF ++ E T+ Sbjct: 86 RGILPPRPWLERPFYISCTG-GVFEPYVPPEGDGRMSAISREGAKQAIEQLEKKTKSMMA 144 Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I S DFD +DF +A++ Y + E + + ++V R Y + +++ + Sbjct: 145 IRKIRSYDEDFDARDFATQAQDIYIQAHQTMCEKNKYKLREIVTERAYPELMHNVADKTI 204 Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 + +KS + + E +T+R Q + A YD+ L+ I Sbjct: 205 RWQFIKSLEPPRVVHARCTDVITKENIFAQVTVRFHSQQLLAIYDRFGRLMHGSETIEKD 264 Query: 206 VIDIWTFVRNIPPSNPNWVL 225 ++ F +++ W L Sbjct: 265 CLEYVVFEKHLANEYGVWRL 284 >gi|169795016|ref|YP_001712809.1| hypothetical protein ABAYE0855 [Acinetobacter baumannii AYE] gi|184159199|ref|YP_001847538.1| hypothetical protein ACICU_02879 [Acinetobacter baumannii ACICU] gi|213158321|ref|YP_002320372.1| hypothetical protein AB57_3049 [Acinetobacter baumannii AB0057] gi|260556495|ref|ZP_05828713.1| conserved hypothetical protein [Acinetobacter baumannii ATCC 19606] gi|301345393|ref|ZP_07226134.1| hypothetical protein AbauAB0_04094 [Acinetobacter baumannii AB056] gi|301511593|ref|ZP_07236830.1| hypothetical protein AbauAB05_08443 [Acinetobacter baumannii AB058] gi|301594787|ref|ZP_07239795.1| hypothetical protein AbauAB059_03222 [Acinetobacter baumannii AB059] gi|332854286|ref|ZP_08435286.1| hypothetical protein HMPREF0021_02869 [Acinetobacter baumannii 6013150] gi|332865662|ref|ZP_08436488.1| hypothetical protein HMPREF0020_00093 [Acinetobacter baumannii 6013113] gi|332876029|ref|ZP_08443815.1| hypothetical protein HMPREF0022_03458 [Acinetobacter baumannii 6014059] gi|169147943|emb|CAM85806.1| conserved hypothetical protein; putative exported protein [Acinetobacter baumannii AYE] gi|183210793|gb|ACC58191.1| uncharacterized protein conserved in bacteria [Acinetobacter baumannii ACICU] gi|213057481|gb|ACJ42383.1| conserved hypothetical protein [Acinetobacter baumannii AB0057] gi|260409754|gb|EEX03054.1| conserved hypothetical protein [Acinetobacter baumannii ATCC 19606] gi|323519143|gb|ADX93524.1| hypothetical protein ABTW07_3101 [Acinetobacter baumannii TCDC-AB0715] gi|332728102|gb|EGJ59491.1| hypothetical protein HMPREF0021_02869 [Acinetobacter baumannii 6013150] gi|332735183|gb|EGJ66263.1| hypothetical protein HMPREF0020_00093 [Acinetobacter baumannii 6013113] gi|332735895|gb|EGJ66936.1| hypothetical protein HMPREF0022_03458 [Acinetobacter baumannii 6014059] Length = 325 Score = 86.5 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 66/221 (29%), Gaps = 20/221 (9%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 +LL A + FFVF +L KK P++ G+ F + G Sbjct: 125 LWVLLAAAVAFFVFRKLGS--KKKLAANNPYAPNNGGQNPFGRSAAPT--NTGDNTNIFG 180 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + +P FL AR + I + I + + Sbjct: 181 QSVGGGAATQAPFGSATTNSGNQLPDGSEPASFLRVARQRFNHIQSINSASNIEEIRRYL 240 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 +Y + + + + + +++++ E +++R Sbjct: 241 TPELYNSMYNDIMENQDQ----DVAEFSNLNAMVVDSATENGQYIVSVRF---------- 286 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + + +IW FV+ + +WV+ + Sbjct: 287 -TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 325 >gi|229586715|ref|YP_002845216.1| hypothetical protein RAF_ORF0564 [Rickettsia africae ESF-5] gi|228021765|gb|ACP53473.1| Unknown [Rickettsia africae ESF-5] Length = 211 Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 25/229 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M +L+FA I F++ +L LG + E+ + G+ V + + + Sbjct: 1 MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSIVKSNKEE 60 Query: 66 KKKDNLDSINE-----LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 K I + T + M + FDP F+N A+ +++ I+++ ++ Sbjct: 61 KNIPTAQDIKAFKDIIVEHNITAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + +L+D R ++F + K + N ++I + Sbjct: 121 KDAKELSELIDKRYLEEFEKITPSYG------DFFDSSTLSAKYSEIYMFGNNIFIKLLF 174 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G+ + + + + WTF RN +W L + + Sbjct: 175 QGKNVV--------------DKIEDLKEEWTFTRNANTKEVDWFLSNIE 209 >gi|152981843|ref|YP_001354800.1| hypothetical protein mma_3110 [Janthinobacterium sp. Marseille] gi|151281920|gb|ABR90330.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 307 Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 66/228 (28%), Gaps = 24/228 (10%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M S ++ L F F++ R + K GN S + + + Sbjct: 102 FASMISTILMVALLGFAAMFIY---RMIKNKSAGNNAQPS------FANGYSAKNSTPDI 152 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 G G + + + DFD + F+ A+ + + ++ + Sbjct: 153 GSGLNQQYQQPSALQSAAPMASGAAYEAVNELPADFDVESFIRNAKTYFIRLQAAWDKAD 212 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 ++ I + + F + + + V + + N +I+ Sbjct: 213 INDIREFTTPEM---FAELKLQLQERGATPNVTDVVTLNGEFYGVETVGNDYIASIKF-- 267 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ +D + W + + N WVL + Sbjct: 268 ---------TGMIREADHAPTEPFSEAWNLSKPVN-GNGGWVLAGIQQ 305 >gi|258542756|ref|YP_003188189.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-01] gi|256633834|dbj|BAH99809.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-01] gi|256636893|dbj|BAI02862.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-03] gi|256639946|dbj|BAI05908.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-07] gi|256643002|dbj|BAI08957.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-22] gi|256646057|dbj|BAI12005.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-26] gi|256649110|dbj|BAI15051.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-32] gi|256652097|dbj|BAI18031.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655154|dbj|BAI21081.1| mitochondrial import inner membrane translocase subunit Tim44 [Acetobacter pasteurianus IFO 3283-12] Length = 323 Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 69/228 (30%), Gaps = 28/228 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M S LI L + F V + + V + + G Sbjct: 121 FGGMHSFFSLIGLMLQVAFVVMIVMWLV-----------------RRFTGNKSSGGSGFS 163 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 N + N ++ + D + F + + I ++ + Sbjct: 164 MGAGGVANSPGVTPGAIPSAGGNAALQINTA-----DYQAF----QQTLMDIQTAWNQQN 214 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + A++++ + FN+ LS S S V + A E + T+ + Sbjct: 215 IAAMQQMATPEMVSYFNEQLSALASQGARNVVSDVHFIQGDLAEAWRENGMDFATVAMRY 274 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 I + + +I + ++WTF R W+L + + Sbjct: 275 SLIDLTTNAMGQVIQGSSTEPVNITELWTFTRP--SRGGRWLLSAIQQ 320 >gi|34580481|ref|ZP_00141961.1| hypothetical protein [Rickettsia sibirica 246] gi|157828477|ref|YP_001494719.1| hypothetical protein A1G_03400 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933195|ref|YP_001649984.1| hypothetical protein RrIowa_0720 [Rickettsia rickettsii str. Iowa] gi|28261866|gb|EAA25370.1| unknown [Rickettsia sibirica 246] gi|157800958|gb|ABV76211.1| hypothetical protein A1G_03400 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908282|gb|ABY72578.1| hypothetical protein RrIowa_0720 [Rickettsia rickettsii str. Iowa] Length = 211 Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 25/229 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M +L+FA I F++ +L LG + E+ + G+ V + + + Sbjct: 1 MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSIVKSNKEE 60 Query: 66 KKKDNLDSINE-----LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 K I + T + M + FDP F+N A+ +++ I+++ ++ Sbjct: 61 KNIPTAQDIKAFKDIIVEHNITAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + +L+D R ++F + K + N ++I + Sbjct: 121 KDAKELSELIDKRYLEEFEKITPSYG------DFFDSSALSAKYSEIYMFGNNIFIKLLF 174 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G+ + + + + WTF RN +W L + + Sbjct: 175 QGKNVV--------------DKIEDLKEEWTFTRNANTKEVDWFLSNIE 209 >gi|254470189|ref|ZP_05083593.1| import inner membrane translocase, subunit Tim44 [Pseudovibrio sp. JE062] gi|211960500|gb|EEA95696.1| import inner membrane translocase, subunit Tim44 [Pseudovibrio sp. JE062] Length = 351 Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 73/228 (32%), Gaps = 15/228 (6%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 +++ A + + L L + + +G + +++ + + Sbjct: 129 LIVQALLIGGGIMLLMRFLRSRQ--QPQAAGAYGHHQQQAQQSQPFTFNDAGAQDAPRRS 186 Query: 73 SINELFPIGTRLNKVMR--------DIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 + + G + + DF + + ++ Sbjct: 187 GSSGIPNTGFGGGQAPQFEEQPVFSTEADDEIGLTADDF-DAFEALLTTVWTAYGSEDYG 245 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 I ++ + F + L SN + + + + A E + Y ++ + + Sbjct: 246 KIREIATPEIMGYFAEELGKAASNGLINEVRDIKLLQGDLTEAWREGDKDYASVAMRYES 305 Query: 185 ISASYDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 I ++ N ++ + ++ + I+IWTF+R NW L + + Sbjct: 306 IDVMRERATNKVVEGNADVPEERIEIWTFIRGAGE---NWQLSAIQQA 350 >gi|326511515|dbj|BAJ91902.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326516904|dbj|BAJ96444.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 481 Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 50/166 (30%) Query: 48 KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107 K D R + INE T R+I F DF+ + Sbjct: 285 KGQEVAEDVRERWETSDHPVVQKIQDINETIFEETATAASFREIRRRDPSFSLSDFIGDV 344 Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167 + + ++ ++ +G + ++K + + S ++ I D + Sbjct: 345 QEMIKPVLTAYSKGDLKTLKKYCTKEILERCEGERKGYASQGIFFDHKILHISDADVRET 404 Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213 + +T I + Q I DK+ + + V W Sbjct: 405 KMLGSTPIILVMFRTQEIHCIRDKEGKVTEGGQDSIRTVYYQWAMQ 450 >gi|262373164|ref|ZP_06066443.1| conserved hypothetical protein [Acinetobacter junii SH205] gi|262313189|gb|EEY94274.1| conserved hypothetical protein [Acinetobacter junii SH205] Length = 322 Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 67/224 (29%), Gaps = 21/224 (9%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 +LL A + FFVF + KK P++ +G+ F + N Sbjct: 117 LWVLLAAAVAFFVFRKF--GAKKKLATANPYAPNNNGQNNFGRPVSPQPTMRQTAGDNTN 174 Query: 71 LDSIN---ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 + + + M + +P FL AR + I V I Sbjct: 175 IFGQSVGGGVATQAPFGGASMSSGNQLPDGTEPAAFLRIARQRFNHIQSVNSASNVEEIR 234 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 + + +Y + ++ + + + ++ E +++R Sbjct: 235 RYLTPELYNSMYSDIM----ANQDQDVAEFSNLNAMVAESTTENGQYVVSVRF------- 283 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + + +IW FV+ + +WV+ + Sbjct: 284 ----TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 322 >gi|90418181|ref|ZP_01226093.1| conserved hypothetical protein with Tim44-like domain [Aurantimonas manganoxydans SI85-9A1] gi|90337853|gb|EAS51504.1| conserved hypothetical protein with Tim44-like domain [Aurantimonas manganoxydans SI85-9A1] Length = 203 Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 60/198 (30%), Gaps = 4/198 (2%) Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93 ++ N P G +E + ++ S L Sbjct: 8 RSRNPSPARANGGGHTERRAYEEPTQPAGNGSFRIPSIGSGAGLGGGSAATGAATAAAEP 67 Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153 L+ + +F A+ + + + LS ++ + Sbjct: 68 SDEIGITDADLDTFEQKLHEVQAAFSREDYAALRTITTPEIMSYLAEELSENATSGRKND 127 Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTF 212 V ++ I A E +T Y ++ + I D+ ++ DP+ + ++WTF Sbjct: 128 VLDVKLEQGDIAEAWREGDTEYASLAMRYSSIDVMRDRTTGEVVEGDPDTPTETTELWTF 187 Query: 213 VRNIPPSNPNWVLISTKL 230 VR+ W L + + Sbjct: 188 VRD---KGGEWKLSAIQE 202 >gi|293603149|ref|ZP_06685582.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292818380|gb|EFF77428.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 252 Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 72/220 (32%), Gaps = 21/220 (9%) Query: 14 LLFAFITF---FVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 LL A + F F+ +LRG G +T + F+G + + R + Sbjct: 44 LLIAAVVFAVMFIIRRLRGA-GPRTATQGAFNGANNAPGQQQQPMWREALKPTAAAAPAA 102 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + P + V DFD +FL +A+ + I + G + + Sbjct: 103 AAAAAPVAPPAVLPKAGEDNNWFVPGDFDTPNFLKQAKEQFVRIQAVWDSGSTDGLRDFL 162 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 + + L+ R + V + + +++ + ++R Sbjct: 163 TDDLITELKPQLAER---GAAPNKTEVVLLNAEMLGIETVSDGHLASVRF---------- 209 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +L S + ++W + +N W+L + Sbjct: 210 -SGMLRESPGAEAFRFEEVWNLFKP---ANGGWLLAGIQQ 245 >gi|330828529|ref|YP_004391481.1| Import inner membrane translocase subunit Tim44 [Aeromonas veronii B565] gi|328803665|gb|AEB48864.1| Import inner membrane translocase, subunit Tim44 [Aeromonas veronii B565] Length = 286 Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 18/185 (9%), Positives = 57/185 (30%), Gaps = 15/185 (8%) Query: 46 SGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLN 105 GK + + + + FD FL Sbjct: 116 KGKVATPQPQQAAYAGYQPPQSAAPQQFEQSNSAPQATGFADSDVPFRLPPGFDMNSFLA 175 Query: 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165 AR+ Y + +++ + + + + V +++ + + + + V D +++ Sbjct: 176 GARDHYRTLQEAWNKNDLEKVREYVSPELFEQLKAERAELTGD----QHTEVMYVDTQLV 231 Query: 166 NASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 A + +++R + ++ + ++W R++ +N W + Sbjct: 232 RADYGSDWAQVSVRF-----------SGRYMDRQEQVEEDIKEVWHLERDLAKNNAPWHI 280 Query: 226 ISTKL 230 + + Sbjct: 281 VGIEQ 285 >gi|238650294|ref|YP_002916146.1| hypothetical protein RPR_00625 [Rickettsia peacockii str. Rustic] gi|238624392|gb|ACR47098.1| hypothetical protein RPR_00625 [Rickettsia peacockii str. Rustic] Length = 211 Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 25/229 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M +L+FA I F++ +L LG + E+ + G+ V + + + Sbjct: 1 MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSIVKSNKEE 60 Query: 66 KKKDNLDSIN-----ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 K I + T + M + FDP F+N A+ +++ I+++ ++ Sbjct: 61 KNIPTAQDIKVFKDIIVEHNITAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + +L+D R ++F + K + N ++I + Sbjct: 121 KDAKELSELIDKRYLEEFEKITPSYG------DFFDSSALSAKYSEIYMFGNNIFIKLLF 174 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G+ + + + + WTF RN +W L + + Sbjct: 175 QGKNVV--------------DKIEDLKEEWTFTRNANTKEVDWFLSNIE 209 >gi|332716434|ref|YP_004443900.1| hypothetical protein AGROH133_11996 [Agrobacterium sp. H13-3] gi|325063119|gb|ADY66809.1| hypothetical protein AGROH133_11996 [Agrobacterium sp. H13-3] Length = 360 Score = 85.8 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 63/230 (27%), Gaps = 13/230 (5%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGN----------EKPFSGFFSGKYVFSKRDERGIITL 62 +L A I V +R ++ G SG + Sbjct: 132 LLQVALIGLLVMFAMRFFASRRQGQPAFGGAGGSQRTDHSGSSFNGGPQAGPSASSFKIP 191 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 G + + + L + + + ++ Sbjct: 192 KIGALAGAAGGAAAATAATAKPVAHANAMSEGDEIGITQSDLEVFQKMLQDVQAAYGAED 251 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + KL + LS ++ V + + A EE Y T+ + Sbjct: 252 YGTLRKLTTPEAMSYLAEELSDNATSGVKNDVRDVTLLQGDVAEAWHEEGQDYATVAMRY 311 Query: 183 QFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 I D+ +I D + + +++WTFVR N NW + + + Sbjct: 312 SAIDIMRDRTSGKVIEGDEQHPSEAVEMWTFVRR--GGNDNWQVAAIQAA 359 >gi|302836449|ref|XP_002949785.1| hypothetical protein VOLCADRAFT_104441 [Volvox carteri f. nagariensis] gi|300265144|gb|EFJ49337.1| hypothetical protein VOLCADRAFT_104441 [Volvox carteri f. nagariensis] Length = 393 Score = 85.8 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 50/131 (38%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 G+ ++ MR+I FD F+ + +V +F + + A+ + + + F Sbjct: 228 TGSEASRAMREIRVRDPAFDMNRFVQSVKLDAPTVVRAFLKHDLEALSQHCGPELLERFA 287 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199 S++ I D++I+ + ++ +I + Q + + DK +I Sbjct: 288 GIFKHFNEQGVFEDPSILFIGDVEIVEVRLMDDDPFIIAQFHCQQLKCTRDKFGNVIDGS 347 Query: 200 PEIFGKVIDIW 210 +V W Sbjct: 348 ANQIQRVYYFW 358 >gi|319784935|ref|YP_004144411.1| import inner membrane translocase subunit Tim44 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170823|gb|ADV14361.1| import inner membrane translocase subunit Tim44 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 327 Score = 85.8 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 71/223 (31%), Gaps = 14/223 (6%) Query: 10 DFLILLFAF-ITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 F LL A I + L +R ++ + + + +G T G+ Sbjct: 117 MFGFLLQALLIGGAIMLAIRFF---RSQSARGPAPALAGAGNAQASRFENRSTAGQQTAG 173 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 G +I D F + + ++F A+ + Sbjct: 174 SFTIPGFGGGSGGGSPAAASEEI--TLAQTDLDAF----QQLLTDVQEAFGREDHAALRR 227 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 V + ++ L+ + + + + I + E+ Y T + + + Sbjct: 228 AVTPEMVSYLSEELADNAQKGLRNEVTDITLLQADIAESWREDERDYATAALRYESRDVT 287 Query: 189 YDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ +++ D + + ++WTFVR NW L + + Sbjct: 288 RERASGKIVAGDDDHPTETTELWTFVRENGS---NWKLSAIQA 327 >gi|217978356|ref|YP_002362503.1| import inner membrane translocase subunit Tim44 [Methylocella silvestris BL2] gi|217503732|gb|ACK51141.1| import inner membrane translocase subunit Tim44 [Methylocella silvestris BL2] Length = 329 Score = 85.8 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 54/196 (27%), Gaps = 2/196 (1%) Query: 37 NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT 96 + + + + + Sbjct: 135 FAMNYFRNRRPAMQGAGYGGAPGAGPFGSNRDNQGYGRPQQGYGAGPFAGAAPGGRQSPL 194 Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 P DF + A+ ++ + ++A+ L + F + L K S Sbjct: 195 QIQPADF-SAFEQRLFAVQKAYSDEDMNALRALSTPEMASYFAEELGENARKGVVNKLSK 253 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRN 215 V + A E N Y ++ + I + D+ L++ DP + +IWTF R Sbjct: 254 VEFLQGDLAEAWSEANGDYASVAMRFSMIDQTLDRATGRLVAGDPSAPQQATEIWTFTRR 313 Query: 216 IPPSNPNWVLISTKLG 231 +W L + Sbjct: 314 SGGGAQDWKLSGIQQA 329 >gi|159185868|ref|NP_356915.2| hypothetical protein Atu3705 [Agrobacterium tumefaciens str. C58] gi|159141002|gb|AAK89700.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 215 Score = 85.8 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 60/200 (30%), Gaps = 7/200 (3%) Query: 33 KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIV 92 ++T + S + + I G + N V Sbjct: 21 QRTDHSGSSFNGGSQAGPSASSFKIPKIGALAGAAGGATAAAAATAKPAPHANAVSEGDE 80 Query: 93 SVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNV 152 T D + F + + + ++ + KL + LS ++ Sbjct: 81 IGITQGDLETF----QKMLQDVQSAYGAEDYGTLRKLTTPEAMSYLAEELSDNATSGVKN 136 Query: 153 KSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWT 211 V + + A EE Y T+ + I D+ +I D + +++WT Sbjct: 137 DVRDVTLLQGDVAEAWHEEGQDYATVAMRYSAIDIMRDRTSGKVIEGDEHKPSEAVEMWT 196 Query: 212 FVRNIPPSNPNWVLISTKLG 231 FVR N NW + + + Sbjct: 197 FVRRPG--NDNWQVAAIQAA 214 >gi|260549298|ref|ZP_05823518.1| import inner membrane translocase subunit Tim44 [Acinetobacter sp. RUH2624] gi|260407704|gb|EEX01177.1| import inner membrane translocase subunit Tim44 [Acinetobacter sp. RUH2624] Length = 328 Score = 85.8 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 69/221 (31%), Gaps = 20/221 (9%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 +LL A + FFVF +L G KK P++ +G+ F + + Sbjct: 128 LWVLLAAAVAFFVFRKLGG--KKKLAANNPYAPNSNGQNTFGRSAAPTNSNDNTNIFGQS 185 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + + +P FL AR + I + I + + Sbjct: 186 VGG--GTATQAPFGGATTSNGNQLPDGSEPASFLRVARQRFNHIQSINSASNIEEIRRYL 243 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 +Y + + + + + +++++ E +++R Sbjct: 244 TPELYNSMYNDIMENQDQ----DVAEFSNLNAMVVDSATENGQYIVSVRF---------- 289 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + + +IW FV+ + +WV+ + Sbjct: 290 -TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 328 >gi|196001245|ref|XP_002110490.1| hypothetical protein TRIADDRAFT_54556 [Trichoplax adhaerens] gi|190586441|gb|EDV26494.1| hypothetical protein TRIADDRAFT_54556 [Trichoplax adhaerens] Length = 473 Score = 85.8 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 22/176 (12%), Positives = 59/176 (33%), Gaps = 3/176 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113 + ++ D L + +++ + +I + +F + FL + + Sbjct: 277 ESDNVVIRATRVVTDRLSDAFSGIFSPSEMSQTLAEISKIDPNFSKEKFLLHFQHRIMPS 336 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 ++++F G + ++ Y + + + ++ + D+ I A I E Sbjct: 337 VLEAFLRGDLPILKDWCHESAYSVLEARIKQLTGMGRKLDFKVLDVRDIDIAMAKIMEQG 396 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + + Q I D ++ D V +W R+ + W ++ Sbjct: 397 PVLVMTFQAQQILVLRDSSGKVVEGDENHIENVQYVWAMCRDQSIYDAHSAWRVLE 452 >gi|42569661|ref|NP_181151.3| ATTIM44-2; protein-transmembrane transporting ATPase [Arabidopsis thaliana] gi|53828527|gb|AAU94373.1| At2g36070 [Arabidopsis thaliana] gi|330254108|gb|AEC09202.1| translocase inner membrane subunit 44-2 [Arabidopsis thaliana] Length = 469 Score = 85.8 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 58/193 (30%), Gaps = 6/193 (3%) Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100 S K D R + +NE T ++I F Sbjct: 267 MSEPVVNKSQEIAEDVREKWETSDNPIVHKIQDMNERIFEETGSASTYKEIRRRDPSFSL 326 Query: 101 KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160 DF++E + + +++++ +G ++K + + S L+ + Sbjct: 327 PDFVSEIQEAIRPVLNAYSKGDAKTLKKYCSKELIERCTAEHRAFTSQGYFFDHKLLHVS 386 Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVR----NI 216 ++ I + T I +R Q I D+D + + V W + + Sbjct: 387 EVDIQETKMMGTTPVIIVRFQTQEIFCVRDQDGKIKEGGQDTIHTVYYDWAMQQVDAAEL 446 Query: 217 PPS--NPNWVLIS 227 P W L Sbjct: 447 GEDAIYPIWRLRE 459 >gi|126642670|ref|YP_001085654.1| hypothetical protein A1S_2635 [Acinetobacter baumannii ATCC 17978] Length = 291 Score = 85.8 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 66/221 (29%), Gaps = 20/221 (9%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 +LL A + FFVF +L KK P++ G+ F + G Sbjct: 91 LWVLLAAAVAFFVFRKLGS--KKKLAANNPYAPNNGGQNPFGRSAAPT--NTGDNTNIFG 146 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + +P FL AR + I + I + + Sbjct: 147 QSVGGGAATQAPFGSATTNSGNQLPDGSEPASFLRVARQRFNHIQSINSASNIEEIRRYL 206 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 +Y + + + + + +++++ E +++R Sbjct: 207 TPELYNSMYNDIMENQDQ----DVAEFSNLNAMVVDSATENGQYIVSVRF---------- 252 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + + +IW FV+ + +WV+ + Sbjct: 253 -TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 291 >gi|324512642|gb|ADY45230.1| Import inner membrane translocase subunit tim-44 [Ascaris suum] Length = 465 Score = 85.4 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 63/160 (39%), Gaps = 4/160 (2%) Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN-SYEAIVDSFFEGKVHAIEKLV 130 D I +F + +++V+ +I + FD ++L ++++F G + ++ Sbjct: 296 DRITSVFTTKSEVSEVLTEIAKIDPSFDKVEWLRFCEREVIPNVLEAFIRGDLKILQDWC 355 Query: 131 DSRVYQDFNDSLSTRKSNEK-NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 R Y + K S ++ I +++++ + + + I I+ Sbjct: 356 HERAYNALAAVVKEYKKVNFSTADSRVIDISKVEMVSGKMMDQGPVLIITFQAFMINVVK 415 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + + ++ D +V +W R++ NP W L+ Sbjct: 416 NLEGKVVQGDENNPVRVHHVWVMCRDMEEYNPAVAWKLLE 455 >gi|15892527|ref|NP_360241.1| hypothetical protein RC0604 [Rickettsia conorii str. Malish 7] gi|15619688|gb|AAL03142.1| unknown [Rickettsia conorii str. Malish 7] Length = 211 Score = 85.4 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 81/229 (35%), Gaps = 25/229 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M +L+FA I F++ +L LG + E+ + G+ + + + + Sbjct: 1 MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPIIKDVTYSIVKSNKEE 60 Query: 66 KKKDNLDSINE-----LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 K I + T + M + FDP F+N A+ +++ I+++ ++ Sbjct: 61 KNIPTAQDIKAFKDIIVEHNITAIVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + +L+D R ++F + K + N ++I + Sbjct: 121 KDAKELSELIDKRYLEEFEKITPSYG------DFFDSSALSAKYSEIYMFGNNIFIKLLF 174 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G+ + + + + WTF RN +W L + + Sbjct: 175 QGKNVV--------------DKIEDLKEEWTFTRNANTKEVDWFLSNIE 209 >gi|145352217|ref|XP_001420450.1| MPT family transporter: inner membrane translocase (import) Tim44 [Ostreococcus lucimarinus CCE9901] gi|144580684|gb|ABO98743.1| MPT family transporter: inner membrane translocase (import) Tim44 [Ostreococcus lucimarinus CCE9901] Length = 286 Score = 85.4 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 67/200 (33%), Gaps = 10/200 (5%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 E K D R + + T + R I Sbjct: 76 EGLKKTAPYAKGAELAEDMRERWETSDSPVVHRIQDFQDNLFSETEQGEAYRMIRQRDPM 135 Query: 98 FDPKDFLNEARNSYEAIVDSFFEGKVHAIE-KLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 F+ DF+ E R ++ ++ +G V A++ + S + + + ++ K ++V + Sbjct: 136 FNINDFIAEVRRDIPKVLGAYLKGDVEALKQTNISSEMLERLSGQMNLWKHEGQHVDPRI 195 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV--- 213 + + +++++ + EN + + Q I+ DK ++ + V +W Sbjct: 196 LDLSEVELMEVRLMENEPLVVLTFSCQQINCVRDKSGAVVEGAEDDIQSVHYLWAMQLVD 255 Query: 214 RNIPPSN------PNWVLIS 227 + + P W L Sbjct: 256 KEYTTKDGRKYTKPTWALRE 275 >gi|307822898|ref|ZP_07653128.1| import inner membrane translocase subunit Tim44 [Methylobacter tundripaludum SV96] gi|307735673|gb|EFO06520.1| import inner membrane translocase subunit Tim44 [Methylobacter tundripaludum SV96] Length = 319 Score = 85.4 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 71/238 (29%), Gaps = 28/238 (11%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F ++ D L+F I F ++ + KK G + + + Sbjct: 101 FQGINFTDM--LIFGGIAFLLY---KWFAAKKAGAAQRPVYNRTADNSYQDTASSDHEPE 155 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVS--------VYTDFDPKDFLNEARNSYEAI 114 D+ + + V DFD + FL+ A+ ++ + Sbjct: 156 PTQANPAGFDTDILFKKDNNATPSYAQPVQQDAGFASAVVPKDFDQQAFLSGAKIAFTEL 215 Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174 ++ E + I L +V+ + D L + + + + + +++ + + Sbjct: 216 QKAWDERDLAEIRGLTTDKVFAEIQDQLKASDAANR----TEILRLEAELLEVREVGSEL 271 Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + +V ++W F++ P W L + E Sbjct: 272 EAVVLFDTIMR-----------EDGNAQAAQVREVWHFIKPKVSIQPKWYLDGIQQLE 318 >gi|311103718|ref|YP_003976571.1| Tim44-like domain-containing protein [Achromobacter xylosoxidans A8] gi|310758407|gb|ADP13856.1| Tim44-like domain protein [Achromobacter xylosoxidans A8] Length = 334 Score = 85.0 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 73/220 (33%), Gaps = 21/220 (9%) Query: 14 LLFAFITF---FVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 LL A + F F+ +LRG G +T + F+G + + R + Sbjct: 126 LLIAAVVFAVMFIIRRLRGA-GPRTATQGAFNGSNNTPGQQQQPMWRESLKPAAPAAAAA 184 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + + V DFD +FL +A++ + I + G + + + Sbjct: 185 VAAPVAAAAPAAMPKAGDDNNWFVPGDFDTPNFLKQAKDQFVRIQAVWDSGSTDGLREFL 244 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 + + L+ R + V + + +++ + ++R Sbjct: 245 TDDLITELKPQLAER---GAAPNKTEVVLLNAEMLGIETVSDGHLASVRF---------- 291 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +L + + ++W + +N W+L + Sbjct: 292 -SGMLREAPGAEAFRFEEVWNLFKP---ANGGWLLAGIQQ 327 >gi|159479570|ref|XP_001697863.1| mitochondrial inner membrane translocase [Chlamydomonas reinhardtii] gi|158273961|gb|EDO99746.1| mitochondrial inner membrane translocase [Chlamydomonas reinhardtii] Length = 264 Score = 85.0 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 50/131 (38%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 G+ ++ MR+I FD F+ + +V +F + + + + + + F Sbjct: 99 TGSEASRAMREIRVRDQAFDMNRFVQSVKLDAPVVVKAFLKHDLDTLSQHCGPELMERFA 158 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199 S++ I D++I+ + ++ +I + Q + + DK ++ D Sbjct: 159 GIFKHFNEQGLFEDPSILFIGDVEIVEVRLMDDDPFIIAQFHCQQLKCTRDKFGNVVDGD 218 Query: 200 PEIFGKVIDIW 210 +V W Sbjct: 219 ANTIQRVYYFW 229 >gi|104784399|ref|YP_610897.1| hypothetical protein PSEEN5505 [Pseudomonas entomophila L48] gi|95113386|emb|CAK18114.1| conserved hypothetical protein; putative signal peptide [Pseudomonas entomophila L48] Length = 281 Score = 85.0 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 28/229 (12%), Positives = 71/229 (31%), Gaps = 32/229 (13%) Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61 +F+ IL F + FL R + ++ + + Y + + Sbjct: 83 MFMGDGFEGMQILDFLLMGLIAFLVFRFIAARRRQQQPQHAAAGHAPYQREAQPQAAPQP 142 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 + G V +++ F+ FL AR+ ++++ + Sbjct: 143 IFGG-----------------SAAPVASPVINAPAWFNEASFLAAARSHFQSLQQHWDAN 185 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 ++ I + V ++ R + +S+ + D+++ + T+ Sbjct: 186 EMDKIAEFVTPQMLDFLK---RERAEEGEGFQSTYIDDLDVQLEGVDDRADKTIATLTFR 242 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D + + W R + P W+L + Sbjct: 243 GVSKTSRFD-QGEV----------FNESWHMERAQGENQP-WLLAGIRQ 279 >gi|307311318|ref|ZP_07590961.1| import inner membrane translocase subunit Tim44 [Sinorhizobium meliloti BL225C] gi|307318851|ref|ZP_07598283.1| import inner membrane translocase subunit Tim44 [Sinorhizobium meliloti AK83] gi|306895572|gb|EFN26326.1| import inner membrane translocase subunit Tim44 [Sinorhizobium meliloti AK83] gi|306899619|gb|EFN30247.1| import inner membrane translocase subunit Tim44 [Sinorhizobium meliloti BL225C] Length = 337 Score = 85.0 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 25/211 (11%), Positives = 58/211 (27%), Gaps = 12/211 (5%) Query: 23 VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82 + ++ G ++ P + S R Sbjct: 137 LAMRFFG-RNQRPAYSAPSASGRSSAATAGSPSFRIPRIGEGTGGAGAASLATRSSAAAP 195 Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 V L+ + ++ A+ +L + L Sbjct: 196 ASGNGDEITVGQED-------LDRFEAMLRDVQAAYGAEDYAALRRLTTPEAMSYLAEEL 248 Query: 143 STRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK-DNLLISSDPE 201 S + + V + + A E + Y T+ + + + D+ ++S D + Sbjct: 249 SDNATKGLKNEVRDVHLVQGDLAEAWKENGSDYATVAMRYESVDVVRDRATGRVVSGDAD 308 Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + ++IWTF R +W + + + E Sbjct: 309 RPTEAVEIWTFQRK---PGADWQVSAIQGVE 336 >gi|326796036|ref|YP_004313856.1| import inner membrane translocase subunit Tim44 [Marinomonas mediterranea MMB-1] gi|326546800|gb|ADZ92020.1| import inner membrane translocase subunit Tim44 [Marinomonas mediterranea MMB-1] Length = 284 Score = 84.6 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 76/228 (33%), Gaps = 39/228 (17%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F + G ILLFA I F+ + KR + Sbjct: 94 FDGISFG--DILLFALI-GFLIYKFF--------------------IAPKKRAAQQAQAA 130 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 G G ++ + P+ + + + F+ + F+ EA+N Y A+ ++ + Sbjct: 131 GHGAYREMPQDSFQPSPMAGGAGFGGQPEIQLPPGFNEQAFVAEAKNHYIALQKAWDDSN 190 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 I++ V +Y + R + + V + ++ +T I+++ Sbjct: 191 FETIQEYVSPELYNMLKE---ERAKLGADKPKTDVVSLMVDLVRGEFIGSTASISLQF-- 245 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + + +IW +N+ ++ +WV++ + Sbjct: 246 ---------SGWIKEGSETS--ETKEIWHLEKNMSDASSSWVIVGIQQ 282 >gi|15965783|ref|NP_386136.1| putative transmembrane protein [Sinorhizobium meliloti 1021] gi|15075052|emb|CAC46609.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021] Length = 276 Score = 84.6 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 25/211 (11%), Positives = 58/211 (27%), Gaps = 12/211 (5%) Query: 23 VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82 + ++ G ++ P + S R Sbjct: 76 LAMRFFG-RNQRPAYSAPSASGRSSAATAGSPSFRIPRIGEGTGGAGAASLATRSSAAAP 134 Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 V L+ + ++ A+ +L + L Sbjct: 135 ASGNGDEITVGQED-------LDRFEAMLRDVQAAYGAEDYAALRRLTTPEAMSYLAEEL 187 Query: 143 STRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK-DNLLISSDPE 201 S + + V + + A E + Y T+ + + + D+ ++S D + Sbjct: 188 SDNATKGLKNEVRDVHLVQGDLAEAWKENGSDYATVAMRYESVDVVRDRATGRVVSGDAD 247 Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + ++IWTF R +W + + + E Sbjct: 248 RPTEAVEIWTFQRK---PGADWQVSAIQGVE 275 >gi|300313191|ref|YP_003777283.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gi|300075976|gb|ADJ65375.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 317 Score = 84.6 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 61/227 (26%), Gaps = 16/227 (7%) Query: 6 MDSGDFLILLFAFI-TFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK 64 M +L A + +FL G++ N P +G Sbjct: 106 MGGLLGSLLTIALLCAAVIFLIRMFARGREAQNNNPAYATPMPGVSPIGSAAGATPEIGS 165 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 G + N + G + FD F+ A+ + + ++ V+ Sbjct: 166 GLRDINPPPALQGNAYGAAAQPAQIQQWGIPEGFDTAGFVRNAKTYFIRLQAAWDRADVN 225 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 I + + F + ++ V D +++ T+R Sbjct: 226 DIREFTTPEM---FAELRMQLTERGAAPNATDVVQLDAQLLGIETMAFDYLATVRFQ--- 279 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 L+ + +IW + + S WVL + Sbjct: 280 --------GLIKEAPDVSAEPFAEIWNLSKPLNGSGG-WVLAGIQQV 317 >gi|126308283|ref|XP_001372116.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 310 Score = 84.6 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 51/160 (31%), Gaps = 2/160 (1%) Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 K L E G +R + DF K F +A+ + + Sbjct: 101 SKAGLQQKTEKLKQGVASQLAIRKVREYDADFRTKTFPEKAQQIFVEAHQCLNTSDHDRL 160 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQF 184 LV R + + + + + V+S + S +T+R+ + Sbjct: 161 HALVTERCFPEMVWDIQLKTVHWNFVESLEPPRVVHVRCPNMVSEGNIYGQVTVRMHTRQ 220 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 A YD+ L+ ++ V++ F R++ W Sbjct: 221 TLAIYDRFGRLMYGQEDVPKDVLEYVVFERHLTNPYGAWR 260 >gi|296476478|gb|DAA18593.1| 39S ribosomal protein L45, mitochondrial precursor [Bos taurus] Length = 306 Score = 84.6 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 52/171 (30%), Gaps = 2/171 (1%) Query: 56 ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115 K+ L E +R I +F KDF +A++ + Sbjct: 90 PPEGDARVSSLSKEGLAQRTERLKKNVASQLSIRRIKESDPNFKVKDFPEKAQDIFIEAH 149 Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENT 173 + LV + D + + V+S + + Sbjct: 150 LCLNNSDHDRLHTLVTENCFPDMVWDIKYKTVRWSFVESLEPPQVVQVRCSSLVTKSNAY 209 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 +T+R+ + A YD+ L+ ++ V++ F +++ +W Sbjct: 210 GQVTVRMHTRQTLAIYDRFGRLMYGQEDVPRDVLEYVVFEKHLANPYGSWR 260 >gi|296115092|ref|ZP_06833734.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter hansenii ATCC 23769] gi|295978429|gb|EFG85165.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter hansenii ATCC 23769] Length = 325 Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 48/133 (36%), Gaps = 6/133 (4%) Query: 99 DPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG 158 D + F + + + ++ + + A++ + + F+ L+ S S V Sbjct: 197 DYQAF----QQALVNVQAAWSQQNLGALQHMATPEMVSYFSHQLTDLASRGARNVVSDVR 252 Query: 159 IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP 218 ++ + + E Y T+ + I + D +I V ++WTF R Sbjct: 253 FENGDLTESWQENGMDYATVAMRYSLIDMTTDMTGHVIDGSSTERTVVTELWTFER--SS 310 Query: 219 SNPNWVLISTKLG 231 W++ + + Sbjct: 311 RGGTWLVSAIQQV 323 >gi|296532615|ref|ZP_06895317.1| import inner membrane translocase, subunit Tim44 [Roseomonas cervicalis ATCC 49957] gi|296267060|gb|EFH12983.1| import inner membrane translocase, subunit Tim44 [Roseomonas cervicalis ATCC 49957] Length = 243 Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 7/178 (3%) Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 R + + G + T D + F Sbjct: 72 RSRQPAMAGGPREGMGMAREAQPAPRPMMGGGGGAATQPIQVTQADYQAF----EALLRD 127 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I ++ + +L + F L + ++S V ++ + A E + Sbjct: 128 INAAWSRRDEAGLARLATPEMASYFAQDLRDLDARGWRNETSDVRLEQGDLSEAWREADG 187 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 Y T+ + + +YD ++ DP ++WTF R W L + + Sbjct: 188 DYATVAMRFSLVDVTYDTQGRVVEGDPATRSTATELWTFRRRRGGP---WQLSAIQQA 242 >gi|117619732|ref|YP_855556.1| import inner membrane translocase, subunit Tim44 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561139|gb|ABK38087.1| import inner membrane translocase, subunit Tim44 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 284 Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 17/182 (9%), Positives = 55/182 (30%), Gaps = 15/182 (8%) Query: 49 YVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR 108 + + + + + + FD FL AR Sbjct: 117 KMAAPQQQTAYAGYQPPQSAAPQQFEQNHSAPQATGFADSDVPFRLPPGFDMNGFLAGAR 176 Query: 109 NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS 168 + Y + +++ + + + + V +++ + + + V D +++ A Sbjct: 177 DHYRTLQEAWNKNDLEKVREYVSPELFEQLKAERAELTGE----QHTEVMYVDTQLVRAD 232 Query: 169 IEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + +++R + ++ + ++W RN+ N W ++ Sbjct: 233 YGSDWAQVSVRF-----------SGRYMDRQEQVEEDIKEVWHLERNLAKDNAPWHIVGI 281 Query: 229 KL 230 + Sbjct: 282 EQ 283 >gi|18043288|gb|AAH20130.1| Mitochondrial ribosomal protein L45 [Mus musculus] Length = 306 Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 53/171 (30%), Gaps = 2/171 (1%) Query: 56 ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115 K+ L E +R I T+F KDF +A++ + Sbjct: 90 PPEGDARMSSLSKEGLTQRTERLRKNAASQLAIRKIREFDTNFKTKDFPEKAKDIFIEAH 149 Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENT 173 + LV + D L + V+S + + Sbjct: 150 LCLNNSDHDRLHTLVTEHCFPDMVWDLKYKTVRWGFVESLEPAQVVHVRCSGLVNQSNMY 209 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 +T+R+ + A YD+ L+ ++ V++ F R++ +W Sbjct: 210 GQVTVRLHTRQTLAIYDRFGRLMYGQEDVPKDVLEYVVFERHLMNPYGSWR 260 >gi|13385418|ref|NP_080203.1| 39S ribosomal protein L45, mitochondrial precursor [Mus musculus] gi|29611870|sp|Q9D0Q7|RM45_MOUSE RecName: Full=39S ribosomal protein L45, mitochondrial; Short=L45mt; Short=MRP-L45; Flags: Precursor gi|12847109|dbj|BAB27440.1| unnamed protein product [Mus musculus] gi|26349471|dbj|BAC38375.1| unnamed protein product [Mus musculus] gi|74180509|dbj|BAE34190.1| unnamed protein product [Mus musculus] gi|123209263|emb|CAM26393.1| mitochondrial ribosomal protein L45 [Mus musculus] gi|123258869|emb|CAM27000.1| mitochondrial ribosomal protein L45 [Mus musculus] gi|148684129|gb|EDL16076.1| mitochondrial ribosomal protein L45 [Mus musculus] Length = 306 Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 2/171 (1%) Query: 56 ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115 K+ L E +R I +F KDF +A++ + Sbjct: 90 PPEGDARMSSLSKEGLTQRTERLRKNAASQLAIRKIREFDANFKTKDFPEKAKDIFIEAH 149 Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENT 173 + LV + D L + V+S + + Sbjct: 150 LCLNNSDHDRLHTLVTEHCFPDMVWDLKYKTVRWGFVESLEPAQVVHVRCSGLVNQSNMY 209 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 +T+R+ + A YD+ L+ ++ V++ F R++ +W Sbjct: 210 GQVTVRLHTRQTLAIYDRFGRLMYGQEDVPKDVLEYVVFERHLMNPYGSWR 260 >gi|209884542|ref|YP_002288399.1| import inner membrane translocase, subunit Tim44 [Oligotropha carboxidovorans OM5] gi|209872738|gb|ACI92534.1| import inner membrane translocase, subunit Tim44 [Oligotropha carboxidovorans OM5] Length = 320 Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 62/224 (27%), Gaps = 31/224 (13%) Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 + +++ + FF+ ++ Sbjct: 125 ASVLGLIVQLALVFFLVRLAMSWWARR----------------------NAPAYADNAPP 162 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 + N G T D + F + ++ A++ Sbjct: 163 QANPGQAQNYARTGFGFGAGRNAPPLEITPADYEAF----ERRLSEVQAAWSNEDTAALQ 218 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 + + + L+ + K S V + + A E T Y T+ + + Sbjct: 219 TIATPEMASYLSQDLADNAARGVVNKVSDVKLLQGDLAEAWREGPTDYATVAMRFSLVDK 278 Query: 188 SYDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + D+ ++ + +V +IWTF R + +W L + + Sbjct: 279 TIDRASGRVVEGS-DTPEEVTEIWTFARR---PDTDWELSAIQQ 318 >gi|302773644|ref|XP_002970239.1| hypothetical protein SELMODRAFT_441105 [Selaginella moellendorffii] gi|300161755|gb|EFJ28369.1| hypothetical protein SELMODRAFT_441105 [Selaginella moellendorffii] Length = 257 Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 9/149 (6%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 + + + ++ K F EA + Y+ I G + + +LV + + + R++ Sbjct: 105 LAKLRKKHKGYNQKVFYREATDLYKEINKLSAAGDLGKLRRLVTEHFFSVIKNQIKQRQA 164 Query: 148 NEKNVKSSLVGIDDMK---------IINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 V +VG + I ++ V IT+RI I A+YDK+N +I Sbjct: 165 AYSRVHWEMVGQIKLMRTLQGRLIGIDRKDLDNAFVQITLRIQSNQIFAAYDKNNNIIKG 224 Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 D E V DIW F +++ + W L Sbjct: 225 DLEKPLLVEDIWIFEKHLTRPDSTWRLCG 253 >gi|330993425|ref|ZP_08317360.1| hypothetical protein SXCC_03323 [Gluconacetobacter sp. SXCC-1] gi|329759455|gb|EGG75964.1| hypothetical protein SXCC_03323 [Gluconacetobacter sp. SXCC-1] Length = 324 Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 69/218 (31%), Gaps = 36/218 (16%) Query: 14 LLFAFITFFVF-LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 L+ + FF+ +R G+ GN Sbjct: 139 LIQLALVFFIVRWAIRRFSGRAAGN------------------TVSSPFSPGAAPVGGGS 180 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + P+G + D + F + + I ++ + V A++ + Sbjct: 181 ARGGGQPVGVAITAA-----------DYQAF----QQALINIQTAWSQQNVAAMQHMATP 225 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 + FN+ LS S S + + ++ + E Y T+ + I + D Sbjct: 226 EMVSYFNNQLSELASRGARNVVSDIRFERGDLVESWRENGMDYATVAMQYSMIDITTDMT 285 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +I DP V ++WTFVR W+L + + Sbjct: 286 GRVIDGDPANRTTVAELWTFVRAAGT--GTWLLSAIQQ 321 >gi|260830091|ref|XP_002609995.1| hypothetical protein BRAFLDRAFT_247571 [Branchiostoma floridae] gi|229295357|gb|EEN66005.1| hypothetical protein BRAFLDRAFT_247571 [Branchiostoma floridae] Length = 257 Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 66/181 (36%), Gaps = 8/181 (4%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + ++ D + + T +++V+ +I+ V F + FL + Sbjct: 67 ESDNVVVRASRLITDKVGDLVGGLFSKTEMSEVLTEIIKVDPSFTKEAFLKQCETDIIPN 126 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQD-----FNDSLSTRKSNEKNVKSSLVGIDDMKIINAS 168 I+++ G + ++ V + S K+ + S ++ ID++ + Sbjct: 127 ILEAMIRGDLEILKDWCFEAVSNHDQKLHASSCQSQGKALGCHFDSKILDIDNLDLATGK 186 Query: 169 IEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLI 226 + E + I Q I + + DP KVI +W R+ +P +W L+ Sbjct: 187 VMEQGPVLVISFTAQQIMVVRNAKGEVTEGDPNKVLKVIYVWALCRDQEEFDPRASWKLM 246 Query: 227 S 227 Sbjct: 247 D 247 >gi|17987012|ref|NP_539646.1| transporter [Brucella melitensis bv. 1 str. 16M] gi|17982665|gb|AAL51910.1| transporter [Brucella melitensis bv. 1 str. 16M] Length = 197 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 54/200 (27%), Gaps = 8/200 (4%) Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93 + +G + + + + F V+ D Sbjct: 5 RRQTAAAGAGHAGAQPFGASQPFGSAKSASGQGSFSGRTPSVNPFETKQAAAPVVEDEPM 64 Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153 D F I + A+ KL + L S K + Sbjct: 65 DVGQEDLDRF----EQMLVDIQGGYGREDYAALRKLTTPEAMSYLAEELGEIASGGKRNE 120 Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTF 212 V + + A E N Y T+ + I D+ ++ +P + +++WTF Sbjct: 121 VKDVKLLQGDVSEAWREGNVEYATVAMRYSAIDVMVDRTSGAVVEGNPNEPVESVELWTF 180 Query: 213 VRNIPPSNPNWVLISTKLGE 232 R W L + + E Sbjct: 181 TR---TDGGAWQLAAIQGTE 197 >gi|12847837|dbj|BAB27727.1| unnamed protein product [Mus musculus] Length = 284 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 2/171 (1%) Query: 56 ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115 K+ L E +R I +F KDF +A++ + Sbjct: 95 PPEGDARMSSLSKEGLTQRTERLRKNAASQLAIRKIREFEANFKTKDFPEKAKDIFIEAH 154 Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENT 173 + LV + D L + V+S + + Sbjct: 155 LCLNNSDHDRLHTLVTEHCFPDMVWDLKYKTVRWGFVESLEPAQVVHVRCSGLVNQSNMY 214 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 +T+R+ + A YD+ L+ ++ V++ F R++ +W Sbjct: 215 GQVTVRLHTRQTLAIYDRFGRLMYGQEDVPKDVLEYVVFERHLMNPYGSWR 265 >gi|168047419|ref|XP_001776168.1| predicted protein [Physcomitrella patens subsp. patens] gi|162672543|gb|EDQ59079.1| predicted protein [Physcomitrella patens subsp. patens] Length = 354 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 58/190 (30%), Gaps = 6/190 (3%) Query: 48 KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107 K D R + +NE T MR+I F DFL E Sbjct: 159 KGQELAEDIRERWETSDSPVVHRIQDLNESIFGETATAVAMREIRRHDPSFTFSDFLAEV 218 Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167 + + ++ +G + K V + +S + + ++ I D++I Sbjct: 219 QEEIRPTLRAYLKGDFATLRKKCSREVVERCQAERRALESQGIFLDNEILHISDVEIKET 278 Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTF------VRNIPPSNP 221 + N I I Q I + +KD +I + V W N + Sbjct: 279 KLLGNAPIIIINFQTQQIHCARNKDGNIIEGARDDIHTVFYAWAMQQESPEETNRGEFHT 338 Query: 222 NWVLISTKLG 231 W L + Sbjct: 339 RWKLREMQQA 348 >gi|302790822|ref|XP_002977178.1| hypothetical protein SELMODRAFT_176052 [Selaginella moellendorffii] gi|300155154|gb|EFJ21787.1| hypothetical protein SELMODRAFT_176052 [Selaginella moellendorffii] Length = 432 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 52/157 (33%), Gaps = 6/157 (3%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 T ++I S F DF+ E + I+ ++ +G + K V V + Sbjct: 269 GETATAAAFKEIRSRDPTFSFPDFVLEVQEDIRPILTAYLKGDYDTLRKKVCKEVVERCR 328 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199 +S V + ++ I ++++ + + N I I Q D+ + Sbjct: 329 AEHRALQSQGLYVDTKILYISELEVRESKLIGNEPVIIISFQTQQNYCVRDEFGHIREGS 388 Query: 200 PEIFGKVIDIWTFVR------NIPPSNPNWVLISTKL 230 + ++ W + + P W L + Sbjct: 389 KDDIRTILYAWAMQQVSLDEMDPDEFTPRWRLREMQQ 425 >gi|118785408|ref|XP_314650.3| AGAP008539-PA [Anopheles gambiae str. PEST] gi|116127723|gb|EAA10193.3| AGAP008539-PA [Anopheles gambiae str. PEST] Length = 418 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 57/178 (32%), Gaps = 4/178 (2%) Query: 52 SKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNS- 110 + + D + + T L+ + ++ + F+ K FL Sbjct: 229 QYDESENVAIRTSRALTDKVSQVMGNLFSKTELSAALTEVCRIDPSFEAKQFLQFCERHV 288 Query: 111 YEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE 170 +++S G++ + Y + +S L+ I+++++ + Sbjct: 289 IPNVLESILRGELDVLRDWCFESAYSVIATPIVQGLEAGCRFESKLLDIENVELAMGQVM 348 Query: 171 ENTVYITIRIVGQFISASYDKDN-LLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225 E + + Q I + +I DPE + W R+ NP W + Sbjct: 349 EQGPVLIVTFQAQQIVCVREGTGAAVIEGDPEKVFRCHHAWVLCRDPSELNPQAAWRI 406 >gi|260459996|ref|ZP_05808249.1| import inner membrane translocase subunit Tim44 [Mesorhizobium opportunistum WSM2075] gi|259034207|gb|EEW35465.1| import inner membrane translocase subunit Tim44 [Mesorhizobium opportunistum WSM2075] Length = 326 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 68/224 (30%), Gaps = 16/224 (7%) Query: 10 DFLILLFAF-ITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68 F LL A I + L +R ++ + + + +G S+ + R Sbjct: 117 MFGFLLQALLIGGAIMLAIRFF---RSQSARGPALAGAGNAQASRFENRATSPQQSAGSF 173 Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 D + L+ + + ++F A+ + Sbjct: 174 TIPDFGGGSGGGSPAGGSDEITLAQSD--------LDAFQQLLTDVQEAFGREDHAALRR 225 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 + ++ L+ + S + + I + E++ Y T + + Sbjct: 226 ATTPEMVSYLSEELADNAQKGLRNEVSDITLLQADIAESWREDDRDYATAALRYESRDVM 285 Query: 189 YDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++ + D + + ++WTF+R NW L + + Sbjct: 286 RERASGKAVEGDDDHPTETTELWTFMRENGS---NWKLSAIQQA 326 >gi|255086703|ref|XP_002509318.1| mitochondrial protein translocase family [Micromonas sp. RCC299] gi|226524596|gb|ACO70576.1| mitochondrial protein translocase family [Micromonas sp. RCC299] Length = 415 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 71/211 (33%), Gaps = 16/211 (7%) Query: 29 GVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVM 88 V K G ++ + + + R+ T D F T + Sbjct: 198 SVFSKLEGLKQTPAYKKGEEMLEDARERW--ETSDNPMVHRIQDITEGAFFAETEQAEAY 255 Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL-VDSRVYQDFNDSLSTRKS 147 R + DF+ F+ E R ++ ++ +G V A+E+ V + + + + Sbjct: 256 RVLQQRVPDFNMNGFIAEVRRDVPKVLGAYLKGDVEALERCAVSKEMLERMGGQMKLWQH 315 Query: 148 NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 + V ++ + +M+++ +N I ++ Q I+ +KD ++ + V Sbjct: 316 EGQFVDPRILHLSEMELVEVRTLDNAPMIVLQFSCQQINCVRNKDGEIVEGAEDDIQSVH 375 Query: 208 DIWTFV-----------RNIPPSNPNWVLIS 227 +W R P W L Sbjct: 376 YLWAMQLEDVEYTHSDGRKYTA--PTWQLRE 404 >gi|87122174|ref|ZP_01078057.1| hypothetical protein MED121_05298 [Marinomonas sp. MED121] gi|86162494|gb|EAQ63776.1| hypothetical protein MED121_05298 [Marinomonas sp. MED121] Length = 281 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 66/224 (29%), Gaps = 39/224 (17%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 ILLFA + F+ + + + ++ + + Sbjct: 95 GFAFGDILLFALV-GFLIYKF----------------------FIAPKRQQAAANNAQFR 131 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + DS + K + + DF+ F+ EA+N Y A+ ++ E I Sbjct: 132 QMPGADSFQQAPNASANPFKAQDPAMQLPPDFNQAAFVAEAKNHYTALQKAWDENDFTEI 191 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 V + R + + + V D+++ + G S Sbjct: 192 ADYVTPELLAMLQA---ERANYGADKPKTEVISLDVEL-----------VRGEFQGSISS 237 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + + E + W +N+ + NW ++ + Sbjct: 238 ITLKFSGWIKEG--EDTSDSTEYWHLEKNMSQQSSNWTIVGIQQ 279 >gi|115523579|ref|YP_780490.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisA53] gi|115517526|gb|ABJ05510.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisA53] Length = 329 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 23/184 (12%), Positives = 52/184 (28%), Gaps = 8/184 (4%) Query: 48 KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107 + + + G + + D + F Sbjct: 154 QRRNANANAAAYAGPASGPEIGPGPQASHRNAASGFGFGGASPAPLEIGPADYEAF---- 209 Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167 I +++ +G + + L + F L K+ K S V + + + Sbjct: 210 ERLLGEIQETWSKGDIGHLHMLATPEMVSYFTSDLDANKARGVVNKVSDVKLLQGDLAES 269 Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 E T Y T+ + + + D ++ + + ++WTF R W L + Sbjct: 270 WREGETDYATVAMRFSLVDKTTDASGAIVEGS-DQPIEATEVWTFARRQGSD---WELSA 325 Query: 228 TKLG 231 + Sbjct: 326 IQQV 329 >gi|323529253|ref|YP_004231405.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. CCGE1001] gi|323386255|gb|ADX58345.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. CCGE1001] Length = 322 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 66/228 (28%), Gaps = 22/228 (9%) Query: 5 KMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK 64 +M S LI L +F R + ++ +P + G S+ + + Sbjct: 116 QMLSNLLLIGLVVMAGVMLF---RFIANRR----RPDLAYGHGAANRSQGNGSPFLNQTG 168 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 + D+ + D + + A++ + + ++ + Sbjct: 169 HARSDSHFFGTQRAATNPAGAAGAFSAPVQPLGVDQAELVVSAKSLFMRLQAAWDRNEQG 228 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 + +L + F + + V + +++ + ++++R Sbjct: 229 DLFELTTPEM---FAQLKRDLEDRGSQPNRTEVPQLEAEVLGVQSTADETFVSVRFY--- 282 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + D ++W VR+ + W L + + Sbjct: 283 --------GQMREDDAPTAQPFQEVWNMVRSARGGDA-WRLAGIQQLD 321 >gi|254504893|ref|ZP_05117044.1| Tim44-like domain family [Labrenzia alexandrii DFL-11] gi|222440964|gb|EEE47643.1| Tim44-like domain family [Labrenzia alexandrii DFL-11] Length = 335 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 65/218 (29%), Gaps = 20/218 (9%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 +++ F + R +G F + + + Sbjct: 134 LIVLLVSLAMRFFRSR------------QQPATAGPNPFERAPNQPAPDQNASQATPFSF 181 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 ++ T D F + + ++ A+ +L Sbjct: 182 GGGGASGSTSQTFDQPATQPYEATAADLDRF----EDMLSEVQSAYASEDYAALRQLATP 237 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 + L S K S V + + + E Y+T+ + + +D Sbjct: 238 EAMSYLAEELGELASAGKKNVVSDVKLLQGDVAESWNENGNDYVTVAMRYSAVDYIAKRD 297 Query: 193 N-LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + +IS DP+ + ++WTFVR S +W+L + + Sbjct: 298 SHEVISGDPDAPSESTEVWTFVR---SSGGDWLLSAIQ 332 >gi|297827085|ref|XP_002881425.1| attim44-2 [Arabidopsis lyrata subsp. lyrata] gi|297327264|gb|EFH57684.1| attim44-2 [Arabidopsis lyrata subsp. lyrata] Length = 469 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 26/193 (13%), Positives = 57/193 (29%), Gaps = 6/193 (3%) Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100 S K D + +NE T ++I F Sbjct: 267 MSEPVVNKSQEIAEDVMEKWETSDNPIVHKIQDMNEKIFEETGSASTYKEIRRRDPSFSL 326 Query: 101 KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160 DF E + + +++++ +G ++K + + +S+ L+ + Sbjct: 327 PDFAVEIQEAIRPVLNAYSKGDAETLKKYCSKELIERCTAEHRAFQSHGYFFDHKLLHVS 386 Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS- 219 +++I + + I +R Q I D++ + + V W + Sbjct: 387 EVEIKETKMMGTSPVIIVRFQTQEIFCVRDQNGNIKEGGQDTIHTVYYDWAMQQVEAAEL 446 Query: 220 -----NPNWVLIS 227 P W L Sbjct: 447 GEDAIYPIWRLRE 459 >gi|157131210|ref|XP_001655824.1| mitochondrial ribosomal protein, L45, putative [Aedes aegypti] gi|108871608|gb|EAT35833.1| mitochondrial ribosomal protein, L45, putative [Aedes aegypti] Length = 334 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 75/200 (37%), Gaps = 3/200 (1%) Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87 RG+L + E+PF +G VF K+ EL T+ Sbjct: 84 RGILPPRPWMERPFYISCTG-GVFEPYVPPEGDGKMSAVSKEGAKQKFELLEKKTKSMMA 142 Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I S DF+P +F +A+ Y + E + + +++ R Y + +++ + Sbjct: 143 VRKIRSFDDDFEPPEFAAQAQEIYIQAHNLLMEKNKYKLREIITERAYPEMMHNVTDKTI 202 Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 K +KS + S + +T+R Q I A YD+ L+ + Sbjct: 203 RWKFLKSLEPPRVVHARCTDVISKDNIFGQVTVRFHTQQILAIYDRFGRLMHGSEIVEKD 262 Query: 206 VIDIWTFVRNIPPSNPNWVL 225 ++ F +++ W L Sbjct: 263 CLEYVVFEKHLSNEYGVWRL 282 >gi|258405234|ref|YP_003197976.1| import inner membrane translocase subunit Tim44 [Desulfohalobium retbaense DSM 5692] gi|257797461|gb|ACV68398.1| import inner membrane translocase subunit Tim44 [Desulfohalobium retbaense DSM 5692] Length = 298 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 70/210 (33%), Gaps = 25/210 (11%) Query: 21 FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPI 80 F ++L G + P S + S D + + Sbjct: 109 VFFVVRLFKGRGTR----GPSSKSPPRQDQRSAPDRFDT-------AAAGWEHLRSKPAG 157 Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 G + + S+ DFD ++FL A+ Y+ + +++ + + I V+++ Sbjct: 158 GPPPPEPTDEEESIPQDFDTQEFLKGAKIVYQRLQEAWDDRDLEDIRGFTTPEVFREIRR 217 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + N + + + ++ N + ++++ + D Sbjct: 218 QAKE----DPNTSQTEIVLLQAEVRNVRRDGAVTHVSVAFEALLRESPQD---------- 263 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +V ++W F R+ S+ +W+L + Sbjct: 264 SETRQVRELWHFQRDESRSDSHWLLEGLEQ 293 >gi|91206049|ref|YP_538404.1| hypothetical protein RBE_1234 [Rickettsia bellii RML369-C] gi|157826585|ref|YP_001495649.1| hypothetical protein A1I_01080 [Rickettsia bellii OSU 85-389] gi|91069593|gb|ABE05315.1| unknown [Rickettsia bellii RML369-C] gi|157801889|gb|ABV78612.1| hypothetical protein A1I_01080 [Rickettsia bellii OSU 85-389] Length = 211 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 25/229 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M +L+FA I FF+ +L LG + ++ + G+ V + + Sbjct: 1 MSPQIIELLIFAGIAFFIINKLITTLGATSDDDPAKQKSYFGEPVIKDVTHSSNKSYEEE 60 Query: 66 KKKDNLDSINE-----LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 K I + T + M + F P F+N A+ +++ I+++ ++ Sbjct: 61 KDLPTAQDIKTFKNLIVEQNITAVVDGMETVHKRLNAFQPIKFINNAKIAFQMIIEAAYK 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + + +LVD R ++F + + K N ++I + Sbjct: 121 NQTEELAELVDKRFLEEFEKISDSYG------NFFDSTALNAKYSEIYTFGNNIFIKLLF 174 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G+ + + ++ + WTF RN +W L + + Sbjct: 175 QGKNVV--------------DKIEELKEEWTFTRNANTKEVDWFLSNIE 209 >gi|145300179|ref|YP_001143020.1| import inner membrane translocase [Aeromonas salmonicida subsp. salmonicida A449] gi|142852951|gb|ABO91272.1| predicted import inner membrane translocase [Aeromonas salmonicida subsp. salmonicida A449] Length = 280 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 18/187 (9%), Positives = 53/187 (28%), Gaps = 15/187 (8%) Query: 44 FFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDF 103 K + + + FD F Sbjct: 108 RAMRKSKAPSPQPQTAYAGYQPPSATPQQFEQSSSASQATGFADSDVPFRLPPGFDMNSF 167 Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163 L+ AR+ Y + +++ + + + V +++ + + + V D + Sbjct: 168 LSGARDHYRTLQEAWNTNDLEKVREYVSPELFEQLKAERAELTGE----QHTEVMYVDTQ 223 Query: 164 IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223 ++ A + +++R + ++ + ++W RN+ N W Sbjct: 224 LVRADYGSDWAQVSVRF-----------SGRYMDRQEQVEEDIKEVWHLERNLAKDNAPW 272 Query: 224 VLISTKL 230 ++ + Sbjct: 273 HIVGIEQ 279 >gi|316958066|gb|EFV47264.1| conserved hypothetical protein [Trichinella spiralis] Length = 168 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 55/148 (37%), Gaps = 3/148 (2%) Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 +++V+ +I + +FD DF + + + ++++ G+ + + Sbjct: 11 SVSEVLTEICKIDPNFDVTDFRKQCQRDFIPNVIEASNRGEEEILRDWCSEGAFNQLIAL 70 Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201 LS K L ID+++II I + + + + + D + + Sbjct: 71 LSECKRAGYKHTFRLFDIDNVEIITGKITDMGPVLLVAFQTRQLRCIQTPDGKFVFGTTD 130 Query: 202 IFGKVIDIWTFVRNIPPSN--PNWVLIS 227 + +W F R++ N W ++ Sbjct: 131 DPLLITHLWAFCRDVDEPNSKAAWRVVD 158 >gi|170699198|ref|ZP_02890251.1| import inner membrane translocase subunit Tim44 [Burkholderia ambifaria IOP40-10] gi|170135923|gb|EDT04198.1| import inner membrane translocase subunit Tim44 [Burkholderia ambifaria IOP40-10] Length = 218 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 67/234 (28%), Gaps = 29/234 (12%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M + +I L A I ++ R + ++ E +S S S G Sbjct: 1 MMANVIVIALLAMIGIWLV---RKFMNRRRSQEPAYSVGGSASSSGSYSQSPSFQQGSTG 57 Query: 66 KKKDNLDSINELFPIG---------TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116 S G + + V FD + FL A+ + + Sbjct: 58 NNYAGSGSSYANEAQGVFGGGAAAAGAAGAMAGAPLQVPAGFDTEAFLRSAKVYFVRLQA 117 Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 ++ +G + I + + F + S + + V D +++ Sbjct: 118 AWDQGNLADIREFTTPEM---FAEIKIDLDSRGNDANQTDVVQLDAELVAIEDRGIEQSA 174 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R L+ S + ++W + + W+L + Sbjct: 175 SVRFH-----------GLIRESANAPAAPLDEVWNLSK---SGSQGWLLAGIQQ 214 >gi|302793266|ref|XP_002978398.1| hypothetical protein SELMODRAFT_418250 [Selaginella moellendorffii] gi|300153747|gb|EFJ20384.1| hypothetical protein SELMODRAFT_418250 [Selaginella moellendorffii] Length = 260 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 9/149 (6%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 + + + ++ K F EA + Y+ I G + + +LV + + + R++ Sbjct: 108 LAKLRKKHKGYNQKVFYREATDLYKEINKLSAAGDLGKLRRLVTEHFFSVIKNQIKQRQA 167 Query: 148 NEKNVKSSLVGIDDMK---------IINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 V +VG + I ++ V IT+RI I A+YDK+N +I Sbjct: 168 AYSRVHWEMVGQIKLMRTLQGRLIGIDRKDLDNAFVQITLRIQSNQIFAAYDKNNNIIKG 227 Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 D E V DIW F +++ + W L Sbjct: 228 DLEKPLLVEDIWIFEKHLTRPDSTWRLCG 256 >gi|241258750|ref|YP_002978634.1| import inner membrane translocase subunit Tim44 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863220|gb|ACS60883.1| import inner membrane translocase subunit Tim44 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 331 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 65/218 (29%), Gaps = 20/218 (9%) Query: 16 FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 A I V L +R ++ + S + + I T+G G N Sbjct: 129 IALIGGAVMLAMRYFANRRQPSYGVGGQSRSYNMSPTNKSSFQIPTIGSGGGFGGQSRGN 188 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 L++ + ++ + +L Sbjct: 189 RPSDEIGLAQAD----------------LDQFEELLTQVQTAYGAEDYGTLRRLTTLEAM 232 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NL 194 + L +N + S V + I A E+ Y T+ + I A ++D Sbjct: 233 SYLAEELGENATNGVRNRVSDVKLLQGDIAEAWREDGQEYATLAMRYSSIDAMVERDSGR 292 Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ++S D + ++WTFVR W L + + E Sbjct: 293 VVSGDDRRPSESTEVWTFVRKSGAD---WKLAAIQGAE 327 >gi|83320119|ref|NP_001030272.1| 39S ribosomal protein L45, mitochondrial precursor [Bos taurus] gi|88932615|sp|Q3T142|RM45_BOVIN RecName: Full=39S ribosomal protein L45, mitochondrial; Short=L45mt; Short=MRP-L45; Flags: Precursor gi|74267993|gb|AAI02137.1| Mitochondrial ribosomal protein L45 [Bos taurus] Length = 306 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 53/171 (30%), Gaps = 2/171 (1%) Query: 56 ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115 K+ L E +R I +F KDF +A++ + Sbjct: 90 PPEGDARVSSLSKEGLAQRTERLKKNVASQLSIRRIKESDPNFKVKDFPEKAQDIFIEAH 149 Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENT 173 + LV + D + + + V+S + + Sbjct: 150 LCLNNSDHDRLHTLVTENCFPDMVWDIKYKTVSWSFVESLEPPQVVQVRCSSLVTKSNTY 209 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 +T+R+ + A YD+ L+ ++ V++ F +++ +W Sbjct: 210 GQVTVRMHTRQTLAIYDRFGRLMYGQEDVPRDVLEYVVFEKHLANPYGSWR 260 >gi|182677331|ref|YP_001831477.1| import inner membrane translocase subunit Tim44 [Beijerinckia indica subsp. indica ATCC 9039] gi|182633214|gb|ACB93988.1| import inner membrane translocase subunit Tim44 [Beijerinckia indica subsp. indica ATCC 9039] Length = 321 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 63/221 (28%), Gaps = 21/221 (9%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 L +FL + V+G ++P +G G Sbjct: 119 MSFLGLLVQIGLLFLLFKLVMGFLRNRQQPAYQGADQGGQAPGNQPQGGNFGFGGGPGPG 178 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 +N+ D F AI SF ++ + L Sbjct: 179 RAGVNDQPLPIETA--------------DYTAF----EQKLAAIQSSFSNEDLNGLRLLT 220 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS-ASY 189 + F + ++ + K S V + + A E N Y T+ + Sbjct: 221 TPEMASYFAEEIAGNATKGFVNKISDVKLLQGDVAEAWREANGEYATVAMRFSLTDRMIE 280 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++S +V +IWTF R + + +W L + + Sbjct: 281 RASGRIVSGG--TPEQVTEIWTFFRPLGATPADWKLAAIQQ 319 >gi|169632671|ref|YP_001706407.1| hypothetical protein ABSDF0845 [Acinetobacter baumannii SDF] gi|169151463|emb|CAP00212.1| conserved hypothetical protein; putative exported protein [Acinetobacter baumannii] Length = 326 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 67/221 (30%), Gaps = 20/221 (9%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 +LL A +TFFVF +L KK P++ G+ F + G Sbjct: 126 LWVLLAAAVTFFVFRKLGS--KKKLAANNPYAPNNGGQNPFGRSAAPT--NTGDNTNIFG 181 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + +P FL AR + I + I + + Sbjct: 182 QSVGGGAATQAPFGSATTNSGNQLPDGSEPASFLRVARQRFNHIQSINSASNIEEIRRYL 241 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 +Y + + + + + +++++ E +++R Sbjct: 242 TPELYNSMYNDIMENQDQ----DVAEFSNLNAMVVDSATENGQYIVSVRF---------- 287 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + + +IW FV+ + +WV+ + Sbjct: 288 -TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 326 >gi|262376593|ref|ZP_06069821.