BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780815|ref|YP_003065228.1| hypothetical protein
CLIBASIA_03530 [Candidatus Liberibacter asiaticus str. psy62]
(232 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|299133204|ref|ZP_07026399.1| import inner membrane translocase subunit Tim44 [Afipia sp. 1NLS2]
gi|298593341|gb|EFI53541.1| import inner membrane translocase subunit Tim44 [Afipia sp. 1NLS2]
Length = 234
Score = 199 bits (504), Expect = 4e-49, Method: Composition-based stats.
Identities = 60/232 (25%), Positives = 114/232 (49%), Gaps = 10/232 (4%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
D ++F + F+FL+LR VLG++TG+E+P + + D + G +
Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPYDRVTRDVAPTGNDNNVVRMPGTAVDQA 61
Query: 70 ----------NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ + + L + + + F+ + F++ A+++YE IV +F
Sbjct: 62 TLAPSADPVSPRERWKGIAAPDSELASGLDQVAAADPSFNAQHFISGAKSAYEMIVLAFA 121
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
G ++ L+ S VY F + R+ + V++ ID ++++A + + ++T+R
Sbjct: 122 NGDRRTLKDLLSSDVYDGFEAVIKGREQQGEKVETKFASIDKAELVSAGVRDKLAHLTVR 181
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
V Q I+A+ DKD +I +PE V D+WTF R++ +PNW L+ T+ G
Sbjct: 182 FVSQMITATRDKDGAVIDGNPEKLTDVTDVWTFSRDVSSRDPNWKLVGTESG 233
>gi|115522403|ref|YP_779314.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
palustris BisA53]
gi|115516350|gb|ABJ04334.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
palustris BisA53]
Length = 233
Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats.
Identities = 60/232 (25%), Positives = 113/232 (48%), Gaps = 9/232 (3%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK- 68
D ++F + F+FL+LR VLG++TG+E+P + + ++ +
Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGDERPPYDRAARDLLRGSQEGNVVPMPSPSIDPT 61
Query: 69 --------DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
D + + L + I + + FD + FL+ AR +YE IV +F
Sbjct: 62 LAPSADVTPPSDRWKSVAAPDSPLEHGLNAIAAHDSGFDAQHFLSGARGAYEMIVLAFAN 121
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
G A++ L+ S VY F ++ R+ N+ ++ V ID +++ A + + + +T+R
Sbjct: 122 GDRRALKDLLSSEVYDSFEAAIREREKNDHKTETRFVSIDKAELVTAEVRDRSAQLTVRF 181
Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
V Q I+ + DK ++ +P+ + D+WTF R++ +PNW L+ T G+
Sbjct: 182 VSQMITVTRDKTGAIVDGNPDKVADITDVWTFARDVASRDPNWKLVGTGSGQ 233
>gi|158426224|ref|YP_001527516.1| mitochondrial import inner membrane translocase [Azorhizobium
caulinodans ORS 571]
gi|158333113|dbj|BAF90598.1| mitochondrial import inner membrane translocase [Azorhizobium
caulinodans ORS 571]
Length = 279
Score = 196 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 61/235 (25%), Positives = 115/235 (48%), Gaps = 12/235 (5%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
D ++F + F+F++LR VLG++TG E+P F+ + + + + +
Sbjct: 45 DIYTIIFLALAVFIFVRLRSVLGQRTGKERPPYDPFTPRPPAAPSSDNVVSLPERVGDAP 104
Query: 70 NLDSINELFP------------IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117
+ P G+ L + + I ++ DFD K F+ A+++YE IV +
Sbjct: 105 QRPTAPVSQPLPGTFRWKGVTEEGSPLAEALDQIAAIEPDFDAKHFVEGAKSAYEMIVLA 164
Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
F G ++ L+ V+ F ++S R+ + ++S V I+ +II AS+ T +T
Sbjct: 165 FAAGDRRTLKDLLSKDVFDGFVAAISEREGRGETMESRFVAIEKAEIIEASVRGRTGQVT 224
Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+R V + ISA+ +D ++ + V D+WTF R + +PNW L++T+ +
Sbjct: 225 LRFVSKIISATRSRDGAVVDGSADTVADVTDVWTFARELGARDPNWKLVATEAAQ 279
>gi|75674306|ref|YP_316727.1| hypothetical protein Nwi_0107 [Nitrobacter winogradskyi Nb-255]
gi|74419176|gb|ABA03375.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
Length = 234
Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 65/232 (28%), Positives = 115/232 (49%), Gaps = 10/232 (4%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL------- 62
D ++F + F+FL+LR VLG++TG+E+P + + + +D +
Sbjct: 2 DIYTIIFLALAVFIFLRLRSVLGQRTGSERPPYDRATREVLGGTQDNNVVPVPGTVINQS 61
Query: 63 ---GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
D + GT L + I + + FDP FL+ AR++YE IV +F
Sbjct: 62 SAAPSADVGGAADRWKSVAEPGTPLALGLDAIAAQDSSFDPAHFLSGARSAYEMIVLAFA 121
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
G ++ L+ S VY+ F+ ++ R+ E+ ++ V ID +++I A + + +T+R
Sbjct: 122 NGDRRTLKDLLSSDVYESFDAAIKDRERLEQKTETRFVSIDKVELIGAEVRDGAEQLTVR 181
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ Q IS + DK ++ +PE + D+WTF R+I +PNW L+ T
Sbjct: 182 FISQMISVTRDKTGAIVDGNPEKISDITDVWTFARDISSRDPNWKLVGTGSA 233
>gi|90421823|ref|YP_530193.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
palustris BisB18]
gi|90103837|gb|ABD85874.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
palustris BisB18]
Length = 233
Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 9/231 (3%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDE---------RGII 60
D ++F + F+FL+LR VLG+KTGNE+P + V +D
Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQKTGNERPPFDRAARDVVRGAQDNVVPLPGAVVDQAP 61
Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
D + GT L + + IV+ + FDP+ FL AR +YE IV +F
Sbjct: 62 QTPSADVVPPTDRWKGVAEPGTPLAQGLNAIVAQDSSFDPQHFLTGARGAYEMIVLAFAN 121
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
G A++ L+ VY F + R+ E+ ++ V ID ++++A + +T+R
Sbjct: 122 GDRRALKDLLSPEVYDSFEAVIREREKQEQKTETRFVSIDKAELVSAEARDRAAQLTVRF 181
Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
V Q I+ + DK ++ +P+ + D+WTF R++ +PNW L+ T
Sbjct: 182 VSQMITVTRDKTGAIVDGNPDKVADITDVWTFARDVGSRDPNWKLVGTGSV 232
>gi|328545867|ref|YP_004305976.1| Import inner membrane translocase subunit Tim44 [polymorphum gilvum
SL003B-26A1]
gi|326415607|gb|ADZ72670.1| Import inner membrane translocase subunit Tim44 [Polymorphum gilvum
SL003B-26A1]
Length = 242
Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 78/242 (32%), Positives = 130/242 (53%), Gaps = 16/242 (6%)
Query: 7 DSGDFLI--LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRD--------- 55
S F I ++F + FVF +LR VLGK+TGNE+P +S ++
Sbjct: 1 MSDIFDIYNIIFLALAIFVFFRLRSVLGKRTGNERPPFDPYSKPARDNRAPGGAEAGGVD 60
Query: 56 -----ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNS 110
+ G G + ++++ P G+ LN +R I+SV F+P+ FL AR +
Sbjct: 61 NVIPLPGKPVEAGAGDTERGAVVLDKVAPSGSALNAALRQILSVDRSFEPEQFLQGARAA 120
Query: 111 YEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE 170
YE IV +F EG ++ L+ VY F ++S R++ + ++S+ VGID I+ A+++
Sbjct: 121 YEMIVTAFAEGDRKTLKNLLSKEVYDGFVTAISEREARGETIESTFVGIDKADIVEAALK 180
Query: 171 ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ +T+R+ + ISA+ DKD ++ DP +V+DIWTF R+ +PNW L++T+
Sbjct: 181 GSVAQVTVRLQSELISATRDKDGHVVDGDPSRVTEVVDIWTFARDTTSRDPNWKLVATES 240
Query: 231 GE 232
E
Sbjct: 241 AE 242
>gi|39933380|ref|NP_945656.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
palustris CGA009]
gi|39653005|emb|CAE25747.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
Length = 289
Score = 195 bits (494), Expect = 5e-48, Method: Composition-based stats.
Identities = 60/233 (25%), Positives = 117/233 (50%), Gaps = 11/233 (4%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64
D ++F + F+FL+LR VLG++TG+E+P + + + + + ++++
Sbjct: 56 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDNNVVSMPGTVIDQ 115
Query: 65 ------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
D + + L + I + FD + F+ A+++YE IV +F
Sbjct: 116 APMAPNADVVPPSDRWKGIAEPDSELEHGLNAIAQNDSSFDAQHFITGAKSAYEMIVMAF 175
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
G ++ L+ S VY+ F+ ++ R+ N+ V++ V I+ ++I+A + + T +T+
Sbjct: 176 ANGDRRSLRDLLSSEVYESFDAAIKDREKNDLKVETRFVSIEKAELISAELRDRTAMLTL 235
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ V Q ISA+ DK ++ P+ + D+WTF R+ +PNW L+ T G
Sbjct: 236 KFVSQMISATRDKTGAVVDGSPDKVVDITDVWTFARDTSSRDPNWKLVGTGSG 288
>gi|209883544|ref|YP_002287401.1| import inner membrane translocase, subunit Tim44 [Oligotropha
carboxidovorans OM5]
gi|209871740|gb|ACI91536.1| import inner membrane translocase, subunit Tim44 [Oligotropha
carboxidovorans OM5]
Length = 234
Score = 194 bits (492), Expect = 8e-48, Method: Composition-based stats.
Identities = 61/232 (26%), Positives = 113/232 (48%), Gaps = 10/232 (4%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK- 68
D ++F + F+FL+LR VLG++TG+E+P + S D + G +
Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRITRDMARSGNDNNVVKMPGTTIDQT 61
Query: 69 ---------DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
D + T L + ++ + F+ + F++ A+++YE IV +F
Sbjct: 62 PLAPAADPIPAQDRWKGIAEPDTPLATGLDEVAAADPSFNAQHFVSGAKSAYEMIVQAFA 121
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
G ++ L+ + VY F + R+ + V++ ID +++A + + ++T+R
Sbjct: 122 SGDRRMLKDLLSAEVYDGFEAVIKGREQRGEKVETRFASIDKAALVSAGVRDRIAHLTVR 181
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
V Q I+ + DKD +I +PE V D+WTF R++ +PNW L+ T+ G
Sbjct: 182 FVSQMITVTRDKDGAVIDGNPEKLTDVTDVWTFSRDVSSRDPNWKLVGTESG 233
>gi|27375753|ref|NP_767282.1| hypothetical protein blr0642 [Bradyrhizobium japonicum USDA 110]
gi|27348891|dbj|BAC45907.1| blr0642 [Bradyrhizobium japonicum USDA 110]
Length = 235
Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats.
Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 11/233 (4%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG---- 65
D ++F + F+FL+LR VLG++TGNE+P + + ++ ++T+
Sbjct: 2 DIYTIIFLALAVFIFLRLRSVLGQRTGNERPPFDHTAARNALGGAQDKNVVTMPGKVIDQ 61
Query: 66 -------KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ D L GT L + + IV + FDP+ F++ AR +YE IV +F
Sbjct: 62 APLAPTVEPTPPSDRWKGLTEPGTALAQGLDAIVDKDSTFDPRHFISGARGAYEMIVLAF 121
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
G A+ L+ S VY+ F+ ++ R+ NE+ ++ V ID +++ A + + T +TI
Sbjct: 122 ANGDRRALRDLLSSEVYESFDAAIKEREKNEQKTETRFVSIDKAELVGAELRDRTAQLTI 181
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
R V Q ISA+ DK ++ + + DIWTF R+I +PNW L+ T
Sbjct: 182 RFVSQMISATRDKAGNIVDGSADTVADITDIWTFARDITSRDPNWKLVGTGSA 234
>gi|154245991|ref|YP_001416949.1| import inner membrane translocase subunit Tim44 [Xanthobacter
autotrophicus Py2]
gi|154160076|gb|ABS67292.1| import inner membrane translocase subunit Tim44 [Xanthobacter
autotrophicus Py2]
Length = 250
Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats.
Identities = 56/234 (23%), Positives = 111/234 (47%), Gaps = 11/234 (4%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK-- 67
D ++F + F+F++LR VLG++TG E+P +S + + +
Sbjct: 17 DIYTIIFLALAVFIFVRLRSVLGQRTGRERPPYDPYSRDTARPPQPASDKVVPLPERPVS 76
Query: 68 ---------KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ G+ + +I + DFD + FL AR +YE IV +F
Sbjct: 77 PPAASPVDEAPPAYRWEGVAQEGSATAAALDEIARIEPDFDARHFLTGARAAYEMIVTAF 136
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
G A++ L+ VY F +++ R+S + ++S V ++ ++ + ++ + + +T+
Sbjct: 137 AAGDRRALKDLLAKDVYDGFVSAIADRESRRETMESRFVAVEQAELQDVTVRDRSAQLTV 196
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
R V + IS + D ++ P+ V D+WTF R++ +PNW L++T+ +
Sbjct: 197 RFVSKLISVTRGPDGAVVDGSPDTVADVTDVWTFARDLGTRDPNWKLVATEAAQ 250
>gi|91974901|ref|YP_567560.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
palustris BisB5]
gi|91681357|gb|ABE37659.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
palustris BisB5]
Length = 235
Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats.
Identities = 61/233 (26%), Positives = 116/233 (49%), Gaps = 11/233 (4%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64
D ++F + F+FL+LR VLG++TG+E+P + + + + + ++ +
Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDNNVVPMPGTVIDQ 61
Query: 65 ------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
D + + L + ++ + FD FL A+++YE IV +F
Sbjct: 62 SPTAPNADVVPPSDRWKGIAEPDSPLAHGLNAVLVQDSSFDANHFLTGAKSAYEMIVMAF 121
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
G A+ L+ + VY F+ ++ R+ NE+ ++ V ID +++ A + E+T +T+
Sbjct: 122 ANGDRRALRDLLSTEVYDSFDAAIKDREKNERKTETRFVAIDKAELLGAEVREHTAQLTV 181
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ V Q IS + DK ++ +P+ + D+WTF R+I +PNW L+ T G
Sbjct: 182 KFVSQMISVTRDKAGAIVDGNPDKVADITDVWTFARDISSRDPNWKLVGTGSG 234
>gi|325291461|ref|YP_004277325.1| hypothetical protein AGROH133_02812 [Agrobacterium sp. H13-3]
gi|325059314|gb|ADY63005.1| hypothetical protein AGROH133_02812 [Agrobacterium sp. H13-3]
Length = 232
Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats.
Identities = 84/232 (36%), Positives = 129/232 (55%), Gaps = 5/232 (2%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG-- 63
M DF+ L F +FLQLR VLG++TGNEKP ++ + V +
Sbjct: 1 MGFSDFITLFFLVAAVLIFLQLRSVLGRRTGNEKPPFDPYTPRDVAKGPVTDDNKVVTLP 60
Query: 64 ---KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
+ + ++ + L P+ T LN +R++++ F PK+FLN AR +YE IV F +
Sbjct: 61 KRSEAEDENRFAEADALAPVDTALNTSLRELMTKDPTFRPKEFLNGARMAYEMIVMGFAD 120
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
G ++ L+ V+ F ++S R+S + VKS+ VGI+ I A I ++ IT+RI
Sbjct: 121 GDRKTLKNLLSKEVFDGFEAAISERESRGEVVKSTFVGIEKADITQAGIRDSEEQITLRI 180
Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
V Q ISA+YDKD L+ DP+ +V DIWTF R++ +PNW LI+T+ +
Sbjct: 181 VSQLISATYDKDGKLVDGDPDAVAEVDDIWTFSRDVRSRDPNWKLIATESEQ 232
>gi|146337371|ref|YP_001202419.1| hypothetical protein BRADO0204 [Bradyrhizobium sp. ORS278]
gi|146190177|emb|CAL74169.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
Length = 233
Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats.
Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 10/229 (4%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGK----------YVFSKRDERGI 59
D ++F + F+FL+LR VLG++TG+E+ + V +
Sbjct: 2 DIYTIIFLGLAVFIFLRLRSVLGQRTGSERTPFDRTARNAVGAPDNHVMPVPGAPLDPAG 61
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ G D + GT L + + I + FDP+ FL AR++YE IV +F
Sbjct: 62 PSTGAADFGAPSDRWRGIAEPGTPLARGLDAIAANDASFDPRHFLTGARSAYEMIVLAFA 121
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
G A+ L+ S VY F+ + R+ NE+ ++ V ID +++NA + T +T+R
Sbjct: 122 NGDRRALRDLLSSEVYDSFDAVIKDREKNEQKTETRFVSIDTAELVNAEARDRTAQLTVR 181
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
V Q IS + DK ++ +P+ + DIWTF R+ +PNW L+ T
Sbjct: 182 FVSQMISVTRDKTGNIVDGNPDKVADITDIWTFARDTGSRDPNWKLVGT 230
>gi|85714085|ref|ZP_01045074.1| hypothetical protein NB311A_08013 [Nitrobacter sp. Nb-311A]
gi|85699211|gb|EAQ37079.1| hypothetical protein NB311A_08013 [Nitrobacter sp. Nb-311A]
Length = 234
Score = 192 bits (486), Expect = 4e-47, Method: Composition-based stats.
Identities = 66/232 (28%), Positives = 117/232 (50%), Gaps = 10/232 (4%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL------- 62
D ++F + F+FL+LR VLG++TG+E+P + + + +D+ +
Sbjct: 2 DIYTIIFLALAVFIFLRLRSVLGQRTGSERPPYDGATREILRGAQDKNVVPVPGTVINQS 61
Query: 63 ---GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ D +L GT L + I + + FDP FL+ AR++YE IV +F
Sbjct: 62 SATPTADVGPSADRWKDLTEPGTALALGLDAIAAQDSSFDPGHFLSGARSAYEMIVLAFA 121
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
G ++ L+ S VY+ F+ ++ R+ E+ ++ V ID +++I A + + +T+R
Sbjct: 122 NGDRRTLKDLLSSDVYESFDAAIKDRERLEQKTETRFVSIDKVELIGAELRDGAEQLTVR 181
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ Q IS + DK ++ +PE + D+WTF R I +PNW L+ T
Sbjct: 182 FISQMISVTRDKTGAIVDGNPERISDITDVWTFAREISSRDPNWKLVGTGSA 233
>gi|92115749|ref|YP_575478.1| import inner membrane translocase, subunit Tim44 [Nitrobacter
hamburgensis X14]
gi|91798643|gb|ABE61018.1| import inner membrane translocase, subunit Tim44 [Nitrobacter
hamburgensis X14]
Length = 234
Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats.
Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 10/233 (4%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII--------- 60
D ++F + F+FL+LR VLG++TG+E+P + + + +D+ +
Sbjct: 2 DIYTIIFLALAVFIFLRLRSVLGQRTGSERPPYDRATREVLHGTQDKNVVPMAGPVIDQA 61
Query: 61 -TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ D L GT L + I + + FDPK F++ AR++YE IV +F
Sbjct: 62 SSAPTADAASTPDRWKNLAEPGTPLALGLDAIAAHDSSFDPKHFISGARSAYEMIVLAFA 121
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
G ++ L+ S VY+ F+ ++ R+ E+ ++ V ID +++I A + ++ +T+R
Sbjct: 122 NGDRRTLKDLLSSDVYESFDAAIKDREKLEQKTETRFVSIDKVELIGAELRDSAEQLTVR 181
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ Q IS + DK ++ +PE + D+WTF R+IP +PNW L+ T +
Sbjct: 182 FISQMISMTRDKTGAIVDGNPEKISDITDVWTFARDIPSRDPNWKLVGTGSTD 234
>gi|222147023|ref|YP_002547980.1| Membrane associated transporter protein [Agrobacterium vitis S4]
gi|221734013|gb|ACM34976.1| Membrane associated transporter protein [Agrobacterium vitis S4]
Length = 232
Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats.
Identities = 85/232 (36%), Positives = 129/232 (55%), Gaps = 5/232 (2%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M S DF+ L F +F QLR VLG++TGNEKP F+G+ + +
Sbjct: 1 MGSNDFVTLFFLVAAVLIFWQLRSVLGRRTGNEKPPKDPFAGRPDAASPAAEDARVVTLP 60
Query: 66 KKKDN-----LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
++ + +I+ P GT LN+ +R +V V F PK+FLN AR +YE IV +F
Sbjct: 61 RRDEADGEERQTAIDAYAPAGTPLNQQLRQVVEVDPSFVPKEFLNGARMAYEMIVTAFAA 120
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
G +++ L+ VY F+ +++ R+ + +KS+ VGID +I +A + + V IT+R+
Sbjct: 121 GDRKSLKDLLSREVYDGFDAAITEREQRGEVMKSTFVGIDKAEITSAEVRDQEVQITVRL 180
Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
V Q ISA+YD +I D E G V DIWTF R+ +PNW LI+T+ +
Sbjct: 181 VSQLISATYDSQGAVIEGDAESVGDVNDIWTFARDTRSRDPNWKLIATESDQ 232
>gi|148251774|ref|YP_001236359.1| hypothetical protein BBta_0156 [Bradyrhizobium sp. BTAi1]
gi|146403947|gb|ABQ32453.1| hypothetical protein BBta_0156 [Bradyrhizobium sp. BTAi1]
Length = 233
Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats.
Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 10/229 (4%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
D ++F + F+F++LR VLG++TG+E+ + V D + G
Sbjct: 2 DIYTIIFLALAVFIFVRLRAVLGQRTGSERTPFDRAARNAVQGAPDNHVMPVPGAPLDPA 61
Query: 70 ----------NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
D + GT L + + +V+ FDP+ FL AR++YE IV +F
Sbjct: 62 VATAGAEPGVPSDRWRGVAEPGTPLARGLDAVVANDPSFDPRHFLTGARSAYEMIVLAFA 121
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
G A+ L+ S VY F+ + R+ +E+ ++ V ID ++++A + + T +T+R
Sbjct: 122 NGDRRALRDLLSSEVYDSFDAVIKDREKHEQKTETRFVSIDTAELVSADLRDRTAQLTVR 181
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
V Q IS + DK ++ +P+ + DIWTF R+ +PNW L+ T
Sbjct: 182 FVSQMISVTRDKMGNIVDGNPDKVADITDIWTFARDTGSRDPNWKLVGT 230
>gi|260467422|ref|ZP_05813593.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
opportunistum WSM2075]
gi|259028818|gb|EEW30123.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
opportunistum WSM2075]
Length = 236
Score = 191 bits (484), Expect = 8e-47, Method: Composition-based stats.
Identities = 71/236 (30%), Positives = 121/236 (51%), Gaps = 9/236 (3%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT---- 61
M DF + F +F QLR VLG++TG+E+P ++ K +
Sbjct: 1 MGFFDFGTIFFLIAAVVIFFQLRNVLGRRTGSERPPFDPYTAARTGDKDAAQKPENVVSL 60
Query: 62 -----LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116
G+ D +I+ T LNK +R I FDPK F++ A+ +YE IV
Sbjct: 61 PRKRLPGEPAAPDAYAAIDAFAKPDTDLNKGLRTIKDNDPSFDPKGFVDGAKMAYEMIVM 120
Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
++ +G ++ L+ V+ F ++ R++ + ++SS VGID I++A ++ ++
Sbjct: 121 AYADGDRKTLKNLLSREVFDGFVAAIGEREAKSEKIQSSFVGIDKADIVSAEMKGGEAHV 180
Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
T+RI+ + ISA+ DK +I DPE +V D+WTF R+ +PNW L++T+ +
Sbjct: 181 TLRIISELISATRDKAGTVIDGDPETVAEVKDVWTFARDTRSRDPNWKLVATEEED 236
>gi|218661852|ref|ZP_03517782.1| import inner membrane translocase subunit Tim44 [Rhizobium etli
IE4771]
Length = 234
Score = 191 bits (484), Expect = 8e-47, Method: Composition-based stats.
Identities = 82/231 (35%), Positives = 126/231 (54%), Gaps = 6/231 (2%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG------I 59
M S DF+ L F +F QLR VLG++TGNEKP ++ +
Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
G+ +D +I+ + GT LN+ +R + F+PK+FLN AR +YE IV ++
Sbjct: 61 RRDATGEDEDRFAAIDAVAAPGTPLNESLRALNKADPSFNPKEFLNGARMAYEMIVMAYA 120
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
+G ++ L+ VY F+ ++ R+S + VKS+ VGID +I +A + + IT+R
Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGERESRGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
IV Q ISA+YDK + LI D E +V D+WTF R+ +PNW L++T+
Sbjct: 181 IVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATES 231
>gi|209966267|ref|YP_002299182.1| hypothetical protein RC1_3002 [Rhodospirillum centenum SW]
gi|209959733|gb|ACJ00370.1| conserved hypothetical protein [Rhodospirillum centenum SW]
Length = 230
Score = 191 bits (484), Expect = 8e-47, Method: Composition-based stats.
Identities = 51/230 (22%), Positives = 103/230 (44%), Gaps = 2/230 (0%)
Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER-GIITL 62
+ F IL+F + F+ +LR VLG++ G E+ F+ + +
Sbjct: 1 MGEGFYFFDILIFGMVAAFLVYRLRSVLGRRHGEERQRPNPFTPPPKAGQAPAPAESDNV 60
Query: 63 GKGKKKDNLDSINELFPIGT-RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
+ G L + +R I + F+ K FL A+ ++E IV +F +G
Sbjct: 61 VPLPDRGRPPEAPLPVETGPISLEEGLRQIRAADPTFNEKHFLQGAKAAFEMIVKAFADG 120
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
+ L+ VY F +++ R++ + ++ + + + + A ++ +TIR +
Sbjct: 121 DTPTLRPLLADDVYDGFAEAIRKRQAAGETRETRITAFESVDLKEARMDGRHAMVTIRFI 180
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ + + ++ DP+ +V+DIWTF RN +PNW+L+ T++
Sbjct: 181 THQVDCTVNAAGDVVDGDPDEAIEVVDIWTFSRNTRSPDPNWLLVETRVP 230
>gi|86747526|ref|YP_484022.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
palustris HaA2]
gi|86570554|gb|ABD05111.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
palustris HaA2]
Length = 235
Score = 190 bits (483), Expect = 9e-47, Method: Composition-based stats.
Identities = 58/230 (25%), Positives = 114/230 (49%), Gaps = 11/230 (4%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64
D ++F + F+FL+LR VLG++TG+E+P + + + + + ++++
Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDTNVVSMPGSVIDQ 61
Query: 65 ------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
D + + L + + + + FD FL+ A+ +YE IV +F
Sbjct: 62 SPIAPSADVVPPSDRWKGIAEPDSPLEHGLNAVFTQDSSFDANHFLSGAKGAYEMIVMAF 121
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
G A++ L+ S VY+ F ++ R+ NE ++ V I+ +++ A + ++ +T+
Sbjct: 122 ANGDRRALKDLLSSEVYESFEAAIKDREKNELKTETRFVAIEKAELLGAEVRDHVAQLTV 181
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ V Q IS + DK ++ P+ + D+WTF R+I +PNW L+ T
Sbjct: 182 KFVSQMISVTRDKAGAVVDGSPDKVADITDVWTFARDISSRDPNWKLVGT 231
>gi|144900161|emb|CAM77025.1| Mitochondrial import inner membrane translocase, subunit Tim44
[Magnetospirillum gryphiswaldense MSR-1]
Length = 243
Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 105/228 (46%)
Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
+ I+ FA + F+ L+LR VLGK+TGNE+P + K D +T
Sbjct: 1 MNDGFHALDIVFFAVVAVFLILRLRSVLGKRTGNEEPPRWTRTPKDDGETADNVIDLTRA 60
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
+ + D ++ L + I + F FL+ AR ++E IV +F G
Sbjct: 61 RRPVEAEPDVTADVAATAGPLARGEAAIRARDPSFSNTGFLSGARMAFEMIVGAFAAGDK 120
Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
A+ L+ +VY+ F D++ R + + + ++GI +II A + +T+R V +
Sbjct: 121 KALRPLLADQVYKPFCDAIDARARAGEELSTEIMGIKSAEIIEAIMVGTVAQVTVRFVSE 180
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
I+ D D ++ DP V D WTF R+ +PNW L +T+
Sbjct: 181 QINVIKDLDGRIVEGDPSRIVPVTDEWTFSRDTRSKDPNWHLSATRAV 228
>gi|319780601|ref|YP_004140077.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
ciceri biovar biserrulae WSM1271]
gi|317166489|gb|ADV10027.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
ciceri biovar biserrulae WSM1271]
Length = 235
Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 71/235 (30%), Positives = 119/235 (50%), Gaps = 8/235 (3%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT---- 61
M DF + F +F QLR VLG++TG+E+P +S K +
Sbjct: 1 MGFFDFGTIFFLIAAVVIFFQLRNVLGRRTGSERPPFDPYSAARTGDKDAAQKSENVVSL 60
Query: 62 ----LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117
D +I+ T LNK +R I F+PK F++ A+ +YE IV +
Sbjct: 61 PRKRPPGEPAPDAYAAIDAFAKPDTDLNKGLRTIKDNDPSFEPKGFVDGAKMAYEMIVMA 120
Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
+ +G ++ L+ VY F ++ R++ + ++SS VGID I++A ++ ++T
Sbjct: 121 YADGDRKTLKNLLSREVYDGFVAAIGEREAKAEKIQSSFVGIDKADIVSAEMKGGEAHVT 180
Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+RI+ + ISA+ DK +I DPE +V D+WTF R+ +PNW L++T+ +
Sbjct: 181 LRIISELISATRDKAGAVIDGDPETVAEVKDVWTFARDTRSRDPNWKLVATEEED 235
>gi|84501205|ref|ZP_00999410.1| transporter, Tim44 family protein [Oceanicola batsensis HTCC2597]
gi|84390496|gb|EAQ02984.1| transporter, Tim44 family protein [Oceanicola batsensis HTCC2597]
Length = 220
Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 9/225 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M+S +L+ A I F+ L+LR VLG + G EK + + + G
Sbjct: 1 MNSPIIQLLVLAGIAVFLILRLRSVLGTREGFEKTP---VTRSGPSNSEARGNFEVIEGG 57
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
D +D + P + + + + F +FL AR +YE I+ F G++
Sbjct: 58 PDPDIVDHV----PEDSPAAGALARMKQLEPSFSVGEFLGGARGAYEMILMGFERGEMAE 113
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183
I+ + VY+ F ++ R + +++ VG+ ++++++A +++ +T+R VGQ
Sbjct: 114 IKPFLSEEVYESFAHVVNERDAKGLTIEADFVGVKELQLVDAELDDTSREGELTVRFVGQ 173
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
A D+ +I DP+ D+WTF R + +PNW L++T
Sbjct: 174 LTFAVRDRAGEVIEGDPKSIKTQRDVWTFARKMGSDDPNWQLVAT 218
>gi|316931716|ref|YP_004106698.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
palustris DX-1]
gi|315599430|gb|ADU41965.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
palustris DX-1]
Length = 258
Score = 190 bits (481), Expect = 1e-46, Method: Composition-based stats.
Identities = 64/233 (27%), Positives = 119/233 (51%), Gaps = 11/233 (4%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64
D ++F + F+FL+LR VLG++TGNE+P + + + S + + +I++
Sbjct: 25 DIYTIIFLALAVFIFLRLRNVLGQRTGNERPPFDRAAARDMISGKQDNNVISMPGTVIDQ 84
Query: 65 ------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
D + + L + I + FD + F++ A+++YE IV +F
Sbjct: 85 APIAPNADVVPPSDRWKGIAEPDSELEHGLNAIAQHDSSFDARHFVDGAKSAYEMIVMAF 144
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
G ++ L+ S VY+ F+ ++ R+ N+ V+S V I+ ++I+A + + T +T+
Sbjct: 145 ANGDRRSLRDLLSSEVYESFDAAIKDREKNDLKVESRFVAIEKAELISAELRDRTAMLTL 204
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ V Q ISA+ DK ++ P+ + D+WTF R+ +PNW L+ T G
Sbjct: 205 KFVSQMISATRDKTGAVVDGSPDKVTDITDVWTFARDTSSRDPNWKLVGTGSG 257
>gi|218673282|ref|ZP_03522951.1| import inner membrane translocase subunit Tim44 [Rhizobium etli
GR56]
Length = 234
Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 80/231 (34%), Positives = 125/231 (54%), Gaps = 6/231 (2%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG------I 59
M S DF+ L F +F QLR VLG++TGNEKP ++ +
Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ +D +I+ + GT LN+ +R + F+PK+FLN AR +YE IV ++
Sbjct: 61 RRDATAEDEDRFAAIDAVAAPGTPLNESLRALNKADPSFNPKEFLNGARMAYEMIVMAYA 120
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
+G ++ L+ VY F+ ++ R++ + VKS+ VGID +I +A + + IT+R
Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
IV Q ISA+YDK + LI D E +V D+WTF R+ +PNW L++T+
Sbjct: 181 IVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATES 231
>gi|192288736|ref|YP_001989341.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
palustris TIE-1]
gi|192282485|gb|ACE98865.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
palustris TIE-1]
Length = 235
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 60/233 (25%), Positives = 117/233 (50%), Gaps = 11/233 (4%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK----- 64
D ++F + F+FL+LR VLG++TG+E+P + + + + + ++++
Sbjct: 2 DIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDNNVVSMPGTVIDQ 61
Query: 65 ------GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
D + + L + I + FD + F+ A+++YE IV +F
Sbjct: 62 APMAPNADVVPPSDRWKGIAEPDSELEHGLNAIAQNDSSFDAQHFITGAKSAYEMIVMAF 121
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
G ++ L+ S VY+ F+ ++ R+ N+ V++ V I+ ++I+A + + T +T+
Sbjct: 122 ANGDRRSLRDLLSSEVYESFDAAIKDREKNDLKVETRFVSIEKAELISAELRDRTAMLTL 181
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ V Q ISA+ DK ++ P+ + D+WTF R+ +PNW L+ T G
Sbjct: 182 KFVSQMISATRDKTGAVVDGSPDKVVDITDVWTFARDTSSRDPNWKLVGTGSG 234
>gi|312115344|ref|YP_004012940.1| import inner membrane translocase subunit Tim44 [Rhodomicrobium
vannielii ATCC 17100]
gi|311220473|gb|ADP71841.1| import inner membrane translocase subunit Tim44 [Rhodomicrobium
vannielii ATCC 17100]
Length = 233
Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats.
Identities = 57/233 (24%), Positives = 110/233 (47%), Gaps = 7/233 (3%)
Query: 6 MDSGDFLI--LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFS-----KRDERG 58
M S F + +L + +FL+LR VLG++TG+E+ ++ +
Sbjct: 1 MTSEIFDLTNILLLAVAVAIFLRLRSVLGRRTGDEETRLDNYARDAAPTRDNVVPLPRAE 60
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
G ++D P + + +R I + FD F+N A+ +YE+I+ ++
Sbjct: 61 PRPGGAPSAGPSVDERLGNVPADSAVRAPLRQIATSDPSFDTASFVNGAKIAYESIITAY 120
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
+G + L+ V+ FN ++ R+++ + V+ +GI +I+ A + + +
Sbjct: 121 AKGDRETLRHLLAPEVFDSFNVVINDREASGETVEFHFIGISSSEIVEAQLLGRVAQVKV 180
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
R V ++A+ DK ++ D + +V DIWTF R++ NPNW L++T
Sbjct: 181 RFVSDLVTATRDKHGEVVDGDDKAVRQVTDIWTFSRDVSSPNPNWQLVATDAA 233
>gi|222084209|ref|YP_002542735.1| translocase transmembrane protein [Agrobacterium radiobacter K84]
gi|221721657|gb|ACM24813.1| translocase transmembrane protein [Agrobacterium radiobacter K84]
Length = 233
Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats.
Identities = 78/233 (33%), Positives = 129/233 (55%), Gaps = 6/233 (2%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI------ 59
M + DF+ + F +F QLR VLG++TGNEKP + + +
Sbjct: 1 MGANDFVTIFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYGSPDQATGPNAPDAGKVVTL 60
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ +D +I+ P GT LN +R++ F PK+F+N AR +YE IV +F
Sbjct: 61 PRRDATEDEDRFAAIDAFTPAGTPLNDSLRELNKADPSFSPKEFVNGARMAYEMIVMAFA 120
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
+G +A++ L+ VY+ F+ +++ R++ + VKS+ VGID I++A +++ +T+R
Sbjct: 121 DGDRNALKGLLSREVYEGFDAAITDRETKGEKVKSTFVGIDKADIVSAEMKDTEATVTMR 180
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
IV Q ISA+YDK LI D E ++ D+WTF R+ +PNW L++T+ +
Sbjct: 181 IVSQMISATYDKAGTLIDGDAETVAEISDVWTFARDSRSRDPNWKLVATESEQ 233
>gi|110635813|ref|YP_676021.1| import inner membrane translocase, subunit Tim44 [Mesorhizobium sp.
BNC1]
gi|110286797|gb|ABG64856.1| import inner membrane translocase, subunit Tim44 [Chelativorans sp.
BNC1]
Length = 235
Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats.
Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 8/235 (3%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT---- 61
M+ DF + F +F QLR VLG++TG+E+P ++ E+ +
Sbjct: 1 MEFFDFGTIFFLVAAVVIFFQLRNVLGRRTGSERPPFDPYTAGRSRPAEAEKSVKNDTVV 60
Query: 62 ----LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117
++ + I+++ GT LN+ +R I FDP F++ A+ +YE IV +
Sbjct: 61 ALPRRKGLVDEERYNIIDKVAQPGTELNRGLRAIKDADPSFDPNTFVDGAKLAYEMIVMA 120
Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
F +G ++ L+ VY+ F ++ R+ + ++SS VGID II+A ++ + ++T
Sbjct: 121 FADGDRRTLKNLLSREVYEGFVSAIDERERRSEKIESSFVGIDKATIISAEMKGSEAHVT 180
Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+RIV + ISA+ D +I DPE +V DIWTF R+ +PNW L++T+ E
Sbjct: 181 LRIVSELISATRDSGGSIIDGDPETVAEVKDIWTFARDTRSRDPNWKLVATEAEE 235
>gi|298293768|ref|YP_003695707.1| import inner membrane translocase subunit Tim44 [Starkeya novella
DSM 506]
gi|296930279|gb|ADH91088.1| import inner membrane translocase subunit Tim44 [Starkeya novella
DSM 506]
Length = 241
Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats.
Identities = 61/238 (25%), Positives = 114/238 (47%), Gaps = 16/238 (6%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER------------ 57
D ++F + F+F++LR VLG++TG E+P +S +
Sbjct: 3 DIYTIIFLALAVFIFIRLRSVLGQRTGRERPPYDPYSRRDPAKAPAGPADKVVSFPGAAE 62
Query: 58 ----GIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
+ + +G+ + + I + FD + FL AR +YE
Sbjct: 63 KPSVPEPAEATESDEPAPARWAGVAEVGSAVANGLDAIAAQERGFDAQHFLTGARAAYEM 122
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
IV +F G A+++L+ V++ F+ +++ R+ + +++ VGI+ ++II A ++ +
Sbjct: 123 IVVAFANGDRAALKELLAREVFEGFSAAIAEREQRGEKMETQFVGIEKVEIIEAGVKGRS 182
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+T+R + Q IS + DK +I DPE V D+WTF R + +PNW L++T+
Sbjct: 183 AQMTLRFLSQLISVTRDKAGRVIDGDPEQVADVTDVWTFARELGTRDPNWKLVATEAA 240
>gi|86355677|ref|YP_467569.1| putative translocase transmembrane protein [Rhizobium etli CFN 42]
gi|86279779|gb|ABC88842.1| putative translocase transmembrane protein [Rhizobium etli CFN 42]
Length = 234
Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 80/231 (34%), Positives = 121/231 (52%), Gaps = 6/231 (2%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG------I 59
M S DF+ L F +F QLR VLG++TGNEKP +S +
Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYSPREAAPPEAAEAGKVVTLP 60
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+D +I+ GT LN+ +R + F PK+FLN AR +YE +V ++
Sbjct: 61 RRDATADDEDRFSAIDAFAAPGTPLNESLRALNKADPSFSPKEFLNGARMAYEMVVMAYA 120
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
+G ++ L+ VY F ++ R++ + VKS+ VGID +I +A + + IT+R
Sbjct: 121 DGDRKTLKSLLSREVYDGFEAAIGEREARGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
IV Q ISA+YDK + LI D E +V D+WTF R+ +PNW L++T+
Sbjct: 181 IVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATES 231
>gi|116249774|ref|YP_765612.1| hypothetical protein RL0008 [Rhizobium leguminosarum bv. viciae
3841]
gi|115254422|emb|CAK05496.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 234
Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 79/231 (34%), Positives = 123/231 (53%), Gaps = 6/231 (2%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG------I 59
M S DF+ L F +F QLR VLG++TGNEKP ++ +
Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ +D +I+ GT LN+ +R + F PK+FLN AR +YE IV ++
Sbjct: 61 RRDATTEDEDRFAAIDAFAAPGTPLNESLRALNKADPAFSPKEFLNGARMAYEMIVMAYA 120
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
+G ++ L+ VY F+ ++ R++ + VKS+ VGID +I +A + + IT+R
Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
I Q ISA+YDK ++LI D E +V D+WTF R+ +PNW L++T+
Sbjct: 181 IASQLISATYDKADVLIEGDAENVAEVNDVWTFARDTRSRDPNWKLVATES 231
>gi|209551513|ref|YP_002283430.1| import inner membrane translocase subunit Tim44 [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|209537269|gb|ACI57204.1| import inner membrane translocase subunit Tim44 [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 234
Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats.
Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 6/231 (2%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG------I 59
M S DF+ L F +F QLR VLG++TGNEKP ++ +
Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ +D +I+ GT LN+ +R + F PK+FLN AR +YE IV ++
Sbjct: 61 RRDATTEDEDRFAAIDAFAAPGTPLNESLRALNKADPAFSPKEFLNGARMAYEMIVMAYA 120
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
+G ++ L+ VY F+ ++ R++ + VKS+ VGID +I +A + + IT+R
Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGERETRGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
I+ Q ISA+YDK ++LI D E +V D+WTF R+ +PNW L++T+
Sbjct: 181 IISQLISATYDKADVLIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATES 231
>gi|118591473|ref|ZP_01548870.1| Calcium-binding EF-hand [Stappia aggregata IAM 12614]
gi|118435801|gb|EAV42445.1| Calcium-binding EF-hand [Stappia aggregata IAM 12614]
Length = 230
Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats.
Identities = 75/229 (32%), Positives = 127/229 (55%), Gaps = 14/229 (6%)
Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF----SKRDERGIITLGKGKKKDNLDS 73
+ F+ +LR VLGK+TGNE+P +S + D+ +I L +D
Sbjct: 2 GLAVFILFRLRSVLGKRTGNERPPFDPYSKPDQQRDRKNGNDQDNVIPLPNQPMQDAETV 61
Query: 74 ----------INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
I+++ P G+ LN ++ I+SV F+P+ FL AR +YE IV +F +G
Sbjct: 62 EDTGRGGDVVIDKVAPAGSALNSALKQILSVDRSFEPEPFLEGARAAYEMIVMAFADGDK 121
Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
A++ L+ VY+ F ++ R+ + ++S+ VGID +I+ A+++ +T +T++I Q
Sbjct: 122 KALKNLLSREVYEGFVAAIDEREKRGETIESTFVGIDKAEIVEAALKNSTAQVTVKIHSQ 181
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
ISA+ DK+ ++ DP +VIDIWTF R+ +PNW L++T+ E
Sbjct: 182 LISATRDKNGEVVDGDPAKVSEVIDIWTFARDTTSRDPNWKLVATESAE 230
>gi|83313642|ref|YP_423906.1| hypothetical protein amb4543 [Magnetospirillum magneticum AMB-1]
gi|82948483|dbj|BAE53347.1| Uncharacterized protein [Magnetospirillum magneticum AMB-1]
Length = 281
Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats.
Identities = 60/229 (26%), Positives = 109/229 (47%), Gaps = 11/229 (4%)
Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
+ I+ FA + F+ L+LR VLGK+TG E+P + +
Sbjct: 63 MNDGYHFLDIVFFAMVAAFLVLRLRSVLGKRTGAERPPEQWTPPEAAA-----------D 111
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
++ P T + + + I + FD FL A+ ++E IV +F G
Sbjct: 112 NVVDLQSVRRSASEPPAETPMGQGLAAIRAADRGFDLDGFLGGAKAAFEMIVIAFAHGDK 171
Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
++ L+ VY+ F+D++ R+ + + +++ LVGI +++ A ++ +TIR V +
Sbjct: 172 ATLQPLLAPDVYRHFSDAIDARRQHGETLQTELVGIRTAELVEAGMDGRFAALTIRFVSE 231
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
++A D ++ +PE VID+WTF R+ ++PNW L +T E
Sbjct: 232 QVNALRDAKGEVVEGNPERVIDVIDLWTFRRDTRSADPNWALAATHTPE 280
>gi|170739669|ref|YP_001768324.1| import inner membrane translocase subunit Tim44 [Methylobacterium
sp. 4-46]
gi|168193943|gb|ACA15890.1| import inner membrane translocase subunit Tim44 [Methylobacterium
sp. 4-46]
Length = 238
Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats.
Identities = 56/235 (23%), Positives = 108/235 (45%), Gaps = 9/235 (3%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL---- 62
DS D L+F + FV +LR VLG+KTG+E+P + R +
Sbjct: 4 DSLDLTTLIFLGLAVFVIWKLRAVLGQKTGHERPPFNPLVRRREEPPPAAREDNVVRLPA 63
Query: 63 -----GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117
+ + + + + ++ FDP+ F + A+ +YE IV +
Sbjct: 64 GGDRTAAAPVATVPRNWKGVVEPNSAAARGLDLVLQQEPGFDPRAFTDGAKIAYETIVMA 123
Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
F +G ++ L+ V + F ++ R+ ++V+++ V ID +I+ + IT
Sbjct: 124 FAKGDRRTLKSLLSREVAEGFERAIQARERAGQSVETTFVSIDRAEIVGVDLRNRVAQIT 183
Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+R + + I+A+ + ++ P+ V D+WTF R + +PNW L++T+ G+
Sbjct: 184 VRYLSKLITATRNAQGAVVDGSPDTVVDVTDVWTFARTLGSRDPNWQLVATEAGQ 238
>gi|241206951|ref|YP_002978047.1| import inner membrane translocase subunit Tim44 [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240860841|gb|ACS58508.1| import inner membrane translocase subunit Tim44 [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 234
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 79/231 (34%), Positives = 123/231 (53%), Gaps = 6/231 (2%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG------I 59
M S DF+ L F +F QLR VLG++TGNEKP ++ +
Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ +D +I+ GT LN+ +R + F PK+FLN AR +YE IV ++
Sbjct: 61 RRDATTEDEDRFAAIDAFAAPGTPLNESLRALNKADPAFTPKEFLNGARMAYEMIVMAYA 120
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
+G ++ L+ VY F+ ++ R++ + VKS+ VGID +I +A + + IT+R
Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGSEAQITVR 180
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
I Q ISA+YDK ++LI D E +V D+WTF R+ +PNW L++T+
Sbjct: 181 IASQLISATYDKADVLIEGDAENVAEVNDVWTFARDTRSRDPNWKLVATES 231
>gi|227823867|ref|YP_002827840.1| putative import inner membrane translocase, subunit Tim44
[Sinorhizobium fredii NGR234]
gi|227342869|gb|ACP27087.1| putative import inner membrane translocase, subunit Tim44
[Sinorhizobium fredii NGR234]
Length = 233
Score = 187 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 123/231 (53%), Gaps = 6/231 (2%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG-- 63
M S DF+ F +FLQLR VLG++TGNE+P +S + +
Sbjct: 1 MGSFDFITFFFLIAAVVIFLQLRSVLGRRTGNERPPFDPYSPREAQGPEARDNGKVVQLP 60
Query: 64 ----KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ + +I+ GT LN +R + F P +FLN A+ +YE IV +F
Sbjct: 61 RRESTAEDESRYAAIDGFSKPGTPLNGQLRALSDADPSFQPAEFLNGAKMAYEMIVMAFA 120
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
+G ++ L+ VY+ F +++ R++ + VKS+ VGI+ I++A +++ +T+R
Sbjct: 121 DGDRKTLKGLLSREVYEGFETAIAERETRGEVVKSTFVGIEKADIVHAELKDAEENVTVR 180
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
I+ Q ISA+YDK LI D + +V D+WTF R+I +PNW LI+T+
Sbjct: 181 IISQLISATYDKQGKLIDGDADSVAEVNDLWTFARDIRSRDPNWKLIATES 231
>gi|220921009|ref|YP_002496310.1| import inner membrane translocase subunit Tim44 [Methylobacterium
nodulans ORS 2060]
gi|219945615|gb|ACL56007.1| import inner membrane translocase subunit Tim44 [Methylobacterium
nodulans ORS 2060]
Length = 241
Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 13/239 (5%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG-------- 58
DS D L+F + FV +LR VLG+KTGNE+P + R
Sbjct: 3 DSLDLTTLIFLGLAVFVIWKLRSVLGQKTGNERPPFNPLLRRREEPPPAPREGGDNVVRL 62
Query: 59 -----IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
+ + + + + ++ FDP+ F + A+ +YE
Sbjct: 63 PGAGADRGAAAPVAATVPRNWKGVVEPNSPAARGLDLVLQQEPSFDPRAFTDGAKVAYET 122
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
IV +F +G ++ L+ V F ++ R+ + V+++ V ID +I+ +
Sbjct: 123 IVMAFAKGDRKTLKSLLSREVADGFERAIQARERAGQTVETTFVSIDRAEIVGVDVRNRV 182
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
IT+R + + I+A+ + ++ P+ V D+WTF R + +PNW L++T+ G+
Sbjct: 183 AQITVRFLSKLITATRNPQGAVVDGSPDTVVDVTDVWTFARTLGSRDPNWQLVATEAGQ 241
>gi|126463660|ref|YP_001044774.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
sphaeroides ATCC 17029]
gi|332559713|ref|ZP_08414035.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
sphaeroides WS8N]
gi|126105324|gb|ABN78002.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
sphaeroides ATCC 17029]
gi|332277425|gb|EGJ22740.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
sphaeroides WS8N]
Length = 219
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 10/225 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M S +L+ A I F+ ++L+ VLG + G EKP K R R + G
Sbjct: 1 MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPAVPLEDPKP----RTRRDFEVIEGG 56
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
+D +D + + G+ K + + F +FL AR +YE IV +F +G++
Sbjct: 57 PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLTGARGAYEMIVMAFEKGELEQ 112
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQ 183
I + V++ F +++ R++ +V+++ +G+ ++ I AS + +T + +R VG+
Sbjct: 113 IRPFLSPDVFESFEEAVKAREAEGLSVEATFLGLREIDIHEASFDRDTRVGQVAVRFVGE 172
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
S D+ +I P + D+WTF R + ++PNW L++T
Sbjct: 173 LTSVVRDRTGQVIEGSPTEVKRQRDVWTFERRMGANDPNWQLVAT 217
>gi|77464817|ref|YP_354321.1| hypothetical protein RSP_1239 [Rhodobacter sphaeroides 2.4.1]
gi|77389235|gb|ABA80420.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
Length = 219
Score = 186 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 61/225 (27%), Positives = 112/225 (49%), Gaps = 10/225 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M S +L+ A I F+ ++L+ VLG + G EKP K R R + G
Sbjct: 1 MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPAVPLEDPKP----RTRRDFEVIEGG 56
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
+D +D + + G+ K + + F +FL AR +YE IV +F +G++
Sbjct: 57 PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLTGARGAYEMIVMAFEKGELEQ 112
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQ 183
I + S V++ F +++ R++ +V+++ +G+ ++ I AS + +T + +R VG+
Sbjct: 113 IRPFLSSDVFESFEEAVKAREAEGLSVEATFLGLREIDIHEASFDRDTRVGQVAVRFVGE 172
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
S D+ +I P + D+WTF R + ++PNW L++T
Sbjct: 173 LTSVVRDRTGQVIEGSPTEVKRQRDVWTFERRMGANDPNWQLVAT 217
>gi|163797060|ref|ZP_02191015.1| hypothetical protein BAL199_11141 [alpha proteobacterium BAL199]
gi|159177576|gb|EDP62129.1| hypothetical protein BAL199_11141 [alpha proteobacterium BAL199]
Length = 222
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 55/224 (24%), Positives = 107/224 (47%), Gaps = 4/224 (1%)
Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
I+L A + FV +LR VLG++TG+E+ + F+ + + +
Sbjct: 2 PYLDIILLAMLAGFVIFKLRSVLGRRTGHERRPTDPFAESPETNDNGNIVRLPDRSAESV 61
Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
D D G+ + + I FD + FL A++++ IV++F +G V +
Sbjct: 62 DGSDDDV----PGSSMAAGIMQIKLADDGFDERQFLQGAKSAFAMIVEAFAKGDVDGLRP 117
Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
L+ +Y F ++ + + ++++V I ++ AS+E + +T+ V + + +
Sbjct: 118 LLSRELYGGFASAIEACEKAGEIQETTIVTIRSADVVEASLENSVAKVTVEFVTEQVKVT 177
Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
D +I DP+ + DIWTF R+I +PNW L++T++ E
Sbjct: 178 RSSDGEVIDGDPDRIDILTDIWTFARDIGNRDPNWELVATRVPE 221
>gi|150398408|ref|YP_001328875.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
medicae WSM419]
gi|150029923|gb|ABR62040.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
medicae WSM419]
Length = 234
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 79/232 (34%), Positives = 128/232 (55%), Gaps = 7/232 (3%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG------- 58
M S DF+ F +FLQLR VLG++TG+E+P +S + + + +
Sbjct: 1 MGSFDFITFFFLIAAVVIFLQLRSVLGRRTGSERPPFDPYSSRDIAQGPEAKDNGKVVQL 60
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
G + + I + GT LN +R + +F+P +FLN A+ +YE IV +F
Sbjct: 61 PRRDGAAEDESRYAEIETVAKAGTPLNAQLRAVTDADPNFNPVEFLNGAKMAYEMIVMAF 120
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
+G ++ L+ VY+ F +++ R++ + VKS+ VGID I++A I+++ IT+
Sbjct: 121 ADGDRKTLKGLLSREVYEGFEAAIAERENKGEVVKSTFVGIDKADIVHAEIKDSEENITV 180
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
RI+ Q ISA+YDK L+ D E +V D+WTF R+I +PNW LI+T+
Sbjct: 181 RIISQLISATYDKQGKLVDGDAESVAEVNDLWTFSRDIRSRDPNWKLIATES 232
>gi|146278709|ref|YP_001168868.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
sphaeroides ATCC 17025]
gi|145556950|gb|ABP71563.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
sphaeroides ATCC 17025]
Length = 219
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 59/225 (26%), Positives = 113/225 (50%), Gaps = 10/225 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M S +L+ A I F+ ++L+ VLG + G EKP + R R + G
Sbjct: 1 MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPPVPLEDPRP----RPRREFEVIEGG 56
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
+D +D + + G+ K + + F +FL AR +YE IV +F +G++
Sbjct: 57 PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLTGARGAYEMIVMAFEKGELEQ 112
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183
I + + V++ F D+++ R++ +V+++ +G+ ++ I AS E I +R VG+
Sbjct: 113 IRPFLSAEVFESFEDAVNAREAEGLSVEANFLGLREIDIHEASFERDSRIGQIAVRFVGE 172
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
S +++ ++ P + D+WTF R++ ++PNW L++T
Sbjct: 173 LTSVVRNREGQVVEGSPTEIKRQRDVWTFERHMGANDPNWQLVAT 217
>gi|221640736|ref|YP_002526998.1| Import inner membrane translocase subunit Tim44 [Rhodobacter
sphaeroides KD131]
gi|221161517|gb|ACM02497.1| Import inner membrane translocase, subunit Tim44 precursor
[Rhodobacter sphaeroides KD131]
Length = 219
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 10/225 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M S +L+ A I F+ ++L+ VLG + G EKP K R R + G
Sbjct: 1 MSSSLIQLLVLAGIAVFLIIKLKSVLGTREGFEKPAVPLEDPKP----RTRRDFEVIEGG 56
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
+D +D + + G+ K + + F +FL AR +YE IV +F +G++
Sbjct: 57 PDRDIIDHVTD----GSPSAKALAGMKMAEPGFSVSEFLIGARGAYEMIVMAFEKGELEQ 112
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQ 183
I + V++ F +++ R++ +V+++ +G+ ++ I AS + +T + +R VG+
Sbjct: 113 IRPFLSPDVFESFEEAVKAREAEGLSVEATFLGLREIDIHEASFDRDTRVGQVAVRFVGE 172
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
S D+ +I P + D+WTF R + ++PNW L++T
Sbjct: 173 LTSVVRDRTGQVIEGSPTEVKRQRDVWTFERRMGANDPNWQLVAT 217
>gi|46201691|ref|ZP_00054533.2| COG4395: Uncharacterized protein conserved in bacteria
[Magnetospirillum magnetotacticum MS-1]
Length = 219
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 58/229 (25%), Positives = 108/229 (47%), Gaps = 11/229 (4%)
Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
+ I+ FA + F+ L+LR VLGK+TG E+P ++
Sbjct: 1 MNDGYHFLDIVFFAMVAAFLVLRLRSVLGKRTGTERPP-----------EKWSPVEAPAD 49
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
++ P T L + + I + FD FL A+ ++E IV +F G
Sbjct: 50 NVVDLQSVRRSASEPPAETPLGQGLAAIRAADRGFDLDGFLGGAKAAFEMIVIAFAHGDK 109
Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
++ L+ VY+ F++++ R+ + + +++ LVGI +++ A ++ +TI+ V +
Sbjct: 110 ATLQPLLAPDVYRHFSEAIDARRQHGETLQTELVGIRSAELVEAGMDGRFAALTIKFVSE 169
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
++A D ++ +PE VID+WTF R+ +PNW L +T +
Sbjct: 170 QVNALRDAKGEVVEGNPERVIDVIDLWTFRRDTRSPDPNWALTATHTPD 218
>gi|260431955|ref|ZP_05785926.1| transporter, Tim44 family [Silicibacter lacuscaerulensis ITI-1157]
gi|260415783|gb|EEX09042.1| transporter, Tim44 family [Silicibacter lacuscaerulensis ITI-1157]
Length = 219
Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 59/227 (25%), Positives = 113/227 (49%), Gaps = 10/227 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M+S +L+ A I F+ L+L+ VLG + G EKP + + + R + G
Sbjct: 1 MNSPLIQLLVLAGIAIFLILRLKSVLGTREGFEKPPVP----QQPAASKSRRDFEVIDGG 56
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
+D D + P + + + + + V F +FL AR++YE IV F G +
Sbjct: 57 PDRDITDHV----PEDSEIAQTLAAMKRVEPSFSVSEFLQGARSAYEMIVMGFERGNLDE 112
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183
I+ + V++ F ++ R+ ++++ +G+ +M +++A +++T IT+R VG+
Sbjct: 113 IQPFLSEEVFETFVSVVAEREDKGLSIEAEFIGVREMALVDAQFDKDTNRAEITVRFVGE 172
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
S D+D ++ +P + D WTF R + +PNW+L++T
Sbjct: 173 LTSVVRDRDGNIVEGNPNTIKRQKDSWTFARVMGADDPNWLLVATDA 219
>gi|288959728|ref|YP_003450069.1| mitochondrial import inner membrane translocase [Azospirillum sp.
B510]
gi|288912036|dbj|BAI73525.1| mitochondrial import inner membrane translocase [Azospirillum sp.
B510]
Length = 231
Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 53/231 (22%), Positives = 107/231 (46%), Gaps = 2/231 (0%)
Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
+ I++FA I F+ +LR VLG++TG E+ FS +K D +
Sbjct: 1 MGDGFVFIEIVIFAMIAAFLVYRLRSVLGRRTGEERQRPNPFSAAPGAAKPDNVVSLPQR 60
Query: 64 KGKKKDNLDSINELFPIGT-RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
+ D + + L + I + FD K FL+ A+ ++ IVD+F G
Sbjct: 61 NQPRPDAAPGQDVMASDEPLSLAASIDQIRAADPTFDEKHFLDGAKAAFAMIVDAFARGD 120
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE-NTVYITIRIV 181
+ L+ VY F + R++ + ++ + + + +++ A ++ T +T+R+V
Sbjct: 121 TATLRPLLADDVYDGFARVIRDRQAAGEQHETRIEQVREAEVVEAKLDAGRTARVTVRLV 180
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
++ D++ ++ DP+ + D+WTF R++ +PNW L+ + +
Sbjct: 181 SDQVNVVRDRNGAVVDGDPKALVENTDVWTFARDLRSRDPNWALVEVRPVQ 231
>gi|15963761|ref|NP_384114.1| putative translocase transmembrane protein [Sinorhizobium meliloti
1021]
gi|307302564|ref|ZP_07582321.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
meliloti BL225C]
gi|307316105|ref|ZP_07595549.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
meliloti AK83]
gi|15072936|emb|CAC41395.1| Import inner membrane translocase subunit TIM44 [Sinorhizobium
meliloti 1021]
gi|306897945|gb|EFN28687.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
meliloti AK83]
gi|306903234|gb|EFN33824.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
meliloti BL225C]
Length = 233
Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 77/231 (33%), Positives = 127/231 (54%), Gaps = 6/231 (2%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI------ 59
M S DF+ F +FLQLR VLG++TG+E+P +S + + + +
Sbjct: 1 MGSFDFITFFFLIAAVVIFLQLRSVLGRRTGSERPPFDPYSPRDIAQGPEAKDNGKVVQL 60
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ + +I + GT LN +R + +F+P +FLN A+ +YE IV +F
Sbjct: 61 PRRETAEDESRYAAIEIVAKAGTPLNAQLRAMTDADPNFNPAEFLNGAKMAYEMIVMAFA 120
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
+G ++ L+ VY+ F +++ R++ + VKS+ VGID I++A I++ IT+R
Sbjct: 121 DGDRKTLKGLLSREVYEGFEAAIAEREAKGEVVKSTFVGIDKADIVHAEIKDAEENITVR 180
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
I+ Q ISA+YDK L+ D + +V D+WTF R+I +PNW LI+T+
Sbjct: 181 IISQLISATYDKQGKLVDGDADSVAEVNDLWTFARDIRSRDPNWKLIATES 231
>gi|159045985|ref|YP_001534779.1| import inner membrane translocase [Dinoroseobacter shibae DFL 12]
gi|157913745|gb|ABV95178.1| import inner membrane translocase [Dinoroseobacter shibae DFL 12]
Length = 221
Score = 184 bits (466), Expect = 8e-45, Method: Composition-based stats.
Identities = 55/225 (24%), Positives = 104/225 (46%), Gaps = 8/225 (3%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M+S IL+ + F+ L+LR VLG + G EK + + R R + G
Sbjct: 1 MNSNMLQILVLLGVAVFLILRLRSVLGTREGFEKKPVPLDGPERDVTPR--RDFEVIEGG 58
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
D D + P G+ K + + F+ +FL A+ +YE I+ SF G +
Sbjct: 59 PDTDITDHV----PDGSDSAKALAAMKMAEPGFNVTEFLGGAKGAYEWILMSFENGDMDD 114
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183
++ + + + F++ + R V++ VG+ + ++ A+ + +T +T+R VG+
Sbjct: 115 VQGFLSEELSEAFSEVIEQRNEQGLTVEAEFVGVRETTLVEAAFDRDTREGEVTVRFVGE 174
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ + ++ DP + D+WTF R + +PNW L++T
Sbjct: 175 LTFVVRNAEGEIVEGDPTEIKRQKDVWTFARVMGSDDPNWRLVAT 219
>gi|126724535|ref|ZP_01740378.1| import inner membrane translocase, subunit Tim44 [Rhodobacterales
bacterium HTCC2150]
gi|126705699|gb|EBA04789.1| import inner membrane translocase, subunit Tim44 [Rhodobacterales
bacterium HTCC2150]
Length = 236
Score = 184 bits (466), Expect = 9e-45, Method: Composition-based stats.
Identities = 59/228 (25%), Positives = 116/228 (50%), Gaps = 10/228 (4%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F KM S +L+ A I F+ L+L+ VLG + G EKP + + + + + +
Sbjct: 15 FTKMGSSMIQLLVLAGIAVFLILRLKNVLGTREGFEKPRAP----QGQAQQSNRPQLEVV 70
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
G +D I E I + + +I + +F ++FL A+ +YE I+ +F GK
Sbjct: 71 ENGPDQD----IAEYVEIDSEAGMALAEIKAQDRNFTVQEFLGGAKGAYEMILIAFEGGK 126
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRI 180
+ +E + V + F + ++ R+ V ++ +G+ +M + +A+++ T +T++
Sbjct: 127 LSDVEPFLSEEVMESFVEVVADREDQGLTVTANFIGLREMAVHDATLDPITNIAEVTVKF 186
Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
VG+ S ++ + ++ D + + DIWTF R++ NPNW L++T
Sbjct: 187 VGEMTSVVHNAEGEVVEGDEKTIKRQKDIWTFARDLGDDNPNWQLVAT 234
>gi|83942018|ref|ZP_00954480.1| transporter, Tim44 family protein [Sulfitobacter sp. EE-36]
gi|83953067|ref|ZP_00961789.1| transporter, Tim44 family protein [Sulfitobacter sp. NAS-14.1]
gi|83842035|gb|EAP81203.1| transporter, Tim44 family protein [Sulfitobacter sp. NAS-14.1]
gi|83847838|gb|EAP85713.1| transporter, Tim44 family protein [Sulfitobacter sp. EE-36]
Length = 219
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 105/226 (46%), Gaps = 10/226 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M+S +L+ A I F+ L+L+ VLG +TG EKP + + G
Sbjct: 1 MNSPMIQLLVLAAIAVFLILRLKNVLGTRTGFEKPA----EVSEKPERPSGPAFEVIEGG 56
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
D D P G+ + ++ V F DFL AR +YE IV + G +
Sbjct: 57 PDLDITDH----APEGSDTALALAEMKRVEPSFGVSDFLGGARGAYEMIVMGYEHGNLDE 112
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183
I+ + +Y+ F + ++ R+ V+S +GI +M++ NA++++ T +TIR V +
Sbjct: 113 IKPFLSEDIYESFVEGVAAREDQGLTVESHFIGIREMELENATMDKTTNEAELTIRFVAE 172
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
S D+D ++ + D W F R + +PNW+L+ST
Sbjct: 173 LTSVVKDRDGEIVEGSTTEVNRQKDTWVFARVMGSDDPNWLLVSTD 218
>gi|254486605|ref|ZP_05099810.1| transporter, Tim44 family [Roseobacter sp. GAI101]
gi|214043474|gb|EEB84112.1| transporter, Tim44 family [Roseobacter sp. GAI101]
Length = 219
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 10/226 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M+S +L+ A I F+ L+L+ VLG + G EK K + G
Sbjct: 1 MNSPMIQLLVLAGIAVFLILRLKNVLGTREGFEKKP----EIDAKPQKPSGPAFEVIEGG 56
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
D D P G+ + ++ V F DFL AR +YE IV F G +
Sbjct: 57 PDLDITDH----APEGSDTALALAEMKRVEPSFGVSDFLGGARGAYEMIVMGFEHGNLDD 112
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183
I+ + ++ F D ++ R+ V+S+ +GI +M++ NA++++ T +TIR V +
Sbjct: 113 IKPFLSEDIFDSFVDGIAAREDQGLTVESTFIGIREMELENATMDKATKEAELTIRFVAE 172
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
S DKD ++I P + D W F R + +PNW+L+ST
Sbjct: 173 MTSVVKDKDGMVIEGSPTEVKRQKDTWVFARVMGSDDPNWLLVSTD 218
>gi|23502922|ref|NP_699049.1| hypothetical protein BR2074 [Brucella suis 1330]
gi|82700829|ref|YP_415403.1| calcium-binding EF-hand [Brucella melitensis biovar Abortus 2308]
gi|225626454|ref|ZP_03784493.1| import inner membrane translocase subunit Tim44 [Brucella ceti str.
Cudo]
gi|237816425|ref|ZP_04595418.1| Tim44-like domain protein [Brucella abortus str. 2308 A]
gi|256370472|ref|YP_003107983.1| hypothetical protein BMI_I2096 [Brucella microti CCM 4915]
gi|23348955|gb|AAN30964.1| conserved hypothetical protein [Brucella suis 1330]
gi|82616930|emb|CAJ12031.1| Calcium-binding EF-hand [Brucella melitensis biovar Abortus 2308]
gi|225618111|gb|EEH15154.1| import inner membrane translocase subunit Tim44 [Brucella ceti str.
Cudo]
gi|237788492|gb|EEP62707.1| Tim44-like domain protein [Brucella abortus str. 2308 A]
gi|256000635|gb|ACU49034.1| hypothetical protein BMI_I2096 [Brucella microti CCM 4915]
Length = 235
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 68/217 (31%), Positives = 124/217 (57%), Gaps = 4/217 (1%)
Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
+FLQLR VLG++TGNEKP + S + + +++L + + + +I+
Sbjct: 19 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 78
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY
Sbjct: 79 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 138
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
+ F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D +
Sbjct: 139 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 198
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
I DP+ ++ D+WTF R+ +PNW L++T+ +
Sbjct: 199 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 235
>gi|89067415|ref|ZP_01154928.1| transporter, Tim44 family protein [Oceanicola granulosus HTCC2516]
gi|89046984|gb|EAR53038.1| transporter, Tim44 family protein [Oceanicola granulosus HTCC2516]
Length = 220
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 108/225 (48%), Gaps = 9/225 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M+S +L+ A I F+ L+LR VLG + G EKP + R + + G
Sbjct: 1 MNSPIIQLLVLAGIAVFLILRLRSVLGTREGFEKPPVTESDR---SALRRRPDLEVIEGG 57
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
+D +D ++ G+ + + F DFL AR +YE I+ +F G +
Sbjct: 58 PDRDIVDHVD----AGSDAADALARMKRAEPAFGVGDFLGGARGAYEMILMAFENGDLSE 113
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183
++ + VY+ F+ + R+ +V+++ VG+ ++ + +A +E T +T+R G+
Sbjct: 114 VKDFLGPEVYEAFSQVIEERRERGLHVEATFVGLSEITLKDAEFDETTREAELTVRFTGE 173
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
S D ++ P + D+WTF R + ++PNW+L++T
Sbjct: 174 ITSVVRDAGGDIVEGSPTEIKRQRDVWTFARTMGANDPNWILVAT 218
>gi|56698697|ref|YP_169074.1| Tim44 family protein [Ruegeria pomeroyi DSS-3]
gi|56680434|gb|AAV97100.1| transporter, Tim44 family [Ruegeria pomeroyi DSS-3]
Length = 218
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 11/227 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M+S +L+ A I F+ L+L+ VLG + G EKP R R + G
Sbjct: 1 MNSPLIQLLVLAGIAIFLILRLKSVLGTREGFEKPPVPQ-----QPENRTRRDFEVIEGG 55
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
+D D + E P + + + + F +F+ AR +YE IV F G +
Sbjct: 56 PDRDITDHVPEDSPQ----AQALAAMKRIEPAFSVSEFVQGARGAYEMIVMGFERGNLDE 111
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183
IE + V++ F ++ R+ +++ +G+ + I + ++++ IT+R VG+
Sbjct: 112 IEPFLTEEVFETFVGVVAAREDQGLTIEAEFIGVRETSIQDVHFDKDSNRGEITMRFVGE 171
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
S D+ +I P + D+WTF R + +PNW+L++T
Sbjct: 172 LTSVVRDRGGDVIEGSPTAVKRQKDVWTFARVMGTDDPNWLLVATDA 218
>gi|161619988|ref|YP_001593875.1| import inner membrane translocase subunit Tim44 [Brucella canis
ATCC 23365]
gi|163844092|ref|YP_001628496.1| import inner membrane translocase subunit Tim44 [Brucella suis ATCC
23445]
gi|189025131|ref|YP_001935899.1| Calcium-binding EF-hand [Brucella abortus S19]
gi|254690207|ref|ZP_05153461.1| Calcium-binding EF-hand [Brucella abortus bv. 6 str. 870]
gi|254694697|ref|ZP_05156525.1| Calcium-binding EF-hand [Brucella abortus bv. 3 str. Tulya]
gi|254696324|ref|ZP_05158152.1| Calcium-binding EF-hand [Brucella abortus bv. 2 str. 86/8/59]
gi|254700706|ref|ZP_05162534.1| Calcium-binding EF-hand [Brucella suis bv. 5 str. 513]
gi|254705077|ref|ZP_05166905.1| Calcium-binding EF-hand [Brucella suis bv. 3 str. 686]
gi|254709052|ref|ZP_05170863.1| Calcium-binding EF-hand [Brucella pinnipedialis B2/94]
gi|254713521|ref|ZP_05175332.1| Calcium-binding EF-hand [Brucella ceti M644/93/1]
gi|254716123|ref|ZP_05177934.1| Calcium-binding EF-hand [Brucella ceti M13/05/1]
gi|254718117|ref|ZP_05179928.1| Calcium-binding EF-hand [Brucella sp. 83/13]
gi|254731240|ref|ZP_05189818.1| Calcium-binding EF-hand [Brucella abortus bv. 4 str. 292]
gi|256030577|ref|ZP_05444191.1| Calcium-binding EF-hand [Brucella pinnipedialis M292/94/1]
gi|256060039|ref|ZP_05450221.1| Calcium-binding EF-hand [Brucella neotomae 5K33]
gi|260169483|ref|ZP_05756294.1| Calcium-binding EF-hand [Brucella sp. F5/99]
gi|260546180|ref|ZP_05821920.1| calcium-binding EF-hand protein [Brucella abortus NCTC 8038]
gi|260567455|ref|ZP_05837925.1| calcium-binding EF-hand protein [Brucella suis bv. 4 str. 40]
gi|260755747|ref|ZP_05868095.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 6 str. 870]
gi|260758971|ref|ZP_05871319.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 4 str. 292]
gi|260760695|ref|ZP_05873038.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 2 str. 86/8/59]
gi|261215024|ref|ZP_05929305.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 3 str. Tulya]
gi|261217893|ref|ZP_05932174.1| import inner membrane translocase subunit Tim44 [Brucella ceti
M13/05/1]
gi|261316550|ref|ZP_05955747.1| import inner membrane translocase subunit Tim44 [Brucella
pinnipedialis B2/94]
gi|261321257|ref|ZP_05960454.1| import inner membrane translocase subunit Tim44 [Brucella ceti
M644/93/1]
gi|261324015|ref|ZP_05963212.1| import inner membrane translocase subunit Tim44 [Brucella neotomae
5K33]
gi|261751215|ref|ZP_05994924.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
5 str. 513]
gi|261755779|ref|ZP_05999488.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
3 str. 686]
gi|261759008|ref|ZP_06002717.1| calcium-binding EF-hand protein [Brucella sp. F5/99]
gi|265983069|ref|ZP_06095804.1| import inner membrane translocase subunit Tim44 [Brucella sp.
83/13]
gi|265987624|ref|ZP_06100181.1| import inner membrane translocase subunit Tim44 [Brucella
pinnipedialis M292/94/1]
gi|306839744|ref|ZP_07472546.1| import inner membrane translocase subunit Tim44 [Brucella sp. NF
2653]
gi|306842810|ref|ZP_07475450.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO2]
gi|306843493|ref|ZP_07476094.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO1]
gi|161336799|gb|ABX63104.1| import inner membrane translocase subunit Tim44 [Brucella canis
ATCC 23365]
gi|163674815|gb|ABY38926.1| import inner membrane translocase subunit Tim44 [Brucella suis ATCC
23445]
gi|189020703|gb|ACD73425.1| Calcium-binding EF-hand [Brucella abortus S19]
gi|260096287|gb|EEW80163.1| calcium-binding EF-hand protein [Brucella abortus NCTC 8038]
gi|260156973|gb|EEW92053.1| calcium-binding EF-hand protein [Brucella suis bv. 4 str. 40]
gi|260669289|gb|EEX56229.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 4 str. 292]
gi|260671127|gb|EEX57948.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 2 str. 86/8/59]
gi|260675855|gb|EEX62676.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 6 str. 870]
gi|260916631|gb|EEX83492.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 3 str. Tulya]
gi|260922982|gb|EEX89550.1| import inner membrane translocase subunit Tim44 [Brucella ceti
M13/05/1]
gi|261293947|gb|EEX97443.1| import inner membrane translocase subunit Tim44 [Brucella ceti
M644/93/1]
gi|261295773|gb|EEX99269.1| import inner membrane translocase subunit Tim44 [Brucella
pinnipedialis B2/94]
gi|261299995|gb|EEY03492.1| import inner membrane translocase subunit Tim44 [Brucella neotomae
5K33]
gi|261738992|gb|EEY26988.1| calcium-binding EF-hand protein [Brucella sp. F5/99]
gi|261740968|gb|EEY28894.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
5 str. 513]
gi|261745532|gb|EEY33458.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
3 str. 686]
gi|264659821|gb|EEZ30082.1| import inner membrane translocase subunit Tim44 [Brucella
pinnipedialis M292/94/1]
gi|264661661|gb|EEZ31922.1| import inner membrane translocase subunit Tim44 [Brucella sp.
83/13]
gi|306276184|gb|EFM57884.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO1]
gi|306287004|gb|EFM58515.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO2]
gi|306405204|gb|EFM61481.1| import inner membrane translocase subunit Tim44 [Brucella sp. NF
2653]
Length = 231
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 68/217 (31%), Positives = 124/217 (57%), Gaps = 4/217 (1%)
Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
+FLQLR VLG++TGNEKP + S + + +++L + + + +I+
Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY
Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
+ F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D +
Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 194
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
I DP+ ++ D+WTF R+ +PNW L++T+ +
Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231
>gi|225853505|ref|YP_002733738.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis ATCC 23457]
gi|256045678|ref|ZP_05448556.1| transporter [Brucella melitensis bv. 1 str. Rev.1]
gi|256263013|ref|ZP_05465545.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis bv. 2 str. 63/9]
gi|260562979|ref|ZP_05833465.1| calcium-binding EF-hand protein [Brucella melitensis bv. 1 str.
16M]
gi|265992099|ref|ZP_06104656.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis bv. 1 str. Rev.1]
gi|225641870|gb|ACO01784.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis ATCC 23457]
gi|260152995|gb|EEW88087.1| calcium-binding EF-hand protein [Brucella melitensis bv. 1 str.