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] gi|262308303|gb|EEY89438.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] Length = 327 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 67/231 (29%), Gaps = 30/231 (12%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 ILL A + FF+F R + KK PF+ G Sbjct: 115 IWILLAAAVAFFIF---RKMSAKKKVASNPFAPNSGAGNTAPFGQAPTAPRGGDSTNIFG 171 Query: 71 LDSINELFPIGTRLNKVMRDIV-----------SVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + L + + +P FL AR + I Sbjct: 172 QNVGGQTSSNNAPLGSAPVNNAPFGAAYTQSGSQLPDGTEPAAFLRVARQRFNHIQSMNT 231 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 + I++ + +YQ + + + + + + ++++S + +++R Sbjct: 232 ASNISEIQRYLTPELYQSMYNDIMSNQDQ----DVAEFSNLNAMVVDSSTDNGQYIVSVR 287 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + + +IW F + N +WV+ + Sbjct: 288 F-----------TGTVSEDLNSLPQPFAEIWHFTKPAGS-NQDWVVAGIQQ 326 >gi|168020464|ref|XP_001762763.1| predicted protein [Physcomitrella patens subsp. patens] gi|162686171|gb|EDQ72562.1| predicted protein [Physcomitrella patens subsp. patens] Length = 428 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 68/214 (31%), Gaps = 16/214 (7%) Query: 24 FLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83 F + + V TG+ K D R + +NE T Sbjct: 219 FKRFKTV----TGH------PVVTKGQELAEDIRERWETSDSPVVHRIQDMNESLFGETA 268 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 MR+I F DFL E + + ++ +G V ++K V + S Sbjct: 269 TAVAMREIRRHDPSFTFSDFLAEMQEEIRPTLRAYLKGDVPTLKKKCCREVLERCQAERS 328 Query: 144 TRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203 +S + + ++ I D++I + N+ I I Q I + DK +I + Sbjct: 329 ALESQGIFLSNEILHISDIEIKETKLLGNSPIIIINFQTQQIHCARDKAGNIIEGARDDI 388 Query: 204 GKVIDIWTFVRNIPPSNP------NWVLISTKLG 231 V W + P W L + Sbjct: 389 HTVFYAWAMQQESPEETSHGEFQTRWKLREMQQA 422 >gi|330818295|ref|YP_004362000.1| hypothetical protein bgla_1g34410 [Burkholderia gladioli BSR3] gi|327370688|gb|AEA62044.1| hypothetical protein bgla_1g34410 [Burkholderia gladioli BSR3] Length = 353 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 32/245 (13%), Positives = 71/245 (28%), Gaps = 35/245 (14%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGK-----------------KTGNEKPFSGFF 45 F M + +I L AFI ++ +L K + G + +G + Sbjct: 123 FASMMANVIVIALLAFIGIWIVRKLMNRNRKPEPAYAGAGSSPGSSMNRGGYDAGSNGGY 182 Query: 46 SGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLN 105 + + + + G L SV FD + F+ Sbjct: 183 ASQNQAYAPAPSQPASSSSYAN-EAAGVFGGAAAAGAGLAAAGTAPSSVPAGFDSEAFVR 241 Query: 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165 A+ + + ++ EG + I + + F + S + + V + +++ Sbjct: 242 NAKVYFIRLQAAWDEGNMTDIREFTTPEM---FAEVKVDLASRGADKNQTDVVQLEAELL 298 Query: 166 NASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 N ++R L+ + ++W + N W+L Sbjct: 299 GVEERGNQYEASVRFH-----------GLIREAPGASAEPFEEVWNLTK---AGNEGWLL 344 Query: 226 ISTKL 230 + Sbjct: 345 AGIQQ 349 >gi|301762886|ref|XP_002916855.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like [Ailuropoda melanoleuca] Length = 324 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 2/139 (1%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I +F KDF +A++ + + + LV + D ++ + Sbjct: 145 IRKIREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHNRLHTLVTENCFPDMVWDITYKTV 204 Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 ++S + S +T+R+ + A YD+ L+ ++ Sbjct: 205 RWSFIESLEPPQVVQVRCSSMLSQGNIYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPKD 264 Query: 206 VIDIWTFVRNIPPSNPNWV 224 V++ F +++ +W Sbjct: 265 VLEYVVFEKHLVNPYGSWR 283 >gi|308809217|ref|XP_003081918.1| mitochondrial import inner membrane translocase subunit TIM44, putative (ISS) [Ostreococcus tauri] gi|116060385|emb|CAL55721.1| mitochondrial import inner membrane translocase subunit TIM44, putative (ISS) [Ostreococcus tauri] Length = 182 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 62/158 (39%), Gaps = 10/158 (6%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL-VDSRVYQDF 138 T + R I S F+ DF+ E R ++ ++ G V A+++ + + + Sbjct: 14 TETEQAEAYRLIRSRDPMFNTNDFIAEVRRDIPKVLGAYLRGDVDALKETNISKEMLERL 73 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 + ++ K+ + V ++ + +++++ + EN + + Q I+ DK ++ Sbjct: 74 SGQMNLWKAEGQFVDPRILDLSEVELMEVRMMENEPLVVLTFSCQQINCVRDKSGKIVEG 133 Query: 199 DPEIFGKVIDIW-------TFVRNIPPSN--PNWVLIS 227 + V +W F + P WVL Sbjct: 134 GEDDIQSVHYLWAMQLVDTKFTTDDGREYMKPTWVLRE 171 >gi|327275540|ref|XP_003222531.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like [Anolis carolinensis] Length = 316 Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 53/161 (32%), Gaps = 2/161 (1%) Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 K+ L + +R I DF K F +A++ + ++ + Sbjct: 113 SKEGLKQRAQQVKQTAASQLAIRKIKDYDPDFSTKTFAEKAQDIFIEAHNNLTNFNKEKM 172 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQF 184 LV + D + ++S + S + +T+R+ + Sbjct: 173 HALVTEYCFPDMVRGNRYKTIRWSFLESLEPPRVVQVRCPTMVSKDNLYGQVTVRMHSRQ 232 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 A YD+ L+ +I V++ F R++ W L Sbjct: 233 TLAIYDRFGRLMYGGEQIPKDVLEYLVFERHLVNPYGQWRL 273 >gi|190894520|ref|YP_001984813.1| putative import inner membrane translocase, TIM family [Rhizobium etli CIAT 652] gi|190700181|gb|ACE94263.1| putative import inner membrane translocase protein, TIM family [Rhizobium etli CIAT 652] Length = 333 Score = 82.7 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 63/215 (29%), Gaps = 20/215 (9%) Query: 16 FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 A I + L +R ++ + S + I +G G N Sbjct: 131 IALIGGAIMLAMRYFANRRQPSYGAGGQSRSYSMSPTNNASFQIPAIGSGAGFGGQSRGN 190 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 L++ + ++ + +L Sbjct: 191 RPSDEIGLAQAD----------------LDQFEELLTNVQTAYGAEDYGTLRRLTTPEAM 234 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NL 194 + L +N + S V + I A E+ Y T+ + I A ++D Sbjct: 235 SYLAEELGENATNGVRNRVSDVKLLQGDIAEAWREDGQEYATLAMRYSSIDAMVERDSGR 294 Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 ++S D + +IWTFVR +W L + + Sbjct: 295 VVSGDDRRPSESTEIWTFVRK---PGGDWKLAAIQ 326 >gi|157964519|ref|YP_001499343.1| hypothetical protein RMA_0619 [Rickettsia massiliae MTU5] gi|157844295|gb|ABV84796.1| hypothetical protein RMA_0619 [Rickettsia massiliae MTU5] Length = 211 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 25/229 (10%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 M +L+FA ITF++ +L LG + E+ + G+ + + + + Sbjct: 1 MSPQIIELLIFAVITFYIINKLITTLGSTSEEEQTNQKSYFGEPIIKDVTYSTVKSNKEE 60 Query: 66 KKKDNLDSINE-----LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 K I + T + M + FDP F+N A+ +++ I+++ ++ Sbjct: 61 KNIPTTQDIKAFKDIIVEHNITAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + +L+D R +F + K + N ++I + Sbjct: 121 KDAKELSELIDKRYLAEFEKITPSYG------DFFDSSALSAKYSEIYMFGNNIFIKLLF 174 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G+ + + + + WTF RN +W L + + Sbjct: 175 QGKNVV--------------DKIEDLKEEWTFTRNANTKEVDWFLSNIE 209 >gi|225712958|gb|ACO12325.1| Probable 39S ribosomal protein L45, mitochondrial precursor [Lepeophtheirus salmonis] Length = 340 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 65/205 (31%), Gaps = 3/205 (1%) Query: 24 FLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83 F + G+L E S S + K+ + Sbjct: 80 FYKTMGILPPTNEKEVKMSYIGSTGALIDTYVPTEGDGKASILSKEGAKEGLTKGTGKGK 139 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS-FFEGKVHAIEKLVDSRVYQDFNDSL 142 R I S DFD K FL +A+ Y S G+ + K V + Y + ++ Sbjct: 140 SFLAARKIRSYEDDFDQKTFLLQAQEIYIKAHKSLVENGEDECLLKYVTEKAYPEMVHNV 199 Query: 143 STRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + + +KS + + +T+R Q A YD+ LI Sbjct: 200 RRKTLRWEFIKSLEPPTIVHIRTQDLLQKQNKFAQVTVRFHTQQTLAVYDRFGRLIHGSE 259 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225 + V++ F R++ +W L Sbjct: 260 VVAKDVLEYVVFERHLASIYGSWRL 284 >gi|290562045|gb|ADD38419.1| Probable 39S ribosomal protein L45, mitochondrial [Lepeophtheirus salmonis] Length = 340 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 66/205 (32%), Gaps = 3/205 (1%) Query: 24 FLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83 F ++ G+L E S S + K+ + Sbjct: 80 FYKIMGILPPTNEKEVKMSYIGSTGALIDTYVPTEGDGKASILSKEGAKEGLTKGTGKGK 139 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS-FFEGKVHAIEKLVDSRVYQDFNDSL 142 R I S DFD K FL +A+ Y S G+ + K V + Y + ++ Sbjct: 140 SFLAARKIRSYEDDFDQKTFLLQAQEIYIKAHKSLVENGEDECLLKYVTEKAYPEMVHNV 199 Query: 143 STRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + + +KS + + +T+R Q A YD+ LI Sbjct: 200 RRKTLRWEFIKSLEPPTIVHIRTQDLLQKQNKFAQVTVRFHTQQTLAVYDRFGRLIHGSE 259 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225 + V++ F R++ +W L Sbjct: 260 VVAKDVLEYVVFERHLASIYESWRL 284 >gi|116249720|ref|YP_765558.1| putative transmembrane TIM family protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254368|emb|CAK03999.1| putative transmembrane TIM family protein [Rhizobium leguminosarum bv. viciae 3841] Length = 331 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 63/218 (28%), Gaps = 20/218 (9%) Query: 16 FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 A I V L +R ++ + S + I T+G G N Sbjct: 129 IALIGGAVMLAMRYFANRRQPSYGVGGQSRSYNMSPTSNSSFQIPTIGSGGGFGGQSRGN 188 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 L++ + ++ + +L Sbjct: 189 RPSDEIGLAQAD----------------LDQFEELLTQVQTAYGAEDYGTLRRLTTPEAM 232 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NL 194 + L +N S V + I A E+ Y T+ + I A ++D Sbjct: 233 SYLAEELGENATNGVRNSVSDVKLLQGDIAEAWREDGQEYATLAMRYSSIDAMVERDSGR 292 Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ++S D + ++WTFVR W L + + E Sbjct: 293 VVSGDDRRPSESTEVWTFVRKSGAD---WKLAAIQGAE 327 >gi|281344359|gb|EFB19943.1| hypothetical protein PANDA_004986 [Ailuropoda melanoleuca] Length = 276 Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 2/139 (1%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I +F KDF +A++ + + + LV + D ++ + Sbjct: 101 IRKIREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHNRLHTLVTENCFPDMVWDITYKTV 160 Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 ++S + S +T+R+ + A YD+ L+ ++ Sbjct: 161 RWSFIESLEPPQVVQVRCSSMLSQGNIYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPKD 220 Query: 206 VIDIWTFVRNIPPSNPNWV 224 V++ F +++ +W Sbjct: 221 VLEYVVFEKHLVNPYGSWR 239 >gi|194910892|ref|XP_001982246.1| GG11153 [Drosophila erecta] gi|190656884|gb|EDV54116.1| GG11153 [Drosophila erecta] Length = 361 Score = 82.3 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 74/205 (36%), Gaps = 13/205 (6%) Query: 28 RGVLGKKTGNEKPFS-----GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82 RGVL + E+PF G F ++ II+ K+K E + Sbjct: 94 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQK------LEFLEKKS 147 Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 + +R I S +F DF EA++ Y + I + V R Y + ++ Sbjct: 148 KSLMAVRKIRSYDENFSSDDFGAEAQDIYIQAHTHMAAKDKYKIREFVSERCYPEMMHNV 207 Query: 143 STRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K ++S + + E +T+R Q + A YD+ L+ Sbjct: 208 KDKTIRWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLMHGSE 267 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225 I V++ F ++I W L Sbjct: 268 IITKDVLEYVVFEKHISNEYGKWRL 292 >gi|222081641|ref|YP_002541006.1| hypothetical protein Arad_8042 [Agrobacterium radiobacter K84] gi|221726320|gb|ACM29409.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 331 Score = 82.3 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 28/214 (13%), Positives = 62/214 (28%), Gaps = 16/214 (7%) Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFP 79 +F+ +R + + N + SG + + + + P Sbjct: 129 AALIFMAIRFAM-RFFANRQQPQYAPSGANASFSMNASKPSSFPIPPIGGGIAGTTQKKP 187 Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 ++ D F + ++ + +L Sbjct: 188 AQADDEIGLQQA-------DLDRF----EKLLTEVQSAYGAEDYATLRRLTTPEAMSYLA 236 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD-KDNLLISS 198 + L + + + + I + E+N Y T+ + + A D K L+ Sbjct: 237 EELGENATKGVRNSVTDIRLLQGDIAESWREDNAEYATLAMRYSSVDALLDRKTGRLVDG 296 Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D + +IWTF+R W+L + + E Sbjct: 297 DDRNASETTEIWTFMRKPGSD---WILSAIQGTE 327 >gi|157786676|ref|NP_001099304.1| 39S ribosomal protein L45, mitochondrial [Rattus norvegicus] gi|149054036|gb|EDM05853.1| mitochondrial ribosomal protein L45 (predicted) [Rattus norvegicus] Length = 306 Score = 82.3 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 2/171 (1%) Query: 56 ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115 K+ L E +R I +F KDF +A++ + Sbjct: 90 PPEGDARMSSLSKEGLTQRTERLRKNVASQLAIRKIKEFDANFKTKDFPEKAKDIFIEAH 149 Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENT 173 + LV + D L + V+S + + Sbjct: 150 LCLNNSDHDRLHTLVTEHCFPDMVWELKYKTVRWSFVESLEPAQVVHVRSSGLVNQSNMY 209 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 +T+R+ + A YD+ L+ ++ V++ F R++ +W Sbjct: 210 GQVTVRLHTRQTLAIYDRFGRLMYGQEDVPKDVLEYVVFERHLMNPYGSWR 260 >gi|73966162|ref|XP_850801.1| PREDICTED: similar to mitochondrial ribosomal protein L45 [Canis familiaris] Length = 303 Score = 82.3 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 48/139 (34%), Gaps = 2/139 (1%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I +F KDF +A++ + + LV + D + + Sbjct: 122 IRKIREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIKYKTV 181 Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 V+S + + +T+R+ + A YD+ L+ ++ Sbjct: 182 RWSFVESLEPPQVVQVRCSNLLNQGNIYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPRD 241 Query: 206 VIDIWTFVRNIPPSNPNWV 224 V++ F +++ +W Sbjct: 242 VLEYVVFEKHLVNPYGSWR 260 >gi|332702904|ref|ZP_08422992.1| import inner membrane translocase subunit Tim44 [Desulfovibrio africanus str. Walvis Bay] gi|332553053|gb|EGJ50097.1| import inner membrane translocase subunit Tim44 [Desulfovibrio africanus str. Walvis Bay] Length = 343 Score = 82.3 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 63/221 (28%), Gaps = 23/221 (10%) Query: 12 LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71 +LLF +F +R + S S + R + + Sbjct: 145 ELLLFGLAGLMLFRFIRS---------RKVSQASSAAMAGNDRYAYAAAQADRSSPAASA 195 Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 S + L + + ++ D +FL+ A+ Y + S+ + I Sbjct: 196 GSWDSLRSASAQASSAPEAGPAMPEGLDEAEFLSGAKALYARLQASWNRRDLKDIRAFTS 255 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 V + + + + V + + +++ + IT+ Sbjct: 256 PEVLAEIERQAAE----DPTPDKTDVLMLNARVLEVRRDGQQTVITVLYDALLRE----- 306 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +V ++W R+ P W+L + E Sbjct: 307 -----DQSASQPTQVREVWHIRRDESAPRPEWILEGIQQLE 342 >gi|323137415|ref|ZP_08072493.1| import inner membrane translocase subunit Tim44 [Methylocystis sp. ATCC 49242] gi|322397402|gb|EFX99925.1| import inner membrane translocase subunit Tim44 [Methylocystis sp. ATCC 49242] Length = 336 Score = 82.3 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 57/223 (25%), Gaps = 11/223 (4%) Query: 11 FLILLFAF-ITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 I+ F I VFL + + G + G Sbjct: 122 MSIIGFLMQIALVVFL-------ARMAFMWWANRNAPAGAGSRPGAPFGSMFTGGAPFGA 174 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 G + + +DF N ++ + A+ + Sbjct: 175 KGPGAGGFRAAGFGSGAAPQGARATPLKVQAEDF-NAFERLLGETQAAYSREDLGALRMM 233 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + F+D L + + S V + + A E + Y T+ + Sbjct: 234 STPEMASYFDDELDENRRKGVVNRVSDVKLLQGDLSEAWREGSDEYATVAMRFSLNDVME 293 Query: 190 DK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 D+ P V ++WTF R W L + + Sbjct: 294 DRATGKPTPGSPGKSEAV-EVWTFRRPAGAGPQEWKLSAIQQA 335 >gi|170691129|ref|ZP_02882295.1| import inner membrane translocase subunit Tim44 [Burkholderia graminis C4D1M] gi|170144378|gb|EDT12540.1| import inner membrane translocase subunit Tim44 [Burkholderia graminis C4D1M] Length = 324 Score = 82.3 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 24/229 (10%), Positives = 59/229 (25%), Gaps = 20/229 (8%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 +M S LI L +F R + ++ G + Sbjct: 115 AQMLSNMLLIGLVVMAGVMLF---RFIANRRR--PDLAYGQGAASRSQGNGSPFQHPNQN 169 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 + D + S D + + A+ + + ++ + Sbjct: 170 GQARPDTNFFGTQRAATNPVAATGAFSAPSQPLGLDQAELVTSAKTMFMRLQRAWDANEQ 229 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 + +L + F + + V D +++ N ++++R Sbjct: 230 GDLFELTTPEM---FAQLKRDLEGRGSQPSRTEVPQLDAEVLGVESTANETFVSVRFY-- 284 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + D ++W VR+ + W L + + Sbjct: 285 ---------GQMREDDAPTAQPFQEVWNIVRSAHTGD-TWRLAGIQQLD 323 >gi|89900086|ref|YP_522557.1| import inner membrane translocase subunit Tim44 [Rhodoferax ferrireducens T118] gi|89344823|gb|ABD69026.1| import inner membrane translocase, subunit Tim44 [Rhodoferax ferrireducens T118] Length = 318 Score = 82.3 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 20/246 (8%), Positives = 79/246 (32%), Gaps = 30/246 (12%) Query: 5 KMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK 64 M IL+FA + + + + ++G + + + + + Sbjct: 85 GMGGAFGQILMFALLAMVIMMAVAWFKRSRSGAQSQDTAKSPFAFQGAAPATAAQLPASY 144 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVS-----------------VYTDFDPKDFLNEA 107 + D+ + + + ++ + V FD + FL A Sbjct: 145 RPENVGNDASARPWERNSTAFEALKTTPAVAGSMIGSGLAGSQSWGVPDGFDAEGFLTSA 204 Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN-EKNVKSSLVGIDDMKIIN 166 + ++ ++ ++ + ++A+ ++ + ++ L+ R+++ V + V + + +++ Sbjct: 205 KANFVSLQAAWDKSDINALRVMMTDTMLKEIQAQLAEREAHTGGPVNLTDVVMIEAQLLG 264 Query: 167 ASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 + ++ ++ ++W + W++ Sbjct: 265 IEDTGDDYMASVEF-----------SGMIREEPSAGASPFREVWNMTK-TKSGKSGWLVA 312 Query: 227 STKLGE 232 + + Sbjct: 313 GVQALQ 318 >gi|187479558|ref|YP_787583.1| membrane protein [Bordetella avium 197N] gi|115424145|emb|CAJ50698.1| Putative membrane protein [Bordetella avium 197N] Length = 328 Score = 81.9 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 26/224 (11%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 + +++FA + F+ +LRG ++ + + G S + +++ + Sbjct: 124 SALLIGLVVFAVL--FIVRRLRGASAQRPAMQGAYGGAGSQQAAQTQQPMW-------RE 174 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + V DFD FL +A+ + I + G V + Sbjct: 175 ASMPAAAPVAAAAPAALPKAGEDGNWFVPGDFDTPRFLQQAKEQFVRIQAIWDSGNVDNL 234 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 L+ + +F L R V + V + + +++ + ++R Sbjct: 235 RDLLTDDLIAEFKPQLEAR---GNEVNKTEVVLLNAELLGIETVSDGHLASVRF------ 285 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +L + + ++W + W+L + Sbjct: 286 -----SGMLREAPGAEAFRFEEVWNLFKPTTGG---WLLAGIQQ 321 >gi|66550524|ref|XP_625034.1| PREDICTED: probable 39S ribosomal protein L45, mitochondrial [Apis mellifera] Length = 332 Score = 81.9 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 66/200 (33%), Gaps = 3/200 (1%) Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87 G++ ++T NE+P + S G I E ++ Sbjct: 80 YGIMPQRTWNERPIYISSTPGIFESYIVPEGDGKFSPITTTGAKQKI-EFINKKSKSFIA 138 Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I ++ K FL + + Y+ ++ K I K V Y ++ + Sbjct: 139 LRKIKGYEENYTTKTFLEQTLDIYKKAHEALCTQKKDEILKYVTETAYPIMIHNIKNKTI 198 Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 K ++S + + +TIR Q I YD+ ++ + Sbjct: 199 IWKFMESLEPARLVHARVTSIVTQGNEFAQVTIRFHTQQILCIYDRFGRVLLGSETVKKD 258 Query: 206 VIDIWTFVRNIPPSNPNWVL 225 V+D F +++ W + Sbjct: 259 VLDYIVFEKHLSNEYGIWRI 278 >gi|332534647|ref|ZP_08410479.1| hypothetical protein PH505_bn00240 [Pseudoalteromonas haloplanktis ANT/505] gi|332035927|gb|EGI72408.1| hypothetical protein PH505_bn00240 [Pseudoalteromonas haloplanktis ANT/505] Length = 284 Score = 81.9 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 23/223 (10%), Positives = 62/223 (27%), Gaps = 33/223 (14%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 ++L A F+ +L TG + S + + Sbjct: 89 GFQLLEMILLAG-GLFILFKLV------TGFLRANRAPQLASPSTSAQQNAFKQAPIEQP 141 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + + ++ +FD FL AR+ Y + ++ + Sbjct: 142 TSTGF---------ASSAPQGESVPFNLPPNFDVNGFLQGARSHYHTLQTAWNNADYTTM 192 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + + + +F + V D +++ A + +++R Sbjct: 193 AEYLSPTLVAEFKAEREA-----IQSVETEVMFIDAELVRADTNAQSWQVSVRF------ 241 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + +++IW R + + W+++ + Sbjct: 242 -----KGKYRDLGDKKEEPILEIWHLER-LMSDDAPWLIVGVE 278 >gi|192292770|ref|YP_001993375.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris TIE-1] gi|192286519|gb|ACF02900.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris TIE-1] Length = 337 Score = 81.9 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 67/220 (30%), Gaps = 19/220 (8%) Query: 13 ILLFAFITFFVFL-QLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71 I L + V L +L ++ N +P + +G + G Sbjct: 133 IGLVLQVALVVILARLAWGWWQRRNNPQPAYAAGQAPGQGPQPMNQGPQSPGPQAAYRTG 192 Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 L D + F I ++ + + +L Sbjct: 193 FGFGGGASNDRPLEIKPE---------DYEAF----ERLLGDIQAAWSNEDIDRLRQLAT 239 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 + F L K+ K S V + + A E + Y T+ + + + ++ Sbjct: 240 PEMASYFAKDLEENKAANDINKVSDVKLLQGDLAEAWREGESDYATVAMRFSLVDKTLER 299 Query: 192 -DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 N L++ E +V +IWTF R +W L + + Sbjct: 300 GTNRLVAGS-ETPIEVTEIWTFTRR---PGASWELAAIQQ 335 >gi|316968065|gb|EFV52405.1| conserved hypothetical protein [Trichinella spiralis] Length = 468 Score = 81.9 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 65/182 (35%), Gaps = 4/182 (2%) Query: 48 KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107 + S+ GK + D++ + F +++V+ +I + +FD DF + Sbjct: 279 QIAESENPVVRATRYFGGKLSEFFDNLLDAFLDNCSVSEVLTEICKIDPNFDVTDFRKQC 338 Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167 + + I ++ G+ + + LS K L ID+++II Sbjct: 339 QRDF--IPNASNRGEEEILRDWCSEGAFNQLIALLSECKRAGYKHTFRLFDIDNVEIITG 396 Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN--PNWVL 225 I + + + + + D + + + +W F R++ N W + Sbjct: 397 KITDMGPVLLVAFQTRQLRCIQTPDGKFVFGTTDDPLLITHLWAFCRDVDEPNSKAAWRV 456 Query: 226 IS 227 + Sbjct: 457 VD 458 >gi|299067983|emb|CBJ39197.1| conserved membrane protein of unknown function [Ralstonia solanacearum CMR15] Length = 345 Score = 81.9 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 26/243 (10%), Positives = 66/243 (27%), Gaps = 38/243 (15%) Query: 13 ILLFAFITFFVFLQLRGVLGKK-------------TGNEKPFSGFFSGKYVF-------- 51 ++L A I F V +R + G + +G+ +P+ + Sbjct: 118 LILIAIIAFVVMWIIRKLRGSRPQEPAYATGGPSLSGDREPYVPSPAAPAAQPAAPVAAS 177 Query: 52 --SKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN 109 + + +L + V DFD + FL A+ Sbjct: 178 AGTGNASGLGSGAQTAAQAWSLGGPAAPAANAPAAAPAAQQPWGVPADFDTQAFLRNAKV 237 Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169 + + ++ G ++ I + + F + + V + +++ Sbjct: 238 YFVRLQAAWDAGNLNDIREFTTPEM---FAEIKMDLTDRGTVPNKTDVVSVEAELLGIET 294 Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 ++R ++ ++W + + WVL + Sbjct: 295 HPTEYLASVRF-----------SGMIREEASAPAQPFAEVWNLTKP-TQGSGGWVLAGIQ 342 Query: 230 LGE 232 + Sbjct: 343 QLQ 345 >gi|39936942|ref|NP_949218.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris CGA009] gi|39650799|emb|CAE29322.1| conserved unknown protein [Rhodopseudomonas palustris CGA009] Length = 337 Score = 81.9 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 67/220 (30%), Gaps = 19/220 (8%) Query: 13 ILLFAFITFFVFL-QLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71 I L + V L +L ++ N +P + +G + G Sbjct: 133 IGLVLQVALVVILARLAWGWWQRRNNPQPAYAAGQAPGQGPQPMNQGPQSPGPQAAYRTG 192 Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 L D + F I ++ + + +L Sbjct: 193 FGFGGGASNDRPLEIKPE---------DYEAF----ERLLGDIQAAWSNEDIDRLRQLAT 239 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 + F L K+ K S V + + A E + Y T+ + + + ++ Sbjct: 240 PEMASYFAKDLEENKAANDINKVSDVKLLQGDLAEAWREGESDYATVAMRFSLVDKTLER 299 Query: 192 -DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 N L++ E +V +IWTF R +W L + + Sbjct: 300 GTNRLVAGS-ETPIEVTEIWTFTRR---PGASWELAAIQQ 335 >gi|209552377|ref|YP_002284292.1| import inner membrane translocase subunit Tim44 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539489|gb|ACI59421.1| import inner membrane translocase subunit Tim44 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 332 Score = 81.5 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 63/218 (28%), Gaps = 19/218 (8%) Query: 16 FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 A I L +R ++ +P G FS+ + Sbjct: 129 IALIGGAFMLAMRYFANRR----QPSYGAGGQSGSFSRSYSMSPANNSSFQIPAIGSGAG 184 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 + L++ + ++ + +L Sbjct: 185 SGASSRPSDEIGLAQAD-----------LDQFEELLTDVQTAYGAEDYATLRRLTTPEAM 233 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NL 194 + L +N + S V + I A E+ Y T+ + I A +++ Sbjct: 234 SYLAEELGENATNGVRNRVSDVKLLQGDIAEAWREDGQEYATLAMRYSSIDAMVERNSGR 293 Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ++S D + ++WTFVR +W L + + E Sbjct: 294 VVSGDDRRPSESTEVWTFVRK---PGADWKLAAIQGSE 328 >gi|21355709|ref|NP_651072.1| mitochondrial ribosomal protein L45 [Drosophila melanogaster] gi|29611874|sp|Q9VCX3|RM45_DROME RecName: Full=Probable 39S ribosomal protein L45, mitochondrial; Short=L45mt; Short=MRP-L45; Flags: Precursor gi|7300891|gb|AAF56032.1| mitochondrial ribosomal protein L45 [Drosophila melanogaster] gi|17945151|gb|AAL48635.1| RE09223p [Drosophila melanogaster] gi|220947926|gb|ACL86506.1| mRpL45-PA [synthetic construct] gi|220957222|gb|ACL91154.1| mRpL45-PA [synthetic construct] Length = 361 Score = 81.5 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 74/205 (36%), Gaps = 13/205 (6%) Query: 28 RGVLGKKTGNEKPFS-----GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82 RGVL + E+PF G F ++ II+ K+K E + Sbjct: 94 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQK------LEFLEKKS 147 Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 + +R I S +F DF EA++ Y + I + V R Y + ++ Sbjct: 148 KSLMAVRKIRSYDENFSSDDFGAEAQDIYIQAHTHMAAKDKYKIREFVSERCYPEMMHNV 207 Query: 143 STRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K ++S + + E +T+R Q + A YD+ L+ Sbjct: 208 KDKTIRWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLMHGSE 267 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225 I V++ F ++I W L Sbjct: 268 IITKDVLEYVVFEKHISNEYGKWRL 292 >gi|255320354|ref|ZP_05361538.1| conserved hypothetical protein [Acinetobacter radioresistens SK82] gi|255302549|gb|EET81782.1| conserved hypothetical protein [Acinetobacter radioresistens SK82] Length = 333 Score = 81.5 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 65/231 (28%), Gaps = 35/231 (15%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 +LL A + FFVF +K G +K + + + + + Sbjct: 126 LWVLLAAAVAFFVF--------RKFGAKKKLATNNPYAPNSAGPNPSPFGQHNAAPRTQD 177 Query: 71 LDSINELFPIGTRLNKVMRDIV-----------SVYTDFDPKDFLNEARNSYEAIVDSFF 119 +I G+ + + +P FL AR + I Sbjct: 178 NTNIFGQSVGGSSTAANTANNAPFGTAYTNSGQQLPDGTEPAAFLRIARQRFNHIQSMNT 237 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 + I + + +Y + ++ + + ++++ E +++R Sbjct: 238 ASNIEEIRRYLTPELYNAMRSDIM----ANQDQDVAEFSNLNAMVVDSVTENGQYVVSVR 293 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + + + W FV+ +WV+ + Sbjct: 294 F-----------TGTVSEDLNSLPQPFSETWHFVKPAGSQQ-DWVVAGIQQ 332 >gi|262379363|ref|ZP_06072519.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] gi|262298820|gb|EEY86733.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] Length = 325 Score = 81.5 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 65/231 (28%), Gaps = 35/231 (15%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 +LL A + FFVF +K G +K + + + + + Sbjct: 118 LWVLLAAAVAFFVF--------RKFGAKKKLATNNPYAPNSAGPNPSPFGQHNAAPRTQD 169 Query: 71 LDSINELFPIGTRLNKVMRDIV-----------SVYTDFDPKDFLNEARNSYEAIVDSFF 119 +I G+ + + +P FL AR + I Sbjct: 170 NTNIFGQSVGGSSTAANTANNAPFGTAYTNSGQQLPDGTEPAAFLRIARQRFNHIQSMNT 229 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 + I + + +Y + ++ + + ++++ E +++R Sbjct: 230 ASNIEEIRRYLTPELYNAMRSDIM----ANQDQDVAEFSNLNAMVVDSVTENGQYVVSVR 285 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + + + W FV+ +WV+ + Sbjct: 286 F-----------TGTVSEDLNSLPQPFSETWHFVKPAGSQQ-DWVVAGIQQ 324 >gi|86360020|ref|YP_471910.1| hypothetical protein RHE_PB00141 [Rhizobium etli CFN 42] gi|86284122|gb|ABC93183.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 337 Score = 81.5 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 64/215 (29%), Gaps = 16/215 (7%) Query: 16 FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75 A I V L +R ++ Y + + + I Sbjct: 131 IALIGGAVMLAMRYFANRRQ-----------PSYGAGGQSRSYGQSFNMAPTNHSSFHIP 179 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 + + + S D L++ ++ ++ + +L Sbjct: 180 AIGSGAGYGGQSRGNRPSDEIGLTQAD-LDQFEELLTSVQTAYGAEDYGTLRRLTTPEAM 238 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NL 194 + L +N + S V + I A E Y T+ + I A ++D Sbjct: 239 SYLAEELGENATNGVRNRVSDVKLLQGDIAEAWRENGQEYATLAMRYSSIDAMVERDSGR 298 Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 ++S D + +IWTFVR W L + + Sbjct: 299 VVSGDDRRPSESTEIWTFVRKSGAD---WKLAAIQ 330 >gi|149927075|ref|ZP_01915333.1| hypothetical protein LMED105_09477 [Limnobacter sp. MED105] gi|149824296|gb|EDM83516.1| hypothetical protein LMED105_09477 [Limnobacter sp. MED105] Length = 340 Score = 81.5 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 62/232 (26%), Gaps = 23/232 (9%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSK-------RDE 56 M +L+ A F V +R + G++ +P Sbjct: 122 AGMAEFLGTMLMIAAAVFAVMFLVRMLRGQQAAKPRPAYSAPGATGSGQNSYRQASTNPI 181 Query: 57 RGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116 + + D + + FD +F+N A+ + + Sbjct: 182 NDPVPGMGAPRNDQGFGQFGNASAFDAPMPAATPVKDLPAGFDEANFVNSAKKFFVTMQG 241 Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 F +G V + + V + R V + V D ++I + + Sbjct: 242 VFDKGDVDGLREYCSDDVVDHLRAEIEAR---GNAVNRTDVVTLDAQLIGFETDVDEQIA 298 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 T+ +L ++ ++W R + WVL Sbjct: 299 TVAF-----------TGMLREEQDAAAEEINELWIMSRPVSGGG--WVLSGI 337 >gi|71735681|ref|YP_277225.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485679|ref|ZP_05639720.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625508|ref|ZP_06458462.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649763|ref|ZP_06481106.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. aesculi str. 2250] gi|71556234|gb|AAZ35445.1| Tim44-like domain family [Pseudomonas syringae pv. phaseolicola 1448A] gi|320321766|gb|EFW77864.1| Tim44-like domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320331516|gb|EFW87456.1| Tim44-like domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330870932|gb|EGH05641.1| Tim44-like domain-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330880967|gb|EGH15116.1| Tim44-like domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330986943|gb|EGH85046.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011967|gb|EGH92023.1| Tim44-like domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 280 Score = 81.5 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 73/232 (31%), Gaps = 40/232 (17%) Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58 +F+ F IL+ I F +F R + ++ + + + S + + Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPYQRESSQPAQN 140 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 I G+ +++ F+ + FL AR ++++ + Sbjct: 141 PI-------------------FGSSSPASAAPVINAPAWFNEERFLEAARGHFQSLQQHW 181 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 ++ I + V ++ Q R +S+ + +++ + T+ Sbjct: 182 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTYIDNLQVQLDGVDDRADKTIATL 238 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G S+ +D + + W R + P W++ + Sbjct: 239 TFSGVSKSSRFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 278 >gi|163854788|ref|YP_001629086.1| hypothetical protein Bpet0483 [Bordetella petrii DSM 12804] gi|163258516|emb|CAP40815.1| conserved hypothetical protein [Bordetella petrii] Length = 332 Score = 81.5 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 68/220 (30%), Gaps = 20/220 (9%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 +++FA + F+ +LRGV G + + + ++ + Sbjct: 126 IGLVVFAVL--FIVRRLRGV-GPRHATQGAYGAARQEHAGQGQQPMWRQSAGASAGSAAS 182 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + P + + DF+ +FL +A+ + I + G + + + Sbjct: 183 PAAAAAPAPAAGLPAADDDNNWYIPGDFNTTEFLKKAKEQFVQIQAIWDSGDTDRLREFL 242 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 + + L+ R + V + + +++ + ++R Sbjct: 243 TDDLIAELKQQLAER---GAAPNQTEVVLLNAELLGIETVSDGHLASVRF---------- 289 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +L + + +IW + W+L + Sbjct: 290 -SGMLREAPGTEAFRFEEIWNLFKP---QQGGWLLAGIQQ 325 >gi|47216426|emb|CAG01977.1| unnamed protein product [Tetraodon nigroviridis] Length = 405 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 64/185 (34%), Gaps = 9/185 (4%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEA 113 + + D + T +++V+ +IV FD FL + ++ Sbjct: 214 ESDNALIRASRAVTDRVTDFLGGLFSKTEMSEVLTEIVKADPTFDKDSFLKQCEKDIIPN 273 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G++ ++ Y + K+ +S ++ ID++ + + E Sbjct: 274 ILEAMIRGELDVLKDWCYEATYSQLAHPIQQAKALGLRFQSKVLDIDNIDLAMGKMMEQG 333 Query: 174 VYITIRIVGQFISASYDKDNLLISSDP------EIFGKVIDIWTFVRNIPPSNP--NWVL 225 + I Q I ++ DP +++ +W R+ NP W L Sbjct: 334 PVLIITFQAQVIMVIRSPKGDIVEGDPVSTVTSGKVMRMMYVWALCRDQEELNPSAAWRL 393 Query: 226 ISTKL 230 + Sbjct: 394 LDISA 398 >gi|329916047|ref|ZP_08276350.1| putative membrane protein [Oxalobacteraceae bacterium IMCC9480] gi|327544779|gb|EGF30180.1| putative membrane protein [Oxalobacteraceae bacterium IMCC9480] Length = 204 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 67/227 (29%), Gaps = 26/227 (11%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 M S ++ L A F ++ K S + F+ + G+ Sbjct: 2 ASMISTMLMVGLLAA-AGFFIYRMF----------KRKSEQGGTQPAFAGAAKTGLTPDI 50 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 + D G+ + V DFD F+ + + + ++ V Sbjct: 51 GSRIDPATDYRFGSNSAGSATGNSAQAPWGVPADFDTTGFVRHTKTYFVRLQAAWDSANV 110 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 + I + ++ + + R + + V D +++ + ++ +++ Sbjct: 111 NDIREFTTPEMFAELRLQIQER---GPSDSHTDVVQLDAELLGMELVDDDHLASVKF--- 164 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ SD ++W + WVL + Sbjct: 165 --------SGMIKESDAAPAEPFTEVWNLSKPRNGQGG-WVLAGIQQ 202 >gi|194374347|dbj|BAG57069.1| unnamed protein product [Homo sapiens] Length = 329 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 2/139 (1%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I +F KDF +A++ + + LV + D + + Sbjct: 145 IRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKTV 204 Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 V+S + + IT+R+ + A YD+ L+ ++ Sbjct: 205 RWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKD 264 Query: 206 VIDIWTFVRNIPPSNPNWV 224 V++ F + + +W Sbjct: 265 VLEYVVFEKQLTNPYGSWR 283 >gi|296202660|ref|XP_002748546.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like [Callithrix jacchus] Length = 329 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 46/140 (32%), Gaps = 2/140 (1%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 +R I F KDF +A++ + + LV + D + + Sbjct: 144 AIRKIKEHDASFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKCKT 203 Query: 147 SNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFG 204 V+S + + +T+R+ + A YD+ L+ ++ Sbjct: 204 VRWSFVESLEPSHVVQVRCSSMVNESNMYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPK 263 Query: 205 KVIDIWTFVRNIPPSNPNWV 224 V++ F + + +W Sbjct: 264 DVLEYVVFEKQLVNPYGSWR 283 >gi|167525988|ref|XP_001747328.1| hypothetical protein [Monosiga brevicollis MX1] gi|163774163|gb|EDQ87795.1| predicted protein [Monosiga brevicollis MX1] Length = 437 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 22/193 (11%), Positives = 62/193 (32%), Gaps = 3/193 (1%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 E + ++ G D L V+ ++ + Sbjct: 235 ENNPVLNRIFDLQMKYDESDNVLVRGARSVTDTLTDRLGQVFENDESGAVLAEVQRLDPT 294 Query: 98 FDPKDFLNEA-RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD F + A++++F G +++ + + + R+++ ++ + Sbjct: 295 FDRLAFTLHCEKKVIPAVLEAFIAGDKEVLKEWCAEVCFNNMAAQIDQREASGIIYEARI 354 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 + I D++ I A + + Q D+ ++ + + + ++ RN Sbjct: 355 LDIADVEYITAQRMDEGPVLVFVFNAQQTHCIRDRTGAVVEGSEDNIQQSMYMFAMRRNP 414 Query: 217 PPSNP--NWVLIS 227 +P W ++ Sbjct: 415 AIFDPKLAWQVLE 427 >gi|302187827|ref|ZP_07264500.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. syringae 642] Length = 280 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 74/232 (31%), Gaps = 40/232 (17%) Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58 +F+ F IL+ I F +F R + ++ + + + + + + Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPYQRETSQPAQN 140 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + G+ +++ FD + FL+ AR ++++ + Sbjct: 141 PV-------------------FGSSSPASAAPVINAPAWFDEQRFLDAARGHFQSLQQHW 181 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 ++ I + V ++ Q R +S+ + +++ + T+ Sbjct: 182 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTYIENLQVQLDGVDDRADKTIATL 238 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D + + W R + P W++ + Sbjct: 239 TFSGVSKTSRFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 278 >gi|225451048|ref|XP_002284948.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 299 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 9/154 (5%) Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 L + + F EA + Y+ I ++ K V +Y + + Sbjct: 142 ELKSAYAVAKLRKIGYSRQKFYTEAVDLYKEINSQIANSAKASLRKSVTENMYSALKNEI 201 Query: 143 STRKSNEKNVKSSLVGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 R+S V +V + I + + + +T+ + + +YD Sbjct: 202 KQRESKWHKVYWEMVEPVVKIRTLRARMISIDRNDMNKAFIQLTLEFLTKQKFEAYDSKG 261 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 +++ D + V D+W F R++ W L Sbjct: 262 CVVAGDKDKEVLVRDVWVFERSLFHPGAYWRLCG 295 >gi|145590075|ref|YP_001156672.1| import inner membrane translocase, subunit Tim44 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048481|gb|ABP35108.1| import inner membrane translocase, subunit Tim44 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 303 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 60/224 (26%), Gaps = 26/224 (11%) Query: 8 SGDFLILLFAFITFFVFLQL-RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 S LL A I FV + L R +L P + Sbjct: 103 SSLITGLLIAMIAGFVIMFLIRKIL--------PALSGAGQNTNVPPAAVPRSNLDQTPR 154 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + + + ++ + FD + FL A+ + + ++ G + A+ Sbjct: 155 QDPGFAPAANAYSGVSAADEKFEST--IPAGFDERTFLENAKQYFVNLQKAWDLGDLAAL 212 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + + F + + V D K++ E + +++ Sbjct: 213 GEFTTPEM---FATIQQDLAGRSDSANQTDVLSIDAKLLGIETSEAHYFCSVQF------ 263 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ +IW + + WVL Sbjct: 264 -----KGMIREQPGAPASDFSEIWNLSKPVNGPGG-WVLAGISQ 301 >gi|195502658|ref|XP_002098321.1| GE10319 [Drosophila yakuba] gi|194184422|gb|EDW98033.1| GE10319 [Drosophila yakuba] Length = 361 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 75/205 (36%), Gaps = 13/205 (6%) Query: 28 RGVLGKKTGNEKPFS-----GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82 RGVL + E+PF G F ++ II+ K+K E + Sbjct: 94 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQK------LEFLEKKS 147 Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 + +R I S F DF EA++ Y + + I + V R Y + ++ Sbjct: 148 KSLMAVRKIRSYEESFSTDDFGAEAQDIYIQAHTHMAAKEKYKIREFVSERCYPEMMHNV 207 Query: 143 STRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + + K ++S + + E +T+R Q + A YD+ L+ Sbjct: 208 KDKTIHWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLMHGSE 267 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225 + V++ F ++I W L Sbjct: 268 IVTKDVLEYVVFEKHISNEYGKWRL 292 >gi|170042852|ref|XP_001849125.1| 39S ribosomal protein L45 [Culex quinquefasciatus] gi|167866282|gb|EDS29665.1| 39S ribosomal protein L45 [Culex quinquefasciatus] Length = 336 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 75/200 (37%), Gaps = 3/200 (1%) Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87 RG+L + E+PF +G VF K+ E T+ Sbjct: 83 RGLLPPRPWLERPFHISCTG-GVFEPYIPPEGDGKMSAVSKEGAKQKFEQLEKKTKSMMA 141 Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I S DF+P +F A++ Y ++ + + ++V R Y + ++S + Sbjct: 142 IRKIRSYDDDFEPPEFAGYAQDIYIDTHNTLAAKNKYKLREIVTERAYPELIHNVSDKTI 201 Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 + K +KS + S + +T+R Q I A YD+ L+ I Sbjct: 202 HWKFLKSLEPPRVVHARCTDVISKDNIFAQVTVRFHSQQILAIYDRFGRLMHGSETIAKD 261 Query: 206 VIDIWTFVRNIPPSNPNWVL 225 ++ F +++ W L Sbjct: 262 CLEYVVFEKHVSNEYGVWRL 281 >gi|118782853|ref|XP_312541.3| AGAP002412-PA [Anopheles gambiae str. PEST] gi|116129764|gb|EAA08051.3| AGAP002412-PA [Anopheles gambiae str. PEST] Length = 335 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 3/200 (1%) Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87 RG++ + E+PF +G VF ++ E T+ Sbjct: 85 RGIMPPRPWLERPFHISCTG-GVFEPYIPPEGDGRMSAISREGAKQKIEQLEKKTKSMMA 143 Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I + DF+P +F A++ Y + E + + ++V R Y + +++ + Sbjct: 144 IRKIRNYDEDFEPPEFATLAQDIYIEAHKTLCEKNKYKLREIVTERAYPELMHNVADKTI 203 Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 + +KS + + E +T+R Q A YD+ L+ + Sbjct: 204 RWQFLKSLEPPRVVHARCTDVITKENIFAQVTVRFHSQQTLAIYDRFGRLMHGSETVAKD 263 Query: 206 VIDIWTFVRNIPPSNPNWVL 225 I+ F +++ W L Sbjct: 264 CIEYVVFEKHLANEYGVWRL 283 >gi|212702059|ref|ZP_03310187.1| hypothetical protein DESPIG_00061 [Desulfovibrio piger ATCC 29098] gi|212674574|gb|EEB35057.1| hypothetical protein DESPIG_00061 [Desulfovibrio piger ATCC 29098] Length = 300 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 29/222 (13%), Positives = 68/222 (30%), Gaps = 27/222 (12%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 ILL + +F+ L+ ++ + +G + G + + Sbjct: 105 IMDILLLGIL---LFVGLKLFARSRSKAQPAPAG--------AGNAPMGGMEPPLQRNDT 153 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + L N ++ + DFD ++FL A+ +Y + ++ ++ I + Sbjct: 154 AAAGWDTLSSQDNTYNSQPEVVIPMPADFDAEEFLRGAKMAYNRLQAAWDNRDLNDIAQF 213 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V L+ + + + + ++++ E+ + Sbjct: 214 ASPAVMDAVRQQLAEETE----PSKTEILLVNAQLLSVVNEDKEQRAQVYFDVLMRERP- 268 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 D V +IW FVR + W L + Sbjct: 269 ---------DQPTPSNVREIWHFVREL--DGGTWKLDGIQQV 299 >gi|330961416|gb|EGH61676.1| Tim44-like domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 280 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 73/232 (31%), Gaps = 40/232 (17%) Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58 +F+ F IL+ I F +F R + ++ + + + + + + Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPYQREASQPGQN 140 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 I G+ +++ F+ + FL AR ++A+ + Sbjct: 141 PI-------------------FGSSAPASAAPVINAPAWFNEERFLEAARGHFQALQQHW 181 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 ++ I + V ++ Q R +S+ + +++ + T+ Sbjct: 182 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTFIDNLSVQLDGVDDRADKTIATL 238 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D + + W R + P W++ + Sbjct: 239 TFSGVSKTSRFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 278 >gi|237756615|ref|ZP_04585131.1| import inner membrane translocase, subunit Tim44 [Sulfurihydrogenibium yellowstonense SS-5] gi|237691229|gb|EEP60321.1| import inner membrane translocase, subunit Tim44 [Sulfurihydrogenibium yellowstonense SS-5] Length = 296 Score = 80.7 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 9/219 (4%) Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73 LL A +F L LG + R + N + Sbjct: 85 LLGALAGMAIFSALSHFLGPQFAAGVLGLLGLLLLAGLIFFVIRLFRKREEPSYASNTNL 144 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 + + + + + LN ++ + I ++ G + ++ + R Sbjct: 145 NYQPYQYDDSQTQA-----GSLPYINEELILNLTKSIFYDIQKAWSNGDLSPVKNFLTDR 199 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 +YQ + L K+ I++++I++ E + + +R+ I + D D Sbjct: 200 MYQYLEEQLKELKAKGLRNIVENPKIENLEIVHVEEEGDNKVVIVRLDASAIDYTVDSDG 259 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ++ D + W FV NW L K + Sbjct: 260 NIVEGDKYNPVSFTEYWAFV----GKALNWKLDDIKQVD 294 >gi|187924050|ref|YP_001895692.1| import inner membrane translocase subunit Tim44 [Burkholderia phytofirmans PsJN] gi|187715244|gb|ACD16468.1| import inner membrane translocase subunit Tim44 [Burkholderia phytofirmans PsJN] Length = 320 Score = 80.7 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 19/221 (8%), Positives = 63/221 (28%), Gaps = 22/221 (9%) Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73 LL + F + R + ++ + +++ G+ + + Sbjct: 120 LLIGAVIFAGVMLFRFIANRRR-----PDLAYGNGAANRQQNGGTPFLNQMGQARPETTN 174 Query: 74 INELFPIGTRLNKVMRDIVSVY--TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 + + + D +L A+ + + ++ + + +L Sbjct: 175 FRGWPRAAMGSAAGADTVKAPELSSGPDQAAYLVTAKAMFMRLQGAWDRNEQGDLFELTT 234 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 + F ++ + + V D ++++ + +++R Sbjct: 235 PEM---FARLKQDLETRGREPSHTEVPQLDAEVLSTQSNADETLVSVRFY---------- 281 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + D + +IW V+ + W L + + Sbjct: 282 -GQIREDDAQTAQPFQEIWNLVKQ-TQGDQAWRLAGIQQID 320 >gi|114676397|ref|XP_512553.2| PREDICTED: 39S ribosomal protein L45, mitochondrial [Pan troglodytes] Length = 306 Score = 80.7 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 2/139 (1%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I +F KDF +A++ + + LV + D + + Sbjct: 122 IRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKTV 181 Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 V+S + + IT+R+ + A YD+ L+ ++ Sbjct: 182 RWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKD 241 Query: 206 VIDIWTFVRNIPPSNPNWV 224 V++ F + + +W Sbjct: 242 VLEYVVFEKQLTNPYGSWR 260 >gi|27380918|ref|NP_772447.1| hypothetical protein bll5807 [Bradyrhizobium japonicum USDA 110] gi|27354084|dbj|BAC51072.1| bll5807 [Bradyrhizobium japonicum USDA 110] Length = 333 Score = 80.7 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 67/224 (29%), Gaps = 26/224 (11%) Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 S +++ + FV +L S + + + + Sbjct: 133 SSILGLIIQIVLVVFVV-RL------------AMSWWQRRHTPQAAYANADAGSGPGPQT 179 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 L G N +I V D + F + ++ V + Sbjct: 180 SYRSGLGGGLGGFGFGANNAPLEIKPV----DYEAF----ERLLGDVQTAWSNEDVAKLH 231 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 L + F L ++ K + V + + A E T Y T+ + Sbjct: 232 TLATPEMVSYFEQDLGQNRARNVVNKVTNVKLLQGDLAEAWREGETDYATVALRFALTDK 291 Query: 188 SYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + D++ +++ E G+V ++WTF R W L + + Sbjct: 292 TLDRNTGAVVAGS-EQPGEVTEVWTFARR---PGGTWELSAIQQ 331 >gi|195158248|ref|XP_002020004.1| GL13752 [Drosophila persimilis] gi|194116773|gb|EDW38816.1| GL13752 [Drosophila persimilis] Length = 352 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 74/205 (36%), Gaps = 13/205 (6%) Query: 28 RGVLGKKTGNEKPFS-----GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82 RGVL + E+PF G F ++ II+ K+K E + Sbjct: 85 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISSSGAKQK------LEFLEKKS 138 Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 + +R I S F F EA+ Y A + + I + V R Y + ++ Sbjct: 139 KSLIAVRKIRSYDESFSSDQFGAEAQEIYVAAHTLMAAKEKYKIREYVSERCYPEMMHNV 198 Query: 143 STRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + + + ++S + + E +T+R Q + A YD+ L+ Sbjct: 199 KDKTIHWRFLQSLEPPRVVHARCTEVITKENQFAQVTVRFHTQQMLAIYDRFGRLMHGSE 258 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225 + V++ F ++I W L Sbjct: 259 ILTKDVLEYVVFEKHISNEYGKWRL 283 >gi|298489454|ref|ZP_07007465.1| putative membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156028|gb|EFH97137.1| putative membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330890590|gb|EGH23251.1| Tim44-like domain-containing protein [Pseudomonas syringae pv. mori str. 301020] Length = 280 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 73/232 (31%), Gaps = 40/232 (17%) Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58 +F+ F IL+ I F +F R + ++ + + + S + + Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPYQRESSQPAQN 140 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 I G+ +++ F+ + FL AR ++++ + Sbjct: 141 PI-------------------FGSSSPASAAPVINAPAWFNEERFLEAARGHFQSLQQHW 181 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 ++ I + V ++ Q R +S+ + +++ + T+ Sbjct: 182 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTYIDNLQVQLDGVDDRADKTIATL 238 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G S+ +D + + W R + P W++ + Sbjct: 239 TFSGVSKSSRFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 278 >gi|195112778|ref|XP_002000949.1| GI22249 [Drosophila mojavensis] gi|193917543|gb|EDW16410.1| GI22249 [Drosophila mojavensis] Length = 362 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 76/205 (37%), Gaps = 13/205 (6%) Query: 28 RGVLGKKTGNEKPFS-----GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82 RGVL + E+PF G F ++ II+ K+K E + Sbjct: 87 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISSSGAKQK------LEFLEKKS 140 Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 + +R I S +F DF +A+ Y A + + I + V R Y + ++ Sbjct: 141 KSLMAIRKIRSYEENFSTDDFGAQAQEIYIAAHTHMAAKEKYKIREFVSERCYPEMMHNV 200 Query: 143 STRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + + + ++S + + E +T+R Q + A YD+ L+ Sbjct: 201 KDKTIHWRFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHTQQMLAIYDRFGRLMHGSE 260 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225 + V++ F ++I W L Sbjct: 261 ILSKDVLEYVVFEKHISNEYGKWRL 285 >gi|34304322|ref|NP_115727.3| 39S ribosomal protein L45, mitochondrial precursor [Homo sapiens] Length = 306 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 2/139 (1%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I +F KDF +A++ + + LV + D + + Sbjct: 122 IRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKTV 181 Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 V+S + + IT+R+ + A YD+ L+ ++ Sbjct: 182 RWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKD 241 Query: 206 VIDIWTFVRNIPPSNPNWV 224 V++ F + + +W Sbjct: 242 VLEYVVFEKQLTNPYGSWR 260 >gi|125773335|ref|XP_001357926.1| GA19976 [Drosophila pseudoobscura pseudoobscura] gi|54637660|gb|EAL27062.1| GA19976 [Drosophila pseudoobscura pseudoobscura] Length = 352 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 74/205 (36%), Gaps = 13/205 (6%) Query: 28 RGVLGKKTGNEKPFS-----GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82 RGVL + E+PF G F ++ II+ K+K E + Sbjct: 85 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISSSGAKQK------LEFLEKKS 138 Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 + +R I S F F EA+ Y A + + I + V R Y + ++ Sbjct: 139 KSLIAVRKIRSYDESFSSDQFGAEAQEIYVAAHTLMAAKEKYKIREYVSERCYPEMMHNV 198 Query: 143 STRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + + + ++S + + E +T+R Q + A YD+ L+ Sbjct: 199 KDKTIHWRFLQSLEPPRVVHARCTEVITKENQFAQVTVRFHTQQMLAIYDRFGRLMHGSE 258 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225 + V++ F ++I W L Sbjct: 259 ILTKDVLEYVVFEKHISNEYGKWRL 283 >gi|28872622|ref|NP_795241.1| hypothetical protein PSPTO_5517 [Pseudomonas syringae pv. tomato str. DC3000] gi|302133167|ref|ZP_07259157.1| hypothetical protein PsyrptN_17334 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855878|gb|AAO58936.1| conserved protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] gi|331017794|gb|EGH97850.1| hypothetical protein PLA106_17269 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 280 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 74/232 (31%), Gaps = 40/232 (17%) Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58 +F+ F IL+ I F +F R + ++ + + + + + + Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPYQRETSQPAQN 140 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 I G+ +++ F+ + FL+ AR ++++ + Sbjct: 141 PI-------------------FGSSSPASAAPVINAPAWFNEERFLDAARGHFQSLQQHW 181 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 ++ I + V ++ Q R +S+ + +++ + T+ Sbjct: 182 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTFIDNLHVQLDGLDDRADKTIATL 238 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D + + W R + P W++ + Sbjct: 239 TFSGVSKTSRFD-QGEV----------FSESWNMERPQGENQP-WLVAGIRQ 278 >gi|213968509|ref|ZP_03396652.