16M]
gi|263003165|gb|EEZ15458.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis bv. 1 str. Rev.1]
gi|263092886|gb|EEZ17061.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis bv. 2 str. 63/9]
gi|326410072|gb|ADZ67137.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis M28]
gi|326539788|gb|ADZ88003.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis M5-90]
Length = 231
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 68/217 (31%), Positives = 123/217 (56%), Gaps = 4/217 (1%)
Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
+FLQLR VLG++TGNEKP + S + +++L + + + +I+
Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGGPDNVVSLPRRANEKDYTAID 74
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY
Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
+ F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D +
Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 194
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
I DP+ ++ D+WTF R+ +PNW L++T+ +
Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231
>gi|256158573|ref|ZP_05456463.1| calcium-binding EF-hand [Brucella ceti M490/95/1]
gi|256253984|ref|ZP_05459520.1| calcium-binding EF-hand [Brucella ceti B1/94]
gi|261221124|ref|ZP_05935405.1| import inner membrane translocase subunit Tim44 [Brucella ceti
B1/94]
gi|265997084|ref|ZP_06109641.1| import inner membrane translocase subunit Tim44 [Brucella ceti
M490/95/1]
gi|260919708|gb|EEX86361.1| import inner membrane translocase subunit Tim44 [Brucella ceti
B1/94]
gi|262551552|gb|EEZ07542.1| import inner membrane translocase subunit Tim44 [Brucella ceti
M490/95/1]
Length = 231
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 68/217 (31%), Positives = 124/217 (57%), Gaps = 4/217 (1%)
Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
+FLQLR VLG++TGNEKP + S + + +++L + + + +I+
Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY
Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
+ F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D +
Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQIISSTLDRDGKV 194
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
I DP+ ++ D+WTF R+ +PNW L++T+ +
Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231
>gi|148559170|ref|YP_001259879.1| hypothetical protein BOV_1994 [Brucella ovis ATCC 25840]
gi|148370427|gb|ABQ60406.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
Length = 231
Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 68/217 (31%), Positives = 123/217 (56%), Gaps = 4/217 (1%)
Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
+FLQLR VLG++TGNEKP + S + + +++L + + + +I+
Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY
Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDRKVLKNLLSKDVY 134
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
+ F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS+ D+D +
Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSILDRDGKV 194
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
I DP+ ++ D+WTF R+ +PNW L++T+ +
Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231
>gi|255263169|ref|ZP_05342511.1| transporter, Tim44 family [Thalassiobium sp. R2A62]
gi|255105504|gb|EET48178.1| transporter, Tim44 family [Thalassiobium sp. R2A62]
Length = 219
Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 10/225 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M+S +L+ A I F+ L+LR VLG + G EKP + + R + G
Sbjct: 1 MNSPIIQLLVLAGIAIFLILRLRNVLGTREGFEKPPAQ----QSSAPDRALSDFEVIEGG 56
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
D D + P G + + V F+ +FL AR +YE I+ +F G++
Sbjct: 57 PDHDITDHV----PEGGDAYNALLGMKKVDPSFNVGEFLGGARGAYEMILMAFERGEIEE 112
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183
I+ + S VY+ F + RK+ ++++ VGI DM + A E T I +R VG+
Sbjct: 113 IKPFLSSDVYEAFATVVDDRKAKGVTIEANFVGISDMALNAADFNETTGEAEIAVRFVGE 172
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
S DK +I + D WTF R++ +PNW L++T
Sbjct: 173 MTSIVRDKGGDVIEGSETTVKRQKDTWTFARDMDADDPNWDLVAT 217
>gi|239833115|ref|ZP_04681444.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
intermedium LMG 3301]
gi|239825382|gb|EEQ96950.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
intermedium LMG 3301]
Length = 253
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 73/217 (33%), Positives = 125/217 (57%), Gaps = 4/217 (1%)
Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
+FLQLR VLG++TGNEKP + S + + +++L + + + +I+
Sbjct: 37 AVIIFLQLRNVLGRRTGNEKPPFDPYTSARSADAAPAGSETDNVVSLPRRTGEKDFTAID 96
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
+ P GT +N +R I + FDP F++ + +YE IV SF +G ++ L+ VY
Sbjct: 97 KAAPAGTPVNDGLRAIYAADPSFDPASFVDGVKIAYEMIVMSFADGDRKVLKNLLSKDVY 156
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
+ F ++ R++ ++V+SS VGID +I A ++ + ++T+ IV Q IS++YDKD L
Sbjct: 157 EGFVSAIDEREARGESVRSSFVGIDKAEITGAEMKGSEAHVTVNIVSQMISSTYDKDGKL 216
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
I DPE ++ D+WTF R+ +PNW L++T+ +
Sbjct: 217 IDGDPENVLEIKDLWTFARDTRSRDPNWKLVATEAED 253
>gi|256112399|ref|ZP_05453320.1| transporter [Brucella melitensis bv. 3 str. Ether]
gi|265993836|ref|ZP_06106393.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis bv. 3 str. Ether]
gi|262764817|gb|EEZ10738.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis bv. 3 str. Ether]
Length = 231
Score = 182 bits (460), Expect = 4e-44, Method: Composition-based stats.
Identities = 68/217 (31%), Positives = 123/217 (56%), Gaps = 4/217 (1%)
Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
+FLQLR VLG++TGNEKP + S + +++L + + + +I+
Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGGPDNVVSLPRRANEKDYTAID 74
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY
Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
+ F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D +
Sbjct: 135 EGFVAAIDEREKQGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 194
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
I DP+ ++ D+WTF R+ +PNW L++T+ +
Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231
>gi|297247302|ref|ZP_06931020.1| hypothetical protein BAYG_00201 [Brucella abortus bv. 5 str. B3196]
gi|297174471|gb|EFH33818.1| hypothetical protein BAYG_00201 [Brucella abortus bv. 5 str. B3196]
Length = 235
Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 68/217 (31%), Positives = 124/217 (57%), Gaps = 4/217 (1%)
Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
+FLQLR VLG++TGNEKP + S + + +++L + + + +I+
Sbjct: 19 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 78
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY
Sbjct: 79 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 138
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
+ F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D +
Sbjct: 139 EGFVAAIDEREKWGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 198
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
I DP+ ++ D+WTF R+ +PNW L++T+ +
Sbjct: 199 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 235
>gi|254780815|ref|YP_003065228.1| hypothetical protein CLIBASIA_03530 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040492|gb|ACT57288.1| hypothetical protein CLIBASIA_03530 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 232
Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 232/232 (100%), Positives = 232/232 (100%)
Query: 1 MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60
MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII
Sbjct: 1 MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60
Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE
Sbjct: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI
Sbjct: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE
Sbjct: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
>gi|256258462|ref|ZP_05463998.1| calcium-binding EF-hand [Brucella abortus bv. 9 str. C68]
gi|260884773|ref|ZP_05896387.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 9 str. C68]
gi|260874301|gb|EEX81370.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 9 str. C68]
Length = 231
Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 68/217 (31%), Positives = 124/217 (57%), Gaps = 4/217 (1%)
Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
+FLQLR VLG++TGNEKP + S + + +++L + + + +I+
Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY
Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
+ F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D +
Sbjct: 135 EGFVAAIDEREKWGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 194
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
I DP+ ++ D+WTF R+ +PNW L++T+ +
Sbjct: 195 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 231
>gi|307943366|ref|ZP_07658710.1| import inner membrane translocase subunit Tim44 [Roseibium sp.
TrichSKD4]
gi|307772996|gb|EFO32213.1| import inner membrane translocase subunit Tim44 [Roseibium sp.
TrichSKD4]
Length = 244
Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats.
Identities = 73/239 (30%), Positives = 132/239 (55%), Gaps = 16/239 (6%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKY------VFSKRDERGIITLG 63
D ++F + F+ +L+ VLGK+TGNE+P +S + K +I +
Sbjct: 6 DVYNIIFLGLAVFILFRLKSVLGKRTGNERPPFDPYSKQDDAGQSSQGGKSQSDNVIPMP 65
Query: 64 KG----------KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
+++ I++L P GT LN+ ++ I+SV F+P++F+ A +YE
Sbjct: 66 GQESYQETGIREPEENGEVVIDKLAPQGTALNEALKQILSVDRTFEPREFIEGASAAYEM 125
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
IV +F EG +++L+ V+ F ++ R+ ++ ++S+ VGID +I+ A++++ T
Sbjct: 126 IVTAFAEGDRKTLKQLLSKDVFDGFIMAIDEREKRDEVIESTFVGIDKAEIVEAALKDGT 185
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+T+++ Q ISA+ DKD ++ DP +VIDIWTF R+ +PNW L++T+ E
Sbjct: 186 AQVTVKVQSQLISATCDKDGEVVDGDPNKVSEVIDIWTFARDTGSRDPNWKLVATESAE 244
>gi|254460692|ref|ZP_05074108.1| import inner membrane translocase, subunit Tim44 [Rhodobacterales
bacterium HTCC2083]
gi|206677281|gb|EDZ41768.1| import inner membrane translocase, subunit Tim44 [Rhodobacteraceae
bacterium HTCC2083]
Length = 217
Score = 181 bits (458), Expect = 7e-44, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 12/225 (5%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M+S +L+ A I F+ L+L+ VLG + G E+P + V S R + G
Sbjct: 1 MNSPIIQLLVLAGIAVFLILRLKNVLGTREGFEQPPAQ------VPSGRKRPEFEVIEGG 54
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
D D + + + + + + F DFL AR +YE I+ F G++
Sbjct: 55 PDPDIADHTDGMP----EAAEALAKMKAAEPSFGVSDFLGGARGAYEMILIGFERGEMAD 110
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN--TVYITIRIVGQ 183
I+ +D VY F + + R V++ VGI +M + +A+ ++ ++++ +G+
Sbjct: 111 IKPFLDDDVYASFAEVVEMRAKQGLTVEAEFVGIREMSLADATFDDENGIGEVSVKFIGE 170
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
S D ++ D + + DIWTF R + +PNW L++T
Sbjct: 171 MTSVVRDNAGEIVEGDAKKVKRQKDIWTFARKMGSDDPNWQLVAT 215
>gi|83594937|ref|YP_428689.1| hypothetical protein Rru_A3608 [Rhodospirillum rubrum ATCC 11170]
gi|83577851|gb|ABC24402.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
Length = 219
Score = 181 bits (458), Expect = 7e-44, Method: Composition-based stats.
Identities = 58/229 (25%), Positives = 114/229 (49%), Gaps = 11/229 (4%)
Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
+ I+ FA I F+ L+LR VLG++TG E+ F + + +I L
Sbjct: 1 MNEGFQYIDIIFFAMIAAFLVLRLRSVLGRRTGEEQRRPDPF----AQPESAQDNVIDLS 56
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
K P L + I F P+ FL A+ ++E I+ ++ +G
Sbjct: 57 GRKAVAGR-------PGDGTLAGGLTQIQLTDPSFSPEGFLIGAKAAFEMILMAYAKGDK 109
Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
++ L+ V+Q+F+ ++ R+ ++ +++ LVG ++I+ A ++ +T++ V +
Sbjct: 110 AVLKPLLAGEVFQNFSRAIDEREQADETMETDLVGFKSVEILRAGMDGQDALVTVKFVTE 169
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+++ DK + ++ +P +V DIWTF R+ ++PNW LI+T++ E
Sbjct: 170 QVNSVRDKSDTVVDGNPNQVEEVTDIWTFRRDTVSNDPNWDLIATQVPE 218
>gi|114762187|ref|ZP_01441655.1| transporter, Tim44 family protein [Pelagibaca bermudensis HTCC2601]
gi|114545211|gb|EAU48214.1| transporter, Tim44 family protein [Roseovarius sp. HTCC2601]
Length = 219
Score = 181 bits (458), Expect = 7e-44, Method: Composition-based stats.
Identities = 55/227 (24%), Positives = 108/227 (47%), Gaps = 10/227 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M++ +L+ A I F+ L+LR VLG + G EKP S S + + R + G
Sbjct: 1 MNTPIVQLLVLAGIAIFLILRLRSVLGTRDGFEKPESPSPSRRDDTA----RDFEVIEGG 56
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
D +D + P + + + + F +FL+ AR +YE I+ F G++
Sbjct: 57 PDHDIIDHV----PENSPAAEALAKMKRAEPSFGVGEFLSGARGAYEMILMGFDNGEIED 112
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQ 183
++ + +Y+ F+D + R +++ VG+ ++ +++A+ ++ IT++ VG+
Sbjct: 113 LKPFLSDEIYETFSDVIEQRAQQGLTIEAQFVGVRELSLVDATFDDTERLAEITVKYVGE 172
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
S + +I P + D+WT+ R + +PNW L++T
Sbjct: 173 LTSVVKNAAGEVIEGSPTAVKRQKDVWTYARRMGSDDPNWQLVATDE 219
>gi|294851303|ref|ZP_06791976.1| hypothetical protein BAZG_00203 [Brucella sp. NVSL 07-0026]
gi|294819892|gb|EFG36891.1| hypothetical protein BAZG_00203 [Brucella sp. NVSL 07-0026]
Length = 235
Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats.
Identities = 68/217 (31%), Positives = 123/217 (56%), Gaps = 4/217 (1%)
Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
+FLQLR VLG +TGNEKP + S + + +++L + + + +I+
Sbjct: 19 AVIIFLQLRNVLGCRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 78
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY
Sbjct: 79 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 138
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
+ F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D +
Sbjct: 139 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 198
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
I DP+ ++ D+WTF R+ +PNW L++T+ +
Sbjct: 199 IDGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 235
>gi|182680015|ref|YP_001834161.1| import inner membrane translocase subunit Tim44 [Beijerinckia
indica subsp. indica ATCC 9039]
gi|182635898|gb|ACB96672.1| import inner membrane translocase subunit Tim44 [Beijerinckia
indica subsp. indica ATCC 9039]
Length = 260
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 64/242 (26%), Positives = 102/242 (42%), Gaps = 20/242 (8%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGK--------------------Y 49
D I++FA + F+ +LR VLG + GNE+P G+
Sbjct: 8 DMSIVIFALLAAFLIWKLRSVLGTRQGNEEPRDNSVPGQWPSLFSPKSQDPSQANKNGAP 67
Query: 50 VFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN 109
R G + + + + + I F P FL AR+
Sbjct: 68 GQPTFPNRPSPAGASGAPAEAGRNWSAFVEPNSPAAAGLEAIAKADPAFAPGPFLEGARH 127
Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
+YE IV++F EG+ A+ L+ VY F +++ R+S V+ + V +D KI A++
Sbjct: 128 AYEMIVNAFAEGQRSALANLLVRDVYAGFEAAITERESQGHKVELTFVSLDAAKIEEAAL 187
Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
IT+R + I + D ++ P+ V D+WTF R I +PNW L +TK
Sbjct: 188 FHQIAEITLRYKAKMIKVTRDAQGAVVEGSPDHVVDVDDLWTFERMIGSQDPNWKLAATK 247
Query: 230 LG 231
G
Sbjct: 248 TG 249
>gi|62290918|ref|YP_222711.1| hypothetical protein BruAb1_2049 [Brucella abortus bv. 1 str.
9-941]
gi|62197050|gb|AAX75350.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
Length = 231
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 68/217 (31%), Positives = 124/217 (57%), Gaps = 4/217 (1%)
Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
+FLQLR VLG++TGNEKP + S + + +++L + + + +I+
Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY
Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
+ F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D +
Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKV 194
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
I DP+ ++ D+WTF R+ +PNW L++T+ +
Sbjct: 195 IDGDPDNMVEIKDLWTFARDTNSRDPNWKLVATEAED 231
>gi|260429391|ref|ZP_05783368.1| transporter, Tim44 family [Citreicella sp. SE45]
gi|260420014|gb|EEX13267.1| transporter, Tim44 family [Citreicella sp. SE45]
Length = 219
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 56/227 (24%), Positives = 111/227 (48%), Gaps = 10/227 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M++ +L+ A I F+ L+LR VLG + G EKP + + + +R + G
Sbjct: 1 MNTPIVQLLVLAGIAIFLILRLRSVLGTRDGFEKPEAPAPAKRDDR----KRDFEVIEGG 56
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
D D + P + + + + + F+ +FL+ AR +YE I+ F G++
Sbjct: 57 PDHDITDHV----PENSPAAEALAKMKRIEPSFNVTEFLSGARGAYEMILMGFDNGEIED 112
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQ 183
++ + +Y+ F+D + R V++ VG+ ++ +++AS +E IT++ VG+
Sbjct: 113 LKPFLSDEIYETFSDVIEQRGQQGLTVEAEFVGVRELSLVDASFDETRQLAEITVKYVGE 172
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
S + ++ +P + D+WT+ RN+ +PNW L++T
Sbjct: 173 LTSVVKNAAGEIVEGNPRTVKRQKDVWTYARNMGTDDPNWQLVATDE 219
>gi|17988336|ref|NP_540970.1| transporter [Brucella melitensis bv. 1 str. 16M]
gi|17984111|gb|AAL53234.1| transporter [Brucella melitensis bv. 1 str. 16M]
Length = 216
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 68/216 (31%), Positives = 123/216 (56%), Gaps = 4/216 (1%)
Query: 21 FFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSINE 76
+FLQLR VLG++TGNEKP + S + +++L + + + +I++
Sbjct: 1 MIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGGPDNVVSLPRRANEKDYTAIDK 60
Query: 77 LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136
+ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY+
Sbjct: 61 IAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVYE 120
Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196
F ++ R+ + V+SS VGID I A ++ + ++T+ IV Q IS++ D+D +I
Sbjct: 121 GFVAAIDEREKRGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKVI 180
Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
DP+ ++ D+WTF R+ +PNW L++T+ +
Sbjct: 181 DGDPDNVVEIKDLWTFARDTNSRDPNWKLVATEAED 216
>gi|126734398|ref|ZP_01750145.1| import inner membrane translocase, subunit Tim44 [Roseobacter sp.
CCS2]
gi|126717264|gb|EBA14128.1| import inner membrane translocase, subunit Tim44 [Roseobacter sp.
CCS2]
Length = 220
Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 9/225 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M+S +L+ A I F+ L+LRGVLG + G EKP K D + G
Sbjct: 1 MNSPLIQLLVLAGIAVFLILRLRGVLGTREGFEKPAVTRPEPSSRVGKPD---FDVIEGG 57
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
D D I G+ K + D+ F+ +FL AR +YE I+ +F G + +
Sbjct: 58 PDLDITDHI----EEGSDSAKALADMKRADPSFNVSEFLGGARGAYEMILMAFENGDLDS 113
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183
I + VY+ F + R+ V + +GI DM + A ++ +++R +
Sbjct: 114 IVPFISEDVYEAFASVVDERQRQGLTVDAKFIGISDMTLTEAVFDDFSKEGEVSVRFKSE 173
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
S D +I + D WTF R + +PNW L++T
Sbjct: 174 MTSVVRDNAGDIIEGSETEIKRQKDTWTFARKMDADDPNWRLVAT 218
>gi|149912880|ref|ZP_01901414.1| transporter, Tim44 family protein [Roseobacter sp. AzwK-3b]
gi|149813286|gb|EDM73112.1| transporter, Tim44 family protein [Roseobacter sp. AzwK-3b]
Length = 219
Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 58/224 (25%), Positives = 109/224 (48%), Gaps = 8/224 (3%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M+S +L+ A I F+ L+L+ VLG + G E P S + + + + G
Sbjct: 1 MNSPLLQLLVLAGIAIFLILRLKSVLGTRDGFEGPPR---SERAGATPQRRDTFEVIEGG 57
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
D +D++++ G+ + + + F+ FL AR +YE I+ +F G++
Sbjct: 58 PDYDIIDNVSD----GSDAADALARMKRIEPSFNVTQFLQGARGAYEMILMAFERGQLED 113
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYITIRIVGQF 184
+ +D VY+ F + R+ V++ +G+ + K+ A+ ++N IT+R VG+
Sbjct: 114 VAPFLDEDVYEAFAQVIDARQEQGLIVEAEFLGLRETKLAEATLSDDNRAAITVRFVGEL 173
Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
S D + ++ D + + DIWTF R + +PNW L++T
Sbjct: 174 TSIVRDANGEIVEGDAKTAKRQKDIWTFERVMGSDDPNWRLVAT 217
>gi|254500164|ref|ZP_05112315.1| Tim44-like domain family [Labrenzia alexandrii DFL-11]
gi|222436235|gb|EEE42914.1| Tim44-like domain family [Labrenzia alexandrii DFL-11]
Length = 245
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 69/230 (30%), Positives = 124/230 (53%), Gaps = 17/230 (7%)
Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG---------------- 63
F+ +LR VLGK+TG E+P +S + + +
Sbjct: 16 AVFILFRLRSVLGKRTGEERPPFDPYSKPEQQNGQANGQDNVIPLPHQGQQSPEGYDDMA 75
Query: 64 -KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
+++D I+++ P G+ LN ++ I+SV F+P+ F+ A+ +YE IV +F +G
Sbjct: 76 PARQEEDGEVVIDKVAPAGSALNNALKQILSVDRSFEPEPFIQGAKAAYEMIVMAFADGD 135
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
A++ L+ V++ F+ ++ R+ + ++S+ VGID +I+ A++++ T +T+RI
Sbjct: 136 KKALKNLLSRDVFEGFSAAIDDREKRGETIESTFVGIDKAEIVEAALKDTTAQVTVRIHS 195
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
Q ISA+ DK ++ DP +VIDIWTF R+ +PNW L++T+ E
Sbjct: 196 QLISATRDKGGEVVDGDPAKVTEVIDIWTFARDTATRDPNWKLVATESAE 245
>gi|163745120|ref|ZP_02152480.1| hypothetical protein OIHEL45_06015 [Oceanibulbus indolifex HEL-45]
gi|161381938|gb|EDQ06347.1| hypothetical protein OIHEL45_06015 [Oceanibulbus indolifex HEL-45]
Length = 219
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 10/226 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M+S +L+ A I F+ L+L+ VLG + G EKP S R + G
Sbjct: 1 MNSPLIQLLVLAGIAVFLILRLKNVLGTREGFEKPPVS----DQTPSARSGPSFEVIEGG 56
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
D D + P + K + ++ V F DFL AR +YE IV + G +
Sbjct: 57 PDLDITDHV----PEDSTSGKALAEMKRVEPSFGVNDFLQGARGAYEMIVMGYERGDLAE 112
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183
I+ + VY+ F D ++ R+ ++++ +G+ ++++I+A ++E T +TIR VG+
Sbjct: 113 IQPFLAEDVYESFVDGVAAREDQGLTIEANFIGVRELELIDARMDEATKEAELTIRFVGE 172
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
SA +++ ++ + D W F R + +PNW+L+ST
Sbjct: 173 LTSAVRNREGEIVEGSINEIKRQKDTWVFARVMGSDDPNWLLVSTD 218
>gi|126738514|ref|ZP_01754219.1| transporter, Tim44 family protein [Roseobacter sp. SK209-2-6]
gi|126720313|gb|EBA17019.1| transporter, Tim44 family protein [Roseobacter sp. SK209-2-6]
Length = 241
Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 55/226 (24%), Positives = 106/226 (46%), Gaps = 11/226 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M+S +L+ A I F+ L+L+ VLG + G EKP + + + + G
Sbjct: 24 MESPLIQLLVLAGIAVFLILRLKSVLGTREGFEKPPVSAAEKR-----QGRPDLEVIEGG 78
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
+D D + E P + + F +F+ AR +YE I+ F G++ A
Sbjct: 79 PDRDITDHVEEESP----AAQAFASMKRAEPSFSVSEFVQGARGAYEMILMGFENGELDA 134
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQ 183
++ + VY F ++++ R+ +++ +G+ + ++ A + NT +T+R VG+
Sbjct: 135 LKGFLAEDVYDSFVEAVADREDKGLTIEAEFIGVRETAVVGAHFDDANNTAEVTMRFVGE 194
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
S D+D ++ D + + D W F R++ +PNW L++T
Sbjct: 195 LTSVVRDRDGEIVEGDAKAVKRQKDTWVFARSMGTDDPNWQLVATD 240
>gi|149204297|ref|ZP_01881264.1| transporter, Tim44 family protein [Roseovarius sp. TM1035]
gi|149142182|gb|EDM30229.1| transporter, Tim44 family protein [Roseovarius sp. TM1035]
Length = 219
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 10/225 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M+S +L+ A I F+ L+L+ VLG + G E P R R + G
Sbjct: 1 MNSPILQLLVLAGIAIFLILRLKSVLGTRDGFEGPTRSA----PAPETRRRREFEVIEGG 56
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
D +D + P + + ++ + DF FL AR +YE I+ +F GK+
Sbjct: 57 PDHDIVDHV----PEDSDAAAALAEMKRIEPDFSVTTFLQGARGAYEMILMAFERGKLDE 112
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183
+ +D VY+ F + R+ +++ +G+ ++ + +A + +T I++R VG+
Sbjct: 113 VTPFLDRDVYETFAQVVDAREQQGLTIEAEFIGVRELTLADARFDADTRRAEISVRYVGE 172
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
IS D ++ P + D+WT+ R + +PNW L++T
Sbjct: 173 LISVVRDSTGEIVEGVPGQSKRQKDVWTYERVMGADDPNWRLVAT 217
>gi|170750111|ref|YP_001756371.1| import inner membrane translocase subunit Tim44 [Methylobacterium
radiotolerans JCM 2831]
gi|170656633|gb|ACB25688.1| import inner membrane translocase subunit Tim44 [Methylobacterium
radiotolerans JCM 2831]
Length = 237
Score = 177 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 55/234 (23%), Positives = 108/234 (46%), Gaps = 9/234 (3%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
DS D ++F + FV +LR VLG+KTG E+ + G +
Sbjct: 3 DSFDVTTIIFLALAVFVIWRLRSVLGQKTGAERSPFKPVDRSRTEPQARSDGDNVVRLPG 62
Query: 67 KKDNL---------DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117
+ G+ + + + + FDP+ F+ A+++YEAI+ +
Sbjct: 63 ADRVQAAPPPAAAPRDWRGIAEPGSEVARGLEACIQAEPSFDPRAFIEGAKSAYEAIMIA 122
Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
F +G + L+ V + F +++ R+ N + ++++ V ID +I+ + ++T
Sbjct: 123 FAKGDRKTLRGLLSKEVGEAFERAIAERERNRQTLETTFVSIDKAEIVAVEVRNRVAHVT 182
Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+R + I+A+ + D ++ E +V D+WTF R + +PNW L++T+ G
Sbjct: 183 VRFLSNLITATRNADGKVVDGSAETVVEVPDVWTFARTLGSRDPNWQLVATEAG 236
>gi|254463881|ref|ZP_05077292.1| transporter, Tim44 family [Rhodobacterales bacterium Y4I]
gi|206684789|gb|EDZ45271.1| transporter, Tim44 family [Rhodobacterales bacterium Y4I]
Length = 214
Score = 177 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 11/223 (4%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
+L+ A I F+ L+LR VLG + G EKP + + + G +D
Sbjct: 1 MIQLLVLAGIAVFLILRLRSVLGTREGFEKPPLPQSEARGR-----RPDLEVIEGGPDRD 55
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
D + E G++ + + + F ++F+ AR +YE I+ F G + I+
Sbjct: 56 ITDYVAE----GSKQAQALAAMKRAEPSFQVQEFVQGARGAYEMILMGFEHGNLDDIQPF 111
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQFISA 187
+ V+ F D+++ R+ +++ +G+ + + +A + T IT+R VG+ S
Sbjct: 112 LAEDVFDSFVDAVAQREDKGYKIEADFIGVRETTLQDAQFDPQTGRAEITMRFVGELTSV 171
Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
D+ ++ DP+ + D W F RN+ +PNW L++T
Sbjct: 172 VRDRGGDIVEGDPKAIKRQKDTWIFARNMGSDDPNWQLVATDA 214
>gi|153008182|ref|YP_001369397.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
anthropi ATCC 49188]
gi|151560070|gb|ABS13568.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
anthropi ATCC 49188]
Length = 231
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 71/217 (32%), Positives = 125/217 (57%), Gaps = 4/217 (1%)
Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
+FLQLR VLG++TG+EKP + S + + +++L + + + +I+
Sbjct: 15 AVIIFLQLRNVLGRRTGSEKPPFDPYTSARSADAAPASGETDNVVSLPRRPGEKDFTAID 74
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
+ P+GT +N MR I + FDP F+ + +YE IV SF +G ++ L+ V+
Sbjct: 75 KAAPVGTPVNDGMRAIYAADPSFDPAGFVEGVKIAYEMIVMSFADGDRKVLKNLLSKDVF 134
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
+ F ++ R++ ++V+SS VGID +I A ++ + ++T+ IV Q IS+++DKD L
Sbjct: 135 EGFVSAIDDRETRGESVRSSFVGIDKAEIAGAEMKGSEAHVTVNIVSQMISSTFDKDGKL 194
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
I DPE ++ D+WTF R+ +PNW L++T+ +
Sbjct: 195 IDGDPENVLEIKDLWTFARDTRSRDPNWKLVATEAED 231
>gi|163850987|ref|YP_001639030.1| import inner membrane translocase subunit Tim44 [Methylobacterium
extorquens PA1]
gi|218529814|ref|YP_002420630.1| import inner membrane translocase subunit Tim44 [Methylobacterium
chloromethanicum CM4]
gi|240138118|ref|YP_002962590.1| hypothetical protein MexAM1_META1p1451 [Methylobacterium extorquens
AM1]
gi|254560680|ref|YP_003067775.1| hypothetical protein METDI2225 [Methylobacterium extorquens DM4]
gi|163662592|gb|ABY29959.1| import inner membrane translocase subunit Tim44 [Methylobacterium
extorquens PA1]
gi|218522117|gb|ACK82702.1| import inner membrane translocase subunit Tim44 [Methylobacterium
chloromethanicum CM4]
gi|240008087|gb|ACS39313.1| conserved hypothetical protein, putative membrane protein
[Methylobacterium extorquens AM1]
gi|254267958|emb|CAX23826.1| conserved hypothetical protein, putative membrane protein
[Methylobacterium extorquens DM4]
Length = 239
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 59/236 (25%), Positives = 105/236 (44%), Gaps = 11/236 (4%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
DS D L+F + FV +LR VLG+KTG E+ + +
Sbjct: 3 DSFDATTLIFLALAVFVIWRLRSVLGQKTGTERSPFRPVERNRTEPPAGRGEGDNVVRLP 62
Query: 67 KKDNLD-----------SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115
D + G+ + + + +V + F+P+ FL A+ +YE IV
Sbjct: 63 GADRSPAGAAAVQTAARDWRGIAEPGSAVARGLEQVVQLEPAFEPRAFLEGAKGAYETIV 122
Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY 175
+F +G + L+ V + F ++S R+ + +++ + ID +I ++
Sbjct: 123 TAFAKGDRKTLRALLSREVCEGFERAISEREKRNETAETTFISIDKAEIAAVEVKNRAAQ 182
Query: 176 ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
IT+R + I+A+ D D +I + E +V D+WTF R + +PNW L++T G
Sbjct: 183 ITVRFLSNLITATRDADGKVIDGNAETGVEVPDVWTFARTLGSRDPNWQLVATDAG 238
>gi|159184122|ref|NP_353048.2| hypothetical protein Atu0008 [Agrobacterium tumefaciens str. C58]
gi|159139459|gb|AAK85833.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 217
Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 82/217 (37%), Positives = 123/217 (56%), Gaps = 5/217 (2%)
Query: 21 FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL-----GKGKKKDNLDSIN 75
+F QLR VLG++TGNEKP +S + V + G+ ++ + +
Sbjct: 1 MLIFFQLRSVLGRRTGNEKPPFDPYSPRDVAKGPVADDNKVVTLPKRGEAEEDNRFAEAD 60
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
L P T LN +RD+++ F PK+FLN AR +YE IV F +G ++ L+ V+
Sbjct: 61 ALAPADTPLNASLRDVMTKDPSFRPKEFLNGARMAYEMIVMGFADGDRKTLKNLLSKEVF 120
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
F ++S R+S + VKS+ VGI+ I A + ++ V +T+RIV Q ISA+YDKD L
Sbjct: 121 DGFEAAISERESRGEVVKSTFVGIEKADITQAGVRDSEVQVTLRIVSQLISATYDKDGKL 180
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ DPE +V DIWTF R+I +PNW LI+T+ +
Sbjct: 181 VDGDPEAVAEVDDIWTFSRDIRSRDPNWKLIATESEQ 217
>gi|188580934|ref|YP_001924379.1| import inner membrane translocase subunit Tim44 [Methylobacterium
populi BJ001]
gi|179344432|gb|ACB79844.1| import inner membrane translocase subunit Tim44 [Methylobacterium
populi BJ001]
Length = 242
Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 14/239 (5%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
DS D L+F + FV +LR VLG+KTG E+ + +
Sbjct: 3 DSFDATTLIFLALAVFVIWRLRSVLGQKTGTERSPFRPVERNRTEPPAGRGEGDNVVRLP 62
Query: 67 KKD--------------NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
D + + + + + +V V FDP+ FL A+ +YE
Sbjct: 63 GADRAQAGAQAGTATQTATRDWRGIAEPNSAVARGLEQVVQVEPGFDPRAFLEGAKGAYE 122
Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
IV +F +G + L+ V + F ++S R+ + +++ + ID +I ++
Sbjct: 123 TIVTAFAKGDRKTLRALLSREVCEGFERAISEREKRRETAETTFISIDKAEIAAVEVKNR 182
Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
IT+R + I+A+ D D +I + E +V D+WTF R + +PNW L++T G
Sbjct: 183 AAQITVRFLSNLITATRDADGKVIDGNAETGVEVPDVWTFARTLGSRDPNWQLVATDAG 241
>gi|85705737|ref|ZP_01036834.1| transporter, Tim44 family protein [Roseovarius sp. 217]
gi|85669727|gb|EAQ24591.1| transporter, Tim44 family protein [Roseovarius sp. 217]
Length = 219
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 59/225 (26%), Positives = 105/225 (46%), Gaps = 10/225 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M+S +L+ A I F+ L+L+ VLG + G E P R + G
Sbjct: 1 MNSPILQLLVLAGIAIFLILRLKSVLGTRDGFEGPARNA----PTPETSRRREFEVIEGG 56
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
D +D + P + + D+ + DF FL AR +YE I+ +F GK+
Sbjct: 57 PDHDIVDHV----PEDSEAAGALADMKRIEPDFSVTTFLQGARGAYEMILMAFERGKLDE 112
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183
I +D VY+ F + +R+ ++++ +G+ ++ + +A + T IT+R VG+
Sbjct: 113 ITPFLDREVYETFAQVVDSREQQGLSIEAEFIGVRELSLFDAKFDAATRRAEITVRYVGE 172
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+S D + ++ P + DIWT+ R + +PNW L++T
Sbjct: 173 LVSVVRDSNGEIVEGAPGQSKRQKDIWTYERIMGSDDPNWRLVAT 217
>gi|254512041|ref|ZP_05124108.1| transporter, Tim44 family [Rhodobacteraceae bacterium KLH11]
gi|221535752|gb|EEE38740.1| transporter, Tim44 family [Rhodobacteraceae bacterium KLH11]
Length = 219
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 55/227 (24%), Positives = 104/227 (45%), Gaps = 10/227 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M+S +L+ A I F+ L+L+ VLG + G EKP + + R + G
Sbjct: 1 MNSPLIQLLVLAGIAIFLILRLKSVLGTREGFEKPP----LQQQRDTNDARRDFEVIEGG 56
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
D D + E + + + + V F +F+ AR +YE IV F +G +
Sbjct: 57 PDHDITDHVAE----DSEQAETLTAMKRVEPSFSVSEFVQGARGAYEMIVMGFEKGNLDE 112
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183
I+ + V+ F ++ R+ +++ +G+ + + + +++T IT+R +G+
Sbjct: 113 IQPFLSEEVFDTFVSVVADREDKGLTIEAEFIGVRETTLADVKFDKDTNQAEITMRFIGE 172
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
S D+ +I +P + D WTF R + +PNW+L++T
Sbjct: 173 LTSVVRDRGGDIIEGNPNTVKRQKDSWTFARVMGLDDPNWLLVATDA 219
>gi|83950785|ref|ZP_00959518.1| transporter, Tim44 family protein [Roseovarius nubinhibens ISM]
gi|83838684|gb|EAP77980.1| transporter, Tim44 family protein [Roseovarius nubinhibens ISM]
Length = 214
Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats.
Identities = 56/221 (25%), Positives = 104/221 (47%), Gaps = 11/221 (4%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
+L+ A I F+ L+LR VLG + G E P S + + +G + G D
Sbjct: 1 MLQLLVLAGIAIFLLLRLRSVLGTRDGFEPPRS-----ELPGAPDRRQGFEVIEGGPDLD 55
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
D + P + + ++ + F +FL+ +R +YE I+ SF GK+ I
Sbjct: 56 ITDHV----PEDSDAAAALAEMKRIEPSFSVSEFLSGSRQAYEWILMSFENGKLDEIVPF 111
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQFISA 187
+ V++ F + R+ V++ G+ D+ +I+A++++ T IT++ +G+ S
Sbjct: 112 LSPDVHEAFAQVIDARQEKNLTVEAEFYGVRDVTLIDAALDDTTKAAEITVKFLGELSSV 171
Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
++ +I P + D WTF R + +PNW L++T
Sbjct: 172 VRNEQGEIIEGTPGEPKRQKDTWTFERVMGSDDPNWRLVAT 212
>gi|254440619|ref|ZP_05054113.1| Tim44-like domain family [Octadecabacter antarcticus 307]
gi|198256065|gb|EDY80379.1| Tim44-like domain family [Octadecabacter antarcticus 307]
Length = 219
Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats.
Identities = 63/225 (28%), Positives = 109/225 (48%), Gaps = 10/225 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M+S +L+ A I F+ L+LR VLG + G EKP + S+R + + G
Sbjct: 1 MNSPVLQLLVLAGIAIFLILRLRNVLGTREGFEKPKVAPA----IPSRRPTPDLEVIEGG 56
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
D D ++ + + +V+ + + F+ ++FL AR +YE I+ F +G +
Sbjct: 57 PDPDVTDYVD----ADSDVARVLTAMKTADRSFNVREFLRGARGAYEMILTGFEKGDIAE 112
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183
I+ + S VY F + R+ + +V +GI + +++A +E T I+I+ + +
Sbjct: 113 IKPFLSSDVYDAFAGVVEAREKDGLSVDFKFIGISETTLVDAEFDETTKNAEISIKFLCE 172
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
SA YDK L K D+WTF R + +PNW L++T
Sbjct: 173 STSAVYDKGGDLKEGSATDIKKQRDVWTFGRTMGTGDPNWFLVAT 217
>gi|254450565|ref|ZP_05064002.1| transporter, Tim44 family [Octadecabacter antarcticus 238]
gi|198264971|gb|EDY89241.1| transporter, Tim44 family [Octadecabacter antarcticus 238]
Length = 224
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 10/230 (4%)
Query: 1 MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60
M M+S +L+ A I F+ L+LR VLG + G EKP + + ++R +
Sbjct: 1 MKETHMNSPVLQLLVLAGIAIFLILRLRNVLGTREGFEKPKAPPA----IPTRRFGPDLE 56
Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
+ G D D ++ + + K + + + F+ ++FL AR +YE I+ F +
Sbjct: 57 VIEGGPDPDVTDYVD----ADSDMAKALTAMKTADRSFNVREFLRGARGAYEMILTGFEK 112
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITI 178
G + I+ + S VY F + +R+ + ++ +GI + +++A +E T ITI
Sbjct: 113 GDLAEIKPFLSSDVYDAFAGVVESREKDGLSIDFKFIGISETTLVDAEFDETTKNAEITI 172
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ + + SA YD L P K D+WTF R + +PNW L++T
Sbjct: 173 KFLNESTSAVYDNGGDLKEGSPTEIKKQRDVWTFGRTMGTGDPNWFLVAT 222
>gi|84684638|ref|ZP_01012539.1| hypothetical protein 1099457000260_RB2654_13474 [Maritimibacter
alkaliphilus HTCC2654]
gi|84667617|gb|EAQ14086.1| hypothetical protein RB2654_13474 [Rhodobacterales bacterium
HTCC2654]
Length = 219
Score = 175 bits (442), Expect = 5e-42, Method: Composition-based stats.
Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 10/225 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M S +++ A I F+ L+LR VLG + G EKP + V + + G
Sbjct: 1 MSSPIIQLIVLAAIAIFLILRLRDVLGTREGFEKPVVSRTESQRVD---NRGKFEVIEGG 57
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
D D + + I + + + F DFLN AR +YE I+ +F G++
Sbjct: 58 PDTDITDHVEDPASI-----EALAKMKGAERSFAVGDFLNGARGAYEMILMAFEAGELDK 112
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183
I+ + VY+ F + R+ + + ++ VG+ +MK++ A ++ ITIR +G+
Sbjct: 113 IKPFLSDEVYESFATVVEQREKDGYKIDANFVGLREMKLVEAEFDDESREGEITIRFIGE 172
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
S DK ++ +P + D+WTF R + NPNW L++T
Sbjct: 173 ITSVVRDKSGEIVEGNPTEVKRQKDVWTFARIMGSENPNWQLVAT 217
>gi|163738003|ref|ZP_02145419.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis BS107]
gi|163742601|ref|ZP_02149987.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis 2.10]
gi|161384186|gb|EDQ08569.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis 2.10]
gi|161388619|gb|EDQ12972.1| transporter, Tim44 family protein [Phaeobacter gallaeciensis BS107]
Length = 218
Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 55/227 (24%), Positives = 105/227 (46%), Gaps = 11/227 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M+S +L+ A I F+ L+L+ VLG + G EKP + + + G
Sbjct: 1 MESPVIQLLVLAGIAVFLILRLKSVLGTREGFEKPAVPQADRQ-----NRRPELEVIEGG 55
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
D +D + E P + + + F+ +DF+ AR +YE I+ +F G++
Sbjct: 56 PDHDIVDYVPEDSPQASD----LAAMKKAEPSFEVRDFVQGARGAYEMILMAFERGELDD 111
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQ 183
IE + V+ F +++ R+ +++ +G+ + + + S + T IT+R V +
Sbjct: 112 IEAFLAPDVFDSFVTAVAHREDQGLTIEAEFIGVRETTLTDTSFDPATGDAQITMRFVAE 171
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
S D+ ++ DP+ + D W F R + ++PNW L++T
Sbjct: 172 LTSVVRDRGGDIVEGDPKAVKRQKDTWVFGRTMGSADPNWHLVATDA 218
>gi|304392739|ref|ZP_07374679.1| import inner membrane translocase, subunit Tim44 [Ahrensia sp.
R2A130]
gi|303295369|gb|EFL89729.1| import inner membrane translocase, subunit Tim44 [Ahrensia sp.
R2A130]
Length = 230
Score = 174 bits (440), Expect = 9e-42, Method: Composition-based stats.
Identities = 66/229 (28%), Positives = 100/229 (43%), Gaps = 8/229 (3%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF--------SKRDERGIIT 61
D LL F+F +LR VLG + G EKP ++
Sbjct: 2 DLFTLLPLLAAVFLFWKLRSVLGTRNGIEKPPYDPYTNDPNEAADNVVTLPGAKRANAPD 61
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
+ + I +L L + + I S FDP++FL R +YE IV F +G
Sbjct: 62 AEEDAGEAARKRIGKLAGKDKSLERGLLAIHSRDPGFDPEEFLQGGRMAYEMIVTGFADG 121
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
+E L+ VY+ F + R + V +S VGID I A + + IT+R V
Sbjct: 122 DKRTLENLLSREVYESFATVIDERSERGEKVNASFVGIDKAVIEGAEVLRDEAQITVRFV 181
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ ISA+ D + +I D + +V D+WTF R + +PNW L++T
Sbjct: 182 SEMISATLDSSDEVIEGDLQEVAEVTDVWTFARPVKSRDPNWKLVATDA 230
>gi|254455846|ref|ZP_05069275.1| import inner membrane translocase, subunit Tim44 [Candidatus
Pelagibacter sp. HTCC7211]
gi|207082848|gb|EDZ60274.1| import inner membrane translocase, subunit Tim44 [Candidatus
Pelagibacter sp. HTCC7211]
Length = 198
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 33/227 (14%)
Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
+ I+L A I F+FL+LRG+LGK+TG E + F
Sbjct: 1 MSYSFEYIDIILLAMIAGFIFLRLRGILGKRTGFEGKAAPQFDKILKE------------ 48
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
+ K + + K+F+ A+ +YE I+ F +
Sbjct: 49 -------------------AVAKQAPVNNETFDENAQKEFIKGAKIAYETIITDFSDNDN 89
Query: 124 H--AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
+ L++ +Y FND+L R + + +GI+ I + + +T+ +
Sbjct: 90 KLTTSKPLLNKEIYDQFNDALKERSERGHYAEITFIGINSATIKEHKKIDKILNVTVDFI 149
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ I+ DKD +IS DPE K+ D W F R++ NPNW L++T
Sbjct: 150 AEVITCIKDKDKKIISGDPEKIKKIYDTWVFSRDVTSPNPNWQLVNT 196
>gi|254476055|ref|ZP_05089441.1| transporter, Tim44 family [Ruegeria sp. R11]
gi|214030298|gb|EEB71133.1| transporter, Tim44 family [Ruegeria sp. R11]
Length = 214
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 53/223 (23%), Positives = 101/223 (45%), Gaps = 11/223 (4%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
+L+ A I F+ L+L+ VLG + G EKP + + G +D
Sbjct: 1 MIQLLVLAGIAVFLILRLKSVLGTREGFEKPIAP-----PAERPSKRPEFEVIEGGPDQD 55
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
D + P G+ + + + V F +DF+ AR +YE I+ +F G++ I+
Sbjct: 56 ITDYV----PEGSAQAEDLAAMKKVEPSFQVRDFVQGARGAYEMILMAFERGELDDIQPY 111
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQFISA 187
+ V+ F +++ R+ +++ +G+ + + + S + T IT+R V + S
Sbjct: 112 LAPDVFDSFVTAVAHREDQGLTIEADFIGVRETTLTDTSYDSVTGEAQITMRFVAEMTSV 171
Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ ++ DP+ + D W F R + S+PNW L++T
Sbjct: 172 VRNSAGEIVEGDPKAIKRQKDTWVFGRTMGSSDPNWFLVATDA 214
>gi|259417909|ref|ZP_05741828.1| import inner membrane translocase, subunit Tim44 [Silicibacter sp.
TrichCH4B]
gi|259346815|gb|EEW58629.1| import inner membrane translocase, subunit Tim44 [Silicibacter sp.
TrichCH4B]
Length = 218
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 57/227 (25%), Positives = 113/227 (49%), Gaps = 11/227 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M+S +L+ A I F+ L+L+ VLG + G EKP + +R +
Sbjct: 1 MESPLIELLVLAGIAVFLILRLKSVLGTREGFEKPPLANN-----EAPAPQRKFEVIEGS 55
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
D + ++E G+ + + D+ + F +F+ AR +YE I+ F G++
Sbjct: 56 PDDDIVAYVDE----GSPQAQALSDMKRADSSFQVAEFVQGARGAYEMILMGFETGELDG 111
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQ 183
I+ + ++Q F D++S R+ +++ +G+ + I++A+ + +T +T+R VG+
Sbjct: 112 IQPFISEEIFQSFVDAVSAREDQGLTIEAEFIGVRETTIVDATFDAATSTAEVTVRFVGE 171
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
SA ++ ++ DP+ + D WTF R + +PNW+L++T
Sbjct: 172 LTSAVRNRAGEIVEGDPKAVKRQKDTWTFSRQMGTGDPNWLLVATDA 218
>gi|99082695|ref|YP_614849.1| import inner membrane translocase, subunit Tim44 [Ruegeria sp.
TM1040]
gi|99038975|gb|ABF65587.1| import inner membrane translocase subunit Tim44 [Ruegeria sp.
TM1040]
Length = 218
Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 60/227 (26%), Positives = 114/227 (50%), Gaps = 11/227 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M+S +L+ A I F+ L+L+ VLG + G EKP ++ +R +
Sbjct: 1 MESPLIELLVLAGIAVFLILRLKSVLGTREGFEKPPLAS-----SETRAPQRKFEVIEGS 55
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
D + ++E G+ +K + D+ + F +F+ AR +YE I+ F G++
Sbjct: 56 PDDDIIAYVDE----GSPQSKALSDMKRSDSSFQVAEFVQGARGAYEMILMGFETGELDG 111
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183
I+ + ++Q F D++S R+ +++ +G+ + II+A+ + T IT+R VG+
Sbjct: 112 IQPFISDDIFQSFVDAVSAREDQGLTIEAEFIGVRETSIIDATFDTATSTAEITVRFVGE 171
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
SA ++ ++ DP+ + D WTF R + +PNW+L++T
Sbjct: 172 LTSAVRNRAGEIVEGDPKAVKRQKDTWTFSRQMGTGDPNWLLVATDA 218
>gi|86136747|ref|ZP_01055325.1| transporter, Tim44 family protein [Roseobacter sp. MED193]
gi|85826071|gb|EAQ46268.1| transporter, Tim44 family protein [Roseobacter sp. MED193]
Length = 218
Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 54/226 (23%), Positives = 111/226 (49%), Gaps = 11/226 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M+S +L+ A I F+ L+LR VLG + G EKP + + + + G
Sbjct: 1 MESPLISLLVLAGIAVFLILRLRSVLGTREGFEKPPVA-----PTQKRSNGPDLEVIEGG 55
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
+D D + G+ K + + V F +F+ AR++YE I+ F +G++
Sbjct: 56 PDRDITDYV----EEGSDQAKALAAMKRVEPSFQVGEFVQGARSAYEMILMGFEKGELDD 111
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQ 183
I+ + V+ F ++++ R+ +++ +G+ + +++A +E T +T+R +G+
Sbjct: 112 IQGFLAEDVFDSFVEAVAQREDQGLTIEAEFIGVRETAVVDAIFDETTGVAELTMRFIGE 171
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
S +++ ++ D + + DIW F R++ +PNW L++T
Sbjct: 172 MTSVVRNREGEIVEGDAKAIKRQKDIWVFARSMGVDDPNWQLVATD 217
>gi|294675588|ref|YP_003576203.1| import inner membrane translocase subunit Tim44 [Rhodobacter
capsulatus SB 1003]
gi|294474408|gb|ADE83796.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
capsulatus SB 1003]
Length = 219
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 10/225 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M F +++ A I F+ L+L+ VLG + G E R + G
Sbjct: 1 MSPALFQLIVLAAIAIFLILKLKSVLGTREGYEDEPMPV----EAPGPRAADRFEVIEGG 56
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
D +D + P G+ + + V F+ FL ++ +YE I+ +F G + A
Sbjct: 57 PDHDIIDHV----PEGSDAAVALAQMKRVEPTFNVGAFLQGSKVAYEMILMAFERGDLSA 112
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQ 183
+ + + V + F +++ R+ V++S +G+ ++ + AS E +T+R G+
Sbjct: 113 VRRFLAPEVLEAFETAVADRQRQGLTVEASFLGLRELVLTEASFNESSREAEVTVRFGGE 172
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
IS + D + ++ DP+ K D WTF R + S+PNW L++T
Sbjct: 173 LISVARDANGQIVEGDPKAPRKQRDSWTFARVMGSSDPNWQLVAT 217
>gi|90420989|ref|ZP_01228893.1| conserved hypothetical protein, Tim44 domain [Aurantimonas
manganoxydans SI85-9A1]
gi|90334767|gb|EAS48543.1| conserved hypothetical protein, Tim44 domain [Aurantimonas
manganoxydans SI85-9A1]
Length = 238
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 76/240 (31%), Positives = 118/240 (49%), Gaps = 16/240 (6%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI------ 59
M G ++ A I F QLR VLGK+TGNE+P +S + R
Sbjct: 1 MSFGTIFFIIVAAIVLF---QLRSVLGKRTGNERPPFDPYSRRDAPRDDAARNDNVVTLP 57
Query: 60 -------ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
I ++I+++ GT +N +R I FDPK+FL+ A+ +YE
Sbjct: 58 NRRGGTEIEGEAAPAATPYEAIDKVAKPGTPVNAELRRIRDADPSFDPKEFLDGAKVAYE 117
Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
IV +F +G ++ L+ VYQ F ++S R+ ++ ++ S VGIDD I+ A ++
Sbjct: 118 MIVTAFADGDRKLLKNLLSPDVYQGFEQAISEREQRDERMQFSFVGIDDATIVGAEQKDR 177
Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+T+RIV Q ISA D ++ D E +V D+WTF R+ +PNW L T+ +
Sbjct: 178 EAMVTLRIVAQVISAVVKPDETVVDGDLETVVEVKDVWTFARDTRSRDPNWKLAGTESED 237
>gi|126730112|ref|ZP_01745924.1| transporter, Tim44 family protein [Sagittula stellata E-37]
gi|126709492|gb|EBA08546.1| transporter, Tim44 family protein [Sagittula stellata E-37]
Length = 219
Score = 172 bits (434), Expect = 4e-41, Method: Composition-based stats.
Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 10/227 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M + +L+ A I F+ L+LR VLG + G E+P + R + G
Sbjct: 1 MQNPLLQLLVLAGIAVFLVLRLRSVLGTRDGFERP----TPAEKSKETTSRREFEVIEGG 56
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
D D + E GT + + V F +FL AR +YE I+ F G +
Sbjct: 57 PDHDITDHVAE----GTDAANALAAMKRVEPSFSVSEFLGGARGAYEMILMGFERGDIEG 112
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183
++ + V++ F++ + R+S + + VG+ +M + AS + +T IT+R VG+
Sbjct: 113 LKPFLADDVFETFSEVVEARESEGLTIDADFVGVREMTLAGASFDPDTREAEITVRYVGE 172
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
S + + ++ P + DIWT+ R + +PNW L++T
Sbjct: 173 LTSVVKNAEGEIVEGSPTAVKRQKDIWTYARTMGADDPNWQLVATDE 219
>gi|119385510|ref|YP_916566.1| import inner membrane translocase, subunit Tim44 [Paracoccus
denitrificans PD1222]
gi|119375277|gb|ABL70870.1| import inner membrane translocase, subunit Tim44 [Paracoccus
denitrificans PD1222]
Length = 218
Score = 172 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 10/225 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M + +L+ A I F+ L+LRGVLG + G E P + + +R + G
Sbjct: 1 MSNPLLQLLVLAAIAVFLILRLRGVLGTRDGFESP--------RIPEEPVQRRRFDVIDG 52
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
+ I + G+ K + ++ + DF FL+ A+++YE I+ +F G +
Sbjct: 53 TAEAGDSDITDHAEPGSPAAKALAEMKRIEPDFAVGPFLSGAKSAYEMILMAFERGDLSE 112
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQ 183
+ + V + F + RK+ ++ +G + + A T +++R VG+
Sbjct: 113 VRGFLAPPVAEAFESVIEDRKARNLTTEAQFLGTRETALAGAEFTPATGMAELSVRFVGE 172
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
I A+ D D +I DP+ K D WTF R + +PNW L++T
Sbjct: 173 MIVATRDADGNVIEGDPKAARKQRDTWTFARRMGQDDPNWQLVAT 217
>gi|94498195|ref|ZP_01304756.1| import inner membrane translocase, subunit Tim44 [Sphingomonas sp.
SKA58]
gi|94422325|gb|EAT07365.1| import inner membrane translocase, subunit Tim44 [Sphingomonas sp.
SKA58]
Length = 217
Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats.
Identities = 56/222 (25%), Positives = 108/222 (48%), Gaps = 5/222 (2%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
++I++ A I F+ L+L VLGK+TG+E+ + + + G G G
Sbjct: 1 MYVIVILAMIAGFLALRLYSVLGKRTGHEQEPALRPAEDRAKVTVLQPGPTNHGGGDTVR 60
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+ + I +R +++ +FD F+ AR++Y+ ++++F+ G + L
Sbjct: 61 LAEGL-----IAPGAETGVRTLIATDRNFDVPQFVEGARSAYKMVLEAFWRGDREELAWL 115
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
D+ V F D+++ R+++ + + LV I+ +II A++ + T I +R + +
Sbjct: 116 CDADVLASFEDAIAAREADGHVLDNRLVRIEKAQIIEATVRDGTAEIAMRFEADIAAVTR 175
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
D+D +I+ DIWTF R+I ++PNW L T
Sbjct: 176 DRDGNVIAGSMTDAIDTKDIWTFTRDIRSADPNWKLSETDEA 217
>gi|217977326|ref|YP_002361473.1| import inner membrane translocase subunit Tim44 [Methylocella
silvestris BL2]
gi|217502702|gb|ACK50111.1| import inner membrane translocase subunit Tim44 [Methylocella
silvestris BL2]
Length = 239
Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats.
Identities = 62/233 (26%), Positives = 104/233 (44%), Gaps = 11/233 (4%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII------ 60
+S D ++FA + FV +LR +LG +TG EKP F + +
Sbjct: 3 NSFDVSTIIFALLAAFVVWKLRSILGARTGTEKPPRNPFIAGEPSAAKRPGEGEGKVIPL 62
Query: 61 -----TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115
+ + D G++ + I + F+ K FL A+ +YE IV
Sbjct: 63 PGASAPIAQAAAADPSSRWKPHAEPGSKAWAGLDAIAAADRSFEIKSFLEGAKTAYEMIV 122
Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY 175
F +G ++ L+D VY F +L+ R+ +++S V ID+ I +A +
Sbjct: 123 IGFADGDRPMLQNLLDKSVYDSFVTALTEREKRGDKIETSFVAIDNGAIADAELNGRMAE 182
Query: 176 ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
I +R Q I+A+ + +I +PE ++ D W F R++ +PNW LIST
Sbjct: 183 IAVRFSAQIITATRNAAGTVIEGNPEQVVEINDTWRFARDVGARDPNWRLIST 235
>gi|71083043|ref|YP_265762.1| translocase [Candidatus Pelagibacter ubique HTCC1062]
gi|71062156|gb|AAZ21159.1| Putative translocase transmembrane protein with Tim44 Pfam domain
[Candidatus Pelagibacter ubique HTCC1062]
Length = 197
Score = 171 bits (432), Expect = 7e-41, Method: Composition-based stats.
Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 34/227 (14%)
Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
+ I+L A I F+FL+LRG+LGKKTG E F ++
Sbjct: 1 MSYSFEYIDIILLAMIAGFIFLRLRGILGKKTGFEGKIPPQFEKEFQ------------- 47
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
+ N + + + + K+FL A+ +YE I+ F +
Sbjct: 48 -------------------KTNITPKPVSENFDEVSQKEFLKGAKIAYETIITDFSDSDN 88
Query: 124 H--AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
A + L+ ++Y F ++L R + + + +GI I E+++ +T+ V
Sbjct: 89 KLIASKPLLSKKIYDQFKEALEDRANKGHFAEITFIGIKSAVIKTHKKIEDSLEVTVDFV 148
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ I+ DKD ++S D + V D W F ++I SNPNW+LI+T
Sbjct: 149 SEIITCIKDKDKNIVSGDSDKIKTVYDTWVFSKDIKSSNPNWLLINT 195
>gi|332186336|ref|ZP_08388081.1| tim44-like domain protein [Sphingomonas sp. S17]
gi|332013704|gb|EGI55764.1| tim44-like domain protein [Sphingomonas sp. S17]
Length = 257
Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats.
Identities = 54/221 (24%), Positives = 107/221 (48%), Gaps = 7/221 (3%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
F ++L A + F+ L+L VLGK+TG+E+ + D + L + +
Sbjct: 44 FYVVLLAMVALFLALRLYSVLGKRTGHEQQPLPRSAD-------DRARPVVLPRAAEPAQ 96
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+ I R + +R I++ FD FL A+++Y +++F++G A+ +LV
Sbjct: 97 SPAPVANRNIDPRAEQGLRAIIAGEPGFDVNQFLGGAQSAYRMTLEAFWKGDEQALAELV 156
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
D+ V F ++++ R+ + + + L+ +D KI+++ + IT+R ++ + D
Sbjct: 157 DTDVLGAFAEAIAQRQEAGETLDNRLIRVDSAKIVDSQLAGRDARITVRFDADIVAVTRD 216
Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ +I+ + DIWTF R + +PNW L+ T
Sbjct: 217 AEGQVIAGSLSDAVETHDIWTFARTLKSGDPNWKLVDTDEA 257
>gi|307294078|ref|ZP_07573922.1| import inner membrane translocase subunit Tim44 [Sphingobium
chlorophenolicum L-1]
gi|306880229|gb|EFN11446.1| import inner membrane translocase subunit Tim44 [Sphingobium
chlorophenolicum L-1]
Length = 218
Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 5/222 (2%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
++I++ A I F+ L+L VLGK+TG+E+ + + + + +T G
Sbjct: 1 MYVIVILAMIAGFLALRLYSVLGKRTGHEQEPALRPAEERAKVTIVQPRPVTEMAGDSVR 60
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
D + I +R +++ +FD F+ A+++Y ++++F+ G +E L
Sbjct: 61 LADGL-----IAPGGEAGVRALIAADRNFDVPQFVEGAKSAYRMVLEAFWRGDRQELEWL 115
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
D+ V F D+++ R++ + + LV I+ ++I++A + I++R + +
Sbjct: 116 CDADVLASFQDAITAREAEGHVLDNRLVRIEKVQIVDAGVTGRMAEISLRFEADIAAVTR 175
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
D+D +++ DIWTF R++ ++PNW L T
Sbjct: 176 DRDGNVVAGSLTDAVGTNDIWTFTRDLRSTDPNWKLSETDEA 217
>gi|91762532|ref|ZP_01264497.1| Putative translocase transmembrane protein with Tim44 Pfam domain
[Candidatus Pelagibacter ubique HTCC1002]
gi|91718334|gb|EAS84984.1| Putative translocase transmembrane protein with Tim44 Pfam domain
[Candidatus Pelagibacter ubique HTCC1002]
Length = 197
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 34/227 (14%)
Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
+ I+L A I F+FL+LRG+LGKKTG E F ++
Sbjct: 1 MSYSFEYIDIILLAMIAGFIFLRLRGILGKKTGFEGKIPPQFEKEFQ------------- 47
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
+ N + + + + K+FL A+ +YE I+ F +
Sbjct: 48 -------------------KTNITPKPVSENFDEVSQKEFLKGAKIAYETIITDFSDSDN 88
Query: 124 H--AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
A + L++ ++Y F ++L R + + + +GI I E+++ +T+ V
Sbjct: 89 KLIASKPLLNKKIYDQFKEALEDRANKGHFAEITFIGIKSAVIKTHKKIEDSLEVTVDFV 148
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ I+ DKD ++S D + V D W F ++I SNPNW+LI+T
Sbjct: 149 SEIITCIKDKDKNIVSGDSDKIKTVYDTWVFSKDIKSSNPNWLLINT 195
>gi|85709415|ref|ZP_01040480.1| hypothetical protein NAP1_11058 [Erythrobacter sp. NAP1]
gi|85688125|gb|EAQ28129.1| hypothetical protein NAP1_11058 [Erythrobacter sp. NAP1]
Length = 219
Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 54/222 (24%), Positives = 106/222 (47%), Gaps = 4/222 (1%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
I++ A I F+ L+L VLG++ +E+ + + + + +
Sbjct: 2 ILEIVILAMIAAFLGLRLYSVLGRRAEHEE----ESVPQRFDAGDKPQAQPPIAGQPAQP 57
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
EL + + + +R+I S FD F++ A+ +YE +++ F+EG + +L
Sbjct: 58 APQRSIELEGVMPAVERGVREIASADRSFDIGQFMDGAKGAYEMVLEGFWEGDKDTLREL 117
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
D VY F+ ++ R+ + + L+ I++ +I +AS++ I + V + +
Sbjct: 118 CDDDVYAGFSAAIDAREEAGHTLDNKLIRIEETRIHSASMDGRMARIAVLFVADIAAVTR 177
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
DKD ++++ + + D+WTF RNI +PNWVL T G
Sbjct: 178 DKDGVVVAGSLDDAIESRDVWTFSRNIGSRDPNWVLDETDEG 219
>gi|110677837|ref|YP_680844.1| hypothetical protein RD1_0444 [Roseobacter denitrificans OCh 114]
gi|109453953|gb|ABG30158.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
Length = 220
Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 52/225 (23%), Positives = 108/225 (48%), Gaps = 10/225 (4%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
S +L+ A I F+ +L+ VLG + G E + + + R + G
Sbjct: 3 SSPLIQLLVLAGIAVFLIFRLKNVLGTRDGFEPGPAQAPTSDRSPT----RDFEVIEGGP 58
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
D D ++E + + + ++ + F+ +FL AR +YE IV + G++ I
Sbjct: 59 DLDITDHVDEH----SDAAEALANMKRLEPGFNVTEFLGGARGAYEMIVMGYENGELADI 114
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQF 184
+ + +Y+ F D ++ R+ ++++ +G+ ++K+I+A+++ +T +TIR +
Sbjct: 115 QPFLAEDIYESFVDGVAAREDQGLTIEANFIGVRELKLIDATLDPDTNEAELTIRFTAEL 174
Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
SA + + +I + D W+F R + +PNW+L+ST
Sbjct: 175 TSAVRNSEGEIIEGSLTDVKRQKDTWSFARPMGSDDPNWILVSTD 219
>gi|148259158|ref|YP_001233285.1| import inner membrane translocase, subunit Tim44 [Acidiphilium
cryptum JF-5]
gi|326402311|ref|YP_004282392.1| putative transporter [Acidiphilium multivorum AIU301]
gi|146400839|gb|ABQ29366.1| import inner membrane translocase, subunit Tim44 [Acidiphilium
cryptum JF-5]
gi|325049172|dbj|BAJ79510.1| putative transporter [Acidiphilium multivorum AIU301]
Length = 221
Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 6/221 (2%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
I+L A + F+ L+LR VLG++TG E+P + + I + + +
Sbjct: 7 VDIVLLALVAGFLVLRLRSVLGRRTGYERPPMPEPTAAGGMQRPGGPVIEGVAEPPRS-- 64
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+ T + + + I FDP FL+ A S+ IV +F G + A+ L+
Sbjct: 65 ---TRPVPAPHTVVGQTLARIAQAERGFDPARFLDGAEASFRRIVLAFAAGDLAALRPLL 121
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
V+ F +++ R + + +V I + I A + I +R V + + D
Sbjct: 122 TPGVFATFEQAVAQRAEAGETQHTEIVRIVEATIDEAELLGGEAVIVVRFVSDQQNYTRD 181
Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ +I+ E +++D+W+F +++ ++P W L + + G
Sbjct: 182 RQGQVIAG-TEAMTEIVDLWSFEKSLGAADPTWRLAAARSG 221
>gi|319407969|emb|CBI81623.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 230
Score = 168 bits (424), Expect = 6e-40, Method: Composition-based stats.
Identities = 74/231 (32%), Positives = 130/231 (56%), Gaps = 5/231 (2%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSG----KYVFSKRDERGIIT 61
M+ D ++++ I VF+QLR VLGK+TG E+P +SG + D
Sbjct: 1 MEF-DVVLVIALVIMVVVFMQLRNVLGKRTGFERPPFDPYSGCSKKQIETETVDHSLSFP 59
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
+K + I+ + P G+ LN +R I ++F P+ F+N + +YE I+ +F +G
Sbjct: 60 HQANARKKDFSEIDAIAPEGSALNDGLRAICQADSNFSPQFFVNGVQIAYEMIMTAFAQG 119
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
++KL+ V++ F ++ R+ E+ V+ + VGI+ ++ + A +++N ++T+RIV
Sbjct: 120 DRDQLKKLLSQDVFESFCAAIERREKREEKVEFTFVGINKVEFVAAEMQKNEEFLTVRIV 179
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ IS +Y+K N I DPE ++ D+WTFVRN +PNW L +T+ G+
Sbjct: 180 SEIISVTYNKQNECIDGDPEAIVEIKDVWTFVRNSLSQDPNWKLFATEDGD 230
>gi|49474924|ref|YP_032965.1| hypothetical protein BH01040 [Bartonella henselae str. Houston-1]
gi|49237729|emb|CAF26919.1| hypothetical protein BH01040 [Bartonella henselae str. Houston-1]
Length = 230
Score = 168 bits (424), Expect = 7e-40, Method: Composition-based stats.
Identities = 73/231 (31%), Positives = 131/231 (56%), Gaps = 5/231 (2%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFS----KRDERGIIT 61
M+ D +++L I VF+QLR VLGK+ G EKP +S + D ++
Sbjct: 1 MEF-DIVLVLALVIMVVVFMQLRNVLGKRIGFEKPPFDPYSSRSKKQIETETADNNASLS 59
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
+K++ I+ + P G+ LNK +R + F P+ F+ A+ +YE IV +F +G
Sbjct: 60 HQVNSQKNDFSEIDAIAPEGSELNKGLRALHQNDPHFSPQFFIKGAQVAYEMIVTAFAKG 119
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
+ + +L+ V++ F+ ++ R+ N + V+ + VGI+ ++ + A+++E ++TIRIV
Sbjct: 120 DRNQLRRLLSQDVFESFDAAIEQREKNNERVQFTFVGINKIEFVAAAMQEKEEFLTIRIV 179
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ ISA+Y++ I DP+ ++ DIWTFVRN ++PNW L +T+ +
Sbjct: 180 SEMISATYNEQGERIDGDPDTIVEIRDIWTFVRNSLSTDPNWKLFATEDED 230
>gi|154251701|ref|YP_001412525.1| import inner membrane translocase subunit Tim44 [Parvibaculum
lavamentivorans DS-1]
gi|154155651|gb|ABS62868.1| import inner membrane translocase subunit Tim44 [Parvibaculum
lavamentivorans DS-1]
Length = 247
Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats.
Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 19/228 (8%)
Query: 23 VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSK-------------------RDERGIITLG 63
VFL+LR VLG++TG+E+P +S RD
Sbjct: 19 VFLKLRSVLGRRTGHERPPYDPYSENPAPGNDKVVTLPKRGRTDAPASGARDRVIDAAGD 78
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
+ G+ L + I FD + FL+ AR +YE IV +F G
Sbjct: 79 PFANAGARFRWRGVTEEGSPLAGALDAIADADRTFDTESFLSGARMAYEMIVTAFAAGDR 138
Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
++ L+ VY F ++S R+ + S +GID I S++ +T+ +
Sbjct: 139 ATLKPLLSDDVYASFEGAISAREKAGLQIDQSFIGIDKAAITGGSLDGTRARLTVSFRSE 198
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
S++ + D +++ DP ++ D+WTF R++ +PNW L++T
Sbjct: 199 LTSSTKNSDGVVVEGDPVTVREITDVWTFERDLRNRDPNWKLVATGAA 246
>gi|49473777|ref|YP_031819.1| hypothetical protein BQ00970 [Bartonella quintana str. Toulouse]
gi|49239280|emb|CAF25603.1| hypothetical protein BQ00970 [Bartonella quintana str. Toulouse]
Length = 230
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 72/228 (31%), Positives = 128/228 (56%), Gaps = 5/228 (2%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKR----DERGIIT 61
M+ +++L I VF+QLR VLGK+ G EKP +SG+ D
Sbjct: 1 MEFN-IVLVLALVIMVVVFVQLRNVLGKRIGFEKPPFDPYSGRSKKQTETETADNIVSFP 59
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
+K++ I+ + P G+ LN+ +R + F P+ F+ A+ +YE IV +F +G
Sbjct: 60 HQGNSQKNDFSEIDAISPKGSALNEGLRALRQSDPHFSPQFFIKGAQVAYEMIVTAFAKG 119
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
++KL+ V++ F ++ R+ N + V+ + VGI+ ++ + A++++N ++T+RIV
Sbjct: 120 DRDQLKKLLSQNVFESFCAAIEQREKNNERVQFTFVGINKIEFVAAAMQDNEEFLTVRIV 179
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
+ ISA+Y++ LI DP+ ++ D+WTFV N S+PNW L +T+
Sbjct: 180 SEMISATYNEQEELIDGDPDAIVEIRDVWTFVHNSLSSDPNWKLFATE 227
>gi|254472289|ref|ZP_05085689.1| import inner membrane translocase, subunit Tim44 [Pseudovibrio sp.
JE062]
gi|211958572|gb|EEA93772.1| import inner membrane translocase, subunit Tim44 [Pseudovibrio sp.
JE062]
Length = 248
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 66/243 (27%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT-------- 61
D ++F +FL+LR VLG +TGNE+ +S + + +
Sbjct: 6 DVYNIIFLIAAVVIFLRLRSVLGNRTGNERQPFDPYSAQQKQDSQKTQAPENEDNVIPLP 65
Query: 62 -----------LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNS 110
+ ++ I+++ GT LN +R+I F+PK+F+ AR +
Sbjct: 66 GSEHVHHDPERAEREAREQIEAEIDKVAKKGTDLNHGLREIWKAEPSFNPKEFVEGARGA 125
Query: 111 YEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE 170
YE I+ SF +G ++ L+ V+ F+ ++ R+S + V+S+ VGID I+ A
Sbjct: 126 YEIILMSFAQGDRRTLKDLLSPEVFTGFSAAIDDRESRNERVESTFVGIDKADIVEAVFN 185
Query: 171 ENTV--YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ +T+R Q I+A+ D +N ++ DP ++ DIWTF R ++PNW L++T
Sbjct: 186 QKDSLAEVTVRFKSQLITATRDSENRIVDGDPTAVSELTDIWTFARVTGVNDPNWKLVAT 245
Query: 229 KLG 231
+
Sbjct: 246 ESA 248
>gi|163732954|ref|ZP_02140398.1| hypothetical protein RLO149_09850 [Roseobacter litoralis Och 149]
gi|161393489|gb|EDQ17814.1| hypothetical protein RLO149_09850 [Roseobacter litoralis Och 149]
Length = 220
Score = 167 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 52/225 (23%), Positives = 104/225 (46%), Gaps = 10/225 (4%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
S +L+ A I F+ +L+ VLG + G E S + R + G
Sbjct: 3 SSPLIQLLVLAGIAVFLIFRLKNVLGTRDGFE----PGPSQTPMSDSAPMRDFEVIEGGP 58
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
D D + + + + ++ + F+ +FL AR +YE IV + G++ I
Sbjct: 59 DLDITDHV----EENSDAAEALANMKRLEPGFNVTEFLGGARGAYEMIVMGYENGELADI 114
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQF 184
+ + +Y+ F D ++ R+ +++S +G+ ++K+++A+++ T +TIR +
Sbjct: 115 QPFLAEDIYESFVDGVAAREDQGLTIEASFIGVRELKLMDATLDPETNEGELTIRFTAEL 174
Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
SA + + +I + D W+F R + +PNW+L+ST
Sbjct: 175 TSAVRNSEGEIIEGSLTEVKRQKDTWSFARPMGSDDPNWILVSTD 219
>gi|114706069|ref|ZP_01438972.1| Calcium-binding EF-hand [Fulvimarina pelagi HTCC2506]
gi|114538915|gb|EAU42036.1| Calcium-binding EF-hand [Fulvimarina pelagi HTCC2506]
Length = 229
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 71/229 (31%), Positives = 117/229 (51%), Gaps = 15/229 (6%)
Query: 19 ITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSK---------------RDERGIITLG 63
+ V QL VLG++TGNE+P ++ + + R
Sbjct: 1 MAAIVLFQLYNVLGRRTGNERPPFDPYTRNRSRDRSGESEDAAGDNVVTLPNRRANDRNE 60
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
I+ + GT LNK +R I +FDPK+FL A+ +YE +VD+F +G
Sbjct: 61 DVPAGVRYAEIDRVSETGTPLNKELRKIKDADPNFDPKEFLEGAKIAYEMVVDAFAQGDR 120
Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
+ + L+ VY+ F +++TR+ + + ++SS +GIDD KI++A + +TIRIV +
Sbjct: 121 NTLRNLLSPDVYEGFEAAIATREESGETMRSSFIGIDDAKIVSAELRGREALVTIRIVSE 180
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
ISA+ + + ++ D E +V DIWTF R+ +PNW L+ T+ E
Sbjct: 181 MISATLNSNGDVLDGDMETVVEVRDIWTFGRDTKSRDPNWKLVGTESEE 229
>gi|294010816|ref|YP_003544276.1| hypothetical protein SJA_C1-08300 [Sphingobium japonicum UT26S]
gi|292674146|dbj|BAI95664.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
Length = 218
Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 50/222 (22%), Positives = 105/222 (47%), Gaps = 5/222 (2%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
++I++ A I F+ L+L VLGK+TG+E+ + +R + I+ +
Sbjct: 1 MYVIVILAMIAGFLALRLYSVLGKRTGHEQEPALR-----PAEERAKVTIVQPRPVPEMA 55
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
I +R +++ FD F+ A+ +Y+ ++++F+ G +E L
Sbjct: 56 GDSVRLSEGLIAPGGEAGVRALIAADRSFDVPQFVEGAKAAYKMVLEAFWRGDRQELEWL 115
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
D+ V F ++++ R++ + + LV I+ ++I++A + I++R + +
Sbjct: 116 CDADVLASFEEAIAAREAEGHVLDNRLVRIEKVQIVDAGVTGRMAEISLRFEADIAAVTR 175
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
D+D +++ DIWTF R++ ++PNW L T
Sbjct: 176 DRDGNVVAGSLTDAVGTNDIWTFTRDLRSTDPNWKLSETDEA 217
>gi|163757477|ref|ZP_02164566.1| hypothetical protein HPDFL43_18742 [Hoeflea phototrophica DFL-43]
gi|162284979|gb|EDQ35261.1| hypothetical protein HPDFL43_18742 [Hoeflea phototrophica DFL-43]
Length = 234
Score = 165 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 66/217 (30%), Positives = 114/217 (52%), Gaps = 7/217 (3%)
Query: 23 VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG-------IITLGKGKKKDNLDSIN 75
VF+QLR VLGK+TG+E+P + +D + + D +++
Sbjct: 18 VFIQLRAVLGKRTGHERPPREQMERRDQTDAQDGIDDPKVVTLPRRGREAAEPDAFAAVD 77
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
G+ LNK +R++V F+PK+F+ A +YE IV ++ +G ++ L+ V+
Sbjct: 78 AYAEPGSDLNKGLRELVKADPSFNPKEFVGGATMAYEMIVSAYADGDRKTLKSLLSREVF 137
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
F ++ R++ + V+S+ VGI+ II A ++ +T+RI+ Q ISA+ DKD +
Sbjct: 138 DGFVSAIDEREARGETVRSNFVGIEKANIIQAEMKGTEANVTLRIISQLISATLDKDGEV 197
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ D V D+WTF R+ +PNW LI+T+ +
Sbjct: 198 VEGDLVEVTDVNDVWTFTRDTRSRDPNWRLIATEADQ 234
>gi|240849776|ref|YP_002971164.1| putative translocase transmembrane protein [Bartonella grahamii
as4aup]
gi|240266899|gb|ACS50487.1| putative translocase transmembrane protein [Bartonella grahamii
as4aup]
Length = 230
Score = 165 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 71/228 (31%), Positives = 128/228 (56%), Gaps = 5/228 (2%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFS----KRDERGIIT 61
M+ +++ + +F+QLR VLGK+ G EKP +S + D
Sbjct: 1 MEFDVI-LVIALVVMVVIFVQLRNVLGKRIGFEKPPFDPYSRRSKKQVEAETADNIVSFP 59
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
K +KD+ I+++ P G+ LNK +R++ + F P+ F+ A+ +YE IV +F +G
Sbjct: 60 HQKNSQKDDFSEIDKISPEGSILNKNLRELHKIDPQFSPQFFIKGAQIAYEMIVTAFAKG 119
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
+ ++ L+ V++ F ++ R+ N++ ++ + VGI+ ++ + A+I+E +TIRIV
Sbjct: 120 DRNQLKSLLCQDVFESFCTAIEQREKNKERIEFTFVGINKIEFVAAAIQEKDELLTIRIV 179
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
+ IS +Y++ I DP+ ++ DIWTFVRN S+PNW L +T+
Sbjct: 180 SEMISVTYNEQGERIDGDPDAIVEIRDIWTFVRNSLSSDPNWKLFATE 227
>gi|315122039|ref|YP_004062528.1| hypothetical protein CKC_01445 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495441|gb|ADR52040.1| hypothetical protein CKC_01445 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 231
Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats.