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|301384751|ref|ZP_07233169.1| hypothetical protein PsyrptM_19042 [Pseudomonas syringae pv. tomato Max13] gi|302062457|ref|ZP_07253998.1| hypothetical protein PsyrptK_20918 [Pseudomonas syringae pv. tomato K40] gi|213926797|gb|EEB60349.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] Length = 280 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 74/232 (31%), Gaps = 40/232 (17%) Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58 +F+ F IL+ I F +F R + ++ + + + + + + Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPYQRETSQPAQN 140 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 I G+ +++ F+ + FL+ AR ++++ + Sbjct: 141 PI-------------------FGSSSPASAAPVINAPAWFNEERFLDAARGHFQSLQQHW 181 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 ++ I + V ++ Q R +S+ + +++ + T+ Sbjct: 182 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTFIDNLHVQLDGLDDRADKTIATL 238 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D + + W R + P W++ + Sbjct: 239 TFSGVSKTSRFD-QGEV----------FSESWNMERPQGENQP-WLVAGIRQ 278 >gi|303327521|ref|ZP_07357962.1| Tim44 domain protein [Desulfovibrio sp. 3_1_syn3] gi|302862461|gb|EFL85394.1| Tim44 domain protein [Desulfovibrio sp. 3_1_syn3] Length = 310 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 71/229 (31%), Gaps = 24/229 (10%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFS-----KRDERGIITLGKG 65 I++ + F+ L+L + +G + + D + + Sbjct: 99 MDIIIIGLL-VFLGLKLFARFRNRQAPAPAGAGAQGASTMGGLHGDLREDSASSQGMRRD 157 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVY--TDFDPKDFLNEARNSYEAIVDSFFEGKV 123 D + G + SV FD +FL A+ +Y + +S+ + + Sbjct: 158 NAAAGWDVLRNAPQGGAGQAQAFDAAPSVDVPQGFDVDEFLRGAKMAYSRLQNSWDKRDL 217 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 I + V + L E ++ V + + +++ + + + Sbjct: 218 DDIAQFATPAVLDAVREQLE----AEPTPSTTEVLLVNAQLLGVENDGDEQRAQVFFDVL 273 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 S D + V ++W FVR I +W L + + Sbjct: 274 MRE----------SPDQQAPSSVREVWHFVRPIA--GGSWKLDGIQQVD 310 >gi|225707976|gb|ACO09834.1| 39S ribosomal protein L45, mitochondrial precursor [Osmerus mordax] Length = 315 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 57/194 (29%), Gaps = 2/194 (1%) Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93 K + VF + K+ L E +R I Sbjct: 73 KQEYMERAINIACTAGVFDPYIPPEGDSRLSSLSKEGLKQRTEQIRQSAASQLAVRKIKE 132 Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153 T F K+F A+ Y ++ + + LV R Y + + + V+ Sbjct: 133 HDTTFTTKEFPGHAQGIYIEAHNALTQFNKEKLHSLVTERCYPEMTRANRYKTLRWTFVE 192 Query: 154 SSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWT 211 S + S +T+RI + A YD+ L+ E V++ Sbjct: 193 SLEPPKVVHARCPEMVSKGNLYGQVTLRIHSRQTLAIYDRFGRLMLGSEEEPKDVLEYLV 252 Query: 212 FVRNIPPSNPNWVL 225 R++ W L Sbjct: 253 LERHLINPYGRWRL 266 >gi|195331089|ref|XP_002032235.1| GM26453 [Drosophila sechellia] gi|194121178|gb|EDW43221.1| GM26453 [Drosophila sechellia] Length = 362 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 74/205 (36%), Gaps = 13/205 (6%) Query: 28 RGVLGKKTGNEKPFS-----GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82 RGVL + E+PF G F ++ II+ K+K E + Sbjct: 94 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQK------FEFLEKKS 147 Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 + +R I S +F DF EA++ Y + I + V R Y + ++ Sbjct: 148 KSLMAVRKIRSYDENFRSDDFGAEAQDIYIQAHTHMAAKDKYKIREFVSERCYPEMMHNV 207 Query: 143 STRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K ++S + + E +T+R Q + A YD+ L+ Sbjct: 208 KDKTIRWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLMHGSE 267 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225 I V++ F ++I W L Sbjct: 268 IITKDVLEYVVFEKHISNEYGKWRL 292 >gi|254693967|ref|ZP_05155795.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 3 str. Tulya] Length = 134 Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 4/130 (3%) Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163 L+ I + A+ KL + L S K + V + Sbjct: 8 LDRFEQMLVDIQGGYGREDYAALRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGD 67 Query: 164 IINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222 + A E N Y T+ + I D+ ++ +P + +++WTF R Sbjct: 68 VSEAWREGNVEYATVAMRYSAIDVVVDRTSGAVVEGNPNEPVESVELWTFTR---TDGGA 124 Query: 223 WVLISTKLGE 232 W L + + E Sbjct: 125 WQLAAIQGTE 134 >gi|289740307|gb|ADD18901.1| mitochondrial ribosomal protein L45 [Glossina morsitans morsitans] Length = 355 Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 13/205 (6%) Query: 28 RGVLGKKTGNEKPFS-----GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82 RGVL + E+PF G F +R II+ K+K + Sbjct: 82 RGVLPPRPWLERPFHISCTGGIFEPYVPPEGDGKRSIISAAGAKQK------FVFLEKKS 135 Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 + +R I + DF DF A++ Y + H + +LV R Y + ++ Sbjct: 136 KSMLAVRKIRNYEEDFSTDDFAAAAQDVYIGAHQTMALKDKHKLRELVTERCYPEIMHNV 195 Query: 143 STRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + + +KS + S E IT+R Q + A YD+ L+ Sbjct: 196 RDKTIHWSFLKSLEPPYVVHARVTDVISKENLFAQITVRFHTQQLLAIYDRFGRLMHGSE 255 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225 + V++ F ++I W L Sbjct: 256 IVAKDVLEYAVFEKHISNEYGKWRL 280 >gi|145349615|ref|XP_001419224.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579455|gb|ABO97517.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 221 Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 52/209 (24%), Gaps = 15/209 (7%) Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93 + G + + R E + + Sbjct: 2 RGGGVRVAQTSSNLIAEPYAGPPRRPTLAEWATTSKGWRYAYEAATSRAKDAYALSKCAK 61 Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKV-----HAIEKLVDSRVYQDFNDSLSTRKSN 148 F + F EA+ Y+ I S H + D +R+ Sbjct: 62 EVRGFTLEGFKQEAKQMYKMINASSANVGHGKTLEHETRHATTDKTQSDLKRERKSRERG 121 Query: 149 EKNVKSSLVGIDDMKII----------NASIEENTVYITIRIVGQFISASYDKDNLLISS 198 + D + N S +T R G+ A+YD L++ Sbjct: 122 GWARVDWNLESIDECQVVRGRLIMANANDSNGPGFAQLTTRFRGKQRFAAYDARGRLVAG 181 Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 DP+ V D W F + N W L Sbjct: 182 DPDEILDVEDFWVFEHGLKIPNARWRLAG 210 >gi|195444564|ref|XP_002069925.1| GK11306 [Drosophila willistoni] gi|194166010|gb|EDW80911.1| GK11306 [Drosophila willistoni] Length = 337 Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 68/200 (34%), Gaps = 3/200 (1%) Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87 RGVL + E+PF +G + E ++ Sbjct: 78 RGVLPPRPWMERPFHISCTGGIFEAYVP-PEGDGKKSLISSSGAKQKLEFLEKKSKSLMA 136 Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I S F +F + A+ Y A + + I + V R Y + ++ + Sbjct: 137 VRKIRSYEESFSTDEFGDHAQEIYIAAHTHMAAREKYKIREFVSERCYPEMMHNVKDKTI 196 Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 + + ++S + + E +T+R Q + A YD+ L+ + Sbjct: 197 HWRFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHTQQMLAIYDRFGRLMHGSEILTKD 256 Query: 206 VIDIWTFVRNIPPSNPNWVL 225 V++ F ++I W L Sbjct: 257 VLEYVVFEKHISNEYGKWRL 276 >gi|29611869|sp|Q9BRJ2|RM45_HUMAN RecName: Full=39S ribosomal protein L45, mitochondrial; Short=L45mt; Short=MRP-L45; Flags: Precursor gi|120660040|gb|AAI30383.1| Mitochondrial ribosomal protein L45 [Homo sapiens] gi|120660352|gb|AAI30385.1| Mitochondrial ribosomal protein L45 [Homo sapiens] gi|313883266|gb|ADR83119.1| mitochondrial ribosomal protein L45 [synthetic construct] Length = 306 Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 2/139 (1%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I +F KDF +A++ + + LV + D + + Sbjct: 122 IRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKTV 181 Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 V+S + + IT+R+ + A YD+ L+ ++ Sbjct: 182 RWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKD 241 Query: 206 VIDIWTFVRNIPPSNPNWV 224 V++ F + + +W Sbjct: 242 VLEYVVFEKQLTNPYGSWR 260 >gi|297836804|ref|XP_002886284.1| mitochondrial import inner membrane translocase subunit TIM44 [Arabidopsis lyrata subsp. lyrata] gi|297332124|gb|EFH62543.1| mitochondrial import inner membrane translocase subunit TIM44 [Arabidopsis lyrata subsp. lyrata] Length = 477 Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 6/193 (3%) Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100 S K D R I + +NE+F T ++I + F Sbjct: 275 MSEPVVNKSQEIAEDVREIWETSDNPIVHKIQDMNEMFLKETDSASTYKEIRNRDPSFSL 334 Query: 101 KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160 DF E +++++ EG V ++K V + L+ +++ + L+ I Sbjct: 335 PDFAAEIEEVIRPVLNAYSEGDVETLKKYCSKEVIERCTAELTAYQTHGFFFDNKLLHIS 394 Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS- 219 D+++ + ++ I + Q I D++ + + V W + Sbjct: 395 DVRVSVTKMMGDSPIIIAKFQTQEIYCVRDENGEIQEGGQDTIHTVYHEWAMQQVEATEF 454 Query: 220 -----NPNWVLIS 227 P W L Sbjct: 455 GEDAIYPIWRLRE 467 >gi|330952408|gb|EGH52668.1| Tim44-like domain-containing protein [Pseudomonas syringae Cit 7] Length = 280 Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 75/232 (32%), Gaps = 40/232 (17%) Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58 +F+ F IL+ I F +F R + ++ + + + + + + Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPYQRETSQPAQN 140 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 I G+ +++ F+ + FL+ AR ++++ + Sbjct: 141 PI-------------------FGSSSPASAAPVINAPAWFNEQRFLDAARGHFQSLQQHW 181 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 ++ I + V ++ Q R +S+ + ++++ + T+ Sbjct: 182 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTYIENLNVQLDGVDDRADKTIATL 238 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D + + W R + P W++ + Sbjct: 239 TFSGVSKTSRFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 278 >gi|307109340|gb|EFN57578.1| hypothetical protein CHLNCDRAFT_51139 [Chlorella variabilis] Length = 395 Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 64/230 (27%), Gaps = 28/230 (12%) Query: 26 QLRGVLGKK---TGNEKPFSGFFSGKY----------VFSKRDERGIITLGKGKKKDNLD 72 + +G K +G P + + R L Sbjct: 75 RGYAKMGTKMPHSGYNPPADMNKAMQMRLSMVSPNLLAEPYRGVPPPQPLTSYFTIRGWK 134 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + + + F+ F E+ Y I +G+ ++ +LV Sbjct: 135 ERWQRTLSQFKSMYTLAKCKKYVPGFNRNAFKQESLELYRDICRLLAQGERGSLRQLVTP 194 Query: 133 RVYQDFNDSLSTRK--------------SNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 V+ D L R+ + + V + I +T+ Sbjct: 195 AVFSDMKRQLKQREDPAAGRACSGTSSGWEPTVDELTTVHGRLIMINPKDETSGFAQLTV 254 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN-WVLIS 227 RI A+YDK L++ DPE V D W F S N W L Sbjct: 255 RIPSAQRFAAYDKAGKLVAGDPEQSIDVEDYWVFEHAFKASPANRWRLAG 304 >gi|85715641|ref|ZP_01046621.1| hypothetical protein NB311A_18371 [Nitrobacter sp. Nb-311A] gi|85697580|gb|EAQ35457.1| hypothetical protein NB311A_18371 [Nitrobacter sp. Nb-311A] Length = 330 Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 51/179 (28%), Gaps = 9/179 (5%) Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 +R + G + T D + F Sbjct: 159 QRRNAPAYAGPTPGPTSGPAAAQTNARSGLGFGSMANAAPLEITQEDYEAF----ERLLG 214 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 I ++ V+ + L + F + L + K S V + + A E Sbjct: 215 EIQTAWSNEDVNTLHALATPEMVSYFTEDLQANDARGVVNKVSDVKLLQGDLAEAWREGM 274 Query: 173 TVYITIRIVGQFISASYDKDN-LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 T Y T+ + I + ++ ++ + + D+WTF R W L + + Sbjct: 275 TDYATVALRYSLIDKTIERAGGRIVEGS-DQPQEATDVWTFARR---GGGKWELSAIQQ 329 >gi|150397061|ref|YP_001327528.1| import inner membrane translocase subunit Tim44 [Sinorhizobium medicae WSM419] gi|150028576|gb|ABR60693.1| import inner membrane translocase subunit Tim44 [Sinorhizobium medicae WSM419] Length = 333 Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 59/197 (29%), Gaps = 10/197 (5%) Query: 37 NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT 96 N++P S S + + P +I Sbjct: 145 NQRPAYSAPSATARTSATAGNPPSFRIPRIGEAVGSAAAPRSPAAAPAYGGGEEISVGQD 204 Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 D D + + ++ A+ +L + LS + + Sbjct: 205 DLDR------FETMLKGVQAAYGAEDYAALRRLTTPEAMSYLAEELSDNATKGLKNEVRD 258 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRN 215 V + + A + Y T+ + + + D+ ++S D + + ++IWTFVR Sbjct: 259 VHLVQGDLAEAWRGDGRDYATVAMRYESVDVMRDRATGDVVSGDADRPTEAVEIWTFVRR 318 Query: 216 IPPSNPNWVLISTKLGE 232 +W + + + E Sbjct: 319 ---PGADWQVSAIQGVE 332 >gi|91806216|gb|ABE65836.1| mitochondrial import inner membrane translocase subunit TIM44 [Arabidopsis thaliana] Length = 474 Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 62/193 (32%), Gaps = 6/193 (3%) Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100 S K D R I + +NE F T ++I S F Sbjct: 272 MSEPVVNKSQEIAEDVREIWETSDNPIVHKIQDMNEKFLKETDSASTYKEIRSRDPSFSL 331 Query: 101 KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160 DF E + +++++ EG V ++K V + + +++ + L+ I Sbjct: 332 PDFAAEIEEVIKPVLNAYSEGDVETLKKYCSKEVIERCTAERTAYQTHGVLFDNKLLHIS 391 Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS- 219 ++ + + ++ I + Q I D++ + + V W + Sbjct: 392 EVSVSVTKMMGDSPIIIAKFQTQEIYCVRDENGEIQEGGQDTIHTVYHEWAMQQVETTEL 451 Query: 220 -----NPNWVLIS 227 P W L Sbjct: 452 GEDAIYPIWRLRE 464 >gi|303284301|ref|XP_003061441.1| mitochondrial protein translocase family [Micromonas pusilla CCMP1545] gi|226456771|gb|EEH54071.1| mitochondrial protein translocase family [Micromonas pusilla CCMP1545] Length = 289 Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 78/211 (36%), Gaps = 13/211 (6%) Query: 27 LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK 86 L V K G ++ + + + R+ K + + F T + Sbjct: 71 LTSVFSKLQGLKRTPAYQKTEDALEDLRERWETSENPMVHK---IQDSVDGFFQETEQGE 127 Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE-KLVDSRVYQDFNDSLSTR 145 R I + F+ DFL E R I+ ++ +G V A+ V + + + + + Sbjct: 128 AYRAIRARAPTFNINDFLAEVRRDVPKILGAYLKGDVDALAMTNVSNEMMERMSGQMRAW 187 Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 ++ +K V ++ + D++++ + E + + Q I+ D +++ + Sbjct: 188 EAEQKFVDPRVLHLGDVELVETRMMEGAPLVVTQFQCQQINCVRDASGVIVEGAEDDIQA 247 Query: 206 VIDIWTFV---RNIPPSN------PNWVLIS 227 V +W + + ++ P WVL Sbjct: 248 VHYLWAMQLVDKELVAADGRKYVAPTWVLRE 278 >gi|241999542|ref|XP_002434414.1| conserved hypothetical protein [Ixodes scapularis] gi|215497744|gb|EEC07238.1| conserved hypothetical protein [Ixodes scapularis] Length = 333 Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 71/200 (35%), Gaps = 3/200 (1%) Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87 +GV + E+P SG G + ++ + + L G + V Sbjct: 80 KGVAPGRVWMERPIYTSCSGGLFDPYVPPEGDGKMSLLSQEGAMQRMRRLEKKGRSVMNV 139 Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 R I S DF +F +A+ Y + + E + +LV Y + ++ + Sbjct: 140 -RKIRSYEDDFHLAEFAEQAQQIYIDVHRALAEKNKDKLHELVTENCYPELMQNVVNKTL 198 Query: 148 NEKNVKSSLV--GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 + +KS + S + +T+R+ Q A YD+ L+ + Sbjct: 199 RWQFIKSLEPPRAVHVRCEDLISKDNMFGQVTVRMHTQQTLAVYDRFGRLMHGSEVMAKD 258 Query: 206 VIDIWTFVRNIPPSNPNWVL 225 V++ F +++ W + Sbjct: 259 VLEYVVFEKHLSDLYGTWRV 278 >gi|195395288|ref|XP_002056268.1| GJ10851 [Drosophila virilis] gi|194142977|gb|EDW59380.1| GJ10851 [Drosophila virilis] Length = 362 Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 69/200 (34%), Gaps = 3/200 (1%) Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87 RGVL + E+PF +G + E ++ Sbjct: 88 RGVLPPRPWMERPFHISCTGGIFEAYVP-PEGDGKKSIISSSGTKQKLEFLEKKSKSLMA 146 Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I + +F DF +A+ Y A + + I + V R Y + ++ + Sbjct: 147 VRKIRAYEENFSSDDFGVQAQEIYIAAHTHMAAKEKYKIREFVSERCYPEMMHNVKDKTI 206 Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 + + ++S + + E +T+R Q + A YD+ L+ + Sbjct: 207 HWRFLQSLEPPRVVHARVTEVITKENLFAQVTVRFHTQQMLAIYDRFGRLMHGSEIVTKD 266 Query: 206 VIDIWTFVRNIPPSNPNWVL 225 V++ F ++I W L Sbjct: 267 VLEYVVFEKHISNEYGKWRL 286 >gi|18399377|ref|NP_565473.1| ATTIM44-1; protein-transmembrane transporting ATPase [Arabidopsis thaliana] gi|20198086|gb|AAD25651.2| putative mitochondrial inner membrane translocating protein [Arabidopsis thaliana] gi|330251926|gb|AEC07020.1| translocase inner membrane subunit 44-1 [Arabidopsis thaliana] Length = 472 Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 62/193 (32%), Gaps = 6/193 (3%) Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100 S K D R I + +NE F T ++I S F Sbjct: 270 MSEPVVNKSQEIAEDVREIWETSDNPIVHKIQDMNEKFLKETDSASTYKEIRSRDPSFSL 329 Query: 101 KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160 DF E + +++++ EG V ++K V + + +++ + L+ I Sbjct: 330 PDFAAEIEEVIKPVLNAYSEGDVETLKKYCSKEVIERCTAERTAYQTHGVLFDNKLLHIS 389 Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS- 219 ++ + + ++ I + Q I D++ + + V W + Sbjct: 390 EVSVSVTKMMGDSPIIIAKFQTQEIYCVRDENGEIQEGGQDTIHTVYHEWAMQQVETTEL 449 Query: 220 -----NPNWVLIS 227 P W L Sbjct: 450 GEDAIYPIWRLRE 462 >gi|73960044|ref|XP_855187.1| PREDICTED: similar to 39S ribosomal protein L45, mitochondrial precursor (L45mt) (MRP-L45) [Canis familiaris] Length = 213 Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 51/141 (36%), Gaps = 6/141 (4%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I +F KDF +A++ + + LV + D + + Sbjct: 42 IRKIREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIKYKMV 101 Query: 148 NEKNVK----SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203 + V+ +V + ++N +T+R + A YD+ L+ ++ Sbjct: 102 HWSFVESLEPPQVVQVCCSNLLN--QGNIYSQVTVRKHTRQTLAIYDRFGRLMYGQEDVP 159 Query: 204 GKVIDIWTFVRNIPPSNPNWV 224 V++ F +++ +W Sbjct: 160 RDVLEYVVFEKHLVNPYGSWR 180 >gi|194746347|ref|XP_001955642.1| GF18867 [Drosophila ananassae] gi|190628679|gb|EDV44203.1| GF18867 [Drosophila ananassae] Length = 360 Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 72/205 (35%), Gaps = 13/205 (6%) Query: 28 RGVLGKKTGNEKPFS-----GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82 RGVL + E+PF G F ++ II+ K+K E + Sbjct: 92 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISSSGAKQK------LEFLEKKS 145 Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 + +R I S F +F EA+ Y + I + V R Y + ++ Sbjct: 146 KSLMAVRKIRSYEESFSSDEFGAEAQEIYIKAHQHMAAKDKYQIREYVSERCYPEMMHNV 205 Query: 143 STRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + + ++S + + E +T+R Q + A YD+ L+ Sbjct: 206 KDKTIRWRFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLMHGSE 265 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225 + V++ F ++I W L Sbjct: 266 ILTKDVLEYVVFEKHISNEYGKWRL 290 >gi|146341888|ref|YP_001206936.1| putative signal peptide [Bradyrhizobium sp. ORS278] gi|146194694|emb|CAL78719.1| conserved hypothetical protein; putative signal peptide [Bradyrhizobium sp. ORS278] Length = 324 Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 50/181 (27%), Gaps = 5/181 (2%) Query: 52 SKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY 111 +R++ + D S + Sbjct: 147 QRRNQPAYASGPTPGPNDGQQSFRSGLSGLGGGFGGFGGGSNQPPLQIQPADYEAFERLL 206 Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171 I ++ V + L + F L ++ K + V + + + E Sbjct: 207 GEIQSAWSNEDVGRLRLLSTPEMASYFERDLEQNQARGVVNKVTGVKLLQGDLAESWREN 266 Query: 172 NTVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 Y T+ + + ++ ++ + +V +IWTF+R+ W L + + Sbjct: 267 GADYATVAMRFTLADKTIERASGRVVEGS-DQPQEVTEIWTFLRHPGAD---WQLSAIQQ 322 Query: 231 G 231 Sbjct: 323 V 323 >gi|330964447|gb|EGH64707.1| Tim44-like domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 281 Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 75/232 (32%), Gaps = 40/232 (17%) Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58 +F+ F IL+ I F +F R + ++ + + + + + + Sbjct: 85 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPYQRETSQPAQN 141 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 I G+ +++ F+ + FL+ AR ++++ + Sbjct: 142 PI-------------------FGSSSPASAAPVINAPAWFNEERFLDAARGHFQSLQQHW 182 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 ++ I + V ++ Q R +S+ + ++++ + T+ Sbjct: 183 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTYIENLNVQLDGVDDRADKTIATL 239 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D + + W R + P W++ + Sbjct: 240 TFSGVSKTSRFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 279 >gi|254689480|ref|ZP_05152734.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 6 str. 870] gi|256257728|ref|ZP_05463264.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 9 str. C68] Length = 134 Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 4/130 (3%) Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163 L+ I + A+ KL + L S K + V + Sbjct: 8 LDRFEQMLVDIQGGYGREDYAALRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGD 67 Query: 164 IINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222 + A E N Y T+ + I D+ ++ +P + +++WTF R Sbjct: 68 VSEAWREGNVEYATVAMRYSAIDVMVDRTSGAVVEGNPNEPVESVELWTFTR---TDGGA 124 Query: 223 WVLISTKLGE 232 W L + + E Sbjct: 125 WQLAAIQGTE 134 >gi|257094387|ref|YP_003168028.1| import inner membrane translocase subunit Tim44 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046911|gb|ACV36099.1| import inner membrane translocase subunit Tim44 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 300 Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 71/223 (31%), Gaps = 30/223 (13%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 +L+ A + F V+ ++ ++P G + G + + Sbjct: 108 MIGLLVVAVMVAIGF-----VMRRRAAAQQPALAGAGGFQYAAPDALNGGMARVEAGP-- 160 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + + ++ DFD + F+ A+ S+ + + G + I + Sbjct: 161 --------SMPAGTSTEAVTAGGNIPADFDVEGFVRNAKISFIRLQAANDAGNLDDIREF 212 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + F + + + V D ++++ + EE+ +++R Sbjct: 213 TTPEM---FAEVRMNIADRGPVAQETDVVSIDAQVLDVAEEESRYLVSVRF--------- 260 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 L+ V +IW ++ + WVL + + Sbjct: 261 --TGLIREDKAAAPEPVDEIWHLIKPRDGKSG-WVLAGIQQVQ 300 >gi|90423037|ref|YP_531407.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisB18] gi|90105051|gb|ABD87088.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisB18] Length = 332 Score = 79.6 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 54/186 (29%), Gaps = 9/186 (4%) Query: 46 SGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLN 105 + + G D + + G+ D + F Sbjct: 153 QRRNAAAPAAASASAYAGPAAGPDVGPGAQQNYRTGSGFGIGATAAPLEIGPADYEAF-- 210 Query: 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165 I ++ G V + L + F+ L+ K+ K S V + + Sbjct: 211 --EKLLSEIQTTWSNGDVGHLHTLATPEMVSYFSGDLAANKARGVENKVSDVKLLQGDLA 268 Query: 166 NASIEENTVYITIRIVGQFISASYD-KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 A E T Y ++ + + + D L+ E + ++WTF R W Sbjct: 269 EAWREGETDYASVAMRFSLVDKTIDTATGKLVEGS-EQPTEATEVWTFARRRGSE---WE 324 Query: 225 LISTKL 230 L + + Sbjct: 325 LSAIQQ 330 >gi|33591411|ref|NP_879055.1| hypothetical protein BP0162 [Bordetella pertussis Tohama I] gi|33571053|emb|CAE40541.1| putative membrane protein [Bordetella pertussis Tohama I] Length = 340 Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 73/231 (31%), Gaps = 20/231 (8%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKK--TGNEKPFSGFFSGKYVFSKRDERGII 60 F + + LI L F F+ +LRG ++ G G G+ + Sbjct: 120 FAEFMASMLLIALVVFAVIFIVRRLRGGAPRQAMQGAYGAAGGNRPGQPSQQPMWRESLN 179 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRD-IVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + L K D + DFD FL +A++ + I + Sbjct: 180 PAPAQQPAAAPVAAAAPAAAAAALPKAGDDGNWFIPGDFDTPRFLQQAKDQFVRIQGIWD 239 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 G+V ++ + + + L R + V + + +++ + ++R Sbjct: 240 SGEVESLRDFLTDDLISELKPQLEAR---GAAANKTEVVLLNAELLGIETVSDGHLASVR 296 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +L + + ++W + ++ W+L + Sbjct: 297 F-----------SGMLREAPGTEAFRFEEVWNLFKP---ADGGWLLAGIQQ 333 >gi|33598497|ref|NP_886140.1| hypothetical protein BPP3994 [Bordetella parapertussis 12822] gi|33574626|emb|CAE39277.1| putative membrane protein [Bordetella parapertussis] Length = 340 Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 73/231 (31%), Gaps = 20/231 (8%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKK--TGNEKPFSGFFSGKYVFSKRDERGII 60 F + + LI L F F+ +LRG ++ G G G+ + Sbjct: 120 FAEFMASMLLIALVVFAVIFIVRRLRGGAPRQAMQGAYGAAGGNRPGQPSQQPMWRESLN 179 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRD-IVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + L K D + DFD FL +A++ + I + Sbjct: 180 PAPAQQPAAAPVAAAAPAAAAAALPKAGDDGNWFIPGDFDTPRFLQQAKDQFVRIQGIWD 239 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 G+V ++ + + + L R + V + + +++ + ++R Sbjct: 240 SGEVESLRDFLTDDLISELKPQLEAR---GAAANKTEVVLLNAELLGIETVSDGHLASVR 296 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +L + + ++W + ++ W+L + Sbjct: 297 F-----------SGMLREAPGTEAFRFEEVWNLFKP---ADGGWLLAGIQQ 333 >gi|300692535|ref|YP_003753530.1| hypothetical protein RPSI07_2910 [Ralstonia solanacearum PSI07] gi|299079595|emb|CBJ52273.1| conserved membrane protein of unknown function [Ralstonia solanacearum PSI07] Length = 345 Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 28/246 (11%), Positives = 64/246 (26%), Gaps = 41/246 (16%) Query: 13 ILLFAFITFFVFLQLRGVLGKKT-------------GNEKPFSGFFSGKYVFSKRDERGI 59 ++L A I F V +R + G + G+ +P+ + Sbjct: 115 LILIAIIAFVVMWIIRKLRGSRPQEPAYATGGPSLGGDREPYVPSPAVPAAQPAAPVASS 174 Query: 60 ITLGKGKKKDNLD-------------SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNE 106 I G L + V DFD + FL Sbjct: 175 IDTGSTGSTSGLGAGAQTAAQAWSLGGPAAPTANAPVAAPASQQPWGVPADFDTQAFLRN 234 Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN 166 A+ + + ++ ++ I + + F + + V + +++ Sbjct: 235 AKVYFIRLQAAWDTANLNDIREFTTPEM---FAEIKMDLADRGTAPNKTDVVSVEAELLG 291 Query: 167 ASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 ++R ++ ++W + I + WVL Sbjct: 292 IETSPTEYLASVRF-----------AGMIREEANAPAQPFAEVWNLTKPI-QGSGGWVLA 339 Query: 227 STKLGE 232 + + Sbjct: 340 GIQQLQ 345 >gi|47077699|dbj|BAD18730.1| unnamed protein product [Homo sapiens] Length = 306 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 2/139 (1%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I +F KDF +A++ + + LV + D + + Sbjct: 122 IRRIKDYDANFKIKDFPGKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKTV 181 Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 V+S + + IT+R+ + A YD+ L+ ++ Sbjct: 182 RWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKD 241 Query: 206 VIDIWTFVRNIPPSNPNWV 224 V++ F + + +W Sbjct: 242 VLEYVVFEKQLTNPYGSWR 260 >gi|312797306|ref|YP_004030228.1| hypothetical protein RBRH_02101 [Burkholderia rhizoxinica HKI 454] gi|312169081|emb|CBW76084.1| Hypothetical protein RBRH_02101 [Burkholderia rhizoxinica HKI 454] Length = 367 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 72/229 (31%), Gaps = 26/229 (11%) Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKT------GNEKPFSGFFSGKYVFSKRDERGIIT 61 S LI L A + ++F + + G E P + + T Sbjct: 157 SNVILIALVALVGLWLFRKFANRNARPATAYAHGGFESPSGASLRQYDASAAAPSQLPAT 216 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 G G+ D + + + L D+ +V FD F+ +A+ ++ + ++ G Sbjct: 217 GGMGQAGVAPDGQSRVAADPSVL-----DVPAVPAGFDADAFIRQAKVAFVRLQAAWDAG 271 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 + I + ++ + +R + +V ++ + N ++R Sbjct: 272 NLDDIREFTTPEMFAEIKLDFDSRHGENRTD---VVQLNADLVGVEDRGGNEYVASVRFH 328 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 LL + ++W RN WVL + Sbjct: 329 -----------GLLRETQGAAAEPFAEMWNLSRNARSGEG-WVLAGIQQ 365 >gi|297538333|ref|YP_003674102.1| import inner membrane translocase subunit Tim44 [Methylotenera sp. 301] gi|297257680|gb|ADI29525.1| import inner membrane translocase subunit Tim44 [Methylotenera sp. 301] Length = 290 Score = 78.8 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 62/218 (28%), Gaps = 27/218 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 +L A + V + L +KP + + + Sbjct: 96 TILMALLAAGVVMFLIS------KFKKPQPANNFNPSTVMQYAGESAYNAQDSQSQA--- 146 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 G N ++ +F F+ A+ S+ + + + I + Sbjct: 147 ---RSGASGFGANAANSINSNIPPNFPVDSFIRSAKASFIRLQAANDNKDSNDIREYTTP 203 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 V F + + V+ + V +++ + + ++R GQ Sbjct: 204 EV---FAEITMQMQERGNAVQKTEVIAIQAELLEVNDDAVFSVASVRFTGQL-------- 252 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S + + ++W +++ N W+L + Sbjct: 253 ----SENNGTPENIDEVWHIQKHLHDENAKWLLAGIQQ 286 >gi|296157950|ref|ZP_06840783.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. Ch1-1] gi|295891718|gb|EFG71503.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. Ch1-1] Length = 320 Score = 78.8 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 22/229 (9%), Positives = 64/229 (27%), Gaps = 23/229 (10%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 +M S ++ + + + + ++ + + + Sbjct: 114 AQMLSNAL-LIGLVVVAGVMLFRF--IANRRR---PDLAYGHGSANRQQTNGSPFLNQVR 167 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 + + NL T ++ D FL A+ + + ++ + Sbjct: 168 EARPDTNLRDWPRAAMGTTGAAGSVKAP--EPALADQAAFLVSAKAMFMRLQGAWDRNEQ 225 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 + +L + F + + V D +++ + +++R Sbjct: 226 GDLFELTTPEM---FMRLKQDLEHRGHEPSRTDVTQLDAEVLGTESNADETLVSVRFY-- 280 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + D +I +IW VR++ + W L + + Sbjct: 281 ---------GQMREDDAQIAQPFQEIWNMVRSV-HGDEGWRLAGIQQID 319 >gi|298205045|emb|CBI34352.3| unnamed protein product [Vitis vinifera] Length = 196 Score = 78.8 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 9/154 (5%) Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 L + + F EA + Y+ I ++ K V +Y + + Sbjct: 39 ELKSAYAVAKLRKIGYSRQKFYTEAVDLYKEINSQIANSAKASLRKSVTENMYSALKNEI 98 Query: 143 STRKSNEKNVKSSLVGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 R+S V +V + I + + + +T+ + + +YD Sbjct: 99 KQRESKWHKVYWEMVEPVVKIRTLRARMISIDRNDMNKAFIQLTLEFLTKQKFEAYDSKG 158 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 +++ D + V D+W F R++ W L Sbjct: 159 CVVAGDKDKEVLVRDVWVFERSLFHPGAYWRLCG 192 >gi|219884429|gb|ACL52589.1| unknown [Zea mays] Length = 303 Score = 78.8 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 54/140 (38%), Gaps = 9/140 (6%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 + F ++A Y+ + G ++ +++ R++ + L R+S +V L Sbjct: 160 GYTKNQFYDQALKIYKEVNTLMAHGDTSSLREILTERMHSTIKNELKRRQSMWNSVHWEL 219 Query: 157 VGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 V + + +++ + +T+ V + +Y+ ++S D V Sbjct: 220 VEPAVSIRTLRARMIGLDKNDLDKAFIQLTLEFVTKQKFEAYNSKGAVVSGDKSKEVLVK 279 Query: 208 DIWTFVRNIPPSNPNWVLIS 227 DIW F R++ W + Sbjct: 280 DIWVFERSLFHPGAYWRVCG 299 >gi|260884014|ref|ZP_05895628.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 9 str. C68] gi|260873542|gb|EEX80611.1| import inner membrane translocase subunit Tim44 [Brucella abortus bv. 9 str. C68] Length = 139 Score = 78.8 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 4/130 (3%) Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163 L+ I + A+ KL + L S K + V + Sbjct: 13 LDRFEQMLVDIQGGYGREDYAALRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGD 72 Query: 164 IINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222 + A E N Y T+ + I D+ ++ +P + +++WTF R Sbjct: 73 VSEAWREGNVEYATVAMRYSAIDVMVDRTSGAVVEGNPNEPVESVELWTFTR---TDGGA 129 Query: 223 WVLISTKLGE 232 W L + + E Sbjct: 130 WQLAAIQGTE 139 >gi|262369516|ref|ZP_06062844.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262315584|gb|EEY96623.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 321 Score = 78.8 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 64/221 (28%), Gaps = 19/221 (8%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 ILL A + F + + KK S + F ++ + Sbjct: 117 IWILLAAAVA-FFIFR-KMGAKKKVAANPYAPNNGSTQAPFGQQAAPRTSNDNSNIFGQS 174 Query: 71 LDSINELFPIGTRLNKVMRDI-VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + + + +P FL AR + I + I++ Sbjct: 175 VGGSAATPQNNAPFGAAYTNSGSQLPDGTEPAAFLRIARQRFNHIQSMNTASNISEIQRY 234 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 + +YQ + ++ + + + +++ E + +++R Sbjct: 235 LTPDLYQSMYQDIM----ANQDQDVAEFSNLNAMVADSATENSQYVVSVRF--------- 281 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + + ++W FV+ + +W++ + Sbjct: 282 --TGTVSEDLNSLPQPFAEVWHFVKPAGSTQ-DWLVAGIQQ 319 >gi|115920949|ref|XP_793386.2| PREDICTED: similar to MGC53772 protein [Strongylocentrotus purpuratus] gi|115935455|ref|XP_001189066.1| PREDICTED: similar to MGC53772 protein [Strongylocentrotus purpuratus] Length = 338 Score = 78.8 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 59/202 (29%), Gaps = 5/202 (2%) Query: 27 LRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRL 84 LR G + G ++ F + E Sbjct: 83 LRNA-GIRPGQQYQERAITITCTGDFFEPYIPPEGDGKASSLTTEGAKQRLERVKNVGVT 141 Query: 85 NKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST 144 R I +F DF +A+ Y ++ + H + LV + Y + Sbjct: 142 QMAQRKIRQFEPEFTTTDFAWKAQQIYVDAHNALQDFDRHLLHSLVTEKCYPEMIAGFRY 201 Query: 145 RKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI 202 + K ++S + + +T+R + A YD+ ++ ++ Sbjct: 202 KTIRWKMLESIEKPRIVHMRCTDMINKGNIYGQVTVRFHTRQTLAIYDRFGRIMVGSEDV 261 Query: 203 FGKVIDIWTFVRNIPPSNPNWV 224 V++ F +++P W Sbjct: 262 LKDVLEYVVFEKHLPHRYGTWR 283 >gi|66048290|ref|YP_238131.1| import inner membrane translocase, subunit Tim44 [Pseudomonas syringae pv. syringae B728a] gi|63258997|gb|AAY40093.1| Mitochondrial import inner membrane translocase, subunit Tim44 [Pseudomonas syringae pv. syringae B728a] Length = 281 Score = 78.8 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 72/232 (31%), Gaps = 39/232 (16%) Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58 +F+ F IL+ I F +F R + ++ + + + Y Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPPYQRETSQPAQ 140 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 G+ +++ F+ + FL+ AR ++++ + + Sbjct: 141 NPIF------------------GSSSPASAAPVINAPAWFNEQRFLDAARGHFQSLQEHW 182 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 ++ I + V ++ Q R +S+ + +++ + T+ Sbjct: 183 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTFIENLQVQLDGVDDRADKTIATL 239 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D + + W R + P W++ + Sbjct: 240 TFSGVSKTSRFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 279 >gi|332380812|gb|AEE65659.1| hypothetical protein BPTD_0159 [Bordetella pertussis CS] Length = 334 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 71/228 (31%), Gaps = 20/228 (8%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F + + LI L F F+ +LRG + + + + + +L Sbjct: 120 FAEFMASMLLIALVVFAVIFIVRRLRGG-APRQAMQGAYGAAGGNRPGQPSQQPMWRESL 178 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 + + + + DFD FL +A++ + I + G+ Sbjct: 179 NPAPAQQPAAAPAAAAAALPKAGD--DGNWFIPGDFDTPRFLQQAKDQFVRIQGIWDSGE 236 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 V ++ + + + L R + V + + +++ + ++R Sbjct: 237 VESLRDFLTDDLISELKPQLEAR---GAAANKTEVVLLNAELLGIETVSDGHLASVRF-- 291 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +L + + ++W + ++ W+L + Sbjct: 292 ---------SGMLREAPGTEAFRFEEVWNLFKP---ADGGWLLAGIQQ 327 >gi|283851351|ref|ZP_06368633.1| import inner membrane translocase subunit Tim44 [Desulfovibrio sp. FW1012B] gi|283573301|gb|EFC21279.1| import inner membrane translocase subunit Tim44 [Desulfovibrio sp. FW1012B] Length = 309 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 28/205 (13%), Positives = 60/205 (29%), Gaps = 23/205 (11%) Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87 R + ++T +E P + + + + ++ G Sbjct: 127 RFIRSRRTASEGPSMAR-----TYEAAPVPPVREPLREAAANGWSNLGASPQAGASAPAG 181 Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 V FD DFL A+ + + S+ + I F + + + + Sbjct: 182 ----PQVPAGFDVDDFLTGAKALFGRLQKSWSARDLADIAAFSTPA----FMEDVRKQAA 233 Query: 148 NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 + + V + D K++ + T + + PE V Sbjct: 234 ADPTPTPTDVLLVDAKLLEVRSQGTTTIASAYFDTLLREDPK-------AGQPEQ---VR 283 Query: 208 DIWTFVRNIPPSNPNWVLISTKLGE 232 ++W FVR W L + + + Sbjct: 284 EVWHFVRRNDTPGDTWRLDAIQQLD 308 >gi|330878142|gb|EGH12291.1| Tim44-like domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 281 Score = 78.4 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 72/232 (31%), Gaps = 39/232 (16%) Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58 +F+ F IL+ I F +F R + ++ + + + Y Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPPYQRETSQPTQ 140 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 G+ +++ F+ + FL+ AR ++++ + Sbjct: 141 NPIF------------------GSSSPASAAPVINAPAWFNEERFLDAARGHFQSLQQHW 182 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 ++ I + V ++ Q R +S+ + ++++ + T+ Sbjct: 183 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTYIENLNVQLDGVDDRADKTIATL 239 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D + + W R + P W++ + Sbjct: 240 TFSGVSKTSRFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 279 >gi|226500730|ref|NP_001147017.1| LOC100280627 [Zea mays] gi|194707278|gb|ACF87723.1| unknown [Zea mays] gi|195606496|gb|ACG25078.1| tim44-like domain containing protein [Zea mays] Length = 303 Score = 78.4 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 9/140 (6%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 + F ++A Y+ + G ++ K++ R++ + L R+S +V L Sbjct: 160 GYTKNQFYDQALKIYKEVNTLMAHGDTSSLRKILTERMHSTIKNELKRRQSMWNSVHWEL 219 Query: 157 VGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 V + + +++ + +T+ V + +Y+ ++S D V Sbjct: 220 VEPAVSIRTLRARMIGLDKNDLDKAFIQLTLEFVTKQKFEAYNSKGAVVSGDKSKEVLVK 279 Query: 208 DIWTFVRNIPPSNPNWVLIS 227 DIW F R++ W + Sbjct: 280 DIWVFERSLFHPGAYWRVCG 299 >gi|302763825|ref|XP_002965334.1| hypothetical protein SELMODRAFT_83588 [Selaginella moellendorffii] gi|300167567|gb|EFJ34172.1| hypothetical protein SELMODRAFT_83588 [Selaginella moellendorffii] Length = 413 Score = 78.4 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 9/160 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 T ++I S F DF+ E + I+ ++ +G + K V V + Sbjct: 247 GETATAAAFKEIRSRDPTFSFPDFVLEVQEDIRPILTAYLKGDYDTLRKKVCKEVVERCR 306 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199 +S V + ++ I ++++ + + N I I Q D+ + Sbjct: 307 AEHRALQSQGLYVDTKILYISELEVRESKLIGNEPVIIISFQTQQNYCVRDEFGHIREGS 366 Query: 200 P---EIFGKVIDIWTFVR------NIPPSNPNWVLISTKL 230 + ++ W + + P W L + Sbjct: 367 KASIDDIRTILYAWAMQQVSLDEMDPDEFTPRWRLREMQQ 406 >gi|326934094|ref|XP_003213130.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like [Meleagris gallopavo] Length = 341 Score = 78.4 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 49/171 (28%), Gaps = 2/171 (1%) Query: 56 ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115 K+ L E +R + +F K F A+ Y Sbjct: 134 PPEGDARMTSLSKEGLKQRMEKLKQTAASQLALRKVKDHDPNFSTKTFPEMAQEIYVEAH 193 Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENT 173 +S + LV R Y D + V+S + + Sbjct: 194 NSLANFNKQKLHSLVTERCYPDMVRGNRYKTIRWSFVESLEPPRVVHVRCTSIVNRGNLY 253 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 +T+R+ + A YD+ L+ ++ V++ F R + W Sbjct: 254 GQVTVRMHSRQTLAIYDRFGRLMYGGEQLPKDVLEYVVFERYLVNPYGTWR 304 >gi|26992029|ref|NP_747454.1| hypothetical protein PP_5353 [Pseudomonas putida KT2440] gi|24987165|gb|AAN70918.1|AE016736_1 conserved hypothetical protein [Pseudomonas putida KT2440] Length = 284 Score = 78.4 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 73/229 (31%), Gaps = 30/229 (13%) Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61 +F+ F I+ F + FL R + ++ + + + + Sbjct: 84 MFMGDGFEGFQIMDFLIVALIAFLVFRFIAARRRQQQPQMAMPGHAPMQREAHAQPAQPS 143 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 + G + +++ F+ + FL ARN ++++ + Sbjct: 144 IFGGSAAPAATAA---------------PVINAPAWFNEQSFLAAARNHFQSLQQHWDAN 188 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 ++ I + V ++ + R +S+ + ++++ + T+ Sbjct: 189 EMDKISEFVTPQMLEFLK---RERAELGDGFQSTYIDNLEVQLDGVDDRADRTDATLTFR 245 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D + + W VR + P W++ + Sbjct: 246 GVSKNSRFD-QGEV----------FSESWHMVRAQGENQP-WLVAGIRQ 282 >gi|46581175|ref|YP_011983.1| hypothetical protein DVU2771 [Desulfovibrio vulgaris str. Hildenborough] gi|46450596|gb|AAS97243.1| conserved hypothetical protein [Desulfovibrio vulgaris str. Hildenborough] Length = 321 Score = 78.4 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 62/226 (27%), Gaps = 32/226 (14%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 G +LL A + + +F + + + G Sbjct: 127 MPGILDMLLLALVAYGIFKFI----------------SMRRQAANPQPAAAGYGAHTSPS 170 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 DN P G + + V FD + F+ A+ ++ + S+ + + I Sbjct: 171 DNDNGWGTLRSAPQGGTTYQE-QAGPEVPAGFDIEQFIKGAKMAFTRLQASWDKRDLEDI 229 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + V + + ++ + + + ++ E T+ Sbjct: 230 SQFSTPAVLDEIRRQ----AEADPVPSTTEILLVNANLLGVVEENGQQTATVFFDVLLRE 285 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + V ++W FVR + W L + + Sbjct: 286 DPR----------QDAPTSVREVWHFVRPVK-GTGMWQLDGIQQVD 320 >gi|218680118|ref|ZP_03528015.1| import inner membrane translocase subunit Tim44 [Rhizobium etli CIAT 894] Length = 78 Score = 78.4 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 44/71 (61%) Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 +I +A + + IT+RI+ Q ISA+YDK ++LI D E +V D+WTF R+ Sbjct: 5 TKAEITHAETKGSEAQITVRIISQLISATYDKADVLIEGDAENVAEVNDLWTFARDTRSR 64 Query: 220 NPNWVLISTKL 230 +PNW L++T+ Sbjct: 65 DPNWKLVATES 75 >gi|313496366|gb|ADR57732.1| Import inner membrane translocase [Pseudomonas putida BIRD-1] Length = 284 Score = 78.0 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 73/229 (31%), Gaps = 30/229 (13%) Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61 +F+ F I+ F + FL R + ++ + + + + Sbjct: 84 MFMGDGFEGFQIMDFLIVALIAFLVFRFIAARRRQQQPQMAMPGHAPMQREAHAQPAQPS 143 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 + G + +++ F+ + FL ARN ++++ + Sbjct: 144 IFGGSAAPAATAA---------------PVINAPAWFNEQSFLAAARNHFQSLQQHWDAN 188 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 ++ I + V ++ + R +S+ + ++++ + T+ Sbjct: 189 EMDKISEFVTPQMLEFLK---RERAELGDGFQSTYIDNLEVQLDGVDDRADRTDATLTFR 245 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D + + W VR + P W++ + Sbjct: 246 GVSKNSRFD-QGEV----------FSESWHMVRAQGENQP-WLVAGIRQ 282 >gi|70733447|ref|YP_263222.1| hypothetical protein PFL_6164 [Pseudomonas fluorescens Pf-5] gi|68347746|gb|AAY95352.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5] Length = 291 Score = 78.0 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 73/228 (32%), Gaps = 35/228 (15%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M F IL+ A I F +F R + ++ ++ ++ + + Sbjct: 97 FQGM--QIFDILIMAVIAFVIF---RFIAARRRKQQEQYAPAGHAPMQREAFEPQQPA-- 149 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 G R +++ F+ + F+ AR+ ++++ + + Sbjct: 150 -------------GGSIFGGSPAPAARPVINAPAWFNEERFIEAARSHFQSLQQHWDANE 196 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + I + V ++ Q R +S+ + +++ + T+ G Sbjct: 197 MDKIAEFVTPQMLQFLKQ---ERADLGDGFQSTYIDNLQVQLEGVDDRADKTIATLTFSG 253 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ +D + + W R + P W++ + Sbjct: 254 VSKTSRFD-QGEV----------FSESWNMERAQGDNQP-WLVAGIRQ 289 >gi|91778033|ref|YP_553241.1| hypothetical protein Bxe_B2096 [Burkholderia xenovorans LB400] gi|91690693|gb|ABE33891.1| Putative membrane protein [Burkholderia xenovorans LB400] Length = 318 Score = 78.0 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 22/229 (9%), Positives = 63/229 (27%), Gaps = 25/229 (10%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 +M S ++ + + + + ++ + + + Sbjct: 114 AQMLSNAL-LIGLVVVAGVMLFRF--IANRRR---PDLAYGHGPANRQQTNGAPFLNQVR 167 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 + + NL T ++ D FL A+ + + ++ + Sbjct: 168 EARPDTNLRDWPRTTMDATGAASSVKA----PELADQAAFLVSAKAMFMRLQGAWDRNEQ 223 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 + +L + F + + V + +++N + +++R Sbjct: 224 GDLFELTTPEM---FARLKQDLEIRGHEPSRTDVTQLEAEVLNTESSADETLVSVRFY-- 278 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + D +I +IW VR + W L + + Sbjct: 279 ---------GQMREDDAQIVQPFQEIWNMVRR-AHGDEGWRLAGIQQID 317 >gi|241661967|ref|YP_002980327.1| import inner membrane translocase subunit Tim44 [Ralstonia pickettii 12D] gi|240863994|gb|ACS61655.1| import inner membrane translocase subunit Tim44 [Ralstonia pickettii 12D] Length = 339 Score = 78.0 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 26/245 (10%), Positives = 67/245 (27%), Gaps = 40/245 (16%) Query: 13 ILLFAFITFFVFLQLRGVLGKKT-------------GNEKPFSGFFSGKYVFSKRDERGI 59 ++L A + F V +R V G + G+ +P+ + + Sbjct: 110 LILIALVAFVVMWIIRKVRGSRPQGPAYATGGPSLGGDREPYVPQPAAPAPQASAPAAAS 169 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNK------------VMRDIVSVYTDFDPKDFLNEA 107 + G + + V DFD + FL A Sbjct: 170 LNTGNTSGLGAGAATAAQSWNLGGSAASAQAVNAQPAAAAPQQPWGVPADFDTQAFLRNA 229 Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167 + + + ++ G ++ I + + F + + + V + +++ Sbjct: 230 KVYFIRLQAAWDAGNLNDIREFTTPEM---FAEIKMDLADRGTSPNKTDVVSVEAEMLGI 286 Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 + ++R ++ ++W + + WVL Sbjct: 287 ETQAAEYLASVRF-----------SGMIREEANAPAQPFAEVWNLTKPTQGAGG-WVLAG 334 Query: 228 TKLGE 232 + + Sbjct: 335 IQQLQ 339 >gi|20197991|gb|AAM15344.1| hypothetical protein [Arabidopsis thaliana] Length = 499 Score = 78.0 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 48/143 (33%), Gaps = 6/143 (4%) Query: 91 IVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEK 150 + + F DF++E + + +++++ +G ++K + + S Sbjct: 347 VHKIQESFSLPDFVSEIQEAIRPVLNAYSKGDAKTLKKYCSKELIERCTAEHRAFTSQGY 406 Query: 151 NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210 L+ + ++ I + T I +R Q I D+D + + V W Sbjct: 407 FFDHKLLHVSEVDIQETKMMGTTPVIIVRFQTQEIFCVRDQDGKIKEGGQDTIHTVYYDW 466 Query: 211 TFVR----NIPPS--NPNWVLIS 227 + + P W L Sbjct: 467 AMQQVDAAELGEDAIYPIWRLRE 489 >gi|297265563|ref|XP_002808078.1| PREDICTED: LOW QUALITY PROTEIN: 39S ribosomal protein L45, mitochondrial-like [Macaca mulatta] Length = 497 Score = 78.0 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 46/139 (33%), Gaps = 2/139 (1%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I +F KDF +A+N + + LV + D + + Sbjct: 313 IRRIKDYDANFKIKDFPEKAKNIFIEAHLCLNNSDHDRLYTLVTEHCFPDMTWDIKYKTV 372 Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 V+S + + +T+ + + A YD+ L+ ++ Sbjct: 373 RXSFVESLEPSHVVQVHCSSIMNQGNVYGQVTVCMHTRQTLAIYDRFGRLMYGQEDVPKD 432 Query: 206 VIDIWTFVRNIPPSNPNWV 224 V++ F + + +W Sbjct: 433 VLEYVVFEKQLTNPYGSWR 451 >gi|229365490|dbj|BAH57996.1| hypothetical protein [Acetobacter lovaniensis] Length = 130 Score = 78.0 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 2/127 (1%) Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163 + + I ++ + + A++++ + FN+ LS S S V Sbjct: 3 YQAFQQTLMDIQTAWNQQNIAAMQQMATPEMVSYFNEQLSALASQGARNVVSDVHFIQGD 62 Query: 164 IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223 + A E + T+ + I + + +I + ++WTF R W Sbjct: 63 LAEAWRENGMDFATVAMRYSLIDLTTNAMGQVIQGSSTEPVNITELWTFTRP--SRGGRW 120 Query: 224 VLISTKL 230 +L + + Sbjct: 121 LLSAIQQ 127 >gi|296136650|ref|YP_003643892.1| import inner membrane translocase subunit Tim44 [Thiomonas intermedia K12] gi|295796772|gb|ADG31562.1| import inner membrane translocase subunit Tim44 [Thiomonas intermedia K12] Length = 304 Score = 78.0 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 62/220 (28%), Gaps = 31/220 (14%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 +I L A F++F LR + S S + + +G G + Sbjct: 114 LMIGLLALAAFWIFNLLR----------RKSSTDKSAQPMQYAGASQGYAQAPLGAETHV 163 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 T S+ DFD FL A+ Y + ++ +++++ Sbjct: 164 PAQWTPGAGSQTASGA------SIPADFDRDGFLASAKQHYIRLQQAWDAADLNSLKTFT 217 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 + +Y L R + + + ++ ++ Sbjct: 218 TAEMYDALAADLQQR---GMTPNKTEIVTLEASLLALEETPTEYVASVEF---------- 264 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 L+ V ++W V+ + W L + Sbjct: 265 -SGLVREETWGGASPVREVWNLVKP-RDGSSGWQLAGIQQ 302 >gi|186526131|ref|NP_001119286.1| P-P-bond-hydrolysis-driven protein transmembrane transporter [Arabidopsis thaliana] gi|332006297|gb|AED93680.1| Mitochondrial inner membrane translocase complex, subunit Tim44-related protein [Arabidopsis thaliana] Length = 296 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 9/154 (5%) Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 L T + F EA Y+ I G+ I K V R+Y + + Sbjct: 139 ELRSAYAIAKLRKTGYSKNTFYIEALELYKQINIQMANGEKKTIRKNVTERMYSALKNEI 198 Query: 143 STRKSNEKNVKSSLVGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 R++ V +V + I +++ + +T+ + + +YD Sbjct: 199 KQREAMWDGVYWEMVEPVVKIRTLQARLIGIDRTDLKKAFIQLTLEFLTKQKFEAYDAKG 258 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 + + D V DIW F +++ + W L Sbjct: 259 NVAAGDKNKEVLVRDIWVFEKSLFHTGAYWRLCG 292 >gi|148256773|ref|YP_001241358.1| hypothetical protein BBta_5490 [Bradyrhizobium sp. BTAi1] gi|146408946|gb|ABQ37452.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 325 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 31/225 (13%), Positives = 64/225 (28%), Gaps = 24/225 (10%) Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 + ++L + F+ R + +P + G+ LG G Sbjct: 123 ASILGLILQIVLVVFLV---RMAMAWWQRRNQPAYAAGPSPADGQQSFRSGLSGLGSGLG 179 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 P D + F I ++ V + Sbjct: 180 GFGGFGGGSNQPPL------------QIQPADYEAF----ERLLGEIQQAWSNEDVGRLR 223 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 L + F L ++ K S V + + A E Y T+ + Sbjct: 224 LLSTPEMASYFERDLEQNQARGVVNKVSGVKLLQGDLAEAWRENGADYATVAMRFTLADK 283 Query: 188 SYDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + ++ ++ + +V +IWTF+R+ +W L + + Sbjct: 284 TTERASGRVVEGS-DQPQEVTEIWTFLRH---PGADWQLSAIQQV 324 >gi|297808779|ref|XP_002872273.1| protein translocase [Arabidopsis lyrata subsp. lyrata] gi|297318110|gb|EFH48532.1| protein translocase [Arabidopsis lyrata subsp. lyrata] Length = 314 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 53/154 (34%), Gaps = 9/154 (5%) Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 L T + F EA Y+ I G I K V R+Y + + Sbjct: 157 ELRSAYAIAKLRKTGYSKNTFYIEALELYKQINILMANGDKKTIRKNVTERMYSALKNEI 216 Query: 143 STRKSNEKNVKSSLVGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 R++ V ++ + I +++ + +T+ + + +YD Sbjct: 217 KQREAMWDGVYWEMIEPVVKIRTLQARLIGIDRTDLKKAFIQLTLEFLTKQKFEAYDAKG 276 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 +++ D V DIW F +++ + W L Sbjct: 277 NVVAGDRNKEVLVRDIWVFEKSLFHTGAYWRLCG 310 >gi|296160985|ref|ZP_06843796.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. Ch1-1] gi|295888684|gb|EFG68491.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. Ch1-1] Length = 330 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 23/212 (10%), Positives = 59/212 (27%), Gaps = 23/212 (10%) Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFP 79 ++ R +G+K +P S + G+ + + Sbjct: 139 GVWLI---RRFMGRKRDTAQPAYAGGSP-----SLNSGGMGYSQEPRYSAPPTGSYLEPQ 190 Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 + +V FD + FL A+ + + ++ G I + + F Sbjct: 191 GNPLSTPTINAAPAVPAGFDSEAFLRNAKVYFVRLQAAWDVGNTEDIREFTTPEM---FA 247 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199 + S + V + +++ N + ++R L+ + Sbjct: 248 EVKVDLSSRGAETNQTDVVQLNAELLGVEERANEYFASVRF-----------SGLIREAP 296 Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 +++W + W+L + Sbjct: 297 GAAAEPFVEVWNLSKANRAGEG-WLLAGIQQV 327 >gi|120601588|ref|YP_965988.1| import inner membrane translocase, subunit Tim44 [Desulfovibrio vulgaris DP4] gi|120561817|gb|ABM27561.1| import inner membrane translocase, subunit Tim44 [Desulfovibrio vulgaris DP4] gi|311234849|gb|ADP87703.1| import inner membrane translocase subunit Tim44 [Desulfovibrio vulgaris RCH1] Length = 311 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 62/226 (27%), Gaps = 32/226 (14%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 G +LL A + + +F + + + G Sbjct: 117 MPGILDMLLLALVAYGIFKFI----------------SMRRQAANPQPAAAGYGAHTSPS 160 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 DN P G + + V FD + F+ A+ ++ + S+ + + I Sbjct: 161 DNDNGWGTLRSAPQGGTTYQE-QAGPEVPAGFDIEQFIKGAKMAFTRLQASWDKRDLEDI 219 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + V + + ++ + + + ++ E T+ Sbjct: 220 SQFSTPAVLDEIRRQ----AEADPVPSTTEILLVNANLLGVVEENGQQTATVFFDVLLRE 275 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + V ++W FVR + W L + + Sbjct: 276 DPR----------QDAPTSVREVWHFVRPVK-GTGMWQLDGIQQVD 310 >gi|302191653|ref|NP_001180514.1| 39S ribosomal protein L45, mitochondrial [Gallus gallus] Length = 296 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 49/171 (28%), Gaps = 2/171 (1%) Query: 56 ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115 K+ L E +R + +F K F A+ Y Sbjct: 89 PPEGDARVTSLSKEGLKQRMEKLKQTAASQLALRKVKDHDPNFSTKTFPEVAQEIYVEAH 148 Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENT 173 +S + LV R Y D + V+S + + Sbjct: 149 NSLANFNKQKLHSLVTERCYPDMVRGNRYKTIRWSFVESLEPPRVVHVRCTSVVNQGNLY 208 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 +T+R+ + A YD+ L+ ++ V++ F R + W Sbjct: 209 GQVTVRMHTRQTLAIYDRFGRLMYGGEKLPKDVLEYVVFERYLVNPYGTWR 259 >gi|329906020|ref|ZP_08274321.1| putative membrane protein [Oxalobacteraceae bacterium IMCC9480] gi|327547352|gb|EGF32182.1| putative membrane protein [Oxalobacteraceae bacterium IMCC9480] Length = 209 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 21/225 (9%), Positives = 63/225 (28%), Gaps = 19/225 (8%) Query: 7 DSGDFLILLF-AFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 + LL + F R K KP +G Sbjct: 1 MASMISTLLMVGLLAAAAFFIYRMFKRKTDDGSKPGYAGGYDAGSTDSSSRNYTPEIGSR 60 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + + + P+ + + + + D FL ++ + + ++ + ++ Sbjct: 61 IEPVAQPAALQSVPLTSGAAAAPFGVPADF---DVPGFLRNSKTYFIRLQAAWDKADIND 117 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 I + S ++ + + R + ++ V D +++ +++ Sbjct: 118 IREFTSSEMFAELRLQIQER---GASPNNTDVVKLDAELLGVETVGGDYLASVKF----- 169 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ S+ + W ++ W+L + Sbjct: 170 ------SGMIKESESAPAEPFAEAWNLSKS-TSGQGGWILAGIQQ 207 >gi|91781796|ref|YP_557002.1| hypothetical protein Bxe_A4049 [Burkholderia xenovorans LB400] gi|91685750|gb|ABE28950.1| Conserved hypothetical protein [Burkholderia xenovorans LB400] Length = 330 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 23/210 (10%), Positives = 59/210 (28%), Gaps = 23/210 (10%) Query: 22 FVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIG 81 ++ R +G+K +P S + G+ + + Sbjct: 141 WLI---RRFMGRKRDTSQPAYAGGSP-----SLNSSGMGYSQEPRYTAPPTGSYLEPQGN 192 Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 + +V FD + FL A+ + + ++ G I + + F + Sbjct: 193 PLSTPAINTAPAVPAGFDSEAFLRNAKVYFVRLQAAWDVGNTEDIREFTTPEM---FAEV 249 Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201 S + V + +++ N + ++R L+ + Sbjct: 250 KVDLSSRGAETNQTDVVQLNAELLGVEERANEYFASVRF-----------SGLIREAPGA 298 Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 +++W + W+L + Sbjct: 299 AAEPFVEVWNLSKANRAGEG-WLLAGIQQV 327 >gi|308807262|ref|XP_003080942.1| Putative mitochondrial/chloroplast ribosomal protein L45 (ISS) [Ostreococcus tauri] gi|116059403|emb|CAL55110.1| Putative mitochondrial/chloroplast ribosomal protein L45 (ISS) [Ostreococcus tauri] Length = 285 Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 55/211 (26%), Gaps = 16/211 (7%) Query: 32 GKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDI 91 G ++G + ++ R I + + + + Sbjct: 56 GARSGIRLNRTSSNVIAEPYAGPLRRPTIVQALTTSL-GWRYVVDSALGKAKDAYALSKC 114 Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGK-----VHAIEKLVDSRVYQDFNDSLSTRK 146 F F EA+ Y I + H ++ D R+ Sbjct: 115 TKEIKGFTLDGFKAEAKQLYRMINATSASTSGTRALSHETRHATTDKMQSDLKRERKARE 174 Query: 147 SNEKNVKSSLVGIDDMKII----------NASIEENTVYITIRIVGQFISASYDKDNLLI 196 + + + N + V +T R + A+YD L+ Sbjct: 175 LGGWGAIDWSLEDIEECQVVRGRLIMANPNDTSGAGFVQLTTRFRSRQRFAAYDGKGRLV 234 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 S DP+ V D W F + N W L Sbjct: 235 SGDPDEVLDVEDFWVFEHGLKIPNSRWRLAG 265 >gi|330812676|ref|YP_004357138.1| hypothetical protein PSEBR_a5598 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380784|gb|AEA72134.