Identities = 154/231 (66%), Positives = 182/231 (78%), Gaps = 4/231 (1%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYV----FSKRDERGIIT 61
M GDFLILL FI FV L+LR LGK+TG+EKP SGF + K D +++
Sbjct: 1 MYLGDFLILLCFFIAVFVILKLRSALGKRTGHEKPLSGFSPEQRKKSIFSPKGDGWNVVS 60
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
L KGKK+D LDSIN LFP+GTRLNKV RDIVS+Y+ FDPKDFLN R+SY IVDSFFEG
Sbjct: 61 LNKGKKEDVLDSINGLFPVGTRLNKVFRDIVSIYSGFDPKDFLNGVRDSYGVIVDSFFEG 120
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
+ IEKL+DS+VYQDF DSL +KS+EK +KSSLVG+DD+KI+NAS+E N +YIT RIV
Sbjct: 121 NILKIEKLIDSKVYQDFADSLLIQKSSEKVIKSSLVGLDDLKIVNASVEGNNIYITTRIV 180
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
GQFISASYDK+N LI+ DPEIFGKV+D+WTFVRNI SNPNW+LISTK GE
Sbjct: 181 GQFISASYDKNNALIAGDPEIFGKVVDVWTFVRNISSSNPNWILISTKPGE 231
>gi|163867402|ref|YP_001608597.1| hypothetical protein Btr_0112 [Bartonella tribocorum CIP 105476]
gi|161017044|emb|CAK00602.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
Length = 230
Score = 164 bits (414), Expect = 9e-39, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 124/228 (54%), Gaps = 5/228 (2%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII----T 61
M+ +++ + +F+QLR VLGK+ G EKP +S + E
Sbjct: 1 MEFDVI-LVIALVVMVVIFVQLRSVLGKRIGFEKPPFDPYSRRSKKQTEAETTENIVSFP 59
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
K +K + I+E+ P G+ LN+ +R + + F P+ F+ A+ +YE IV +F +G
Sbjct: 60 HQKNLQKGDFSEIDEIAPEGSILNENLRALRRIDPHFSPQSFIKGAQIAYEMIVTAFAKG 119
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
++ L+ V++ F + R+ N++ ++ + VGI+ ++ ++A+I+E +TIRI+
Sbjct: 120 DRSQLKSLLCQDVFESFCAVIEQREKNKERIEFTFVGINKIEFVSAAIQEKDELLTIRII 179
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
+ IS +Y++ I +P+ ++ DIWTFVRN +PNW L +T+
Sbjct: 180 SEMISVTYNEQGERIDGNPDAIVEIRDIWTFVRNSLSPDPNWKLFATE 227
>gi|296444992|ref|ZP_06886953.1| import inner membrane translocase subunit Tim44 [Methylosinus
trichosporium OB3b]
gi|296257413|gb|EFH04479.1| import inner membrane translocase subunit Tim44 [Methylosinus
trichosporium OB3b]
Length = 229
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 59/223 (26%), Positives = 104/223 (46%), Gaps = 1/223 (0%)
Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
+ D IL+ A + FV +L VLG +T E +G T
Sbjct: 6 AFDPSILVLAALAAFVVWKLWSVLGVRTDRENSAAGRVPSPGRRFGVVPPPASTGFAAPP 65
Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
+D + L G++ + + + FD K+FL A+ +YE +V+SF +G +
Sbjct: 66 QD-QSRWDGLAEPGSKGWAGLDALAAADRGFDAKNFLEGAKKAYELVVESFAKGDREMLR 124
Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
L+ + VY F +++ R+ ++ ++ +V I+ + +A +E + IR V + ISA
Sbjct: 125 NLLANDVYDSFAKAIAAREQRGESAEARVVAIETASVEDAQVERGRAQVAIRFVVKLISA 184
Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
D +I D E + D+WTF R+I +PNW L++T+
Sbjct: 185 RRDSAGEVIEGDVERPIDITDLWTFARDISSRDPNWKLVATET 227
>gi|114328998|ref|YP_746155.1| transporter [Granulibacter bethesdensis CGDNIH1]
gi|114317172|gb|ABI63232.1| transporter [Granulibacter bethesdensis CGDNIH1]
Length = 231
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 49/221 (22%), Positives = 96/221 (43%), Gaps = 3/221 (1%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
++L I F+ L+LR VLG++ G E+P G+ + +
Sbjct: 14 VDLVLLGMIAVFLVLRLRSVLGRRVGFERPEVPANQGQTGNRIPGLPVRLRRPDAAVAEA 73
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+ L + +V+ + V FD FLN A ++ IV ++ +G+ A+ L+
Sbjct: 74 RTYV--LPDASSPTGQVLARMKEVDRSFDAVRFLNNAEQAFRVIVTAYAQGEREALRPLL 131
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
+ F ++ R+ + ++ + I D++I NA +E+ +TIR V + +
Sbjct: 132 TEATFTIFCQAIDAREQDGARQQTEIQSIRDIRIENARLEQTQAALTIRFVSDQHNVMLN 191
Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ + E +++D+WTF R++ +P W L T
Sbjct: 192 RTGEPVEG-VEGLTEIVDVWTFERDLASRDPTWRLSGTDNA 231
>gi|121602069|ref|YP_989543.1| Tim44 domain-containing protein [Bartonella bacilliformis KC583]
gi|120614246|gb|ABM44847.1| Tim44 domain protein [Bartonella bacilliformis KC583]
Length = 230
Score = 162 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 66/228 (28%), Positives = 119/228 (52%), Gaps = 5/228 (2%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII----T 61
M D + ++ + VF+QLR VLGK+TG E+P +SG +
Sbjct: 1 MGF-DVVFVIALVVMVIVFVQLRNVLGKRTGFERPPFNPYSGHSKKQVEADTTGDITSFP 59
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
+K + I+ + P G+ LN +R I + F P+ F+N + +YE I+ +F +G
Sbjct: 60 QQINAQKGDFSDIDAIAPKGSALNDGLRAIRQADSSFSPQFFINGVQVAYEMIMTAFAQG 119
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
+++L+ V++ F ++ R+ + ++ + VGI+ ++ I A +++ +T+RIV
Sbjct: 120 NRDQLKELLSQNVFESFCKAIEQREKRNERIQFTFVGINKVEFIAAEMQKREELLTVRIV 179
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
+ IS Y++ I DPE ++ D+WTFVR+ NPNW L +T+
Sbjct: 180 SEIISVIYNEQEERIDGDPEAIVEIRDVWTFVRDSVSKNPNWKLFATE 227
>gi|21328722|gb|AAM48728.1| conserved hypothetical protein [uncultured marine proteobacterium]
Length = 216
Score = 162 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 11/222 (4%)
Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
+L A I ++ L+LRGVLG + G+E P + + D + + G +
Sbjct: 2 QIIQLLALAGIAIYLILKLRGVLGTRDGHEGPRANIVARAD-----DRPKLEVIDGGPDQ 56
Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
D D + + + + F +FL ++++YE I+ +F G + +++
Sbjct: 57 DITDH----AAEDSDAARALLGMKHAEPSFSVTEFLYGSKSAYEMILMAFENGDLGSVKA 112
Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV--YITIRIVGQFIS 186
++ VY F + RK+ ++++ +G+ D ++ A+ + T I +R + + S
Sbjct: 113 FLNQDVYDAFASVVEARKAQGLSIEAEFIGVRDTGLMGATFDPKTNAAEIDVRFICELTS 172
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ D +I + + D+WTF R + +PNW LI+T
Sbjct: 173 VLRNSDGDIIEGNETEVKRQRDVWTFGRTMGADDPNWQLIAT 214
>gi|296283090|ref|ZP_06861088.1| hypothetical protein CbatJ_05690 [Citromicrobium bathyomarinum
JL354]
Length = 220
Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats.
Identities = 51/222 (22%), Positives = 105/222 (47%), Gaps = 3/222 (1%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
+ I++ A I F+ L+L VLG++ +E+ + T +
Sbjct: 2 IYEIVILAMIAVFLGLRLYSVLGRRAEHEEEPVPHRFDAKDKAGLAAAPQTTQAPPRAVT 61
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
++ ++ P+ + + ++ I++ FD FL A+ +Y I++++++G + L
Sbjct: 62 EQEAKPDVLPV---VERGVQSIIAADRGFDITSFLEGAKGAYGMILEAYWKGDKETLRDL 118
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
D VYQ F ++ R+ + + + L+ I+D I +A +E IT+R V + ++
Sbjct: 119 CDESVYQGFAQAIDAREEAGETLDNRLIRIEDATIRDAELERKEARITVRFVADIAAVTH 178
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
D+D +++ + + DIWTF R + P+W L+ T G
Sbjct: 179 DRDGNMVAGSLDDAIESRDIWTFARRVDSRTPDWQLVETDEG 220
>gi|13473820|ref|NP_105388.1| hypothetical protein mlr4544 [Mesorhizobium loti MAFF303099]
gi|14024571|dbj|BAB51174.1| mlr4544 [Mesorhizobium loti MAFF303099]
Length = 211
Score = 161 bits (406), Expect = 9e-38, Method: Composition-based stats.
Identities = 63/211 (29%), Positives = 111/211 (52%), Gaps = 8/211 (3%)
Query: 30 VLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT--------LGKGKKKDNLDSINELFPIG 81
+LG++TG+E+P +S ++ G+ D +I+
Sbjct: 1 MLGRRTGSERPPFDPYSAARTDKDATQKPENVVSLPRKRLPGEPAPADAYTAIDAFAKPD 60
Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
T LNK +R I FDPK F++ A+ +YE IV ++ +G ++ L+ V+ F +
Sbjct: 61 TDLNKGLRAIKDNDPSFDPKGFVDGAKMAYEMIVMAYADGDRKTLKNLLSREVFDGFVAA 120
Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201
+ R++ + ++SS VGID I++A ++ ++T+RI+ + ISA+ DK +I DPE
Sbjct: 121 IGEREAKSEKIQSSFVGIDKADIVSAEMKGGEAHVTLRIISELISATRDKAGTVIDGDPE 180
Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+V D+WTF R+ +PNW LI+T+ +
Sbjct: 181 TVAEVKDVWTFARDTRSRDPNWKLIATEEED 211
>gi|294085200|ref|YP_003551960.1| hypothetical protein SAR116_1633 [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292664775|gb|ADE39876.1| hypothetical protein SAR116_1633 [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 212
Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 48/224 (21%), Positives = 101/224 (45%), Gaps = 16/224 (7%)
Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
I++FA I + L+L+ VLG++TG E+P + +
Sbjct: 2 PYIDIIIFAVIAVLLVLRLKSVLGQRTGFEQP----------------QDKKPMQAANDG 45
Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
D + + G + + +F FL A ++E ++ ++ EG + +++
Sbjct: 46 DVVPFPSNKDETGALNGHGIATLRKADRNFTEAAFLGGATQAFEMVLRAYAEGDLAQLKR 105
Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
L+ + Q F S+ R +N++++ L I + I+N ++ ++ +T+ +
Sbjct: 106 LLGYDLLQSFTQSIQKRNANKESLTIDLENIKEASILNIAVVDSVAAVTVHFHSVQTRIA 165
Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
D D +I D +++DIWTF R++ ++PNW L+ T+ +
Sbjct: 166 RDADENIIDEDESQSQEIVDIWTFERDLTLNDPNWKLVETETAD 209
>gi|190889648|ref|YP_001976190.1| translocase transmembrane protein [Rhizobium etli CIAT 652]
gi|190694927|gb|ACE89012.1| putative translocase transmembrane protein [Rhizobium etli CIAT
652]
Length = 233
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 74/214 (34%), Positives = 112/214 (52%), Gaps = 6/214 (2%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG------I 59
M S DF+ L F +F QLR VLG++TGNEKP + +
Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYQPRDAAPAEAADAGKVVTLP 60
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ +D +I+ + GT LN+ +R + F PK+FLN AR +YE IV ++
Sbjct: 61 RRDATAEDEDRFSAIDAVAAPGTPLNESLRALNKADASFTPKEFLNGARMAYEMIVMAYA 120
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
+G ++ L+ VY F+ ++ R++ + VKS+ VGID +I +A + IT+R
Sbjct: 121 DGDRKTLKNLLSREVYDGFDAAIGEREARGEKVKSTFVGIDKAEITHAETKGTEAQITVR 180
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213
IV Q ISA+YDK ++LI D E +V D+WTF
Sbjct: 181 IVSQLISATYDKADVLIEGDAENVAEVNDLWTFA 214
>gi|114769764|ref|ZP_01447374.1| transporter, Tim44 family protein [alpha proteobacterium HTCC2255]
gi|114549469|gb|EAU52351.1| transporter, Tim44 family protein [alpha proteobacterium HTCC2255]
Length = 218
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 11/225 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M F +++ I FV L+LR VLG ++G E + + + +E
Sbjct: 1 MSDPMFQLVILGVIALFVILRLRSVLGTRSGFEPTNVPKPTFQKEKTPTEEN-------- 52
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
I + + + K + + ++F +F+ A +YE I+ +F EG
Sbjct: 53 -DNKIDRDIADYVSVDSPSGKALSQMKKAESNFLVTEFIQGAGQAYEMILIAFEEGDRDG 111
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN--TVYITIRIVGQ 183
+ + VY F ++ R+ + N+ ++ +G+ ++K+ +A + IT+ +V +
Sbjct: 112 LRPFLADDVYDSFESVITEREKAQLNIDATFIGLREIKLTSAEYDWRAKEGEITLSLVAE 171
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ + ++ +I D K D WTF R + NPNW L++T
Sbjct: 172 LTTVVKNINDEIIEGDKNKIKKQKDTWTFSRIMGNDNPNWTLVAT 216
>gi|103487499|ref|YP_617060.1| import inner membrane translocase, subunit Tim44 [Sphingopyxis
alaskensis RB2256]
gi|98977576|gb|ABF53727.1| import inner membrane translocase, subunit Tim44 [Sphingopyxis
alaskensis RB2256]
Length = 221
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 7/223 (3%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
F I+L A I F+ ++L VLGK+TG+E+ R I L G+
Sbjct: 4 FSIVLLAMIAAFLGMRLYSVLGKRTGHEQEPVLPRRDD-----RSAPAPIRLDDGETSAI 58
Query: 71 LDSINELFPI--GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
+ S + + +R +++ +FD F+ AR +Y I+++F++G +
Sbjct: 59 VTSATDTAGLVYEPSAEAGLRQLLANDRNFDAGRFMEGARAAYRMILEAFWKGDRETLRD 118
Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
L D Y F +++ R++ + +++ L+ ID KI A + IT+R + +
Sbjct: 119 LCDDDSYDAFVEAIDAREARGETLENRLIRIDSAKITAAELNRGEARITVRYHADISAIT 178
Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
D D LI+ + D+WTF R I ++PNW+L +
Sbjct: 179 RDADGKLIAGSMSDAAQTDDLWTFRRQIGSNDPNWLLDEAESA 221
>gi|161170260|gb|ABX59230.1| uncharacterized protein conserved in bacteria [uncultured marine
bacterium EB000_55B11]
gi|297183789|gb|ADI19912.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
Length = 218
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 11/225 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M F +++ I FV L+LR VLG ++G E + + + +E
Sbjct: 1 MSDPMFQLVILGVIALFVILRLRSVLGTRSGFEPTNVPKPTFQKEKTPTEEN-------- 52
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
I + + + K + + ++F +F+ A +YE I+ +F EG
Sbjct: 53 -DNKIDRDIADYVSVDSSSGKALSQMKKAESNFLVTEFIQGAGQAYEMILIAFEEGDRDG 111
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN--TVYITIRIVGQ 183
+ + VY F ++ R+ + N+ ++ +G+ ++K+ +A + IT+ +V +
Sbjct: 112 LRPFLADDVYDSFESVITEREKAQLNIDATFIGLREIKLTSAEYDWRAKEGEITLSLVAE 171
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ + ++ +I D K D WTF R + NPNW L++T
Sbjct: 172 LTTVVKNINDEIIEGDKNKIKKQKDTWTFSRIMGNDNPNWTLVAT 216
>gi|85374926|ref|YP_458988.1| hypothetical protein ELI_10495 [Erythrobacter litoralis HTCC2594]
gi|84788009|gb|ABC64191.1| hypothetical protein ELI_10495 [Erythrobacter litoralis HTCC2594]
Length = 215
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 53/222 (23%), Positives = 106/222 (47%), Gaps = 8/222 (3%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
F I++ A I F+ ++L VLG++ E+ + + ++ D K
Sbjct: 2 IFEIVILAMIAAFLGMRLYSVLGQRAEQEE--------EVIPNRYDAGDQPQQAAPKPAT 53
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+ + + + + +R I + FD FL A+ +Y +++++++G + +L
Sbjct: 54 QVVELQPNPNLHPSVEQGVRAIAAADRGFDVSSFLEGAKGAYGMVLEAYWKGDKETLREL 113
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
D VY F ++ R+ + + ++L+ I+D I +A ++ T +T+R V + +
Sbjct: 114 CDDDVYASFAGAIDAREEAGEALDNTLIRIEDAVIRDAEMDGRTARVTVRFVADIAAVTR 173
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
DKD +I+ + + DIWTF RN+ + P+WVL T G
Sbjct: 174 DKDGNVIAGSLDDAIESRDIWTFSRNVDAAGPDWVLDETDEG 215
>gi|84514927|ref|ZP_01002290.1| hypothetical protein SKA53_11923 [Loktanella vestfoldensis SKA53]
gi|84511086|gb|EAQ07540.1| hypothetical protein SKA53_11923 [Loktanella vestfoldensis SKA53]
Length = 211
Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 10/217 (4%)
Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73
++ A I F+ L+LRGVLG + G EKP + + R + + G D D
Sbjct: 1 MVLAGIAVFLILRLRGVLGTREGFEKPAVT----RQETTPRRKHDFDVIEGGPDLDITDH 56
Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
+ L + V DF+ +FL AR +YE I+ +F + +I +
Sbjct: 57 VQADSAAAKALA----AMKRVDPDFNVTEFLGGARGAYEMILMAFENSDLDSIVPFISHD 112
Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQFISASYDK 191
VY+ F + R+ V +S +GI DM + +A +E T +++R + S +
Sbjct: 113 VYEAFASVVDDRQRQGLTVTASFIGISDMTLAHAEFDEATKEGEVSVRFKSEMTSVVRNA 172
Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ ++ + +++D WTF R + +PNW L++T
Sbjct: 173 EGEVVEGSTKEIKRLVDTWTFARKMDAGDPNWKLVAT 209
>gi|87198608|ref|YP_495865.1| import inner membrane translocase, subunit Tim44 [Novosphingobium
aromaticivorans DSM 12444]
gi|87134289|gb|ABD25031.1| import inner membrane translocase, subunit Tim44 [Novosphingobium
aromaticivorans DSM 12444]
Length = 247
Score = 157 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 52/229 (22%), Positives = 103/229 (44%), Gaps = 7/229 (3%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKK-TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
I++ A I F+ L+L VLG++ +E+P +K + G + + +
Sbjct: 19 IVQIVILAMIAAFLGLRLYSVLGRRPERDEEPMRRRIEQPDPSAKPHQPGSMGNARSAET 78
Query: 69 DNLDSINELFPI------GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
L +R I++ FD FL A+ +Y I+++F+ G
Sbjct: 79 GALAPRPRELAAPEAQTFDNSAEAGVRAIIAADRRFDVAQFLAGAKGAYGMILEAFWRGD 138
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
+ +L D+ VY+ F ++ R + + + + L+ I++ +II ASIE T I +R +
Sbjct: 139 KEELAQLCDADVYEGFASAIDARANAGETIDARLIRIEEARIIGASIEGTTARIAVRFLA 198
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
S + + + +++ + D+WTF R++ +P+W+L T
Sbjct: 199 DIASVTRNAEGHVVAGSLDDAIDARDLWTFRRDLTSRDPDWLLDETDEA 247
>gi|148556731|ref|YP_001264313.1| import inner membrane translocase subunit Tim44 [Sphingomonas
wittichii RW1]
gi|148501921|gb|ABQ70175.1| import inner membrane translocase, subunit Tim44 [Sphingomonas
wittichii RW1]
Length = 226
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 50/228 (21%), Positives = 96/228 (42%), Gaps = 7/228 (3%)
Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
++ I++ A + FV +L VLG++TG+E+ +
Sbjct: 5 QRIGGPVTTIVILAMVFLFVAFRLWSVLGRRTGHEQTIARPAEAAPAPIGAGRSLPENAT 64
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
+ + R +R I S FD FL AR++Y I+++++ G
Sbjct: 65 PVLPA-------KPAVVEPRAEAGVRAIQSADGGFDAAQFLEGARSAYRMILEAYWRGDE 117
Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
A+ +L D VY+ F +++ R+ + + + LV I+ I A + T +T+R
Sbjct: 118 EALRRLTDDDVYEAFAAAITERREANEVLDNRLVSIESAVIEQARMNGQTANVTVRFDAD 177
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ + D + +++ D+WTF R++ +PNW L+ T
Sbjct: 178 IAAVTRDGEGNVVAGSLTDAVPTHDVWTFSRHVRSDDPNWTLVETDEA 225
>gi|323135818|ref|ZP_08070901.1| import inner membrane translocase subunit Tim44 [Methylocystis sp.
ATCC 49242]
gi|322398909|gb|EFY01428.1| import inner membrane translocase subunit Tim44 [Methylocystis sp.
ATCC 49242]
Length = 233
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 6/224 (2%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG----KGKKK 68
+++FA + FV +LR VLG + + P F + ++
Sbjct: 12 LVVFAALAVFVIWKLRSVLGVRVDRDAPPPAQFQPRRPSPAGATPLPGAAPLDDGAAARR 71
Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
+ S + G + I + FD + FL+ AR +Y+ IV +F G +
Sbjct: 72 NVPASWEGVAEKGGAAASGLDAIAAADPRFDGQAFLDGARRAYDMIVSAFARGDRDQLRP 131
Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
L+ V+ F ++ R+ N + ++++++ ID + +A IT+R + ++
Sbjct: 132 LLSKEVFDGFAAEIARREENGETMETAVIAIDSALVESARAAPRLNEITVRFATRLMNLR 191
Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+K+ I V+++WTF R+ S+PNW L++T+ E
Sbjct: 192 RNKEGETIEG--GHTIPVVELWTFARDPRASDPNWKLVATRPAE 233
>gi|89052682|ref|YP_508133.1| import inner membrane translocase, subunit Tim44 [Jannaschia sp.
CCS1]
gi|88862231|gb|ABD53108.1| import inner membrane translocase subunit Tim44 [Jannaschia sp.
CCS1]
Length = 235
Score = 155 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 54/215 (25%), Positives = 94/215 (43%), Gaps = 10/215 (4%)
Query: 17 AFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINE 76
A I F+ L+LR VLG + G EKP S + R + G D I +
Sbjct: 28 AGIAIFLILRLRSVLGTRDGFEKPPVAPGSSRRDV----RRDFEVIEGGP----DDDILD 79
Query: 77 LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136
G+ K + + F +FL AR +YE I+ +F G V + + V +
Sbjct: 80 HVDDGSDSAKALAAMKMAEPGFRVGEFLGGARQAYEMILMAFERGDVDGLRPFLADDVLE 139
Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN--TVYITIRIVGQFISASYDKDNL 194
F + R ++++ VG+ ++ + A+ + + +T+R +G+ S + D
Sbjct: 140 TFETVIDQRNEQGLSIEAEFVGVREITLQEATFDRSAGVGEVTVRFIGELTSVVRNADGE 199
Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
+I D + D+WTF R + +PNW L++T
Sbjct: 200 IIEGDATEIKRQRDVWTFARKMGADDPNWALVATD 234
>gi|304320483|ref|YP_003854126.1| hypothetical protein PB2503_04547 [Parvularcula bermudensis
HTCC2503]
gi|303299385|gb|ADM08984.1| hypothetical protein PB2503_04547 [Parvularcula bermudensis
HTCC2503]
Length = 222
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 51/222 (22%), Positives = 104/222 (46%), Gaps = 7/222 (3%)
Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
D +++ F I F+ +L +LG K G+E + + + G+
Sbjct: 2 NDPVLIFFVVIAAFLSYRLYTLLGSKGGHEPTDAERERIGLPTGRPERD-------GQGT 54
Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
+++ L + + Y DFDP +F+ A+ +YE I+++F G++ +
Sbjct: 55 QEDEAVVAPRSDAKPLPAWAETVRADYADFDPDEFVTGAKAAYEMIIEAFANGRLDDVRA 114
Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
VD V + F ++ R + ++ ++ +LVGI+ +++ A + + +T++ I +
Sbjct: 115 YVDPDVMRTFEIAVRGRDNAQQTMEVTLVGIERAEVVEAKRQSAHLDVTVKFRSDQIRVT 174
Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ + +I DP VID WTF R + ++PNW L +T+
Sbjct: 175 RNAEGDVIEGDPNRIDLVIDRWTFSRPLSSTDPNWTLTATEA 216
>gi|83944953|ref|ZP_00957319.1| hypothetical protein OA2633_09999 [Oceanicaulis alexandrii
HTCC2633]
gi|83851735|gb|EAP89590.1| hypothetical protein OA2633_09999 [Oceanicaulis alexandrii
HTCC2633]
Length = 219
Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 5/222 (2%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
IL FA + F+ ++L VLGK +G + +R E + +
Sbjct: 3 ILQILFFAGLAVFLGVRLYMVLGKSSG-----RAAEDVEREQRERAEAAGMGAPPPSMRP 57
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
D + + I FDP +F AR +YE IV ++ +G A+E L
Sbjct: 58 QADETPFAAQFAGPAGEGLMQIAQHDPAFDPDEFRKGARAAYEMIVLAYAKGDREALEPL 117
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+ RV + ++ +++ R+ V + + I +I AS+ +N + I + S +
Sbjct: 118 LTERVKKAYDQAIAAREEKNWTVTTEIDRIKSAEISEASLNDNRAKVKIAFSVELASETR 177
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ ++ D V +IW+F R++ NPNW L K
Sbjct: 178 NAQGDVVEGDLTTLKTVDEIWSFERDVTSENPNWRLSGVKPA 219
>gi|326386373|ref|ZP_08207996.1| import inner membrane translocase, subunit Tim44 [Novosphingobium
nitrogenifigens DSM 19370]
gi|326209034|gb|EGD59828.1| import inner membrane translocase, subunit Tim44 [Novosphingobium
nitrogenifigens DSM 19370]
Length = 218
Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 48/218 (22%), Positives = 92/218 (42%), Gaps = 2/218 (0%)
Query: 16 FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
A I F+ L+L VLG++ + L + S+
Sbjct: 1 MAMIALFLGLRLYAVLGRRAEGSDEPLRRRVEQPDPQAALRAMPSKLPEKPAMTGRPSLP 60
Query: 76 ELFPIGTRLNK--VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
P +R I++ FD FL A+ +Y ++D+F+ G A+ +L +
Sbjct: 61 TAEPSAFDAGAETGIRAIIAADRRFDVALFLTGAKAAYGMVLDAFWRGDKDALAQLCERS 120
Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
VY+ F ++ RK + V + L+ +DD +I++A I +R V + + + +
Sbjct: 121 VYESFAAAIDARKQAGETVDARLIRVDDARIVSADFNAPVARIAVRFVADVATVTRNTEG 180
Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+++ + + D+WTF R++ +P+W L T G
Sbjct: 181 TVVAGSLDDAIESRDLWTFSRDLTSRDPDWQLDETDQG 218
>gi|149185516|ref|ZP_01863832.1| hypothetical protein ED21_20864 [Erythrobacter sp. SD-21]
gi|148830736|gb|EDL49171.1| hypothetical protein ED21_20864 [Erythrobacter sp. SD-21]
Length = 218
Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 58/222 (26%), Positives = 105/222 (47%), Gaps = 5/222 (2%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
+ I++ A I F+ L+L VLG+++ +E+ + ++ F D
Sbjct: 2 IYEIVILAAIAAFLGLRLYSVLGERSEHEEEPA-----RHRFDAPDAVPPAAERPAAPAR 56
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+ + + +R I S FD FL A+ +Y I+++F++G + L
Sbjct: 57 ESVRLRSVDNASSANENAIRAIASADPRFDLLAFLEGAKAAYGMILEAFWKGDKDTLRDL 116
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
D VY F+ ++ R + +++++ LV I+D I +A ++ T I++ V S +
Sbjct: 117 TDDDVYAGFSGAIDARDTAGESLENRLVRIEDATIHSAELDNRTARISVLFVSDIASLTR 176
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
DKD +I+ + + DIWTF RN+ +PNWVL T G
Sbjct: 177 DKDGNVIAGSLDDAVESRDIWTFTRNVDAMDPNWVLDETDQG 218
>gi|319406501|emb|CBI80142.1| Tim44 domain protein [Bartonella sp. 1-1C]
Length = 230
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 67/210 (31%), Positives = 118/210 (56%), Gaps = 4/210 (1%)
Query: 24 FLQLRGVLGKKTGNEKPFSGFFSGKYVFS----KRDERGIITLGKGKKKDNLDSINELFP 79
F+QLR VLGK+ G EKP +SG K D+ + +K + I+ + P
Sbjct: 18 FVQLRNVLGKRVGFEKPPFDSYSGYTKKPIEVEKNDKIVSLPDQSSSQKGDFSEIDAIAP 77
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
G++LN +R I F P+ F+N + YE I+ +F +G + +++ + S V++ F
Sbjct: 78 EGSKLNSGLRSIRQFDPSFSPQFFVNGVQIVYEIIMTAFAQGDRNRLKEHLSSDVFESFC 137
Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199
+++ R+ N + ++ + VGI ++ I A +++ +T+RI+ + ISA+Y++ I +
Sbjct: 138 EAIELREKNNERIQFTFVGISKIEFIAAEMQKEEALLTVRIISEMISATYNEQEECIEGN 197
Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
PE ++ DIWTF+RNI NPNW L +T+
Sbjct: 198 PEAIIEIRDIWTFIRNITSKNPNWKLFATE 227
>gi|262277816|ref|ZP_06055609.1| import inner membrane translocase subunit Tim44 [alpha
proteobacterium HIMB114]
gi|262224919|gb|EEY75378.1| import inner membrane translocase subunit Tim44 [alpha
proteobacterium HIMB114]
Length = 204
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 50/229 (21%), Positives = 96/229 (41%), Gaps = 29/229 (12%)
Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
+ + G I+L A + F+ L+LR LGK N P F+ + + I
Sbjct: 1 MSENFGYIDIILLAIMAGFILLRLRSTLGKGADNM-PMKARFTQAQSNEEFTKPIIE--- 56
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
+I T FD K F+ A +YE I+++F +G
Sbjct: 57 -------------------------DEIKQDTTKFDEKIFIKGAEAAYEIIINAFAKGDR 91
Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
A++ L+ +Y++F + R+S + + + S +GI + KI++ ++ + + V +
Sbjct: 92 KALKPLLTKDLYKNFEGVIKERESKKISSQMSFIGIKETKILDIDNKDTFYKVKTKFVSE 151
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
++ +I +PE V D+W F +++ ++P W L E
Sbjct: 152 IVNCLKSDKGEVIEGNPEEIKLVTDVWVFEKDLKNNDPTWYLTELSSEE 200
>gi|300024770|ref|YP_003757381.1| import inner membrane translocase subunit Tim44 [Hyphomicrobium
denitrificans ATCC 51888]
gi|299526591|gb|ADJ25060.1| import inner membrane translocase subunit Tim44 [Hyphomicrobium
denitrificans ATCC 51888]
Length = 251
Score = 148 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 59/250 (23%), Positives = 105/250 (42%), Gaps = 24/250 (9%)
Query: 6 MDSGDFLILLFAFI-TFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK 64
M LI L A I ++LR VLG +T ++ + + +
Sbjct: 1 MSGQFDLITLIALIVAVAAIIKLRSVLGHRTDEDEQRVERLRAREREASQRAGADAPSAD 60
Query: 65 GKKKDNLDS-------------------INELFPIGTRLNKVMRDIVSVYTDFDPKDFLN 105
D IN + + + + +FDP+ F+
Sbjct: 61 VITMPRRDRDAAPAAPAAEAAGPSAETRINAYPVSNPDVTAGLLQVAKLDPEFDPESFVT 120
Query: 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165
A +YE IV +F EG ++ L+ V+ F+ +++ R++ + + VGI I+
Sbjct: 121 GAGRAYEMIVSAFAEGNRRMLKDLLSKDVFDGFSSAIADREARGEVLDQQFVGIKKADIV 180
Query: 166 NASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP----SNP 221
+A ++ T +T+R + + ISA+ DK +I+ D + V DIW F R++ SNP
Sbjct: 181 DAEVKNGTAALTVRFISELISATRDKAGEVIAGDAQKIKDVTDIWIFSRDVSSAKALSNP 240
Query: 222 NWVLISTKLG 231
NW L++T+
Sbjct: 241 NWRLVATQAP 250
>gi|310817171|ref|YP_003965135.1| transporter, Tim44 family protein [Ketogulonicigenium vulgare Y25]
gi|308755906|gb|ADO43835.1| transporter, Tim44 family protein [Ketogulonicigenium vulgare Y25]
Length = 219
Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 97/205 (47%), Gaps = 10/205 (4%)
Query: 26 QLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLN 85
+LR VLG + G EKP + R + + G +D +D + P G+
Sbjct: 21 RLRSVLGSRDGFEKPIAQV----PPEEARKRPTLDVIEGGPDRDIVDHV----PEGSATA 72
Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145
++ + F +FL+ +R +YE I+ +F G + + + V+ F ++ R
Sbjct: 73 LIIGQMKKAEPSFSLSEFLSGSRGAYEMILMAFERGDIEPVRGFIAPEVFDAFAGVIADR 132
Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQFISASYDKDNLLISSDPEIF 203
++ V++ +GI D+ + +A+ + T + +R V + S D D ++ P++
Sbjct: 133 QARGLKVEAHFIGIRDVGLDDAAFDPATGEAELVVRFVAEMTSVVRDADGTVVEGAPDVA 192
Query: 204 GKVIDIWTFVRNIPPSNPNWVLIST 228
+ D+WTF R + S+PNW L++T
Sbjct: 193 KRQKDVWTFARKMGASDPNWTLVAT 217
>gi|319403587|emb|CBI77169.1| conserved hypothetical protein [Bartonella rochalimae ATCC
BAA-1498]
Length = 230
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 67/208 (32%), Positives = 116/208 (55%), Gaps = 4/208 (1%)
Query: 26 QLRGVLGKKTGNEKPFSGFFSGKYVFS----KRDERGIITLGKGKKKDNLDSINELFPIG 81
QLR VLGK+ G EKP +SG K D+ + +K + I+ + G
Sbjct: 20 QLRNVLGKRIGFEKPPFDSYSGYTKKPVEVEKNDKIVSLPDQSSSQKSDFSEIDAIASEG 79
Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
++LN +R I F P+ F+N + YE I+ +F +G + +++ + S V++ F ++
Sbjct: 80 SKLNSGLRSIRQFDPSFSPQFFVNGVQIVYEIIMTAFAQGDRNQLKEHLSSDVFESFCEA 139
Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201
+ R+ N + ++ + VGI ++ I A +++ ++T+RIV + ISA+Y++ I +PE
Sbjct: 140 IELREKNNERIQFTFVGISKIEFIAAEMQKEEAFLTVRIVSEIISATYNEQEECIEGNPE 199
Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTK 229
++ DIWTFVRNI NPNW L +T+
Sbjct: 200 AIIEIRDIWTFVRNITSKNPNWKLFATE 227
>gi|46204686|ref|ZP_00049618.2| COG4395: Uncharacterized protein conserved in bacteria
[Magnetospirillum magnetotacticum MS-1]
Length = 223
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 10/221 (4%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
DS D L+F + FV +LR VLG+KTG E+ + +
Sbjct: 3 DSFDVTTLIFLALAVFVIWRLRSVLGQKTGAERSPFRPVERNRTEPPAGRAEGDNVVRLP 62
Query: 67 KKD----------NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116
D + G+ + + + +V V FDP+ FL A+ +YE IV
Sbjct: 63 GADRAQAAAAVQTVTRDWRGIAEPGSAVARGLEQVVQVEPGFDPRTFLEGAKGAYEIIVT 122
Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
+F +G + L+ VY F+ +S R+ + V+++ + ID +I+ ++ I
Sbjct: 123 AFAQGDRKTLRPLLSREVYDGFDRVISERERRRETVETTFISIDKAEIVAIEVKNRAAQI 182
Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217
T+R + I+A+ D D +I + E +V D+WTF R +
Sbjct: 183 TVRFLSNLITATRDADGKVIDGNAETGVEVPDVWTFARTLG 223
>gi|254994672|ref|ZP_05276862.1| hypothetical protein AmarM_00445 [Anaplasma marginale str.
Mississippi]
Length = 217
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 4/221 (1%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
+ ++AF+ F+F +L G LGK + S + + + G I
Sbjct: 1 MVELAIYAFVAAFIFFRLYGSLGKASSVNFQPSAIYPEQAGGEQAASDGSINSQDIP--- 57
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+ S+ ++ V I F K F+ + ++EAIV + +G + L
Sbjct: 58 -VSSVVADCASVEQIASVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGNAEFLSSL 116
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+ ++ F + RKS + +V I K+ +A ++ N+ IT++ V + I+
Sbjct: 117 LSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVTEQINVVR 176
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
D ++ + D W F R+I S W L ST
Sbjct: 177 DAGGQVVDGSTSKVNTIEDTWKFERDITTSGRRWYLTSTSA 217
>gi|56416441|ref|YP_153515.1| hypothetical protein AM113 [Anaplasma marginale str. St. Maries]
gi|56387673|gb|AAV86260.1| hypothetical protein AM113 [Anaplasma marginale str. St. Maries]
Length = 217
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 4/221 (1%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
+ ++AF+ F+F +L G LGK + S + + + G I
Sbjct: 1 MVELAIYAFVAAFIFFRLYGSLGKASSVNFQPSAIYPEQAGGEQAASDGSINSQDIP--- 57
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+ S+ +++ V I F K F+ + ++EAIV + +G + L
Sbjct: 58 -VSSVVADCASVEQISSVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGNAEFLSSL 116
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+ ++ F + RKS + +V I K+ +A ++ N+ IT++ V + I+
Sbjct: 117 LSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVTEQINVVR 176
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
D ++ + D W F R+I S W L ST
Sbjct: 177 DAGGQVVDGSTSKVNTIEDTWKFERDITTSGRRWYLTSTSA 217
>gi|222474811|ref|YP_002563226.1| hypothetical protein AMF_080 [Anaplasma marginale str. Florida]
gi|255002781|ref|ZP_05277745.1| hypothetical protein AmarPR_00408 [Anaplasma marginale str. Puerto
Rico]
gi|222418947|gb|ACM48970.1| Conserved hypothetical protein [Anaplasma marginale str. Florida]
Length = 219
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 4/222 (1%)
Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
G + ++AF+ F+F +L G LGK + S + + + G I
Sbjct: 2 GMVELAIYAFVAAFIFFRLYGSLGKASSVNFQPSAIYPEQAGGEQAASDGSINSQDIP-- 59
Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
+ S+ +++ V I F K F+ + ++EAIV + +G +
Sbjct: 60 --VSSVVADCASVEQISSVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGNAEFLSS 117
Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
L+ ++ F + RKS + +V I K+ +A ++ N+ IT++ V + I+
Sbjct: 118 LLSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVTEQINVV 177
Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
D ++ + D W F R+I S W L ST
Sbjct: 178 RDAGGQVVDGSTSKVNTIEDTWKFARDITTSGRRWYLTSTSA 219
>gi|269959143|ref|YP_003328932.1| Tim44-like domain containing protein [Anaplasma centrale str.
Israel]
gi|269848974|gb|ACZ49618.1| Tim44-like domain containing protein [Anaplasma centrale str.
Israel]
Length = 217
Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 49/221 (22%), Positives = 94/221 (42%), Gaps = 4/221 (1%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
+ ++AF+ F+F +L G LGK + S + G+ + G +
Sbjct: 1 MVELAIYAFVAAFIFFRLYGSLGKASSVNFQPSAIYPGQVSGEQAASDGSVKPQDIP--- 57
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+DS+ +++ V I + DF K F+ + ++EAIV + +G + L
Sbjct: 58 -VDSVVADSAPVDQISSVFEAIKARNKDFSVKHFIEGSAAAFEAIVSALNQGNTELLSSL 116
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
++ +Y F + R+ + + +V I K+ NA +E N IT++ V + I+
Sbjct: 117 LNRHMYNSFVKEVERRRDAGRVHEDVVVSITSQKVTNAELEGNFATITVQFVTEQINVVR 176
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
D + ++ + D W F R++ + W L ST
Sbjct: 177 DVEGQVVDGSTSKVNVIEDTWKFERDVTAAGRRWYLASTSA 217
>gi|255003915|ref|ZP_05278716.1| hypothetical protein AmarV_00428 [Anaplasma marginale str.