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 291 Score = 77.3 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 69/229 (30%), Gaps = 30/229 (13%) Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61 +F+ I + FL R + ++ ++ F+ Sbjct: 91 MFMGDGFQGMQIFDILIMAVIAFLVFRFIAARRRKQQEQFAPAGHA-------------- 136 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 ++ N + G+ R +++ F+ + F+ AR+ + ++ + Sbjct: 137 -PMQREVFNQQPASGSIFGGSAAPVAARPVINAPAWFNEQRFIEAARSHFMSLQQHWDAN 195 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 ++ I + V ++ + R +S+ + +++ + T+ Sbjct: 196 EMDKIAEFVTPQLLEFLK---RERAELGDGFQSTYIDNLHVQLDGVDDRADKTIATLTFS 252 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G + +DK + W R P W++ + Sbjct: 253 GVSKDSRFDKG-----------EAFSESWNMERAQGDDQP-WLVAGIRQ 289 >gi|188996487|ref|YP_001930738.1| import inner membrane translocase subunit Tim44 [Sulfurihydrogenibium sp. YO3AOP1] gi|188931554|gb|ACD66184.1| import inner membrane translocase subunit Tim44 [Sulfurihydrogenibium sp. YO3AOP1] Length = 295 Score = 77.3 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 74/219 (33%), Gaps = 9/219 (4%) Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73 LL A +F L LG + +G + + K ++ + + Sbjct: 84 LLGALAGMVIFSALSHFLG-----LQFAAGVLGILGLLLLAGLIFFVIRLFRKGEEPVGA 138 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 N + + + LN +N + I ++ G + ++ + R Sbjct: 139 FNTNLNYQPYQYDDSQTQAGSLPYINEELILNLTKNIFYDIQKAWSNGDLSPVKNFLTDR 198 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 +YQ + L K+ I++++I++ E + + +R+ I + D + Sbjct: 199 MYQYLEEQLKDLKAKGLRNIVENPKIENLEIVHVEEEGDNKVVIVRLDASAIDYTVDSNG 258 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ++ +D + W FV NW L K + Sbjct: 259 NIVEADKYNPVSFTEYWAFV----GKALNWKLDDIKQVD 293 >gi|92118080|ref|YP_577809.1| import inner membrane translocase, subunit Tim44 [Nitrobacter hamburgensis X14] gi|91800974|gb|ABE63349.1| import inner membrane translocase, subunit Tim44 [Nitrobacter hamburgensis X14] Length = 312 Score = 77.3 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 48/152 (31%), Gaps = 9/152 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 G T D + F I ++ V+ + L + F Sbjct: 168 SGFGFASASNAPPLEITPSDYEAF----ERLLGEIQTAWSNEDVNTLHTLATPEMVSYFT 223 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK-DNLLISS 198 + L + K S V + + A E T Y T+ + I + ++ ++ Sbjct: 224 EDLRANDARGVVNKVSDVKLLQGDLAEAWREGTTDYATVALRYSLIDKTTERASGRVVEG 283 Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + +V D+WTF R W L + + Sbjct: 284 S-DQPQEVTDVWTFAR---LGGGKWELSAIQQ 311 >gi|300705184|ref|YP_003746787.1| hypothetical protein RCFBP_21025 [Ralstonia solanacearum CFBP2957] gi|299072848|emb|CBJ44204.1| conserved membrane protein of unknown function [Ralstonia solanacearum CFBP2957] Length = 348 Score = 77.3 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 26/246 (10%), Positives = 64/246 (26%), Gaps = 41/246 (16%) Query: 13 ILLFAFITFFVFLQLRGVLGKKT-------------GNEKPFSGFFSGKYVFSKRDERGI 59 ++L A + F V +R + G + G+ +P+ + Sbjct: 118 LILIAIVAFVVMWIIRKLRGTRAQGPAYATGGPSLGGDREPYVPSPAAPAAQPAAPVAAS 177 Query: 60 ITLGKGKKKDNLD-------------SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNE 106 + G L V + V DFD + FL Sbjct: 178 TSTGSAGNASGLGAGAQTAAQAWSLGGPAAPVADAPAAAPVAQQPWGVPADFDTQAFLRN 237 Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN 166 A+ + + ++ ++ I + + F + + V + +++ Sbjct: 238 AKVYFIRLQAAWDTANLNDIREFTTPEM---FAEIKMDLADRGTAPNKTDVVSVEAELLG 294 Query: 167 ASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 ++R ++ ++W + + WVL Sbjct: 295 IETHPTEYLASVRF-----------SGMIREDANAPAQPFAEVWNLTKP-TQGSGGWVLA 342 Query: 227 STKLGE 232 + + Sbjct: 343 GIQQLQ 348 >gi|218200130|gb|EEC82557.1| hypothetical protein OsI_27102 [Oryza sativa Indica Group] gi|222637566|gb|EEE67698.1| hypothetical protein OsJ_25363 [Oryza sativa Japonica Group] Length = 321 Score = 77.3 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 56/140 (40%), Gaps = 9/140 (6%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 + K+F ++A Y+ + G ++ K++ R++ + L R+S +V L Sbjct: 178 GYTKKEFYDQAFKIYKEVNTLMAHGDTSSLRKILTERMHSTIKNELKKRQSMWSSVHWEL 237 Query: 157 VGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 V + + +++ + +T+ V + +Y+ ++S D V Sbjct: 238 VEPAVCIRTLRARMIGLDKNDLDKAFIQLTLEFVTKQKFEAYNTKGEVVSGDKSKEVLVK 297 Query: 208 DIWTFVRNIPPSNPNWVLIS 227 DIW F R++ W + Sbjct: 298 DIWVFERSLFHPGAYWRVCG 317 >gi|148235359|ref|NP_001079503.1| 39S ribosomal protein L45, mitochondrial precursor [Xenopus laevis] gi|29611839|sp|P59480|RM45_XENLA RecName: Full=39S ribosomal protein L45, mitochondrial; Short=L45mt; Short=MRP-L45; Flags: Precursor gi|27696384|gb|AAH43883.1| Mrlp45 protein [Xenopus laevis] Length = 309 Score = 77.3 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 49/160 (30%), Gaps = 3/160 (1%) Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 K+ L + +R + ++F K F +A+ + H + Sbjct: 101 SKEGLKQRTQQLKQTAASQLAIRKVKEYDSEFTTKTFPEKAQEIFITAHKYLTNFDRHKL 160 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQF 184 LV R Y + R V+S + S +T+R+ + Sbjct: 161 HTLVTERCYPEMVRGNRYRTIRWSFVESIEAPRVVQVRCPEMVSKGNLYAQVTVRMHNKQ 220 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 YD+ ++ E V++ F R++ W Sbjct: 221 TLIVYDRFGRVMCGSEE-PRDVLEYVVFERHMVNPYGTWR 259 >gi|332374642|gb|AEE62462.1| unknown [Dendroctonus ponderosae] Length = 325 Score = 77.3 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 25/195 (12%), Positives = 59/195 (30%), Gaps = 9/195 (4%) Query: 40 PFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIG-------TRLNKVMRDIV 92 P + ++ S + + + +R +R I Sbjct: 84 PPRPWMEHQHFISSSGDIFEPYVPPEGDGKVSPISAQGAKQNLVFLEKKSRTMLAVRKIR 143 Query: 93 SVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNV 152 DFD +F A + Y + + + + R Y + ++ + K + Sbjct: 144 QYDEDFDGPEFCKSATDIYIKMHECMAANDKETLINYITERAYPEVVHNIDNKTLRWKYL 203 Query: 153 KSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210 K + + + + +T+R Q A YD+ L+ + V++ Sbjct: 204 KDIELPRIVHARNTEVITPDNVFAQVTVRFHTQQTLAIYDRFGRLMHGSEILAKDVLEYV 263 Query: 211 TFVRNIPPSNPNWVL 225 F +++ W + Sbjct: 264 VFEKHLSNQYGLWRV 278 >gi|187927437|ref|YP_001897924.1| import inner membrane translocase subunit Tim44 [Ralstonia pickettii 12J] gi|309779861|ref|ZP_07674616.1| Tim44 domain protein [Ralstonia sp. 5_7_47FAA] gi|187724327|gb|ACD25492.1| import inner membrane translocase subunit Tim44 [Ralstonia pickettii 12J] gi|308921438|gb|EFP67080.1| Tim44 domain protein [Ralstonia sp. 5_7_47FAA] Length = 339 Score = 77.3 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 26/245 (10%), Positives = 67/245 (27%), Gaps = 40/245 (16%) Query: 13 ILLFAFITFFVFLQLRGVLGKKT-------------GNEKPFSGFFSGKYVFSKRDERGI 59 ++L A + F V +R V G + G+ +P+ + + Sbjct: 110 LILIALVAFVVMWIIRKVRGSRPQGPAYATGGPSLGGDREPYVPQPAAPAPQASAPAAAS 169 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNK------------VMRDIVSVYTDFDPKDFLNEA 107 + G + + V DFD + FL A Sbjct: 170 LNTGNTSGLGAGAATAAQSWNLGGSAASAQAVNAQPAAAAPQQPWGVPADFDTQAFLRNA 229 Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167 + + + ++ G ++ I + + F + + + V + +++ Sbjct: 230 KVYFIRLQAAWDAGNLNDIREFTTPEM---FAEIKMDLADRGTSPNKTDVVSVEAEMLGI 286 Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 + ++R ++ ++W + + WVL Sbjct: 287 ETQAAEYLASVRF-----------SGMIREEANAPAQPFAEVWNLTKPTQGAGG-WVLAG 334 Query: 228 TKLGE 232 + + Sbjct: 335 IQQLQ 339 >gi|145334561|ref|NP_001078626.1| P-P-bond-hydrolysis-driven protein transmembrane transporter [Arabidopsis thaliana] gi|26451284|dbj|BAC42743.1| unknown protein [Arabidopsis thaliana] gi|332006296|gb|AED93679.1| Mitochondrial inner membrane translocase complex, subunit Tim44-related protein [Arabidopsis thaliana] Length = 313 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 9/154 (5%) Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 L T + F EA Y+ I G+ I K V R+Y + + Sbjct: 156 ELRSAYAIAKLRKTGYSKNTFYIEALELYKQINIQMANGEKKTIRKNVTERMYSALKNEI 215 Query: 143 STRKSNEKNVKSSLVGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 R++ V +V + I +++ + +T+ + + +YD Sbjct: 216 KQREAMWDGVYWEMVEPVVKIRTLQARLIGIDRTDLKKAFIQLTLEFLTKQKFEAYDAKG 275 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 + + D V DIW F +++ + W L Sbjct: 276 NVAAGDKNKEVLVRDIWVFEKSLFHTGAYWRLCG 309 >gi|121608297|ref|YP_996104.1| import inner membrane translocase subunit Tim44 [Verminephrobacter eiseniae EF01-2] gi|121552937|gb|ABM57086.1| import inner membrane translocase, subunit Tim44 [Verminephrobacter eiseniae EF01-2] Length = 321 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 19/235 (8%), Positives = 69/235 (29%), Gaps = 26/235 (11%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGN--------EKPFSGFFSGKYVFSKRDERGII 60 +I L A + + V+ R VL + G + + + + Sbjct: 102 QFLMIALLAMLAYAVY---RMVLRARQGGAGGSGLALQGAGASSPQAAQAPVQYSPHNVG 158 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMR--DIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + + G + + V FD FL A+ ++ + ++ Sbjct: 159 NDASARPWEGSGMAGRQPAAGVVIGSGLAGAQNWGVPEGFDTDGFLAAAKRNFVTLQAAW 218 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRK-SNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 + + ++ + + L+ R+ + + + + + +++ + + + Sbjct: 219 DRSDISTLRSMMTDDMLGEIRAQLAEREAQHGAQSQQTEAVMIEARLLGIEDQADCYMAS 278 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + ++ ++W ++ + W++ + + Sbjct: 279 VEF-----------SGMIREEPSAGASPFREVWNMTKS-KAGSTGWLVAGVQALQ 321 >gi|298498003|ref|ZP_07007810.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|297542336|gb|EFH78386.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 272 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 13/183 (7%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +R L K G+ + + E+ + + Sbjct: 92 GIQFMDILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQP 151 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + G + FD F+N AR Y + ++ ++ I Sbjct: 152 QS---------MGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 202 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + V +++D + + + + + V D +I+ A + N ++++ G++++ Sbjct: 203 REYVSPSLFEDLKAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYVT 258 Query: 187 ASY 189 S Sbjct: 259 LSK 261 >gi|242051094|ref|XP_002463291.1| hypothetical protein SORBIDRAFT_02g041340 [Sorghum bicolor] gi|241926668|gb|EER99812.1| hypothetical protein SORBIDRAFT_02g041340 [Sorghum bicolor] Length = 158 Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 56/140 (40%), Gaps = 9/140 (6%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 + K F ++A Y+ + G ++ K++ R++ + L R+S +V L Sbjct: 15 GYTKKQFYDQALKIYKEVNTLMAHGDTSSLRKILTERMHSTIKNELKRRQSMWNSVHWEL 74 Query: 157 VGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 V + + ++++ + +T+ V + +Y+ ++S D V Sbjct: 75 VEPAVSIRTLRARMIGLDKNDLDKSFIQLTLEFVTKQKFEAYNSKGAVVSGDKSKEVLVK 134 Query: 208 DIWTFVRNIPPSNPNWVLIS 227 DIW F R++ W + Sbjct: 135 DIWVFERSLFHPGAYWRVCG 154 >gi|86750877|ref|YP_487373.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris HaA2] gi|86573905|gb|ABD08462.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris HaA2] Length = 338 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 65/194 (33%), Gaps = 11/194 (5%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97 ++ + + Y + + T+G G + F G + + Sbjct: 153 QRRNNPQPAPAYANTNANNNAGPTVGPGPEPAPAYRTGFGFGSGGGSASNLPPLEIKPE- 211 Query: 98 FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157 D + F I ++ + +L + F L+ K+ K S V Sbjct: 212 -DYEAF----EQLLGDIQSAWTNEDTEKLNQLTTPEMASYFAKDLAENKAANDINKVSDV 266 Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRNI 216 + + A E T Y T+ + + + ++ + L++ E +V ++WTF R Sbjct: 267 KLLQGDLAEAWREGETDYATVAMRFSLVDKTLERGTDRLVAGS-ETPIEVTEVWTFARR- 324 Query: 217 PPSNPNWVLISTKL 230 +W L + + Sbjct: 325 --PGAHWELSAIQQ 336 >gi|83746614|ref|ZP_00943664.1| Hypothetical protein RRSL_03792 [Ralstonia solanacearum UW551] gi|83726748|gb|EAP73876.1| Hypothetical protein RRSL_03792 [Ralstonia solanacearum UW551] Length = 348 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 24/248 (9%), Positives = 64/248 (25%), Gaps = 45/248 (18%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 ++L A + F V +R + G + ++P + + + Sbjct: 118 LILIAIVAFVVMWIIRKLRGTRP--QEPAYATGGPSLGGDREPYVPSPAAPAAQPAAPVA 175 Query: 73 SINELFPIGTRLN----------------------------KVMRDIVSVYTDFDPKDFL 104 + G +V + V DFD + FL Sbjct: 176 ASTGTGSAGNASGLGAGAQTAAQAWSLGGPAAPVADAPAAAQVAQQPWGVPADFDTQAFL 235 Query: 105 NEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164 A+ + + ++ ++ I + + F + + V + ++ Sbjct: 236 RNAKVYFIRLQAAWDTANLNDIREFTTPEM---FAEIKMDLADRGTAPNKTDVVSVEAEL 292 Query: 165 INASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 + ++R ++ ++W + + WV Sbjct: 293 LGIETHPTEYLASVRF-----------SGMIREDANAPAQPFAEVWNLTKP-TQGSGGWV 340 Query: 225 LISTKLGE 232 L + + Sbjct: 341 LAGIQQLQ 348 >gi|41053493|ref|NP_956601.1| 39S ribosomal protein L45, mitochondrial [Danio rerio] gi|29476850|gb|AAH50166.1| Mitochondrial ribosomal protein L45 [Danio rerio] Length = 251 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 53/180 (29%), Gaps = 2/180 (1%) Query: 48 KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107 + R R D P + +R I + F K+F Sbjct: 23 RQQTLNRRPRASRRKKPELPVWWSDKSTWRDPSTSHAQLAIRKIKDYDSTFTSKEFPGIG 82 Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKII 165 + + + E + LV R Y + + + ++S + Sbjct: 83 QQIFIDAHAALTEFNKEKLHSLVTERCYPEMVRGNRYKTLRWRFIESLEPPRLVQARCPD 142 Query: 166 NASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 S +T+R+ + A YD+ L+ D E V++ R++ W L Sbjct: 143 MISKGNLYGQVTVRMHSRQTLAIYDRFGRLMLGDEEEPRDVLEYLVMERHLVNPYGRWRL 202 >gi|330976327|gb|EGH76384.1| import inner membrane translocase, subunit Tim44 [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 281 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 71/232 (30%), Gaps = 39/232 (16%) Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58 +F+ F IL+ I F +F R + ++ + + + Y Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGASPYQRETSQPAQ 140 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 G+ +++ F+ + FL+ AR ++++ + Sbjct: 141 NPIF------------------GSSSPASTAPVINAPAWFNEQRFLDAARGHFQSLQQHW 182 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 ++ I + V ++ Q R +S+ + +++ + T+ Sbjct: 183 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTYIENLQVQLDGVDDRADKTIATL 239 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D + + W R + P W++ + Sbjct: 240 TFSGVSKTSRFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 279 >gi|321469612|gb|EFX80592.1| hypothetical protein DAPPUDRAFT_303989 [Daphnia pulex] Length = 327 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 3/199 (1%) Query: 29 GVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVM 88 G+L ++ E+P + + G L EL ++ + Sbjct: 81 GMLPPRSWMERPVFVSATSSVFEAYVPPEGDGKL-SALTLGGAKQSMELLSKKSKSMMAV 139 Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148 R I S DF K F EA+ Y + E + + V Y D L + Sbjct: 140 RKIKSFEEDFSTKYFPEEAQEIYLKAHKALAEKDDDTLHQCVTELCYPLMTDDLRSCTVR 199 Query: 149 EKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 + +KS + + E +T+R Q A YD+ LI + + V Sbjct: 200 WQFLKSLEPPRVVHARCTEVINKENIFSQVTVRFNTQQTLAVYDRFGRLIYGNEVVAKDV 259 Query: 207 IDIWTFVRNIPPSNPNWVL 225 ++ F +++ W + Sbjct: 260 LEYVVFEKHLANVYGLWRI 278 >gi|319945468|ref|ZP_08019728.1| Tim44 domain protein [Lautropia mirabilis ATCC 51599] gi|319741254|gb|EFV93681.1| Tim44 domain protein [Lautropia mirabilis ATCC 51599] Length = 318 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 64/231 (27%), Gaps = 24/231 (10%) Query: 10 DFLILLFAFITFFVFLQLRGVL---------GKKTGNEKPFSGFFSGKYVFSKRDERGII 60 L++L A + F F L G F+ + D Sbjct: 102 FLLMILLAGLAIFAFRMFGKRLQQQQQAQAAGSGAPFAGNLRDAFNNSGKQGQNDMFRQN 161 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 + G + P + V FD + F+ +A+ + + +F Sbjct: 162 SNAGGLFSQTPAAGAAQAPAADSTVSGYTAAMQVPGGFDTEAFVRQAKVQFVRLQAAFDA 221 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + + ++ + N + R +++ V + ++ E + ++ Sbjct: 222 RNADDLREFTSPEMFGELNIDMMQR---GSAPQTTEVVELNAELTGMHQEGPILVASVLF 278 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 L+ +IW F R ++ WVL + Sbjct: 279 -----------SGLIREEPNSPAEPFSEIWNFTRPASGASG-WVLAGIQQP 317 >gi|207742308|ref|YP_002258700.1| hypothetical protein RSIPO_00492 [Ralstonia solanacearum IPO1609] gi|206593696|emb|CAQ60623.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609] Length = 351 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 24/248 (9%), Positives = 64/248 (25%), Gaps = 45/248 (18%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 ++L A + F V +R + G + ++P + + + Sbjct: 121 LILIAIVAFVVMWIIRKLRGTRP--QEPAYATGGPSLGGDREPYVPSPAAPAAQPAAPVA 178 Query: 73 SINELFPIGTRLN----------------------------KVMRDIVSVYTDFDPKDFL 104 + G +V + V DFD + FL Sbjct: 179 ASTGTGSAGNASGLGAGAQTAAQAWSLGGPAAPVADAPAAAQVAQQPWGVPADFDTQAFL 238 Query: 105 NEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164 A+ + + ++ ++ I + + F + + V + ++ Sbjct: 239 RNAKVYFIRLQAAWDTANLNDIREFTTPEM---FAEIKMDLADRGTAPNKTDVVSVEAEL 295 Query: 165 INASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 + ++R ++ ++W + + WV Sbjct: 296 LGIETHPTEYLASVRF-----------SGMIREDANAPAQPFAEVWNLTKP-TQGSGGWV 343 Query: 225 LISTKLGE 232 L + + Sbjct: 344 LAGIQQLQ 351 >gi|33603441|ref|NP_891001.1| hypothetical protein BB4467 [Bordetella bronchiseptica RB50] gi|33577565|emb|CAE34830.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 340 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 68/233 (29%), Gaps = 24/233 (10%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F + + LI L F F+ +LRG G + G G + Sbjct: 120 FAEFMASMLLIALVVFAVIFIVRRLRG--GAPRQAMQSAYGAAGGNRPGQPSQQPMWRES 177 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRD-----IVSVYTDFDPKDFLNEARNSYEAIVDS 117 + + + DFD FL +A++ + I Sbjct: 178 LNPAPAQQPAAAPVAAAAPAAAAAALPKAGDDGNWFIPGDFDTPRFLQQAKDQFVRIQGI 237 Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 + G+V ++ + + + L R + V + + +++ + + Sbjct: 238 WDSGEVESLRDFLTDDLISELKPQLEAR---GAAANKTEVVLLNAELLGIETVSDGHLAS 294 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +R +L + + ++W + ++ W+L + Sbjct: 295 VRF-----------SGMLREAPGTEAFRFEEVWNLFKP---ADGGWLLAGIQQ 333 >gi|294340780|emb|CAZ89175.1| conserved hypothetical protein; putative membrane protein [Thiomonas sp. 3As] Length = 304 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 61/220 (27%), Gaps = 31/220 (14%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 +I L A F++F LR + S S + + +G G + Sbjct: 114 LMIGLLALAAFWIFNLLR----------RKSSTDKSAQPMQYAGASQGYAQAPLGVETHM 163 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 T + DFD FL A+ Y + ++ +++++ Sbjct: 164 PAQWTPGAGSQTASGAGI------PADFDRDGFLASAKQHYIRLQQAWDAADLNSLKTFA 217 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 + +Y L R + + + ++ ++ Sbjct: 218 TAEMYDALAADLQQR---GMTPNKTEIVTLEASLLALEETPTEYVASVEF---------- 264 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 L+ V ++W V+ + W L + Sbjct: 265 -SGLVREETWGGASPVREVWNLVKP-RDGSSGWQLAGIQQ 302 >gi|207727902|ref|YP_002256296.1| hypothetical protein RSMK04298 [Ralstonia solanacearum MolK2] gi|206591144|emb|CAQ56756.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] Length = 351 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 24/248 (9%), Positives = 63/248 (25%), Gaps = 45/248 (18%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 ++L A + F V +R + G + ++P + + + Sbjct: 121 LILIAIVAFVVMWVIRKLRGTRP--QEPAYATGGPSLGGDREPYVPSPAAPAAQPAAPVA 178 Query: 73 SINELFPIGTRLN----------------------------KVMRDIVSVYTDFDPKDFL 104 + G V + V DFD + FL Sbjct: 179 ASTGTGSAGNASGLGAGAQTAAQAWSLGGPAAPVADAPAAAPVAQQPWGVPADFDTQAFL 238 Query: 105 NEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164 A+ + + ++ ++ I + + F + + V + ++ Sbjct: 239 RNAKVYFIRLQAAWDTANLNDIREFTTPEM---FAEIKMDLADRGTAPNKTDVVSVEAEL 295 Query: 165 INASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 + ++R ++ ++W + + WV Sbjct: 296 LGIETHPTEYLASVRF-----------SGMIREDANAPAQPFAEVWNLTKP-TQGSGGWV 343 Query: 225 LISTKLGE 232 L + + Sbjct: 344 LAGIQQLQ 351 >gi|187922657|ref|YP_001894299.1| import inner membrane translocase subunit Tim44 [Burkholderia phytofirmans PsJN] gi|187713851|gb|ACD15075.1| import inner membrane translocase subunit Tim44 [Burkholderia phytofirmans PsJN] Length = 330 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 22/210 (10%), Positives = 57/210 (27%), Gaps = 23/210 (10%) Query: 22 FVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIG 81 ++ R +G+K + +P + G + + Sbjct: 141 WLI---RRFMGRKRDSAQPAYA-----GSSPSLNSGGTGYSQEPRYSAPPTGSYLEQQGN 192 Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 + V FD + FL A+ + + ++ G I + + F + Sbjct: 193 PLNTPTINAAPVVPAGFDSEAFLRNAKVYFVRLQAAWDVGNTEDIREFTTPEM---FAEV 249 Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201 S + V + +++ N + ++R L+ + Sbjct: 250 KVDLSSRGAETNQTDVVQLNAELLGVEERANEYFASVRF-----------SGLIREAPGA 298 Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 +++W + W+L + Sbjct: 299 AAEPFVEVWNLSK-ANRPGEGWLLAGIQQV 327 >gi|148550461|ref|YP_001270563.1| import inner membrane translocase subunit Tim44 [Pseudomonas putida F1] gi|148514519|gb|ABQ81379.1| import inner membrane translocase, subunit Tim44 [Pseudomonas putida F1] Length = 297 Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 71/229 (31%), Gaps = 30/229 (13%) Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61 +F+ F I+ F + FL R + ++ + + + + Sbjct: 97 MFMGDGFEGFQIMDFLIVALIAFLVFRFIAARRRQQQPQMAMPGHAPMQREAHAQPAQPS 156 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 + G + + F+ + FL ARN ++++ + Sbjct: 157 IFGGSAAPAAAAAPVINAPA---------------WFNEQSFLAAARNHFQSLQQHWDAN 201 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 ++ I + V ++ + R +S+ + ++++ + T+ Sbjct: 202 EMDKISEFVTPQMLEFLK---RERAELGDGFQSTYIDNLEVQLDGVEDRADRTDATLTFR 258 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D + + W VR + P W++ + Sbjct: 259 GVSKNSRFD-QGEV----------FSESWHMVRAQGENQP-WLVAGIRQ 295 >gi|237749468|ref|ZP_04579948.1| hypothetical protein OFBG_01949 [Oxalobacter formigenes OXCC13] gi|229380830|gb|EEO30921.1| hypothetical protein OFBG_01949 [Oxalobacter formigenes OXCC13] Length = 305 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 72/228 (31%), Gaps = 26/228 (11%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M S L+ A I F + +R G+ + ++ T Sbjct: 102 FAGMISTV---LMLALIFFAIRFLMRRFTGR-----GKPQDQTAYASQYNDNGYNQSSTP 153 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 G + + N+ G+ + D + DFD FL A++ Y + ++ + Sbjct: 154 EIGSGLPHQYAGNQTVNTGSGMQ---NDNWGIPVDFDVPAFLRAAKSYYIRMQAAWDKAD 210 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 +H I + ++ + L R + V D +++ N +++ Sbjct: 211 IHDIHEFTTPEMFAEMKLQLQER---GPGPNITDVVSLDAELLGIETLNNEYMASVKF-- 265 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ S+ ++W R I WVL + Sbjct: 266 ---------SGMIRESEGAPAEPFAEVWNMTRPI-SKEGGWVLAGIQQ 303 >gi|91086739|ref|XP_971533.1| PREDICTED: similar to GA19976-PA [Tribolium castaneum] gi|270009728|gb|EFA06176.1| hypothetical protein TcasGA2_TC009023 [Tribolium castaneum] Length = 319 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 68/199 (34%), Gaps = 3/199 (1%) Query: 29 GVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVM 88 G+L + EKPF +G G + + + + ++ + Sbjct: 74 GILPPRPWVEKPFFISSTGGIFEPYVPPEGDGKISPIHMQGAKQKL-QFLEKKSKTMMAI 132 Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148 R I DFD F EA N Y + + + I V R Y + ++ + + Sbjct: 133 RKIRMFEEDFDTTAFCKEAENIYVKMHELMAKKDWDNITDYVTERAYPEVIHNVENKTIH 192 Query: 149 EK-NVKSSLVGIDDMKIINA-SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 K L + + + + E T+R Q + A YD+ L+ I V Sbjct: 193 WKLIKNIELPRVVHARCTDVITKENVFGQTTVRFHTQQMLAVYDRFGRLMHGSEIIAKDV 252 Query: 207 IDIWTFVRNIPPSNPNWVL 225 ++ F +++ W + Sbjct: 253 LEYIVFEKHLANVYGKWRI 271 >gi|171464177|ref|YP_001798290.1| import inner membrane translocase subunit Tim44 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193715|gb|ACB44676.1| import inner membrane translocase subunit Tim44 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 303 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 24/225 (10%), Positives = 59/225 (26%), Gaps = 26/225 (11%) Query: 7 DSGDFLILLFAFITFFVF-LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 S LL A + FV +R +L + + + +G Sbjct: 102 SSSLITGLLIAMLAGFVIMFVIRKLLPSLSSAGQGPNLSSNGMQRTGIDQAPRQEPAFTP 161 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 E P + L FD + FL + + + ++ +G + + Sbjct: 162 AANAFGGVSAEPEPFQSTL----------PPGFDKQTFLENVKQYFVTLQKAWDQGDLAS 211 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + + + F + V + +++ + + +++ Sbjct: 212 LREFTTPEM---FATIQQDLAGRTDGSNQTDVVTINAQLLGIETADGHYFCSVQF----- 263 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ +IW + + WVL Sbjct: 264 ------SGMIRELQGAPASDFSEIWNLSKPVEGLGG-WVLAGISQ 301 >gi|332525837|ref|ZP_08401978.1| import inner membrane translocase subunit Tim44 [Rubrivivax benzoatilyticus JA2] gi|332109388|gb|EGJ10311.1| import inner membrane translocase subunit Tim44 [Rubrivivax benzoatilyticus JA2] Length = 321 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 21/226 (9%), Positives = 65/226 (28%), Gaps = 18/226 (7%) Query: 8 SGDFLILLFAFITFFVF-LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 + I L A + FFV LR + ++ Sbjct: 110 ANFLTIALLAVVAFFVIRFLLRRFGPRPAAAPAAAGVGALRTGPADWTPPPAPVSPTPVT 169 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + + P+ + + + D + F A+ + + + + + Sbjct: 170 PVPSAAPVAADAPVAAERTLAPAFVPAAF---DSESFERVAKTIFVRLQAANDSADLDDL 226 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + + F + + + +++ V + K+++ + E+ +++R V Sbjct: 227 RRFTTPEM---FAELKMDLQDRGSSTQTTDVVEVEAKVVDVAEEDGRQIVSVRYV----- 278 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + ++W V+ + + W + + + Sbjct: 279 ------GRVREEAGAEPVAFDEVWHLVKPVGDDSRGWAIAGIEQMD 318 >gi|170724288|ref|YP_001751976.1| import inner membrane translocase subunit Tim44 [Pseudomonas putida W619] gi|169762291|gb|ACA75607.1| import inner membrane translocase subunit Tim44 [Pseudomonas putida W619] Length = 284 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 73/229 (31%), Gaps = 30/229 (13%) Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61 +F+ I+ F + FL R + ++ + + + + + Sbjct: 84 MFMGDGFEGLQIMDFLIVALIAFLVFRFIAARRRQQQPQMAAPGHAPFQREAHGQPAQPS 143 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 + G + + F+ + FL AR+ ++++ + Sbjct: 144 IFGGSAAPAAPAAPVINAPA---------------WFNEQSFLAAARSHFQSLQQHWDAN 188 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 ++ I + V ++ + R +++ + D+++ + T+ Sbjct: 189 EMDKIAEFVTPQMLEFLK---RERADLGDGFQATYIDNLDVQLDGVDDRADRTDATLTFR 245 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D+ +P + W VR + P W++ + Sbjct: 246 GVSKTSRFDQ------GEP-----FSESWHMVRAPGENQP-WLVAGIRQ 282 >gi|195054150|ref|XP_001993989.1| GH22480 [Drosophila grimshawi] gi|193895859|gb|EDV94725.1| GH22480 [Drosophila grimshawi] Length = 353 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 69/200 (34%), Gaps = 3/200 (1%) Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87 RGV + E+PF +G +F E ++ Sbjct: 79 RGVFPPRPWMERPFHISCTG-GIFEPYVPPEGDGKKSIITTSGAKQKFEFLEKKSKSMLA 137 Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I S F +F + A++ Y + + + I + V R Y + ++ + Sbjct: 138 VRKIRSYEESFSSDEFGSYAQDIYISAHTHMAAKEKYKIREFVTERCYPEMMHNVKDKTI 197 Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 + + ++S + + E IT+R Q + A YD+ L+ + Sbjct: 198 HWRFLQSLEPPRLVHARCTEVITKENQFAQITVRFHTQQMLAIYDRFGRLMHGSEILTKD 257 Query: 206 VIDIWTFVRNIPPSNPNWVL 225 V++ F ++I W L Sbjct: 258 VLEYVVFEKHISNEYGQWRL 277 >gi|255641370|gb|ACU20962.1| unknown [Glycine max] Length = 181 Score = 76.1 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 9/153 (5%) Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 L T + F NEA N Y+ I +G + K V ++ + + Sbjct: 18 LKSAYAIAKLRKTGYSKNQFYNEAANMYKEINTLIAKGDKRTLRKAVTENMFSALKNEIK 77 Query: 144 TRKSNEKNVKSSLVGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDNL 194 R++ V +V + + + + + +T+ I+ + +YD Sbjct: 78 QRETAWSRVYWEMVEPVVKIRTLRARLIGVDRKDLNKTFIQLTLEILAKQKFEAYDSKGS 137 Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 +++ D V DIW F +++ + W L Sbjct: 138 VVAGDKSKEVLVRDIWVFEKSMFHAGATWRLCG 170 >gi|221068939|ref|ZP_03545044.1| import inner membrane translocase subunit Tim44 [Comamonas testosteroni KF-1] gi|220713962|gb|EED69330.1| import inner membrane translocase subunit Tim44 [Comamonas testosteroni KF-1] Length = 332 Score = 76.1 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 22/245 (8%), Positives = 71/245 (28%), Gaps = 29/245 (11%) Query: 5 KMDSGDFLILLFAFITFFVFLQLRGVLGKK----------TGNEKPFSGFFSGKYVFSKR 54 M +L+F + + + + ++ ++ + +G G + Sbjct: 100 GMGEAFANMLMFGLLAMVIMVVVGMIMRRRKPAPAMQSNHSPFAFQGAGNLGGDANAPQA 159 Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVM------RDIVSVYTDFDPKDFLNEAR 108 + +G + + ++ V TDFD + FL A+ Sbjct: 160 RQYNPEKVGNDASARPWEQNHIPEAAAAAGGSMIGSALSGSQNWGVPTDFDAEGFLTAAK 219 Query: 109 NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK-SNEKNVKSSLVGIDDMKIINA 167 ++ + ++ + + ++ + + LS R+ + V + D +++ Sbjct: 220 RNFVTLQSAWDRSDITTLRSMMTDEMLSEIRSQLSERESQRAGEPNHTDVLMIDAQLLGI 279 Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 N ++ ++ ++W + W++ Sbjct: 280 EDLGNGYMASVEF-----------SGMIREEASAGPSPFREVWNMTKP-KSGASGWLVAG 327 Query: 228 TKLGE 232 + + Sbjct: 328 VQALQ 332 >gi|218459911|ref|ZP_03500002.1| putative translocase transmembrane protein [Rhizobium etli Kim 5] Length = 59 Score = 76.1 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 27/56 (48%), Positives = 37/56 (66%) Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 IT+RIV Q ISA+YDK + LI D E +V D+WTF R+ +PNW L++T+ Sbjct: 1 QITVRIVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATES 56 >gi|325273940|ref|ZP_08140103.1| hypothetical protein G1E_12467 [Pseudomonas sp. TJI-51] gi|324100911|gb|EGB98594.1| hypothetical protein G1E_12467 [Pseudomonas sp. TJI-51] Length = 282 Score = 76.1 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 70/229 (30%), Gaps = 32/229 (13%) Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61 +F+ F I+ F + FL R + ++ + + + + Sbjct: 84 MFMGDGFEGFQIMDFLIVALIAFLVFRFIAARRRQQQPQMAMPGHAPMQREAHGQPAQPS 143 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 + G + F+ + FL ARN ++++ + Sbjct: 144 VFGGSAAPAAAPVINAPA-----------------WFNEQSFLAAARNHFQSLQQHWDAN 186 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 ++ I + V ++ + R +S+ + ++++ + T+ Sbjct: 187 EMDKIAEFVTPQMLEFLK---RERAELGDGFQSTYIDNLEVQLDGVDDRPDRTDATLTFR 243 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ D+ + W VR + + P W++ + Sbjct: 244 GVSKNSRLDQG-----------ELFSESWHMVRALGENQP-WLVAGIRQ 280 >gi|264676930|ref|YP_003276836.1| import inner membrane translocase, subunit [Comamonas testosteroni CNB-2] gi|262207442|gb|ACY31540.1| import inner membrane translocase, subunit [Comamonas testosteroni CNB-2] Length = 333 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 21/245 (8%), Positives = 70/245 (28%), Gaps = 29/245 (11%) Query: 5 KMDSGDFLILLFAFITFFVFLQLRGVLGKK----------TGNEKPFSGFFSGKYVFSKR 54 M +L+F + + + + ++ ++ + +G G + Sbjct: 101 GMGEAFANMLMFGLLAMVIMVVVGMIMRRRKAAPAVQSTSSPFAFQGAGNLGGDVNAPQA 160 Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVM------RDIVSVYTDFDPKDFLNEAR 108 + +G + + ++ V DFD + FL A+ Sbjct: 161 RQYNPEKVGNDASARPWEQNHIPEAAAAAGGSMIGSALSGSQNWGVPADFDAEGFLTAAK 220 Query: 109 NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK-SNEKNVKSSLVGIDDMKIINA 167 ++ + ++ + + ++ + + LS R+ + V + D +++ Sbjct: 221 RNFVTLQSAWDRSDITTLRSMMTDEMLAEIRSQLSERESQRAGEPNHTDVLMIDAQLLGI 280 Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 N ++ ++ ++W + W++ Sbjct: 281 EDLGNGYMASVEF-----------SGMIREEASAGPSPFREVWNMTKP-KSGTSGWLVAG 328 Query: 228 TKLGE 232 + + Sbjct: 329 VQALQ 333 >gi|226952069|ref|ZP_03822533.1| membrane protein [Acinetobacter sp. ATCC 27244] gi|294651122|ref|ZP_06728458.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] gi|226837187|gb|EEH69570.1| membrane protein [Acinetobacter sp. ATCC 27244] gi|292823016|gb|EFF81883.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] Length = 338 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 25/195 (12%), Positives = 51/195 (26%), Gaps = 16/195 (8%) Query: 37 NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT 96 N FS S D I G + M + Sbjct: 160 NSNQFSRQSSQPTARQTGDNTNIFGQAVGGGAATQSPFGNAPTQAPFGSATMSSGNQLPD 219 Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 +P FL AR + I + I + + +Y + ++ + Sbjct: 220 GTEPAAFLRVARQRFNHIQSMNTASNIQEIRRYLTPDLYASMYQDIM----ANQDQDVAE 275 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 + I + E +++R + + +IW FV+++ Sbjct: 276 FSNLNAMIAETATENGQYVVSVRF-----------TGTVSEDLNSLPQPFTEIWHFVKDV 324 Query: 217 PPSNPNWVLISTKLG 231 +WV+ + Sbjct: 325 GSQQ-DWVVAGIQQA 338 >gi|227822467|ref|YP_002826439.1| hypothetical protein NGR_c19220 [Sinorhizobium fredii NGR234] gi|227341468|gb|ACP25686.1| hypothetical protein NGR_c19220 [Sinorhizobium fredii NGR234] Length = 330 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 4/130 (3%) Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163 L+ + + ++ A+ +L + L + V + Sbjct: 203 LDRFETMLKELQAAYAAEDYAALRRLTTPEAMSYLAEELGEDATKGLKNDVREVHLVQGD 262 Query: 164 IINASIEENTVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222 + A E T Y T+ + + I D+ ++S D E + +++WTF R + Sbjct: 263 VAEAWNESGTDYATVAMRYESIDVMRDRATGRIVSGDAERPTEAVELWTFARK---RGGD 319 Query: 223 WVLISTKLGE 232 W + + + E Sbjct: 320 WQVSAIQAVE 329 >gi|209735096|gb|ACI68417.1| 39S ribosomal protein L45, mitochondrial precursor [Salmo salar] gi|303659089|gb|ADM15945.1| 39S ribosomal protein L45, mitochondrial precursor [Salmo salar] Length = 317 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 57/194 (29%), Gaps = 2/194 (1%) Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93 + + VF K++L E +R I Sbjct: 75 RQEYMERAINIACTAGVFDPYITPEGDARLSSLSKESLKRRTEQIKQDAASQLAIRKIKE 134 Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153 ++F K F +A+ + ++ + + LV R Y + + V+ Sbjct: 135 HESEFTTKAFPVKAQEIFVDAHNALTQFNKEKLHSLVTERCYPEMVRRNRYKTLRWHFVE 194 Query: 154 SSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWT 211 S + S + +T+R+ + A Y + L+ E V++ Sbjct: 195 SLEPPKVVHARCPDMVSKGDMYGQVTVRMHSRQTLAVYGRFGRLMMGSEEEPRDVLEYLV 254 Query: 212 FVRNIPPSNPNWVL 225 R++ W L Sbjct: 255 LERHLVNHYGMWRL 268 >gi|239817097|ref|YP_002946007.1| import inner membrane translocase subunit Tim44 [Variovorax paradoxus S110] gi|239803674|gb|ACS20741.1| import inner membrane translocase subunit Tim44 [Variovorax paradoxus S110] Length = 337 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 21/250 (8%), Positives = 65/250 (26%), Gaps = 36/250 (14%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVL-GKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 + L++ + ++ +G +P F G + + Sbjct: 100 GFANILLIGLLVMAGLFVWRMFKARSAASSGANRPGGFAFEGAGNPANASAPAQYSPANV 159 Query: 66 KKKDNLDSINELFPIGTRLNKV----------------------MRDIVSVYTDFDPKDF 103 + + + FD F Sbjct: 160 GNDASARPWERNTAAFDAGSSAHGSSLSAAGAAAGGSMIGSALSGSQSWGIPAGFDVDGF 219 Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN-EKNVKSSLVGIDDM 162 L+ A+ ++ + D++ V + ++ + ++ L+ R S+ + V + D Sbjct: 220 LSAAKRNFVTLQDAWDRADVSMLRSMMTDDMVEEIRSQLADRASHTGGASNKTEVVMLDA 279 Query: 163 KIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222 K++ + ++ ++ G ++W + Sbjct: 280 KLLGIEELADAYLASVEF-----------SGMIREDASAGPGPFREVWNMTKP-TSGTSG 327 Query: 223 WVLISTKLGE 232 W++ + + Sbjct: 328 WLVAGVQALQ 337 >gi|261856484|ref|YP_003263767.1| import inner membrane translocase subunit Tim44 [Halothiobacillus neapolitanus c2] gi|261836953|gb|ACX96720.1| import inner membrane translocase subunit Tim44 [Halothiobacillus neapolitanus c2] Length = 295 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 23/225 (10%), Positives = 63/225 (28%), Gaps = 37/225 (16%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 MD +I LFA F + LR + Sbjct: 102 MDF--IIIALFALGAFMLIRALR--------------------KSSQSAASPYARSTAGT 139 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 + + + + F+ FL A+ + + ++ + Sbjct: 140 MADQAPQPSSIGSFSNSSAGSAQAPLPNAPAWFNEDSFLQGAKAHFTNLQRAWDANDLKT 199 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 +++ + F + R + V + ++++ S E +++ ++ G Sbjct: 200 MQEYFTPEL---FLELARERARIGDENNVTEVQSLNAQLLDLSREGDSIVASVLFQG--- 253 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ D + +IW + +W+++ + Sbjct: 254 ---------MVREDYGQPEPIAEIWHVRHTADSAQGDWLIVGIQQ 289 >gi|91976179|ref|YP_568838.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisB5] gi|91682635|gb|ABE38937.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas palustris BisB5] Length = 331 Score = 75.7 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 55/190 (28%), Gaps = 14/190 (7%) Query: 42 SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPK 101 + + + G + + D + Sbjct: 153 QRRKNPQPAPAYASNAGPTVGPGPEPSYRTGFGFGGGGGSAPNAPPLEIKPE-----DYE 207 Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDD 161 F + ++ V + +L + F L+ K+ K S V + Sbjct: 208 AF----ERLLGDVQSAWSNEDVEKLNQLTTPEMASYFAKDLAENKAANDINKVSDVKLLQ 263 Query: 162 MKIINASIEENTVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSN 220 + + E T Y T+ + + + ++ N L+S E +V ++WTF R Sbjct: 264 GDLAESWREGETDYATVAMRFSLVDKTLERGTNRLVSGS-ETPIEVTEVWTFARRSGAD- 321 Query: 221 PNWVLISTKL 230 W L + + Sbjct: 322 --WELSAIQQ 329 >gi|71909645|ref|YP_287232.1| import inner membrane translocase, subunit Tim44 [Dechloromonas aromatica RCB] gi|71849266|gb|AAZ48762.1| Mitochondrial import inner membrane translocase, subunit Tim44 [Dechloromonas aromatica RCB] Length = 288 Score = 75.7 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 64/229 (27%), Gaps = 38/229 (16%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 + +L A I G+F K + + Sbjct: 95 NFMMMALLAVAVIGVI--------------------GYFMRKKAAASQQGGMQYAGANAN 134 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIV---SVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 +N + P G + ++ FD + F+ A+ ++ + S G + Sbjct: 135 YGNNAPHQPDFIPAGGSAAAPLASATTGGNIPAGFDVEGFVRNAKVNFIRLQASNDAGNL 194 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 I + + F + + + V + ++I+ + E + +++R Sbjct: 195 DDIREFTSPEM---FAEIKMEMAERGNAKQETDVVQLNAEVIDVAEEPSRYIVSVRF--- 248 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 L+ +IW + ++ W L + + Sbjct: 249 --------TGLIREEKDAAAAPFDEIWHMTKP-TDNSRGWTLAGIQQVQ 288 >gi|299769068|ref|YP_003731094.1| hypothetical protein AOLE_04120 [Acinetobacter sp. DR1] gi|298699156|gb|ADI89721.1| hypothetical protein AOLE_04120 [Acinetobacter sp. DR1] Length = 330 Score = 75.7 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 22/202 (10%), Positives = 54/202 (26%), Gaps = 18/202 (8%) Query: 32 GKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDI 91 KK P++ G+ F + G + Sbjct: 145 KKKLAANNPYAPNNDGQNPFGRSAAPQATPRNAGDNTNIFGQSVGGGAATQAPFGGATTS 204 Query: 92 V--SVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNE 149 + +P FL AR + I + I + + +Y + + + Sbjct: 205 NGNQLPDGSEPAAFLRIARQRFNHIQSMNTASNIEEIRRYLTPELYSSMYNDIMENQDQ- 263 Query: 150 KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDI 209 + + +++++ E +++R + + +I Sbjct: 264 ---DVAEFSNLNAMVVDSATENGQYVVSVRF-----------TGTVSEDLNSLPQPFTEI 309 Query: 210 WTFVRNIPPSNPNWVLISTKLG 231 W FV+ +WV+ + Sbjct: 310 WHFVKPAGSQQ-DWVVAGIQQA 330 >gi|299531492|ref|ZP_07044898.1| import inner membrane translocase, subunit [Comamonas testosteroni S44] gi|298720455|gb|EFI61406.1| import inner membrane translocase, subunit [Comamonas testosteroni S44] Length = 325 Score = 75.7 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 21/245 (8%), Positives = 70/245 (28%), Gaps = 29/245 (11%) Query: 5 KMDSGDFLILLFAFITFFVFLQLRGVLGKK----------TGNEKPFSGFFSGKYVFSKR 54 M +L+F + + + + ++ ++ + +G G + Sbjct: 93 GMGEAFANMLMFGLLAMVIMVVVGMIMRRRKAAPAVQSTSSPFAFQGAGNLGGDVNAPQA 152 Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVM------RDIVSVYTDFDPKDFLNEAR 108 + +G + + ++ V DFD + FL A+ Sbjct: 153 RQYNPEKVGNDASARPWEQNHIPEAAAAAGGSMIGSALSGSQNWGVPADFDAEGFLTAAK 212 Query: 109 NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK-SNEKNVKSSLVGIDDMKIINA 167 ++ + ++ + + ++ + + LS R+ + V + D +++ Sbjct: 213 RNFVTLQSAWDRSDITTLRSMMTDEMLAEIRSQLSERESQRAGEPNHTDVLMIDAQLLGI 272 Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 N ++ ++ ++W + W++ Sbjct: 273 EDLGNGYMASVEF-----------SGMIREEASAGPSPFREVWNMTKP-KSGTSGWLVAG 320 Query: 228 TKLGE 232 + + Sbjct: 321 VQALQ 325 >gi|330970256|gb|EGH70322.1| import inner membrane translocase, subunit Tim44 [Pseudomonas syringae pv. aceris str. M302273PT] Length = 281 Score = 75.7 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 72/232 (31%), Gaps = 39/232 (16%) Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58 +F+ F IL+ I F +F R + ++ + + + Y Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPPYQRETSQPAQ 140 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 G+ +++ F+ + FL+ AR ++++ + + Sbjct: 141 NPIF------------------GSSSPASSAPVINAPAWFNEQRFLDAARGHFQSLQEHW 182 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 ++ I + V ++ Q R +S+ + +++ + T+ Sbjct: 183 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTFIENLQVQLDGVDDRADKTIATL 239 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D + + W R + P W++ + Sbjct: 240 TFSGVSKTSRFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 279 >gi|312963949|ref|ZP_07778420.1| import inner membrane translocase, subunit Tim44 [Pseudomonas fluorescens WH6] gi|311281984|gb|EFQ60594.1| import inner membrane translocase, subunit Tim44 [Pseudomonas fluorescens WH6] Length = 289 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 76/228 (33%), Gaps = 36/228 (15%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M F IL+ A I F VF R + ++ ++ + + + + + ++ Sbjct: 96 FQGM--QIFDILIMAVIAFLVF---RFIAARRRKQQEHLAPAGAPMQREAFEQKPAMGSI 150 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 G + R +++ F+ + F+ AR+ ++++ + + Sbjct: 151 FGG----------------SAAPAAARPVINAPAWFNEERFVEAARSHFQSLQQHWDANE 194 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + I + V ++ + R +S+ + +++ + T+ G Sbjct: 195 MDKISEFVTPQLLEFLK---RERADLGDGFQSTYIDDLRVQLDGVDDRADKTIATLTFSG 251 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ +D+ + W R P W++ + Sbjct: 252 VSKTSRFDQG-----------EAFSESWNMERAQGDDQP-WLVAGIRQ 287 >gi|260898311|ref|ZP_05906807.1| import inner membrane translocase, subunit Tim44 [Vibrio parahaemolyticus Peru-466] gi|260901532|ref|ZP_05909927.1| import inner membrane translocase, subunit Tim44 [Vibrio parahaemolyticus AQ4037] gi|308088422|gb|EFO38117.1| import inner membrane translocase, subunit Tim44 [Vibrio parahaemolyticus Peru-466] gi|308110872|gb|EFO48412.1| import inner membrane translocase, subunit Tim44 [Vibrio parahaemolyticus AQ4037] Length = 237 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 51/152 (33%), Gaps = 8/152 (5%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +RG+LG K G+ + SK ++ + + Sbjct: 90 GIQFMDILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNASKFEQPNMQNFEQQP 149 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + T + FD F+N +R Y + ++ ++ I Sbjct: 150 NTN--------AGGFTGFGAQTDVPHNYPPGFDQAAFINGSREHYRILQGAWNHNQLDTI 201 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG 158 E+ V +++D + + + + Sbjct: 202 EEYVSPSLFEDLKAERAKLEGEQHTDVMYVDA 233 >gi|229593438|ref|YP_002875557.1| hypothetical protein PFLU6076 [Pseudomonas fluorescens SBW25] gi|229365304|emb|CAY53654.1| putative exported protein [Pseudomonas fluorescens SBW25] Length = 289 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 76/228 (33%), Gaps = 36/228 (15%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F M F IL+ A I F VF R + ++ ++ + + + + ++ Sbjct: 96 FQGM--QIFDILIMAVIAFLVF---RFIAARRRKQQEHLAPAGAPMQREVFEQKPAMGSI 150 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 G + R +++ F+ + F+ AR+ ++++ + + Sbjct: 151 FGG----------------SAAPAAARPVINAPAWFNEERFVEAARSHFQSLQQHWDANE 194 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + I + V ++ + R +S+ + +++ + T+ G Sbjct: 195 MDKISEFVTPQLLEFLK---RERADLGDAFQSTYIDDLRVQLEGVDDRADKTIATLTFSG 251 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ +D + + W R + P W++ + Sbjct: 252 VSKTSRFD-QGEV----------FSESWNMERAQGDNQP-WLVAGIRQ 287 >gi|319795430|ref|YP_004157070.1| import inner membrane translocase subunit tim44 [Variovorax paradoxus EPS] gi|315597893|gb|ADU38959.1| import inner membrane translocase subunit Tim44 [Variovorax paradoxus EPS] Length = 341 Score = 75.4 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 24/247 (9%), Positives = 69/247 (27%), Gaps = 37/247 (14%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNE-----KPFSGFFSGKYVFSKRDERGIITLGKG 65 +L+FA + + + R T + + S ++ + Sbjct: 107 IGLLIFAALAVWRIFKARSAASNGTNGQGGFAFQGAGASPSNASAPAQYSPNNVGNDASA 166 Query: 66 KKKDNLDSINELFPIGTR-------------------LNKVMRDIVSVYTDFDPKDFLNE 106 + + + + P + T FD FL Sbjct: 167 RPWERSATAFDATPADGDRHGSSLSAAGAAAGGSMIGSALGGSQSWGIPTGFDVDGFLGA 226 Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN-EKNVKSSLVGIDDMKII 165 A+ ++ + D++ V + ++ + ++ L+ R S+ + V + D K++ Sbjct: 227 AKRNFVTLQDAWDRADVSMLRSMMTDEMVEEIRTQLADRASHTGGASNKTEVVMLDAKLL 286 Query: 166 NASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 + ++ ++ G ++W + W++ Sbjct: 287 GIEELPDAYMASVEF-----------SGMIREDASAGPGPFREVWNMTKP-TSGGGGWLV 334 Query: 226 ISTKLGE 232 + + Sbjct: 335 AGVQALQ 341 >gi|291237324|ref|XP_002738585.1| PREDICTED: mitochondrial ribosomal protein L45-like [Saccoglossus kowalevskii] Length = 318 Score = 75.4 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 48/140 (34%), Gaps = 7/140 (5%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 +R I +F+ KDF +A++ + + I+ + +++D + Sbjct: 138 LRKIRKFDPEFNTKDFAKQAQHIFI-----KAHSALQDIKNFLLMNIHEDMVWGFKYKTV 192 Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 V+S + S T+R + A YD+ ++ Sbjct: 193 RWNWVESIEKPRVVHIRCTDMISKGNTYAQATVRFHSKQTLAIYDRFGRIMQGSETSPKD 252 Query: 206 VIDIWTFVRNIPPSNPNWVL 225 V++ F +++ +W + Sbjct: 253 VLEYVVFEKHLMDKYGSWRI 272 >gi|237801765|ref|ZP_04590226.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806703|ref|ZP_04593407.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024624|gb|EGI04680.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027817|gb|EGI07872.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 280 Score = 75.4 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 73/232 (31%), Gaps = 40/232 (17%) Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58 +F+ F IL+ I F +F R + ++ + + + + + + Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAPAGAPYQRETSQPTQN 140 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 I G+ ++ F+ + FL AR ++++ + Sbjct: 141 PI-------------------FGSSSPASAPPAINAPAWFNEERFLEAARGHFQSLQQHW 181 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 ++ I + V ++ Q R +S+ + ++++ + T+ Sbjct: 182 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTYIENLNVQLDGVDDRADKTIATL 238 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D + + W R + N W++ + Sbjct: 239 TFSGVSKTSRFD-QGEV----------FSESWNMER-LQGDNQPWLVAGIRQ 278 >gi|167036388|ref|YP_001671619.1| import inner membrane translocase subunit Tim44 [Pseudomonas putida GB-1] gi|166862876|gb|ABZ01284.1| import inner membrane translocase subunit Tim44 [Pseudomonas putida GB-1] Length = 284 Score = 75.4 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 72/229 (31%), Gaps = 30/229 (13%) Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61 +F+ F I+ F + FL R + ++ + + + + Sbjct: 84 MFMGDGFEGFQIMDFLIVALIAFLVFRFIAARRRQQQPQMAMPGHAPMQREAHAQPAQPS 143 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 + G + + F+ ++FL ARN ++++ + Sbjct: 144 IFGGSAAPAAAAAPVINAPA---------------WFNEQNFLAAARNHFQSLQQHWDAN 188 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 ++ I + V ++ + R +++ + ++++ + T+ Sbjct: 189 EMDKIAEFVTPQMLEFLK---RERAELGDGFQATYIDNLEVQLDGLDDRTDRTDATLTFR 245 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D + + W VR + P W++ + Sbjct: 246 GVSKNSRFD-QGEV----------FSESWHMVRAQGENQP-WLVAGIRQ 282 >gi|56753329|gb|AAW24868.1| SJCHGC06217 protein [Schistosoma japonicum] Length = 326 Score = 75.4 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 64/209 (30%), Gaps = 11/209 (5%) Query: 27 LRGVLGKKTG------NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPI 80 LR L ++ G +F L + + Sbjct: 62 LRRRL-RRNGMLPPLLFYDRPINIGHTGQIFDPYVPPDGDGQTSLLSPKRLTHLKDELVD 120 Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE--KLVDSRVYQDF 138 + K + I S F K F +EA N Y + + + +LV + D Sbjct: 121 KGKNYKDLLLIRSHEPSFKSKPFASEAENIYIEAHNLLQNYRQNESRLFELVTEKALVDM 180 Query: 139 NDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196 L R K V + + S + +T+R Q I + Y++ L+ Sbjct: 181 TADLRLRTLRWKFVGNIEPPKVVHIRCKEYLSKGNHYAQVTVRFYTQQILSIYNRFGRLL 240 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 +P+ V++ F ++I W L Sbjct: 241 YGNPDTAVDVLEYVVFEKHISDEYGTWRL 269 >gi|300309983|ref|YP_003774075.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gi|300072768|gb|ADJ62167.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 242 Score = 75.0 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 63/226 (27%), Gaps = 17/226 (7%) Query: 8 SGDFLILL-FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 + +L A I + +R +K+ +P + + K Sbjct: 29 ASMISTILTVALIALAIMFVVRMFR-RKSEASQPAPAWAGAAPQAADNASATPQIGSMLK 87 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + + + G N V FD F+ A+ + + ++ + ++ I Sbjct: 88 TDQSAAAATQGGFGGGFGNAEQAPAYGVPAGFDTVGFVRNAKTYFIRLQAAWDKADINDI 147 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 + ++ + + R + V D +++ N +++ Sbjct: 148 REFTTPEMFAELRLQIQER---GAASNQTDVVSLDAEVLGVETVGNDYLASVKF------ 198 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + + +IW + WVL + + Sbjct: 199 -----FGFIKEDPTASPAQFAEIWNLSKPAAGQGG-WVLAGIQQID 238 >gi|262278111|ref|ZP_06055896.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262258462|gb|EEY77195.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 329 Score = 75.0 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 24/207 (11%), Positives = 61/207 (29%), Gaps = 24/207 (11%) Query: 33 KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDI- 91 +K G +K +G ++ G + ++ D+ N T Sbjct: 139 RKLGAKKKLAGNNPYAPNNGGQNPFGRSAAPQATPRNAGDNTNIFGQSVTGGAATQAPFG 198 Query: 92 -------VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST 144 + +P FL AR + I + I + + +Y + + Sbjct: 199 GVTTSNGNQLPDGSEPAAFLRIARQRFNHIQSMNTASNIEEIRRYLTPELYTSMYNDIME 258 Query: 145 RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFG 204 + + + +++++ E +++R + + Sbjct: 259 NQDQ----DVAEFSNLNAMVVDSANENGQYVVSVRF-----------TGNVSEDLNSLPQ 303 Query: 205 KVIDIWTFVRNIPPSNPNWVLISTKLG 231 +IW FV++ +WV+ + Sbjct: 304 PFTEIWHFVKSAGSQQ-DWVVAGIQQA 329 >gi|73853856|ref|NP_001027509.1| 39S ribosomal protein L45, mitochondrial precursor [Xenopus (Silurana) tropicalis] gi|82249321|sp|Q4QQQ4|RM45_XENTR RecName: Full=39S ribosomal protein L45, mitochondrial; Short=L45mt; Short=MRP-L45; Flags: Precursor gi|67867480|gb|AAH98093.1| hypothetical protein mgc108142 [Xenopus (Silurana) tropicalis] Length = 309 Score = 75.0 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 51/160 (31%), Gaps = 3/160 (1%) Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 K+ L + +R + ++F K F +A+ + A + H + Sbjct: 101 SKEGLKQRTQQLKQTAASQLAIRKVKEYDSEFTTKTFPEKAQELFIAAHQCLTKFDRHEL 160 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQF 184 LV R Y + R V+S + S +T+R+ + Sbjct: 161 HTLVTERCYPEMVRGNRYRTIQWSFVESIEAPRVVQVRCPEMVSKGNLYAQVTVRMHNKQ 220 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 YD+ ++ E V++ F R++ W Sbjct: 221 SLTIYDRFGRVMCGSEE-PRDVLEYVVFERHMVNPYGTWR 259 >gi|17545178|ref|NP_518580.1| hypothetical protein RSc0459 [Ralstonia solanacearum GMI1000] gi|17427469|emb|CAD13987.1| hypothetical transmembrane protein [Ralstonia solanacearum GMI1000] Length = 356 Score = 74.6 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 24/255 (9%), Positives = 62/255 (24%), Gaps = 45/255 (17%) Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 S LI + AF+ ++ +LRG ++ + + Sbjct: 117 SNLILIAIIAFVVMWIIRKLRGSRPQEPAYATGGPSLSGDREPYVPAPAAPAAQPAAPAA 176 Query: 68 KDNLDSINELFPIGTRLNKVM------------------------------RDIVSVYTD 97 + + + V D Sbjct: 177 QPAAPVAASTGTGSAGNTSGLGAGAQTAAQAWSLGGPAAPAANAPAAAPAAQQPWGVPAD 236 Query: 98 FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157 FD + FL A+ + + ++ G ++ I + + F + + V Sbjct: 237 FDTQAFLRNAKVYFVRLQAAWDAGNLNDIREFTTPEM---FAEIKMDLTDRGTVPNKTDV 293 Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217 + +++ ++R ++ ++W + Sbjct: 294 VSVEAELLGIETHPTEYLASVRF-----------SGMIREETSAPAQPFAEVWNLTKP-T 341 Query: 218 PSNPNWVLISTKLGE 232 + WVL + + Sbjct: 342 QGSGGWVLAGIQQLQ 356 >gi|240138844|ref|YP_002963319.1| hypothetical protein MexAM1_META1p2250 [Methylobacterium extorquens AM1] gi|240008816|gb|ACS40042.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 324 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 66/220 (30%), Gaps = 20/220 (9%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 I I F V + +R ++ G + R + G Sbjct: 123 IFQIGLIAFLVMMAVRFFRRRQEG---------QPAMAGNAPHARSGLPPQGGMNSGVNP 173 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 L G + D + F S + I ++ V A+ +L Sbjct: 174 MGGGLGAGGLGGARPQPVQPVQVQPDDFQAF----ERSLQEIQSAYGREDVAALRRLATP 229 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK- 191 + F + L + + S V + + A E + T+ + +++ Sbjct: 230 EMVSYFEEDLRANAARGVVNRISDVKLLQGDLSEAWREGPAEFATVAMRFSLRDEVFERA 289 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 N + + P+ + WTFVR W+L + + G Sbjct: 290 SNRHVENGPQEAKEF---WTFVR---EPGGPWLLSAIQQG 323 >gi|92115162|ref|YP_575090.1| import inner membrane translocase, subunit Tim44 [Chromohalobacter salexigens DSM 3043] gi|91798252|gb|ABE60391.1| import inner membrane translocase, subunit Tim44 [Chromohalobacter salexigens DSM 3043] Length = 272 Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 62/221 (28%), Gaps = 44/221 (19%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 ILL A I +F F LR R + G + Sbjct: 92 FLDILLVALIAWFAFRLLR--------------------------ARRVATSEGPQHQAR 125 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129 + M + FD + FL A+ + + ++ + I++ Sbjct: 126 QPHQEATTTSPFSSAGTSMPSSGATPEWFDKERFLGGAKEHFMTLQRAWDNNDLARIQEY 185 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 V +Y + + + +N + + ++ + ++ G Sbjct: 186 VTPTLYNLLREERAQQPANN----RTEIVRLFAELGDVREIGQQAEASVLFHG-----VL 236 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 D++ + + W +R++ P W + + Sbjct: 237 DENGE--------RNEFNETWHLIRDLREGAP-WYVQGIEQ 268 >gi|121603693|ref|YP_981022.1| import inner membrane translocase subunit Tim44 [Polaromonas naphthalenivorans CJ2] gi|120592662|gb|ABM36101.1| import inner membrane translocase, subunit Tim44 [Polaromonas naphthalenivorans CJ2] Length = 330 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 21/252 (8%), Positives = 67/252 (26%), Gaps = 36/252 (14%) Query: 5 KMDSGDFLILLFAFIT----FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60 + I++FA + + +R + G+ + + I Sbjct: 91 GLGGAFSQIIMFALLALVVMVVIGFVMRKLKGRGASAPGATRSQPPFAFQGAGNAAEASI 150 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVM-------------------RDIVSVYTDFDPK 101 D+ + T L M V FD Sbjct: 151 PRSYSPSNVGNDASARPWERNTTLFDNMGTAAAPAAGGSMIGSGLSGSQSWGVPAGFDAD 210 Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN-EKNVKSSLVGID 160 FL + ++ + D++ + + ++ + + L+ R+++ + V + Sbjct: 211 GFLKACKANFVTLQDAWDRSDIQNLRSMMTDDMLEQIKTQLADRETHTGGVSNKTEVVML 270 Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN 220 + +++ + ++ ++ ++W + Sbjct: 271 NAQLLGIEEMSDVYMASVEF-----------SGMIKEDASSGASPFREVWNMTKP-RSGG 318 Query: 221 PNWVLISTKLGE 232 W++ + + Sbjct: 319 SGWLVAGVQALQ 330 >gi|291615430|ref|YP_003525587.1| import inner membrane translocase subunit Tim44 [Sideroxydans lithotrophicus ES-1] gi|291585542|gb|ADE13200.1| import inner membrane translocase subunit Tim44 [Sideroxydans lithotrophicus ES-1] Length = 275 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 65/227 (28%), Gaps = 41/227 (18%) Query: 5 KMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK 64 M G L+ + F + L + +K ++P + + E Sbjct: 90 GMGEGMGSFLMI-MLGVFAVMMLISMFRRK---QEPAMQYAGAAAPYGGTQE-------- 137 Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124 P + TDF + FL A+ S+ + + + Sbjct: 138 --------------PAQAYGGYAPVAAAGIPTDFPVESFLRSAKTSFIRLQAANDRKDLD 183 Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 I + + F + + + + V + + ++ E + ++R+ GQ Sbjct: 184 DIREYTTPEM---FAEVSMQIRERGDAPQKTDVDVVNADLLEVVTENDYAIASVRMSGQL 240 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + + +IW +N+ W+L + Sbjct: 241 ----RENNG--------TPESFDEIWHVQKNLKDDKSVWLLAGIQQV 275 >gi|254561446|ref|YP_003068541.1| hypothetical protein METDI3032 [Methylobacterium extorquens DM4] gi|254268724|emb|CAX24685.1| conserved hypothetical protein [Methylobacterium extorquens DM4] Length = 319 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 63/220 (28%), Gaps = 25/220 (11%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 I I F V + +R ++ G + ++ Sbjct: 123 IFQIGLIAFLVMMAVRFFRRRQEG--------------QPAMAGNAPHARSGLPPQGGMN 168 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 G + D + F S + I + V A+ +L Sbjct: 169 PGVNPMGGGLGGARPQPVQPVQVQPDDFQAF----ERSLQEIQSGYGREDVAALRRLATP 224 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK- 191 + F + L + + S V + + A E + T+ + +++ Sbjct: 225 EMVSYFEEDLRANAARGVVNRISDVKLLQGDLSEAWREGPAEFATVAMRFSLRDEVFERA 284 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 N + + P+ + WTFVR W+L + + G Sbjct: 285 SNRHVENGPQEAKEF---WTFVR---EPGGPWLLSAIQQG 318 >gi|255081604|ref|XP_002508024.1| mitochondrial protein translocase family [Micromonas sp. RCC299] gi|226523300|gb|ACO69282.1| mitochondrial protein translocase family [Micromonas sp. RCC299] Length = 341 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 42/144 (29%), Gaps = 9/144 (6%) Query: 93 SVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNV 152 F +F EA Y I E V ++ LV + D TR+ Sbjct: 173 QQIKGFTRDNFKAEAGQLYRQISQLIAENHVTSLRHLVTEKALTDIKREAKTREKAGWGK 232 Query: 153 KSSLVGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203 + + + +T+ A+YD L++ DP F Sbjct: 233 IVWEIRDLEKPVTLQGRMIFPNPQDKQMAFAQMTVGFRSHQRYAAYDAKGRLVAGDPNGF 292 Query: 204 GKVIDIWTFVRNIPPSNPNWVLIS 227 V D+W N W L + Sbjct: 293 LPVEDVWVLEHAFKLPNARWRLAA 316 >gi|301093253|ref|XP_002997475.1| Mitochondrial Protein Translocase (MPT) Family [Phytophthora infestans T30-4] gi|262110731|gb|EEY68783.1| Mitochondrial Protein Translocase (MPT) Family [Phytophthora infestans T30-4] Length = 467 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 73/193 (37%), Gaps = 4/193 (2%) Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF 98 + + K ++ + + + L SI + T + +++I DF Sbjct: 265 QQTTKQVKDKISDAQEEVLEVWETSQNPWVYRLSSIYDGLFGETPMAVAIKEIRRAEPDF 324 Query: 99 DPKDFLNEARNS-YEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157 +++ ++++F G ++K Y N ++ RKS + ++ Sbjct: 325 ILEEWKENIEEVVLPGVLEAFLRGNSRDLKKWFGEAAYSRMNIAIRERKSEGLVMDPHVL 384 Query: 158 GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVR-- 214 ID++++I A+ E+ I +R Q I+ +++ ++ + I+ F R Sbjct: 385 SIDNVEVIEATAEDKQAPIILMRFQAQQINCIRNREGEVVEGSEDEVLAYYYIFAFQRDY 444 Query: 215 NIPPSNPNWVLIS 227 + W ++ Sbjct: 445 DEEQETLRWRIVD 457 >gi|163851677|ref|YP_001639720.1| import inner membrane translocase subunit Tim44 [Methylobacterium extorquens PA1] gi|163663282|gb|ABY30649.1| import inner membrane translocase subunit Tim44 [Methylobacterium extorquens PA1] Length = 319 Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 64/220 (29%), Gaps = 25/220 (11%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 I I F V + +R ++ G + ++ Sbjct: 123 IFQIGLIAFLVMMAVRFFRRRQEG--------------QPAMAGNAPHARSGLPPQGGMN 168 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 G + D + F S + I ++ V A+ +L Sbjct: 169 PGVNPMGGGLGGARPQPVQPVQVQPDDFQAF----ERSLQEIQSAYGREDVAALRRLATP 224 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK- 191 + F + L + + S V + + A E + T+ + +++ Sbjct: 225 EMVSYFEEDLRANAARGVVNRISDVKLLQGDLSEAWREGPAEFATVAMRFSLRDEVFERA 284 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 N + + P+ + WTFVR W+L + + G Sbjct: 285 SNRHVENGPQEAKEF---WTFVR---EPGGPWLLSAIQQG 318 >gi|218530483|ref|YP_002421299.1| import inner membrane translocase subunit Tim44 [Methylobacterium chloromethanicum CM4] gi|218522786|gb|ACK83371.1| import inner membrane translocase subunit Tim44 [Methylobacterium chloromethanicum CM4] Length = 319 Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 64/220 (29%), Gaps = 25/220 (11%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 I I F V + +R ++ G + ++ Sbjct: 123 IFQIGLIAFLVMMAVRFFRRRQEG--------------QPAMAGNAPHARSGLPPQGGMN 168 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 G + D + F S + I ++ V A+ +L Sbjct: 169 PGVNPMGGGLGGARPQPVQPVQVQPHDFQAF----ERSLQEIQSAYGREDVAALRRLATP 224 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK- 191 + F + L + + S V + + A E + T+ + +++ Sbjct: 225 EMVSYFEEDLRANAARGVVNRISDVKLLQGDLSEAWREGPAEFATVAMRFSLRDEVFERA 284 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 N + + P+ + WTFVR W+L + + G Sbjct: 285 SNRHVENGPQEAKEF---WTFVR---EPGGPWLLSAIQQG 318 >gi|313111531|ref|ZP_07797330.1| hypothetical protein PA39016_003370006 [Pseudomonas aeruginosa 39016] gi|310883832|gb|EFQ42426.1| hypothetical protein PA39016_003370006 [Pseudomonas aeruginosa 39016] Length = 283 Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/229 (9%), Positives = 66/229 (28%), Gaps = 33/229 (14%) Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61 +F+ +L I F+ R + ++ + +G Sbjct: 87 MFMGDGFEGIQMLDILLIALVAFIAFRFIAARRR------------------QQNQGQPA 128 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 + G +++ + F+ + F+ AR + ++ + Sbjct: 129 MAGHAPMQREMPAQAPIFGGAAATAAPSPVINAPSWFNEERFVGAAREHFMSLQQHWDAN 188 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 ++ I + V ++ R +S+ + +++ + + T+ Sbjct: 189 EMDKIAEFVTPQM---LQWLKQERAEIGDAYQSTYIDNLVVQLDGVDDQADKTIATLTFS 245 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D+ + W R + P W++ + Sbjct: 246 GVSKTSRFDQG-----------EAFSESWRMERAQGENQP-WLVAGIRQ 282 >gi|303278680|ref|XP_003058633.1| mitochondrial protein translocase family [Micromonas pusilla CCMP1545] gi|226459793|gb|EEH57088.1| mitochondrial protein translocase family [Micromonas pusilla CCMP1545] Length = 335 Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 13/143 (9%) Query: 98 FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL- 156 F + FL+ A+ Y + + G + L R + Sbjct: 161 FTKEGFLDTAKEVYAEVNELIARGDHAKLRHLCSGSAASHVKREDKARSQGGWDRVEWKL 220 Query: 157 --------VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208 V + + T++ + A+YDK L++ DPE V D Sbjct: 221 LEHVQTPRVLQARLCSPAGDPAVSWAQFTVQFKTRETFAAYDKRGNLVAGDPEEVLVVED 280 Query: 209 IWTFVRNIPP----SNPNWVLIS 227 W + N W L + Sbjct: 281 AWVLEHGVGESNSKKNARWRLAA 303 >gi|218894631|ref|YP_002443501.1| hypothetical protein PLES_59241 [Pseudomonas aeruginosa LESB58] gi|218774860|emb|CAW30678.1| hypothetical protein PLES_59241 [Pseudomonas aeruginosa LESB58] Length = 284 Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 23/229 (10%), Positives = 72/229 (31%), Gaps = 32/229 (13%) Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61 +F+ +L I F+ R + ++ ++++ Sbjct: 87 MFMGDGFEGIQMLDILLIALVAFIAFRFIAARRR-----------------QQNQGQPAM 129 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 G + + + +F +++ + F+ + F+ AR + ++ + Sbjct: 130 AGHAPMQREMPAQAPIFGGAAAAAAAPSPVINAPSWFNEERFVGAAREHFMSLQQHWDAN 189 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 ++ I + V ++ R +S+ + D+++ + + T+ Sbjct: 190 EMDKIAEFVTPQM---LQWLKQERAEIGDAYQSTYIDNLDVQLDGVDDQADKTIATLTFS 246 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D+ + W R + P W++ + Sbjct: 247 GVSKTSRFDQG-----------EAFSESWRMERAQGENQP-WLVAGIRQ 283 >gi|75676350|ref|YP_318771.1| hypothetical protein Nwi_2165 [Nitrobacter winogradskyi Nb-255] gi|74421220|gb|ABA05419.