Virginia]
Length = 217
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 4/221 (1%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
+ ++AF+ F+F +L G LGK + S + + + G I
Sbjct: 1 MVELAIYAFVAAFIFFRLYGSLGKASSVNFQPSAIYPEQAGGEQAASDGSINSQDIP--- 57
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+ S+ +++ V I F K F+ + ++EAIV + +G + L
Sbjct: 58 -VSSVVADCASVEQISSVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGNAEFLSSL 116
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+ ++ F + RKS + +V I K+ +A ++ N+ IT++ V + I+
Sbjct: 117 LSKDMHDSFVREIERRKSAGHTHEDVVVSIVSQKVTSAELKGNSAAITVQFVTEQINVVR 176
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
D ++ + D W F R+I S W L ST
Sbjct: 177 DAGGQVVDGSTSKVNTIEDTWKFARDITTSGRRWYLTSTSA 217
>gi|319405014|emb|CBI78623.1| Tim44 domain protein [Bartonella sp. AR 15-3]
Length = 230
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 66/206 (32%), Positives = 111/206 (53%), Gaps = 4/206 (1%)
Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFS----KRDERGIITLGKGKKKDNLDSINELFPIGTR 83
R VLGK+ G EKP +S D + KK+N IN + P +
Sbjct: 22 RNVLGKRIGFEKPPFDSYSKHSKKQIERETSDNIVSLPDQSSSKKNNFSEINTIAPEKSA 81
Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
LN +R I + F P+ F+N + YE I+ +F +G +++ + S V++ F +++
Sbjct: 82 LNSGLRAISLADSSFSPQFFINGVQIVYEIIMTAFAQGNRDQLKEHLSSDVFESFCEAIE 141
Query: 144 TRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203
R+ N + ++ + VGI+ ++ I A +++ ++T+RIV + ISA+Y++ I DPE
Sbjct: 142 QREKNNERIQFTFVGINKIEFIAAEMQKEEAFLTVRIVSEIISATYNEREEYIDGDPEAI 201
Query: 204 GKVIDIWTFVRNIPPSNPNWVLISTK 229
++ DIWTFVRN NPNW L +T+
Sbjct: 202 IEIRDIWTFVRNTTSKNPNWKLFATE 227
>gi|319898295|ref|YP_004158388.1| hypothetical protein BARCL_0116 [Bartonella clarridgeiae 73]
gi|319402259|emb|CBI75797.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
Length = 230
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 63/206 (30%), Positives = 110/206 (53%), Gaps = 4/206 (1%)
Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFS----KRDERGIITLGKGKKKDNLDSINELFPIGTR 83
R VLGK+ G EKP +SG D + +K + I+ + P G+
Sbjct: 22 RNVLGKRIGFEKPPFDSYSGYPKKQIEVETTDNIVSLPDQSSSQKSDFSEIDAIAPEGSE 81
Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
LN +R I F P+ F+N + YE I+ +F +G +++ + S V++ F ++
Sbjct: 82 LNVSLRTIRQFDPSFSPRFFMNGVQIVYEMIMTAFAQGDRVKLKEHLSSDVFESFCAAIE 141
Query: 144 TRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203
R+ N + ++ + VGI+ ++ I A +++ ++T+RIV + ISA+Y++ I +PE
Sbjct: 142 QREKNNERIQFTFVGINRIEFIAAEMQKKEAFLTVRIVSEMISATYNEQEECIDGNPEAI 201
Query: 204 GKVIDIWTFVRNIPPSNPNWVLISTK 229
++ DIWTFVRN +PNW L +T+
Sbjct: 202 IEIRDIWTFVRNTTSQSPNWKLFATE 227
>gi|258541896|ref|YP_003187329.1| mitochondrial import inner membrane translocase subunit Tim44
[Acetobacter pasteurianus IFO 3283-01]
gi|256632974|dbj|BAH98949.1| mitochondrial import inner membrane translocase subunit Tim44
[Acetobacter pasteurianus IFO 3283-01]
gi|256636031|dbj|BAI02000.1| mitochondrial import inner membrane translocase subunit Tim44
[Acetobacter pasteurianus IFO 3283-03]
gi|256639086|dbj|BAI05048.1| mitochondrial import inner membrane translocase subunit Tim44
[Acetobacter pasteurianus IFO 3283-07]
gi|256642140|dbj|BAI08095.1| mitochondrial import inner membrane translocase subunit Tim44
[Acetobacter pasteurianus IFO 3283-22]
gi|256645195|dbj|BAI11143.1| mitochondrial import inner membrane translocase subunit Tim44
[Acetobacter pasteurianus IFO 3283-26]
gi|256648250|dbj|BAI14191.1| mitochondrial import inner membrane translocase subunit Tim44
[Acetobacter pasteurianus IFO 3283-32]
gi|256651303|dbj|BAI17237.1| mitochondrial import inner membrane translocase subunit Tim44
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654294|dbj|BAI20221.1| mitochondrial import inner membrane translocase subunit Tim44
[Acetobacter pasteurianus IFO 3283-12]
Length = 242
Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 49/235 (20%), Positives = 100/235 (42%), Gaps = 16/235 (6%)
Query: 5 KMDSGD----FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60
+MD ++L A + F+ L+LR VLGK+ G + + R +
Sbjct: 16 QMDFSLGHFPVDLVLLALVAAFLVLRLRSVLGKRVGIQ-------PVQVKLQVRPDAAPR 68
Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
+ ++ + ++ GTR+ ++ DI F P+ FLN A+ ++ +V ++ +
Sbjct: 69 VVEGKPEQAETAAEFDIPAPGTRVGTLLADIRQKDPSFTPQQFLNGAQIAFAQVVGAYAQ 128
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT----VYI 176
G V ++ + V F ++ R + E+ ++ + I + I + I I
Sbjct: 129 GNVDVLKTYLTPAVLAAFEAGITARANAEETQRTDVKAIRSLAIEDVRISPMEAGTAAAI 188
Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+RIV IS +K+ ++ + + D+WTF R + + W L + +
Sbjct: 189 DVRIVSDQISLVLNKEGQPVTG-TDAVTEFSDLWTFERLLDVNGSTWRLAAARSA 242
>gi|329114333|ref|ZP_08243095.1| Import Inner Membrane Translocase Subunit [Acetobacter pomorum
DM001]
gi|326696409|gb|EGE48088.1| Import Inner Membrane Translocase Subunit [Acetobacter pomorum
DM001]
Length = 242
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 47/235 (20%), Positives = 102/235 (43%), Gaps = 16/235 (6%)
Query: 5 KMDSGD----FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60
+MD ++L A + F+ L+LR VLGK+ G + + R +
Sbjct: 16 QMDFSLGHFPVDLVLLALVAAFLVLRLRSVLGKRVGIQ-------PVQVQLQVRPDAAPR 68
Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
+ ++ + ++ GTR+ ++ DI F P+ FLN A+ ++ +V ++ +
Sbjct: 69 VVEGKPEQAEAAAEFDIPAPGTRVGTLLADIRQKDPSFTPQQFLNGAQTAFAQVVGAYAQ 128
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT----VYI 176
G ++ ++ + V+ F ++ R + E+ ++ + I + I + + I
Sbjct: 129 GNLNVLKTYLTPAVFSAFEAGITARTNAEETQRTDVKAIRSLAIEDVRLTPMEAGTAAAI 188
Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+RIV IS +K+ ++ + + D+WTF R + + W L + +
Sbjct: 189 DVRIVSDQISLVLNKEGQPVTG-TDAVTEFSDLWTFERLLDVNGSTWRLAAARSA 242
>gi|88607695|ref|YP_504724.1| Tim44-like domain-containing protein [Anaplasma phagocytophilum HZ]
gi|88598758|gb|ABD44228.1| Tim44-like domain protein [Anaplasma phagocytophilum HZ]
Length = 241
Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 42/221 (19%), Positives = 89/221 (40%), Gaps = 7/221 (3%)
Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
G + ++AF+ F+F +L LG+ + S F G ++ I L +
Sbjct: 26 GMVELAIYAFVAAFIFFRLYSSLGRAS------SINFQGACATPEKPGDDRIALDAKNDQ 79
Query: 69 DNLDSINELFPIG-TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
++ + ++ + + + DF ++F+ + ++E I+ + G +
Sbjct: 80 QDIPLTSVTEEEHFEEVSPGIEVMRARSMDFSLRNFMAGSAAAFEVIMKALNRGDTELLS 139
Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
L+ +Y+ F + R S + +V I KI A + + IT++ + + I+
Sbjct: 140 SLLSDDIYKSFEKEIMRRNSEGHIHEDVVVSIVSQKITAAKVIGDVAAITVKFLTEQINV 199
Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ +I+ V D WTF +N + W L +T
Sbjct: 200 VRNAAGDVIAGSTSKINVVEDFWTFEKNANSPSRKWYLSAT 240
>gi|73667391|ref|YP_303407.1| membrane translocase, subunit Tim44 [Ehrlichia canis str. Jake]
gi|72394532|gb|AAZ68809.1| membrane translocase, subunit Tim44 [Ehrlichia canis str. Jake]
Length = 212
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 10/221 (4%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
+ ++A + F+F +L LGK +G + + ++ +
Sbjct: 1 MVELAIYALLAAFIFFRLYNSLGKTSGLQ----------PNNHSQAISIVVEDTQEYDDA 50
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
++ + + ++ I +F K F++ + ++E I+ +F EG VH + L
Sbjct: 51 EIEIESVMDTCNKDEKSIINQIKKKDKEFSLKHFMDGSIKAFEIIIKAFNEGNVHILSML 110
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+D+ +Y F++ + RK + +V + KII + N YIT++ + + I+
Sbjct: 111 LDTNLYNSFSEEIENRKKLNHVYEDIIVSVTSHKIIKLDLSGNIAYITVKFITEQINFVK 170
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
DKD+ +I K+ D+WTF ++I SN W L + +
Sbjct: 171 DKDDNVIQGSTSKINKIEDVWTFRKDITLSNKKWYLNAIQS 211
>gi|162147851|ref|YP_001602312.1| transporter protein [Gluconacetobacter diazotrophicus PAl 5]
gi|161786428|emb|CAP56010.1| putative transporter protein [Gluconacetobacter diazotrophicus PAl
5]
Length = 228
Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats.
Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 20/238 (8%)
Query: 4 IKMDSGD----FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59
+ MD F ++LF + F+ L+LR +LG + G E +
Sbjct: 1 MVMDFSFSHFPFDLVLFGLVAAFLALRLRSILGTRVGVEPAPPPSAVPRPGP-------- 52
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ + + ++ TR+ +V+ I DF P FL ++ IV +F
Sbjct: 53 -VIEGRAEPPATLTDYDVPAPETRVGQVLAAIAQQERDFVPAQFLKGVEAAFRQIVLAFA 111
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN----TVY 175
G V + + + + + F ++ +R+ + + K+ + I + I++A+IEE
Sbjct: 112 AGDVAMLRERLTANAFSAFEAAIRSREQSGEIQKAEVRAIASLAIVDAAIEERDGATHAR 171
Query: 176 ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP--SNPNWVLISTKLG 231
I +RIV IS + DKD ++ + + D+WTF R + S W L +++
Sbjct: 172 IDVRIVSDQISLTSDKDGHPVAG-TDAVTEFSDLWTFERPLGVAISGAAWRLAASRSA 228
>gi|209542471|ref|YP_002274700.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530148|gb|ACI50085.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter
diazotrophicus PAl 5]
Length = 226
Score = 135 bits (338), Expect = 6e-30, Method: Composition-based stats.
Identities = 53/236 (22%), Positives = 100/236 (42%), Gaps = 20/236 (8%)
Query: 6 MDSGD----FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61
MD F ++LF + F+ L+LR +LG + G E +
Sbjct: 1 MDFSFSHFPFDLVLFGLVAAFLALRLRSILGTRVGVEPAPPPSAVPRPGP---------V 51
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
+ + + ++ TR+ +V+ I DF P FL ++ IV +F G
Sbjct: 52 IEGRAEPPATLTDYDVPAPETRVGQVLAAIAQQERDFVPAQFLKGVEAAFRQIVLAFAAG 111
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN----TVYIT 177
V + + + + + F ++ +R+ + + K+ + I + I++A+IEE I
Sbjct: 112 DVAMLRERLTANAFSAFEAAIRSREQSGEIQKAEVRAIASLAIVDAAIEERDGATHARID 171
Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP--SNPNWVLISTKLG 231
+RIV IS + DKD ++ + + D+WTF R + S W L +++
Sbjct: 172 VRIVSDQISLTSDKDGHPVAG-TDAVTEFSDLWTFERPLGVAISGAAWRLAASRSA 226
>gi|302381470|ref|YP_003817293.1| import inner membrane translocase subunit Tim44 [Brevundimonas
subvibrioides ATCC 15264]
gi|302192098|gb|ADK99669.1| import inner membrane translocase subunit Tim44 [Brevundimonas
subvibrioides ATCC 15264]
Length = 214
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 50/230 (21%), Positives = 83/230 (36%), Gaps = 22/230 (9%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M S I++FA I FV QL VLGKK G + + D
Sbjct: 1 MPSQFL-IVIFAVIAAFVLFQLYNVLGKKVGRQPQDDAKAPPALPATGPDAP-------- 51
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
+ L + + FDP F++ AR +YE IV + G A
Sbjct: 52 ---------LRTPGVDATLLAAAASLRARDPAFDPAKFIDGARQAYETIVRGYAAGDRAA 102
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
++ L+ V F ++ R++ + + + + AS E + +R + +
Sbjct: 103 LKPLLTPAVLDSFETGIAARETRGETEQVEFLHPPRADLELASAEGDRAVAKVRFLAELR 162
Query: 186 SASYDKDNLLISSDPEIF----GKVIDIWTFVRNIPPSNPNWVLISTKLG 231
S + P + + WTF R++ S+PNWVL +
Sbjct: 163 SKIMPPADEATPGAPAEPRIEERRTAEHWTFERSLGASDPNWVLARVEPA 212
>gi|57239470|ref|YP_180606.1| hypothetical protein Erum7440 [Ehrlichia ruminantium str.
Welgevonden]
gi|58579448|ref|YP_197660.1| hypothetical protein ERWE_CDS_07840 [Ehrlichia ruminantium str.
Welgevonden]
gi|57161549|emb|CAH58476.1| conserved hypothetical protein [Ehrlichia ruminantium str.
Welgevonden]
gi|58418074|emb|CAI27278.1| Hypothetical protein ERWE_CDS_07840 [Ehrlichia ruminantium str.
Welgevonden]
Length = 213
Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 42/223 (18%), Positives = 94/223 (42%), Gaps = 11/223 (4%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
+ ++AF+ F+F +L LG+ +G + + +I
Sbjct: 1 MVELAIYAFVAAFIFFRLYNSLGRTSGLQ----------PNNHSQPVSILIQEDNNHDYT 50
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
++D + + +M I +F K F++ + +++ I+ +F EG + L
Sbjct: 51 DIDIESVMESCDDNDKSIMSTIKRKDREFSLKYFMDGSMKAFDIIIKAFNEGNTQILCSL 110
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+D +Y F + RK+ + + +V I KI + N +IT++ + + I+
Sbjct: 111 LDKDLYNSFLTEIEYRKNLGQVYEDVIVSIIHHKITKLKLSGNIAHITVKFISEQINFVK 170
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIP-PSNPNWVLISTKLG 231
D++ ++ K+ D+WTF +++ ++ W L S +
Sbjct: 171 DQEGNILQGSTSKINKIEDVWTFKKDMSLLTSKKWYLSSIQPV 213
>gi|58617502|ref|YP_196701.1| hypothetical protein ERGA_CDS_07750 [Ehrlichia ruminantium str.
Gardel]
gi|58417114|emb|CAI28227.1| Hypothetical protein ERGA_CDS_07750 [Ehrlichia ruminantium str.
Gardel]
Length = 213
Score = 131 bits (328), Expect = 8e-29, Method: Composition-based stats.
Identities = 42/223 (18%), Positives = 95/223 (42%), Gaps = 11/223 (4%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
+ ++AF+ F+F +L LG+ +G + + +I
Sbjct: 1 MVELAIYAFVAAFIFFRLYNSLGRTSGLQ----------PNNHSQPVSILIQEDNNHDYT 50
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
++D + + +M I +F K F++ + +++ I+ +F EG + + L
Sbjct: 51 DIDIESVMESCDDNDQSIMNTIKRKDREFSLKYFMDGSMKAFDIIIKAFNEGNIQILCSL 110
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+D +Y F + RK+ + + +V I KI + N +IT++ + + I+
Sbjct: 111 LDKDLYNSFLTEIEYRKNLGQVYEDVIVSIIYHKITKLKLSGNIAHITVKFISEQINFVK 170
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIP-PSNPNWVLISTKLG 231
D++ ++ K+ D+WTF +++ ++ W L S +
Sbjct: 171 DQEGNILQGSTSKINKIEDVWTFKKDMSLLTSKKWYLSSIQPV 213
>gi|296115110|ref|ZP_06833751.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter
hansenii ATCC 23769]
gi|295978211|gb|EFG84948.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter
hansenii ATCC 23769]
Length = 227
Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats.
Identities = 44/227 (19%), Positives = 97/227 (42%), Gaps = 15/227 (6%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
++ + F+ L+LRG+LGK+ G E + + +
Sbjct: 10 LDLVFLGLVAVFLVLRLRGILGKRVGAEPAAR--------TMQPTPTPAPVIEGKPEPVA 61
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+ ++ TR+ +V+ I + F P F+ + +++ IV ++ G + + + +
Sbjct: 62 PATTYDIPTPDTRVGQVLSAIAARQQGFTPDGFIRQVEDAFRQIVQAYAVGDIETLRQHL 121
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE----NTVYITIRIVGQFIS 186
+ F ++ +R+ + ++S + I DM II+A + I +RIV +S
Sbjct: 122 TESTFTAFEAAIVSRQQAHETMRSEIRDITDMAIIDAELSPDVSVPYARIEVRIVSDQVS 181
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN--WVLISTKLG 231
+ D++ +S + + D+WTF R + + P W L +++
Sbjct: 182 VTLDQNGQPVSG-VDAVTEFSDLWTFERILGAATPGAQWRLGASRSA 227
>gi|117923796|ref|YP_864413.1| import inner membrane translocase, subunit Tim44 [Magnetococcus sp.
MC-1]
gi|117607552|gb|ABK43007.1| import inner membrane translocase, subunit Tim44 [Magnetococcus sp.
MC-1]
Length = 331
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 33/216 (15%), Positives = 82/216 (37%), Gaps = 3/216 (1%)
Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN---E 76
VF ++ +G + ++ G Y ++ + + E
Sbjct: 116 AAGVFFLVKRFMGTRPPADEAAYARSHGAYRPQPQEMDQPMQREMHMPQGLPMGSGSDVE 175
Query: 77 LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136
F + + +++ ++FD F++ A+ +E + S+ + ++ L+ ++ +
Sbjct: 176 DFSAQDERQQTLDRLLAEDSNFDEFTFIDGAKRCFEMLQTSWSTFDMTTLQGLLTPQMME 235
Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196
+ + ++N + V + ++ A E+ Y+T+R + D ++
Sbjct: 236 EVENHARQLQANGQRDVVKNVHFSEAALVEAWSEQGQDYLTVRFDVSLVEYVEDASGQVV 295
Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
S D +V + W F R NPNW L + + +
Sbjct: 296 SGDANHPQQVQEFWVFTRAQGARNPNWQLSAIQQAQ 331
>gi|330993443|ref|ZP_08317378.1| putative transporter protein [Gluconacetobacter sp. SXCC-1]
gi|329759473|gb|EGG75982.1| putative transporter protein [Gluconacetobacter sp. SXCC-1]
Length = 258
Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 40/238 (16%), Positives = 92/238 (38%), Gaps = 20/238 (8%)
Query: 5 KMDS----GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60
M+ +++ + F+ L+LR +LG++ G E P + + E+ +
Sbjct: 30 GMNFISGHFPLDLVVLGLVAVFLVLRLRSILGRRVGAE-PAVRPMAAQPAAQPMVEKPVE 88
Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
E+ TR+ V+ I ++ F P++F ++ IV ++
Sbjct: 89 PPPPA-------ITYEIPTPDTRVGGVLARIAALQPGFTPQEFARGTETAFRQIVGAYAA 141
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN-----VKSSLVGIDDMKIINASIEENTVY 175
G + + + + + + F ++ +R+ + + + I ++ A+
Sbjct: 142 GDLDVLRERLTAATFGAFEAAIQSRQQAGEVLRSEIRDITDIAIIGAEVDEAAGPSPLAR 201
Query: 176 ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVR--NIPPSNPNWVLISTKLG 231
I +RIV IS + D ++ + + D+WTF R + W L +++
Sbjct: 202 IEVRIVSDQISLTVDSSGHPVAG-VDAVTEFSDLWTFERLLGVNAPGAGWRLGASRSA 258
>gi|114799709|ref|YP_758741.1| Tim44 domain-containing protein [Hyphomonas neptunium ATCC 15444]
gi|114739883|gb|ABI78008.1| Tim44 domain protein [Hyphomonas neptunium ATCC 15444]
Length = 204
Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 23/226 (10%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M + +L+ A + FV +L LG + G+E P KR G + +
Sbjct: 1 MSNPLIEVLILAAVALFVLWRLYSALG-RGGDEGPVQR---PAPTPEKRPTPGEMPAPQP 56
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
++ +N I G + DI + F ++F+ A+ +Y+ IV ++ G +A
Sbjct: 57 RRIENERPIFTGPAAG-----ALEDIYNADRSFSTEEFMRGAKAAYQLIVGAYARGDRNA 111
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
+ L+D VY+ ++ +++ R + L+ I +I A ++ + + +R +
Sbjct: 112 LRPLLDDDVYEAWDAAIAERDATGARA-FELLRIKKAEIDRAELDGSMARVMVRYEAEL- 169
Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
D E V +IWTF+R++ S+PNW+L ++
Sbjct: 170 ------------GDGETTRIVREIWTFMRDVSSSDPNWLLDDVEVA 203
>gi|225677153|ref|ZP_03788152.1| hypothetical protein WUni_006480 [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|225590820|gb|EEH12048.1| hypothetical protein WUni_006480 [Wolbachia endosymbiont of
Muscidifurax uniraptor]
Length = 216
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 43/219 (19%), Positives = 91/219 (41%), Gaps = 16/219 (7%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
++++A + F+F +L LG+ + K+ + +
Sbjct: 1 MIELVIYALLAAFIFSRLYNSLGR-------------SANLNLKKLTNVLDVSRSREDVV 47
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+ + I+ DF F+ + ++E I+ F +G + ++ L
Sbjct: 48 ENIEGYIDSNDENSIKVTYKQILKKNKDFSISHFIEGSSIAFELIIKCFNQGNLSQLKPL 107
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+D +Y +F + + RK +S +V I KI+ + +N V+I + + + I+
Sbjct: 108 LDKDLYDNFAEKIKHRKE---VHESIIVSIVSQKILEIKLVKNAVFIAVYFLSEQINFVK 164
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ +IS KV D+W F +N+ S+P+W+L+S
Sbjct: 165 NNKGDIISGSTSTINKVEDVWQFKKNVNSSDPSWLLVSI 203
>gi|42520013|ref|NP_965928.1| hypothetical protein WD0107 [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|42409750|gb|AAS13862.1| conserved domain protein [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 216
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 43/219 (19%), Positives = 92/219 (42%), Gaps = 16/219 (7%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
++++A + F+F +L LG+ + K+ + +
Sbjct: 1 MIELVIYALLAAFIFSRLYNSLGR-------------SANLNLKKLTNVLDVSRSREDVV 47
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+ + I+ DF F+ + ++E I+ F +G + ++ L
Sbjct: 48 ENIEGYIDSNDENSIKVTYKQILKKNKDFSISHFIEGSSIAFELIIKCFNQGNLSQLKPL 107
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+D +Y +F + + RK +S +V I KI+ + +N V+I + + + I+
Sbjct: 108 LDKDLYDNFAEKIKHRKE---VHESIIVSIVSQKILEIKLVKNAVFIAVYFLSEQINFVK 164
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ + +IS KV D+W F +N+ S+P+W+L+S
Sbjct: 165 NNEGDIISGSTSTINKVEDVWQFKKNVNSSDPSWLLVSI 203
>gi|329891166|ref|ZP_08269509.1| tim44-like domain protein [Brevundimonas diminuta ATCC 11568]
gi|328846467|gb|EGF96031.1| tim44-like domain protein [Brevundimonas diminuta ATCC 11568]
Length = 205
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 47/221 (21%), Positives = 82/221 (37%), Gaps = 20/221 (9%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
F I++FA I + QL VLGKK G ++ E +
Sbjct: 3 FQIVIFAVIAAVLLFQLYNVLGKKVG----------------RQPEDNPKPVPVPAAPAG 46
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+ L + + + +FDP FL AR +YE IV ++ +G A+ L+
Sbjct: 47 APEAARGPVVDPALTAAIAGLKTRDPNFDPHRFLEGARQAYETIVRAYAKGDRDALRPLL 106
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
+V F ++ R++ LV + A+ E + +R + + +
Sbjct: 107 TDKVMGSFEAGIAAREARGDAESVELVHAPRADLELATTEGDRALAKVRFLAEVRGSLTP 166
Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ + +IWTF R + S+PNW L +
Sbjct: 167 SGGETV----TEERRTAEIWTFERRLGASDPNWALARVEPA 203
>gi|330813377|ref|YP_004357616.1| putative translocase transmembrane protein with Tim44 Pfam domain
[Candidatus Pelagibacter sp. IMCC9063]
gi|327486472|gb|AEA80877.1| putative translocase transmembrane protein with Tim44 Pfam domain
[Candidatus Pelagibacter sp. IMCC9063]
Length = 193
Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 50/219 (22%), Positives = 86/219 (39%), Gaps = 35/219 (15%)
Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINEL 77
I F+FL+LR VLGK D I K +D+ + E+
Sbjct: 1 MIAGFIFLRLRNVLGK-------------------GADNSPIKPNFANKSRDDFSFVKEV 41
Query: 78 FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD 137
+ FD F A +YE I+++F +G +++ L+ ++Y D
Sbjct: 42 RTESNK------------PVFDEASFKKGAEYAYEMIINAFAKGDKQSLKPLLTKKLYLD 89
Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197
F + R + + +GI+ M I S +T R + Q I+ ++ ++
Sbjct: 90 FEKIIDDRNEKKLTSSLTFIGIEKMSIDKVSNVNTKYKVTARFISQIINCLKNEKGEVVE 149
Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWVL----ISTKLGE 232
D E D+W+F R++ S+P W L T+ E
Sbjct: 150 GDAEKTKTTTDVWSFERDLKDSDPTWYLTELSAETENSE 188
>gi|4098584|gb|AAD00329.1| unknown [Rhodobacter capsulatus]
Length = 183
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 45/182 (24%), Positives = 85/182 (46%), Gaps = 6/182 (3%)
Query: 49 YVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR 108
R + G D +D + P G+ + + V F+ FL ++
Sbjct: 4 EAPGPRAADRFEVIEGGPDHDIIDHV----PEGSDAAVALAQMKRVEPTFNVGAFLQGSK 59
Query: 109 NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS 168
+YE I+ +F G + A+ + + V + F +++ R+ V++S +G+ ++ + AS
Sbjct: 60 VAYEMILMAFERGDLSAVRRFLAPEVLEAFETAVADRQRQGLTVEASFLGLRELVLTEAS 119
Query: 169 IEE--NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226
E +T+R G+ IS + D + ++ DP+ K D WTF R + S+PNW L+
Sbjct: 120 FNESSREAEVTVRFGGELISVARDANGQIVEGDPKAPRKQRDSWTFARVMGSSDPNWQLV 179
Query: 227 ST 228
+T
Sbjct: 180 AT 181
>gi|68171233|ref|ZP_00544637.1| Mitochondrial import inner membrane translocase, subunit Tim44
[Ehrlichia chaffeensis str. Sapulpa]
gi|88658281|ref|YP_507053.1| tim44-like domain-containing protein [Ehrlichia chaffeensis str.
Arkansas]
gi|67999353|gb|EAM85998.1| Mitochondrial import inner membrane translocase, subunit Tim44
[Ehrlichia chaffeensis str. Sapulpa]
gi|88599738|gb|ABD45207.1| tim44-like domain protein [Ehrlichia chaffeensis str. Arkansas]
Length = 212
Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 48/222 (21%), Positives = 99/222 (44%), Gaps = 10/222 (4%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
+ ++AF+ F+F +L LGK +G + + I+ +
Sbjct: 1 MVELAIYAFLAAFIFFRLYHSLGKTSGLQ----------SNSHSQTISIIMEDTQEHDTA 50
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
++D + + ++ I +F + F++ + ++E I+ +F EG +H + L
Sbjct: 51 DIDIDSVMEICNENDKSIINHIKKKDKEFSLRHFMDGSIKAFEIIIKAFNEGNIHILSML 110
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+D+ +Y F + + RK+ + + +V I KI S+ N YIT++ + + I+
Sbjct: 111 LDTNLYNSFVEEIENRKALGQLYEDIIVSITSHKITKLSLSGNIAYITVKFISEQINFVK 170
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
DKD+ ++ K+ D WTF ++ SN W L + +
Sbjct: 171 DKDDNILQGSTSKINKIEDTWTFRKDTTLSNKKWYLSTIQSV 212
>gi|197103473|ref|YP_002128850.1| hypothetical protein PHZ_c0007 [Phenylobacterium zucineum HLK1]
gi|196476893|gb|ACG76421.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
Length = 205
Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 41/225 (18%), Positives = 84/225 (37%), Gaps = 23/225 (10%)
Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
+++FA + V QL VLG++ G + + +R G
Sbjct: 2 QVLELIIFAGLAAIVLYQLYSVLGRRVGRQPEDQAAAEPAQGSVRAVDRMAEPADDG--- 58
Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
+ + ++ FD FL A+ +YE IV +F +G ++
Sbjct: 59 --------------VALTGLAAVKALDPSFDVGHFLGGAKQAYEMIVRAFADGDRATLKN 104
Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE-ENTVYITIRIVGQFISA 187
L+ +V F ++ R++ + + A + + +T+R + +F S
Sbjct: 105 LLAPQVLASFEAAIDQREAEGRTESVEFFHPPRADLEKADVTGADLGRVTVRFLAEFRSR 164
Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ + + + ++WTF RN+ +PNW+L+ E
Sbjct: 165 TKGPEGEAVDD-----RRTAELWTFERNLKSRDPNWMLVHVDAAE 204
>gi|58696732|ref|ZP_00372276.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila
simulans]
gi|58698125|ref|ZP_00373048.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila
ananassae]
gi|225629991|ref|YP_002726782.1| hypothetical protein WRi_001450 [Wolbachia sp. wRi]
gi|58535371|gb|EAL59447.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila
ananassae]
gi|58537084|gb|EAL60206.1| Tim44-like domain family [Wolbachia endosymbiont of Drosophila
simulans]
gi|225591972|gb|ACN94991.1| hypothetical protein WRi_001450 [Wolbachia sp. wRi]
Length = 216
Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats.
Identities = 43/219 (19%), Positives = 91/219 (41%), Gaps = 16/219 (7%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
++++A + F+F +L LG+ + K+ + +
Sbjct: 1 MIELVIYALLAAFIFSRLYNSLGR-------------SANLNLKKLTSVLDVSRSREDVV 47
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+ I+ DF F+ + ++E I+ F +G + ++ L
Sbjct: 48 ENIEGYIDSNDENSIKVTYEQILKKNKDFSISHFIEGSSIAFELIIKYFNQGNLSQLKPL 107
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+D +Y +F + + RK +S +V I KI+ + +N V+I + + + I+
Sbjct: 108 LDKDLYDNFAEKIKHRKE---VHESIIVSIVSQKILEIKLVKNVVFIAVYFLSEQINFVK 164
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ + +IS KV D+W F +N+ S+P+W+L+S
Sbjct: 165 NNEGDIISGSTSTINKVEDVWQFKKNVNSSDPSWLLVSI 203
>gi|254417984|ref|ZP_05031708.1| Tim44-like domain superfamily [Brevundimonas sp. BAL3]
gi|196184161|gb|EDX79137.1| Tim44-like domain superfamily [Brevundimonas sp. BAL3]
Length = 213
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 44/225 (19%), Positives = 81/225 (36%), Gaps = 22/225 (9%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
F I++FA I V QL VLGK+ G + S + L
Sbjct: 5 FQIVIFAVIAAIVLFQLYNVLGKRVGRQPQEDAKALPSSPTSTAEASKTPAL-------- 56
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+ + + FDP F+ AR +YE IV + G A+ L+
Sbjct: 57 ----------DAATLASIAGLKARDPAFDPNRFVEGARQAYETIVRGYAAGDRAALTPLL 106
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
V F+ ++ R++ + + + A+++ + +R + + S
Sbjct: 107 TPNVMASFDAGIAARETRGETETVEFLFPPRADLEGATVQGDKAVAKVRFLAELRSRVTK 166
Query: 191 KDNLL---ISSDP-EIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
++ +P + + WTF R + ++PNWVL +
Sbjct: 167 ASGDTADSVTGEPLVEERRTAEHWTFERTLGAADPNWVLARVEPA 211
>gi|58584799|ref|YP_198372.1| hypothetical protein Wbm0542 [Wolbachia endosymbiont strain TRS of
Brugia malayi]
gi|58419115|gb|AAW71130.1| Uncharacterized conserved protein related to eukaryotic translocase
of inner mitochondrial membrane [Wolbachia endosymbiont
strain TRS of Brugia malayi]
Length = 218
Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 46/219 (21%), Positives = 88/219 (40%), Gaps = 16/219 (7%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
++++A + FVF +L LG+ T + K+ + +
Sbjct: 1 MIELVIYALLAAFVFSRLYNSLGRST-------------SLNLKKLTSVLDISQVREDVV 47
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+ I+ DF F+ + +E I+ F +G + ++ L
Sbjct: 48 ENIEDYIDSNDKDPIKATYEQILQKNKDFSISHFMEGSGVVFELIIKYFNQGNLSQLKPL 107
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+D +Y +F + RK +S +V I KI+ + +N V+I + + + I+
Sbjct: 108 LDKDLYNNFAGKIKQRKE---IYESIIVSIVSQKILEIKLVKNVVFIAVYFLSEQINFVK 164
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ +IS KV D+W F +N+ SNP+W+L S
Sbjct: 165 NDKGDVISGSTSTINKVEDVWQFKKNVTSSNPSWLLTSI 203
>gi|190571472|ref|YP_001975830.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213018875|ref|ZP_03334683.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|190357744|emb|CAQ55195.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995826|gb|EEB56466.1| Tim44-like domain protein [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 219
Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats.
Identities = 41/219 (18%), Positives = 89/219 (40%), Gaps = 16/219 (7%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
++++A + F+F +L LG+ + K+ + +
Sbjct: 1 MIELVIYALLAAFIFSRLYNSLGR-------------SASLNLKKLTGVLDVSQSKEDVV 47
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+ + I+ +F +F+ + ++E I+ F +G + ++ L
Sbjct: 48 ENIEDYIYSNDKSSIETTYEQILQKNKEFSISNFIEGSSIAFELIIKYFNQGNLPQLKSL 107
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+D +Y F D + RK +S +V I KI+ + +N ++I + + + I+
Sbjct: 108 LDKDLYNSFVDKIKHRKE---THESIIVSIVSQKILEIKLVKNVIFIAVYFLSEQINFVK 164
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ + + S KV D+W F +NI S+ W+L+S
Sbjct: 165 NNEGNITSGSMSTINKVEDVWQFKKNINSSDLTWLLVSI 203
>gi|58040316|ref|YP_192280.1| putative translocase transmembrane protein [Gluconobacter oxydans
621H]
gi|58002730|gb|AAW61624.1| Putative translocase transmembrane protein [Gluconobacter oxydans
621H]
Length = 265
Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats.
Identities = 51/244 (20%), Positives = 98/244 (40%), Gaps = 25/244 (10%)
Query: 12 LILLFAFITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
+++ + + ++L VLG++ G E+P +GF G + D
Sbjct: 23 DLVVLFVLAVALGVRLYRVLGRRVGMQGVRQERPGAGFGPGAQKGAAPDAARPSIPPPLP 82
Query: 67 --------------KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
+ D E+ TR+ V+ +I SV+ F P FL EA ++
Sbjct: 83 GQVAGKPGAAPGVFDQAVPDVAYEIPAPATRVGTVLGEIGSVFPGFSPDGFLKEAEGTFR 142
Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL-----VGIDDMKIINA 167
+V +F G A+EKL+ F+ ++ R + +S L + I D +++A
Sbjct: 143 QVVPAFAVGDRTALEKLLTPASMDSFSAAIDARVQAGETQRSDLRGIESLSILDAMLVSA 202
Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
I ++IV + ++ D++ + E + D+W F R S+ W L +
Sbjct: 203 EDGTRVGRIEVKIVSRQVNILTDREGEPVVG-TEAVTEFHDLWLFERVAGQSDARWRLAA 261
Query: 228 TKLG 231
++
Sbjct: 262 SRPA 265
>gi|114571519|ref|YP_758199.1| import inner membrane translocase Tim44 [Maricaulis maris MCS10]
gi|114341981|gb|ABI67261.1| import inner membrane translocase, subunit Tim44 [Maricaulis maris
MCS10]
Length = 206
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 49/217 (22%), Positives = 87/217 (40%), Gaps = 17/217 (7%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
D L+ F +L VLG++ G+ + + + + +G
Sbjct: 2 DIWTLIGGVAAIFFAYRLYTVLGRREGHMEAPAPRTKPEAASDSDKAPSLRPAFEGPAAA 61
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
L++I V T FDP A+N+Y IV++F G +E L
Sbjct: 62 GLEAIAA-----------------VDTRFDPTAVKEGAQNAYVMIVEAFAAGDRKVLEPL 104
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+ V + ++ R + V++ + + D+ II A +NT I +R V + + +
Sbjct: 105 LAPNVLDRYTTAIDQRADRGETVRTEVERLKDVDIIEAGHADNTARIKVRFVAEIATETR 164
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226
D D+ +++ D V + W F R +PNWVL
Sbjct: 165 DSDDAVVAGDIGRLSTVTEDWVFERRTNKGDPNWVLT 201
>gi|295691579|ref|YP_003595272.1| import inner membrane translocase subunit Tim44 [Caulobacter segnis
ATCC 21756]
gi|295433482|gb|ADG12654.1| import inner membrane translocase subunit Tim44 [Caulobacter segnis
ATCC 21756]
Length = 198
Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 43/223 (19%), Positives = 89/223 (39%), Gaps = 26/223 (11%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
IL A + V QL LG++ G + ++ + G
Sbjct: 1 MLQILFLAAVAAIVLYQLYATLGRRVGRQ---------------PEDTPVKAGAGGPAPV 45
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
D L + + + + DFDP F+ AR +YE IV ++ +G ++ L
Sbjct: 46 TTDPHPVLRS------EGLAALKARQPDFDPAKFMTGARAAYEQIVTAYADGDRETLKPL 99
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+ V +F +++ R++ ++ K + + + + + +T +RI+ + + +
Sbjct: 100 LAPEVMANFEQAMAAREAAGRSEKVEFLTSPRLDLESVDLVGDTAKAVVRILAEVRTRTK 159
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
D+ + + ++WTF R + +NPNW+L E
Sbjct: 160 DERGEGVDD-----RRTAELWTFEREVRNANPNWLLSFVAAAE 197
>gi|254295483|ref|YP_003061506.1| import inner membrane translocase subunit Tim44 [Hirschia baltica
ATCC 49814]
gi|254044014|gb|ACT60809.1| import inner membrane translocase subunit Tim44 [Hirschia baltica
ATCC 49814]
Length = 200
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 26/223 (11%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
D +++FA + FFV +L VLG KTG E P S + D
Sbjct: 2 DIELIIFAAVAFFVLYRLYSVLGTKTGAEPPPSVVREATQKRKNSEG-----------SD 50
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+ M +I + + F P DF +++ +YE IV++F EG + L
Sbjct: 51 ESNVTPFRPSFTGPGASAMEEISQIDSTFSPSDFTRKSKKAYEMIVEAFAEGDKETLSNL 110
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYITIRIVGQFISAS 188
+ VY+ + ++ R+ N L+ + +I +A ++ + +++ Q
Sbjct: 111 LVDDVYEAYVSAIDEREQNN-TEPLRLMRLKSAEIADAELLDGDIGQVSVSFEAQLS--- 166
Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
D E +IWTF R++ SNP W+L
Sbjct: 167 ----------DGENLRTAKEIWTFERSLKSSNPAWLLGGVSEA 199
>gi|16127971|ref|NP_422535.1| hypothetical protein CC_3741 [Caulobacter crescentus CB15]
gi|221236793|ref|YP_002519230.1| transporter [Caulobacter crescentus NA1000]
gi|13425513|gb|AAK25703.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220965966|gb|ACL97322.1| transporter [Caulobacter crescentus NA1000]
Length = 234
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 29/223 (13%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
F IL A + V QL LG++ G ++ E +T G
Sbjct: 40 VFQILFLAAVAALVLYQLYSTLGRRVG----------------RQPEDAAVTAMPGAAPA 83
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+D + + + + + + DFDP FL R +YE IV ++ EG + L
Sbjct: 84 PVDPVLQ--------AEGVATLRARQPDFDPARFLMGVRAAYEQIVKAYAEGDRETLTPL 135
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+ V +F ++ R++ + K + + + + +T +RI+ + + +
Sbjct: 136 LAPDVMDNFERAMVARETAGRTEKVEFLTPPRVDLERVDVVGDTAKAVVRILAEVRTRTK 195
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
D+ + + ++WTF R + ++PNW L E
Sbjct: 196 DERGEGVDD-----RRTAELWTFEREVKSTDPNWHLTFVAAAE 233
>gi|167648993|ref|YP_001686656.1| import inner membrane translocase subunit Tim44 [Caulobacter sp.
K31]
gi|167351423|gb|ABZ74158.1| import inner membrane translocase subunit Tim44 [Caulobacter sp.
K31]
Length = 199
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 40/223 (17%), Positives = 83/223 (37%), Gaps = 25/223 (11%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
F ++ A + + QL LG++ G +
Sbjct: 1 MFEWIILAALAAVILYQLYATLGRRVGRQ--------------------PEDAPAAVPAS 40
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+ + + + + DFD FL+ AR +YE IV +F G ++ L
Sbjct: 41 VAPRDVKTLEVPGEALSGLAALRARQADFDIGHFLSGARQAYEMIVKAFAAGDRETLKPL 100
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+ + V +F +++ R++ + K+ + + + +E + +RI+ + + S
Sbjct: 101 LAADVMANFEAAIADREAAGRTEKAEFLATPRTDLDSIKVEGDVARAVVRILAEVRTRST 160
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ + D+WTF R++ NPNW L+ + E
Sbjct: 161 SAAGDAVDD-----RRTADLWTFERDLKSRNPNWTLVRVDVAE 198
>gi|322420322|ref|YP_004199545.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M18]
gi|320126709|gb|ADW14269.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M18]
Length = 322
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 33/220 (15%), Positives = 76/220 (34%), Gaps = 13/220 (5%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
F I+L A I ++ R V +++ E P +G G + + ++
Sbjct: 115 FDIVLLAGI-CYLIY--RMVKKRRS--ETPLQSVSTGYGSQ------GYDSPQQYQENSI 163
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
S P + + + + FD F + +++ I + + A+ L+
Sbjct: 164 PASYRVDEPPQADIYTGISHLRQMDPGFDEARFKDLVMDNFFRIQGGWMNRDLQALSALL 223
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
+ F + + + + + + + ++ E Y+T+ I + + D
Sbjct: 224 TPEMQGVFREDIERLLRDGRVNRLENIAVRSVEFSEVWQEAGQDYVTVLIYANLLDYTTD 283
Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ +++ K + WTF R + N W L
Sbjct: 284 EQGTVVAGSKTEPVKFEEHWTFTRPVG--NNPWRLSGINQ 321
>gi|56552532|ref|YP_163371.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis
subsp. mobilis ZM4]
gi|260753807|ref|YP_003226700.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
gi|56544106|gb|AAV90260.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis
subsp. mobilis ZM4]
gi|258553170|gb|ACV76116.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
Length = 217
Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 8/206 (3%)
Query: 27 LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK 86
L VLG++TG+E+ F+ + ++ +KK +
Sbjct: 18 LYNVLGRRTGHEQSFTKPAEVSTTVVAQPNTALLMPASEQKKREEI-------VQPEAWD 70
Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
+R IVS FD F+ A+++Y I+++F++ + +V V++ F + R+
Sbjct: 71 GIRRIVSRDAHFDLTGFIEGAKSAYGKILEAFWQNDRSKLADMVSKDVFEAFQQVIEKRE 130
Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
+ +++ LV ID + A IE + IT+ + + + ++I+
Sbjct: 131 AEGSRLENRLVNIDKALVQKAGIEGDNAIITVSYDAWISTMLRNHEGIMIAGSSTDALPT 190
Query: 207 IDIWTFVRNIPP-SNPNWVLISTKLG 231
D+WTF R+I NW+L+ T
Sbjct: 191 HDVWTFSRSIKQEPKTNWLLVETLAA 216
>gi|241762227|ref|ZP_04760309.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis
subsp. mobilis ATCC 10988]
gi|241373274|gb|EER62893.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis
subsp. mobilis ATCC 10988]
Length = 217
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 8/206 (3%)
Query: 27 LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK 86
L VLG++TG+E+ F+ + ++ +KK +
Sbjct: 18 LYNVLGRRTGHEQSFTKPTEVSTTVVAQPNTALLMPASEQKKREEI-------VQPEAWD 70
Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
+R IVS FD F+ A+++Y I+++F++ + +V V++ F + R+
Sbjct: 71 GIRRIVSRDAHFDLTGFIEGAKSAYGKILEAFWQNDRSKLADMVSKDVFEAFQQVIEKRE 130
Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
+ +++ LV ID + A IE + IT+ + + + ++I+
Sbjct: 131 AEGSRLENRLVNIDKALVQKAGIEGDNAIITVSYDAWISTMLRNHEGIMIAGSSTDALPT 190
Query: 207 IDIWTFVRNIPP-SNPNWVLISTKLG 231
D+WTF R+I NW+L+ T
Sbjct: 191 HDVWTFSRSIKQEPKTNWLLVETLAA 216
>gi|296535049|ref|ZP_06897314.1| Tim44 domain protein [Roseomonas cervicalis ATCC 49957]
gi|296264626|gb|EFH10986.1| Tim44 domain protein [Roseomonas cervicalis ATCC 49957]
Length = 165
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 1/155 (0%)
Query: 77 LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136
+ T + + ++ I FDP FL A ++ IV +F G + L+ Y
Sbjct: 12 VPDPRTPVGQALQRIRQADAGFDPYAFLGGAEGAFRMIVTAFAAGDRATLRDLLSEDTYA 71
Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196
F +++ R+S + ++ + G+ +M I A + + IT+RIV ++ + +
Sbjct: 72 GFEQAITARESAGERQRTEIHGVHEMAIDAADLRGSVADITLRIVSDQVNLTTGPQGEAV 131
Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
S E ++ D+WTF R++ +P W L+ T+
Sbjct: 132 SG-TEAVTELTDVWTFQRDLRSGDPTWKLVGTQAA 165
>gi|11992022|gb|AAG42409.1|AF300471_12 unknown [Zymomonas mobilis subsp. mobilis ZM4]
Length = 201
Score = 118 bits (294), Expect = 8e-25, Method: Composition-based stats.
Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 8/206 (3%)
Query: 27 LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK 86
L VLG++TG+E+ F+ + ++ +KK +
Sbjct: 2 LYNVLGRRTGHEQSFTKPAEVSTTVVAQPNTALLMPASEQKKREEI-------VQPEAWD 54
Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
+R IVS FD F+ A+++Y I+++F++ + +V V++ F + R+
Sbjct: 55 GIRRIVSRDAHFDLTGFIEGAKSAYGKILEAFWQNDRSKLADMVSKDVFEAFQQVIEKRE 114
Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
+ +++ LV ID + A IE + IT+ + + + ++I+
Sbjct: 115 AEGSRLENRLVNIDKALVQKAGIEGDNAIITVSYDAWISTMLRNHEGIMIAGSSTDALPT 174
Query: 207 IDIWTFVRNIPP-SNPNWVLISTKLG 231
D+WTF R+I NW+L+ T
Sbjct: 175 HDVWTFSRSIKQEPKTNWLLVETLAA 200
>gi|78223134|ref|YP_384881.1| import inner membrane translocase subunit Tim44 [Geobacter
metallireducens GS-15]
gi|78194389|gb|ABB32156.1| import inner membrane translocase, subunit Tim44 [Geobacter
metallireducens GS-15]
Length = 322
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 31/216 (14%), Positives = 78/216 (36%), Gaps = 10/216 (4%)
Query: 16 FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
I ++L R V ++ +++ R ++ ++
Sbjct: 117 ILLIGGVLYLIYRFVASRRR-------ETAQTSGYGAQQTWRQAESVEPPPRQYGFGQTA 169
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
+ P+ + + + + FD F A++ + + ++ + + L+ +
Sbjct: 170 QAAPVD-ETSFGLAHVRQMDGSFDENRFKETAQDIFFRVQGAWTRRDLSPVADLLTPEMQ 228
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
F + K+ + + + ++ I A EE Y+T+R++ + + D+ +
Sbjct: 229 VTFRQQIDELKAAGTINRLENISVREVNITEAWQEEGRDYLTVRLLASILDYTTDESGKV 288
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+S K + WTF R + NP W L + +
Sbjct: 289 VSGSDSAPVKFEEYWTFSRPVG-PNP-WKLSAIQQA 322
>gi|253699913|ref|YP_003021102.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M21]
gi|251774763|gb|ACT17344.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M21]
Length = 318
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 33/222 (14%), Positives = 73/222 (32%), Gaps = 17/222 (7%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
F ILL A I ++ R V +++ + + + +
Sbjct: 114 IFEILLLAGI-GYLIY--RMVKKRRS------------EAAALQGAGSYSYGGYEPQGAA 158
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
L P + + + + FD F ++ + + I + + A+ L
Sbjct: 159 IPAPYRVLEPSANDVATGLSHLRQMDPGFDEGRFNDQVMDHFFKIQGGWMNRDLAALSPL 218
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
V + F D + + + + + + ++I E Y+T I + +
Sbjct: 219 VTEEMKGIFRDDIDRLLRDRQVNRLENIAVRKVEIAEVWQEAGQDYVTALIYANLLDYTT 278
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
D++ +++ K ++WTF R + N W L
Sbjct: 279 DENGQVVAGSKTEPVKFEELWTFARPVG--NNPWRLSGINQV 318
>gi|261253352|ref|ZP_05945925.1| hypothetical protein VIA_003377 [Vibrio orientalis CIP 102891]
gi|260936743|gb|EEX92732.1| hypothetical protein VIA_003377 [Vibrio orientalis CIP 102891]
Length = 292
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 36/223 (16%), Positives = 77/223 (34%), Gaps = 23/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +R +LG K G+ + K ++ + + +
Sbjct: 92 GIQFMDILIMGLIAFVIFKLMRSMLGAKQGSMNQQRQQPAFGGSAPKFEQPNVHNFEQPQ 151
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ FD F+N +R Y + ++ ++H I
Sbjct: 152 NAPQGGGFGFGAQTDVP--------HNYPPGFDQSAFINGSREHYRILQGAWNHNQLHTI 203
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
E+ V +Y+D + + + V D +I+ A + ++++ G++
Sbjct: 204 EEYVSPSLYEDLKAERAKLNGE----QHTDVMYVDAEIVRADHDATKAQLSLQFSGRYRD 259
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
A + E DIW R++ N W+++ +
Sbjct: 260 A--------VEGIEEDI---TDIWHLERDLTTPNAPWLIVGIQ 291
>gi|39996193|ref|NP_952144.1| putative lipoprotein [Geobacter sulfurreducens PCA]
gi|39982958|gb|AAR34417.1| lipoprotein, putative [Geobacter sulfurreducens PCA]
Length = 321
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 28/225 (12%), Positives = 78/225 (34%), Gaps = 17/225 (7%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
G F ILL I ++ + V ++ + +
Sbjct: 114 GVGLFDILLIGGI-LYLVYRF--VASRR------------REAAATAGRAPDWSREEPVT 158
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ + + + + F + F A++ + + ++ + +
Sbjct: 159 PQQYRYGQPAESVPAAGADSGLAHVRQMDGSFSEEQFRQLAQDVFFRVQGAWTRRDLSSA 218
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+++ + + ++ K+ + + + + ++++ A EE +IT+R + +
Sbjct: 219 REVLAPEMERALQGDVAELKARGQVNRLENIAVRQVELVEAWQEEGCDFITVRFLANLLD 278
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ D++ ++S K + WTF R + NP W L + +
Sbjct: 279 YTTDEEGRVLSGSDREPVKFEEFWTFTRPVG-PNP-WKLSAIQQA 321
>gi|254796736|ref|YP_003081572.1| hypothetical protein NRI_0348 [Neorickettsia risticii str.
Illinois]
gi|254589983|gb|ACT69345.1| conserved hypothetical protein [Neorickettsia risticii str.
Illinois]
Length = 208
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 38/218 (17%), Positives = 87/218 (39%), Gaps = 13/218 (5%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
++L+A + FF+F +L G+ + + + K +
Sbjct: 1 MELVLYAILVFFIFNRLYASFGR------------VSVERELGFKAAEVKEILEKKVRAI 48
Query: 71 LDSINELFPIGTRLNKVMRDIVSVY-TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+ ++I S++ DF F+ A ++E +F + + + KL
Sbjct: 49 DQFTYVAPSDLQEIVSAKKEIESLWKQDFSTDRFMEGAERAFEMFTKAFTDCDLKVLSKL 108
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+ + + ++ ++ RK ++ +LV + +I + + +Y T+R V + I+
Sbjct: 109 LSKKAFSVVSEKVAQRKIRGNTLERTLVALRSKNLIKLDVIKGVLYATVRFVSEQINVVR 168
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
D ++S D + + D W F R++ N +WV+
Sbjct: 169 DDAGRILSGDHDTIEVIEDKWVFERSLRSPNNSWVVCE 206
>gi|197119310|ref|YP_002139737.1| transport protein [Geobacter bemidjiensis Bem]
gi|197088670|gb|ACH39941.1| transport protein, Tim44-like domain, putative [Geobacter
bemidjiensis Bem]
Length = 318
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 35/222 (15%), Positives = 75/222 (33%), Gaps = 18/222 (8%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
F ILL A I ++ R V +++ +G +S +
Sbjct: 115 IFEILLLAGI-GYLIY--RMVKKRRSEAALQGAGSYSYGGYEQQ-------------GAT 158
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+ P + + + + FD F + +++ I + + + L
Sbjct: 159 ISAPYRVIEPSYNDVATGLSHLRQMDPGFDEGRFNDLVMDNFFKIQGGWMNRDLAVLAPL 218
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
V + F D + + + + + + +++I E Y+T RI + +
Sbjct: 219 VTEEMKGIFRDDIDRLLRDRQVNRLENIAVRNVEITEVWQEAGQDYVTARIYANLLDYTT 278
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
D++ +I+ K ++WTF R + N W L
Sbjct: 279 DENGQVITGSKTEPVKFEELWTFARPVG--NNPWRLSGINQV 318
>gi|307634800|gb|ADN78334.1| transport protein, Tim44-like domain, putative [Geobacter
sulfurreducens KN400]
Length = 321
Score = 113 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 28/225 (12%), Positives = 79/225 (35%), Gaps = 17/225 (7%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
G F ILL I ++ + V ++ + +
Sbjct: 114 GVGLFDILLIGGI-LYLVYRF--VASRR------------REAAATAGRAPDWSREEPVT 158
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ + + + + F + F A++ + + ++ + +
Sbjct: 159 PQQYRYGQPAESVPAAGADSGLAHVRQMDGSFSEEQFRQLAQDVFFRVQGAWTRRDLSSA 218
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+++ + + ++ K+ + + + + ++++ A EE + +IT+R + +
Sbjct: 219 REVLAPEMERALQGDVAELKARGQVNRLENIAVRQVELVEAWQEEGSDFITVRFLANLLD 278
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ D++ ++S K + WTF R + NP W L + +
Sbjct: 279 YTTDEEGRVLSGSDREPVKFEEFWTFTRPVG-PNP-WKLSAIQQA 321
>gi|37679309|ref|NP_933918.1| hypothetical protein VV1125 [Vibrio vulnificus YJ016]
gi|320156948|ref|YP_004189327.1| hypothetical protein VVM_03684 [Vibrio vulnificus MO6-24/O]
gi|326424146|ref|NP_761953.2| hypothetical protein VV1_3163 [Vibrio vulnificus CMCP6]
gi|37198052|dbj|BAC93889.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
gi|319932260|gb|ADV87124.1| hypothetical protein VVMO6_02102 [Vibrio vulnificus MO6-24/O]
gi|319999531|gb|AAO11480.2| hypothetical protein VV1_3163 [Vibrio vulnificus CMCP6]
Length = 289
Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 37/223 (16%), Positives = 79/223 (35%), Gaps = 24/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +RG+L K G+ + K ++ + +
Sbjct: 90 GIQFMDILIIGLIAFVIFKLMRGLLASKQGSMNQHRQQPAFGGQAPKFEQSNVHNFEQSP 149
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
G + FD F+N AR Y + ++ ++ I
Sbjct: 150 NTPT---------GGFGFGAQSDVPHNYPPGFDQVAFVNGAREHYRILQGAWNHNQLETI 200
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
E+ V +++D + + + V D +I+ A + +T +++++ G++
Sbjct: 201 EEYVSPSLFEDLKAERAKLDGE----QHTDVMYVDAQIVRADYDASTAHLSLQFSGRYRD 256
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
A + E DIW R++ N W+++ +
Sbjct: 257 A--------VEGIEEDI---TDIWHLERDLTAPNAPWMIVGIQ 288
>gi|59712270|ref|YP_205046.1| Tim44-like domain-contain protein [Vibrio fischeri ES114]
gi|59480371|gb|AAW86158.1| Tim44-like domain family [Vibrio fischeri ES114]
Length = 297
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 37/224 (16%), Positives = 78/224 (34%), Gaps = 18/224 (8%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ A I F +F R ++ K G+ G + + +
Sbjct: 92 GIQFMDILIMAGIAFILFKVFRSMMAAKAGSMNQRQGAAYAGPQGQQDAQPSFRDNQQYF 151
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ D G + FD + F+N +R Y + ++ ++ I
Sbjct: 152 QAD---QATAQPTGGFGAASADDVPHNYPPGFDMQAFINGSREHYRILQGAWNHNQLETI 208
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
++ V +Y D +T + + + V D +++ A + N ++++ G++
Sbjct: 209 QEYVSISLYNDLVQERATLEGE----QHTDVMYVDAEVVRADYDANRAQLSLQFSGRYRD 264
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
A + E DIW R++ N W++I +
Sbjct: 265 A--------VEGIEEDI---TDIWHLERDLTQPNAPWLIIGIQA 297
>gi|197334926|ref|YP_002156484.1| import inner membrane translocase, subunit Tim44 [Vibrio fischeri
MJ11]
gi|197316416|gb|ACH65863.1| import inner membrane translocase, subunit Tim44 [Vibrio fischeri
MJ11]
Length = 297
Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 37/224 (16%), Positives = 78/224 (34%), Gaps = 18/224 (8%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ A I F +F R ++ K G+ G + + +
Sbjct: 92 GIQFMDILIMAGIAFILFKVFRSMMAAKAGSMNQRQGAAYAGPQGQQDAQPSFRDNQQYF 151
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ D G + FD + F+N +R Y + ++ ++ I
Sbjct: 152 QAD---QATTQPTGGFGAASADDVPHNYPPGFDMQSFINGSREHYRILQGAWNHNQLETI 208
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
++ V +Y D +T + + + V D +++ A + N ++++ G++
Sbjct: 209 QEYVSISLYNDLVQERATLEGE----QHTDVMYVDAEVVRADHDANRAQLSLQFSGRYRD 264
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
A + E DIW R++ N W++I +
Sbjct: 265 A--------VEGIEEDI---TDIWHLERDLTQPNAPWLIIGIQA 297
>gi|289609222|emb|CBI60483.1| unnamed protein product [Sordaria macrospora]
Length = 173
Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 33/182 (18%), Positives = 82/182 (45%), Gaps = 9/182 (4%)
Query: 18 FITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINEL 77
+ F+ ++L VLGK+TG+E + + + + R I + + +
Sbjct: 1 MVAAFLAMRLYAVLGKRTGHE--PLPRTADERIATPPVARPIEVTPEAR-------VLGP 51
Query: 78 FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD 137
+ + +R +++ FD F+ A+++Y I+++F++G +E L + V +
Sbjct: 52 RHVESGAESGLRSLIAADPSFDVAQFIEGAKSAYRMILEAFWKGDEATLEWLTERDVREA 111
Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197
F +++ R + + + LV I+ + AS+E +++R + + D + +++
Sbjct: 112 FAQAIADRNAAGHVLDNRLVSIERAVVTEASVEGGVARVSVRFDADIAAITRDAEGNIVA 171
Query: 198 SD 199
Sbjct: 172 GS 173
>gi|88608273|ref|YP_506249.1| Tim44-like domain-containing protein [Neorickettsia sennetsu str.
Miyayama]
gi|88600442|gb|ABD45910.1| Tim44-like domain protein [Neorickettsia sennetsu str. Miyayama]
Length = 208
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 38/218 (17%), Positives = 87/218 (39%), Gaps = 13/218 (5%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
++L+A + FF+F +L G+ + + + K +D
Sbjct: 1 MELILYAILVFFIFNRLYASFGR------------ISVERELGFKAAEVKEILEKKVRDI 48
Query: 71 LDSINELFPIGTRLNKVMRDIVSVY-TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+ ++I S++ DF F+ A ++E +F + + + KL
Sbjct: 49 DQFTYVAPSDLQEIVSAKKEIESLWKQDFSTDRFMEGAERAFEMFTKAFTDCDLKVLSKL 108
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+ + + ++ + RK ++ +LV + +I + + +Y T+R V + I+
Sbjct: 109 LSKKAFSVVSEKIEQRKIRGNTLERTLVALRSKNLIKLDVIKGVLYATVRFVSEQINVVR 168
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
D ++S D + + D W F R++ + +WV+
Sbjct: 169 DDAGRVLSGDHDTIEVIEDKWIFERSLKSPHNSWVVCE 206
>gi|120600531|ref|YP_965105.1| import inner membrane translocase subunit Tim44 [Shewanella sp.
W3-18-1]
gi|120560624|gb|ABM26551.1| import inner membrane translocase, subunit Tim44 [Shewanella sp.
W3-18-1]
Length = 291
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 35/231 (15%), Positives = 89/231 (38%), Gaps = 23/231 (9%)
Query: 3 FIKMDS---GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59
F+ IL+ + F +F +R V+ K G + + +G+ + + ++
Sbjct: 81 FMGEGFENIQFMDILIIGLLAFVLFKIVRTVMASKAGAQPRPAYAGAGQPNPNFQRQQAE 140
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
T +N +S + F ++ FD FL AR+ Y+ + ++
Sbjct: 141 QTGFASNATNNANSGSHGFAQ-----AASDVPFNLPAGFDLPGFLEGARSHYKTLQLAWN 195
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
E + I++ V ++ + ++ + + + V D +++ A+ N ++++
Sbjct: 196 ENDLSKIQEYVSIELFNELSNQRRELVGD----QHTEVMFLDAELVRATHTANLAEVSVK 251
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G++ + E ++W RN+ +N W+++ +
Sbjct: 252 FSGRYRDT--------VEGVEEDIK---EVWHLERNVAQANSPWLIVGIEQ 291
>gi|254507626|ref|ZP_05119759.1| import inner membrane translocase, subunit Tim44 [Vibrio
parahaemolyticus 16]
gi|219549513|gb|EED26505.1| import inner membrane translocase, subunit Tim44 [Vibrio
parahaemolyticus 16]
Length = 292
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 35/223 (15%), Positives = 80/223 (35%), Gaps = 23/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +RG+LG K G+ + K ++ + + +
Sbjct: 92 GIQFMDILIIGLIAFVIFKLMRGMLGAKQGSMNQQRQQPAFGGSAPKFEQPNVHNFEQPQ 151
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ + + FD F+N +R Y + ++ ++ I
Sbjct: 152 QTGSQGGFGFGSQTDVP--------HNYPPGFDHAAFINGSREHYRILQGAWNHNQLETI 203
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
E+ V ++ D + + + + V D +I+ A + + ++++ G++
Sbjct: 204 EEYVSPSLFADLKSERAKLEGE----QHTDVMYVDAEIVRADYDASKAQLSLQFSGRYRD 259
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
A + E DIW R++ N W+++ +
Sbjct: 260 A--------VEGIEEDIA---DIWHLERDLTVPNAPWLIVGIQ 291
>gi|323491921|ref|ZP_08097090.1| hypothetical protein VIBR0546_04127 [Vibrio brasiliensis LMG 20546]
gi|323313779|gb|EGA66874.1| hypothetical protein VIBR0546_04127 [Vibrio brasiliensis LMG 20546]
Length = 292
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 34/223 (15%), Positives = 79/223 (35%), Gaps = 23/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +RG+LG K G+ + K ++ + + +
Sbjct: 92 GIQFMDILIMGLIAFVIFKLMRGMLGSKQGSMNKNRQQPAFGGSAPKFEQPNVHNFEQPQ 151
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ FD F+N +R Y + ++ ++ I
Sbjct: 152 SGAQGGGFGFGAQS--------DIPHNYPPGFDQTAFINGSREHYRILQGAWNHNQLETI 203
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
E+ V +++D + + + + V D +I+ A + + ++++ G++
Sbjct: 204 EEYVSPSLFEDLKSERAKLEGE----QHTDVMYVDAEIVRADYDASKAQLSLQFSGRYRD 259
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
+ + E DIW R++ N W+++ +
Sbjct: 260 S--------VEGIEENIE---DIWHLERDLTTPNAPWLIVGIQ 291
>gi|86148689|ref|ZP_01066968.1| hypothetical protein MED222_20209 [Vibrio sp. MED222]
gi|218710150|ref|YP_002417771.1| hypothetical protein VS_2180 [Vibrio splendidus LGP32]
gi|85833536|gb|EAQ51715.1| hypothetical protein MED222_20209 [Vibrio sp. MED222]
gi|218323169|emb|CAV19346.1| hypothetical protein VS_2180 [Vibrio splendidus LGP32]
Length = 307
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 37/231 (16%), Positives = 86/231 (37%), Gaps = 25/231 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGN--------EKPFSGFFSGKYVFSKRDERG 58
IL+ I F F LRG+LG K G+ ++P G + +
Sbjct: 93 GIQFMDILIMGLIAFLAFKFLRGMLGAKQGSMNQQNARGQQPAFGGMGQNKFEQPKQQPN 152
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ + + + ++ G + FD F+N +R Y + ++
Sbjct: 153 VHNFEQAQPQSQ--PHSQNSAGGFGFGAQSDVPHNYPPGFDQAAFINGSREHYRTLQGAW 210
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
+++ IE+ V +++D + + + + V D +I+ A + + +++
Sbjct: 211 NHNELNTIEEYVSPSLFEDLKAERNKLDGD----QHTDVMYVDAEIVRADHDGSKAQLSL 266
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
+ G++ D + + + DIW R++ N W+++ +
Sbjct: 267 QFSGRY----RDTADGIEE-------DITDIWHLERDLTTQNAPWLIVGIQ 306
>gi|153002504|ref|YP_001368185.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
OS185]
gi|151367122|gb|ABS10122.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
OS185]
Length = 287
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 36/231 (15%), Positives = 87/231 (37%), Gaps = 27/231 (11%)
Query: 3 FIKMDSGDF---LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59
F+ + IL+ + F +F +R V+ KTG ++ + +G+
Sbjct: 81 FMGGGFENIQIMDILIIGLLAFVIFKIVRTVMASKTGAQQRPAYAGAGQPNP-------- 132
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ + + + +IN + FD FL AR+ Y+ + ++
Sbjct: 133 -NMQRQQTEQTGFAINTNSGSNGFGQATSAVPFDLPAGFDLPGFLEGARSHYKTLQLAWN 191
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
E + I++ V +Y + ++ + + + V D +++ A+ N ++++
Sbjct: 192 ENDLSKIQEYVSIDLYNELSNQRRELVGD----QHTEVMFLDAELVRATHNANLAEVSVK 247
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G++ + E +IW RN+ +N W+++ +
Sbjct: 248 FSGRYRDT--------VEGVEEDIK---EIWHLERNVTQANSPWLIVGIEQ 287
>gi|315497202|ref|YP_004086006.1| import inner membrane translocase subunit tim44 [Asticcacaulis
excentricus CB 48]
gi|315415214|gb|ADU11855.1| import inner membrane translocase subunit Tim44 [Asticcacaulis
excentricus CB 48]
Length = 207
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 39/222 (17%), Positives = 82/222 (36%), Gaps = 20/222 (9%)
Query: 12 LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71
+L+ A I V QL VLG++ G D+ + + N
Sbjct: 4 DLLILALIAVVVLFQLYNVLGRRVGF--------------KAEDKPVVPKTEDSEGPFNR 49
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
+ + S F+ +F+ +AR +YE IV +F G++ ++ +
Sbjct: 50 PGQEPKAQPERLRMPNLDALKSRDAHFNEINFVEKAREAYEQIVLAFNRGEIEGLKDRLS 109
Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
VY F ++ R + + S V + ++++ + +R + + + D
Sbjct: 110 ESVYGVFAKAIEARGEQKA-MTVSFVESPKTDLDQIDLKDDRASVRVRFLSELLYEMADP 168
Query: 192 DNLLISSDPEIF-GKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
D +P+ + + WTF +N+ W+L + +
Sbjct: 169 DG----GEPKKAHRRTAEFWTFQKNLKSPTNPWILSRVEAAK 206
>gi|146294690|ref|YP_001185114.1| import inner membrane translocase subunit Tim44 [Shewanella
putrefaciens CN-32]
gi|145566380|gb|ABP77315.1| import inner membrane translocase, subunit Tim44 [Shewanella
putrefaciens CN-32]
gi|319427926|gb|ADV56000.1| import inner membrane translocase subunit Tim44 [Shewanella
putrefaciens 200]
Length = 291
Score = 110 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 34/231 (14%), Positives = 88/231 (38%), Gaps = 23/231 (9%)
Query: 3 FIKMDS---GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59
F+ IL+ + F +F +R V+ K G + + +G+ + + ++
Sbjct: 81 FMGEGFENIQFMDILIIGLLAFVLFKIVRTVMASKAGAQPRPAYAGAGQPSPNLQRQQTE 140
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
T +N +S + ++ FD FL AR+ Y+ + ++
Sbjct: 141 QTGFASNATNNANSGSHGVAQ-----AASDVPFNLPAGFDLPSFLEGARSHYKTLQLAWN 195
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
E + I++ V ++ + ++ + + V D +++ A+ N ++++
Sbjct: 196 ENDLSKIQEYVSIELFNELSNQRRELVGE----QHTEVMFLDAELVRATHTANLAEVSVK 251
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G++ + D + ++W RN+ +N W+++ +
Sbjct: 252 FSGRYRDTV-----ECVEED------IKEVWHLERNVAQANSPWLIVGIEQ 291
>gi|269965560|ref|ZP_06179674.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
gi|269829785|gb|EEZ84020.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
Length = 290
Score = 110 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 37/223 (16%), Positives = 79/223 (35%), Gaps = 23/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +RG+LG K G+ + SK ++ + +
Sbjct: 90 GIQFMDILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNFEQQP 149
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+N + FD F+N +R Y + ++ ++ I
Sbjct: 150 NTNNGGFGGFGAQTDVP--------HNYPPGFDQAAFINGSREHYRILQGAWNHNQLETI 201
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
E+ V +++D + + + V D +I+ A + N ++++ G++
Sbjct: 202 EEYVSPSLFEDLKAERAKLDGE----QHTDVMYVDAEIVRADYDANKAQLSLQFSGRYRD 257
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
+ E DIW R++ N W+++ +
Sbjct: 258 T--------VEGVEEEIE---DIWHLERDLTAPNAPWLIVGIQ 289
>gi|323499402|ref|ZP_08104378.1| hypothetical protein VISI1226_21579 [Vibrio sinaloensis DSM 21326]
gi|323315587|gb|EGA68622.1| hypothetical protein VISI1226_21579 [Vibrio sinaloensis DSM 21326]
Length = 292
Score = 110 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 36/223 (16%), Positives = 80/223 (35%), Gaps = 23/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +RG+LG K G+ + + + E+ + +
Sbjct: 92 GIQFMDILIIGLIAFLIFKLMRGMLGAKQGSMNQHRQQPAFGGQSAPKFEQPNVHNFEQP 151
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ + + FD F+N +R Y + ++ ++ I
Sbjct: 152 QTGSQGGFGFGGQTDVP--------HNYPPGFDHAAFINGSREHYRILQGAWNHNQLETI 203
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
E+ V +Y+D + + + V D +I+ A + + ++++ G++
Sbjct: 204 EEYVSPSLYEDLKAERAKLDGE----QHTDVMYVDAEIVRADYDASKAQLSLQFSGRYRD 259
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
A + E DIW R++ N W+++ +
Sbjct: 260 A--------VEGVEENIE---DIWHLERDLTTPNAPWLIVGIQ 291
>gi|209694565|ref|YP_002262493.1| putative transport protein [Aliivibrio salmonicida LFI1238]
gi|208008516|emb|CAQ78689.1| putative transport protein [Aliivibrio salmonicida LFI1238]
Length = 316
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 31/224 (13%), Positives = 78/224 (34%), Gaps = 16/224 (7%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
I++ A + F +F R + K G+ G S ++ +
Sbjct: 109 GIQFMDIIIMAGVAFVLFKLFRMFMASKAGSINQRQGAAYAGPQASHDEKPSFRDNQQYF 168
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ D + + + FD + F+N +R Y + ++ ++ I
Sbjct: 169 QGDQAQPQTQTTGGFGSIGSD-EVPHNYPPGFDLQGFINGSREHYRILQGAWNHNQLETI 227
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
++ V +Y D + + + + V D +++ A ++ ++++ G++
Sbjct: 228 QEYVSISLYNDLVQERANLEGE----QHTDVMFVDAEVVRAEHNASSAQLSLQFSGRYRD 283
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ + E D+W R++ N W++I +
Sbjct: 284 S--------VEGLQEDI---TDVWHLERDLTQPNAPWLIIGIQA 316
>gi|28897713|ref|NP_797318.1| hypothetical protein VP0939 [Vibrio parahaemolyticus RIMD 2210633]
gi|28805926|dbj|BAC59202.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
gi|328473305|gb|EGF44153.1| hypothetical protein VP10329_21550 [Vibrio parahaemolyticus 10329]
Length = 290
Score = 109 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 38/223 (17%), Positives = 81/223 (36%), Gaps = 23/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +RG+LG K G+ + SK ++ + +
Sbjct: 90 GIQFMDILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNASKFEQPNMQNFEQQP 149
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ T + FD F+N +R Y + ++ ++ I
Sbjct: 150 NTN--------AGGFTGFGAQTDVPHNYPPGFDQAAFINGSREHYRILQGAWNHNQLDTI 201
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
E+ V +++D + + + + V D +I+ A + N ++++ G++
Sbjct: 202 EEYVSPSLFEDLKAERAKLEGE----QHTDVMYVDAEIVRAEYDANKAQLSLQFSGRYRD 257
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
A+ E DIW R++ N W+++ +
Sbjct: 258 AA--------EGVEEDIE---DIWHLERDLTVPNAPWLIVGIQ 289
>gi|262394794|ref|YP_003286648.1| hypothetical protein VEA_004023 [Vibrio sp. Ex25]
gi|262338388|gb|ACY52183.1| hypothetical protein VEA_004023 [Vibrio sp. Ex25]
Length = 290
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 37/223 (16%), Positives = 78/223 (34%), Gaps = 23/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +RG+LG K G+ + SK ++ + +
Sbjct: 90 GIQFMDILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNFEQQP 149
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+N + FD F+N +R Y + ++ ++ I
Sbjct: 150 NTNNGGFGGFGAQTDVP--------HNYPPGFDQAAFINGSREHYRILQGAWNHNQLETI 201
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
E+ V +++D + + + V D +I+ A N ++++ G++
Sbjct: 202 EEYVSPSLFEDLKAERAKLDGE----QHTDVMYVDAEIVRADYNANKAQLSLQFSGRYRD 257
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
+ E DIW R++ N W+++ +
Sbjct: 258 T--------VEGVEEEIE---DIWHLERDLTVPNAPWLIVGIQ 289
>gi|148265319|ref|YP_001232025.1| import inner membrane translocase, subunit Tim44 [Geobacter
uraniireducens Rf4]
gi|146398819|gb|ABQ27452.1| import inner membrane translocase, subunit Tim44 [Geobacter
uraniireducens Rf4]
Length = 318
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 21/221 (9%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
F ILL A I ++ + V K+ V S G
Sbjct: 117 FEILLLAGI-GYLIYRF--VKKKR---------------VDSSYSTYEQGGYQHGNVTPI 158
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
P T ++ M I + FD F + + + I ++ + ++ L+
Sbjct: 159 YGGTESYEPQPTDVDTGMAHIRQMDPSFDESRFNDSVMDIFFKIQGAWMNRDLSSVSGLL 218
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
+ + F + + +++ + + + +++I E YIT I + + D
Sbjct: 219 TDEMKRIFQEDMDRLLRDKQVNRLENIAVRNVEISEVWQESGQDYITALIYANLLDYTTD 278
Query: 191 -KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++S K + WTF R + N W L +
Sbjct: 279 DATGTVVSGSKTEPVKFEEYWTFTRPVG--NNPWRLSAINQ 317
>gi|258621272|ref|ZP_05716306.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|262171047|ref|ZP_06038725.1| hypothetical protein VII_001862 [Vibrio mimicus MB-451]
gi|258586660|gb|EEW11375.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|261892123|gb|EEY38109.1| hypothetical protein VII_001862 [Vibrio mimicus MB-451]
Length = 290
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 35/223 (15%), Positives = 79/223 (35%), Gaps = 24/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +RG+L K G+ + + E+ + +
Sbjct: 91 GIQFMDILIMGLIAFVIFKLMRGLLASKQGSMNQSQQQPAYSGMNRTSFEQPNVHNFEQP 150
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ G + FD F+N AR Y + ++ ++ I
Sbjct: 151 QS---------MGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 201
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ V +++D + + + + + V D +I+ A + N ++++ G++
Sbjct: 202 REYVSPSLFEDLQAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 257
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
A + E D+W R++ N W+++ +
Sbjct: 258 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 289
>gi|24375821|ref|NP_719864.1| hypothetical protein SO_4340 [Shewanella oneidensis MR-1]
gi|24350775|gb|AAN57308.1|AE015867_7 conserved hypothetical protein [Shewanella oneidensis MR-1]
Length = 291
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 34/231 (14%), Positives = 82/231 (35%), Gaps = 27/231 (11%)
Query: 3 FIKMDS---GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59
F+ IL+ A + F +F +R V+ K + + +G+
Sbjct: 85 FMGEGFENIQFMDILIIALLAFVLFKIVRTVMASKASAQPRPAYAGAGQPNP-------- 136
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
L + + + + + + FD FL AR+ Y+ + ++
Sbjct: 137 -NLQRQQAEQTGFASSANSGSNGFAQAASTVPFHLPAGFDLPGFLEGARSHYKTLQVAWN 195
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
E + I++ V +Y + ++ + + V D +++ A+ N ++++
Sbjct: 196 ENDLSKIQEYVSIELYNELSNQRRELVGE----QHTEVMFLDAELVRATHNANLAEVSVK 251
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G++ + E +IW RN+ +N W+++ +
Sbjct: 252 FSGRYRDT--------VEGVEEDIK---EIWHLERNLTQANAPWLIVGIEQ 291
>gi|312882412|ref|ZP_07742153.1| hypothetical protein VIBC2010_18049 [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309369812|gb|EFP97323.1| hypothetical protein VIBC2010_18049 [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 281
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 35/223 (15%), Positives = 80/223 (35%), Gaps = 21/223 (9%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +R +LG K G+ + SK ++ + + +
Sbjct: 79 GVQFMDILIMGIIAFVIFKLVRAMLGAKQGSLNQHRQQPAFGGSASKFEQPNVNQFKEQQ 138
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ + G + + FD F+N +R Y + ++ ++ I
Sbjct: 139 QPTTNQT------GGFGFSAQSDVPHNYPPGFDNAAFVNGSREHYRLLQGAWNHNQLDTI 192
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
E+ V ++ D + + + V D +I+ A + + ++++ G++
Sbjct: 193 EEYVSQSLFDDLKTERAKLSGE----QHTDVMFVDAEIVRADYDASKAQLSLQFSGRYRD 248
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
+ E DIW R++ N W+++ +
Sbjct: 249 T--------VEGIEEDI---TDIWHLERDLTTPNAPWLIVGIQ 280
>gi|304412224|ref|ZP_07393833.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
OS183]
gi|307306968|ref|ZP_07586708.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
BA175]
gi|304349490|gb|EFM13899.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
OS183]
gi|306910546|gb|EFN40976.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
BA175]
Length = 287
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 34/231 (14%), Positives = 85/231 (36%), Gaps = 27/231 (11%)
Query: 3 FIKMDSGDF---LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59
F+ + IL+ + F +F +R V+ K G ++ + +G+
Sbjct: 81 FMGGGFENIQIMDILIIGLLAFVLFKIVRTVMASKAGAQQRPAYAGAGQPNP-------- 132
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ + + + + N + FD FL AR+ Y+ + ++
Sbjct: 133 -NMQRQQAEQTGFATNANSGSNGFGQATSAVPFDLPAGFDLPGFLEGARSHYKTLQLAWN 191
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
E + I++ V +Y + ++ + + + V D +++ A+ N ++++
Sbjct: 192 ENDLSKIQEYVSIDLYNELSNQRRELVGD----QHTEVMFLDAELVRATHNANLAEVSVK 247
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G++ + E +IW RN+ +N W+++ +
Sbjct: 248 FSGRYRDT--------VEGVEEEIK---EIWHLERNVTQANSPWLIVGIEQ 287
>gi|261210612|ref|ZP_05924905.1| hypothetical protein VCJ_000865 [Vibrio sp. RC341]
gi|260840397|gb|EEX66968.1| hypothetical protein VCJ_000865 [Vibrio sp. RC341]
Length = 289
Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats.