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 312 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 49/172 (28%), Gaps = 9/172 (5%) Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + G V T D + F I ++ Sbjct: 148 RNAPAYAGPTPGSAAQTNARSGLGFGSVSNAAPLEITPSDYETF----ERLLGEIQAAWS 203 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 + V+ + L + F + L + S V + + A E T Y T+ Sbjct: 204 KEDVNTLHTLATPEMVSYFTEDLRANDARGVVNTVSDVKLLQGDLAEAWREGVTDYATVA 263 Query: 180 IVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + I + ++ ++ + + +IWTF R W L + + Sbjct: 264 LRYSLIDKTTERASGRIVDG-GDQPQEAAEIWTFARR---DGGKWELSAIQQ 311 >gi|188581463|ref|YP_001924908.1| import inner membrane translocase subunit Tim44 [Methylobacterium populi BJ001] gi|179344961|gb|ACB80373.1| import inner membrane translocase subunit Tim44 [Methylobacterium populi BJ001] Length = 318 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 61/220 (27%), Gaps = 26/220 (11%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 I I V L +R ++ G G Sbjct: 123 IFQIGLIALLVMLAVRFFRRRQEG---------------QPAMAGNSAYARSGPPPQGGA 167 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + G R D + F S I ++ V A+ +L Sbjct: 168 NPGMNPMGGGYGGGAARPQPVQVQPDDFQAF----ERSLNEIQAAYGREDVAALRRLATP 223 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK- 191 + F + L + + S V + + A E + T+ + +++ Sbjct: 224 EMVGYFEEDLRANAARGVVNRISDVKLLQGDLSEAWREGRVEFATVAMRFSLRDEVFERA 283 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 N + + P+ + WTFVR W+L + + G Sbjct: 284 TNRHVENGPQEAKEF---WTFVR---EPGGPWLLSAIQQG 317 >gi|15600721|ref|NP_254215.1| hypothetical protein PA5528 [Pseudomonas aeruginosa PAO1] gi|107104630|ref|ZP_01368548.1| hypothetical protein PaerPA_01005709 [Pseudomonas aeruginosa PACS2] gi|254237792|ref|ZP_04931115.1| hypothetical protein PACG_03888 [Pseudomonas aeruginosa C3719] gi|254243078|ref|ZP_04936400.1| hypothetical protein PA2G_03868 [Pseudomonas aeruginosa 2192] gi|9951866|gb|AAG08913.1|AE004965_5 hypothetical protein PA5528 [Pseudomonas aeruginosa PAO1] gi|126169723|gb|EAZ55234.1| hypothetical protein PACG_03888 [Pseudomonas aeruginosa C3719] gi|126196456|gb|EAZ60519.1| hypothetical protein PA2G_03868 [Pseudomonas aeruginosa 2192] Length = 284 Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 22/229 (9%), Positives = 71/229 (31%), Gaps = 32/229 (13%) Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61 +F+ +L I F+ R + ++ ++++ Sbjct: 87 MFMGDGFEGIQMLDILLIALVAFIAFRFIAARRR-----------------QQNQGQPAM 129 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 G + + + +F +++ + F+ + F+ AR + ++ + Sbjct: 130 AGHAPMQREMPAQAPIFGGAAAAAAAPSPVINAPSWFNEERFVGAAREHFMSLQQHWDAN 189 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 ++ I + V ++ R +S+ + +++ + + T+ Sbjct: 190 EMDKIAEFVTPQM---LQWLKQERAEIGDAYQSTYIDNLVVQLDGVDDQADKTIATLTFS 246 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D+ + W R + P W++ + Sbjct: 247 GVSKTSRFDQG-----------EAFSESWRMERAQGENQP-WLVAGIRQ 283 >gi|74318798|ref|YP_316538.1| hypothetical protein Tbd_2780 [Thiobacillus denitrificans ATCC 25259] gi|74058293|gb|AAZ98733.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC 25259] Length = 273 Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 57/175 (32%), Gaps = 15/175 (8%) Query: 57 RGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116 R + N T FD F EA+ ++ + Sbjct: 114 RRNAPQPAMQYAGVPPGHNPRLHDATPAGATAGPATGFPPGFDAAGFAREAKLNFIRLQA 173 Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F G + + ++ + + ++ R +++ V + D +++ AS E+N + Sbjct: 174 AFDAGNLDDLRAFTSPEIFAELSMQMAER---GDVQQTTDVMMLDAEVLEASDEDNRHVV 230 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 ++R + ++ + ++W + I WV+ + G Sbjct: 231 SVRF-----------TGQVRENEGAAPVALDEVWHLTKPIHGGGG-WVIAGIQQG 273 >gi|83311911|ref|YP_422175.1| hypothetical protein amb2812 [Magnetospirillum magneticum AMB-1] gi|82946752|dbj|BAE51616.1| Uncharacterized protein conserved in bacteria [Magnetospirillum magneticum AMB-1] Length = 347 Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 23/224 (10%), Positives = 63/224 (28%), Gaps = 35/224 (15%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 + + + ++ +L G +P + + + + + Sbjct: 157 LQLAIIGGLA-WLAYRLF------RGRSQPAVPAGNPYMRTAPGEHVEPMIGAGPVQPRI 209 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + D + F + + ++ +G + +++ Sbjct: 210 EREFDA-------------------SGGDQEAFTE----ILQGVQKAWSDGNLLQLKRFA 246 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT--IRIVGQFISAS 188 V ++ +S S K V + + + E Y+T + Sbjct: 247 TPEVVAFLSEDMSRNASEGVANKVENVTLLRGDVSESWSEGGFDYLTAILTFSCNDYMVR 306 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D + +P + WTFVR + W+L + + + Sbjct: 307 LD-TGAVADGNPHATVTHTEAWTFVR--SSNGGRWLLSAVQQVQ 347 >gi|46201583|ref|ZP_00054758.2| COG4395: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 343 Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 68/228 (29%), Gaps = 31/228 (13%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 + +LL I + + +T + + Sbjct: 145 GASFLGLLLQLAIIGGLVWLAFRLFRSRT--------------------QPAVPAGNPYM 184 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + + + + + L ++ ++ + D + F + ++ +G + ++ Sbjct: 185 RDTHGEHVEPMISGAPPLARIEKEF--DPSGNDQEAFTE----ILLGVQQAWSDGNLLSL 238 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT--IRIVGQF 184 ++ V ++ +S S K V + + + E Y+T + Sbjct: 239 KRFATPEVVSFLSEDMSRNASEGIANKVENVTLLKGDVSESWSEGGFDYLTAILTFSCND 298 Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D + +P + WTF+R + W+L + + + Sbjct: 299 YMVRLD-TGAVAEGNPRATVTHTEAWTFMR--STNGGRWLLSAVQQVQ 343 >gi|219115361|ref|XP_002178476.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217410211|gb|EEC50141.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 510 Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 25/198 (12%), Positives = 78/198 (39%), Gaps = 7/198 (3%) Query: 37 NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT 96 +K + + + D + + + S+ + + + ++++ + Sbjct: 303 YDKSGARDAKARVDHIREDAKEAWETSQNPWVYRVSSVYDTLTAESPETRAVKELRQLDP 362 Query: 97 DFDPKDF-LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155 +F +D+ + ++ I+ F EG+++ ++ + V++ ++ R+ + ++ Sbjct: 363 EFTLEDWKADVVEHTLPQIMQWFLEGRINQLKPWLGEGVFKRLAAEMTAREKEGVQIDTN 422 Query: 156 LVGIDDMKIINASIEENT---VYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWT 211 L+GI + +I+ +E I + + Q I+ K D+ ++ + + Sbjct: 423 LLGIMNSEILAIEPDEVNRGSPIIILHFMAQQINCVKKKKDDEIVEGAEDDIRANSYVTA 482 Query: 212 FVR--NIPPSNPNWVLIS 227 F R + NW ++ Sbjct: 483 FQREYDEEKGELNWKIVD 500 >gi|256083996|ref|XP_002578220.1| mitochondrial 39S ribosomal protein L45 [Schistosoma mansoni] gi|238663583|emb|CAZ34458.1| putative mitochondrial 39S ribosomal protein L45 [Schistosoma mansoni] Length = 327 Score = 71.9 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 8/146 (5%) Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE--KLVDS----RVYQDFN 139 K + + S F+ K F EA N Y D + + +LV + D Sbjct: 126 KDLSLLKSHEPSFNSKRFTIEAENIYVEAHDLLQNYRQNESRLFELVTEKALVDMTADLK 185 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199 K +V I ++++ +T+R Q I + Y++ L+ + Sbjct: 186 LRTLQWKFVGNIEPPRVVQIRCNELLS--KGNVYAQVTVRFYTQQILSIYNRFGRLLYGN 243 Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWVL 225 P+ V++ F R+I W L Sbjct: 244 PDTAVDVLEYVVFERHISDEYGTWRL 269 >gi|217322864|ref|YP_002324754.1| hypothetical protein ABBFA_000841 [Acinetobacter baumannii AB307-0294] gi|213985735|gb|ACJ56034.1| hypothetical protein ABBFA_000841 [Acinetobacter baumannii AB307-0294] Length = 190 Score = 71.9 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 20/199 (10%), Positives = 54/199 (27%), Gaps = 21/199 (10%) Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDI-----V 92 +K + + + DN + + G Sbjct: 8 QKKKLAANNPYAPNNGGQNPFGRSAAPTNTGDNTNIFGQSVGGGAATQAPFGSATTNSGN 67 Query: 93 SVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNV 152 + +P FL AR + I + I + + +Y + + + Sbjct: 68 QLPDGSEPASFLRVARQRFNHIQSINSASNIEEIRRYLTPELYNSMYNDIMENQDQ---- 123 Query: 153 KSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTF 212 + + +++++ E +++R + + +IW F Sbjct: 124 DVAEFSNLNAMVVDSATENGQYIVSVRF-----------TGTVSEDLNSLPQPFTEIWHF 172 Query: 213 VRNIPPSNPNWVLISTKLG 231 V+ + +WV+ + Sbjct: 173 VKPVGSQQ-DWVVAGIQQA 190 >gi|316932842|ref|YP_004107824.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris DX-1] gi|315600556|gb|ADU43091.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas palustris DX-1] Length = 358 Score = 71.9 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 59/193 (30%), Gaps = 10/193 (5%) Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF 98 +P +G + G + G + + D Sbjct: 173 RPDGADATGPMGRATHAMDQSAAQGTAQGTAQASQSGYRSGFGFGGGARNDRPLEIKPD- 231 Query: 99 DPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG 158 D + F + ++ + + +L + F L K+ K S V Sbjct: 232 DYEAF----ERLLGEVQAAWSNEDIDRLRELATPEMASYFAKDLEENKAANDINKVSDVK 287 Query: 159 IDDMKIINASIEENTVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRNIP 217 + + A E T + T+ + + + ++ + L++ E + +IWTF R Sbjct: 288 LLQGDLAEAWTEGETDFATVAMRFSLVDKTLERGTDRLVAGS-ETPIEATEIWTFTRR-- 344 Query: 218 PSNPNWVLISTKL 230 +W L + + Sbjct: 345 -PGASWELAAIQQ 356 >gi|302880097|ref|YP_003848661.1| import inner membrane translocase subunit Tim44 [Gallionella capsiferriformans ES-2] gi|302582886|gb|ADL56897.1| import inner membrane translocase subunit Tim44 [Gallionella capsiferriformans ES-2] Length = 281 Score = 71.9 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 25/217 (11%), Positives = 63/217 (29%), Gaps = 34/217 (15%) Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73 +L A + + + KK ++P + E Sbjct: 95 ILMALLAGAAVMFAIAMFRKK---QQPAMQSMQYAGAGAPYQEPVQPHYAGSSSAAIASP 151 Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133 P + FL A+ S+ + + ++ I + Sbjct: 152 ATGHIPADFP----------------VESFLRSAKTSFIRLQAANDRKDLNDIREYTTPE 195 Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 ++ + + + R + +++ V + +++ + E + ++R GQ Sbjct: 196 MFAEISMQMHERDN---TPQTTNVIAINGELLEVANEGDWAIASVRFTGQL--------- 243 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S + V +IW +N+ W+L + Sbjct: 244 ---SENNGTAENVDEIWHVQKNLKDDKAVWLLSGIQQ 277 >gi|170743208|ref|YP_001771863.1| import inner membrane translocase subunit Tim44 [Methylobacterium sp. 4-46] gi|168197482|gb|ACA19429.1| import inner membrane translocase subunit Tim44 [Methylobacterium sp. 4-46] Length = 316 Score = 71.9 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 54/180 (30%), Gaps = 11/180 (6%) Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYE 112 R + + G + P DF S Sbjct: 143 RRRQAEPAMAGGYARSGPPPGPNPMTGLGGGGARPAGPPQRDQVGISPADF-EAFERSLT 201 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 I ++ V + +L + F + L + + + V + + A E Sbjct: 202 QIQLAYGAEDVGTLRRLATPEMAGYFTEELQANAARGVINRIADVKLLQGDLSEAWREGP 261 Query: 173 TVYITIRIVGQFISASYDK-DNLLIS-SDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 T Y T+ + + ++ +++ DPE +IWTF R+ W+L + + Sbjct: 262 TDYATVAMRYALRDVTVERGSGRVVANGDPEAV----EIWTFRRDRGGP---WLLSAIQQ 314 >gi|299131769|ref|ZP_07024964.1| import inner membrane translocase subunit Tim44 [Afipia sp. 1NLS2] gi|298591906|gb|EFI52106.1| import inner membrane translocase subunit Tim44 [Afipia sp. 1NLS2] Length = 315 Score = 71.9 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 48/124 (38%), Gaps = 5/124 (4%) Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167 + +++ ++ + + + + L++ S K + V + + A Sbjct: 194 ERRLNEVQEAWSNEDMNRLHAIATPEMVSYMSQDLASNSSRGVINKVTNVKLLQGDLAEA 253 Query: 168 SIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 E +T Y T+ + + + ++ +I + +V +IWTFVR +W L Sbjct: 254 WREGSTDYATVAMHFSLVDKTMERSSGRMIEGS-DTPQEVTEIWTFVRR---PGADWELS 309 Query: 227 STKL 230 + + Sbjct: 310 AIQQ 313 >gi|325191254|emb|CCA26040.1| Mitochondrial Protein Translocase (MPT) Family puta [Albugo laibachii Nc14] Length = 409 Score = 71.5 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 64/152 (42%), Gaps = 4/152 (2%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNE-ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138 T + +R+I +F + + + A ++D+F +G+ ++K Y Sbjct: 248 GETSMGIAIREIRRAEPEFILEQWKEDIAEFVLPGVLDAFLKGRSRDLKKWFGEAAYNRI 307 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLIS 197 N ++ RKS + +++ ID++ +I AS E+ I +R Q I+ +++ ++ Sbjct: 308 NIAIRERKSEGLVMDPNVLEIDNVDVIEASAEDKQAPIILVRFRSQQINCIRNREGEIVE 367 Query: 198 SDPEIFGKVIDIWTFVR--NIPPSNPNWVLIS 227 + I+ F R + W ++ Sbjct: 368 GAEDEVLAYYYIFAFQREYDESTERLRWRIVD 399 >gi|116053679|ref|YP_794006.1| hypothetical protein PA14_72930 [Pseudomonas aeruginosa UCBPP-PA14] gi|296392393|ref|ZP_06881868.1| hypothetical protein PaerPAb_29757 [Pseudomonas aeruginosa PAb1] gi|115588900|gb|ABJ14915.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 285 Score = 71.5 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 20/229 (8%), Positives = 67/229 (29%), Gaps = 31/229 (13%) Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61 +F+ +L I F+ R + ++ + + + Sbjct: 87 MFMGDGFEGIQMLDILLIALVAFIAFRFIAARRR----------------QQNQGQPAMA 130 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 +++ +++ + F+ + F+ AR + ++ + Sbjct: 131 GHAPMQREMPAQAPIFGGATAAAAVAPSPVINAPSWFNEERFVGAAREHFMSLQQHWDAN 190 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 ++ I + V ++ R +S+ + +++ + + T+ Sbjct: 191 EMDKIAEFVTPQM---LQWLKQERAEIGDAYQSTYIDNLVVQLDGVDDQADKTIATLTFS 247 Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D+ + W R + P W++ + Sbjct: 248 GVSKTSRFDQG-----------EAFSESWRMERAQGENQP-WLVAGIRQ 284 >gi|78706782|ref|NP_001027194.1| CG11779, isoform C [Drosophila melanogaster] gi|16183135|gb|AAL13638.1| GH18370p [Drosophila melanogaster] gi|71854565|gb|AAZ52531.1| CG11779, isoform C [Drosophila melanogaster] Length = 430 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 57/152 (37%), Gaps = 1/152 (0%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + + D + + T L++ M ++V + FD KDFL + Sbjct: 274 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 333 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I++S G + ++ + + + K + S ++ I+++++ + E Sbjct: 334 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGVYLDSKILDIENIELAMGKVMEQG 393 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 + I Q I D+ + ++ DPE Sbjct: 394 PVLIITFQAQQIMCVRDQKSQVVEGDPEKPKP 425 >gi|298715200|emb|CBJ27872.1| Import inner membrane translocase subunit TIM44, mitochondrial precursor [Ectocarpus siliculosus] Length = 602 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 53/153 (34%), Gaps = 5/153 (3%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138 + +R++ + F +D+ + + + + +F G V +++ Y Sbjct: 440 AESDEGIGVRELRRLDPSFSVEDWKRDIQELFLPEFMSAFLRGDVKLLKQWTGEACYNKL 499 Query: 139 NDSLSTRKSNEKNVKSSLVGID--DMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196 RK++ + ++ I ++ I A + I ++ + Q I+ +K ++ Sbjct: 500 ASEAKQRKADGMVLDPHVLDIRQGEVLAIKADAGKANPTIALQFMCQQINCVRNKKGEIL 559 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + I F R W ++ Sbjct: 560 EGAEDDIRATYYILAFQREFNDDEAELRWRVVD 592 >gi|89897269|ref|YP_520756.1| hypothetical protein DSY4523 [Desulfitobacterium hafniense Y51] gi|89336717|dbj|BAE86312.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 315 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 74/224 (33%), Gaps = 11/224 (4%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 I L I ++ G ++T + D GK N Sbjct: 88 ISIALILGI-VYLIYIAWGS-SRRTW---KNQRSKGHSNYNNHNDSSPHPIDVTGKPITN 142 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 +++ + MR ++ +D + + R + I D++ + E + Sbjct: 143 AENLRRFNNAIQYTRENMRYYAESFSRWDRQFLIERVRQVFFWIQDAWTRQDLTGGENYI 202 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSS--LVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 S V Q ++ L S + ++ +D++ I++ + E++ Y + + I + Sbjct: 203 VSSVLQKYSLDLENMNSRGERNVIKEPVLHAEDIEFIHSYLGESSQYFVVMLRASMIDYT 262 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 D +I+ + + + W F WVL + Sbjct: 263 VDTSGKIIAGEDDNRLYFTEFWRF----TWQGDQWVLSEIYQED 302 >gi|119897609|ref|YP_932822.1| hypothetical protein azo1318 [Azoarcus sp. BH72] gi|119670022|emb|CAL93935.1| conserved hypothetical membrane protein [Azoarcus sp. BH72] Length = 304 Score = 70.7 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/203 (9%), Positives = 67/203 (33%), Gaps = 25/203 (12%) Query: 30 VLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMR 89 ++ ++ + ++G + + + + + P Sbjct: 127 IMRRRAAAQHQGGMQYAGASHGAPSARSYDVAMPQSAGNTPAPAAAVAEPAAG------- 179 Query: 90 DIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNE 149 ++ DFD + F+ +A+ ++ + S G + + + ++ + ++ R Sbjct: 180 ---NIPADFDVQGFVRQAKVNFIRLQASHDAGNLDDLREFTTPEMFAELKTNILAR---G 233 Query: 150 KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDI 209 ++ + + V D +++ E + +++ LL ++ ++ Sbjct: 234 QSAQQTDVLEIDAEVVEVVEEGSRYIVSVLFR-----------GLLREDRDAAPEQIHEV 282 Query: 210 WTFVRNIPPSNPNWVLISTKLGE 232 W V+ + W L + + Sbjct: 283 WHLVKP-RDGSAGWKLAGIQQAQ 304 >gi|290983241|ref|XP_002674337.1| predicted protein [Naegleria gruberi] gi|284087927|gb|EFC41593.1| predicted protein [Naegleria gruberi] Length = 520 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 57/175 (32%), Gaps = 2/175 (1%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN-SYEA 113 D R K K++++ + M FD L Sbjct: 334 DARTAQEKVKKSKEEDIPDTEADISSTSENALAMGAFKKRDPRFDLDLLLVTMETLIIPE 393 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQD-FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 I+ ++F H I+K V Y+ F + R + + ++ ++D+ + + Sbjct: 394 IMSAYFNDDAHTIKKFVSESCYRQVFFPRIQERVHTKIKYDAKILHVEDVMLYTTRYDAG 453 Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 + I Q+I ++ ++ P+ K +W ++ +W + Sbjct: 454 NPALVISCAVQYIHCMKNEAGEIVEGGPKDIRKENQMWILKQDESQETDDWYVSE 508 >gi|194217042|ref|XP_001501754.2| PREDICTED: similar to Mitochondrial ribosomal protein L45 [Equus caballus] Length = 304 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 50/171 (29%), Gaps = 4/171 (2%) Query: 56 ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115 K+ L E +R I +F KDF +A+N + Sbjct: 90 PPEGDARVSSLSKEGLARRAERLKKNVASQLSIRRIRECDANFKIKDFPEKAKNIFIEAH 149 Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENT 173 + L D L + V+S + + Sbjct: 150 LCLNNSDSDQLHTL--GNXIPDMVWDLKYKTVRWSFVESLEPPLVVQVRCSNLLNQGNMY 207 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 IT+R+ + A YD+ L+ ++ V++ F +++ +W Sbjct: 208 GQITVRMHTRQTLAIYDRFGRLMYGQEDVPKDVLEYVVFEKHLVNPYGSWR 258 >gi|220925671|ref|YP_002500973.1| import inner membrane translocase subunit Tim44 [Methylobacterium nodulans ORS 2060] gi|219950278|gb|ACL60670.1| import inner membrane translocase subunit Tim44 [Methylobacterium nodulans ORS 2060] Length = 318 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 73/220 (33%), Gaps = 28/220 (12%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 +L A + V L +R ++ E +G ++ S + LG G L Sbjct: 123 LLQVALLVGLVMLAVRFF--RRRQPEPAMAGGYARSGPGSGPGMGPLGGLGGGGGPRPLP 180 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + + +G D F + + ++ V + +L Sbjct: 181 NPAQRDQVGIGPA-------------DYDAF----ERTLTQVQLAYGAEDVATLRRLATP 223 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK- 191 + F + L + + S V + + A E T Y T+ + + ++ Sbjct: 224 EMVGYFTEELQANAARGVINRISDVKLQQGDLSEAWREGPTDYATVAMRYTLRDVTVERG 283 Query: 192 DNLLI-SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ + DPE ++WTF R+ W+L + + Sbjct: 284 SGRVVGTGDPEAV----EVWTFRRDRGGP---WLLSAIQQ 316 >gi|260361390|ref|ZP_05774455.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|308111106|gb|EFO48646.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] Length = 229 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 8/126 (6%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +RG+LG K G+ + SK ++ + + Sbjct: 90 GIQFMDILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNASKFEQPNMQNFEQQP 149 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + T + FD F+N +R Y + ++ ++ I Sbjct: 150 NTN--------AGGFTGFGAQTDVPHNYPPGFDQAAFINGSREHYRILQGAWNHNQLDTI 201 Query: 127 EKLVDS 132 E+ V Sbjct: 202 EEYVSP 207 >gi|195572942|ref|XP_002104454.1| GD20969 [Drosophila simulans] gi|194200381|gb|EDX13957.1| GD20969 [Drosophila simulans] Length = 335 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 60/208 (28%), Gaps = 6/208 (2%) Query: 24 FLQLRGVLGKKTG----NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFP 79 F +LR K EKP K + + Sbjct: 59 FKRLRKFKFVKMDLPNLREKPEDITKEEMRSRMKERGVLPPRPWMERPFHISCTGGIFEA 118 Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 + I+S +FL + S A + I + V R Y + Sbjct: 119 YVPPEGDGKKSIISTSGAKQKFEFLEKKSKSLMAAHTHMAAKDKYKIREFVSERCYPEMM 178 Query: 140 DSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197 ++ + K ++S + + E +T+R Q + A YD+ L+ Sbjct: 179 HNVKDKTIRWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLMH 238 Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 I V++ F ++I W L Sbjct: 239 GSEIITKDVLEYVVFEKHISNEYGKWRL 266 >gi|239905745|ref|YP_002952484.1| hypothetical protein DMR_11070 [Desulfovibrio magneticus RS-1] gi|239795609|dbj|BAH74598.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 315 Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 28/205 (13%), Positives = 58/205 (28%), Gaps = 24/205 (11%) Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87 R + ++T + S + + G + + P G L Sbjct: 134 RFMRSRRTATAQGPSFGQPMSRSYEAEPQSQAQQAAAGGWNNLGAAAQATAPAGPDL--- 190 Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 FD DFL A+ + + S+ + + IE F + + + Sbjct: 191 -------PPGFDAADFLAGAKALFARMQQSWSKRDLADIEAFATPA----FMADVRKQAA 239 Query: 148 NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 + + V + D K++ + + + PE V Sbjct: 240 EDPTPAPTDVLLVDAKLLEVRSQGGATIASAYFDVLMREDPK-------AGQPEQ---VR 289 Query: 208 DIWTFVRNIPPSNPNWVLISTKLGE 232 ++W F R W L + + + Sbjct: 290 EVWHFTRKETVPGDAWKLDAIQQLD 314 >gi|218672995|ref|ZP_03522664.1| putative transmembrane TIM family protein [Rhizobium etli GR56] Length = 113 Score = 69.6 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 4/112 (3%) Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 + +L + L +N + S V + I A E+ Y T+ + Sbjct: 1 DYGTLRRLTTPEAMSYLAEELGENATNGVRNRVSDVKLLQGDIAEAWREDGQEYATLAMR 60 Query: 182 GQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 I A ++D ++S D + ++WTFVR W L + + E Sbjct: 61 YSSIDAMVERDSGRVVSGDDRQPSESTEVWTFVRKSGAD---WKLAAIQGTE 109 >gi|296446386|ref|ZP_06888331.1| import inner membrane translocase subunit Tim44 [Methylosinus trichosporium OB3b] gi|296256159|gb|EFH03241.1| import inner membrane translocase subunit Tim44 [Methylosinus trichosporium OB3b] Length = 325 Score = 69.6 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 60/224 (26%), Gaps = 24/224 (10%) Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 + +LL + FF+ +L +F+G+ + G G Sbjct: 123 ASMIGLLLQLALIFFLA-RL-------------AFQWFAGRKLAGAFGGTGGAGPRPGGP 168 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 T + D F +++ V ++ Sbjct: 169 GFGFMGFPGGGGAQTPERSAPISLSQA----DFPAF----ERLLGETQEAYSREDVARLD 220 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS- 186 L + F + L + + S V + + A E Y T+ + + Sbjct: 221 ALTTPEMASYFAEDLKSNAREGVVNRISGVKLLQGDLAEAWREGGDEYATVAMRFSLVDQ 280 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ D + ++WTF R W L + + Sbjct: 281 FVERATGRVVRGDA-TPTQSTEVWTFRRPAGRGPEAWRLSAIQQ 323 >gi|146280567|ref|YP_001170720.1| hypothetical protein PST_0171 [Pseudomonas stutzeri A1501] gi|145568772|gb|ABP77878.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] gi|327478845|gb|AEA82155.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 280 Score = 69.2 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 69/232 (29%), Gaps = 40/232 (17%) Query: 2 VFIKMDS---GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58 +F+ IL+F I F +F L + ++P + + Sbjct: 84 MFMGDGFEGIQFMDILIFGLIAFLLF----RFLAARRRQQQPAMAGHAPMQREMPQQPAT 139 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 G+ +++ F+ ++F+ AR + ++ + Sbjct: 140 ------------------SIFGGSAAPVAAAPVINAPAWFNEQNFVAAAREHFLSLQQHW 181 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 ++ I + V ++ R +S+ + +++ T+ Sbjct: 182 DANEMDKIAEFVTPQLLGFLKQ---ERAEIGDAYQSTYIDDLQIQLDGVDDNAEKTTATL 238 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D+ +P + W R + P W++ + Sbjct: 239 TFSGVAKTSRFDQ------GEP-----FSESWRMERVQGENQP-WLVAGIRQ 278 >gi|144897341|emb|CAM74205.1| Mitochondrial import inner membrane translocase, subunit Tim44 [Magnetospirillum gryphiswaldense MSR-1] Length = 327 Score = 69.2 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 54/173 (31%), Gaps = 9/173 (5%) Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVY-TDFDPKDFLNEARNSYEAIVDSF 118 T G E P T R +D D F E + ++ Sbjct: 161 RTQTAGADMGAPAYQREAMPGATGNGDSNRVAKEFEVSDDDQNQF----SRIIEGVQKAW 216 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 +G A+ +LV V + L+ ++N V + I E Y T Sbjct: 217 SDGNPVALRQLVTPEVAGWIGEDLARDQANGVRNVVEDVTLLKGDISETWSENGMDYATA 276 Query: 179 RIVGQFISA-SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 I DN ++ DP + + WTFVR + WVL + + Sbjct: 277 IITFSARDYMVRLSDNEVVEGDPRNAVETTEAWTFVR---GAGGTWVLSAIEQ 326 >gi|332029058|gb|EGI69072.1| Putative 39S ribosomal protein L45, mitochondrial [Acromyrmex echinatior] Length = 337 Score = 69.2 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 65/199 (32%), Gaps = 3/199 (1%) Query: 29 GVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVM 88 G L +K E+P + S G K+ F ++ + Sbjct: 86 GFLPQKPWKERPAFISSTSSIFESYVAPEGDGKYSVITKEGAKQKFT-FFEKKSKSFMAI 144 Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148 R I S F FL EA + Y+ ++ I K V Y + + + Sbjct: 145 RKIKSFDDSFKTSFFLEEALDIYQKAYEALASKNEEEIIKYVTEMAYPKITHNTMNKTIH 204 Query: 149 EKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 K ++S + + E +T+R Q + A YD+ LI + V Sbjct: 205 WKFLESLEPARLVHARTTDVITKENVFAQLTVRFHTQQVLAIYDRFGHLIQGSEILRKDV 264 Query: 207 IDIWTFVRNIPPSNPNWVL 225 ++ F +++ W + Sbjct: 265 LEYIVFEKHLANEYGIWRI 283 >gi|156086672|ref|XP_001610745.1| mitochondrial inner membrane translocase subunit TIM44 [Babesia bovis T2Bo] gi|154797998|gb|EDO07177.1| mitochondrial inner membrane translocase subunit TIM44, putative [Babesia bovis] Length = 395 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 59/146 (40%), Gaps = 2/146 (1%) Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLV 130 + + + + L K ++++ + + FD +F+ + IV + +G ++E Sbjct: 224 NPVFDQLFGNSTLAKAVKEMKRLDSSFDLPEFIESVEHVVAPHIVQCYLDGDSKSLEAHC 283 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYITIRIVGQFISASY 189 + N S+ R + + +++ + D+++ +EE + Q I+ Sbjct: 284 GELAFNVLNASIRERDLQKLYLDPNILILKDVELKGGMTMEEGYPWFIFNFKTQQINCLR 343 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRN 215 D +++ + + +V+ R+ Sbjct: 344 DSRGHVVAGEIDDIRQVVYSMAVSRH 369 >gi|302036897|ref|YP_003797219.1| hypothetical protein NIDE1559 [Candidatus Nitrospira defluvii] gi|300604961|emb|CBK41294.1| conserved exported protein of unknown function [Candidatus Nitrospira defluvii] Length = 343 Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 56/149 (37%), Gaps = 13/149 (8%) Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148 I S T D F + S I ++ + + A+ +LV + + F+ L+ S Sbjct: 201 ATIDSEITSADKAAF----QQSLTDIQTAWGQQDLSALRRLVTPEMLEYFSTGLAELTSQ 256 Query: 149 EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY------DKDNLLISSDPEI 202 ++ + V + ++ + +E Y T+ + + LI E Sbjct: 257 DQANRVEDVVLLQAEVRESWVENTVQYATVSLHWSARDYTVSLSKAPGDAGYLIEGSAEK 316 Query: 203 FGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + ++WTF+R + W+L + + Sbjct: 317 PIETTEVWTFMRY---QHGKWLLSAIQQV 342 >gi|254230446|ref|ZP_04923825.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|151937047|gb|EDN55926.1| conserved hypothetical protein [Vibrio sp. Ex25] Length = 209 Score = 68.8 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 8/128 (6%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +RG+LG K G+ + SK ++ + + Sbjct: 90 GIQFMDILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNFEQQP 149 Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 +N + FD F+N +R Y + ++ ++ I Sbjct: 150 NTNNGGFGGFGAQTDVP--------HNYPPGFDQAAFINGSREHYRILQGAWNHNQLKTI 201 Query: 127 EKLVDSRV 134 E+ V + Sbjct: 202 EEYVSPSL 209 >gi|307214389|gb|EFN89460.1| Probable 39S ribosomal protein L45, mitochondrial [Harpegnathos saltator] Length = 334 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 67/200 (33%), Gaps = 4/200 (2%) Query: 29 GVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVM 88 G + +K +E+P + S G K+ ++ + Sbjct: 82 GFVPQKQWSERPAYMSCTPIIFESYIAPEGDGKY-SAITKEGAKQKYSFLKKKSKSLLAI 140 Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK-VHAIEKLVDSRVYQDFNDSLSTRKS 147 R I S F F+ EA + Y+ ++ + + + V Y ++ + Sbjct: 141 RKIKSFDDMFKTSHFIEEAIDIYKKAYEALAAKEGEEKLLQYVTETAYPKMIHNMMDKTI 200 Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 + K ++S + + E IT+R Q I A YD+ LI + Sbjct: 201 HWKFLESLEPARVVHMRTTDVITKENVFAQITVRFHTQQILAIYDRFGRLIQGSEILRKD 260 Query: 206 VIDIWTFVRNIPPSNPNWVL 225 V++ F +++ W + Sbjct: 261 VLEYIVFEKHLANEYGIWRI 280 >gi|260829205|ref|XP_002609552.1| hypothetical protein BRAFLDRAFT_285685 [Branchiostoma floridae] gi|229294914|gb|EEN65562.1| hypothetical protein BRAFLDRAFT_285685 [Branchiostoma floridae] Length = 349 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 47/142 (33%), Gaps = 5/142 (3%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE---GKVHAIEKLVDSRVYQDFNDSLST 144 +R I +F K F A+ Y+ + H + +LV + Y D Sbjct: 127 IRKIKEFDKEFSTKTFAGTAQEIYKEANNCLANFNTRNRHRLHQLVTEKCYPDMVRGFKF 186 Query: 145 RKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI 202 R +S + S +T+R+ + A YD+ L D + Sbjct: 187 RTIRWTFQESVEPPKVVHVRHNDLISKGNVYGQVTVRMHTRQTLAIYDRFGRLEFGDENL 246 Query: 203 FGKVIDIWTFVRNIPPSNPNWV 224 V++ F R++ +W Sbjct: 247 VKDVLEYVVFERHLVNPYSSWR 268 >gi|253997457|ref|YP_003049521.1| import inner membrane translocase subunit Tim44 [Methylotenera mobilis JLW8] gi|253984136|gb|ACT48994.1| import inner membrane translocase subunit Tim44 [Methylotenera mobilis JLW8] Length = 270 Score = 68.4 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 20/174 (11%), Positives = 55/174 (31%), Gaps = 15/174 (8%) Query: 57 RGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116 R R + DF FL A+ S+ + Sbjct: 110 RKPQQPNMQYAGAGNAYQTPSTEPVLSSGNATRSSQPIPNDFPVDSFLRNAKASFIRLQA 169 Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 + ++ + + V+ + + + R +V+++ V + +++ + E+ Sbjct: 170 ANDRKDINDVREYTTPEVFAEISMQMQER---GSSVQTTEVVAINAELLEVANEDAYTIA 226 Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++R GQ + + L + ++W ++ + W+L + Sbjct: 227 SVRFTGQL----RENNGAL--------ESIDEVWHIQKDTTNTQEKWLLAGIQQ 268 >gi|224123246|ref|XP_002319031.1| predicted protein [Populus trichocarpa] gi|222857407|gb|EEE94954.1| predicted protein [Populus trichocarpa] Length = 233 Score = 68.4 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 54/159 (33%), Gaps = 14/159 (8%) Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 L + T + F EA Y+ I G A+ K V ++Y + + + Sbjct: 71 ELKNAYAIVKLRKTGYSKHKFYVEAIKLYKEINTLLANGDKTALRKAVTEKMYSELKNEI 130 Query: 143 STRKSNEK----NVKSSLVGI----------DDMKIINASIEENTVYITIRIVGQFISAS 188 R+S + + ++ + + + + + +T+ I + + Sbjct: 131 KQRQSAWNMSKLYWEMIEPAVLIRTLRARLATEIGVDKSDLNKVFIQLTLEIKTKQKFEA 190 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 YD ++ D V +IW F +++ W L Sbjct: 191 YDSKGARVAGDKNKEILVREIWVFEKSLFHPGAYWRLCG 229 >gi|148907785|gb|ABR17018.1| unknown [Picea sitchensis] Length = 190 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 11/139 (7%) Query: 98 FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157 + F EA Y+ I +G ++ +LV +Y F + R++ V ++ Sbjct: 50 YSKPKFYEEAIQLYKEINSHLAQGDRTSLRQLVTENMYTIFKREIKQRETTWSRVHWEMI 109 Query: 158 GI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208 + + +++ V IT+ I+ A+YD +LI+ + V D Sbjct: 110 EPTVRIRTLRARMIAVDKNNLDNAFVQITLEILTNQKFAAYDLKGILIT--EDSKVLVED 167 Query: 209 IWTFVRNIPPSNPNWVLIS 227 IW F R++ W L Sbjct: 168 IWVFERSLFQPGARWRLCG 186 >gi|319761670|ref|YP_004125607.1| import inner membrane translocase subunit tim44 [Alicycliphilus denitrificans BC] gi|330823541|ref|YP_004386844.1| import inner membrane translocase subunit Tim44 [Alicycliphilus denitrificans K601] gi|317116231|gb|ADU98719.1| import inner membrane translocase subunit Tim44 [Alicycliphilus denitrificans BC] gi|329308913|gb|AEB83328.1| import inner membrane translocase subunit Tim44 [Alicycliphilus denitrificans K601] Length = 332 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 17/226 (7%), Positives = 65/226 (28%), Gaps = 23/226 (10%) Query: 18 FITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 + + ++ R + G + + + + + + ++ Sbjct: 119 MVVIGMVMRSRRPAASQEGAAPFAFQGAGAATPAEAQAPRQYSPDKVGNDASARPWESTG 178 Query: 73 SINELFPIGTRL----NKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 + G V DFD FL A+ ++ + ++ + + Sbjct: 179 MAYQAPATGGGSMIGSALAGSQNWGVPADFDVAGFLAAAKRNFTTLQAAWDRSDIATLRS 238 Query: 129 LVDSRVYQDFNDSLSTRKSN--EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 ++ + + LS R+S+ + + V + + +++ + ++ Sbjct: 239 MMTDGMVDEIRAQLSERESHRGGEQPNHTDVVMLEAQLLGIEDLGDGYMASVEF------ 292 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ++ ++W + + W++ + + Sbjct: 293 -----SGMIREEPSAGPSPFREVWNMTKP-KNGSVGWLVAGVQALQ 332 >gi|152986284|ref|YP_001351640.1| hypothetical protein PSPA7_6329 [Pseudomonas aeruginosa PA7] gi|150961442|gb|ABR83467.1| hypothetical protein PSPA7_6329 [Pseudomonas aeruginosa PA7] Length = 281 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 24/232 (10%), Positives = 69/232 (29%), Gaps = 41/232 (17%) Query: 2 VFIKMDS---GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58 +F+ ILL A + F+ + + ++R ++ Sbjct: 87 MFMGDGFEGIQMLDILLIALVA-FIAFRF----------------------IAARRRQQA 123 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + PI +++ + F+ + F+ AR + ++ + Sbjct: 124 QAQPAMAGHAPMQREMPAQAPIFGGAAAAPSPVINAPSWFNEERFVGAAREHFMSLQQHW 183 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 ++ I + V ++ R +S+ + +++ + + T+ Sbjct: 184 DANEMDKIAEFVTPQM---LQWLKQERAEIGDAYQSTYIDNLAVQLDGVDDQADKTIATL 240 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D+ + W R + P W++ + Sbjct: 241 TFSGVSKTSRFDQG-----------EAFSESWRMERAQGENQP-WLVAGIRQ 280 >gi|330505764|ref|YP_004382633.1| import inner membrane translocase subunit Tim44 [Pseudomonas mendocina NK-01] gi|328920050|gb|AEB60881.1| import inner membrane translocase, subunit Tim44 [Pseudomonas mendocina NK-01] Length = 284 Score = 68.0 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 68/232 (29%), Gaps = 36/232 (15%) Query: 2 VFIKMDS---GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58 +F+ +L+F I F +F L + ++P + +R+ Sbjct: 85 MFMGDGFEGLQIMDMLIFGLIAFLLF----RFLAARRARQQP---QMAAAGAPYQREMPN 137 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + P +++ F+ + F+ R + + + Sbjct: 138 ADNAPAAGSNIFGGRLASAAP-----------VINAPAWFNEQSFIAAGREHFMNLQQHW 186 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 ++ I + V ++ R +S+ + +++ T+ Sbjct: 187 DADEMDKIAEFVTPQLLDFLK---RERAELGDGFQSTYIDDLQVQLDGVDDNAEKTIATL 243 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D+ +P + W R + P W++ + Sbjct: 244 TFSGVSKTSRFDQ------GEP-----FSESWRLERAQGDNQP-WLIAGIRQ 283 >gi|160900892|ref|YP_001566474.1| import inner membrane translocase subunit Tim44 [Delftia acidovorans SPH-1] gi|160366476|gb|ABX38089.1| import inner membrane translocase subunit Tim44 [Delftia acidovorans SPH-1] Length = 338 Score = 68.0 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 16/199 (8%), Positives = 56/199 (28%), Gaps = 13/199 (6%) Query: 35 TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSV 94 GN ++ + ++ ++ + V Sbjct: 152 AGNMGGNVDSAPLARQYNPEKVGNDASARPWEQNHQPAALASGSGVQIGSALAGSQNWGV 211 Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK-SNEKNVK 153 FD + FL A+ ++ + ++ + ++ ++ + + LS R+ Sbjct: 212 PEGFDTEGFLTAAKRNFVTLQSAWDRSDIASLRAMMTDEMLTEIRGQLSEREVQRPGQPN 271 Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213 + V + D +++ N ++ ++ ++W Sbjct: 272 QTDVVMIDAQLLGIEDLGNDYMASVEF-----------SGMIREDASAGPTPFREVWNMT 320 Query: 214 RNIPPSNPNWVLISTKLGE 232 + + W++ + + Sbjct: 321 KP-KSGSSGWLVAGVQALQ 338 >gi|320164944|gb|EFW41843.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 499 Score = 68.0 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 63/149 (42%), Gaps = 3/149 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 + + V+ +I V +F+ +F + + ++++ F+ + A+E+ ++ + Sbjct: 341 SEIGMVIGEINRVDPNFNVDEFTIDCEKQIIPILMEAVFKSDLKALEQWCHEVCFRRLLE 400 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + +R++ ++ ++ ++ +++ A + E + Q+ + + +I DP Sbjct: 401 PIKSRRALGVQLEHKVMELNGVELRTAQLMEQGPTLVFIFNMQYTRVLRNSSSEIIEGDP 460 Query: 201 EIFGKVIDIWTFVRNIPPSN--PNWVLIS 227 + R++ + +W +I Sbjct: 461 DQILAATYAMALTRDLNVYDTHASWRVID 489 >gi|154247196|ref|YP_001418154.1| import inner membrane translocase subunit Tim44 [Xanthobacter autotrophicus Py2] gi|154161281|gb|ABS68497.1| import inner membrane translocase subunit Tim44 [Xanthobacter autotrophicus Py2] Length = 325 Score = 68.0 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 49/170 (28%), Gaps = 12/170 (7%) Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 P G+ ++D + V D F I + + Sbjct: 162 ARGDWRAASAPPAGSGRPPGVQDEIGVTP-ADLDAF----ERLLGIIQGAVSREDQAELR 216 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 ++ D L + S V + + A E N Y T+ + Sbjct: 217 ANTTPEMFGYLADELRENAERGLRNQVSDVKLLQGDVAEAWREGNREYATVAMRYASRDV 276 Query: 188 SYDK-DNLLISSDPEIFGKVIDIWTFVRN-----IPPSNPNWVLISTKLG 231 D+ ++S G+ ++WTFVR+ + W L + + Sbjct: 277 MLDRASGKVVSG-AAGIGESTEVWTFVRDRIAGPTGGAAGLWRLSAIQGA 325 >gi|209880173|ref|XP_002141526.1| Tim44-like domain-containing protein [Cryptosporidium muris RN66] gi|209557132|gb|EEA07177.1| Tim44-like domain-containing protein [Cryptosporidium muris RN66] Length = 452 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 14/160 (8%) Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN-SYEAIVDSFFEGKVHAIEKLV 130 + I E T ++++ V F+ +F+ I+D++ G + Sbjct: 269 NPIIEKLFGETEFALAIKEMRKVDPTFNTVEFIETVETVIIPHIIDAYLVGNDDVLRLHC 328 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA-------------SIEENTVYIT 177 Y + S R+S + + +L+ I ++ + A + + + Sbjct: 329 GITAYAALSASCKERRSMKLKLDPTLLLIRNVDLKGAKRWNVNSNDSNEYNNFNSYPWFI 388 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217 Q I+ D + ++S + +V+ R+ Sbjct: 389 FTFSTQQINCLRDYEGKVVSGSVDDIREVVYSMAITRHPN 428 >gi|91786763|ref|YP_547715.1| import inner membrane translocase subunit Tim44 [Polaromonas sp. JS666] gi|91695988|gb|ABE42817.1| import inner membrane translocase, subunit Tim44 [Polaromonas sp. JS666] Length = 333 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 23/248 (9%), Positives = 71/248 (28%), Gaps = 32/248 (12%) Query: 5 KMDSGDFLILLFAFIT-------FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER 57 + +++FA + F+ +L+G F G + Sbjct: 98 GLGEAFGQVIMFALLALVIMVAVGFIMRKLKGGGAGAAAPRTQEPFAFQGAGNAATPRNY 157 Query: 58 GIITLGKGKKKDNLDSINELFPIGTRLNKVMR------------DIVSVYTDFDPKDFLN 105 +G + F V FD + FL Sbjct: 158 SPENVGNDASARPWERSGMAFDANRDAGATPATGSMIGSALLGTQTWGVPAGFDAEGFLK 217 Query: 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN-EKNVKSSLVGIDDMKI 164 ++ ++ + D++ + ++ ++ + + L+ R+S+ V + V + + ++ Sbjct: 218 ASKANFVTLQDAWDRSDIQSLRAMMTDDMLEQIKAQLADRESHTGGVVNRTEVVMLNAQL 277 Query: 165 INASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 + +T ++ ++ ++W + + W+ Sbjct: 278 LGIEELSDTYMASVEF-----------SGMIREDASAGASPFREVWNMTKPRNGGSG-WL 325 Query: 225 LISTKLGE 232 + + + Sbjct: 326 VAGVQALQ 333 >gi|194212576|ref|XP_001497048.2| PREDICTED: similar to Import inner membrane translocase subunit TIM44, mitochondrial [Equus caballus] Length = 488 Score = 67.6 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 1/120 (0%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T +++V+ +I+ V FD FL + N ++++ G++ ++ Y Sbjct: 297 TEMSEVLTEILRVDPAFDKDRFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 356 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200 + K+ S ++ ID++ + + E + I Q + + ++ DP Sbjct: 357 PIQQAKALGLQFHSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMVVKNPKGEVVEGDP 416 >gi|224000153|ref|XP_002289749.1| tim44-like protein [Thalassiosira pseudonana CCMP1335] gi|220974957|gb|EED93286.1| tim44-like protein [Thalassiosira pseudonana CCMP1335] Length = 252 Score = 67.6 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 25/201 (12%), Positives = 66/201 (32%), Gaps = 12/201 (5%) Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF 98 + K K D + S+ + + R + + DF Sbjct: 42 QQRVEKAHQKITHLKEDAAEAWETSQNPWVYRASSVYDTLTAESEFAAASRQLQKLDPDF 101 Query: 99 DPKDFLNEA-RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157 +++ + ++ I+ F EG++ ++ + VY + RK + ++++ Sbjct: 102 TLENWKRDVVEHTLPQIMKLFLEGRIQELKPWLGEAVYNRLAAEVRARKKEGVQMDTNIL 161 Query: 158 GIDDMKIINASIEENTVYIT--------IRIVGQFISASYDKD-NLLISSDPEIFGKVID 208 I + +I+ + ++V + + + Q I K + ++ + Sbjct: 162 AIMNAEILACELAGSSVNVDKGDDPILLLHFMCQQIHCVRKKKIDDIVEGSEDDIRANSY 221 Query: 209 IWTFVRNIPPS--NPNWVLIS 227 + F R NW ++ Sbjct: 222 VVAFQREYNEEKMELNWKIVD 242 >gi|284043595|ref|YP_003393935.1| import inner membrane translocase subunit Tim44 [Conexibacter woesei DSM 14684] gi|283947816|gb|ADB50560.1| import inner membrane translocase subunit Tim44 [Conexibacter woesei DSM 14684] Length = 216 Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 58/152 (38%), Gaps = 6/152 (3%) Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 ++ + I FDP F A ++ A+ ++ + A L+ +++ ++ ++ Sbjct: 50 APDEGIALIRRADPAFDPAGFERRAEQAFLALGQAWQDRDREAARPLMSPGLHKSWSANV 109 Query: 143 STRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD-KDNLLISSDPE 201 K + +D + + +T+R +IS D + + +I+ D Sbjct: 110 QMFVDEHKRNVLEGMRVDSLAPVKVVHGNAFDALTVRFTATWISYEVDERTDRVIAGD-R 168 Query: 202 IFGKVIDIWTFVRNIPPSNP----NWVLISTK 229 + +TF R++ +WVL + Sbjct: 169 TPQSFTEFFTFQRSVDARTTDGRFDWVLSRLQ 200 >gi|322391461|ref|ZP_08064930.1| NinF protein [Streptococcus peroris ATCC 700780] gi|321145544|gb|EFX40936.1| NinF protein [Streptococcus peroris ATCC 700780] Length = 331 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 25/211 (11%), Positives = 66/211 (31%), Gaps = 24/211 (11%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 IL+ + F+ L L D+ + N Sbjct: 85 MTILIMFGVGAFLLYMLIKYL----------------------NDQNTPPETPYRRHTTN 122 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + N+ + + +FD F + A+ Y + ++ + +A+ L Sbjct: 123 YEPEPTSHRRVENNNQAIDRLRYHDPNFDASTFTSWAKEVYIQLQAAWTKKDWNAVRSLE 182 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS--AS 188 + +Y+ + L ++ V +++++I + + + + I+ + Sbjct: 183 SASLYKQHSTQLEDYIQSKTTNVLERVCVENVRIKDFNSNPDGNDTLVVILSSTLRDYVV 242 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 D+ +I +P+ + F+R Sbjct: 243 EDESRKVIEGNPQKDLFTVYQMNFIRKHGSQ 273 >gi|260220358|emb|CBA27818.1| hypothetical protein Csp_A04170 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 319 Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 24/241 (9%), Positives = 76/241 (31%), Gaps = 25/241 (10%) Query: 5 KMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEK---PFSGFFSGKYVFSKRDERGIIT 61 + +L+F + V + + + + + PF+ +G + Sbjct: 91 GLGEAFGNVLMFGLLALGVMMLIGMFMRSRKPAAQAASPFAFQGAGPAPVQDLKQYRAEN 150 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDI---------VSVYTDFDPKDFLNEARNSYE 112 +G + + +F + I V FD + FL A+ ++ Sbjct: 151 VGNDASARPWERSSMVFEAPQPAAQGGSMIGSALMGSQTWGVPAGFDTEGFLKSAKANFV 210 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN-EKNVKSSLVGIDDMKIINASIEE 171 + ++ V A+ ++ + ++ L+ R+++ V + V + D +++ Sbjct: 211 TLQAAWDRSDVAALRAMMTDDMTREIQTQLAERETHTGAGVNHTDVVMIDARLLGIEELP 270 Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + ++ ++ ++W + + W++ + Sbjct: 271 DEYMASVEF-----------SGMIREEPSAGPSPFREVWNMTK-AKNGSSGWLVAGVQAL 318 Query: 232 E 232 + Sbjct: 319 Q 319 >gi|87311137|ref|ZP_01093261.1| hypothetical protein DSM3645_18996 [Blastopirellula marina DSM 3645] gi|87286228|gb|EAQ78138.1| hypothetical protein DSM3645_18996 [Blastopirellula marina DSM 3645] Length = 707 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 6/137 (4%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 + + FD F A N++ I ++ + + +I V VY+ F+ +S + Sbjct: 118 LEALKESDPSFDLPQFKQRAENAFGKIQRAWSDQDLASIHAFVSDGVYERFSLQISEQHE 177 Query: 148 NEKNVKSSLVGIDDMKIINA----SIEENTVYITIRIVGQFISASYDKD-NLLISSDPEI 202 V I M+ I + + I++R+ + D+ LI Sbjct: 178 LGYRNVIEDVRILKMEPIEIIASRNDQNAFEVISLRVQARGKDYRVDRTTGKLIPGSKSN 237 Query: 203 FGKVIDIWTFVRNIPPS 219 ++WTF+R Sbjct: 238 -ESFSEVWTFLRRRGAQ 253 >gi|240849189|ref|NP_001155742.1| 39S ribosomal protein L45, mitochondrial [Acyrthosiphon pisum] gi|239789330|dbj|BAH71295.1| ACYPI008057 [Acyrthosiphon pisum] Length = 330 Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 62/195 (31%), Gaps = 9/195 (4%) Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93 +T + I+ K+K EL + +R I Sbjct: 95 RTTFINNTGSIIEPYVPPEGDGKISPISTAGAKQK------IELLKKKKDTWQAIRKIRQ 148 Query: 94 VYTDFDP-KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNV 152 +F+ +F+ +A++ Y + + + V + Y + ++ + + Sbjct: 149 NEEEFELYPEFITKAQDIYLKAHTTMVNKDKQNLLQYVTEKAYVEMLHNIDNKTLRWSFI 208 Query: 153 KSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210 KS + + + IT+R + + +D+ LI + V++ Sbjct: 209 KSIEPPRVVHARVTDIITQDNLFAQITVRFHTKQTLSVFDRFGRLIFGSDVVAKDVLEYV 268 Query: 211 TFVRNIPPSNPNWVL 225 F ++I W + Sbjct: 269 VFEKHIVNQYGMWRI 283 >gi|316966353|gb|EFV50945.1| zinc finger protein [Trichinella spiralis] Length = 763 Score = 66.1 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 2/144 (1%) Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 ++ + I S DFDP F++EA Y + + +LV Y + + L+ Sbjct: 575 NSRAGKKIRSYDADFDPVIFIDEALKIYLDAHSALQNRDSDRLHELVTEYAYPEMWEELN 634 Query: 144 TRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201 + + V+S + + +T+R+ + A YD+ L + Sbjct: 635 LKSLRWQFVESVEPARVVQMRTSSVMQEDNIFAQVTVRMHTKQKLAIYDQFGRLYMGNET 694 Query: 202 IFGKVIDIWTFVRNIPPSNPNWVL 225 + V++ + +++ W L Sbjct: 695 VPRDVLEYIVYEKHLSNLYGKWRL 718 >gi|313216757|emb|CBY38005.1| unnamed protein product [Oikopleura dioica] gi|313227382|emb|CBY22529.1| unnamed protein product [Oikopleura dioica] Length = 393 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 7/160 (4%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138 N ++ I V FD + F+ I+++ V IE Q F Sbjct: 229 TSNSYNDTIKAIRQVDKKFDQEAFVQFLESEMIPIILEAKAINDVAVIEDWCLDAPAQRF 288 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 + N+ + + ++I++ ++ +N I + A DKD +I Sbjct: 289 AIKHREQAKNKITYYEKTINLQKLEILDGTVHDNMPAFQISFETNTLMAYTDKDGNVIEQ 348 Query: 199 D----PEIFGKVIDIWTFVRNIPPSNP--NWVLISTKLGE 232 + P+ K +W+ R+ P W ++ + + Sbjct: 349 EGYPKPDEVYKSYHVWSVCRDPMEPEPSAAWRVLECETMD 388 >gi|167718139|ref|ZP_02401375.1| hypothetical protein BpseD_03908 [Burkholderia pseudomallei DM98] Length = 129 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 42/143 (29%), Gaps = 17/143 (11%) Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148 +V FD + FL A+ + + ++ EG + I + + F + Sbjct: 1 AAAPAVPAGFDTEAFLRNAKVYFVRLQAAWDEGNLADIREFTTPEM---FAEVKIDLDGR 57 Query: 149 EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208 + V D +++ ++R L+ + + Sbjct: 58 GAGANQTDVVQLDAELLAVEDRGGEHLASVRFH-----------GLIRETQGAAAEPFDE 106 Query: 209 IWTFVRNIPPSNPNWVLISTKLG 231 +W + + W+L + Sbjct: 107 VWNLSK---SGSQGWLLAGIQQA 126 >gi|148690046|gb|EDL21993.1| translocase of inner mitochondrial membrane 44, isoform CRA_b [Mus musculus] Length = 222 Score = 65.7 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 21/179 (11%), Positives = 55/179 (30%), Gaps = 33/179 (18%) Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113 + ++ D + + T +++V+ +I+ V FD FL++ Sbjct: 67 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQCETDIIPN 126 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 I+++ G++ ++ + + E Sbjct: 127 ILEAMISGELDILKDWCYEAL------------------------------AMGKMMEQG 156 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230 + + Q + + + DP+ +++ +W R+ NP W L+ Sbjct: 157 PVLIVTFQAQVVMVIKNSKGEVYDGDPDKVQRMLYVWALCRDQEELNPYAAWRLLDISA 215 >gi|172087484|ref|XP_001913284.1| import inner membrane translocase subunit TIM44-like protein [Oikopleura dioica] gi|42601412|gb|AAS21436.1| import inner membrane translocase subunit TIM44-like protein [Oikopleura dioica] Length = 388 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 7/160 (4%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138 N ++ I V FD + F+ I+++ V IE Q F Sbjct: 224 TSNSYNDTIKAIRQVDKKFDQEAFVQFLESEMIPIILEAKAINDVAVIEDWCLDAPAQRF 283 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198 + N+ + + ++I++ ++ +N I + A DKD +I Sbjct: 284 AIKHREQAKNKITYYEKTINLQKLEILDGTVHDNMPAFQISFETNTLMAYTDKDGNVIEQ 343 Query: 199 D----PEIFGKVIDIWTFVRNIPPSNP--NWVLISTKLGE 232 + P+ K +W+ R+ P W ++ + + Sbjct: 344 EGYPKPDEVYKSYHVWSVCRDPMEPEPSAAWRVLECETMD 383 >gi|120612288|ref|YP_971966.1| import inner membrane translocase subunit Tim44 [Acidovorax citrulli AAC00-1] gi|120590752|gb|ABM34192.1| import inner membrane translocase, subunit Tim44 [Acidovorax citrulli AAC00-1] Length = 343 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 16/202 (7%), Positives = 56/202 (27%), Gaps = 16/202 (7%) Query: 35 TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMR--DIV 92 G+ P +Y + S G + + Sbjct: 154 AGSASPSDAAVPRQYSPQNVGNDASARPFERSGMAFDASRTGGAGSGVVIGSGLSGSQNW 213 Query: 93 SVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNE--K 150 + DFD + FL+ A+ ++ + ++ + + ++ + + L R++ Sbjct: 214 GIPADFDTQGFLDAAKRNFVTLQAAWDRSDIATLRSMMTDSMVDEIRAQLGEREALRGAS 273 Query: 151 NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210 + V + + +++ + ++ ++ ++W Sbjct: 274 QPNHTDVVMLEAQLLGIEDLGDGYMASVEF-----------SGMIREELSAGPSPFREVW 322 Query: 211 TFVRNIPPSNPNWVLISTKLGE 232 + W++ + + Sbjct: 323 NMTKP-KSGTSGWLVAGVQALQ 343 >gi|46205477|ref|ZP_00048494.2| hypothetical protein Magn03001526 [Magnetospirillum magnetotacticum MS-1] Length = 147 Score = 65.3 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 11/154 (7%) Query: 79 PIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138 P+G + R D + F S I ++ V ++ +L + F Sbjct: 3 PVGGGYSGGARPQPIQIQPDDFQAF----ERSLTEIQGAYGREDVASLRRLATPEMVGYF 58 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK-DNLLIS 197 + L + + S V + + A E + T+ + +++ N + Sbjct: 59 EEELRANAARGVVNRISDVKLLQGDLSEAWREGPVEFATVAMRFSLRDEVFERASNRHVE 118 Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + P+ + WTFVR W+L + + G Sbjct: 119 NGPQEAKEF---WTFVR---EPGGPWLLSAIQQG 146 >gi|242018556|ref|XP_002429740.1| mitochondrial 50S ribosomal protein L45, putative [Pediculus humanus corporis] gi|212514752|gb|EEB17002.1| mitochondrial 50S ribosomal protein L45, putative [Pediculus humanus corporis] Length = 306 Score = 65.0 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 8/207 (3%) Query: 26 QLR--GVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83 +L+ GVL + +P + + V G K I + Sbjct: 42 RLKELGVLPPRFWKRRPMTITTTSTIVNPYEPPPG-DGKSSIIPKVGSTCIVDKVKEQKD 100 Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 R I + ++F+ K F EA + Y + + + V + + Sbjct: 101 YMLAKRQITNYDSNFNTKVFPQEAHDIYVKAHTILMKNDPEELSEYVTESAIMEMMSGIK 160 Query: 144 TRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFIS---ASYDKDNLLISS 198 + K ++S + +T+R + S A YD+ L Sbjct: 161 NKTLRWKFIESLEPPKIVQMSVAPVIQESNLFGQVTVRFHTKQASTMLAIYDRFGRLFYG 220 Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVL 225 I V++ F ++I W L Sbjct: 221 SETIAKDVLEYVVFEKHIVNEYGTWRL 247 >gi|326318355|ref|YP_004236027.1| import inner membrane translocase subunit Tim44 [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375191|gb|ADX47460.1| import inner membrane translocase subunit Tim44 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 341 Score = 65.0 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 17/200 (8%), Positives = 54/200 (27%), Gaps = 14/200 (7%) Query: 35 TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSV 94 G+ P +Y + S + V Sbjct: 154 AGSASPSDAAVPRQYSPQNVGNDASARPFERSGMAFDASRAAGSGVVIGSALSGSQNWGV 213 Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNE--KNV 152 DFD + FL+ A+ ++ + ++ + + ++ + + L R+S Sbjct: 214 PADFDTQGFLDAAKRNFVTLQAAWDRSDIATLRSMMTDSMVDEIRSQLGERESLRGASQP 273 Query: 153 KSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTF 212 + V + + +++ + ++ ++ ++W Sbjct: 274 NHTDVVMLEAQLLGIEDLGDGYMASVEF-----------SGMIREEPSAGPSPFREVWNM 322 Query: 213 VRNIPPSNPNWVLISTKLGE 232 + W++ + + Sbjct: 323 TKP-KSGTSGWLVAGVQALQ 341 >gi|325690393|gb|EGD32397.1| hypothetical protein HMPREF9382_1351 [Streptococcus sanguinis SK115] Length = 237 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 48/133 (36%), Gaps = 2/133 (1%) Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 + +R++ + FD + FL++A+ Y + ++ E ++ L +Y+ L Sbjct: 42 NQEAIRELKRLDPYFDEESFLSQAKAVYLHLQSAWTEKDWASVRNLESPSLYEQHRTQLQ 101 Query: 144 TRKSNEKNVKSSLVGIDDMKIINASIEENTV-YITIRIVGQFISASYD-KDNLLISSDPE 201 + V ++D KI + + + + D + +I DP Sbjct: 102 EHIRAKTTNVLERVCVEDSKIKDFYPNSQGHDRLEVILSSTMRDYIKDDETGRIIEGDPT 161 Query: 202 IFGKVIDIWTFVR 214 + F+R Sbjct: 162 KELFTVYRMNFIR 174 >gi|241766060|ref|ZP_04763976.1| import inner membrane translocase subunit Tim44 [Acidovorax delafieldii 2AN] gi|241363941|gb|EER59229.1| import inner membrane translocase subunit Tim44 [Acidovorax delafieldii 2AN] Length = 235 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 12/189 (6%), Positives = 57/189 (30%), Gaps = 15/189 (7%) Query: 47 GKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMR--DIVSVYTDFDPKDFL 104 + + + D+ + G + + + FD + FL Sbjct: 59 PRQYSPDKVGNDASARPWERSSMAFDAARQPQGSGVVIGSGLAGSQNWGIPAGFDAEGFL 118 Query: 105 NEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK-SNEKNVKSSLVGIDDMK 163 + A+ ++ + ++ + + ++ + + L+ R+ + V + + + Sbjct: 119 SAAKRNFVTLQAAWDRSDIATLRSMMTDSMLDEIRTQLTERESHRGDQPNHTDVVMIEAQ 178 Query: 164 IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223 ++ ++ ++ ++ ++W + ++ W Sbjct: 179 LLGIEELDDGYMASVEF-----------SGMIREELSAGPSPFREVWNMTKPKTGTSG-W 226 Query: 224 VLISTKLGE 232 ++ + + Sbjct: 227 LVAGVQALQ 235 >gi|307184938|gb|EFN71203.1| Probable 39S ribosomal protein L45, mitochondrial [Camponotus floridanus] Length = 201 Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 2/125 (1%) Query: 103 FLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--ID 160 FL EA Y+ ++ K + K V Y +L + + K ++S + Sbjct: 20 FLEEATEIYQKAHEALAAKKKGMLIKYVTESAYPKMIHNLMDKTIHWKFLESLEPARVVH 79 Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN 220 + E +T+R Q I A YD+ LI + V++ F +++ Sbjct: 80 ARTTDVITKENVFAQLTVRFHTQQILAVYDRFGRLIQGSEILRKDVLEYIVFEKHLANEY 139 Query: 221 PNWVL 225 W + Sbjct: 140 GAWRI 144 >gi|198413804|ref|XP_002125945.1| PREDICTED: similar to Mitochondrial ribosomal protein L45 [Ciona intestinalis] Length = 400 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 15/150 (10%) Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV---------HAIEKLVDS----RVY 135 R + +F K F EA++ Y + ++ LV + Sbjct: 132 RIVKKRVDNFHRKRFPAEAQDIYIKAHNLLNTPNWTIVNQEDTEERLQNLVTEHAYTDMV 191 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + + K NE +V I +I + +T+R + A YD+ L Sbjct: 192 KGLDSKTVIWKWNESLEPPRVVRIRASPMI--TNNNYYGQVTVRFHSKQTLAIYDRFGRL 249 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 + P+ V++ F R+I W + Sbjct: 250 MYGSPDEARNVLEFVVFERHISHPYGCWRI 279 >gi|124267379|ref|YP_001021383.1| hypothetical protein Mpe_A2192 [Methylibium petroleiphilum PM1] gi|124260154|gb|ABM95148.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 311 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/203 (9%), Positives = 56/203 (27%), Gaps = 17/203 (8%) Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87 R V+ + G + + + + + Sbjct: 124 RFVMRRMAG--GSAGPRPALAGAGAGGHGGATQPAWPAPAEPLQRRVEPSPVAAVPPIAM 181 Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 + ++ DFD F A+ + + + ++ + + F + Sbjct: 182 VSTGGALPADFDAAGFERLAKQIFIRLQAANDTADLNDLRAFTTPEL---FASLRLDLQE 238 Query: 148 NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 + + + V D ++++ + E+ +++R L+ Sbjct: 239 RGETSQQTDVLKIDAEVLDLAREDGRQVVSVRFH-----------GLVRELSDAAATDFD 287 Query: 208 DIWTFVRNIPPSNPNWVLISTKL 230 ++W V+ S P W + + Sbjct: 288 EVWHLVKPDDDSRP-WAIAGIEQ 309 >gi|171059204|ref|YP_001791553.1| import inner membrane translocase subunit Tim44 [Leptothrix cholodnii SP-6] gi|170776649|gb|ACB34788.1| import inner membrane translocase subunit Tim44 [Leptothrix cholodnii SP-6] Length = 333 Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/184 (9%), Positives = 55/184 (29%), Gaps = 15/184 (8%) Query: 47 GKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNE 106 + + G G+ ++ + P + ++ DFD F Sbjct: 163 PAAMQRSNAQEGSAAASFGQAGNSAGFNSASAPAFEPIGAAPTAAANLPADFDQAGFERI 222 Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN 166 A+ + + + G ++ + + F + +++ V ++++ Sbjct: 223 AKMIFIRMQAANDSGDLNDLRSFTTPEM---FAHIRLELQERGNAPQTTDVVDVAAEVLD 279 Query: 167 ASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226 + + + +++R + + +IW V+ + NW + Sbjct: 280 LTRDTDRDIVSVRYH-----------GQIREAAGAPVTSFDEIWHLVQP-RDGSRNWAIS 327 Query: 227 STKL 230 + Sbjct: 328 GIQQ 331 >gi|221056238|ref|XP_002259257.1| Mitochondrial import inner membrane translocase [Plasmodium knowlesi strain H] gi|193809328|emb|CAQ40030.1| Mitochondrial import inner membrane translocase,putative [Plasmodium knowlesi strain H] Length = 467 Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 58/146 (39%), Gaps = 2/146 (1%) Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLV 130 + I T L +R++ +F + + + IV+S+ G + Sbjct: 296 NPILGKLFGETELAAALREMKMYDQNFKLSELMYLFEFVISKHIVESYLIGDEETLRVHC 355 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYITIRIVGQFISASY 189 + N S++ RK + + ++++ + ++ A +EE++ + Q I+ Sbjct: 356 GQSAFNSLNASINERKKKKVYLDTNVLIYKNHELKGAQRMEESSPWFIFTFHTQQINCLK 415 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRN 215 + ++ +I + + +V+ ++ Sbjct: 416 NANDEIIEGNIDDIREVVYTIALSKH 441 >gi|296533885|ref|ZP_06896415.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957] gi|296265797|gb|EFH11892.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957] Length = 47 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 6 MDSGD-FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF 51 M G ++LFA + F+ L+LR VLG++ G E+P + Sbjct: 1 MSGGFPVDLILFAMVAAFLVLRLRSVLGRRQGFERPPQERPAPGQAR 47 >gi|167737169|ref|ZP_02409943.1| hypothetical protein Bpse14_03836 [Burkholderia pseudomallei 14] Length = 135 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 40/135 (29%), Gaps = 17/135 (12%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD + FL A+ + + ++ EG + I + + F + + Sbjct: 15 GFDTEAFLRNAKVYFVRLQAAWDEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTD 71 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 V D +++ ++R L+ + ++W + Sbjct: 72 VVQLDAELLAVEDRGGEHLASVRFH-----------GLIRETQGAAAEPFDEVWNLSK-- 118 Query: 217 PPSNPNWVLISTKLG 231 + W+L + Sbjct: 119 -SGSQGWLLAGIQQA 132 >gi|262283507|ref|ZP_06061273.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|262260998|gb|EEY79698.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 310 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 42/119 (35%), Gaps = 2/119 (1%) Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145 + +R + +FD + FL++ + Y + ++ E ++ L +Y + L Sbjct: 117 EAIRQLKQQDPNFDEERFLSQVKVIYLRLQSAWTEKDWASVRGLESPSLYDQHSTQLQEH 176 Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTV-YITIRIVGQFISASYD-KDNLLISSDPEI 202 + V +++ KI + + + + D + +I DP Sbjct: 177 IRAKTTNVLERVRVENSKIKDFYPNPQGHDRLEVILSSTMRDYIRDDETGRIIEGDPTK 235 >gi|221103937|ref|XP_002159080.1| PREDICTED: similar to mitochondrial ribosomal protein L45, partial [Hydra magnipapillata] gi|221118615|ref|XP_002159504.1| PREDICTED: similar to mitochondrial ribosomal protein L45, partial [Hydra magnipapillata] Length = 99 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 1/94 (1%) Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 + F + + + + + + S + +T+R+ + I D+ N Sbjct: 2 LQNQFTNPANKPYWR-FVKEVEKPRVINAALSAVSENDLYAQVTVRLHTEQILTIRDRFN 60 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 +++ DP+ VID F R++P W + Sbjct: 61 RIVTGDPKTPRSVIDYVVFERHLPDPYGKWRICG 94 >gi|167892865|ref|ZP_02480267.1| hypothetical protein Bpse7_03801 [Burkholderia pseudomallei 7894] Length = 133 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 40/135 (29%), Gaps = 17/135 (12%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD + FL A+ + + ++ EG + I + + F + + Sbjct: 13 GFDTEAFLRNAKVYFVRLQAAWDEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTD 69 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 V D +++ ++R L+ + ++W + Sbjct: 70 VVQLDAELLAVEDRGGEHLASVRFH-----------GLIRETQGAAAEPFDEVWNLSK-- 116 Query: 217 PPSNPNWVLISTKLG 231 + W+L + Sbjct: 117 -SGSQGWLLAGIQQA 130 >gi|167814302|ref|ZP_02445982.1| hypothetical protein Bpse9_04118 [Burkholderia pseudomallei 91] Length = 141 Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 40/135 (29%), Gaps = 17/135 (12%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD + FL A+ + + ++ EG + I + + F + + Sbjct: 21 GFDTEAFLRNAKVYFVRLQAAWDEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTD 77 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 V D +++ ++R L+ + ++W + Sbjct: 78 VVQLDAELLAVEDRGGEHLASVRFH-----------GLIRETQGAAAEPFDEVWNLSK-- 124 Query: 217 PPSNPNWVLISTKLG 231 + W+L + Sbjct: 125 -SGSQGWLLAGIQQA 138 >gi|221102145|ref|XP_002170372.1| PREDICTED: similar to mitochondrial ribosomal protein L45, partial [Hydra magnipapillata] Length = 98 Score = 63.4 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 32/77 (41%) Query: 151 NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210 + + + + S + +T+R+ + I D+ N +++ DP+ VID Sbjct: 17 VKEVEKPRVINAALSAVSENDLYAQVTVRLHTEQILTIRDRFNRIVTGDPKTPRSVIDYV 76 Query: 211 TFVRNIPPSNPNWVLIS 227 F R++P W + Sbjct: 77 VFERHLPDPYGKWRICG 93 >gi|121593290|ref|YP_985186.1| import inner membrane translocase subunit Tim44 [Acidovorax sp. JS42] gi|120605370|gb|ABM41110.1| import inner membrane translocase, subunit Tim44 [Acidovorax sp. JS42] Length = 335 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/200 (8%), Positives = 57/200 (28%), Gaps = 14/200 (7%) Query: 35 TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSV 94 G+ +Y K + V Sbjct: 148 AGSAPAADARMPRQYSPDKVGNDASARPWERGGMAFQAPAAAATGGIIGSALSGSQNWGV 207 Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN--EKNV 152 FD + FL+ A+ ++ + ++ V + ++ + + L+ R+S+ ++ Sbjct: 208 PAGFDTEGFLSAAKRNFTTLQAAWDRSDVATLRSMMTDSMVDEIRTQLNERESHRGDQQP 267 Query: 153 KSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTF 212 + V + + +++ + ++ ++ ++W Sbjct: 268 NQTDVIMLEAQLLGIEDLGDGYMASVEF-----------SGMIREEPSAGPSPFREVWNM 316 Query: 213 VRNIPPSNPNWVLISTKLGE 232 + ++ W++ + + Sbjct: 317 TKPKNGASG-WLVAGVQALQ 335 >gi|322390169|ref|ZP_08063701.1| hypothetical protein HMPREF8577_1171 [Streptococcus parasanguinis ATCC 903] gi|321143129|gb|EFX38575.1| hypothetical protein HMPREF8577_1171 [Streptococcus parasanguinis ATCC 903] Length = 327 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 50/169 (29%), Gaps = 2/169 (1%) Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112 ++ + + +R I + FD FL++ + Y Sbjct: 101 AKEANDSDESFSSNSGPKRTTEERAGRPIENNYEAIRRIRKLDPMFDEDRFLSQVKLVYL 160 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172 + ++ E +++ L + +Y+ L + V ++D KI + Sbjct: 161 QLQSAWTEKDWNSVRNLESTSLYEQHLTQLQEHIRAKTTNVLERVRVEDSKIKDFIENPE 220 Query: 173 TV-YITIRIVGQFISASY-DKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 I + + D+ +I DP + F+R Sbjct: 221 GNDRIEVILSSTMRDYIRNDETGRVIEGDPTKDLFTVYRMVFLREHGAQ 269 >gi|317404450|gb|EFV84863.1| hypothetical protein HMPREF0005_02511 [Achromobacter xylosoxidans C54] Length = 178 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 20/187 (10%), Positives = 53/187 (28%), Gaps = 17/187 (9%) Query: 44 FFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDF 103 + ++ L + P + V DFD +F Sbjct: 2 GANNAPGQPQQQPMWREALKPTAPAAAPVAAAAAAPAAVLPKAGDDNNWFVPGDFDTPNF 61 Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163 L +A+ + I + G + + + + L+ R + V + + + Sbjct: 62 LKQAKEQFVRIQAVWDSGSTDRLRDYLTDDLITELKPQLAER---GAAPNKTEVVLLNAE 118 Query: 164 IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223 ++ + ++R +L + + ++W + +N W Sbjct: 119 LLGIETVSDGHLASVRF-----------SGMLRETPGAEAFRFEEVWNLFKP---ANGGW 164 Query: 224 VLISTKL 230 +L + Sbjct: 165 LLAGIQQ 171 >gi|222110012|ref|YP_002552276.1| import inner membrane translocase subunit tim44 [Acidovorax ebreus TPSY] gi|221729456|gb|ACM32276.1| import inner membrane translocase subunit Tim44 [Acidovorax ebreus TPSY] Length = 335 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 16/200 (8%), Positives = 57/200 (28%), Gaps = 14/200 (7%) Query: 35 TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSV 94 G+ +Y K + V Sbjct: 148 AGSAPAADARMPRQYSPDKVGNDASARPWERGGMAFQAPAAAATGGIIGSALSGSQNWGV 207 Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN--EKNV 152 FD + FL+ A+ ++ + ++ V + ++ + + L+ R+S+ ++ Sbjct: 208 PAGFDTEGFLSAAKRNFTTLQAAWDRSDVATLRSMMTDSMVDEIRTQLNERESHRGDQQP 267 Query: 153 KSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTF 212 + V + + +++ + ++ ++ ++W Sbjct: 268 NQTDVIMLEAQLLGIEDLGDGYMASVEF-----------SGMIREEPSAGPSPFREVWNM 316 Query: 213 VRNIPPSNPNWVLISTKLGE 232 + ++ W++ + + Sbjct: 317 TKPKNGASG-WLVAGVQALQ 335 >gi|322387219|ref|ZP_08060829.1| NinF protein [Streptococcus infantis ATCC 700779] gi|321141748|gb|EFX37243.1| NinF protein [Streptococcus infantis ATCC 700779] Length = 246 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 24/214 (11%), Positives = 63/214 (29%), Gaps = 25/214 (11%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 IL+ + F+ L L +++ + + Sbjct: 1 MNILIMFGVGGFILFMLIKYL-----------------------NDQNSSSGKSYGSSTS 37 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + + +FD F + A+ Y + ++ + + + L Sbjct: 38 YQPQPTSHRRVENNIQAIDRLRYYDPNFDASAFTSWAKEVYIQLQAAWTKKDWNLVRSLE 97 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS--AS 188 +Y + L ++ V +++++I + + + + I+ + Sbjct: 98 SVSLYTQHSAQLEDYIQSQTTNVLERVYVENVRIKDFNSNPDGNDTLVVILSSTLRDYVI 157 Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222 DK +I DP+ + F+R N Sbjct: 158 DDKTRKVIEGDPQQDLFTVYQMNFIRKHGSQTEN 191 >gi|307543929|ref|YP_003896408.1| hypothetical protein HELO_1340 [Halomonas elongata DSM 2581] gi|307215953|emb|CBV41223.1| hypothetical protein HELO_1340 [Halomonas elongata DSM 2581] Length = 272 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 20/172 (11%), Positives = 47/172 (27%), Gaps = 18/172 (10%) Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + G + + I FD + FL A+ + + ++ Sbjct: 115 AMAGANGTTSQASREADAQAFQSSASLGGTTHIGDEPAWFDRERFLGGAKEHFMTLQRAW 174 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 I+ V +Y +N + L+ ++ + + T+ Sbjct: 175 DNNDFTLIQDYVTPELYNLLRQEREQHPANNRTEIVRLI----AELGSVRETDQQAEATV 230 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G D++ + + W VR++ P W + + Sbjct: 231 LFHG-----ILDENG--------AQNEFNETWHLVRDLRDGAP-WYVQGIEQ 268 >gi|196000530|ref|XP_002110133.1| hypothetical protein TRIADDRAFT_53791 [Trichoplax adhaerens] gi|190588257|gb|EDV28299.1| hypothetical protein TRIADDRAFT_53791 [Trichoplax adhaerens] Length = 304 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 50/144 (34%), Gaps = 6/144 (4%) Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD----SRVYQDFNDSLS 143 + I F+ DF +A Y A ++ + L + F + Sbjct: 136 VAVIKRKAKPFNISDFKLQAEKIYIATNEALASQDKTRLHTLTTEIAFHELRSAFKNRQI 195 Query: 144 TRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203 + ++ I + + + IT+++ + I A YD+ N L++ + + Sbjct: 196 KWQCLGTASAPRIINIRVIPLED--KTNTFAQITVKLQLKQILAVYDQYNRLLTGSEDRY 253 Query: 204 GKVIDIWTFVRNIPPSNPNWVLIS 227 + + F R++ N W + Sbjct: 254 KQPTEYVVFERHLAKPNSPWRICG 277 >gi|156098709|ref|XP_001615370.1| mitochondrial import inner membrane translocase [Plasmodium vivax SaI-1] gi|148804244|gb|EDL45643.1| mitochondrial import inner membrane translocase, putative [Plasmodium vivax] Length = 461 Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 57/146 (39%), Gaps = 2/146 (1%) Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLV 130 + I T L +R++ +F + + + IV+S+ G + Sbjct: 290 NPILGKLFGETELAAALREMKMQDKNFKLCELMYLFEFVISKHIVESYLIGDEETLRLHC 349 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYITIRIVGQFISASY 189 + N S++ RK + + ++++ + ++ A +EE++ + Q I+ Sbjct: 350 GQSAFNSLNASINERKKKKVYLDTNVLIYKNHELKGAQRMEESSPWFIFTFHTQQINCLK 409 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRN 215 + ++ ++ + +V+ ++ Sbjct: 410 NANDEIVEGHIDDIREVVYTIALSKH 435 >gi|319942109|ref|ZP_08016427.1| hypothetical protein HMPREF9464_01646 [Sutterella wadsworthensis 3_1_45B] gi|319804319|gb|EFW01203.1| hypothetical protein HMPREF9464_01646 [Sutterella wadsworthensis 3_1_45B] Length = 330 Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 80/241 (33%), Gaps = 32/241 (13%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVL-GKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 +G ++ + VF +R L ++ +G E+ + Sbjct: 102 GAGISSLITGLLLAVVVFFVVRMFLMRRRPQTAGGPAGSNPFDQQRQTDMEQTMQRESNS 161 Query: 66 KKKDNLDSINELFPIGT--------------RLNKVMRDIVSVYTDFDPKDFLNEARNSY 111 + N G+ + + DFD + FL AR++Y Sbjct: 162 APQQNWQQSQGGVRSGSLMDQLMGGAASESSSTAESSGLVDVTPVDFDREGFLKTARDNY 221 Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171 + ++ G V I + ++ L RK V + V + +++ + ++ Sbjct: 222 LKLQQAWDTGNVIEISDFTSNEIFTAVTHQLRERKGE---VYHTEVKSLENELLGIAQQD 278 Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 T Y ++R G ++S +PE +IW + + + W+L + + Sbjct: 279 GTYYASVRFFGSL----------VVSGEPET---FDEIWVLEKPVTGTGG-WLLCAIRQN 324 Query: 232 E 232 E Sbjct: 325 E 325 >gi|239906247|ref|YP_002952987.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1] gi|239796112|dbj|BAH75101.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1] Length = 280 Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 22/219 (10%), Positives = 56/219 (25%), Gaps = 25/219 (11%) Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFFSG-------KYVFSKRDERGIITLGKGKKKDNLD 72 FV ++ K G++ ++ RG + ++ Sbjct: 76 AMFVLFRVLSGRRNKNGDQTQAPPRSDDQDDRDDDAPPQNQPPRRGPDMYTNAQATWDML 135 Query: 73 SINELFP--IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + P + + ++FL A+ +Y I S + V Sbjct: 136 RSPDKRPGTPARADGQAAPPAPANAPAGSDEEFLAGAKMAYSRIAASLGGRDFGDLASFV 195 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 + ++L + + + + + + + Sbjct: 196 SPAYLAELQNTLPQTPAGRP-----DILLINAALAERRETPGRTVMVVDY-----DVLAR 245 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 + + + WTF R+ NW+L + + Sbjct: 246 QPGA------TENTTLRERWTFSRDNAAPGANWLLDAMQ 278 >gi|257095873|ref|YP_003169514.1| import inner membrane translocase subunit Tim44 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048397|gb|ACV37585.1| import inner membrane translocase subunit Tim44 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 303 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 68/227 (29%), Gaps = 21/227 (9%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 + +F+++ + V +L L ++ + + S ++ G+ Sbjct: 94 MGEGLANFVMIALLVVAAVVVFKL---LFRR---KAAPASASSEAMQYAGVGGPGMAPPP 147 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123 + + L I +V DFD FL A+ ++ + + G + Sbjct: 148 FDPRPASAGLAAHGDDSPAALQPSGAPIANVPADFDSDGFLRIAKLNFIRLQAANDAGNL 207 Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183 I + V ++ + R + + V + +++ E ++R Sbjct: 208 DDIREFVSPELFAEIRMQFEERAKA---PQQTDVVTLNAQLLEVVTEVTRHIASVRF--- 261 Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ ++W + + WV+ + Sbjct: 262 --------SGMIREEAGAAAAPFDEVWNLSKPV-EGGKGWVVAGIQQ 299 >gi|70943748|ref|XP_741884.1| mitochondrial import inner membrane translocase, [Plasmodium chabaudi chabaudi] gi|56520543|emb|CAH80928.1| mitochondrial import inner membrane translocase, putative [Plasmodium chabaudi chabaudi] Length = 367 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 55/138 (39%), Gaps = 2/138 (1%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138 T L +R + +F + + + IV+S+ G + + Sbjct: 204 GETELAAALRVMKMEDKNFKLSELMYLFEFVISKHIVESYLIGDEETLRLHCGQAAFNSL 263 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYITIRIVGQFISASYDKDNLLIS 197 N S++ RK + + ++++ D ++ A +EE++ + Q I+ +K++ ++ Sbjct: 264 NSSINERKKKKLFLDTNVLIYKDHELKGAQRMEESSPWFIFTFHTQQINCLKNKNDEIVE 323 Query: 198 SDPEIFGKVIDIWTFVRN 215 + +V+ ++ Sbjct: 324 GKIDDIREVVYTMALSKH 341 >gi|256828118|ref|YP_003156846.1| import inner membrane translocase subunit Tim44 [Desulfomicrobium baculatum DSM 4028] gi|256577294|gb|ACU88430.1| import inner membrane translocase subunit Tim44 [Desulfomicrobium baculatum DSM 4028] Length = 283 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 20/180 (11%), Positives = 51/180 (28%), Gaps = 16/180 (8%) Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 R + G + + + + T N FD ++FL+ A+ +Y Sbjct: 118 RSRQPAAQTAGGPSQTHDMNRGAWDNLRTAQNHTSTSTPEYPAGFDAREFLDGAKAAYTR 177 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ + + + + V+ + + + + + ++ N Sbjct: 178 LQAAWDARDLDDLRQFTSTEVFAEIQSQAEADPNPG----KTEILFLEASLLEVKAVGNQ 233 Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGK-VIDIWTFVRNIPPSNPNWVLISTKLGE 232 T+ + V + W F R +WV+ + E Sbjct: 234 TIATVLFDTMLR-----------EDSTSAPAEQVREAWHFSRYETGGAKHWVVEGIQQLE 282 >gi|258597316|ref|XP_001347936.2| mitochondrial inner membrane translocase subunit TIM44, putative [Plasmodium falciparum 3D7] gi|254832659|gb|AAN35849.2| mitochondrial inner membrane translocase subunit TIM44, putative [Plasmodium falciparum 3D7] Length = 470 Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 60/146 (41%), Gaps = 2/146 (1%) Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLV 130 + I T L +R++ + +F + + + IV+S+ G + Sbjct: 299 NPILGKLFGETELAAALREMKMIDKNFKLSELMYLFEYVISKHIVESYLIGDEETLRLHC 358 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYITIRIVGQFISASY 189 S + N S++ RK + + ++++ + ++ A +EE++ + Q I+ Sbjct: 359 GSSAFNSLNASITERKKKKVFLDTNVLIYKNHELKGAQRMEESSPWFIFTFHTQQINCLK 418 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRN 215 +K++ +I + +V+ ++ Sbjct: 419 NKNDEIIEGKIDDIREVVYTIALSKH 444 >gi|224823518|ref|ZP_03696627.1| conserved hypothetical protein [Lutiella nitroferrum 2002] gi|224603973|gb|EEG10147.1| conserved hypothetical protein [Lutiella nitroferrum 2002] Length = 302 Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 16/194 (8%), Positives = 52/194 (26%), Gaps = 19/194 (9%) Query: 37 NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT 96 + + + + + S P + + Sbjct: 127 FRRKAGNPAGQLPQAAGVPNGMAQEAARFEPIPKIGSGFGTAPSYGGAPMAASSLARLPD 186 Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 + +FL +A+ ++ + + I K + +++ + + + Sbjct: 187 GTETPNFLRQAKATFLHLQSLNTPDSLEEIRKYLTPDLFEALRADI-----AGNDDVADF 241 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 +D ++I A E ++R + + + W +V++ Sbjct: 242 PQLDC-QLIEAVEEGGRYIASVRF-----------SGSVSETVNAAAVPFGETWHYVKD- 288 Query: 217 PPSNPNWVLISTKL 230 + W+L + Sbjct: 289 -KNGSRWLLAGIQQ 301 >gi|167749610|ref|ZP_02421737.1| hypothetical protein EUBSIR_00568 [Eubacterium siraeum DSM 15702] gi|167657363|gb|EDS01493.1| hypothetical protein EUBSIR_00568 [Eubacterium siraeum DSM 15702] Length = 321 Score = 61.9 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 54/158 (34%), Gaps = 3/158 (1%) Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 + G + +++ N + P T + + I +F D + + Y I +++ + Sbjct: 102 SGGGTTRPSSMNGANVVLPNRTEQIEGI--IKQKDPNFSASDLITFTKQVYIDIENAWCK 159 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 + + ++ +Y + + + ID + + + Y+T + Sbjct: 160 RDMTPVRPVMHENLYNTTCKQVQAKIEQGVVYHYESIAIDTAYLTSYERDSQFEYVTAYL 219 Query: 181 VGQFISASYD-KDNLLISSDPEIFGKVIDIWTFVRNIP 217 + I D K +I D FVR++ Sbjct: 220 TSRMIDYQVDEKTGKIIRGDKTTRWVQKYKMKFVRSLG 257 >gi|167835465|ref|ZP_02462348.1| hypothetical protein Bpse38_03171 [Burkholderia thailandensis MSMB43] Length = 134 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 42/135 (31%), Gaps = 17/135 (12%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 FD + FL A+ + + ++ EG + I + + F + + Sbjct: 14 GFDTEAFLRNAKVYFVRLQAAWDEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTD 70 Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 V D +++ + + ++R L+ + ++W + Sbjct: 71 VVQLDAELLAVEDRGDEHFASVRFH-----------GLIRETQGAAAEPFNEVWNLSK-- 117 Query: 217 PPSNPNWVLISTKLG 231 + W+L + Sbjct: 118 -AGSQGWLLAGIQQV 131 >gi|170746985|ref|YP_001753245.1| import inner membrane translocase subunit Tim44 [Methylobacterium radiotolerans JCM 2831] gi|170653507|gb|ACB22562.1| import inner membrane translocase subunit Tim44 [Methylobacterium radiotolerans JCM 2831] Length = 324 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 53/192 (27%), Gaps = 12/192 (6%) Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF-D 99 F + + + + V D Sbjct: 141 FRRRNEPAGAGAPYARTSLDDQPGARGPMGGAPGGPAAGSMFGGGQRPPQTRPVQIGPAD 200 Query: 100 PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159 + F I D++ + L + F++ L + K S V + Sbjct: 201 YQAF----ERLLGDIQDAYSREDRVTLGNLSTPEMVGYFDEELRGNAARGVVNKISDVKL 256 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPP 218 + A E+ T Y T+ + ++ ++S+D ++WTF+R Sbjct: 257 LQGDLAEAWGEDRTDYATVAMRYALKDVMIERSSGRVVSTDSSEA---TELWTFLRQPGR 313 Query: 219 SNPNWVLISTKL 230 WVL + + Sbjct: 314 G---WVLSAIQQ 322 >gi|146309531|ref|YP_001189996.1| import inner membrane translocase, subunit Tim44 [Pseudomonas mendocina ymp] gi|145577732|gb|ABP87264.1| import inner membrane translocase, subunit Tim44 [Pseudomonas mendocina ymp] Length = 284 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 22/232 (9%), Positives = 67/232 (28%), Gaps = 36/232 (15%) Query: 2 VFIKMDS---GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58 +F+ L+F I F +F L ++ + + + Sbjct: 85 MFMGDGFEGLQIMDFLIFGLIAFLLFRFLAARRAQQQPQAATAGAPYQREMPNASNAPAA 144 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118 + + +++ F+ ++F+ R + ++ + Sbjct: 145 GSNIFGAR------------------LASAAPVINAPAWFNEQNFIAAGREHFMSLQQHW 186 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 ++ I + V ++ + R +S+ + +++ T+ Sbjct: 187 DADEMDKIAEFVTPQLLEFLK---RERAELGDGFQSTYIDELQVQLDGVDDNAEKTIATL 243 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G ++ +D+ +P + W R + P W++ + Sbjct: 244 TFSGVSKTSRFDQ------GEP-----FSESWRLERAQGDNQP-WLIAGIRQ 283 >gi|170591877|ref|XP_001900696.1| Tim44-like domain containing protein [Brugia malayi] gi|158591848|gb|EDP30451.1| Tim44-like domain containing protein [Brugia malayi] Length = 389 Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/180 (11%), Positives = 51/180 (28%), Gaps = 5/180 (2%) Query: 50 VFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN 109 +++ + + ++ + + + + +F K F A Sbjct: 162 PPEFHEKKESLEYALLRAEEGRFTAYQHKYFNRKHGIKRIRKRKGFENFSIKTFPATADE 221 Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDF----NDSLSTRKSNEKNVKSSLVGIDDMKII 165 Y + A++K + + + + + S +V + Sbjct: 222 IYVEAHKALMTRDKIALQKYITETAFGKMWPDVENGSVVWELMKHIELSRVVSVRCADF- 280 Query: 166 NASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 + I +R+ A YD+ LI V++ F +I + W L Sbjct: 281 PHQSGNDIAQIIVRMHTMQKIALYDRFGRLILGTEHEAKPVLEYVVFENHIASFDGVWRL 340 >gi|312089990|ref|XP_003146448.1| hypothetical protein LOAG_10876 [Loa loa] gi|307758388|gb|EFO17622.1| hypothetical protein LOAG_10876 [Loa loa] Length = 403 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 40/98 (40%), Gaps = 3/98 (3%) Query: 133 RVYQDFNDSLSTRKSNEK-NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191 Y + ++ K S ++ ID ++++ + E+ I I ++ + Sbjct: 296 EAYNILSTIVNEYKKVNFNTADSRVIDIDRVEMVTGKMMEHGPVIIITFQAYMVNVVRNM 355 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227 + ++ DP+ +V +W R++ NP W ++ Sbjct: 356 EGKVVEGDPKSPVRVHHVWVMCRDMEEYNPAVAWKVLE 393 >gi|68070005|ref|XP_676914.1| mitochondrial import inner membrane translocase, [Plasmodium berghei strain ANKA] gi|56496822|emb|CAH94869.1| mitochondrial import inner membrane translocase, putative [Plasmodium berghei] Length = 355 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 57/146 (39%), Gaps = 2/146 (1%) Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLV 130 + I T L +R + +F + + + IV+S+ G + Sbjct: 184 NPILGKLFGETELAAALRIMKMDDKNFKLSELMYLFEFVISKHIVESYLIGDEDTLRLHC 243 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYITIRIVGQFISASY 189 + N S++ RK + + ++++ + ++ A +EE++ + Q I+ Sbjct: 244 GEAAFNSLNSSINERKKKKLFLDTNVLIYKNHELKGAQRMEESSPWFIFTFHTQQINCLK 303 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRN 215 +KD+ ++ + +V+ ++ Sbjct: 304 NKDDEIVEGKIDDIREVVYTIALSKH 329 >gi|159483173|ref|XP_001699635.1| hypothetical protein CHLREDRAFT_141592 [Chlamydomonas reinhardtii] gi|158281577|gb|EDP07331.1| predicted protein [Chlamydomonas reinhardtii] Length = 311 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 18/149 (12%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKS-- 154 F ++Y+A+ + G + E V + ++ R + + Sbjct: 160 GFSKSALQQRVLDAYKAVNAALAAGDMALAEPYVTEQTGLRLAGEVARRGRSSVTWRMVR 219 Query: 155 -------SLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 LV + + + T RI + + A YD L++ DP+ +V+ Sbjct: 220 EPKPSDIKLVHGTIVSNPLKQGKLHFAQWTARIPSRQVVAVYDNRGKLLAGDPDKELEVV 279 Query: 208 DIWTFVRNI---------PPSNPNWVLIS 227 D W F R I PS W L+ Sbjct: 280 DHWVFERPILKAWIAPRPGPSGAEWRLVE 308 >gi|291557689|emb|CBL34806.1| Tim44-like domain [Eubacterium siraeum V10Sc8a] Length = 309 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 52/152 (34%), Gaps = 3/152 (1%) Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + +++ N + P T + + I +F D + + Y I +++ + + + Sbjct: 96 RPSSMNGANVVLPNRTEQIEGI--IKQKDPNFSASDLITFTKQVYIDIENAWCKRDMTPV 153 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 ++ +Y + + + ID + + + Y+T + + I Sbjct: 154 RPVMHENLYNTTCKQVQAKIEQGVVYHYESIAIDTAYLTSYERDSQFEYVTAYLTSRMID 213 Query: 187 ASYD-KDNLLISSDPEIFGKVIDIWTFVRNIP 217 D K +I D FVR++ Sbjct: 214 YQVDEKTGKIIRGDKTTRWVQKYKMKFVRSLG 245 >gi|50949925|emb|CAH10507.1| hypothetical protein [Homo sapiens] Length = 90 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 33/87 (37%) Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNL 194 Y + K+ S ++ ID++ + + E + I Q + + Sbjct: 1 YSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGE 60 Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNP 221 ++ DP+ +++ +W R+ NP Sbjct: 61 VVEGDPDKVLRMLYVWALCRDQDELNP 87 >gi|312078188|ref|XP_003141630.1| ribosomal protein L45 [Loa loa] gi|307763207|gb|EFO22441.1| ribosomal protein L45 [Loa loa] Length = 388 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 5/138 (3%) Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDF----NDSLSTRKS 147 + +F K F A Y + A++K + + + + Sbjct: 204 RKGFENFSVKTFPATADEIYIEAHRALMTRDKTALQKYITEAAFGKMWPDVENGSVIWEL 263 Query: 148 NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 + S +V + + I +R+ A YD+ LI + V+ Sbjct: 264 IKHIEPSRVVSVRCADF-PHQSGNDIAQIIVRMYTMQKIALYDRFGRLILGTEQEAKPVL 322 Query: 208 DIWTFVRNIPPSNPNWVL 225 + F +I + W L Sbjct: 323 EYVVFENHIASFDGIWRL 340 >gi|291530805|emb|CBK96390.1| Tim44-like domain [Eubacterium siraeum 70/3] Length = 322 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 52/152 (34%), Gaps = 3/152 (1%) Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + +++ N + P T + + I +F D + + Y I +++ + + + Sbjct: 109 RPSSMNGANVVLPNRTEQIEGI--IKQKDPNFSASDLITFTKQVYIDIENAWCKRDMTPV 166 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186 ++ +Y + + + ID + + + Y+T + + I Sbjct: 167 RPVMHENLYNTTCKQVQAKIEQGVIYHYESIAIDTAYLTSYERDSQFEYVTAYLTSRMID 226 Query: 187 ASYD-KDNLLISSDPEIFGKVIDIWTFVRNIP 217 D K +I D FVR++ Sbjct: 227 YQVDEKTGKIIRGDKTTRWVQKYKMKFVRSLG 258 >gi|82706055|ref|XP_727222.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23482963|gb|EAA18787.1| Drosophila melanogaster CG11779 gene product, putative [Plasmodium yoelii yoelii] Length = 443 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 57/146 (39%), Gaps = 2/146 (1%) Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLV 130 + I T L +R + +F + + + IV+S+ G + Sbjct: 272 NPILGKLFGETELAAALRVMKMDDKNFKLSELMYLFEYVISKHIVESYLIGDEDTLRLHC 331 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYITIRIVGQFISASY 189 + N S++ RK + + ++++ + ++ A +EE++ + Q I+ Sbjct: 332 GEAAFNSLNLSITERKKKKLFLDTNVLIYKNHELKGAQRMEESSPWFIFTFHTQQINCLK 391 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRN 215 +KD+ +I + +V+ ++ Sbjct: 392 NKDDEIIEGKIDDIREVVYTIALSKH 417 >gi|71033659|ref|XP_766471.1| mitochondrial import inner membrane translocase [Theileria parva strain Muguga] gi|68353428|gb|EAN34188.1| mitochondrial import inner membrane translocase, putative [Theileria parva] Length = 381 Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 55/148 (37%), Gaps = 2/148 (1%) Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLV 130 + I T L +R++ + F+ D + + +V+S+ +G A++ Sbjct: 215 NPIISKLFGDTSLASALREMKRLDPSFNLPDLVELVEHVIAPHVVESYLKGDGEALKLHC 274 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI-EENTVYITIRIVGQFISASY 189 + N S+ R + + S++ + ++++ +E ++ Q I+ Sbjct: 275 GEVAFNILNTSIKERNLQKLVLDPSILILKNVELKGGMKVKEGDPWLIFNFTTQQINCLR 334 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIP 217 D + + + +V+ R+ Sbjct: 335 DTKGKVCAGQIDDIREVVYSIAISRHPN 362 >gi|325522769|gb|EGD01254.1| import inner membrane translocase subunit Tim44 [Burkholderia sp. TJI49] Length = 124 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 40/137 (29%), Gaps = 17/137 (12%) Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153 + FD FL A+ + + ++ +G + I + + F + S Sbjct: 1 MPAGFDADAFLRSAKVYFVRLQAAWDQGNLADIREFTTPEM---FAEIKIDLDSRGNEAN 57 Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213 + V D +++ ++R L+ S ++W Sbjct: 58 QTDVVQLDAELVAVEDRGIEQSASVRFH-----------GLIRESANAPAEPFDEVWNLS 106 Query: 214 RNIPPSNPNWVLISTKL 230 + W+L + Sbjct: 107 K---SGGQGWLLAGIQQ 120 >gi|332286636|ref|YP_004418547.1| hypothetical protein PT7_3383 [Pusillimonas sp. T7-7] gi|330430589|gb|AEC21923.1| hypothetical protein PT7_3383 [Pusillimonas sp. T7-7] Length = 314 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 65/228 (28%), Gaps = 29/228 (12%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 F++ S LI L F ++ +LRG G +P G + + + Sbjct: 109 FLEFMSSLVLIGLLVFGVMYLVRRLRG------GAARPAMQQAGGMNRQNAQSQNTW--- 159 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 + + + DFD FL A+ + I + G Sbjct: 160 --QQASPAAAPAASAAAAPVVPAPPVDKSWFIPGDFDTSAFLANAKAQFIEIQAVWDSGD 217 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + + + + + L R + V + + +++ ++R Sbjct: 218 LTRLTDYMTDDLVAEIKPELMARGEGNV----TEVVLLNAELLGIEAVSGGHLASVRY-- 271 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +L + + ++W + N W+L + Sbjct: 272 ---------SGMLREAKDAEAFRFEEVWNLYK---GDNTGWLLAGIQQ 307 >gi|331001471|ref|ZP_08325089.1| Tim44-like domain protein [Parasutterella excrementihominis YIT 11859] gi|329568200|gb|EGG50017.1| Tim44-like domain protein [Parasutterella excrementihominis YIT 11859] Length = 310 Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 20/215 (9%), Positives = 53/215 (24%), Gaps = 18/215 (8%) Query: 17 AFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINE 76 A + F F + P S R E + + + Sbjct: 114 AVVAFRFFAARKSGASAAASAGAPASQPTQDADFGQSRSEAAVREQPAFNPAQAVRPGSA 173 Query: 77 LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136 + DF+ ++FLN + ++ + ++ G + + ++ Sbjct: 174 MDQFSDEPAAASESTYGAPADFNQEEFLNMSTAYFKMLQKAWDSGDMDDLANYTTDDLFI 233 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196 + K + + + + ++ L Sbjct: 234 ELTHKRREIKGANL----TEIVNLNASLAGFETTPTEYVASVLF-----------TGSLK 278 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + ++ +IW V+ W+L + Sbjct: 279 ENGE--PTEIKEIWNLVKPKEGKTG-WLLAGIQQA 310 >gi|268575792|ref|XP_002642876.1| Hypothetical protein CBG15146 [Caenorhabditis briggsae] gi|74784622|sp|Q616T6|RM45_CAEBR RecName: Full=Probable 39S ribosomal protein L45, mitochondrial; Flags: Precursor gi|187027386|emb|CAP33598.1| hypothetical protein CBG_15146 [Caenorhabditis briggsae AF16] Length = 361 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 7/139 (5%) Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151 + FD K F +A + YE + + + + + + Sbjct: 168 KQGFEKFDVKTFCAKAEDIYERAHKAMEARDKKEMYRCITEYAFAKMWPDVENGSVR--F 225 Query: 152 VKSSLVGIDDMKIINASIEEN-----TVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 S+V + + IT+R+ + A YD+ LI + V Sbjct: 226 ELVSIVEPSRVVAVRCFDNPPKSGNDIAQITVRMHTRQKLALYDRFGGLILGSEDEEKDV 285 Query: 207 IDIWTFVRNIPPSNPNWVL 225 ++ F +I + W L Sbjct: 286 VEYVVFENHIAVVDGEWRL 304 >gi|15604299|ref|NP_220815.1| hypothetical protein RP434 [Rickettsia prowazekii str. Madrid E] gi|6226372|sp|O05965|Y434_RICPR RecName: Full=Uncharacterized protein RP434 gi|2073499|emb|CAA72444.1| hypothetical protein [Rickettsia prowazekii] gi|3860991|emb|CAA14891.1| unknown [Rickettsia prowazekii] gi|292572048|gb|ADE29963.1| hypothetical protein rpr22_CDS424 [Rickettsia prowazekii Rp22] Length = 212 Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 84/230 (36%), Gaps = 26/230 (11%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSK------RDERGI 59 M +L+FA I F++ +L LG + E+ + + G+ V +D + + Sbjct: 1 MSPQIIELLIFAIIAFYIINKLITTLGSTSEEEQIKNKSYFGEPVIKDVTYSTVKDHKKV 60 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + + + + I FDP F+N A+ +++ I+++ + Sbjct: 61 ERNVSRTQDIKVFKDIIVENNINAVVDGIEQIHKRLYSFDPVKFINNAKTAFQMIIEAAY 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 + V + +L+D R ++F + + K + N ++I + Sbjct: 121 KKDVKELSELIDKRYLEEFEKIIPSYG------DFFDSSALSAKYSEIYMFGNNIFIKLL 174 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G+ + + + + WTF RN +W L + + Sbjct: 175 FQGKNVV--------------DKIEDLQEEWTFTRNANTKEVDWFLSNIE 210 >gi|303256401|ref|ZP_07342415.1| Tim44 domain protein [Burkholderiales bacterium 1_1_47] gi|302859892|gb|EFL82969.1| Tim44 domain protein [Burkholderiales bacterium 1_1_47] Length = 327 Score = 58.8 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 21/215 (9%), Positives = 54/215 (25%), Gaps = 18/215 (8%) Query: 17 AFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINE 76 A + F F + P S R E + + + Sbjct: 131 AVVAFRFFAARKSGASAAASAGAPASQPTQDADFGQSRSEAAVREQPAFNPAQAVRPGSA 190 Query: 77 LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136 + DF+ ++FLN + ++ + ++ G + + ++ Sbjct: 191 MDQFSDEPAAASESTYGAPADFNQEEFLNMSTAYFKMLQKAWDSGDMDDLANYTTDDLFI 250 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196 + K V + + + + ++ L Sbjct: 251 ELTHKRREIKG----VNLTEIVNLNASLAGFETTPTEYVASVLF-----------TGSLK 295 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + ++ +IW V+ W+L + Sbjct: 296 ENGE--PTEIKEIWNLVKPKEGKTG-WLLAGIQQA 327 >gi|317153060|ref|YP_004121108.1| import inner membrane translocase subunit Tim44 [Desulfovibrio aespoeensis Aspo-2] gi|316943311|gb|ADU62362.1| import inner membrane translocase subunit Tim44 [Desulfovibrio aespoeensis Aspo-2] Length = 258 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 63/218 (28%), Gaps = 27/218 (12%) Query: 19 ITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINE-- 76 + +F+ R + G + + D ++ + Sbjct: 55 VAYFLVRAFR-----RRGGGPGPGTGSGSGDSGQDDGGQDDQAQPPARPTDRHEAARQMW 109 Query: 77 ------LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 P G V + V FD +FL A+ + +G + + + Sbjct: 110 NMLGSKDAPEGGAPQAVRQSPAPVPGGFDEAEFLEGAKLFFSRFQQVSGQGDLDQLRGFL 169 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190 VY+ + ++ + + V + D +++ E +IT+ Q Sbjct: 170 SDDVYE----QALAGLAAQQTIARTEVMLVDARLMERKSEGGRTWITVFYDAQLR----- 220 Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 +S D ++ W F R + W L S Sbjct: 221 ---KGVSGD--QPYQLRAAWEFSRTDAEGSGLWTLESI 253 >gi|19112697|ref|NP_595905.1| TIM23 translocase complex subunit Tim44 [Schizosaccharomyces pombe 972h-] gi|6016371|sp|O60084|TIM44_SCHPO RecName: Full=Mitochondrial import inner membrane translocase subunit tim44; Flags: Precursor gi|3006160|emb|CAA18420.1| TIM23 translocase complex subunit Tim44 [Schizosaccharomyces pombe] Length = 427 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 22/189 (11%), Positives = 57/189 (30%), Gaps = 8/189 (4%) Query: 47 GKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNE 106 + S ++ I D++ + T ++VMR + F+ + FL Sbjct: 229 QELKKSYQESEHPIVSSIRDMADSISGVWSRMFSETEASQVMRRFKEIDPSFNTEHFLQY 288 Query: 107 ARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID--DMK 163 R + +++ +G ++ + + + + + ++ I D+ Sbjct: 289 LREYIVPEVTEAYVKGDKEVLKTWLSEAPFSVYETTTKEYAKHGVVSVGKILDIRGVDIM 348 Query: 164 IINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPP-SNP 221 + + Q + D L++ + + F R NP Sbjct: 349 SQRLLQPNDIPVFIVTFRTQEVHMFKDASSGELVAGKDDRIQQCTYASVFTRVEDELDNP 408 Query: 222 N---WVLIS 227 W ++ Sbjct: 409 ETRGWRIVD 417 >gi|307111739|gb|EFN59973.1| hypothetical protein CHLNCDRAFT_133085 [Chlorella variabilis] Length = 434 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 62/220 (28%), Gaps = 48/220 (21%) Query: 23 VFLQLRGV-LGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIG 81 F ++RG+ LG K S + + D + + Sbjct: 238 FFARMRGLNLGANPVFSKGREAAESIRERWETSDSPLVHRIQDAVDS---------LQTE 288 Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 + +R+I + FD FL R + +V ++ E Sbjct: 289 GEQARALREIRARDPSFDMVAFLRGLRADVQTVVKAYLESDEG----------------- 331 Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201 +L+ ++++++ E + ++ Q I+ + D ++ P+ Sbjct: 332 -------GLVPDPTLLDTSEVELVDIKWLEEEPIVVVQFTCQQINCTRDSFGNVVDGKPD 384 Query: 202 IFGK------VIDIWTF--VRN--IPPSN----PNWVLIS 227 + V W R + P W L Sbjct: 385 EVHRRVAGWWVYYYWALQQERQGYVGADGGYHPPRWQLRE 424 >gi|254571313|ref|XP_002492766.1| Peripheral mitochondrial membrane protein involved in mitochondrial protein import [Pichia pastoris GS115] gi|238032564|emb|CAY70587.1| Peripheral mitochondrial membrane protein involved in mitochondrial protein import [Pichia pastoris GS115] gi|328353226|emb|CCA39624.1| Mitochondrial import inner membrane translocase subunit TIM44 [Pichia pastoris CBS 7435] Length = 408 Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 16/137 (11%), Positives = 46/137 (33%), Gaps = 4/137 (2%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARN-SYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T KV+R + F+ ++F + R +++++ +G ++ + + F+ Sbjct: 245 TESAKVIRMFKEIDPSFNTENFNKQLREFIIPEVLEAYVQGDEAVLKTWLSEAPFNVFHA 304 Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY---ITIRIVGQFISASYDKDNLLIS 197 K ++ I + +++A + + V + K + + Sbjct: 305 QQKQFKEQGLFSDGRILDIRGVDVLSAKVIPGNNSPALVIGARVQEVNVYRKAKTGEIAA 364 Query: 198 SDPEIFGKVIDIWTFVR 214 P+ + R Sbjct: 365 GSPDNINLSTYVMVLTR 381 >gi|224086853|ref|XP_002186709.1| PREDICTED: hypothetical protein, partial [Taeniopygia guttata] Length = 182 Score = 58.4 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 5/125 (4%) Query: 105 NEARNSYEAIVDSFFEG---KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--I 159 + + + + + + LV R Y D + + V+S + Sbjct: 21 DGVKQQMQKLRQTAASQLAFNKQKLHSLVTERCYPDMVRGNRYKTIRWRFVESLEPPRVV 80 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 + +T+R+ + I A YD+ L+ EI V++ F R + Sbjct: 81 HVRCEGILNRGNLYGQVTVRMHSRQILAIYDRFGRLMYGGEEIPKDVLEYVVFERYLVNP 140 Query: 220 NPNWV 224 W Sbjct: 141 YGTWR 145 >gi|270158819|ref|ZP_06187476.1| transmembrane protein [Legionella longbeachae D-4968] gi|289166389|ref|YP_003456527.1| hypothtical protein [Legionella longbeachae NSW150] gi|269990844|gb|EEZ97098.1| transmembrane protein [Legionella longbeachae D-4968] gi|288859562|emb|CBJ13527.1| putative hypothtical protein [Legionella longbeachae NSW150] Length = 273 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 71/225 (31%), Gaps = 46/225 (20%) Query: 8 SGDFLILLFAFITFFV--FLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 SG L+ + FFV F + + G +TG PF+ + S + Sbjct: 88 SGILSWLILGAVLFFVVGFFRRKMQPGYQTGQSSPFNQNPLNNFTQSFSNSSMGGNSNTS 147 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125 F P+ FL EA+ ++ + ++ + + Sbjct: 148 ---------------------------EYPIGFVPETFLREAKVTFNRLQAAYDQKNLQD 180 Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185 + + V F + + V D ++++ S + N+ ++R Sbjct: 181 LSEFTAPEV---FAEIKMQLDERGDAPNKTEVISLDAELLDISKQSNSFIASVRF----- 232 Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + +D E ++ +IW F + P W++ + Sbjct: 233 ------TGSIKEND-EQPSQLDEIWHFRQFPNS--PQWLVGGVQQ 268 >gi|294953191|ref|XP_002787640.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239902664|gb|EER19436.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 794 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 54/161 (33%), Gaps = 6/161 (3%) Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLV 130 + + + T + + +R++ V +F + + I+ + EG V +E Sbjct: 634 NPMVDRIFGETEIAQSIREMKEVDPNFRLSQMAEDIEHVVAPRIIRWYLEGDVERLEAHC 693 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDM---KIINASIEENTVYITIRIVGQFISA 187 + N S+ R + + + ++++ K + E ++ Q I+ Sbjct: 694 GEAAFAAVNASVKARHTQKLTLDTNILQPPMDVELKGAKTASEVDSPCFIFTFSTQQINC 753 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRN--IPPSNPNWVLI 226 ++ ++ + +V ++ W L Sbjct: 754 LRNEFGEVVEGAVDDIRRVFYAMAIQKHPEPESGGCEWSLA 794 >gi|332528579|ref|ZP_08404561.1| import inner membrane translocase, subunit [Hylemonella gracilis ATCC 19624] gi|332041895|gb|EGI78239.1| import inner membrane translocase, subunit [Hylemonella gracilis ATCC 19624] Length = 247 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 12/142 (8%), Positives = 48/142 (33%), Gaps = 13/142 (9%) Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS-NEK 150 SV FD + FL A++++ + ++ + + + ++ + + + L+ R+ + Sbjct: 118 WSVPAGFDVESFLKVAKSNFIHLQAAWDKADMVTLRSMMTDEMLAEISAQLAERERLSSG 177 Query: 151 NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210 + V + +++ ++ ++ ++W Sbjct: 178 EPNLTEVQMLQAQLLGIEDLGGEYMASVEF-----------SGMVREDRHSGPSPFREVW 226 Query: 211 TFVRNIPPSNPNWVLISTKLGE 232 + + W++ + + Sbjct: 227 NMTKP-RDGSRGWLVAGVQALQ 247 >gi|324518944|gb|ADY47245.1| 39S ribosomal protein L45 [Ascaris suum] Length = 365 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 3/137 (2%) Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151 + FDPK F A + Y + + K + + + + Sbjct: 182 KEGFEKFDPKLFGATADSIYVEAHKALMARDKVMLHKYITEHAFVKMWPDVENGSVVWEM 241 Query: 152 VKSSLVGIDDM---KIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208 V+ + +T+R+ A YDK LI V++ Sbjct: 242 VEQKEPSRVVAIRCSDSPYKSGNDIAQLTVRMHTVQKLAIYDKFGRLILGSEVEPKAVVE 301 Query: 209 IWTFVRNIPPSNPNWVL 225 F +I + W L Sbjct: 302 YVVFENHIASLDGAWRL 318 >gi|324518594|gb|ADY47149.1| 39S ribosomal protein L45 [Ascaris suum] Length = 373 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 3/137 (2%) Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151 + FDPK F A + Y + + K + + + + Sbjct: 182 KEGFEKFDPKLFGATADSIYVEAHKALMARDKVMLHKYITEHAFVKMWPDVENGSVVWEM 241 Query: 152 VKSSLVGIDDM---KIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208 V+ + +T+R+ A YDK LI V++ Sbjct: 242 VEQKEPSRVVAIRCSDSPYKSGNDIAQLTVRMHTVQKLAIYDKFGRLILGSEVEPKAVVE 301 Query: 209 IWTFVRNIPPSNPNWVL 225 F +I + W L Sbjct: 302 YVVFENHIASLDGAWRL 318 >gi|328768615|gb|EGF78661.1| hypothetical protein BATDEDRAFT_90410 [Batrachochytrium dendrobatidis JAM81] Length = 430 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 19/163 (11%), Positives = 48/163 (29%), Gaps = 2/163 (1%) Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYE 112 R + + + + + +R V F FL E + + Sbjct: 239 AARRSVEQSESPLMSRVRNFLASTKVEESEHARTIRAFKQVEPTFSVDAFLKETTQYTIP 298 Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI-EE 171 ++++F +G +++ ++K S L+ I + I + + Sbjct: 299 ELMEAFLKGDADTLKEWCSEAALAKLTAGFESQKQQGLVSDSKLLDIRGVDIRQLKLLND 358 Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVR 214 I I Q I ++ ++ ++ F + Sbjct: 359 EVPIILIGFTTQEILLFRNRKGEIVVGSEDVILTASYAIAFTK 401 >gi|324516912|gb|ADY46671.1| 39S ribosomal protein L45 [Ascaris suum] gi|324517061|gb|ADY46715.1| 39S ribosomal protein L45 [Ascaris suum] gi|324517081|gb|ADY46721.1| 39S ribosomal protein L45 [Ascaris suum] Length = 379 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 3/137 (2%) Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151 + FDPK F A + Y + + K + + + + Sbjct: 182 KEGFEKFDPKLFGATADSIYVEAHKALMARDKVMLHKYITEHAFVKMWPDVENGSVVWEM 241 Query: 152 VKSSLVGIDDM---KIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208 V+ + +T+R+ A YDK LI V++ Sbjct: 242 VEQKEPSRVVAIRCSDSPYKSGNDIAQLTVRMHTVQKLAIYDKFGRLILGSEVEPKAVVE 301 Query: 209 IWTFVRNIPPSNPNWVL 225 F +I + W L Sbjct: 302 YVVFENHIASLDGAWRL 318 >gi|294899174|ref|XP_002776521.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239883553|gb|EER08337.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 604 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/162 (11%), Positives = 56/162 (34%), Gaps = 6/162 (3%) Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKL 129 + + + T + + +R++ V +F + + I+ + EG V +E Sbjct: 443 QNPMVDRIFGETEIAQSIREMKEVDPNFRLSQMAEDIEHVVAPRIIRWYLEGDVERLEAH 502 Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGID---DMKIINASIEENTVYITIRIVGQFIS 186 + N S+ R + + + ++++ ++K + E ++ Q I+ Sbjct: 503 CGEAAFAAVNASVKARHTQKLTLDTNILQPPMDVELKGAKTASEVDSPCFIFTFSTQQIN 562 Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRN--IPPSNPNWVLI 226 ++ ++ + +V ++ W L Sbjct: 563 CLRNEFGEVVEGAVDDIRRVFYAMAIQKHPEPESGGCEWSLA 604 >gi|302848231|ref|XP_002955648.1| hypothetical protein VOLCADRAFT_106869 [Volvox carteri f. nagariensis] gi|300259057|gb|EFJ43288.1| hypothetical protein VOLCADRAFT_106869 [Volvox carteri f. nagariensis] Length = 296 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 21/138 (15%) Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN--- 166 +Y+++ + G + E V + ++ R V+ +V D + I Sbjct: 156 AYKSVNLAIATGDMRYAEPFVTESMLLRLTGEVTRR-GRAARVEWRMVSEPDPRDIKLVC 214 Query: 167 --------ASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI-- 216 + V T R+ + + A YD LI+ DP V+D W F R I Sbjct: 215 GTVVQNPLKQGRLHFVQWTARVPSRQVVAVYDARGNLIAGDPHKELDVVDYWVFERPILK 274 Query: 217 -------PPSNPNWVLIS 227 P W L+ Sbjct: 275 ALVAPRPGPQGAEWRLLE 292 >gi|34496113|ref|NP_900328.1| hypothetical protein CV_0658 [Chromobacterium violaceum ATCC 12472] gi|34101967|gb|AAQ58334.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 338 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/209 (8%), Positives = 58/209 (27%), Gaps = 27/209 (12%) Query: 24 FLQLRGVLGKKTGNE--KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIG 81 F + +K GN + + + + + K N ++ G Sbjct: 154 FFR------RKAGNPAANAPQPAGMPRGMADSQGQSNFDAIPKIGSGMNGGAVPAGNGFG 207 Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 N + + FL +A+ ++ + + + K + ++ Sbjct: 208 GGFNAAPAPAR-LPDGTETPHFLRQAKATFLHLQSLNTPESLEEVRKYMTPDLFSALAAD 266 Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201 + + + +D ++ A++E ++ + Sbjct: 267 I-----AGNSGVADFPQLDC-QLSEATVENGAYIASVTF-----------SGTVSEEVGA 309 Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + W +V++ + W++ + Sbjct: 310 PAVPFTETWHYVKD-GGTGGKWLVAGIQQ 337 >gi|294891975|ref|XP_002773832.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239879036|gb|EER05648.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 497 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 19/168 (11%), Positives = 58/168 (34%), Gaps = 14/168 (8%) Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLV 130 + + + T + + +R++ F + + N +I+ F EG ++ Sbjct: 324 NPMLDRVFGETEIAQSIREMKETDPHFRLSQLVEDVENVVAPSIIRWFLEGDAEDLKLHC 383 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLV---GIDDMKIINASIEENTVYITIRIVGQFISA 187 + N S+ R++ + ++ +++ ++K + E ++ Q I+ Sbjct: 384 GEAAFAAVNASIDARRNQKLSLDPTILQGPEDLELKGAKSGGEVDSPCFIFTFSTQQINC 443 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN-------WVLIST 228 ++ ++ + +V ++ PN W + Sbjct: 444 LRNEAGEVVEGAIDDIRQVFYAMAVQKH---PEPNTTGLKFPWRMQEI 488 >gi|218506347|ref|ZP_03504225.1| putative import inner membrane translocase protein, TIM family [Rhizobium etli Brasil 5] Length = 88 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 4/84 (4%) Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGK 205 +N + S V + I A E+ Y T+ + I A ++D ++S D + Sbjct: 1 TNGVRNRVSDVKLLQGDIAEAWREDGQEYATLAMRYSSIDAMVERDSGRVVSGDDRRPSE 60 Query: 206 VIDIWTFVRNIPPSNPNWVLISTK 229 +IWTFVR +W L + + Sbjct: 61 STEIWTFVRK---PGGDWKLAAIQ 81 >gi|226941931|ref|YP_002797005.1| hypothetical protein LHK_03018 [Laribacter hongkongensis HLHK9] gi|226716858|gb|ACO75996.1| hypothetical protein LHK_03018 [Laribacter hongkongensis HLHK9] Length = 333 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 13/177 (7%), Positives = 49/177 (27%), Gaps = 17/177 (9%) Query: 56 ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115 + + P + + + F+ +A+ ++ + Sbjct: 174 PPNARAPLNPNAFKINPTGSVPVPPIGGGYAQPAALTRLPDGTEVPHFVRQAKATFMHLQ 233 Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY 175 V + K + +++ + + +D + ++ + + Sbjct: 234 SMNNPDNVEEVRKYLTPELFEQLRADI-----AGNPETADFPQLDCQVVDASTEADGRIV 288 Query: 176 ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ++R L+ S + W F+++ ++ WV+ + + Sbjct: 289 ASVRF-----------SGLVSESVGAPALPFAETWHFIKS-DATSQKWVVAGIQQDQ 333 >gi|324517598|gb|ADY46868.1| Import inner membrane translocase subunit tim-44 [Ascaris suum] Length = 323 Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/145 (13%), Positives = 48/145 (33%), Gaps = 20/145 (13%) Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN-SYEAIVDSFFEGKVHAIEKLV 130 D I +F + +++V+ +I + FD ++L ++++F G + ++ Sbjct: 197 DRITSVFTTKSEVSEVLTEIAKIDPSFDKVEWLRFCEREVIPNVLEAFIRGDLKILQDWC 256 Query: 131 DSRVYQDFNDSLSTRKSNEK-NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189 R Y + K S ++ I + I+ Sbjct: 257 HERAYNALAAVVKEYKKVNFSTADSRVIDISKV------------------EAFMINVVK 298 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVR 214 + + ++ D +V +W R Sbjct: 299 NLEGKVVQGDENNPVRVHHVWVMCR 323 >gi|51473623|ref|YP_067380.1| hypothetical protein RT0421 [Rickettsia typhi str. Wilmington] gi|51459935|gb|AAU03898.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 212 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 81/230 (35%), Gaps = 26/230 (11%) Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSK------RDERGI 59 M +L+FA I F++ +L LG + E+ + + G+ + + + Sbjct: 1 MSPQIIELLIFAIIAFYIINKLITTLGSTSEEEQIKNKSYFGEPMIKDVTYSTVKANKIA 60 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 + + + + M I FDP F+N A+ +++ I+++ + Sbjct: 61 EKNISRVQDIKVFKDIIVEHNINAVVDGMEQIHKRLYSFDPVKFINNAKTAFQMIIEAAY 120 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 + + + +L+D R ++F + K + N ++I + Sbjct: 121 KKDIKELTELIDKRYLEEFEKITPSYG------DFFDSSALSAKYSEIYMFGNNIFIKLL 174 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G+ + + + + WTF RN +W L + + Sbjct: 175 FQGKNVV--------------DKIENLQEEWTFTRNANTKEVDWFLSNIE 210 >gi|332296059|ref|YP_004437982.1| import inner membrane translocase subunit Tim44 [Thermodesulfobium narugense DSM 14796] gi|332179162|gb|AEE14851.1| import inner membrane translocase subunit Tim44 [Thermodesulfobium narugense DSM 14796] Length = 316 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 21/202 (10%), Positives = 64/202 (31%), Gaps = 20/202 (9%) Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93 K E+ + +G K ++ + ++ + + Sbjct: 129 KRRFERDKNYNVDSLNKEQYNTSSIYNDSFQGVKLGSIQAKMDVDRGLKEIERAFPSFSE 188 Query: 94 VYTDFDPKD-FLN----EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148 K+ F+N + ++ + L + ++ +F + N Sbjct: 189 EDLRSKIKEIFVNIQKAWSEKNFTML------------RNLTTNEMFLNFQKQIEELNKN 236 Query: 149 EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208 + + M +++A +E+ +Y+T +I D ++ ++ + + + Sbjct: 237 GITNFVENISVKRMDLVDAWMEDEKIYVTYKIEATMTDYDVDVNDNILRGNKDKLIDFQE 296 Query: 209 IWTFVRNIPPSNPNWVLISTKL 230 +W+F + + W L + Sbjct: 297 LWSF---VSKDSIKWELSAINQ 315 >gi|153829224|ref|ZP_01981891.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|148875262|gb|EDL73397.1| conserved hypothetical protein [Vibrio cholerae 623-39] Length = 95 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 44/109 (40%), Gaps = 15/109 (13%) Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180 ++ I + V +++D + + + + + V D +I+ A + N ++++ Sbjct: 1 NQLETIREYVSPSLFEDLKAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQF 56 Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229 G++ A + E D+W R++ N W+++ + Sbjct: 57 SGRYRDA--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 94 >gi|328872019|gb|EGG20389.1| hypothetical protein DFA_07513 [Dictyostelium fasciculatum] Length = 310 Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 66/220 (30%), Gaps = 18/220 (8%) Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87 V+ +K G + + + + +T +D+I + + + Sbjct: 91 YTVMRQKVGRTMKPNIYIQSPGQIFEPNLPVPLTKILVTPSSWIDTIRFYYRTYGSIGVI 150 Query: 88 MRDIVS-VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND----SL 142 + + F K F+ +A+ + + + +++L Y Sbjct: 151 KSKLKALTQDQFAVKSFVEQAKEIFINLNKAIANSDTDEVKELATIHYYSILAKNTQFDK 210 Query: 143 STRKSNEKNVKSSL---------VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193 K N + + + ++ A E I + G+ D Sbjct: 211 VDGKKNNVKSEWTCELDKPKMLWIRAGQIRTTAAGGMEYFGQICVEFSGKQSLTRTDTKK 270 Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL---ISTKL 230 +I S + + D++ F R + +W + + T+ Sbjct: 271 NIIISQVKDA-EFKDVYVFERCLSSLPSSWRVCQTVDTQQ 309 >gi|307703104|ref|ZP_07640051.1| hypothetical protein SMSK23_0938 [Streptococcus oralis ATCC 35037] gi|307623497|gb|EFO02487.1| hypothetical protein SMSK23_0938 [Streptococcus oralis ATCC 35037] Length = 234 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 47/135 (34%), Gaps = 2/135 (1%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 + + +FD F++ + Y + ++ E +++ L + +Y + L Sbjct: 42 AISRVKYGDPNFDANAFISWVKEVYLKLQVAWTEKNWNSVRALESTSLYSQHSTQLEDHI 101 Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS--ASYDKDNLLISSDPEIFG 204 + V I++++I + + I+ + D+ +I DP+ Sbjct: 102 RAKTTNVLEKVCIENVRIKEFIENPDGNDTLVVILSSTLRDYVIDDETRRVIEGDPKKDL 161 Query: 205 KVIDIWTFVRNIPPS 219 + F+R Sbjct: 162 FTVYQLNFIRQHGSQ 176 >gi|293364855|ref|ZP_06611572.1| hypothetical protein HMPREF8579_0701 [Streptococcus oralis ATCC 35037] gi|291316305|gb|EFE56741.1| hypothetical protein HMPREF8579_0701 [Streptococcus oralis ATCC 35037] Length = 318 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 47/135 (34%), Gaps = 2/135 (1%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 + + +FD F++ + Y + ++ E +++ L + +Y + L Sbjct: 126 AISRVKYGDPNFDANAFISWVKEVYLKLQVAWTEKNWNSVRALESTSLYSQHSTQLEDHI 185 Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS--ASYDKDNLLISSDPEIFG 204 + V I++++I + + I+ + D+ +I DP+ Sbjct: 186 RAKTTNVLEKVCIENVRIKEFIENPDGNDTLVVILSSTLRDYVIDDETRRVIEGDPKKDL 245 Query: 205 KVIDIWTFVRNIPPS 219 + F+R Sbjct: 246 FTVYQLNFIRQHGSQ 260 >gi|330898717|gb|EGH30136.1| import inner membrane translocase, subunit Tim44 [Pseudomonas syringae pv. japonica str. M301072PT] Length = 155 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 18/168 (10%), Positives = 54/168 (32%), Gaps = 15/168 (8%) Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 + + G+ +++ F+ + FL+ AR ++++ + + Sbjct: 1 AAPPYQRETSQPAQNPIFGSSSPASAAPVINAPAWFNEQRFLDAARGHFQSLQQHWDANE 60 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + I + V ++ Q R +S+ + +++ + T+ G Sbjct: 61 MDKIAEFVTPQMLQFLK---KERADLGDGFQSTYIENLQVQLDGVDDRADKTIATLTFSG 117 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 ++ +D + + W R + P W++ + Sbjct: 118 VSKTSRFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 153 >gi|306828965|ref|ZP_07462157.1| NinF protein [Streptococcus mitis ATCC 6249] gi|304429143|gb|EFM32231.1| NinF protein [Streptococcus mitis ATCC 6249] Length = 238 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 47/135 (34%), Gaps = 2/135 (1%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 + + +FD F++ + Y + ++ E +++ L + +Y + L Sbjct: 46 AISRVKYGDPNFDANAFISWVKEVYLKLQVAWTEKNWNSVRALESTSLYSQHSTQLEDHI 105 Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS--ASYDKDNLLISSDPEIFG 204 + V I++++I + + I+ + D+ +I DP+ Sbjct: 106 RAKTTNVLEKVCIENVRIKEFIENPDGNDTLVVILSSTLRDYVIDDETRRVIEGDPKKDL 165 Query: 205 KVIDIWTFVRNIPPS 219 + F+R Sbjct: 166 FTVYQLNFIRQHGSQ 180 >gi|189184596|ref|YP_001938381.1| hypothetical protein OTT_1689 [Orientia tsutsugamushi str. Ikeda] gi|189181367|dbj|BAG41147.1| hypothetical protein OTT_1689 [Orientia tsutsugamushi str. Ikeda] Length = 211 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 66/216 (30%), Gaps = 36/216 (16%) Query: 26 QLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN----------LDSIN 75 +L VLG E+ F + + T + Sbjct: 21 KLIAVLGSVDEAERQKHKSFKSYFGEHYNLKDVTNTNVAESSSTRLSCNQDLNYFKQNNL 80 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 + + + + S F+ F N A N + I+++ I L+D R Sbjct: 81 VVDEATDYIITELIKLKSKVPSFNINRFYNTAINVIKMIIEAVQNANYKTIFSLLDKRFV 140 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 F ++ + K + +D + +++ + I+I + Sbjct: 141 DQF---------HQISSKYVNIHVDSINFKLSNLNSLGNNVFIKIRIE------------ 179 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 I + K+ + WTF +NI P W L + + Sbjct: 180 IDGN-----KLKEEWTFSKNITTPGPQWYLSNIEEV 210 >gi|315612608|ref|ZP_07887521.1| NinF protein [Streptococcus sanguinis ATCC 49296] gi|315315589|gb|EFU63628.1| NinF protein [Streptococcus sanguinis ATCC 49296] Length = 241 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 48/136 (35%), Gaps = 2/136 (1%) Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145 + + + +FD + F + + Y + ++ E +++ L + +Y + L Sbjct: 48 RAISLVKYGDPNFDAEAFTSWVKEVYLKLQVAWTEKNWNSVRALESTSLYSQHSAQLEDH 107 Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS--ASYDKDNLLISSDPEIF 203 + V I++++I + + I+ + D+ +I DP+ Sbjct: 108 IRAKTTNVLEKVCIENVRIKEFIENPDGNDTLVVILSSILRDYVIDDETRRVIEGDPKKD 167 Query: 204 GKVIDIWTFVRNIPPS 219 + F+R Sbjct: 168 LFTVYQLNFIRQHGSQ 183 >gi|84998204|ref|XP_953823.1| mitochondrial inner membrane subunit [Theileria annulata] gi|65304820|emb|CAI73145.1| mitochondrial inner membrane subunit, putative [Theileria annulata] Length = 395 Score = 55.7 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 52/134 (38%), Gaps = 2/134 (1%) Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLV 130 + I T L +R++ + F+ D + + +V+S+ +G A++ Sbjct: 214 NPIISKLFGDTSLASALREMKRLDPSFNLPDLVELVEHVIAPHVVESYLKGDGEALKLHC 273 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI-EENTVYITIRIVGQFISASY 189 + N S+ R + + S++ + ++++ +E ++ Q I+ Sbjct: 274 GEVAFNILNTSIKERNLQKLVLDPSILILKNVELKGGMKVKEGDPWLIFNFTTQQINCLR 333 Query: 190 DKDNLLISSDPEIF 203 D + + + ++ Sbjct: 334 DTKGKVCAGNCDVI 347 >gi|309799759|ref|ZP_07693972.1| putative transporter [Streptococcus infantis SK1302] gi|308116608|gb|EFO54071.1| putative transporter [Streptococcus infantis SK1302] Length = 305 Score = 55.7 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 47/138 (34%), Gaps = 2/138 (1%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 + + +FD F + + Y + ++ + + + L + +Y + L Sbjct: 113 AVSRVKHGDPNFDADTFASWVKEVYIQLQAAWTKKDWNLVRSLESTSLYSQHSTQLEDHI 172 Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS--ASYDKDNLLISSDPEIFG 204 + V +++++I + + + I+ + D+ +I DP+ Sbjct: 173 RAKTTNVLEKVYVENIRIKDFYENPDGNDTLVVILSSTLRDYIIEDQSKRVIEGDPQEDL 232 Query: 205 KVIDIWTFVRNIPPSNPN 222 + F+R N Sbjct: 233 FTVYQMNFIRKHGSQTEN 250 >gi|308460507|ref|XP_003092557.1| hypothetical protein CRE_26805 [Caenorhabditis remanei] gi|308253077|gb|EFO97029.1| hypothetical protein CRE_26805 [Caenorhabditis remanei] Length = 361 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 7/139 (5%) Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151 + FD K F +A + Y + + + + + + Sbjct: 167 KQGFEKFDVKTFCAKAEDIYVRAHKALEARDKKEMYRCITEYAFAKMWPDVENGSVR--F 224 Query: 152 VKSSLVGIDDMKIINASIEEN-----TVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 +V + + IT+R+ + A YD+ LI V Sbjct: 225 ELVEVVEPSRVVAVRCFDNPPKSGNDIAQITVRMHTKQKLAVYDRFGGLILGSENEEKDV 284 Query: 207 IDIWTFVRNIPPSNPNWVL 225 ++ F +I + W L Sbjct: 285 VEYVVFENHIAVVDGEWRL 303 >gi|328859204|gb|EGG08314.1| hypothetical protein MELLADRAFT_47868 [Melampsora larici-populina 98AG31] Length = 497 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 50/154 (32%), Gaps = 8/154 (5%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140 T KV+R I + DF+ FL + R IVD++ + + ++ Y Sbjct: 334 TETAKVVRLIKEIDRDFEFDGFLRDLREYIVPEIVDAYVDADLKVLKLWTSEGAYNVITA 393 Query: 141 SLSTRKSNEKNVKSSLVGID--DMKIINASIEENTVYITIRIVGQFISASYDK-DNLLIS 197 + T ++ ++ + D+ E I I+ + + + Sbjct: 394 PMQTYLQRGLRPENQVIDLKGIDIMSAKVLQERELPVFVIAFRTHEINCFTNPGNGKVEV 453 Query: 198 SDPEIFGKVIDIWTFVRNI----PPSNPNWVLIS 227 +P+ +V + R W +I Sbjct: 454 GNPDQIEQVQYVIVMTREAEQCGNEITGGWKVID 487 >gi|115534069|ref|NP_497347.3| hypothetical protein Y119D3B.16 [Caenorhabditis elegans] gi|97537043|sp|Q95Y71|RM45_CAEEL RecName: Full=Probable 39S ribosomal protein L45, mitochondrial; Flags: Precursor gi|78771770|gb|AAK29715.4| Hypothetical protein Y119D3B.16 [Caenorhabditis elegans] Length = 357 Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 7/139 (5%) Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151 + FD K F +A + Y + + A+ K + + + Sbjct: 165 KQGFEKFDIKTFCAKAEDIYVQAHRALEQRDKTAMYKYITEYAFAKMWPDVENGSVR--F 222 Query: 152 VKSSLVGIDDMKIINASIEEN-----TVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 S++ + + IT+R+ + A YD+ L+ + V Sbjct: 223 ELISVLEPSRVVAVRCFDNPPKSGNDIAQITVRMHTRQKLAVYDRFGGLLLGSEDEEKDV 282 Query: 207 IDIWTFVRNIPPSNPNWVL 225 ++ F +I + W L Sbjct: 283 VEYVVFENHIAVVDGEWRL 301 >gi|323698095|ref|ZP_08110007.1| hypothetical protein DND132_0677 [Desulfovibrio sp. ND132] gi|323458027|gb|EGB13892.1| hypothetical protein DND132_0677 [Desulfovibrio desulfuricans ND132] Length = 282 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 23/203 (11%), Positives = 52/203 (25%), Gaps = 21/203 (10%) Query: 32 GKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL--DSINELFPIGTRLNKVMR 89 G + G+ + S + + R + ++ ++ P T Sbjct: 98 GDEDGSGETRPDVRSDDGTAQRPEARTMDRHEAARRTWDMLGSREPGQRPEPTTPTGTPT 157 Query: 90 DIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNE 149 FD +FL A+ + + + + + VY D + R Sbjct: 158 GSSLRADGFDEAEFLEGAKVLFSRFQQARDKEDYDDLRDFLSDGVYSD-AVAAGERPR-- 214 Query: 150 KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDI 209 + V + + + ++ Q + + + Sbjct: 215 -----TEVMLVSALLTELHSDNGRTTASVHYDAQLRV-----------GEEGRPVRYRAV 258 Query: 210 WTFVRNIPPSNPNWVLISTKLGE 232 W F R+ WVL + Sbjct: 259 WEFDRDDTTPGGLWVLERINSID 281 >gi|148284459|ref|YP_001248549.1| hypothetical protein OTBS_0806 [Orientia tsutsugamushi str. Boryong] gi|146739898|emb|CAM79872.1| hypothetical protein OTBS_0806 [Orientia tsutsugamushi str. Boryong] Length = 211 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 68/216 (31%), Gaps = 36/216 (16%) Query: 26 QLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN----------LDSIN 75 +L VLG E+ F + + T + Sbjct: 21 KLIAVLGSVDEAERQKHKSFKSYFGEPYNLKDVTNTNVVESSSIRLSCNQDLNYFKQNNL 80 Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135 + + + + S F+ F N A N + I+++ I L+D R Sbjct: 81 VVDEAADYIITELIKLKSKVPSFNINRFYNTAINVIKMIIEAVQNVDYKTIFSLLDKRFV 140 Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 F ++ + K + + ++ + +++ I I+I + Sbjct: 141 DQF---------HQMSSKYANIHVNSINFKLSNLNSLGNNIFIKIRIE------------ 179 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 I+ + K+ + WTF +NI P W L + + Sbjct: 180 INGN-----KLKEEWTFSKNITTPGPQWYLSNIEEV 210 >gi|67607228|ref|XP_666797.1| mitochondrial import inner membrane translocase [Cryptosporidium hominis TU502] gi|54657855|gb|EAL36565.1| mitochondrial import inner membrane translocase [Cryptosporidium hominis] Length = 424 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 18/141 (12%), Positives = 53/141 (37%), Gaps = 13/141 (9%) Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 G +++KV++++ ++ +F DF++ ++S+ + H + Y+ Sbjct: 251 GNKISKVVKEMKAINPNFKLTDFMSFFEEYILPKFMESYLKCDEHKLRLHCGDVAYRQLC 310 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMK------------IINASIEENTVYITIRIVGQFISA 187 ++ K + + ++ + D++ + I+ N Q I+ Sbjct: 311 SNIKKLKKMGLCLNTKILQLGDVELIGAEISDLMFSFKDCKIQANQPEFMFTFKTQQINY 370 Query: 188 SYDKDNLLISSDPEIFGKVID 208 D + +IS + ++ Sbjct: 371 LKDSNGRIISGSIDDIKELQY 391 >gi|254518212|ref|ZP_05130268.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] gi|226911961|gb|EEH97162.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] Length = 266 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/150 (11%), Positives = 55/150 (36%), Gaps = 7/150 (4%) Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145 ++++ + ++D + N+ ++ + ++ E ++ + ++Y Sbjct: 103 SAIKNLSKMDYNWDYDNIKNDIEEAFYKVQVAWMERNQDLAKEYMSEKLYIRHRSKTEWM 162 Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQFISAS-YDKDNLLISSDPEI 202 K ++ + + I ++ T + + I + I + ++ N +I + Sbjct: 163 KVRKEKNILEKIKLVSAIPIALQDKDGTNEDSLWVHIKAKSIDYTIKEETNEIIEGNKYR 222 Query: 203 FGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + W F++N WVL + + Sbjct: 223 ITHFEEYWKFIKNEK----RWVLDEIRQID 248 >gi|156839125|ref|XP_001643257.1| hypothetical protein Kpol_1063p9 [Vanderwaltozyma polyspora DSM 70294] gi|156113859|gb|EDO15399.1| hypothetical protein Kpol_1063p9 [Vanderwaltozyma polyspora DSM 70294] Length = 417 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/156 (11%), Positives = 50/156 (32%), Gaps = 8/156 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARN-SYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138 T ++V+ + F F R +++++ +G ++K Y + Sbjct: 252 AETESSRVLSQFKLMDPTFSNDSFTKHLREYIIPEVLEAYVKGDEAVLKKWFSEAPYNVY 311 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFISASYD-KDNLL 195 + + ++ I ++I++A ++ + + Q I K + Sbjct: 312 AAQQKEFRKQQLFPDGRILDIRGVEIVSAKLLAPQDIPVLVVGCRAQEIHLYRKVKTGEI 371 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLIS 227 + D F R+ + + W ++ Sbjct: 372 AAGDESNILMSSYAMVFTRDPEQIDDDETEGWKILE 407 >gi|66359344|ref|XP_626850.1| possible mitochondrial import inner membrane, translocase subunit TIM44 [Cryptosporidium parvum Iowa II] gi|46228138|gb|EAK89037.1| possible mitochondrial import inner membrane, translocase subunit TIM44 [Cryptosporidium parvum Iowa II] Length = 424 Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 17/141 (12%), Positives = 53/141 (37%), Gaps = 13/141 (9%) Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 G +++KV++++ ++ +F DF++ ++S+ + H + Y+ Sbjct: 251 GNKISKVVKEMKAINPNFKLTDFMSFFEEYILPKFMESYLKCDEHKLRLHCGDVAYRQLC 310 Query: 140 DSLSTRKSNEKNVKSSLVGIDDMK------------IINASIEENTVYITIRIVGQFISA 187 ++ K + + ++ + +++ + I+ N Q I+ Sbjct: 311 SNIEKLKKMGLCLNTKILQLGNVELIGAEISDLMFSFKDCKIQTNQPEFMFTFKTQQINC 370 Query: 188 SYDKDNLLISSDPEIFGKVID 208 D + +IS + ++ Sbjct: 371 LQDSNGRIISGSIDDIKELQY 391 >gi|6322167|ref|NP_012242.1| Tim44p [Saccharomyces cerevisiae S288c] gi|400272|sp|Q01852|TIM44_YEAST RecName: Full=Mitochondrial import inner membrane translocase subunit TIM44; AltName: Full=Inner membrane import site protein 45; Short=ISP45; AltName: Full=Membrane import machinery protein MIM44; AltName: Full=Mitochondrial protein import protein 1; Flags: Precursor gi|3967|emb|CAA47693.1| Mitochondrial Protein Import 1 protein [Saccharomyces cerevisiae] gi|599977|emb|CAA86970.1| mitochondrial import protein [Saccharomyces cerevisiae] gi|151943135|gb|EDN61470.1| translocase of the inner membrane [Saccharomyces cerevisiae YJM789] gi|190406244|gb|EDV09511.1| hypothetical protein SCRG_05201 [Saccharomyces cerevisiae RM11-1a] gi|207344275|gb|EDZ71473.1| YIL022Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256272151|gb|EEU07150.1| Tim44p [Saccharomyces cerevisiae JAY291] gi|285812624|tpg|DAA08523.1| TPA: Tim44p [Saccharomyces cerevisiae S288c] gi|323333058|gb|EGA74459.1| Tim44p [Saccharomyces cerevisiae AWRI796] gi|323354619|gb|EGA86455.1| Tim44p [Saccharomyces cerevisiae VL3] Length = 431 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 52/156 (33%), Gaps = 8/156 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138 T ++V + F + F R I++++ +G V ++K + + Sbjct: 266 AETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVY 325 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFIS-ASYDKDNLL 195 K + ++ I ++I++A ++ + + Q I+ K + Sbjct: 326 AAQQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEI 385 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLIS 227 + D F R+ + + W ++ Sbjct: 386 AAGDEANILMSSYAMVFTRDPEQIDDDETEGWKILE 421 >gi|259147236|emb|CAY80489.1| Tim44p [Saccharomyces cerevisiae EC1118] Length = 431 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 8/156 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138 T ++V + F + F R I++++ G V ++K + + Sbjct: 266 AETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVRGDVKVLKKWFSEAPFNVY 325 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFIS-ASYDKDNLL 195 K + ++ I ++I++A ++ + + Q I+ K + Sbjct: 326 AAQQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEI 385 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLIS 227 + D F R+ + + W ++ Sbjct: 386 AAGDEANILMSSYAMVFTRDPEQIDDDETEGWKILE 421 >gi|328767960|gb|EGF78008.1| hypothetical protein BATDEDRAFT_91206 [Batrachochytrium dendrobatidis JAM81] Length = 264 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 66/183 (36%), Gaps = 12/183 (6%) Query: 58 GIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117 +L K N + I E + + + + P+ F EA Y A+ + Sbjct: 75 PPSSLPAPINKANWNIIWERIKKLVLATWSVYQVKTTTKGWKPRAFAIEAEKLYIAMNKA 134 Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLST--------RKSNEKNVKSSLVGIDDMKIINASI 169 + G + V + + + SN + + +V + K+ + Sbjct: 135 YARGDRAELSNCVTDGMMSALSPEIKAMQRIGKFVWDSNGSDRRPQVVHLATAKVATETG 194 Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS--NPNWVLIS 227 + IT+R+ + A+Y KD+ LI+ +P+ + +++ + + N W + Sbjct: 195 DMRLSQITVRVNVRQSMATY-KDDTLIAGNPDTYTSIVEHIVMEKWLDGKWANRPWKIAG 253 Query: 228 -TK 229 + Sbjct: 254 KIQ 256 >gi|289677454|ref|ZP_06498344.1| import inner membrane translocase, subunit Tim44 [Pseudomonas syringae pv. syringae FF5] Length = 151 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 18/163 (11%), Positives = 54/163 (33%), Gaps = 15/163 (9%) Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 + + G+ +++ F+ + FL+ AR ++++ + ++ I Sbjct: 2 QRETSQPAQNPIFGSSSPASTAPVINAPAWFNEQRFLDAARGHFQSLQQHWDANEMDKIA 61 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 + V ++ Q R +S+ + +++ + T+ G ++ Sbjct: 62 EFVTPQMLQFLK---KERADLGDGFQSTYIENLQVQLDGVDDRADKTIATLTFSGVSKTS 118 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 +D + + W R + P W++ + Sbjct: 119 RFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 149 >gi|119580915|gb|EAW60511.1| mitochondrial ribosomal protein L45 [Homo sapiens] Length = 135 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 2/89 (2%) Query: 138 FNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195 + + V+S + + IT+R+ + A YD+ L Sbjct: 1 MTWDIKYKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRL 60 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224 + ++ V++ F + + +W Sbjct: 61 MYGQEDVPKDVLEYVVFEKQLTNPYGSWR 89 >gi|323348152|gb|EGA82406.1| Tim44p [Saccharomyces cerevisiae Lalvin QA23] Length = 431 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 8/156 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138 T ++V + F + F R I++++ G V ++K + + Sbjct: 266 AETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVXGDVKVLKKWFSEAPFNVY 325 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFIS-ASYDKDNLL 195 K + ++ I ++I++A ++ + + Q I+ K + Sbjct: 326 AAQQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEI 385 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLIS 227 + D F R+ + + W ++ Sbjct: 386 AAGDEANILMSSYAMVFTRDPEQIDDDETEGWKILE 421 >gi|166033052|ref|ZP_02235881.1| hypothetical protein DORFOR_02774 [Dorea formicigenerans ATCC 27755] gi|166027409|gb|EDR46166.1| hypothetical protein DORFOR_02774 [Dorea formicigenerans ATCC 27755] Length = 183 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 52/150 (34%), Gaps = 8/150 (5%) Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145 + M+ +++PK +++Y I + + EK + + Q++N L Sbjct: 32 RSMKSFEKPGEEWNPKKMKKYVKHAYFVIQECWRRQDTSYAEKYLSKNLIQNWNSKLGWM 91 Query: 146 KSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQFISASYD-KDNLLISSDPEI 202 + N + V + + A +E + I G+ I + ++ Sbjct: 92 EVNHEKPVQERVRFLNAAPVFAFDKEGEEHDRVIYLIHGRMIGYYINIDTGEVVRG-KTS 150 Query: 203 FGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 + W F+R + WVL + + Sbjct: 151 PETFYEYWVFIR----EDGRWVLDEIRQKD 176 >gi|303246498|ref|ZP_07332777.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ] gi|302492208|gb|EFL52083.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ] Length = 267 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 55/197 (27%), Gaps = 26/197 (13%) Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93 ++G +P+ G KRD + D++ T + Sbjct: 96 RSGPTEPYDGTPPPAPPRPKRD-------MYTNAQATWDALRSTPSSKTASQSAGQPSAG 148 Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153 D ++FL A+ +Y I+ + + + +SL Sbjct: 149 ATPD---EEFLAGAKMAYGRILADIAKRDFDDLAGFTTPDFLANLKNSLPL-----SPPP 200 Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213 + V + + + G D L+ D D W FV Sbjct: 201 APDVLLVEATLAEHRE-----------QGSQTVMVVDYKVLIHEKDAPHNTDRFDRWRFV 249 Query: 214 RNIPPSNPNWVLISTKL 230 R+ NW+L + + Sbjct: 250 RDNATPGANWLLDAMEQ 266 >gi|50290757|ref|XP_447811.1| hypothetical protein [Candida glabrata CBS 138] gi|49527122|emb|CAG60760.1| unnamed protein product [Candida glabrata] Length = 412 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 8/156 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138 T +V + V F F R+ +++++ +G ++K + + Sbjct: 247 AETESARVYKQFKMVDPTFTNIGFTKHLRDYIVPEVLEAYVKGDEKVLKKWFSEAPFNVY 306 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFIS-ASYDKDNLL 195 N K E ++ I +++++A ++ + + Q I K + Sbjct: 307 NAQQKIFKKQELFSDGKILDIRGVEVVSAKLLQPQDIPVLVVGCRAQEIHLYRKAKTGEI 366 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLIS 227 + D F R+ + + W ++ Sbjct: 367 AAGDESNILMSSYAMVFTRDPEQIDDDETEGWKILE 402 >gi|126030489|pdb|2FXT|A Chain A, Crystal Structure Of Yeast Tim44 Length = 192 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 52/156 (33%), Gaps = 8/156 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138 T ++V + F + F R I++++ +G V ++K + + Sbjct: 33 AETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVY 92 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFIS-ASYDKDNLL 195 K + ++ I ++I++A ++ + + Q I+ K + Sbjct: 93 AAQQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEI 152 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLIS 227 + D F R+ + + W ++ Sbjct: 153 AAGDEANILMSSYAMVFTRDPEQIDDDETEGWKILE 188 >gi|325534055|pdb|3QK9|A Chain A, Yeast Tim44 C-Terminal Domain Complexed With Cymal-3 gi|325534056|pdb|3QK9|B Chain B, Yeast Tim44 C-Terminal Domain Complexed With Cymal-3 Length = 222 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 52/156 (33%), Gaps = 8/156 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138 T ++V + F + F R I++++ +G V ++K + + Sbjct: 57 AETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVY 116 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFIS-ASYDKDNLL 195 K + ++ I ++I++A ++ + + Q I+ K + Sbjct: 117 AAQQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEI 176 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLIS 227 + D F R+ + + W ++ Sbjct: 177 AAGDEANILMSSYAMVFTRDPEQIDDDETEGWKILE 212 >gi|310821532|ref|YP_003953890.1| hypothetical protein STAUR_4283 [Stigmatella aurantiaca DW4/3-1] gi|309394604|gb|ADO72063.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 637 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 57/163 (34%), Gaps = 4/163 (2%) Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 T + + ++ + + ++ + F+ + L + R+ + + +++F Sbjct: 93 PTGSTQRALERKEAEQRTQVSDQSVQEWVQALKRKDPQFEVQGVLAKVRHLFPLLQEAWF 152 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 + ++ + + YQ FN L + + + D +II S E + IR Sbjct: 153 KRELTPVRPFLSDATYQRFNVQLQLMAAQGVRDAICDIRLLDARIIGLSQSEWFDSLQIR 212 Query: 180 IVGQFISA----SYDKDNLLISSDPEIFGKVIDIWTFVRNIPP 218 I + L ++ ++WTFVR Sbjct: 213 IQAEMRDTDVPADASDAQALAAAQRAPLESFTEVWTFVRKPGA 255 >gi|255714799|ref|XP_002553681.1| KLTH0E04554p [Lachancea thermotolerans] gi|238935063|emb|CAR23244.1| KLTH0E04554p [Lachancea thermotolerans] Length = 479 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 52/156 (33%), Gaps = 8/156 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARN-SYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138 T +VM + +F+ + FL+ R +++++ +G+ +++ Y + Sbjct: 314 AETESARVMGQFKMMDGNFNSESFLSHLREYIIPEVLEAYVKGEEQVLKQWFSEAPYNVY 373 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFISASYD-KDNLL 195 + ++ I + I++A ++ + + Q I D K + Sbjct: 374 AAQQKVFREQGLFADGRILDIRGVDIVSAKLLPPQDLPVLVVGCRAQEIHLYRDVKTGEV 433 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLIS 227 + F R+ + W ++ Sbjct: 434 AAGTQSNILMSSYAMVFTRDPENIDDKETEGWKILE 469 >gi|50418853|ref|XP_457947.1| DEHA2C05962p [Debaryomyces hansenii CBS767] gi|49653613|emb|CAG86003.1| DEHA2C05962p [Debaryomyces hansenii] Length = 428 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 42/156 (26%), Gaps = 8/156 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138 T KV++ + F DF N ++DS+ + ++ + + Sbjct: 263 AETEQAKVIKQFKQMDPAFRVTDFTKTLTNYIVPELLDSYIKNDEKVLKHWFSEAPFNVW 322 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFIS-ASYDKDNLL 195 + ++ I + I+ + I + Q I K + Sbjct: 323 QANNKQFIQQGLFSDGKILDIRGVDIVTCKSLQPNDIPVIVVSCRAQEIHLYRKAKTGEI 382 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLIS 227 + + F R + W +I Sbjct: 383 AAGTEDHIQLSTYAMVFTRIPEEFDNTVTEGWKVIE 418 >gi|50307591|ref|XP_453775.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49642909|emb|CAH00871.1| KLLA0D16214p [Kluyveromyces lactis] Length = 418 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 49/156 (31%), Gaps = 8/156 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARN-SYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138 T +V + F+ +DF R I++++ +G +++ Y + Sbjct: 253 AETESARVYGQFKMMDPTFNTEDFTKHLREYIIPEILEAYVKGDEAVLKQWFSEAPYNVY 312 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFIS-ASYDKDNLL 195 + E ++ I ++I++A ++ + + Q I K + Sbjct: 313 AAQQKQFREQELFADGKILDIRGVEIVSAKLLPPQDIPVLVVGCRAQEIHLYRKAKTGEI 372 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLIS 227 + F R+ + W ++ Sbjct: 373 AAGAESSILMSSYAMVFTRDPETVDDKETEGWKILE 408 >gi|33146500|dbj|BAC79609.1| hypothetical protein [Oryza sativa Japonica Group] gi|50510250|dbj|BAD31456.1| hypothetical protein [Oryza sativa Japonica Group] Length = 353 Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 51/126 (40%), Gaps = 11/126 (8%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 + K+F ++A Y+ + G ++ K++ R++ + L R+S +V L Sbjct: 207 GYTKKEFYDQAFKIYKEVNTLMAHGDTSSLRKILTERMHSTIKNELKKRQSMWSSVHWEL 266 Query: 157 VGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 V + + +++ + +T+ V + +Y+ ++S D + Sbjct: 267 VEPAVCIRTLRARMIGLDKNDLDKAFIQLTLEFVTKQKFEAYNTKGEVVSGDKSKELII- 325 Query: 208 DIWTFV 213 +WT V Sbjct: 326 -VWTLV 330 >gi|146412672|ref|XP_001482307.1| hypothetical protein PGUG_05327 [Meyerozyma guilliermondii ATCC 6260] gi|146393071|gb|EDK41229.1| hypothetical protein PGUG_05327 [Meyerozyma guilliermondii ATCC 6260] Length = 420 Score = 51.5 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 15/139 (10%), Positives = 41/139 (29%), Gaps = 4/139 (2%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138 T KV++ + + F DF N ++D++ + +++ + + + Sbjct: 255 AETEQAKVIKQLRQIDPSFRITDFTRTLTNYIVPELLDAYIKNDDKVLKQWLSEAPFNVW 314 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASI--EENTVYITIRIVGQFISASYD-KDNLL 195 + ++ I + I+ + + + Q I K + Sbjct: 315 QANNKQFVQQGLFSDGRILDIRGVDIVTCKMLQPNEIPVVVVSCRAQEIHLFRKAKTGEV 374 Query: 196 ISSDPEIFGKVIDIWTFVR 214 + + F R Sbjct: 375 AAGTEDHIQLSTYAMVFTR 393 >gi|52842829|ref|YP_096628.1| transmembrane protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629940|gb|AAU28681.1| transmembrane protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 270 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 68/231 (29%), Gaps = 46/231 (19%) Query: 2 VFIKMD--SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59 +F+ +G L+ + FF+ LR + G + SG F G Sbjct: 79 LFMGNGLANGLITWLILGSVIFFIISFLRRKMNP--GFQATQSGAFRQNSFEQFTQNYGN 136 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 G T FD +FL +A+ ++ + ++ Sbjct: 137 RNSGGA------------------------HFAQQETSFDADNFLRDAKITFIRLQAAYD 172 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 + + ++ V F + + V D K+++ S + ++ +++ Sbjct: 173 QKNLQDLQTFTVPEV---FAEIKMQLDERGDAPNQTEVISLDAKLLDVSKQSLSMIASVQ 229 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + + + +IW F R WV+ + Sbjct: 230 F-----------TGTIKENGE--ISNLDEIWHF-RQFDNRK-EWVVGGIQQ 265 >gi|149447446|ref|XP_001520768.1| PREDICTED: similar to mitochondrial ribosomal protein L45, partial [Ornithorhynchus anatinus] Length = 94 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 23/67 (34%) Query: 159 IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP 218 + S +T+R+ + A YD+ L+ ++ V++ + + Sbjct: 11 VQVRCTDMVSPGNVYGQVTVRMHTRQALALYDRFGRLMYGREDLPRDVLEYVVLEKQLRN 70 Query: 219 SNPNWVL 225 W L Sbjct: 71 PYGAWRL 77 >gi|193848536|gb|ACF22724.1| mitochondrial inner membrane protein [Brachypodium distachyon] Length = 226 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 41/105 (39%), Gaps = 4/105 (3%) Query: 98 FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157 F DF+ + + + ++ ++ +G ++K + + S+ ++ ++ Sbjct: 113 FSLPDFVADIEEAIKPVLIAYSKGDTEMLKKYCNKEFIERCEGERQAYASHNLFFRNKVL 172 Query: 158 GIDDMKIINASIEENTVYITIR----IVGQFISASYDKDNLLISS 198 I + +I A + +T I + Q I +++D + Sbjct: 173 HISEPHVIEAKMLGSTPLIILGVNAPFQTQQIHCVHNRDGQITHG 217 >gi|168056436|ref|XP_001780226.1| predicted protein [Physcomitrella patens subsp. patens] gi|162668376|gb|EDQ54985.1| predicted protein [Physcomitrella patens subsp. patens] Length = 418 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 9/107 (8%) Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK---- 163 +N I ++ G A+ +LV V L R+ V LVG Sbjct: 224 QNIQGMINNALAAGDRTALRQLVTDNVLTAMKKELKHRELAWARVHWELVGPLKSIRTLQ 283 Query: 164 -----IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205 I +++ +T+RIV A+YDK L++ DPE + Sbjct: 284 GRLIGIDQKNMDTAFAQLTLRIVSTQRFAAYDKQGKLVAGDPEKEVE 330 >gi|193211982|ref|YP_001997935.1| hypothetical protein Cpar_0309 [Chlorobaculum parvum NCIB 8327] gi|193085459|gb|ACF10735.1| hypothetical protein Cpar_0309 [Chlorobaculum parvum NCIB 8327] Length = 490 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 4/162 (2%) Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDI--VSVYTDFDPKDFLNEARNSYEAIVDSF 118 + K +KK N ++ E P T ++ FD FL + R ++ + ++ Sbjct: 91 VVAKFRKKSNENAFGEPVPEATPDARIDNTPLFPGAPPGFDQSAFLAKVRKAFLEVQRAW 150 Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178 + + + VYQ FN + ++ S + I + + + Sbjct: 151 SAQSTDMMRRFISDGVYQRFNTQFKMMRLLQQGNPLSNINISMAWVDRIEQDGRYDIVHA 210 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN 220 I N D E + ++ W+F+R + Sbjct: 211 GIKASMTDRFICALNH--DLDEEGTNEFVEYWSFIRKRGAAG 250 >gi|260950873|ref|XP_002619733.1| hypothetical protein CLUG_00892 [Clavispora lusitaniae ATCC 42720] gi|238847305|gb|EEQ36769.1| hypothetical protein CLUG_00892 [Clavispora lusitaniae ATCC 42720] Length = 417 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 17/139 (12%), Positives = 41/139 (29%), Gaps = 4/139 (2%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138 T KV++ + F DF N ++D++ + +++ + + + Sbjct: 252 SETEQAKVIKQFKLMDPTFRVTDFTRTLTNYIVPELLDAYIKNDEAVLKQWLSEAPFNVW 311 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFISASYD-KDNLL 195 + S ++ I + I+ + I + Q I K + Sbjct: 312 QANNKQFVQQGLFSDSKILDIRGVDIVTCKSLQPNDVPVIVVSCRAQEIHLFRKAKTGEI 371 Query: 196 ISSDPEIFGKVIDIWTFVR 214 + + F R Sbjct: 372 AAGTEDHIQMSTYAMVFTR 390 >gi|226942212|ref|YP_002797285.1| Tim44-like domain-containing protein [Azotobacter vinelandii DJ] gi|226717139|gb|ACO76310.1| Tim44-like domain protein [Azotobacter vinelandii DJ] Length = 284 Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 64/231 (27%), Gaps = 42/231 (18%) Query: 2 VFIKMDS--GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59 +F+ L +L + F+ +L ++ ++ +G + + Sbjct: 92 MFMGDGFDGIQLLDILILALIAFLVYRL--IVARRRKLHPAVAGHAPMQRETPAQPRP-- 147 Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 R + F+ + FL AR + A+ + Sbjct: 148 ---------------------AATGAAQRRAPIQAPAWFNEQRFLEAARQHFTALQQHWD 186 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 ++ I + V ++ R +S+ + +++ + T+ Sbjct: 187 ANELDKIAEFVTPQM---LEFIRKERAELGDGFQSTYIDNLQVQLDGVDDLADKTVATLT 243 Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 G S+ + E + W R + P W++ + Sbjct: 244 FSGVSKSSRF-----------EQGETFSESWRMERRQGENQP-WLIAGIRQ 282 >gi|182625334|ref|ZP_02953108.1| conserved hypothetical protein [Clostridium perfringens D str. JGS1721] gi|177909492|gb|EDT71939.1| conserved hypothetical protein [Clostridium perfringens D str. JGS1721] Length = 261 Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 17/136 (12%), Positives = 49/136 (36%), Gaps = 3/136 (2%) Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 ++D ++ + + S+ I +++ ++ L+ + + Sbjct: 100 EAMSTLKDFEIENPAWNFYEIETQIEESFPLIQEAWMNRDYSPVKHLMTDNFFDTHTVKM 159 Query: 143 STRKSNEKNVKSSLVGIDDMKIINA--SIEENTVYITIRIVGQFISASYDKDNL-LISSD 199 + ++ S V + + I A + E +I + + + I + +++N +I D Sbjct: 160 NWMLLKKEKNILSDVELKKVTPILAVENDENGEDFIWVLLRAKMIDYTINEENNCIIDGD 219 Query: 200 PEIFGKVIDIWTFVRN 215 + W F+R Sbjct: 220 YSTANSFEEFWKFIRK 235 >gi|254707405|ref|ZP_05169233.1| calcium-binding EF-hand [Brucella pinnipedialis M163/99/10] Length = 29 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 19/29 (65%) Query: 204 GKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ++ D+WTF R+ +PNW L++T+ + Sbjct: 1 VEIKDLWTFARDTNSRDPNWKLVATEAED 29 >gi|324523301|gb|ADY48225.1| 39S ribosomal protein L45 [Ascaris suum] Length = 171 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 1/93 (1%) Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 +++ D + + E+ S +V I + +T+R+ A YDK Sbjct: 19 KMWPDVENGSVVWEMVEQKEPSRVVAIRCSD-SPYKSGNDIAQLTVRMHTVQKLAIYDKF 77 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225 LI V++ F +I + W L Sbjct: 78 GRLILGSEVEPKAVVEYVVFENHIASLDGAWRL 110 >gi|45187755|ref|NP_983978.1| ADL118Cp [Ashbya gossypii ATCC 10895] gi|44982516|gb|AAS51802.1| ADL118Cp [Ashbya gossypii ATCC 10895] Length = 418 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 17/156 (10%), Positives = 48/156 (30%), Gaps = 8/156 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARN-SYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138 T +V + F+ ++F R +++++ +G +++ Y + Sbjct: 253 AETESARVFAQFKLLDPTFNTEEFTKHLREYIIPEVLEAYVKGDEQVLKQWFSEAPYNVY 312 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFISASYDKD-NLL 195 + + E ++ I ++II+A ++ I + Q I + Sbjct: 313 SAQQKQIRQQELFADGRILDIRGVEIISAKLLPPQDVPAIVVGCRAQEIHLFRKATTGEI 372 Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLIS 227 + R+ + W ++ Sbjct: 373 AAGHESNIMLSSYAMVLTRDPEKVDDKETEGWKILE 408 >gi|110800878|ref|YP_695686.1| hypothetical protein CPF_1240 [Clostridium perfringens ATCC 13124] gi|110675525|gb|ABG84512.1| conserved hypothetical protein [Clostridium perfringens ATCC 13124] Length = 256 Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 19/151 (12%), Positives = 55/151 (36%), Gaps = 3/151 (1%) Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 K+ S +++ ++D ++ + + S+ I +++ ++ Sbjct: 80 KNGSVSRYKVYSKKREAMSTLKDFEIENPAWNFYEIETQIEESFPIIQEAWMNRDYSPVK 139 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA--SIEENTVYITIRIVGQFI 185 L+ + ++ ++ S V + + I A + E +I + + + I Sbjct: 140 HLMTDNFFDTHTVKMNWMLLKKEKNILSDVELKKVTPILAVENDENGEDFIWVLLKAKMI 199 Query: 186 SASYDKDNL-LISSDPEIFGKVIDIWTFVRN 215 + +++N +I D + W F+R Sbjct: 200 DYTINEENNCIIDGDYSTANSFEEFWKFIRK 230 >gi|168215914|ref|ZP_02641539.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239] gi|182381877|gb|EDT79356.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239] Length = 258 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 19/151 (12%), Positives = 55/151 (36%), Gaps = 3/151 (1%) Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 K+ S +++ ++D ++ + + S+ I +++ ++ Sbjct: 82 KNGSVSRYKVYSKKREAMSTLKDFEIENPAWNFYEIETQIEESFPLIQEAWMNRDYSPVK 141 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA--SIEENTVYITIRIVGQFI 185 L+ + ++ ++ S V + + I A + E +I + + + I Sbjct: 142 HLMTDNFFDTHTVKMNWMLLKKEKNILSDVELKKVTPILAVENDENGEDFIWVLLKAKMI 201 Query: 186 SASYDKDNL-LISSDPEIFGKVIDIWTFVRN 215 + +++N +I D + W F+R Sbjct: 202 DYTINEENNCIIDGDYSTANSFEEFWKFIRK 232 >gi|168213921|ref|ZP_02639546.1| conserved hypothetical protein [Clostridium perfringens CPE str. F4969] gi|170714567|gb|EDT26749.1| conserved hypothetical protein [Clostridium perfringens CPE str. F4969] Length = 260 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 19/151 (12%), Positives = 55/151 (36%), Gaps = 3/151 (1%) Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 K+ S +++ ++D ++ + + S+ I +++ ++ Sbjct: 84 KNGSVSRYKVYSKKREAMSTLKDFEIENPAWNFYEIETQIEESFPLIQEAWMNRDYSPVK 143 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA--SIEENTVYITIRIVGQFI 185 L+ + ++ ++ S V + + I A + E +I + + + I Sbjct: 144 HLMTDNFFDTHTVKMNWMLLKKEKNILSDVELKRVTPILAVENDENGEDFIWVLLKAKMI 203 Query: 186 SASYDKDNL-LISSDPEIFGKVIDIWTFVRN 215 + +++N +I D + W F+R Sbjct: 204 DYTINEENNCIIDGDYSTANSFEEFWKFIRK 234 >gi|18309965|ref|NP_561899.1| hypothetical protein CPE0983 [Clostridium perfringens str. 13] gi|18144643|dbj|BAB80689.1| hypothetical protein [Clostridium perfringens str. 13] Length = 258 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 17/136 (12%), Positives = 49/136 (36%), Gaps = 3/136 (2%) Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 ++D ++ + + S+ I +++ ++ L+ + + Sbjct: 97 EAMSTLKDFEIENPAWNFYEIETQIEESFPLIQEAWMNRDYSPVKHLMTDNFFDTHTVKM 156 Query: 143 STRKSNEKNVKSSLVGIDDMKIINA--SIEENTVYITIRIVGQFISASYDKDNL-LISSD 199 + ++ S V + + I A + E +I + + + I + +++N +I D Sbjct: 157 NWMLLKKEKNILSDVELKKVTPILAVENDENGEDFIWVLLKAKMIDYTINEENNCIIDGD 216 Query: 200 PEIFGKVIDIWTFVRN 215 + W F+R Sbjct: 217 YSTANSFEEFWKFIRK 232 >gi|168211797|ref|ZP_02637422.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC 3626] gi|170710236|gb|EDT22418.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC 3626] Length = 258 Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 18/151 (11%), Positives = 55/151 (36%), Gaps = 3/151 (1%) Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 K+ S +++ +++ ++ + + S+ I +++ ++ Sbjct: 82 KNGSVSRYKVYSKKREAMSTLKNFEIENPAWNFYEIETQIEESFPLIQEAWMNRDYSPVK 141 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA--SIEENTVYITIRIVGQFI 185 L+ + ++ ++ S V + + I A + E +I + + + I Sbjct: 142 HLMTDNFFDTHTVKMNWMLLKKEKNILSDVELKKVTPILAVENDENGEDFIWVLLKAKMI 201 Query: 186 SASYDKDNL-LISSDPEIFGKVIDIWTFVRN 215 + +++N +I D + W F+R Sbjct: 202 DYTINEENNCIIDGDYSTANSFEEFWKFIRK 232 >gi|15894044|ref|NP_347393.1| hypothetical protein CA_C0757 [Clostridium acetobutylicum ATCC 824] gi|15023641|gb|AAK78733.1|AE007591_6 Predicted membrane protein [Clostridium acetobutylicum ATCC 824] gi|325508171|gb|ADZ19807.1| membrane protein [Clostridium acetobutylicum EA 2018] Length = 265 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 16/152 (10%), Positives = 48/152 (31%), Gaps = 7/152 (4%) Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141 + D+ +++ + + ++ I ++ E + + ++Y Sbjct: 95 NESISAINDLSIDDNNWNYDEIKKDVEEAFYNIQKAWMERNQELAREYMSKKLYDKHKAE 154 Query: 142 LSTRKSNEKNVKSSLVGIDD--MKIINASIEENTVYITIRIVGQFISASYDK-DNLLISS 198 + ++ V + + + + + I + I + ++ DN +I Sbjct: 155 TESMIIKKEKNILDNVQLLEFYPVAVEDYEGTDKDSFWLYIKAKAIDYTINEEDNKVIEG 214 Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + + + W F+R WV K Sbjct: 215 YQSVSVEFEEYWKFIREEKS----WVADEIKQ 242 >gi|150017726|ref|YP_001309980.1| hypothetical protein Cbei_2878 [Clostridium beijerinckii NCIMB 8052] gi|149904191|gb|ABR35024.1| hypothetical protein Cbei_2878 [Clostridium beijerinckii NCIMB 8052] Length = 289 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 12/147 (8%), Positives = 41/147 (27%), Gaps = 7/147 (4%) Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143 N+ + I + + + ++ +++S +K + + Y Sbjct: 128 TNEFINTIKKDPKNISYAFLRSTVKEAFSKVIESLERMNFEMCQKYMSTEFYDGLQSQCK 187 Query: 144 TRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI--SASYDK-DNLLISSDP 200 + + + + ++ + V ++ D+ D ++ + Sbjct: 188 RYSFENIGRIIEELEFIEAEPVGLIHHHDSYKDIVWFVIKYNAKDYVVDETDGEILFGN- 246 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVLIS 227 + W F + W+L Sbjct: 247 NKVKEFEQYWKFQK---AEENTWLLSD 270 >gi|182626290|ref|ZP_02954046.1| putative membrane protein [Clostridium perfringens D str. JGS1721] gi|177908388|gb|EDT70930.1| putative membrane protein [Clostridium perfringens D str. JGS1721] Length = 273 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/148 (10%), Positives = 47/148 (31%), Gaps = 12/148 (8%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 ++++ ++ + +++ +I ++ + + +E L+ + +Y L K Sbjct: 103 KLKELALKDPYWNINYIKSVVEDTFYSIQYAWNDDEYERVESLLTTSLYNKHLKVLEELK 162 Query: 147 SNEKNVKSSLVGID----DMKIINASIEENTVYITIRIVGQFISASYDKDNL--LISSDP 200 S K + + + +++ + I + +I + Sbjct: 163 SENKKNVLEDIQFNGCRIISLFEGDEKQWGFIWVEVNF--SMIDYIVNTKGKRRIIEGND 220 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + W FV W+L + Sbjct: 221 NYSRSDFEYWKFVYIEN----TWLLSNI 244 >gi|168206873|ref|ZP_02632878.1| conserved hypothetical protein [Clostridium perfringens E str. JGS1987] gi|169341151|ref|ZP_02863244.1| conserved hypothetical protein [Clostridium perfringens C str. JGS1495] gi|169299758|gb|EDS81810.1| conserved hypothetical protein [Clostridium perfringens C str. JGS1495] gi|170661690|gb|EDT14373.1| conserved hypothetical protein [Clostridium perfringens E str. JGS1987] Length = 259 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 17/136 (12%), Positives = 48/136 (35%), Gaps = 3/136 (2%) Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 ++D ++ + + S+ I +++ ++ L+ + + Sbjct: 98 EAMSTLKDFEIENPAWNFYEIETQIEESFPLIQEAWMNRDYSPVKHLMTDNFFDTHTVKM 157 Query: 143 STRKSNEKNVKSSLVGIDDMKIINA--SIEENTVYITIRIVGQFISASYDKDNL-LISSD 199 + ++ S V + + I A + E +I + + + I + ++ N +I D Sbjct: 158 NWMLLKKEKNILSDVELKKVTPILAVENDENGEDFIWVLLKAKMIDYTINEKNNYIIDGD 217 Query: 200 PEIFGKVIDIWTFVRN 215 + W F+R Sbjct: 218 YATANSFEEFWKFIRK 233 >gi|153838005|ref|ZP_01990672.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] gi|149748613|gb|EDM59472.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] Length = 168 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 25/79 (31%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66 IL+ I F +F +RG+LG K G+ + SK ++ + + Sbjct: 90 GIQFMDILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNASKFEQPNMQNFEQQP 149 Query: 67 KKDNLDSINELFPIGTRLN 85 + N Sbjct: 150 NTNAGGFTGFGAQTDVPHN 168 >gi|168211468|ref|ZP_02637093.1| putative membrane protein [Clostridium perfringens B str. ATCC 3626] gi|170710549|gb|EDT22731.1| putative membrane protein [Clostridium perfringens B str. ATCC 3626] Length = 275 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 14/150 (9%), Positives = 47/150 (31%), Gaps = 12/150 (8%) Query: 85 NKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST 144 + ++++ ++ + +++ +I ++ + + +E L+ + +Y L Sbjct: 103 SNKLKELALKDPYWNINYIKSVVEDTFYSIQYAWNDDEYERVESLLTTSLYNKHLKVLEE 162 Query: 145 RKSNEKNVKSSLVGID----DMKIINASIEENTVYITIRIVGQFISASYDKDNL--LISS 198 KS K + + + +++ + + +I Sbjct: 163 LKSENKKNVLEDIQFNGCRIISLFEGDEKQWGFIWVEVNF--SMRDYIVNTKGKRRIIEG 220 Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + + W FV W+L + Sbjct: 221 NDNYSRSDFEYWKFVYIEN----TWLLSNI 246 >gi|330843779|ref|XP_003293823.1| hypothetical protein DICPUDRAFT_158742 [Dictyostelium purpureum] gi|325075809|gb|EGC29654.1| hypothetical protein DICPUDRAFT_158742 [Dictyostelium purpureum] Length = 268 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 58/209 (27%), Gaps = 16/209 (7%) Query: 33 KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIV 92 +T P + + + + + I Sbjct: 52 TRTAFNTPRRMKQNYFLQSTGAIFNEEVQPSLTSIITTPNKWYPYGKFIYQNITSHFVIK 111 Query: 93 SVYTDFD-----PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 S D + FL EA + + + +S +G H + +L + + Sbjct: 112 SKLKALDRTRYTKRAFLKEAEDMFIKVNESIADGNKHQLNELSSIQFGEVVEKKSGYLNR 171 Query: 148 NEKNVKSSLVGIDDMKI---------INASIEENTVYITIRIVGQFISASYDKDNLLISS 198 N+ I + +A + +G +DK N LIS Sbjct: 172 NKDLKFKWSCNITGKNLLWTRAGQIKTSAKSSTFFAQNCVEFIGTQSIQVFDKKNNLISE 231 Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227 + + K+ I F RN+ + W + S Sbjct: 232 NKDQPFKLEYI--FERNLASTPSMWRVCS 258 >gi|187777524|ref|ZP_02993997.1| hypothetical protein CLOSPO_01115 [Clostridium sporogenes ATCC 15579] gi|187774452|gb|EDU38254.1| hypothetical protein CLOSPO_01115 [Clostridium sporogenes ATCC 15579] Length = 268 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 58/161 (36%), Gaps = 8/161 (4%) Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 ++ +V+R + V + N +Y + +++ + ++ + + Sbjct: 99 TKISRKSKEAEEVIRRLKKVDMSYSKDMLQNRVEKTYFKMQEAWTSINLEISKEYMSEDI 158 Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKII--NASIEENTVYITIRIVGQFISASYDKD 192 Y+ N L+ + + + + + K + + + +I I G I + D+ Sbjct: 159 YKLHNSKLAWMEIRNQRNVLKNIKLLNAKPVGLEHYEDNSKDFIWFYIHGAMIDYTIDET 218 Query: 193 N-LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 +I + ++ W F++ N +WV+ + Sbjct: 219 TTQVIDGNTRN-SSFVEYWKFIK----KNDSWVVDLIMQED 254 >gi|168204988|ref|ZP_02630993.1| putative membrane protein [Clostridium perfringens E str. JGS1987] gi|170663519|gb|EDT16202.1| putative membrane protein [Clostridium perfringens E str. JGS1987] Length = 273 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 14/148 (9%), Positives = 46/148 (31%), Gaps = 12/148 (8%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 ++++ ++ + +++ +I ++ + + +E L+ + +Y L K Sbjct: 103 KLKELALKDPYWNINYIKSVVEDTFYSIQYAWNDDEYERVESLLTTSLYNKHIKVLEELK 162 Query: 147 SNEKNVKSSLVGID----DMKIINASIEENTVYITIRIVGQFISASYDKDNL--LISSDP 200 S K + + + +++ + + +I + Sbjct: 163 SENKKNVLEDIQFNGCRIISLFEGNEEQWGFIWVEVNF--SMKDYIVNTKGKRRVIEGND 220 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + W FV W+L + Sbjct: 221 NYSRSDFEYWKFVYIEN----TWLLSNI 244 >gi|254582268|ref|XP_002497119.1| ZYRO0D15840p [Zygosaccharomyces rouxii] gi|238940011|emb|CAR28186.1| ZYRO0D15840p [Zygosaccharomyces rouxii] Length = 407 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 49/156 (31%), Gaps = 8/156 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNS-YEAIVDSFFEGKVHAIEKLVDSRVYQDF 138 T KV+ + F + F + R+ +++++ +G ++K + + Sbjct: 242 AETETAKVIGQFKLLDPSFTSEGFTRQLRDYVIPEVLEAYAKGDEKTLKKWFSEAPFNVY 301 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFISASYD-KDNLL 195 + + S ++ I + I++A ++ + + Q I K + Sbjct: 302 AAQQKFFRDQKLFADSRILDIRGVDIVSAKLLPPQDIPVLIVGCRAQEIQLYRSIKSGEV 361 Query: 196 ISSDPEIFGKVIDIWTFVRNI----PPSNPNWVLIS 227 + F R+ W +I Sbjct: 362 AAGHESNILMSSYAMVFTRDPENVEDEETEGWRIIE 397 >gi|153938552|ref|YP_001389807.1| hypothetical protein CLI_0521 [Clostridium botulinum F str. Langeland] gi|152934448|gb|ABS39946.1| conserved hypothetical protein [Clostridium botulinum F str. Langeland] gi|295317894|gb|ADF98271.1| conserved hypothetical protein [Clostridium botulinum F str. 230613] Length = 263 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 59/161 (36%), Gaps = 8/161 (4%) Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 ++ K++R + +V + N +Y + +++ + ++ + + Sbjct: 94 PKISRKSKEAEKIIRRLKNVDISYSKDMLQNRVEKTYFKMQEAWTSLNLEISKEYMSEDI 153 Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKII--NASIEENTVYITIRIVGQFISASYDK- 191 Y+ N L+ + + + + + K + + + +I I G I + D+ Sbjct: 154 YKLHNSKLAWMEIRNQRNVLKNIKLLNAKPVGLEHYKDNSKDFIWFYIHGAMIDYTIDEI 213 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ++ + I+ W F++ N +WV+ + Sbjct: 214 TTQVVDGNTRN-SSFIEYWKFIK----KNDSWVVDLIMQED 249 >gi|170756915|ref|YP_001780090.1| hypothetical protein CLD_0307 [Clostridium botulinum B1 str. Okra] gi|169122127|gb|ACA45963.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra] Length = 263 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 59/161 (36%), Gaps = 8/161 (4%) Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 ++ K++R + +V + N +Y + +++ + ++ + + Sbjct: 94 PKISRKSKEAEKIIRRLKNVDISYSKDMLQNRVEKTYFKMQEAWTSLNLEISKEYMSEDI 153 Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKII--NASIEENTVYITIRIVGQFISASYDK- 191 Y+ N L+ + + + + + K + + + +I I G I + D+ Sbjct: 154 YKLHNSKLAWMEIRNQRNVLKNIKLLNAKPVGLEHYKDNSKDFIWFYIHGAMIDYTIDEI 213 Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232 ++ + I+ W F++ N +WV+ + Sbjct: 214 TTQVVDGNTRN-SSFIEYWKFIK----KNDSWVVDLIMQED 249 >gi|168212399|ref|ZP_02638024.1| putative membrane protein [Clostridium perfringens CPE str. F4969] gi|170716069|gb|EDT28251.1| putative membrane protein [Clostridium perfringens CPE str. F4969] Length = 273 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/148 (9%), Positives = 46/148 (31%), Gaps = 12/148 (8%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 ++++ ++ + +++ +I ++ + + +E L+ + +Y L K Sbjct: 103 KLKELALKDPYWNINYIKSVVEDTFYSIQYAWNDDEYERVESLLTTSLYNKHLKVLEELK 162 Query: 147 SNEKNVKSSLVGID----DMKIINASIEENTVYITIRIVGQFISASYDKDNL--LISSDP 200 S K + + + +++ + + +I + Sbjct: 163 SENKKNVLEDIQFNGCRIISLFEGNEKQWGFIWVEVNF--SMRDYIVNTKGKRMIIEGND 220 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + W FV W+L + Sbjct: 221 NYSRSDFEYWKFVYIEN----TWLLSNI 244 >gi|330937393|gb|EGH41378.1| import inner membrane translocase, subunit Tim44 [Pseudomonas syringae pv. pisi str. 1704B] Length = 179 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 35/116 (30%), Gaps = 24/116 (20%) Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58 +F+ F IL+ I F +F R + ++ + + + Y Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPPYQRETSQPAQ 140 Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114 G+ +++ F+ + FL+ AR + ++ Sbjct: 141 NPIF------------------GSSSPASAAPVINAPAWFNEQRFLDAARGHFPSL 178 >gi|213405048|ref|XP_002173296.1| mitochondrial import inner membrane translocase subunit [Schizosaccharomyces japonicus yFS275] gi|212001343|gb|EEB07003.1| mitochondrial import inner membrane translocase subunit [Schizosaccharomyces japonicus yFS275] Length = 428 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/139 (10%), Positives = 43/139 (30%), Gaps = 4/139 (2%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARN-SYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138 T ++V+ + F+ + F R + +++ +G A+ + + Sbjct: 263 SETEASQVVSRFKEIDPSFNSEVFQRYLREYIIPEVSEAYVKGDKEALRTWFSEAPFSVW 322 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASI--EENTVYITIRIVGQFISASYD-KDNLL 195 + + ++ I + I + + N + I Q + + K + Sbjct: 323 ETTTKEYAKHGVVSAGQVLDIRGVDIASYRMLQPNNIPVMVITFRTQEVHLFKNAKSGEV 382 Query: 196 ISSDPEIFGKVIDIWTFVR 214 ++ + + R Sbjct: 383 VAGRNDRIQQCTYAIVMTR 401 >gi|321259872|ref|XP_003194656.1| peripheral mitochondrial membrane protein; Tim44p [Cryptococcus gattii WM276] gi|317461128|gb|ADV22869.1| Peripheral mitochondrial membrane protein, putative; Tim44p [Cryptococcus gattii WM276] Length = 454 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 16/155 (10%), Positives = 45/155 (29%), Gaps = 7/155 (4%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138 +V+R + ++ +F + E R +VD++ +++ + Sbjct: 290 EENETAQVVRAMKALDPNFRMDRWTGELREYIVPEVVDAYLSADRESLKAWCGEATFNVL 349 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASI-EENTVYITIRIVG-QFISASYDKDNLLI 196 ++ S ++ I + I + + E N I + + K ++ Sbjct: 350 WATMGQFIKQGLVSDSKILDIKHVDIAHGKMLENNVPVFVITFATQEQLLFRSAKTGKVV 409 Query: 197 SSDPEIFGKVIDIWTFVRNIPPSN----PNWVLIS 227 + R + W ++ Sbjct: 410 VGSENDVEQCRYAMVITRLESELDNELTGGWKVVE 444 >gi|58268376|ref|XP_571344.1| import inner membrane translocase subunit tim44, mitochondrial precursor [Cryptococcus neoformans var. neoformans JEC21] gi|134112776|ref|XP_774931.1| hypothetical protein CNBF0960 [Cryptococcus neoformans var. neoformans B-3501A] gi|50257579|gb|EAL20284.1| hypothetical protein CNBF0960 [Cryptococcus neoformans var. neoformans B-3501A] gi|57227579|gb|AAW44037.1| import inner membrane translocase subunit tim44, mitochondrial precursor, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 454 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/155 (10%), Positives = 45/155 (29%), Gaps = 7/155 (4%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138 +V+R + ++ +F + E R +VD++ +++ + Sbjct: 290 EENETAQVIRAMKALDPNFRMDRWTGELREYIVPEVVDAYLSADRESLKAWCGEATFNVL 349 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASI-EENTVYITIRIVG-QFISASYDKDNLLI 196 ++ S ++ I + I + + E N I + + K ++ Sbjct: 350 WATMGQFIKQGLVSDSKILDIKHVDIAHGKMLENNIPVFVITFATQEQLLFRSAKTGKVV 409 Query: 197 SSDPEIFGKVIDIWTFVR----NIPPSNPNWVLIS 227 + + R W ++ Sbjct: 410 VGSEDDVEQCRYAMVITRLESELENELTGGWKVVE 444 >gi|168216168|ref|ZP_02641793.1| putative membrane protein [Clostridium perfringens NCTC 8239] gi|182381577|gb|EDT79056.1| putative membrane protein [Clostridium perfringens NCTC 8239] Length = 273 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 14/148 (9%), Positives = 46/148 (31%), Gaps = 12/148 (8%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 ++++ ++ + +++ +I ++ + + +E L+ + +Y L K Sbjct: 103 KLKELALKDPYWNINYIKSVVEDTFYSIQYAWNDDEYERVESLLTTSLYNKHLKVLEELK 162 Query: 147 SNEKNVKSSLVGID----DMKIINASIEENTVYITIRIVGQFISASYDKDNL--LISSDP 200 S K + + + +++ + + +I + Sbjct: 163 SENKKNVLEDIQFNGCRIISLFEGDEKQWGFIWVEVNF--SMKDYIVNTKGKRRIIEGND 220 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + W FV W+L + Sbjct: 221 NYSRSDFEYWKFVYIEN----TWLLSNI 244 >gi|227550990|ref|ZP_03981039.1| conserved hypothetical protein [Enterococcus faecium TX1330] gi|257896617|ref|ZP_05676270.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|227179890|gb|EEI60862.1| conserved hypothetical protein [Enterococcus faecium TX1330] gi|257833182|gb|EEV59603.1| conserved hypothetical protein [Enterococcus faecium Com12] Length = 254 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 100 PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159 FL + + I ++ E +++ + L K++ + + I Sbjct: 125 KAQFLE-IQKIFMKIQSAWEEETPEKARSCYTDKLFAEHQKVLQKNKADGVRNHTKKITI 183 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 ++ E + I I S KD +IS IW F + Sbjct: 184 QEVGNYRQIHENSF-AIRIDFRCCDYSVDR-KDGRVISGSKTQRQYFSQIWYF--DFSEK 239 Query: 220 NPNWVLISTK 229 W + Sbjct: 240 EKRWQADFIQ 249 >gi|293379681|ref|ZP_06625817.1| conserved hypothetical protein [Enterococcus faecium PC4.1] gi|292641679|gb|EFF59853.1| conserved hypothetical protein [Enterococcus faecium PC4.1] Length = 254 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 100 PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159 FL + + I ++ E +++ + L K++ + + I Sbjct: 125 KAQFLE-IQKIFMKIQSAWEEETPEKARSCYTDKLFAEHQKVLQKNKADGVRNHTKKITI 183 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 ++ E + I I S KD +IS IW F + Sbjct: 184 QEVGNYRQIHENSF-AIRIDFRCCDYSVDR-KDGRVISGSKTQRQYFSQIWYF--DFSEK 239 Query: 220 NPNWVLISTK 229 W + Sbjct: 240 EKRWQADFIQ 249 >gi|257893754|ref|ZP_05673407.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|257830133|gb|EEV56740.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] Length = 254 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 100 PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159 FL + + I ++ E +++ + L K++ + + I Sbjct: 125 KAQFLE-IQKIFMKIQSAWEEETPEKARSCYTDKLFAEHQKVLQKNKADGVRNHTKKITI 183 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 ++ E + I I S KD +IS IW F + Sbjct: 184 QEVGNYRQIHENSF-AIRIDFRCCDYSVDR-KDGRVISGSKTQRQYFSQIWYF--DFSEK 239 Query: 220 NPNWVLISTK 229 W + Sbjct: 240 EKRWQADFIQ 249 >gi|257900091|ref|ZP_05679744.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|293572221|ref|ZP_06683220.1| conserved hypothetical protein [Enterococcus faecium E980] gi|257838003|gb|EEV63077.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|291607680|gb|EFF37003.1| conserved hypothetical protein [Enterococcus faecium E980] Length = 254 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 39/131 (29%), Gaps = 7/131 (5%) Query: 100 PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159 FL + + I ++ E +++ + L K++ + V I Sbjct: 125 KAQFLE-IQKIFMKIQSAWEEETPEKARSCYTDKLFAEHQKVLQKNKADGVRNHTKKVTI 183 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYD-KDNLLISSDPEIFGKVIDIWTFVRNIPP 218 ++ + + IRI + D KD LIS IW F + Sbjct: 184 QEV---GNYRQIHENSFAIRIDFRCCDYLVDRKDGRLISGSTTQRQYFSQIWYF--DFSE 238 Query: 219 SNPNWVLISTK 229 W + Sbjct: 239 KEKRWQADFIQ 249 >gi|257888872|ref|ZP_05668525.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257824928|gb|EEV51858.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] Length = 254 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 100 PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159 FL + + I ++ E +++ + L K++ + + I Sbjct: 125 KAQFLE-IQKIFMKIQSAWEEETPEKARSCYTDKLFAEHQKVLQKNKADGVRNHTKKITI 183 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 ++ E + I I S KD +IS IW F + Sbjct: 184 QEVGNYRQIHENSF-AIRIDFRCCDYSVDR-KDGRVISGSKTQRQYFSQIWYF--DFSEK 239 Query: 220 NPNWVLISTK 229 W + Sbjct: 240 EKRWQADFIQ 249 >gi|331242860|ref|XP_003334075.1| hypothetical protein PGTG_15619 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309313065|gb|EFP89656.1| hypothetical protein PGTG_15619 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 319 Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 24/201 (11%), Positives = 67/201 (33%), Gaps = 11/201 (5%) Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93 K G +K G+++ ++ ++ + ++ + GT + Sbjct: 118 KVGWQKNRLKEAWGQWLGQRQSKQNVDSVLS-PGNPSWMKDFADEAYGTIILAHQTVTSG 176 Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ--DFNDSLSTRKSNEKN 151 + D K FL + ++V+ E + + S + + + K ++ Sbjct: 177 SFEDPQVKKFL------HPSMVEFLQEKRERLLRSYSPSHLITWTKHSPAPEAGKKGKQA 230 Query: 152 VKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWT 211 + I M+ V I +R D+ LL+ +++ + Sbjct: 231 QPEKELEIVAMRAAPFDQGGTVVQIAVRFKSLQSLEIRDERGLLVFGSHSKPQPIMEYFV 290 Query: 212 FVRNIPPSNPNWVLISTKLGE 232 F + + ++ ++ L+ + + Sbjct: 291 FQKRMGQTDQSFRLL--QQVD 309 >gi|320582288|gb|EFW96505.1| Peripheral mitochondrial membrane protein [Pichia angusta DL-1] Length = 412 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 15/156 (9%), Positives = 52/156 (33%), Gaps = 8/156 (5%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138 T +V++ + +F+ + + R +++++ G+ ++ + + Sbjct: 247 AETEGARVIKAFRELDPNFNTESLTKQLREYIVPEVLEAYITGEEKVLKTWLSEAPFNII 306 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASI---EENTVYITIRIVGQFISASYDKDNLL 195 + ++ + D++I+++ + + V++ V + K + Sbjct: 307 AAQQKQLRDQGLISDGRILDVRDVQIVSSRMLEPNQIPVFVVSARVQEVNLYRKAKTGEV 366 Query: 196 ISSDPEIFGKVIDIWTFVR-NIPPSNPN---WVLIS 227 ++ E R NP W ++ Sbjct: 367 VAGTEEDILLSAYALVITRVPEEIDNPETEGWKILE 402 >gi|66808087|ref|XP_637766.1| hypothetical protein DDB_G0286445 [Dictyostelium discoideum AX4] gi|60466184|gb|EAL64247.1| hypothetical protein DDB_G0286445 [Dictyostelium discoideum AX4] Length = 279 Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 12/141 (8%) Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD-FNDSLSTRKSNEKNVKSS 155 + K FL EA + + + EG + I + + F ++ + + Sbjct: 134 HYSKKKFLAEAEEMFNELGKAVAEGNKNDINDISTIQFSSVVFKNTGINDTNIKNYKTEW 193 Query: 156 LVGIDDMKII---------NASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206 I+ K+I S + G DK++ +ISS + K Sbjct: 194 NGKINSKKMIWSRAGQIKLTHSETSFFAQNCVEFTGTQSIIVKDKNDKVISSIEDQPFKS 253 Query: 207 IDIWTFVRNIPPSNPNWVLIS 227 + F RN+ W + S Sbjct: 254 EYV--FERNVSSLPSQWRIAS 272 >gi|108761631|ref|YP_631938.1| hypothetical protein MXAN_3756 [Myxococcus xanthus DK 1622] gi|108465511|gb|ABF90696.1| hypothetical protein MXAN_3756 [Myxococcus xanthus DK 1622] Length = 654 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 17/169 (10%), Positives = 53/169 (31%), Gaps = 14/169 (8%) Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119 K + ++ + + + F+ + L++ + + + ++F Sbjct: 101 PDATTRKALEQREAYQRTQVSQRDVQGWVNALKLKDPAFELEPMLDKTKWLFMELQQAWF 160 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179 + + + +Q F L ++ + + D+++I + I +R Sbjct: 161 LRDMTPVRPFLSDATFQRFGVQLELMRAQGVRDAITDFEVLDLQLIGLDQSQWFDSIHVR 220 Query: 180 IVGQFISASYDKDNLLISSDPEIFGK---------VIDIWTFVRNIPPS 219 + + ++ +S + ++WTFVR Sbjct: 221 VHARMRD-----TDVPVSFSDAQATEAARKVPSEAFTEVWTFVRKPGAQ 264 >gi|91228595|ref|ZP_01262513.1| hypothetical protein V12G01_00367 [Vibrio alginolyticus 12G01] gi|91187827|gb|EAS74141.1| hypothetical protein V12G01_00367 [Vibrio alginolyticus 12G01] Length = 148 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%) Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 IL+ I F +F +RG+LG K G+ + SK ++ + L Sbjct: 90 GIQFMDILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNLSNN 148 >gi|69245633|ref|ZP_00603546.1| conserved hypothetical protein [Enterococcus faecium DO] gi|257878966|ref|ZP_05658619.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257881592|ref|ZP_05661245.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257890819|ref|ZP_05670472.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|258615401|ref|ZP_05713171.1| hypothetical protein EfaeD_06778 [Enterococcus faecium DO] gi|293563655|ref|ZP_06678097.1| conserved hypothetical protein [Enterococcus faecium E1162] gi|293568492|ref|ZP_06679812.1| conserved hypothetical protein [Enterococcus faecium E1071] gi|294621140|ref|ZP_06700329.1| conserved hypothetical protein [Enterococcus faecium U0317] gi|314938609|ref|ZP_07845890.1| conserved hypothetical protein [Enterococcus faecium TX0133a04] gi|314943065|ref|ZP_07849867.1| conserved hypothetical protein [Enterococcus faecium TX0133C] gi|314948335|ref|ZP_07851725.1| conserved hypothetical protein [Enterococcus faecium TX0082] gi|314952097|ref|ZP_07855117.1| conserved hypothetical protein [Enterococcus faecium TX0133A] gi|314991963|ref|ZP_07857417.1| conserved hypothetical protein [Enterococcus faecium TX0133B] gi|314995098|ref|ZP_07860216.1| conserved hypothetical protein [Enterococcus faecium TX0133a01] gi|68195653|gb|EAN10092.1| conserved hypothetical protein [Enterococcus faecium DO] gi|257813194|gb|EEV41952.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257817250|gb|EEV44578.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257827179|gb|EEV53805.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|291588828|gb|EFF20656.1| conserved hypothetical protein [Enterococcus faecium E1071] gi|291599308|gb|EFF30336.1| conserved hypothetical protein [Enterococcus faecium U0317] gi|291604402|gb|EFF33894.1| conserved hypothetical protein [Enterococcus faecium E1162] gi|313590674|gb|EFR69519.1| conserved hypothetical protein [Enterococcus faecium TX0133a01] gi|313593473|gb|EFR72318.1| conserved hypothetical protein [Enterococcus faecium TX0133B] gi|313595773|gb|EFR74618.1| conserved hypothetical protein [Enterococcus faecium TX0133A] gi|313598210|gb|EFR77055.1| conserved hypothetical protein [Enterococcus faecium TX0133C] gi|313642065|gb|EFS06645.1| conserved hypothetical protein [Enterococcus faecium TX0133a04] gi|313645201|gb|EFS09781.1| conserved hypothetical protein [Enterococcus faecium TX0082] Length = 254 Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 100 PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159 FL + + I ++ E +++ + L K++ + + I Sbjct: 125 KAQFLE-IQKIFMKIQSAWEEETPEKARSCYTDKLFAEHQKVLQKNKADGVRNHTKKITI 183 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 ++ E + I I S KD LIS IW F + Sbjct: 184 QEVGNYRQIHENSF-AIRIDFRCCDYSVDR-KDGRLISGSKTQRQYFSQIWYF--DFSEK 239 Query: 220 NPNWVLISTK 229 W + Sbjct: 240 EKRWQADFIQ 249 >gi|110798932|ref|YP_695458.1| hypothetical protein CPF_1012 [Clostridium perfringens ATCC 13124] gi|110673579|gb|ABG82566.1| putative membrane protein [Clostridium perfringens ATCC 13124] Length = 273 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 15/148 (10%), Positives = 46/148 (31%), Gaps = 12/148 (8%) Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146 ++++ T ++ + +++ +I ++ + + +E L+ + +Y L K Sbjct: 103 KLKELALKDTYWNINYIKSVVEDTFYSIQYAWNDDEYERVESLLTTSLYNKHLKVLEELK 162 Query: 147 SNEKNVKSSLVGID----DMKIINASIEENTVYITIRIVGQFISASYDKDNL--LISSDP 200 S K + + +++ + + +I + Sbjct: 163 SENKKNVLEDIQFKGCRIISLFEGDEKQWGFIWVEVNF--SMRDYIVNTKGKRRVIEGND 220 Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVLIST 228 + W FV W+L + Sbjct: 221 NYSRSDFEYWKFVYIEN----TWLLSNI 244 >gi|256394912|ref|YP_003116476.1| import inner membrane translocase subunit Tim44 [Catenulispora acidiphila DSM 44928] gi|256361138|gb|ACU74635.1| import inner membrane translocase subunit Tim44 [Catenulispora acidiphila DSM 44928] Length = 448 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 71/222 (31%), Gaps = 27/222 (12%) Query: 12 LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71 ++L+ A I V+ + G G+++ L G + Sbjct: 65 VLLIVAVIVLIVWFAFKARSGNGVGSKR---------------------GLNTGSDRTAH 103 Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131 S T++ + + + P+ A Y ++ + +++++ Sbjct: 104 RSDAAAAQRATQIEARVAAVADNDPTYAPEALKARAVWLYTTAQRAWSDRDRAVLKQILS 163 Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISASY 189 +Y +++ L +S + +V ++++N + IT RI Sbjct: 164 PVLYVKWDEELRDYQSRGEINTVDIVSGPSVQMVNIANRAGEVNDTITFRITATLNDRVV 223 Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231 + V + WT ++ ++ W++ S + Sbjct: 224 RANGSHAVRKDGSTRPV-EYWTLRKD---ASGEWMVASIEQA 261 >gi|325118573|emb|CBZ54124.1| hypothetical protein NCLIV_045570 [Neospora caninum Liverpool] Length = 624 Score = 44.9 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 22/202 (10%), Positives = 62/202 (30%), Gaps = 20/202 (9%) Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELF-----PIGTRLNKVM 88 + G E+P + + + K+ L + E T + + Sbjct: 397 RPGEERPTPEEQREDALVLSQRTTWDRFSSRFKEMSFLQNFFENPLVAQLFGETEIAASI 456 Query: 89 RDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147 R++ + F D N IV +F G + + S+ R++ Sbjct: 457 REMKILDPKFKLGDLHNMMERVVAGHIVQAFLLGDEGTLAVHCAEGAFAALRASIIERRA 516 Query: 148 NEKNVKSSLVGIDDMKIINASIE-------------ENTVYITIRIVGQFISASYDK-DN 193 + + S ++ + +++++ A + + Q ++ + D Sbjct: 517 QKVRLDSEILQLGNVELVGARRSITPPICATANFSADECPWFVYTFTCQQVNCLRSEVDG 576 Query: 194 LLISSDPEIFGKVIDIWTFVRN 215 ++ + +V+ ++ Sbjct: 577 RVVEGREDDIRRVVYSVAVSKH 598 >gi|121582973|ref|YP_973415.1| hypothetical protein Pnap_4395 [Polaromonas naphthalenivorans CJ2] gi|120596235|gb|ABM39673.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2] Length = 146 Score = 44.9 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 11/123 (8%), Positives = 37/123 (30%), Gaps = 21/123 (17%) Query: 109 NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS 168 ++ ++ D G A+ ++ ++ + S+ + + + + + + + Sbjct: 45 EAFRSLQDFNSTGNKEALRRVTTPGMFAELEGSMGSPPLR--------ILVLNASVQDVT 96 Query: 169 IEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228 E + ++R + + ++W FV W L Sbjct: 97 EEPHQTVASVRY-----------TGEVTEG-VNPPEPIDEVWHFVLPRSSP-AVWQLAGI 143 Query: 229 KLG 231 + Sbjct: 144 EQV 146 >gi|257886221|ref|ZP_05665874.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] gi|257822077|gb|EEV49207.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] Length = 254 Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 100 PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159 FL + + I ++ E +++ + L K++ + + I Sbjct: 125 KAQFLE-IQKIFMKIQSAWEEETPEKARSCYTDKLFAEHQKVLQKSKADGVRNHTKKITI 183 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 ++ E + I I S KD LIS IW F + Sbjct: 184 QEVGNYRQIHENSF-AIRIDFRCCDYSVDR-KDGRLISGSKTQRQYFSQIWYF--DFSEK 239 Query: 220 NPNWVLISTK 229 W + Sbjct: 240 EKRWQADFIQ 249 >gi|294620173|ref|ZP_06699511.1| conserved hypothetical protein [Enterococcus faecium E1679] gi|291593579|gb|EFF25115.1| conserved hypothetical protein [Enterococcus faecium E1679] Length = 238 Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 100 PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159 FL + + I ++ E +++ + L K++ + + I Sbjct: 109 KAQFLE-IQKIFMKIQSAWEEETPEKARSCYTDKLFAEHQKVLQKNKADGVRNHTKKITI 167 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 ++ E + I I S KD LIS IW F + Sbjct: 168 QEVGNYRQIHENSF-AIRIDFRCCDYSVDR-KDGRLISGSKTQRQYFSQIWYF--DFSEK 223 Query: 220 NPNWVLISTK 229 W + Sbjct: 224 EKRWQADFIQ 233 >gi|328872023|gb|EGG20393.1| hypothetical protein DFA_07517 [Dictyostelium fasciculatum] Length = 535 Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 42/131 (32%), Gaps = 3/131 (2%) Query: 96 TDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKS 154 F+ FL A++ + ++ +F V +E +++ + ++ ++ K Sbjct: 390 PGFEFNKFLPIAKSKFIPEFLELYFANDVDGLEDFCGETLHKMLSGIIAANEAGHKVFDG 449 Query: 155 SLVGIDDMKIINASIEENTVYITIRI--VGQFISASYDKDNLLISSDPEIFGKVIDIWTF 212 +V ID + + + EN V D ++ K I Sbjct: 450 KIVKIDTLDFMGINESENREETYFSFLVVVHHTYCIRDYQFEIVEGGDHEIIKTQMIVHM 509 Query: 213 VRNIPPSNPNW 223 + + W Sbjct: 510 SVDTDLNEFGW 520 >gi|149921069|ref|ZP_01909528.1| hypothetical protein PPSIR1_09510 [Plesiocystis pacifica SIR-1] gi|149818073|gb|EDM77530.1| hypothetical protein PPSIR1_09510 [Plesiocystis pacifica SIR-1] Length = 506 Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 13/171 (7%), Positives = 44/171 (25%), Gaps = 2/171 (1%) Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113 R T + + + + + + ++ Sbjct: 288 RQRELKQTPPALGGYAPEVGNDRPTLVDPGFKRAIARLYEEDPALNRHTLEARVVYVFDV 347 Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173 + ++ + ++ Y + N ++ ++++ + + Sbjct: 348 LNAAWTARDLGPARGVLSEGQYDSLRYWIEAYHRNGLINVLEQPQVESIRLVKLVRDAHF 407 Query: 174 VYITIRIVGQFISASY--DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222 +T+R+ I + D + D + + WT +R P Sbjct: 408 DALTVRVFASSIDYTVRDDPRRTPVGGDRRRPRRYTEYWTLIRGAGVRGPT 458 >gi|163801175|ref|ZP_02195075.1| hypothetical protein 1103602000593_AND4_02893 [Vibrio sp. AND4] gi|159175524|gb|EDP60321.1| hypothetical protein AND4_02893 [Vibrio sp. AND4] Length = 230 Score = 42.6 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 16/158 (10%), Positives = 45/158 (28%), Gaps = 12/158 (7%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139 R K + + FD ++S+ + + + + + + L+ ++ Sbjct: 55 AEKRAFKDLAFMSHYSEHFDWLRIEQRVKDSFLRVHNGWQDEDLSDVSSLMTESYLRNQQ 114 Query: 140 DSLST-RKSNEKNVKSSLVGIDDMKIINASIEEN-----TVYITIRIVGQFISASY-DKD 192 K ++ I +K + + I + + + + Sbjct: 115 QVYLDKWKQKGLVNICNIKIIKQIKPLMVVHRNHKEGHRESTILVTVKAEMNDYLKHRET 174 Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 + + E + V +WTF + W + Sbjct: 175 GAISEGNEE-YKTVTTVWTFS----LVDDEWKVADINQ 207 >gi|221486633|gb|EEE24894.1| import inner membrane translocase subunit TIM44, putative [Toxoplasma gondii GT1] Length = 598 Score = 41.8 bits (96), Expect = 0.069, Method: Composition-based stats. Identities = 16/153 (10%), Positives = 49/153 (32%), Gaps = 15/153 (9%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAIEKLVDSRVYQDF 138 T + +R++ + F D N IV +F G + + Sbjct: 422 GETEIAASIREMKILDPKFKLADMHNMMERVIAAHIVQAFLLGDEGTLAVHCAEGAFAAM 481 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIE-------------ENTVYITIRIVGQFI 185 S+ R++ + + S ++ + +++++ A + + Q + Sbjct: 482 RASIIERRAQKVRLDSEILQLGNVELVGARRSLTPPICATQNFSADECPWFVYTFTCQQV 541 Query: 186 SASYDK-DNLLISSDPEIFGKVIDIWTFVRNIP 217 + + D ++ + +V+ ++ Sbjct: 542 NCLRSEVDGRVVEGREDDIRRVVYSIAVSKHPK 574 >gi|322509115|gb|ADX04569.1| putative exported protein [Acinetobacter baumannii 1656-2] Length = 78 Score = 41.8 bits (96), Expect = 0.077, Method: Composition-based stats. Identities = 8/84 (9%), Positives = 28/84 (33%), Gaps = 12/84 (14%) Query: 148 NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 ++ + + +++++ E +++R + + Sbjct: 7 ENQDQDVAEFSNLNAMVVDSATENGQYIVSVRF-----------TGTVSEDLNSLPQPFT 55 Query: 208 DIWTFVRNIPPSNPNWVLISTKLG 231 +IW FV+ + +WV+ + Sbjct: 56 EIWHFVKPVGSQQ-DWVVAGIQQA 78 >gi|237834217|ref|XP_002366406.1| mitochondrial import inner membrane translocase TIM44, putative [Toxoplasma gondii ME49] gi|211964070|gb|EEA99265.1| mitochondrial import inner membrane translocase TIM44, putative [Toxoplasma gondii ME49] Length = 598 Score = 41.8 bits (96), Expect = 0.084, Method: Composition-based stats. Identities = 16/153 (10%), Positives = 49/153 (32%), Gaps = 15/153 (9%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAIEKLVDSRVYQDF 138 T + +R++ + F D N IV +F G + + Sbjct: 422 GETEIAASIREMKILDPKFKLADMHNMMERVIAAHIVQAFLLGDEGTLAVHCAEGAFAAM 481 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIE-------------ENTVYITIRIVGQFI 185 S+ R++ + + S ++ + +++++ A + + Q + Sbjct: 482 RASIIERRAQKVRLDSEILQLGNVELVGARRSLTPPICATQNFSADECPWFVYTFTCQQV 541 Query: 186 SASYDK-DNLLISSDPEIFGKVIDIWTFVRNIP 217 + + D ++ + +V+ ++ Sbjct: 542 NCLRSEVDGRVVEGREDDIRRVVYSIAVSKHPK 574 >gi|221508389|gb|EEE33976.1| mitochondrial import inner membrane translocase TIM44, putative [Toxoplasma gondii VEG] Length = 598 Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 16/153 (10%), Positives = 49/153 (32%), Gaps = 15/153 (9%) Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAIEKLVDSRVYQDF 138 T + +R++ + F D N IV +F G + + Sbjct: 422 GETEIAASIREMKILDPKFKLADMHNMMERVIAAHIVQAFLLGDEGTLAVHCAEGAFAAM 481 Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIE-------------ENTVYITIRIVGQFI 185 S+ R++ + + S ++ + +++++ A + + Q + Sbjct: 482 RASIIERRAQKVRLDSEILQLGNVELVGARRSLTPPICATQNFSADECPWFVYTFTCQQV 541 Query: 186 SASYDK-DNLLISSDPEIFGKVIDIWTFVRNIP 217 + + D ++ + +V+ ++ Sbjct: 542 NCLRSEVDGRVVEGREDDIRRVVYSIAVSKHPK 574 >gi|281207677|gb|EFA81857.1| hypothetical protein PPL_05089 [Polysphondylium pallidum PN500] Length = 268 Score = 41.1 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 27/203 (13%), Positives = 58/203 (28%), Gaps = 12/203 (5%) Query: 32 GKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDI 91 G++ KP S VF I++ + G+ + Sbjct: 59 GRRI---KPNIFVQSPGQVFENAMPSPIVSTLLSPSLWFDQAKYYYKTFGSYSMIKSKLK 115 Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA------IEKLVDSRVYQDFNDSLSTR 145 F K FL E++ Y + + G + ++ ++ S+ Sbjct: 116 KLTDEKFTVKQFLEESKEKYTKLNQTMLSGNIDKDITTIYFHSVLSTQFKSQPKYIKSSW 175 Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD-KDNLLISSDPEIFG 204 + K+ +K + E I + G + D ++ + + Sbjct: 176 SAELNKPKAIWSRSGQIKTSLSGDTEFFAQICVEFSGTQSMSLVDTRNGTTL--SEAVNV 233 Query: 205 KVIDIWTFVRNIPPSNPNWVLIS 227 DI+ F R + W + + Sbjct: 234 PFKDIYVFERCLSSLPSEWKICA 256 >gi|328863140|gb|EGG12240.1| hypothetical protein MELLADRAFT_73983 [Melampsora larici-populina 98AG31] Length = 318 Score = 41.1 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 28/74 (37%) Query: 152 VKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWT 211 K + + I M+ V I +R D+ LL+S E V++ + Sbjct: 230 PKETEMEIVTMRAAPFDKGGTVVQIAVRFRTYQSLEVRDECGLLVSGSHESPQLVMEYFV 289 Query: 212 FVRNIPPSNPNWVL 225 F + + N ++L Sbjct: 290 FQKRMSMVNQPFLL 303 >gi|307185468|gb|EFN71468.1| Uncharacterized protein C2orf47-like protein, mitochondrial [Camponotus floridanus] Length = 178 Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 50/164 (30%), Gaps = 7/164 (4%) Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + + L P+ +R + +FD +FL A+ + I + ++ Sbjct: 4 DQAPAHVPSLLTPLKLLYLSTLRIAPYIDKEFDIAEFLKGAKYATAIISKALTNKNYDSL 63 Query: 127 EKLVDSRVYQDFNDSLSTR--KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 + LV + + + T + + M + I I + + Sbjct: 64 QGLVTEDMIEILRAKIETLSPNQRQLIAVDETDMLFYMLSDIDATVGEEHSIKITTICHY 123 Query: 185 ISASYDKDNL-LISSDPEIFGKVIDIW---TFVRN-IPPSNPNW 223 I +K N ++S + + TF R I W Sbjct: 124 IQGLAEKKNKMMMSGLIDFTTSTKHLVCNYTFTRKYINNIGGPW 167 >gi|332140272|ref|YP_004426010.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550294|gb|AEA97012.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str. 'Deep ecotype'] Length = 959 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 59/200 (29%), Gaps = 20/200 (10%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 I+L A I F+F+ L V T E+ S + E +L D Sbjct: 253 IVLLAMIAGFIFIILHMVSMTGTLAERTLSKLY----------EDIKNSLNSNSNAPLRD 302 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + + K ++ T+ + + N E++ D + E L+ + Sbjct: 303 DQQLEAQELSDIRKAFDKLIWDLTEVSLSN--EQFSNVLESMGDMLVVVDQNQ-EVLLSN 359 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 + + DF D K +G + R V ++ D + Sbjct: 360 KRFDDFCDDQYGEKQGILKFIMQKLGATQSNELKHFSVSTGQE---RFVRWTKTSLADAN 416 Query: 193 NLLIS----SDPEIFGKVID 208 + E + ++ Sbjct: 417 GNIRGDIFVGSDETEQRSLE 436 >gi|327404559|ref|YP_004345397.1| hypothetical protein Fluta_2575 [Fluviicola taffensis DSM 16823] gi|327320067|gb|AEA44559.1| hypothetical protein Fluta_2575 [Fluviicola taffensis DSM 16823] Length = 483 Score = 39.5 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 64/204 (31%), Gaps = 24/204 (11%) Query: 15 LFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSI 74 + I V L + +L K+ + ++T KG Sbjct: 53 IPGLIGLAVVLIIYFILRKR------------LGLGSGSGSKSSLMTGLKGAMSGGGIGG 100 Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134 I ++ D + + S+ A+ ++ E + + K + V Sbjct: 101 ALSAVIAKDFTGASTVGNKLFPDGLTE---EKVSTSFMALQAAWEEQDLSKVRKWMSDGV 157 Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF----ISASYD 190 YQ F K ++ S V I D+ +++ + I I IS Y Sbjct: 158 YQRFTAQFIMMKQLTQSNTLSNVRIKDVSVMDIRTDGEYQSADISITFSMDDRFISEKYP 217 Query: 191 KDNLLISSDPEIFGKVIDIWTFVR 214 + N D + +IWTF++ Sbjct: 218 ELNESYKGDSD-----TEIWTFIK 236 >gi|330898718|gb|EGH30137.1| import inner membrane translocase, subunit Tim44 [Pseudomonas syringae pv. japonica str. M301072PT] Length = 135 Score = 39.5 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 7/55 (12%), Positives = 19/55 (34%), Gaps = 7/55 (12%) Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSK 53 +F+ F IL+ I F+ + + ++ ++P ++ Sbjct: 84 MFMGDGFNGLQLFDILIMGLIA-FLIFR---FMARRRQQQQPKMAAAGAPPYQTE 134 >gi|322703773|gb|EFY95377.1| hypothetical protein MAA_09191 [Metarhizium anisopliae ARSEF 23] Length = 434 Score = 39.1 bits (89), Expect = 0.42, Method: Composition-based stats. Identities = 13/101 (12%), Positives = 23/101 (22%), Gaps = 2/101 (1%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 + + LI + + F+F + R + F G L Sbjct: 270 AAIGTAVPLIFIALALAAFIFYRRRNRSKTRAEAASEQGSGFPGMNKPELDATPSPFALS 329 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFL 104 G + + P R S F+ Sbjct: 330 LGPGSELDGTPRPSPPGDDSTAAGGRV--SELPGPGVARFV 368 >gi|196231899|ref|ZP_03130755.1| Tetratricopeptide TPR_2 repeat protein [Chthoniobacter flavus Ellin428] gi|196224021|gb|EDY18535.1| Tetratricopeptide TPR_2 repeat protein [Chthoniobacter flavus Ellin428] Length = 463 Score = 39.1 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 20/209 (9%), Positives = 48/209 (22%), Gaps = 24/209 (11%) Query: 13 ILLFAFITFFVF----------LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62 IL+ A I V + LR L ++ ++ + + R+ + Sbjct: 30 ILIIAGIALAVIADLGAGVGGVMFLRKFLQRRVEQQRKPDHIITDRTRRIARNPNDVRAY 89 Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122 + + NK + + + ++ + YE + Sbjct: 90 KDRAQARTDTGDYD--GAIADYNKALELDPKDAHLYTWRAYVRNLQFRYEDAIAD----- 142 Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182 + D + + + A G Sbjct: 143 -------CTKAITIDAKLPPAYSNRGYARRHEGDLAGSLADLNRAIELSPKTAAVYSSRG 195 Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWT 211 + D + + + I + D W Sbjct: 196 ETKYEQRDYEGAVADYNQAITLQPNDKWH 224 >gi|289677453|ref|ZP_06498343.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. syringae FF5] Length = 133 Score = 38.8 bits (88), Expect = 0.57, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 6/53 (11%) Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF 51 +F+ F IL+ I F +F R + ++ + + + Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPPSPR 133 >gi|154503009|ref|ZP_02040069.1| hypothetical protein RUMGNA_00831 [Ruminococcus gnavus ATCC 29149] gi|153796363|gb|EDN78783.1| hypothetical protein RUMGNA_00831 [Ruminococcus gnavus ATCC 29149] Length = 676 Score = 38.0 bits (86), Expect = 1.0, Method: Composition-based stats. Identities = 12/98 (12%), Positives = 31/98 (31%), Gaps = 1/98 (1%) Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI- 178 + + + F + + ++ S L I D + + ++ YI I Sbjct: 578 NQYGKGYAYYICTDAEELFYHDFYAKILAKHHIHSILNTIPDGIEVTSRTDDEYEYIFIQ 637 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216 + I+ K +I + + + F + + Sbjct: 638 NFSYRNINIVLPKKGDIIYGNKNGNIRQYETIVFRKKL 675 >gi|118398965|ref|XP_001031809.1| hypothetical protein TTHERM_00723310 [Tetrahymena thermophila] gi|89286143|gb|EAR84146.1| hypothetical protein TTHERM_00723310 [Tetrahymena thermophila SB210] Length = 267 Score = 37.6 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 17/140 (12%), Positives = 44/140 (31%), Gaps = 9/140 (6%) Query: 93 SVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNV 152 D + + + + + K ++ ++ + F ++ ++ K + Sbjct: 105 KDEDGEDLNIKNQQVSQFVQNQIINATQYKEIDMKIML--EAHGVFGARINREENVGKVM 162 Query: 153 KSSLVGIDDMKIINASIEENTVY-----ITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207 + +N S N + + + D+D LI + + ++ Sbjct: 163 ELRGRLSSRSYFVNFSNLMNLYHNQILSLNVYFQTTRRLYVTDEDGDLIHGEDTLNKEIS 222 Query: 208 DIWTFVRNIPPSNPNWVLIS 227 +W F N +WVL Sbjct: 223 HVWRFE--TYTPNFDWVLTD 240 >gi|308495169|ref|XP_003109773.1| CRE-SMA-9 protein [Caenorhabditis remanei] gi|308245963|gb|EFO89915.1| CRE-SMA-9 protein [Caenorhabditis remanei] Length = 2426 Score = 37.6 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 53/182 (29%), Gaps = 7/182 (3%) Query: 30 VLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMR 89 V GKK EK + + + P + K MR Sbjct: 785 VCGKKREFEKAQQAAAENNPHSALKRRHTHQDATFAMNSPLAAATPSSMPGPSEPVKKMR 844 Query: 90 DIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNE 149 S D P + R+S+ + +E + + L + F + + Sbjct: 845 KEDSFDDDNSPST-SDGTRSSFPKSLPKEWEKHMLTLNNLAS--IIPPFVQAFLAKAIQS 901 Query: 150 KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDI 209 + + S G +I + + Q + + +I+ +++ + + Sbjct: 902 ETLTLS-PGALQHIYDKYNISPIAIQQFLHFASQLNNRQLE---EIIAECEKLYLRNAEE 957 Query: 210 WT 211 WT Sbjct: 958 WT 959 >gi|293557004|ref|ZP_06675564.1| conserved hypothetical protein [Enterococcus faecium E1039] gi|291600824|gb|EFF31116.1| conserved hypothetical protein [Enterococcus faecium E1039] Length = 138 Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 100 PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159 FL + + I ++ E +++ + L K++ + + I Sbjct: 9 KAQFLE-IQKIFMKIQSAWEEETPEKARSCYTDKLFAENQKVLQKNKADGVRNHTKKITI 67 Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219 ++ E + I I S KD LIS IW F + Sbjct: 68 QEVGNYRQIHENSF-AIRIDFRCCDYSVDR-KDGRLISGSKIQRQYFSQIWYF--DFSEK 123 Query: 220 NPNWVLISTK 229 W + Sbjct: 124 EKRWQADFIQ 133 >gi|282164810|ref|YP_003357195.1| hypothetical protein MCP_2140 [Methanocella paludicola SANAE] gi|282157124|dbj|BAI62212.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 183 Score = 37.2 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 12/110 (10%), Positives = 35/110 (31%), Gaps = 3/110 (2%) Query: 1 MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60 MV + +G ++ + A + ++ ++L +G+ +G E + Sbjct: 1 MVEVFGMTGMIVLAVLALVAIYILMRL---MGRPSGEEGEQDEVPASPAEKRPAMISDED 57 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNS 110 + D++ L + + + ++F + R Sbjct: 58 FIESYTGPMMEDALETLEEAVDSVRAGLEYYQRSAWEAAGEEFHSAVRGI 107 >gi|298346053|ref|YP_003718740.1| hypothetical protein HMPREF0573_10927 [Mobiluncus curtisii ATCC 43063] gi|298236114|gb|ADI67246.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 43063] Length = 396 Score = 37.2 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 13/101 (12%), Positives = 28/101 (27%), Gaps = 4/101 (3%) Query: 9 GDFLILLFAFITFFVFLQLRGVLGKK---TGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65 F IL+ A I + + ++ K T +P + G+ F + + Sbjct: 229 PLFSILIVAGIVILIVVLVKKSKAKANPVTQFGQPMNYGQPGQPQFGQPTQPQPFAQPGQ 288 Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF-DPKDFLN 105 + + + + + F P F Sbjct: 289 PQPFMQPGQPAPTQSFAQPSAGQPAVQTSQPQFGQPNPFAQ 329 >gi|149183746|ref|ZP_01862153.1| YqhP [Bacillus sp. SG-1] gi|148848546|gb|EDL62789.1| YqhP [Bacillus sp. SG-1] Length = 133 Score = 37.2 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 23/82 (28%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+FA I ++ R V+ G +K F KR + + N Sbjct: 46 ILIFAAIAGVIYFVFRKVMMGGKGKDKDQKAFLKAAKQSKKRYNKKTAAVKTKASAPNPF 105 Query: 73 SINELFPIGTRLNKVMRDIVSV 94 V+ + Sbjct: 106 RKKSHRKKSQANLTVIEGKKNR 127 >gi|30686091|ref|NP_194050.2| CRK11 (CYSTEINE-RICH RLK11); kinase/ protein kinase [Arabidopsis thaliana] gi|152013437|sp|Q9ZP16|CRK11_ARATH RecName: Full=Cysteine-rich receptor-like protein kinase 11; Short=Cysteine-rich RLK11; AltName: Full=Receptor-like protein kinase 3; Flags: Precursor gi|332659320|gb|AEE84720.1| cysteine-rich receptor-like protein kinase 11 [Arabidopsis thaliana] Length = 667 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 26/196 (13%), Positives = 57/196 (29%), Gaps = 9/196 (4%) Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 IL+ + F +F + + KT +E S S Y F + K + Sbjct: 299 VIAILILLVLGFVLFRRRKSYQRTKTESESDISTTDSLVYDFKTIEAATNKFSTSNKLGE 358 Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA--------RNSYEAIVDSFFEG 121 + + ++ + + ++F NEA RN + Sbjct: 359 GGFGAVYKGKLSNGTDVAVKRLSKK-SGQGTREFRNEAVLVTKLQHRNLVRLLGFCLERE 417 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181 + I + V ++ F + + + ++G I+ + I + Sbjct: 418 EQILIYEFVHNKSLDYFLFDPEKQSQLDWTRRYKIIGGIARGILYLHQDSRLKIIHRDLK 477 Query: 182 GQFISASYDKDNLLIS 197 I D + + Sbjct: 478 ASNILLDADMNPKIAD 493 >gi|237721808|ref|ZP_04552289.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229448677|gb|EEO54468.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 508 Score = 36.8 bits (83), Expect = 2.3, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 71/230 (30%), Gaps = 19/230 (8%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKK--TGNEKPFSGFFSGKYVFSKRDERGII 60 +I + +++L A + + LR + G + + K + K F + + Sbjct: 252 YIIIGLCVLVVILVAGLAILAAILLRFIAGNRKLKKSVKIANEHNELKTKFIQNISSQME 311 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI----VD 116 + + + +++ + + D L + + V Sbjct: 312 PTLNTLATSANELLQKAPQEASQMQSQVAALKKFSDDIQELSSLENSLTELYELGEINVG 371 Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F E + +++ + V N K+N++ ++ L+ + NA+ I Sbjct: 372 TFCENVMDKVKEHIKIDVTPSVNAPKLQVKTNKEQLERILLYLLR----NAAFYTEQGRI 427 Query: 177 TIRI-----VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP 221 ++ + + IF ++ +++ + Sbjct: 428 SLEFKKRGAHTHQFIVTDTGIGIPAEQQENIFKPFTEV----KDLTTGDG 473 >gi|323716895|gb|AAN39805.2| glycoprotein B [Saimiri sciureus lymphocryptovirus 2] Length = 354 Score = 36.8 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 1/120 (0%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 IL+ A I VFL + + ++ ++P + G ++ +RG ++ K+ Sbjct: 230 ILIMAAIALVVFLVIYLLKQHRSMTQQPIQFLYPGIQSLTQSQQRGETSVTPVSKEQLDA 289 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + L+ + K R + P+ L AR + + + + L+ Sbjct: 290 IMLALYEQTQQTQKQHRREATPPASSFPRKALEAARRRLP-LGKRKADEESEHRQPLLTH 348 >gi|265767422|ref|ZP_06095088.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263252727|gb|EEZ24239.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 517 Score = 36.8 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 71/226 (31%), Gaps = 11/226 (4%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKK--TGNEKPFSGFFSGKYVFSKRDERGII 60 ++ + +++L A + F V + LR + G + + + + K F + + Sbjct: 261 YMIVGLCTLVVILIAGLIFVVIVLLRFIAGNRKLKKSVQIANEHNELKTQFIQNISAQME 320 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR----NSYEAIVD 116 + ++ ++ + + D L + E V+ Sbjct: 321 PTLDTLASSAAELSDKAPQQAQQMQGQVAALKKFSNDIQELSTLENSLTEPYEMKEINVN 380 Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F E + +++ V V N + K+N + ++ L+ + + + Sbjct: 381 TFCEATMDKVKEFVQPEVSTVVNAAKLQIKTNPEQLERILIHLLKNAAEYTESGKIFLDF 440 Query: 177 TIR-IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP 221 R S + + +F +I +++ + Sbjct: 441 KKRGAHTHQFIISDTGTGIPVEKQENLFKPFTEI----KDLTEGDG 482 >gi|196001951|ref|XP_002110843.1| hypothetical protein TRIADDRAFT_54172 [Trichoplax adhaerens] gi|190586794|gb|EDV26847.1| hypothetical protein TRIADDRAFT_54172 [Trichoplax adhaerens] Length = 302 Score = 36.4 bits (82), Expect = 2.9, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 40/135 (29%) Query: 42 SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPK 101 S + + + +N ++ ++ T++ V + DF Sbjct: 56 SKHYFATTFNANLQHHRLFVNRTSPNLNNDNNRSDNPAGETKIVTVDLAGRVLGHDFSKD 115 Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDD 161 FL A + + I D+ IE L+ +T ++++ L Sbjct: 116 SFLEGANQAMKMICDAISTDDYSRIEDLLSPEAKASAKQCKTTLDRRGWDIRNILNYNGQ 175 Query: 162 MKIINASIEENTVYI 176 + + + I Sbjct: 176 PLTQIFRVFPSIITI 190 >gi|294651141|ref|ZP_06728476.1| taurine ABC superfamily ATP binding cassette transporter, substrate-binding protein [Acinetobacter haemolyticus ATCC 19194] gi|292822973|gb|EFF81841.1| taurine ABC superfamily ATP binding cassette transporter, substrate-binding protein [Acinetobacter haemolyticus ATCC 19194] Length = 346 Score = 36.4 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 26/227 (11%), Positives = 63/227 (27%), Gaps = 22/227 (9%) Query: 14 LLFAFITFFVFLQ----LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 ++ I F+ Q + VL K N K + +K + + Sbjct: 20 IVLVAIVAFIVYQNQKDVASVLSK---NNKAVVIAYQTGVDPTKVAQANGDYERDSGQAI 76 Query: 70 NLDSINELFPIGTRLNKVMRDI---------VSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 + + L I + D + FL A+ + + Sbjct: 77 QWRKFDAGSDVVNALASGDVVIGNIGSSPLAAAASRDLPIEVFLATAKLGGSEALVVSDK 136 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTR---KSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 + + L+ + F + +++ S V I +++ + I Sbjct: 137 SGIKTPKDLIGKTIAVPFVSTTHYSLLSALQHWDIEDSQVKIINLRPPEITAAWERGDID 196 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFG---KVIDIWTFVRNIPPSNP 221 V + + +++ ++ D+W ++ NP Sbjct: 197 ATYVWEPALSKVKASGHVLTDSKQVGEWGAPTYDLWVVRKDFAEKNP 243 >gi|218506541|ref|ZP_03504419.1| hypothetical protein RetlB5_02514 [Rhizobium etli Brasil 5] Length = 22 Score = 36.4 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 212 FVRNIPPSNPNWVLISTKL 230 F R+ +PNW L++T+ Sbjct: 1 FARDTRSRDPNWKLVATES 19 >gi|327260776|ref|XP_003215209.1| PREDICTED: uncharacterized protein C2orf47 homolog, mitochondrial-like [Anolis carolinensis] Length = 257 Score = 36.4 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 48/152 (31%), Gaps = 18/152 (11%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN--- 151 +F +F A+ ++ + + K +E+LV + Q + LS N ++ Sbjct: 101 DQEFSIHEFTEGAKQAFAHVSRLIAQCKYDLLEELVSKEMVQILKEKLSLLSENHRSALA 160 Query: 152 ---VKSSLVGIDDMKIINASIEENTVYITIRI----VGQFISASYDKDN--LLISSDPEI 202 + D+ I V I +R + D ++ D E Sbjct: 161 ADMDEIMYTTAGDVGIYYDDSGRKFVSILMRFWYLTSADLPDETPDGTKVFQVVFGD-EA 219 Query: 203 FGKVIDIWT----FVRNIPPS-NPNWVLISTK 229 + + T F R P+W + + Sbjct: 220 SKETKRLLTANYEFRREFTQGVKPDWTITRIE 251 >gi|169629386|ref|YP_001703035.1| putative membrane protein, MmpS [Mycobacterium abscessus ATCC 19977] gi|169241353|emb|CAM62381.1| Putative membrane protein, MmpS [Mycobacterium abscessus] Length = 133 Score = 36.4 bits (82), Expect = 3.1, Method: Composition-based stats. Identities = 9/79 (11%), Positives = 28/79 (35%), Gaps = 4/79 (5%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK-D 69 +++L I F ++RG+ G ++ P + + + + + Sbjct: 1 MVMVLVLVIAGFAVWRIRGIFGS---HQLPTYAGSMTDDKNNSKPKHVLYEIFGPPGTIA 57 Query: 70 NLDSINELFPIGTRLNKVM 88 +++ I++ V+ Sbjct: 58 DINYIDKEGEPHQINGAVL 76 >gi|116511408|ref|YP_808624.1| hypothetical protein LACR_0635 [Lactococcus lactis subsp. cremoris SK11] gi|116107062|gb|ABJ72202.1| hypothetical protein LACR_0635 [Lactococcus lactis subsp. cremoris SK11] Length = 158 Score = 36.4 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 14/125 (11%), Positives = 40/125 (32%), Gaps = 2/125 (1%) Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148 + + E + + +++ + + ++ ++Y+ L ++ Sbjct: 20 KRDYHQEKTINDPALAQEIEEIFLNVQEAWDKQDLQSLSPFYGDQLYEKHQKVLEKMRNK 79 Query: 149 EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208 + + I D I++N + + V S D +IS + + + Sbjct: 80 G-QINHTRSAILDGITRYKEIKDNQFEVDLYFVAIDYLVSID-SGQIISGNNQYRREFKQ 137 Query: 209 IWTFV 213 W F Sbjct: 138 RWNFS 142 >gi|154319085|ref|XP_001558860.1| hypothetical protein BC1G_02494 [Botryotinia fuckeliana B05.10] gi|150856925|gb|EDN32117.1| hypothetical protein BC1G_02494 [Botryotinia fuckeliana B05.10] Length = 496 Score = 36.4 bits (82), Expect = 3.2, Method: Composition-based stats. Identities = 17/213 (7%), Positives = 54/213 (25%), Gaps = 31/213 (14%) Query: 1 MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60 +++ + G I++F I + ++L + EK + ++ G + Sbjct: 181 IMYAGLGYGSLFIVMFILIAIDIVMRLFMI-------EKKVAARLKKDKTVAETHTYGTL 233 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 + T ++ + D K ++ + Sbjct: 234 QQSVDNAIFEQQYPSTPSTSNTASEPLLVSNQNQPPPADNK------KHPIALVTLLKSP 287 Query: 121 GKVHAIEK-LVDSRVYQDFNDSLSTRKSNEKNVKSS-------------LVGIDDMKIIN 166 + V + F+ +L + N S+ + ++ + Sbjct: 288 RIWADLYGVWVTVFLLASFDAALPIFVQRKFNWDSTGAGLIFLAITFPIFLAPIAGRLSD 347 Query: 167 ASIEE----NTVYITIRIVGQFISASYDKDNLL 195 + I+ + + + + Sbjct: 348 VWPSRWLTASYFIISAVFTVLLVLIHRNSTDQI 380 >gi|163915247|ref|NP_001106589.1| hypothetical protein LOC100127804 [Xenopus (Silurana) tropicalis] gi|160773565|gb|AAI55415.1| LOC100127804 protein [Xenopus (Silurana) tropicalis] Length = 304 Score = 36.4 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 20/152 (13%), Positives = 56/152 (36%), Gaps = 18/152 (11%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN--- 151 +F+ ++F + A+ ++ + + K A++ L+ + +D + S+ N +N Sbjct: 148 DREFNIEEFTDGAKQAFTLVSKLLSQCKFDALQNLISGELLEDIKEKCSSLSDNHRNALA 207 Query: 152 -VKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL--------ISSDPEI 202 ++ + + +++I + +++ + D+ L I D Sbjct: 208 AHLDEIMYTTTGDVAIYYDDNGRKFVSILMRFWYLTCAELPDDSLEGTKVFQFIMGDENT 267 Query: 203 FGKVIDIWT----FVRNIPPS-NPNWVLISTK 229 + T F R P+W++ + Sbjct: 268 -KNTKRLLTANYEFRREFTQGVTPDWIITRIE 298 >gi|169628228|ref|YP_001701877.1| membrane protein MmpS [Mycobacterium abscessus ATCC 19977] gi|169240195|emb|CAM61223.1| Probable membrane protein, MmpS [Mycobacterium abscessus] Length = 133 Score = 36.4 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 8/77 (10%), Positives = 25/77 (32%), Gaps = 3/77 (3%) Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 +++L I F ++RG+ G ++ P + + + + + Sbjct: 1 MVMVLVLVIAGFAVWRIRGIFGS---HQLPTYAGSMTDDKNNSKPKHVLYEIFGPPGTIA 57 Query: 71 LDSINELFPIGTRLNKV 87 + + ++N Sbjct: 58 DINYIDKEGEPHQINGA 74 >gi|226952052|ref|ZP_03822516.1| ABC taurine transport system, periplasmic component [Acinetobacter sp. ATCC 27244] gi|226837209|gb|EEH69592.1| ABC taurine transport system, periplasmic component [Acinetobacter sp. ATCC 27244] Length = 340 Score = 36.4 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 26/227 (11%), Positives = 63/227 (27%), Gaps = 22/227 (9%) Query: 14 LLFAFITFFVFLQ----LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69 ++ I F+ Q + VL K N K + +K + + Sbjct: 14 IVLVAIVAFIVYQNQKDVASVLSK---NNKAVVIAYQTGVDPTKVAQANGDYERDSGQAI 70 Query: 70 NLDSINELFPIGTRLNKVMRDI---------VSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 + + L I + D + FL A+ + + Sbjct: 71 QWRKFDAGSDVVNALASGDVVIGNIGSSPLAAAASRDLPIEVFLVTAKLGGSEALVVSDK 130 Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTR---KSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177 + + L+ + F + +++ S V I +++ + I Sbjct: 131 SGIKTPKDLIGKTIAVPFVSTTHYSLLSALQHWDIEDSQVKIINLRPPEITAAWERGDID 190 Query: 178 IRIVGQFISASYDKDNLLISSDPEIFG---KVIDIWTFVRNIPPSNP 221 V + + +++ ++ D+W ++ NP Sbjct: 191 ATYVWEPALSKVKASGHVLTDSKQVGEWGAPTYDLWVVRKDFAEKNP 237 >gi|114563245|ref|YP_750758.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella frigidimarina NCIMB 400] gi|114334538|gb|ABI71920.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina NCIMB 400] Length = 912 Score = 36.4 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 46/166 (27%), Gaps = 4/166 (2%) Query: 12 LILLFAFITFFVFLQLR-GVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70 ++ FA + + L L +L + N+ + + + + + Sbjct: 282 DLIEFAAVAGVLILLLSVWILQARRNNQ--ALTIANINTANANMALNELKNNLEKNVLER 339 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + L + + D ++ D F+ S I+ G KL+ Sbjct: 340 TLQLTISENRYRGLVESLEDEY-IFYQHDTDGFVQYVSPSVTHILGLTITGFGEYYYKLL 398 Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 R N + + + I D + + E + Sbjct: 399 TDNPKNQLISGYIQRIINGEKLAPFEIEIFDTNGVIHTFEVLERPM 444 >gi|239995297|ref|ZP_04715821.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii ATCC 27126] Length = 472 Score = 36.1 bits (81), Expect = 3.6, Method: Composition-based stats. Identities = 26/200 (13%), Positives = 59/200 (29%), Gaps = 20/200 (10%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 I+L A I FVF+ L V T E+ S ++ D++ + L Sbjct: 253 IVLLAMIVGFVFIILHMVSMTGTLAERTLSTLYNDIKNRLNSDDKTSLRLDS-------- 304 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132 + + + ++ T+ + + N E++ D + L+ + Sbjct: 305 --DVEAQELADIREAFDKLIWDLTEVSLSN--EQFSNVLESMGDMLVVVDQDK-QTLLSN 359 Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192 + + DF K+ + + R V ++ D + Sbjct: 360 KRFDDFCHDQYGEKNGILKFIMQKLASSQSNELTHFSVSTGQE---RFVHWTKTSLADAN 416 Query: 193 NLLIS----SDPEIFGKVID 208 + E + ++ Sbjct: 417 GNIRGDIYVGSDETEQRSLE 436 >gi|323716898|gb|AAN39806.2| glycoprotein B [Pithecia pithecia lymphocryptovirus 1] Length = 356 Score = 36.1 bits (81), Expect = 3.7, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 43/128 (33%), Gaps = 8/128 (6%) Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKY---VFSKRDERGIITLGKGKKKDN 70 L+ A I +FL + V +T ++P + RD + + K + Sbjct: 234 LILAGIVAVIFLVIFLVRQNRTITQQPMQFLYPEIQSLTQNQGRDRNAVAPISKEQLDAI 293 Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130 + + E ++ D + L A++ + + + + ++ L+ Sbjct: 294 MLAWYEQMQGRSQAKSKPSDPATSLPSRA----LEAAKSRF-QLRKRPGKDRGSDLKPLL 348 Query: 131 DSRVYQDF 138 D +F Sbjct: 349 DGTEETEF 356 >gi|108804853|ref|YP_644790.1| inner-membrane translocator [Rubrobacter xylanophilus DSM 9941] gi|108766096|gb|ABG04978.1| inner-membrane translocator [Rubrobacter xylanophilus DSM 9941] Length = 321 Score = 36.1 bits (81), Expect = 3.8, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 5/43 (11%) Query: 2 VFIKMDSGDF-----LILLFAFITFFVFLQLRGVLGKKTGNEK 39 V M I++FA + + + RG+LG ++ + Sbjct: 276 VIAAMSDQYIGVRWTEIMIFAVLILVIVFRPRGLLGDRSAVQG 318 >gi|300866068|ref|ZP_07110798.1| Adenylate cyclase [Oscillatoria sp. PCC 6506] gi|300335929|emb|CBN55956.1| Adenylate cyclase [Oscillatoria sp. PCC 6506] Length = 489 Score = 36.1 bits (81), Expect = 4.0, Method: Composition-based stats. Identities = 22/202 (10%), Positives = 54/202 (26%), Gaps = 7/202 (3%) Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73 L+ A I+F L L + + + ++ + + + +K D L Sbjct: 226 LILAGISFLGITGL--TLAVRRLRQDAKELERRVRERTAQLQQANEEVVKEQEKSDRLLL 283 Query: 74 INELFPIGTRLNKVMRDIVSVYTDF-----DPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128 PI T+L I + + D F ++ + A ++ Sbjct: 284 SILPEPIATKLKNGQSSIADGFAEVTILFADIVGFTKLSQQVSPEELVKLLNEIFSAFDQ 343 Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188 L + + + + I +++ + + + Sbjct: 344 LTGRHGLEKIKTIGDAYMVVGGLPEPRNDHAESIAEIALDMQQEVAHFNAKYNMEINIRI 403 Query: 189 YDKDNLLISSDPEIFGKVIDIW 210 I+ + D+W Sbjct: 404 GINTGAAIAGVIGTKKFIYDLW 425 >gi|294498202|ref|YP_003561902.1| hypothetical protein BMQ_1436 [Bacillus megaterium QM B1551] gi|294348139|gb|ADE68468.1| conserved membrane protein [Bacillus megaterium QM B1551] Length = 242 Score = 36.1 bits (81), Expect = 4.2, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 48/115 (41%), Gaps = 3/115 (2%) Query: 16 FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT---LGKGKKKDNLD 72 F I F++ LR + +K E + F+ + S R ++T LG + +D++ Sbjct: 78 FLVIALFLYFLLRFIQSRKHPVEFRPTDEFTQQPNQSLVQVRPVLTNKLLGSQRTEDSVY 137 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 +++ + V+ +V D F+ +A + + ++ E V+ + Sbjct: 138 EWDDINIQSVWGDIVVDLSNTVLPKGDAVIFIRQAFGNIKVLIPYETEVSVNHSK 192 >gi|170079470|ref|YP_001736106.1| type I site-specific restriction-modification system, R (restriction) subunit [Synechococcus sp. PCC 7002] gi|169887139|gb|ACB00851.1| type I site-specific restriction-modification system, R (restriction) subunit [Synechococcus sp. PCC 7002] Length = 768 Score = 36.1 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 18/150 (12%), Positives = 43/150 (28%), Gaps = 9/150 (6%) Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS-------FF 119 + ++ G+ + + ++ D D F + A + ++ I+ Sbjct: 240 DPKEIKKKGKVPKNGSLFFSIFQTFMTTKGDKDFAHFYDYAPDFFDFIIIDECHRGGAND 299 Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE-NTVYITI 178 E I + V + R N K + + + T + + Sbjct: 300 ESTWRKILEYFSPAVQLGL-TATPKRDVNGDTYKYFGEPLYTYSLKEGINDGYLTPFKVV 358 Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVID 208 + YD D+ +I D + + Sbjct: 359 QFTTTLDEYLYDPDDDVIEGDIDEARTYEE 388 >gi|291391992|ref|XP_002712422.1| PREDICTED: juvenile hormone esterase binding protein 29-like [Oryctolagus cuniculus] Length = 292 Score = 35.7 bits (80), Expect = 4.6, Method: Composition-based stats. Identities = 21/153 (13%), Positives = 46/153 (30%), Gaps = 21/153 (13%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN--- 151 +F +F A+ ++ + + K +E+LV V + +++ N K+ Sbjct: 137 DKEFSIAEFSEGAKQAFAYVSKLLSQCKFDLLEELVAKEVLHVLKEKVTSLPDNHKSALA 196 Query: 152 ---VKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNL------LISSDPEI 202 + D+ I V I + + ++ + D + Sbjct: 197 ADIDEIVYTSTGDISIYYDEKGRKFVNILMCFWYLTSANVPNETIRGASVFQVKLGDQNV 256 Query: 203 FGKV-----IDIWTFVRNIPPS-NPNWVLISTK 229 K + F R PNW + + Sbjct: 257 ETKQLLSASYE---FQREFTQGVKPNWTIARIE 286 >gi|194333722|ref|YP_002015582.1| F0F1 ATP synthase subunit A [Prosthecochloris aestuarii DSM 271] gi|223634777|sp|B4S798|ATP61_PROA2 RecName: Full=ATP synthase subunit a 1; AltName: Full=ATP synthase F0 sector subunit a 1; AltName: Full=F-ATPase subunit 6 1 gi|194311540|gb|ACF45935.1| alternate F1F0 ATPase, F0 subunit A [Prosthecochloris aestuarii DSM 271] Length = 223 Score = 35.7 bits (80), Expect = 4.7, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 16/35 (45%) Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTG 36 +F M SG +I + I F L VLG TG Sbjct: 165 LFGNMMSGVMIIGILLGIAPLFFPVLMSVLGLLTG 199 >gi|301165089|emb|CBW24657.1| putative two-component regulator sensor histidine kinase transcriptional regulator [Bacteroides fragilis 638R] Length = 517 Score = 35.7 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 70/226 (30%), Gaps = 11/226 (4%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKK--TGNEKPFSGFFSGKYVFSKRDERGII 60 ++ + +++L A + F + LR + G + + + + K F + + Sbjct: 261 YMIVGLCTLVVILIAGLIFVAIVLLRFIAGNRKLKKSVQIANEHNELKTQFIQNISAQME 320 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR----NSYEAIVD 116 + ++ ++ + + D L + E V+ Sbjct: 321 PTLDTLASSAAELSDKAPQQAQQMQGQVAALKKFSNDIQELSTLENSLTEPYEMKEINVN 380 Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F E + +++ V V N + K+N + ++ L+ + + + Sbjct: 381 TFCEATMDKVKEFVQPEVSTVVNAAKLQIKTNPEQLERILIHLLKNAAEYTESGKIFLDF 440 Query: 177 TIR-IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP 221 R S + + +F +I +++ + Sbjct: 441 KKRGAHTHQFIISDTGTGIPVEKQENLFKPFTEI----KDLTEGDG 482 >gi|221054233|ref|XP_002261864.1| sec1 family domain containing protein [Plasmodium knowlesi strain H] gi|193808324|emb|CAQ39027.1| sec1 family domain containing protein, putative [Plasmodium knowlesi strain H] Length = 653 Score = 35.3 bits (79), Expect = 6.2, Method: Composition-based stats. Identities = 11/122 (9%), Positives = 30/122 (24%), Gaps = 4/122 (3%) Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE----KLVDSRVYQ 136 G LN + S + + ++ + + + IV + V Sbjct: 67 GVTLNLNLHRQRSNIPEVNAVYLIDNNKENIDKIVKDMCNNMYGSYYINFISYVCEENLG 126 Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196 F + K + + + + +++ N D + + Sbjct: 127 YFANECVKYNVASHVSKITDRYLKFVSLSSSTFSLNIPNCFKIFHTNEDQVIKDVMDRIT 186 Query: 197 SS 198 Sbjct: 187 EG 188 >gi|154308765|ref|XP_001553718.1| hypothetical protein BC1G_07805 [Botryotinia fuckeliana B05.10] gi|150852756|gb|EDN27948.1| hypothetical protein BC1G_07805 [Botryotinia fuckeliana B05.10] Length = 458 Score = 35.3 bits (79), Expect = 6.2, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 31/102 (30%) Query: 25 LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRL 84 +LR V G+K N P + + + + + + P T Sbjct: 112 WRLRSVPGQKRLNGAPPASLSGERPADATEASQTSTDAAAQPAIETRGAWGTSIPQATEE 171 Query: 85 NKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126 + V + + +EA+++ + D+ E Sbjct: 172 STVETQPIEEALEATHISTADEAKSAEKPAEDAVTEESTKDG 213 >gi|157112102|ref|XP_001651795.1| reticulon/nogo receptor [Aedes aegypti] gi|108878188|gb|EAT42413.1| reticulon/nogo receptor [Aedes aegypti] Length = 368 Score = 35.3 bits (79), Expect = 6.2, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 4/53 (7%) Query: 182 GQFISASYDKDNLLI----SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230 S D++ ++ DP + + + W F +++ +PNW+ T+ Sbjct: 51 SLLNLCSGDREMKIVCHCSPDDPHVKAQKANCWIFSKDLSRKDPNWLAFQTQT 103 >gi|53715633|ref|YP_101625.1| putative two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|60683575|ref|YP_213719.1| putative two-component regulator sensor histidine kinase transcriptional regulator [Bacteroides fragilis NCTC 9343] gi|52218498|dbj|BAD51091.1| putative two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|60495009|emb|CAH09827.1| putative two-component regulator sensor histidine kinase transcriptional regulator [Bacteroides fragilis NCTC 9343] Length = 517 Score = 35.3 bits (79), Expect = 6.2, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 70/226 (30%), Gaps = 11/226 (4%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKK--TGNEKPFSGFFSGKYVFSKRDERGII 60 ++ + +++L A + F + LR + G + + + + K F + + Sbjct: 261 YMIVGLCTLVVILIAGLIFVAIVLLRFIAGNRKLKKSVQIANEHNELKTQFIQNISAQME 320 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR----NSYEAIVD 116 + ++ ++ + + D L + E V+ Sbjct: 321 PTLDTLASSAAELSDKAPQQAQQMQGQVAALKKFSNDIQELSTLENSLTEPYEMKEINVN 380 Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F E + +++ V V N + K+N + ++ L+ + + + Sbjct: 381 TFCEATMDKVKEFVQPEVSTVVNAAKLQIKTNPEQLERILIHLLKNAAEYTESGKIFLDF 440 Query: 177 TIR-IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP 221 R S + + +F +I +++ + Sbjct: 441 KKRGAHTHQFIISDTGTGIPVEKQENLFKPFTEI----KDLTEGDG 482 >gi|320354675|ref|YP_004196014.1| AAA ATPase [Desulfobulbus propionicus DSM 2032] gi|320123177|gb|ADW18723.1| AAA ATPase [Desulfobulbus propionicus DSM 2032] Length = 471 Score = 35.3 bits (79), Expect = 6.3, Method: Composition-based stats. Identities = 17/155 (10%), Positives = 38/155 (24%), Gaps = 4/155 (2%) Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61 ++ + S +I A + + + GVL TG E+ G K + R Sbjct: 278 IYELLSSNRLVIGALAGVAA--MMLVIGVLLSGTGQEESAGGEPVVKTAATARPASAPGV 335 Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121 G + ++ + + P + + +L I Sbjct: 336 REGGGTEQAVEDVLQPPPAPQEIRDGDKLYRERL--GASASWLAGIYKGGFTIQLMMLVS 393 Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156 + +K ++ Sbjct: 394 DQAQSSIATTLTEDDYYQVREQLYVLRKKTSPPTI 428 >gi|253566554|ref|ZP_04844007.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251944726|gb|EES85201.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 517 Score = 35.3 bits (79), Expect = 6.3, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 70/226 (30%), Gaps = 11/226 (4%) Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKK--TGNEKPFSGFFSGKYVFSKRDERGII 60 ++ + +++L A + F + LR + G + + + + K F + + Sbjct: 261 YMIVGLCTLVVILIAGLIFVAIVLLRFIAGNRKLKKSVQIANEHNELKTQFIQNISAQME 320 Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR----NSYEAIVD 116 + ++ ++ + + D L + E V+ Sbjct: 321 PTLDTLASSAAELSDKAPQQAQQMQGQVAALKKFSNDIQELSTLENSLTEPYEMKEINVN 380 Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176 +F E + +++ V V N + K+N + ++ L+ + + + Sbjct: 381 TFCEATMDKVKEFVQPEVSTVVNAAKLQIKTNPEQLERILIHLLKNAAEYTESGKIFLDF 440 Query: 177 TIR-IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP 221 R S + + +F +I +++ + Sbjct: 441 KKRGAHTHQFIISDTGTGIPVEKQENLFKPFTEI----KDLTEGDG 482 >gi|149918520|ref|ZP_01907009.1| hypothetical protein PPSIR1_20314 [Plesiocystis pacifica SIR-1] gi|149820596|gb|EDM80008.1| hypothetical protein PPSIR1_20314 [Plesiocystis pacifica SIR-1] Length = 574 Score = 35.3 bits (79), Expect = 6.8, Method: Composition-based stats. Identities = 8/99 (8%), Positives = 24/99 (24%), Gaps = 6/99 (6%) Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63 M ++LFA + ++L+ ++ E + + Sbjct: 7 AIMMFSFAGMVLFAGVAVVLYLR------QQQLREAAPPPLPVTPKPAAPQASPIEEPTE 60 Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKD 102 + + + + + DP+ Sbjct: 61 PTEFVPARHGGPDPDAPRKLGESGTELVPAPHGPEDPEA 99 >gi|311103567|ref|YP_003976420.1| thiol:disulfide interchange protein DsbC [Achromobacter xylosoxidans A8] gi|310758256|gb|ADP13705.1| thiol:disulfide interchange protein DsbC [Achromobacter xylosoxidans A8] Length = 265 Score = 35.3 bits (79), Expect = 7.6, Method: Composition-based stats. Identities = 26/196 (13%), Positives = 56/196 (28%), Gaps = 13/196 (6%) Query: 44 FFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDF 103 S ++G+ K D S ++ P + V + D Sbjct: 19 GMSAGAAAQGDKSVSTQSVGQPGKGDKSYSTTQVAPADPVADAVKDRFRQRFDGMDVTAV 78 Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL------V 157 +E + + +++ + TR++ E+ S + Sbjct: 79 RRTPYGLFEVQLGMDLIYTDEKVTWVMEGPLIDAMTRRDVTRETQERLSAVSFDQLPLDL 138 Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS------DPEIFGKVIDIWT 211 I +K + Q D DN+ + + P+ KV D+W Sbjct: 139 AIKQVKGDGSRKVAIFEDPNCGYCKQLRKTLEDVDNITVYTFLYPILSPDSKDKVRDVWC 198 Query: 212 FVRNIPPSNPNWVLIS 227 ++ + +W+L Sbjct: 199 -SKDPGAAWDDWMLRG 213 >gi|242785081|ref|XP_002480519.1| capsule-associated protein CAP1, putative [Talaromyces stipitatus ATCC 10500] gi|218720666|gb|EED20085.1| capsule-associated protein CAP1, putative [Talaromyces stipitatus ATCC 10500] Length = 590 Score = 35.3 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 29/113 (25%), Gaps = 3/113 (2%) Query: 11 FLILLFAFITFFVFLQLRGV---LGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67 +L F I F LR G K EK F + D I L Sbjct: 7 LYLLCFLTIAAFTLFFLRSPETDTGPKAPFEKSLPADFENLLQPTTEDSHPIARLINDAN 66 Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120 D + T + R + + A+ ++D + Sbjct: 67 TDFDAKLARQSKSLTEAVEEYRRRYGMPPPPHFDKWFAFAKKRGVQLIDEYDT 119 >gi|82617538|ref|NP_001032303.1| hypothetical protein LOC552941 [Danio rerio] gi|81097772|gb|AAI09475.1| Zgc:123096 [Danio rerio] gi|157423611|gb|AAI53656.1| Zgc:123096 protein [Danio rerio] Length = 243 Score = 34.9 bits (78), Expect = 9.0, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 45/153 (29%), Gaps = 18/153 (11%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL------STRKSN 148 +F ++F+ A ++ + + + A+E LV + + R + Sbjct: 85 DKEFSIEEFMEGAIQAFSHVSRLLSQCQFEALEGLVAKDLIKKLEGKCAHLPLSHQRALS 144 Query: 149 EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-----------NLLIS 197 + + D+ I E V I +R + D+ Sbjct: 145 AEPDDIMYMTAGDVGIYYDDSERKFVSILMRFWYLTSAKFPDESVDGAKVFQVAIGDERE 204 Query: 198 SDPEIFGKVIDIWTFVRNIPPS-NPNWVLISTK 229 E + + F R P+W++ + Sbjct: 205 KQTETKRLLTANYEFQREFTEGVTPDWIITRIE 237 >gi|86607459|ref|YP_476222.1| serine/threonine protein kinase [Synechococcus sp. JA-3-3Ab] gi|86556001|gb|ABD00959.1| serine/threonine protein kinase [Synechococcus sp. JA-3-3Ab] Length = 530 Score = 34.9 bits (78), Expect = 9.1, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 21/68 (30%) Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72 I L A I F LR +L TG E+P + + ++ Sbjct: 354 IALLAAIAGSTFWGLRLLLDPGTGMERPPAVPLPPATDGQQAIPEPLLDWLLRDPAGEPA 413 Query: 73 SINELFPI 80 ++ P Sbjct: 414 FEDDPDPA 421 >gi|295703552|ref|YP_003596627.1| hypothetical protein BMD_1417 [Bacillus megaterium DSM 319] gi|294801211|gb|ADF38277.1| conserved membrane protein [Bacillus megaterium DSM 319] Length = 242 Score = 34.9 bits (78), Expect = 9.8, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 47/115 (40%), Gaps = 3/115 (2%) Query: 16 FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT---LGKGKKKDNLD 72 F I F++ LR + +K E + F+ + S R ++T LG + +D++ Sbjct: 78 FLVIALFLYFLLRFIQSRKHPVEFRPTDEFTQQPNQSLVQVRPVLTNKLLGSQRTEDSVY 137 Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127 +++ + V+ +V D F+ + + + ++ E V+ + Sbjct: 138 EWDDINIQSVWGDIVVDLSNTVLPKGDAVIFIRQVFGNIKVLIPYETEVSVNHSK 192 >gi|76779894|gb|AAI06212.1| LOC733342 protein [Xenopus laevis] Length = 228 Score = 34.9 bits (78), Expect = 9.8, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 57/152 (37%), Gaps = 18/152 (11%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN--- 151 +F ++F + A+ ++ + + K A++ L+ S + +D + S+ N +N Sbjct: 72 DREFTIEEFTDGAKQAFTLVSKLLSQCKFDALQNLISSELLEDIKEKCSSISDNHRNALA 131 Query: 152 -VKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL--------ISSDPEI 202 ++ I + + +++I + +++ + D+ L I D Sbjct: 132 AHSDEIMYITTGNVAIYYDDNGRKFVSILMRFWYMTCAELPDDSLEGTKVFQFIMGDETT 191 Query: 203 FGKVIDIWT----FVRNIPPS-NPNWVLISTK 229 + T F R P+W++ + Sbjct: 192 -KNTKRLLTANYEFRREFTQGVKPDWIITRIE 222 >gi|72153688|ref|XP_792216.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115703999|ref|XP_001203219.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 210 Score = 34.9 bits (78), Expect = 9.8, Method: Composition-based stats. Identities = 11/98 (11%), Positives = 31/98 (31%), Gaps = 8/98 (8%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN------ 148 DF +F A+ + I + EG + +E L+ ++ Q+ ++ Sbjct: 41 DPDFSIDEFTQGAKQALVTISEEIAEGTLENLEDLLSPKLLQEIKNTCRGFSLKEISSLS 100 Query: 149 --EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184 K++ + + + + + + Sbjct: 101 ISGKDILHTFPHDIAIHYDDKGGKFLFILMKFWCHSTQ 138 >gi|50417024|gb|AAH77162.1| Zgc:123096 protein [Danio rerio] Length = 236 Score = 34.9 bits (78), Expect = 9.9, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 45/153 (29%), Gaps = 18/153 (11%) Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL------STRKSN 148 +F ++F+ A ++ + + + A+E LV + + R + Sbjct: 78 DKEFSIEEFMEGAIQAFSHVSRLLSQCQFEALEGLVAKDLIKKLEGKCAHLPLSHQRALS 137 Query: 149 EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-----------NLLIS 197 + + D+ I E V I +R + D+ Sbjct: 138 AEPDDIMYMTAGDVGIYYDDSERKFVSILMRFWYLTSAKFPDESVDGAKVFQVAIGDERE 197 Query: 198 SDPEIFGKVIDIWTFVRNIPPS-NPNWVLISTK 229 E + + F R P+W++ + Sbjct: 198 KQTETKRLLTANYEFQREFTEGVTPDWIITRIE 230 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.311 0.112 0.299 Lambda K H 0.267 0.0346 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,439,084,923 Number of Sequences: 14124377 Number of extensions: 49144800 Number of successful extensions: 278922 Number of sequences better than 10.0: 1132 Number of HSP's better than 10.0 without gapping: 811 Number of HSP's successfully gapped in prelim test: 321 Number of HSP's that attempted gapping in prelim test: 277049 Number of HSP's gapped (non-prelim): 1227 length of query: 232 length of database: 4,842,793,630 effective HSP length: 134 effective length of query: 98 effective length of database: 2,950,127,112 effective search space: 289112456976 effective search space used: 289112456976 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 78 (34.9 bits)