Identities = 35/223 (15%), Positives = 77/223 (34%), Gaps = 24/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +RG+L K G+ + + E+ + +
Sbjct: 90 GIQFMDILIMGLIAFVIFKLMRGLLASKQGSMNQSQQQPAFGGMNRTPFEQPNVHNFEQP 149
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ G + FD F+N AR Y + ++ ++ I
Sbjct: 150 QS---------MGGGFGSAAQSDIPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 200
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ V ++ D + + + + V D +I+ A + N ++++ G++
Sbjct: 201 REYVSPSLFDDLKAERANYEGE----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 256
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
A + E D+W R++ N W+++ +
Sbjct: 257 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 288
>gi|258626499|ref|ZP_05721339.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258581210|gb|EEW06119.1| conserved hypothetical protein [Vibrio mimicus VM603]
Length = 290
Score = 108 bits (268), Expect = 7e-22, Method: Composition-based stats.
Identities = 35/223 (15%), Positives = 79/223 (35%), Gaps = 24/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +RG+L K G+ + + E+ + +
Sbjct: 91 GIQFMDILIMGLIAFVIFKLMRGLLASKQGSMNQSQQQPAYSGMNRTSFEQPNVHNFEQP 150
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ G + FD F+N AR Y + ++ ++ I
Sbjct: 151 QS---------MGGGFGSAAQSDVPHNYPVGFDRVAFVNGAREHYRILQGAWNHNQLETI 201
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ V +++D + + + + + V D +I+ A + N ++++ G++
Sbjct: 202 REYVSPSLFEDLQAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 257
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
A + E D+W R++ N W+++ +
Sbjct: 258 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 289
>gi|320352867|ref|YP_004194206.1| import inner membrane translocase subunit Tim44 [Desulfobulbus
propionicus DSM 2032]
gi|320121369|gb|ADW16915.1| import inner membrane translocase subunit Tim44 [Desulfobulbus
propionicus DSM 2032]
Length = 313
Score = 108 bits (268), Expect = 8e-22, Method: Composition-based stats.
Identities = 30/227 (13%), Positives = 75/227 (33%), Gaps = 12/227 (5%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
G +L+ + +F++ + +P + SG +
Sbjct: 97 GMGILPLLILGGVGYFLYKRFVN---------RPAAPSSSGYQPPPAPNMFQGGGGQFAG 147
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ + + +I + FD K FL A + + I + + +
Sbjct: 148 NTVPPVPPIPPIRATNTMEQGLAEIRATDPGFDDKYFLEVASDVFFKIQAGWMRRDLSSY 207
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
L+ ++ ++ + + + K + + ++II A + ++T+ +
Sbjct: 208 RHLLGQQLAAEYEQHFARMQELGQINKLESIAVRKVEIIAAGSDNGEDFVTVLFTANLLD 267
Query: 187 ASYD-KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ D K L+ K + WT+ R + + W L ++ E
Sbjct: 268 YTVDEKTGALVEGSMTEPIKFAEKWTWARPMRTED--WKLEGIEVVE 312
>gi|163803720|ref|ZP_02197579.1| hypothetical protein 1103602000427_AND4_04363 [Vibrio sp. AND4]
gi|159172471|gb|EDP57338.1| hypothetical protein AND4_04363 [Vibrio sp. AND4]
Length = 288
Score = 108 bits (268), Expect = 8e-22, Method: Composition-based stats.
Identities = 37/223 (16%), Positives = 77/223 (34%), Gaps = 25/223 (11%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +RG+LG K G + SK ++ + +
Sbjct: 90 GIQFMDILIMGLIAFVIFKLMRGMLGAKQGTMNQHRQQPAFGGNASKFEQPNMQNFEQQP 149
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ FD F+N +R Y + ++ ++H I
Sbjct: 150 NSAGTGGF----------GSKTDIPHNYPPGFDQAAFVNGSREHYRTLQGAWNHNQLHTI 199
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
E+ V ++ D + + + V D +I+ A + N ++++ G++
Sbjct: 200 EEYVSPSLFDDLKAERAKLDGE----QHTDVMYVDAEIVRADYDANKAQLSLQFSGRYRD 255
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
+ + E DIW R++ N W+++ +
Sbjct: 256 S--------VEGVEEDIQ---DIWHLERDLTVPNAPWLIVGIQ 287
>gi|217975072|ref|YP_002359823.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
OS223]
gi|217500207|gb|ACK48400.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
OS223]
Length = 287
Score = 108 bits (268), Expect = 8e-22, Method: Composition-based stats.
Identities = 34/231 (14%), Positives = 85/231 (36%), Gaps = 27/231 (11%)
Query: 3 FIKMDSGDF---LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59
F+ + IL+ + F +F +R V+ K G ++ + +G+
Sbjct: 81 FMGGGFENIQIMDILIIGLLAFVLFKIVRTVMASKAGAQQRPAYAGAGQPNP-------- 132
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ + + + + N + FD FL AR+ Y+ + ++
Sbjct: 133 -NMQRQQAEQTGFATNANSGSNGFGQAKSAVPFDLPAGFDLPGFLEGARSHYKTLQLAWN 191
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
E + I++ V +Y + ++ + + + V D +++ A+ N ++++
Sbjct: 192 ENDLIKIQEYVSIELYNELSNQRRELVGD----QHTEVMFLDAELVRATHNANLAEVSVK 247
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G++ + E +IW RN+ +N W+++ +
Sbjct: 248 FSGRYRDT--------VEGVEEEIK---EIWHLERNVTQANSPWLIVGIEQ 287
>gi|229515345|ref|ZP_04404805.1| hypothetical protein VCB_003002 [Vibrio cholerae TMA 21]
gi|229348050|gb|EEO13009.1| hypothetical protein VCB_003002 [Vibrio cholerae TMA 21]
Length = 291
Score = 108 bits (268), Expect = 9e-22, Method: Composition-based stats.
Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 24/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +R L K G+ + + E+ + +
Sbjct: 92 GIQFMDILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQP 151
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ G + FD F+N AR Y + ++ ++ I
Sbjct: 152 QS---------VGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 202
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ V +++D + + + + + V D +I+ A + N ++++ G++
Sbjct: 203 REYVSPSLFEDLKAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 258
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
A + E D+W R++ N W+++ +
Sbjct: 259 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 290
>gi|262166075|ref|ZP_06033812.1| hypothetical protein VMA_002525 [Vibrio mimicus VM223]
gi|262025791|gb|EEY44459.1| hypothetical protein VMA_002525 [Vibrio mimicus VM223]
Length = 290
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 35/223 (15%), Positives = 79/223 (35%), Gaps = 24/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +RG+L K G+ + + E+ + +
Sbjct: 91 GIQFMDILIMGLIAFVIFKLMRGLLASKQGSMNQSQQQPAYSGMNRTSFEQPNVHNFEQP 150
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ G + FD F+N AR Y + ++ ++ I
Sbjct: 151 QS---------MGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 201
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ V +++D + + + + + V D +I+ A + N ++++ G++
Sbjct: 202 REYVSPSLFEDLQAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 257
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
A + E D+W R++ N W+++ +
Sbjct: 258 A--------VEGIEENIE---DVWHLERDLTVQNAPWLIVGIQ 289
>gi|260776293|ref|ZP_05885188.1| hypothetical protein VIC_001677 [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607516|gb|EEX33781.1| hypothetical protein VIC_001677 [Vibrio coralliilyticus ATCC
BAA-450]
Length = 292
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 33/223 (14%), Positives = 80/223 (35%), Gaps = 23/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ + F +F +RG+LG K G+ + K ++ + +
Sbjct: 92 GIQFMDILIMGLVAFIIFKLMRGLLGSKQGSMNQQRQQPAFGGSAPKFEQPNVHNFEQQP 151
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ + + FD F+N +R Y + ++ ++ I
Sbjct: 152 QSGSQGGFGFGAQS--------DIPHNYPPGFDKVAFINGSREHYRTLQGAWNHNQLDTI 203
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
E+ V +++D + + + + V D +I+ A + + ++++ G++
Sbjct: 204 EEYVSPSLFEDLKAERAKLEGE----QHTDVMYVDAEIVRADYDASKAQLSLQFSGRYRD 259
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
A + + DIW R++ N W+++ +
Sbjct: 260 AV-----------ENVEENIEDIWHLERDLTVPNAPWLIVGIQ 291
>gi|149192059|ref|ZP_01870285.1| hypothetical protein VSAK1_02529 [Vibrio shilonii AK1]
gi|148834122|gb|EDL51133.1| hypothetical protein VSAK1_02529 [Vibrio shilonii AK1]
Length = 294
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 42/225 (18%), Positives = 80/225 (35%), Gaps = 24/225 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGK 64
IL+F I F +F +RG+LG K G N++ F G + +
Sbjct: 91 GINFMDILIFGLIAFVIFKFMRGMLGAKQGSMNQQRQQPAFGGNTRNQFEQQPNFQNFEQ 150
Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
+ + FD FLN AR Y + ++ ++H
Sbjct: 151 PQNGGAATGGFGAAGHS-------DVPHNYPPGFDQAAFLNGAREHYRILQGAWNHNELH 203
Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
IE+ V + QD + + + + V D +I+ A + N ++++ G++
Sbjct: 204 TIEEYVSPSLLQDLMAERAKLEGE----QHTDVMYVDAEIVRADFDANKAQLSLQFSGRY 259
Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
A + + DIW R++ N W+++ +
Sbjct: 260 RDAV-----------ENVEEDIEDIWHLERDLTVPNAPWLIVGIQ 293
>gi|126176210|ref|YP_001052359.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
OS155]
gi|125999415|gb|ABN63490.1| import inner membrane translocase, subunit Tim44 [Shewanella
baltica OS155]
Length = 287
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/231 (14%), Positives = 84/231 (36%), Gaps = 27/231 (11%)
Query: 3 FIKMDSGDF---LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59
F+ + IL+ + F +F +R V+ K G ++ + +G+
Sbjct: 81 FMGGGFENIQIMDILIIGLLAFVLFKIVRTVMASKAGAQQRPAYAGAGQPNP-------- 132
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ + + + + N + FD FL AR+ Y+ + ++
Sbjct: 133 -NMQRQQAEQTGFATNANSGSNGFGQATSAVPFDLPAGFDLPGFLEGARSHYKTLQLAWN 191
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
E + I++ V +Y + ++ + + + V D +++ A+ N ++++
Sbjct: 192 ENDLRKIQEYVSIDLYNELSNQRRELVGD----QHTEVMFLDAELVRATHNANLAEVSVK 247
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G++ + E +IW RN+ N W+++ +
Sbjct: 248 FSGRYRDT--------VEGVEEDIK---EIWHLERNVTQVNSPWLIVGIEQ 287
>gi|229529012|ref|ZP_04418402.1| hypothetical protein VCG_002105 [Vibrio cholerae 12129(1)]
gi|229332786|gb|EEN98272.1| hypothetical protein VCG_002105 [Vibrio cholerae 12129(1)]
Length = 291
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 24/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +R L K G+ + + E+ + +
Sbjct: 92 GIQFMDILIMGLIAFVIFKLMRAFLASKQGSLNQSQQQPAYSGMNRTPFEQPNVHNFEQP 151
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ G + FD F+N AR Y + ++ ++ I
Sbjct: 152 QS---------MGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 202
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ V +++D + + + + + V D +I+ A + N ++++ G++
Sbjct: 203 REYVSPSLFEDLKAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 258
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
A + E D+W R++ N W+++ +
Sbjct: 259 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 290
>gi|119776251|ref|YP_928991.1| hypothetical protein Sama_3119 [Shewanella amazonensis SB2B]
gi|119768751|gb|ABM01322.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
Length = 295
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 31/231 (13%), Positives = 85/231 (36%), Gaps = 25/231 (10%)
Query: 3 FIKMDSGDF---LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59
F+ + I++ A + F +F +R ++ K + + +G+ + +
Sbjct: 87 FMGEGFENIQIMDIVIIALLAFVLFKVIRMLMASKAQAQPRPAYSGAGQASTAPGQDL-- 144
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+++ + L + FD FL AR Y+ + ++
Sbjct: 145 -----YRQQAEPAAFGGLGGNSGFAQPQSTVPFQLPPGFDLAAFLEGARGHYKTLQQAWN 199
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
EG ++ I++ V ++ + + + + + V D +++ A+ ++++
Sbjct: 200 EGDLNKIQEYVSIELFNELSQQRRELEGQ----QHTEVMFLDAELVRATYNNELAEVSVK 255
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G++ A+ E ++W RN+ +N W+++ +
Sbjct: 256 FSGRYRDAA--------EGVEEDIK---EVWHLERNLLQANSPWLIVGIQQ 295
>gi|254286893|ref|ZP_04961845.1| hypothetical protein A33_1875 [Vibrio cholerae AM-19226]
gi|150423043|gb|EDN14992.1| hypothetical protein A33_1875 [Vibrio cholerae AM-19226]
Length = 291
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 24/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +R L K G+ + + E+ + +
Sbjct: 92 GIQFMDILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQP 151
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ G + FD F+N AR Y + ++ ++ I
Sbjct: 152 QS---------MGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 202
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ V +++D + + + + + V D +I+ A + N ++++ G++
Sbjct: 203 REYVSPSLFEDLKAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 258
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
A + E D+W R++ N W+++ +
Sbjct: 259 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 290
>gi|15641966|ref|NP_231598.1| hypothetical protein VC1964 [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121590647|ref|ZP_01677981.1| hypothetical protein VC274080_2004 [Vibrio cholerae 2740-80]
gi|121728634|ref|ZP_01681653.1| hypothetical protein VCV52_1929 [Vibrio cholerae V52]
gi|147674189|ref|YP_001217491.1| hypothetical protein VC0395_A1550 [Vibrio cholerae O395]
gi|153217402|ref|ZP_01951153.1| hypothetical protein A55_2172 [Vibrio cholerae 1587]
gi|153801838|ref|ZP_01956424.1| hypothetical protein A51_B2032 [Vibrio cholerae MZO-3]
gi|153822436|ref|ZP_01975103.1| hypothetical protein A5E_2262 [Vibrio cholerae B33]
gi|229507945|ref|ZP_04397450.1| hypothetical protein VCF_003177 [Vibrio cholerae BX 330286]
gi|229511819|ref|ZP_04401298.1| hypothetical protein VCE_003228 [Vibrio cholerae B33]
gi|229518956|ref|ZP_04408399.1| hypothetical protein VCC_002983 [Vibrio cholerae RC9]
gi|229523980|ref|ZP_04413385.1| hypothetical protein VCA_001559 [Vibrio cholerae bv. albensis
VL426]
gi|229607490|ref|YP_002878138.1| hypothetical protein VCD_002402 [Vibrio cholerae MJ-1236]
gi|254226808|ref|ZP_04920380.1| hypothetical protein VCV51_1323 [Vibrio cholerae V51]
gi|254849050|ref|ZP_05238400.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255745285|ref|ZP_05419234.1| hypothetical protein VCH_001631 [Vibrio cholera CIRS 101]
gi|262156009|ref|ZP_06029129.1| hypothetical protein VIG_001228 [Vibrio cholerae INDRE 91/1]
gi|262167916|ref|ZP_06035616.1| hypothetical protein VIJ_001090 [Vibrio cholerae RC27]
gi|297579473|ref|ZP_06941401.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|9656503|gb|AAF95112.1| hypothetical protein VC_1964 [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121547490|gb|EAX57596.1| hypothetical protein VC274080_2004 [Vibrio cholerae 2740-80]
gi|121629097|gb|EAX61542.1| hypothetical protein VCV52_1929 [Vibrio cholerae V52]
gi|124113586|gb|EAY32406.1| hypothetical protein A55_2172 [Vibrio cholerae 1587]
gi|124122610|gb|EAY41353.1| hypothetical protein A51_B2032 [Vibrio cholerae MZO-3]
gi|125620655|gb|EAZ49017.1| hypothetical protein VCV51_1323 [Vibrio cholerae V51]
gi|126520012|gb|EAZ77235.1| hypothetical protein A5E_2262 [Vibrio cholerae B33]
gi|146316072|gb|ABQ20611.1| hypothetical protein VC0395_A1550 [Vibrio cholerae O395]
gi|227013861|gb|ACP10071.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|229337561|gb|EEO02578.1| hypothetical protein VCA_001559 [Vibrio cholerae bv. albensis
VL426]
gi|229343645|gb|EEO08620.1| hypothetical protein VCC_002983 [Vibrio cholerae RC9]
gi|229351784|gb|EEO16725.1| hypothetical protein VCE_003228 [Vibrio cholerae B33]
gi|229355450|gb|EEO20371.1| hypothetical protein VCF_003177 [Vibrio cholerae BX 330286]
gi|229370145|gb|ACQ60568.1| hypothetical protein VCD_002402 [Vibrio cholerae MJ-1236]
gi|254844755|gb|EET23169.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255737115|gb|EET92511.1| hypothetical protein VCH_001631 [Vibrio cholera CIRS 101]
gi|262023643|gb|EEY42344.1| hypothetical protein VIJ_001090 [Vibrio cholerae RC27]
gi|262030187|gb|EEY48831.1| hypothetical protein VIG_001228 [Vibrio cholerae INDRE 91/1]
gi|297537067|gb|EFH75900.1| conserved hypothetical protein [Vibrio cholerae RC385]
Length = 291
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 24/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +R L K G+ + + E+ + +
Sbjct: 92 GIQFMDILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQP 151
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ G + FD F+N AR Y + ++ ++ I
Sbjct: 152 QS---------MGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 202
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ V +++D + + + + + V D +I+ A + N ++++ G++
Sbjct: 203 REYVSPSLFEDLKAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 258
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
A + E D+W R++ N W+++ +
Sbjct: 259 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 290
>gi|84387756|ref|ZP_00990772.1| hypothetical protein V12B01_05945 [Vibrio splendidus 12B01]
gi|84377439|gb|EAP94306.1| hypothetical protein V12B01_05945 [Vibrio splendidus 12B01]
Length = 302
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 82/225 (36%), Gaps = 17/225 (7%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGK 64
IL+ I F F LRG+LG K G N++ G +
Sbjct: 92 GIQFMDILIMGLIAFLAFKFLRGMLGAKQGSMNQQNARGQQPAFGGMGQNKFEQPKQQPN 151
Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
+ ++ G + FD F+N +R Y + ++ +++
Sbjct: 152 VHNFEQAQPQSQGAAGGFGFGAQSDVPHNYPPGFDQAAFINGSREHYRTLQGAWNHNELN 211
Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
IE+ V +++D + + + + V D +I+ A + + ++++ G++
Sbjct: 212 TIEEYVSPSLFEDLKAERNKLDGD----QHTDVMYVDAEIVRADHDGSKAQLSLQFSGRY 267
Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
D + + + DIW R++ +N W+++ +
Sbjct: 268 ----RDTADGVEE-------DITDIWHLERDLTTNNAPWLIVGIQ 301
>gi|327484501|gb|AEA78908.1| hypothetical protein VCLMA_A1705 [Vibrio cholerae LMA3894-4]
Length = 291
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/223 (14%), Positives = 76/223 (34%), Gaps = 24/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +R L K G+ + + E+ + +
Sbjct: 92 GIQFMDILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQP 151
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ G + FD F+N AR Y + ++ ++ I
Sbjct: 152 QS---------MGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 202
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ V +++D + + ++ + D +I+ A + N ++++ G++
Sbjct: 203 REYVSPSLFEDLKAERANYEGDQHTNVMYV----DAEIVRADYDANRAQLSLQFSGRYRD 258
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
A + E D+W R++ N W+++ +
Sbjct: 259 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 290
>gi|229521878|ref|ZP_04411295.1| hypothetical protein VIF_002420 [Vibrio cholerae TM 11079-80]
gi|229340803|gb|EEO05808.1| hypothetical protein VIF_002420 [Vibrio cholerae TM 11079-80]
Length = 291
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 24/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +R L K G+ + + E+ + +
Sbjct: 92 GIQFMDILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQP 151
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ G + FD F+N AR Y + ++ ++ I
Sbjct: 152 QS---------MGGGFGSAAQSDVPHNYPVGFDRVAFVNGAREHYRILQGAWNHNQLETI 202
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ V +++D + + + + + V D +I+ A + N ++++ G++
Sbjct: 203 REYVSPSLFEDLKAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 258
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
A + E D+W R++ N W+++ +
Sbjct: 259 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 290
>gi|30250392|ref|NP_842462.1| hypothetical protein NE2471 [Nitrosomonas europaea ATCC 19718]
gi|30181187|emb|CAD86383.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
Length = 304
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 30/226 (13%), Positives = 69/226 (30%), Gaps = 22/226 (9%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I +F +R + G G + +SG
Sbjct: 97 GINMMDILVLVGIAAAIFFIIRMMRGSAGGRQTQRPMQYSGAGAGGMGGVPFPNRDTSAP 156
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ + DFD + FL +A+ S+ A+ + G + I
Sbjct: 157 AGGASSGYDRQSTSTDA--------PDIPADFDVESFLKQAKRSFIALQLAHDAGDLEEI 208
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
++ + + ++ R + + V D +++ + + N ++R
Sbjct: 209 RAYTTPDLFAEISKQVAER---GNMAQQTDVIFVDAALLDVTNQGNHAIASVRF------ 259
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
L + +IW +++ S+ W+L + +
Sbjct: 260 -----TGELRDTPNAQPEPFDEIWHVEKDLAASDSGWLLAGIQQAD 300
>gi|262404319|ref|ZP_06080874.1| hypothetical protein VOA_002310 [Vibrio sp. RC586]
gi|262349351|gb|EEY98489.1| hypothetical protein VOA_002310 [Vibrio sp. RC586]
Length = 290
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 35/223 (15%), Positives = 78/223 (34%), Gaps = 24/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +RG+L K G+ + + E+ + +
Sbjct: 91 GIQFMDILIMGLIAFVIFKLMRGLLASKQGSMNHSQQQPAYSGMNRTSFEQPNVHNFEQP 150
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ G + FD F+N AR Y + ++ ++ I
Sbjct: 151 QS---------MGGGFGSTAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 201
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ V +++D + + + + V D +I+ A + N ++++ G++
Sbjct: 202 REYVSPSLFEDLKAERANYAGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 257
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
A + E D+W R++ N W+++ +
Sbjct: 258 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 289
>gi|160877221|ref|YP_001556537.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
OS195]
gi|160862743|gb|ABX51277.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
OS195]
gi|315269425|gb|ADT96278.1| import inner membrane translocase subunit Tim44 [Shewanella baltica
OS678]
Length = 287
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 34/231 (14%), Positives = 85/231 (36%), Gaps = 27/231 (11%)
Query: 3 FIKMDSGDF---LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59
F+ + IL+ + F +F +R V+ K G ++ + +G+
Sbjct: 81 FMGGGFENIQIMDILIIGLLAFVLFKIVRTVMASKAGAQQRPAYAGAGQPNP-------- 132
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ + + + + N + FD FL AR+ Y+ + ++
Sbjct: 133 -NMQRQQTEQTGFATNTNSGSNGFGQATSAVPFDLPAGFDLPSFLEGARSHYKTLQLAWN 191
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
E + I++ V +Y + ++ + + + V D +++ A+ N ++++
Sbjct: 192 ENDLSKIQEYVSIELYNELSNQRRELVGD----QHTEVMFLDAELVRATHNANLAEVSVK 247
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G++ + E +IW RN+ +N W+++ +
Sbjct: 248 FSGRYRDT--------VEGVEEDIK---EIWHLERNVTQANSPWLIVGVEQ 287
>gi|148977909|ref|ZP_01814462.1| hypothetical protein VSWAT3_01775 [Vibrionales bacterium SWAT-3]
gi|145962855|gb|EDK28127.1| hypothetical protein VSWAT3_01775 [Vibrionales bacterium SWAT-3]
Length = 304
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 38/225 (16%), Positives = 76/225 (33%), Gaps = 17/225 (7%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGK 64
IL+ I F F LRG+LG K G N++ G +
Sbjct: 94 GIQFMDILIMGLIAFLAFKFLRGMLGAKQGSMNQQNARGQQPAFGGMGQNKFEQPTQQPN 153
Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
+ ++ G + FD F+N +R Y + ++ ++
Sbjct: 154 VHNFEQAQPQSQGTAGGFGFGAQSDVPHNYPPGFDQAAFINGSREHYRTLQGAWNHNELS 213
Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
IE+ V +++D S + + + V D +I+ A + + ++++
Sbjct: 214 TIEEYVSPSLFEDLKAERSKLDGD----QHTDVMYVDAEIVRADHDGSKAQLSLQF---- 265
Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
S I + DIW R++ N W+++ +
Sbjct: 266 -------SGRYRDSAEGIEEDITDIWHLERDLTTDNAPWLIVGIQ 303
>gi|153820281|ref|ZP_01972948.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|126509172|gb|EAZ71766.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
Length = 239
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 24/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +R L K G+ + + E+ + +
Sbjct: 40 GIQFMDILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQP 99
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ G + FD F+N AR Y + ++ ++ I
Sbjct: 100 QS---------MGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 150
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ V +++D + + + + + V D +I+ A + N ++++ G++
Sbjct: 151 REYVSPSLFEDLKAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 206
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
A + E D+W R++ N W+++ +
Sbjct: 207 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 238
>gi|153826379|ref|ZP_01979046.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|149739857|gb|EDM54048.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
Length = 223
Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 24/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +R L K G+ + + E+ + +
Sbjct: 24 GIQFMDILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQP 83
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ G + FD F+N AR Y + ++ ++ I
Sbjct: 84 QS---------MGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 134
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ V +++D + + + + + V D +I+ A + N ++++ G++
Sbjct: 135 REYVSPSLFEDLKAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYRD 190
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
A + E D+W R++ N W+++ +
Sbjct: 191 A--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 222
>gi|260767913|ref|ZP_05876847.1| hypothetical protein VFA_000962 [Vibrio furnissii CIP 102972]
gi|260615943|gb|EEX41128.1| hypothetical protein VFA_000962 [Vibrio furnissii CIP 102972]
gi|315179616|gb|ADT86530.1| Tim44-like domain family [Vibrio furnissii NCTC 11218]
Length = 291
Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 35/223 (15%), Positives = 76/223 (34%), Gaps = 24/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +RG+LG K G+ ++ G + +
Sbjct: 92 GIQFMDILIIGLIAFVIFKLMRGLLGAKQGSMNQ---------HQQQQPAFGGMNRNTFE 142
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ + + G + FD F+N AR Y + ++ ++ I
Sbjct: 143 QPNVHNFEQPQNSGGFGSQMQSDVPHNYPDGFDRVAFVNGAREHYRILQGAWNHNQLETI 202
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
E+ V +++D + + V D +I+ A + N ++++
Sbjct: 203 EEYVSPSLFEDLKAERA----KIDTDPQTDVMYVDAEIVRADYDANKAQLSLQF------ 252
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
++ + DIW R++ N W+++ +
Sbjct: 253 -----SGRYRDPSEDLEENIDDIWHLERDLTTPNAPWLIVGIQ 290
>gi|116749223|ref|YP_845910.1| import inner membrane translocase subunit Tim44 [Syntrophobacter
fumaroxidans MPOB]
gi|116698287|gb|ABK17475.1| import inner membrane translocase, subunit Tim44 [Syntrophobacter
fumaroxidans MPOB]
Length = 341
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 30/218 (13%), Positives = 66/218 (30%), Gaps = 15/218 (6%)
Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73
LL I L L ++ + + ++
Sbjct: 129 LLDLLIIGVGIYFLMKFLKRRREQQADTLLYSDSGMARPQQP------------YYGGGG 176
Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
E P + + +++ F+ + F ++ + I + + IE L+
Sbjct: 177 QPEYLPPADDVERGFQELRRFDPGFNEESFKETVQDLFFRIQAGWMNRSLDGIEGLLAPE 236
Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD-KD 192
+ F + + + K + + ++ EE Y+T+ + + D K
Sbjct: 237 MKAFFASEFDRLRRSGRINKLENIAVRKVEPSEVWQEEGKDYVTVLFTANLLDYTVDDKT 296
Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++ D K + WTF R+I W L +
Sbjct: 297 GQVVEGDKLNPVKFQEFWTFCRDIGTQ--RWQLTAINQ 332
>gi|51246964|ref|YP_066848.1| hypothetical protein DP3112 [Desulfotalea psychrophila LSv54]
gi|50878001|emb|CAG37841.1| hypothetical membrane protein [Desulfotalea psychrophila LSv54]
Length = 274
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 34/217 (15%), Positives = 83/217 (38%), Gaps = 13/217 (5%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
IL+ A +F+F + + + G Y + G+ D
Sbjct: 69 ILILAGGAYFLFRKFK----------QQSKGGKESAYTRPTATPSFGGGMNGGENTDVRP 118
Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
F + L++ + I + DF+ + F+ A + + I + + + LV +
Sbjct: 119 PPAPAFAGMSDLDEGIDQIKATDQDFEKEHFIQVASDVFFQIQAGWMRRDISSYRHLVGN 178
Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD-K 191
++ +++ + K+ + K + + +++I A + ++T+R + + + D K
Sbjct: 179 QLAEEYTSQFAKMKAAGRTNKLESIAVRSIEVIAAGSDGLEDFVTVRFIASLLDYTVDDK 238
Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
++ K + WT+ R++ + NW L
Sbjct: 239 TGDIVEGSNTAPVKFEEEWTWARSVKTN--NWKLEGI 273
>gi|99034421|ref|ZP_01314428.1| hypothetical protein Wendoof_01000767 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 198
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 38/176 (21%), Positives = 78/176 (44%), Gaps = 3/176 (1%)
Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
K+ + G+ + + I+ DF F+ + ++E
Sbjct: 13 KKLTNVLDVSRSGEDVVENIEGYIDSNDENSIKVTYKQILKKNKDFSISHFIEGSSIAFE 72
Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
I+ F +G + ++ L+D +Y +F + + RK +S +V I KI+ + +N
Sbjct: 73 LIIKCFNQGNLSQLKPLLDKDLYDNFAEKIKHRKE---VHESIIVSIVSQKILEIKLVKN 129
Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
V+I + + + I+ + + +IS KV D+W F +N+ S+P+W+L+S
Sbjct: 130 AVFIAVYFLSEQINFVKNNEGDIISGSTSTINKVEDVWQFKKNVNSSDPSWLLVSI 185
>gi|114332328|ref|YP_748550.1| import inner membrane translocase, subunit Tim44 [Nitrosomonas
eutropha C91]
gi|114309342|gb|ABI60585.1| import inner membrane translocase, subunit Tim44 [Nitrosomonas
eutropha C91]
Length = 304
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 29/225 (12%), Positives = 71/225 (31%), Gaps = 20/225 (8%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ A I +F +R + G + +SG
Sbjct: 95 GINMMDILVLAGIAAAIFFGIRMMRRSSGGGQAARPMQYSGAGAGHSMGGMPF------P 148
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
++D + + D + + FD FL A+ S+ + + G + I
Sbjct: 149 RQDTATPSGGVASGVGGQSAANTDALDIPAGFDVDSFLKNAKGSFITLQLAHDSGDLEEI 208
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
++ + + ++ R + + V + +++ + ++N ++R
Sbjct: 209 RAFTTPELFAEISKQITER---GNVTQQTDVTHVNAALLDITTQDNHAVASVRF------ 259
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
L + +IW +++ S+ W+L +
Sbjct: 260 -----TGELREAPGAQLEPFDEIWHVEKDLVASDSAWLLSGIQQA 299
>gi|118581965|ref|YP_903215.1| import inner membrane translocase, subunit Tim44 [Pelobacter
propionicus DSM 2379]
gi|118504675|gb|ABL01158.1| import inner membrane translocase, subunit Tim44 [Pelobacter
propionicus DSM 2379]
Length = 317
Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats.
Identities = 28/222 (12%), Positives = 70/222 (31%), Gaps = 21/222 (9%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
F I+L A + ++ + + K+ + SG +
Sbjct: 116 MFEIILLAGL-GYLIYRF--IKKKRELSLATPSGQGGYQREAV---------------AP 157
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
P + + + + + FD F + + + I ++ + + L
Sbjct: 158 VSYGYQAEVPASSDVESGISHVRQMDPTFDESSFNDAVMDIFFRIQGAWMNRDLAPVSSL 217
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+ + + F + + + + + + + ++I E Y+T + +
Sbjct: 218 LTDEMKRIFQEDVDRLLRDRQVNRLENIAVRKVEITEVWQESGQDYVTALVHANLFDYTT 277
Query: 190 D-KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
D ++S K + WTF R++ N W L +
Sbjct: 278 DDATGAVVSGSKSEPVKFEEYWTFTRSVG--NNPWRLSAISQ 317
>gi|253701845|ref|YP_003023034.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M21]
gi|251776695|gb|ACT19276.1| import inner membrane translocase subunit Tim44 [Geobacter sp. M21]
Length = 321
Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats.
Identities = 31/220 (14%), Positives = 74/220 (33%), Gaps = 18/220 (8%)
Query: 12 LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71
ILL A I ++ + V K+ +P + + + +I + + +
Sbjct: 118 DILLLAGI-GYLIYR--MVKKKR----EPEADLYGQR--------PNVIDIDRYQAGQGT 162
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
P + + + I + FD F + + + I ++ + + L+
Sbjct: 163 ARPLGNQPAQDEVEEGLSHIRQMDPSFDEARFNDTVMDMFFKIQGAWMNRDLSGVSALLT 222
Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD- 190
+ + ++ + + + +++I A E +IT + + + D
Sbjct: 223 DEMRAAMQGDVDQLLREKRVNRLENIAVRNVEISEAWQESGKDFITALVYANLLDYTTDD 282
Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++S K + WTF R + N W L +
Sbjct: 283 ATGAVVSGSKTDPVKFEEYWTFTRTVG--NNPWKLSAINQ 320
>gi|260878333|ref|ZP_05890688.1| import inner membrane translocase, subunit Tim44 [Vibrio
parahaemolyticus AN-5034]
gi|308092753|gb|EFO42448.1| import inner membrane translocase, subunit Tim44 [Vibrio
parahaemolyticus AN-5034]
Length = 287
Score = 105 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 23/221 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +RG+LG K G+ + SK ++ + +
Sbjct: 90 GIQFMDILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNASKFEQPNMQNFEQQP 149
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ T + FD F+N +R Y + ++ ++ I
Sbjct: 150 NTN--------AGGFTGFGAQTDVPHNYPPGFDQAAFINGSREHYRILQGAWNHNQLDTI 201
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
E+ V +++D + + + + V D +I+ A + N ++++ G++
Sbjct: 202 EEYVSPSLFEDLKAERAKLEGE----QHTDVMYVDAEIVRAEYDANKAQLSLQFSGRYRD 257
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
A+ E DIW R++ N W+++
Sbjct: 258 AA--------EGVEEDIE---DIWHLERDLTVPNAPWLIVG 287
>gi|261314892|ref|ZP_05954089.1| import inner membrane translocase subunit Tim44 [Brucella
pinnipedialis M163/99/10]
gi|261303918|gb|EEY07415.1| import inner membrane translocase subunit Tim44 [Brucella
pinnipedialis M163/99/10]
Length = 168
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
+FLQLR VLG++TGNEKP + S + + +++L + + + +I+
Sbjct: 19 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 78
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY
Sbjct: 79 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 138
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165
+ F ++ R+ + V+SS VGID I
Sbjct: 139 EGFVAAIDEREKRGETVRSSFVGIDKAGIA 168
>gi|262276258|ref|ZP_06054067.1| hypothetical protein VHA_003243 [Grimontia hollisae CIP 101886]
gi|262220066|gb|EEY71382.1| hypothetical protein VHA_003243 [Grimontia hollisae CIP 101886]
Length = 295
Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/225 (15%), Positives = 74/225 (32%), Gaps = 24/225 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGN-EKPFSGFFSGKYVFSKRDERGIITLGKG 65
L+ A I F +F + ++ K G+ +P ++G K+ G
Sbjct: 94 GFQVMDFLIIALIAFVLFKIFKSLMAAKNGSINRPHQQAYAGNPSPQKK--------GYY 145
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
++ G + +FD F+N AR Y + ++ ++
Sbjct: 146 HEQPQFRESAATSSTGGFGAVNNDVPFNFPPNFDMSAFVNGAREHYRTLQGAWNHNELET 205
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
I++ V +Y D + + + V D +I+ A + ++++
Sbjct: 206 IQEYVTPELYNDLAEERRKLDGE----QHTEVMYVDAEIVRADYDGKRAQLSLQF----- 256
Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
I + DIW R++ N W+++ +
Sbjct: 257 ------SGRYCDRHEGIEEDITDIWHLERDMTLPNAPWLIVGIQA 295
>gi|254707406|ref|ZP_05169234.1| calcium-binding EF-hand [Brucella pinnipedialis M163/99/10]
Length = 164
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFF----SGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
+FLQLR VLG++TGNEKP + S + + +++L + + + +I+
Sbjct: 15 AVIIFLQLRNVLGRRTGNEKPPFDPYASARSSDAAPAGGEPDNVVSLPRRANEKDYTAID 74
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
++ P G+ +N+ +R I +V F+P F++ + +YE IV SF +G ++ L+ VY
Sbjct: 75 KIAPAGSPVNEGLRAIYAVDPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVY 134
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165
+ F ++ R+ + V+SS VGID I
Sbjct: 135 EGFVAAIDEREKRGETVRSSFVGIDKAGIA 164
>gi|149911555|ref|ZP_01900169.1| hypothetical protein PE36_11757 [Moritella sp. PE36]
gi|149805400|gb|EDM65410.1| hypothetical protein PE36_11757 [Moritella sp. PE36]
Length = 277
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 25/224 (11%), Positives = 78/224 (34%), Gaps = 30/224 (13%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
+++ A + F +F +G++ S++ + +
Sbjct: 84 GFQFMDMIIMAGVAFLLFRLFKGMM---------------QAKAASQQGSPQTASGPAFR 128
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
++ D+ G ++ DFD FL+ AR+ Y+ + ++ E + I
Sbjct: 129 QEAQPDATFNTASQGGFAGSSNDVPFNLPADFDLTSFLSGARSHYKTLQKAWNENDLETI 188
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
++ V +Y + + + + V D++++ A + ++++
Sbjct: 189 QEYVSIELYNELRVQRKELEGE----QHTEVMFLDVELVRAESTASLSQVSVKF------ 238
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ ++ + ++W R++ ++ W++ +
Sbjct: 239 -----NGRYRDGHEDVEADINEVWHLERDLTQTDAPWLITGIEQ 277
>gi|85860629|ref|YP_462831.1| transporter [Syntrophus aciditrophicus SB]
gi|85723720|gb|ABC78663.1| transporter [Syntrophus aciditrophicus SB]
Length = 338
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 71/221 (32%), Gaps = 15/221 (6%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
ILL I + ++ L K+ + + S + R G
Sbjct: 130 MDILLIGAILYGIYW----FLKKR----RQAATAMSSPMAYGGMANRDAFNPGSYAPP-- 179
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+ G + I + FD + F + + + I ++ + + L+
Sbjct: 180 --IQDIPPASGYEGGGGLDAIRQMDYQFDERRFKDSVLDHFFQIQGAWAGRDMSGVRNLL 237
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
V + T ++ ++ K + + + I A E +IT++ + + D
Sbjct: 238 TDEVCKTIQQDAETLRAKKRINKLDNIAVRSVDITEAWQEGGQDFITVKFYANLLDYTID 297
Query: 191 -KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++S K ++ WTF R N W L +
Sbjct: 298 EASGEVVSGSRTEPVKFVEFWTFTRPTG--NNPWRLSAVNQ 336
>gi|197117400|ref|YP_002137827.1| transport protein [Geobacter bemidjiensis Bem]
gi|197086760|gb|ACH38031.1| transport protein, Tim44-like domain, putative [Geobacter
bemidjiensis Bem]
Length = 322
Score = 103 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 31/220 (14%), Positives = 68/220 (30%), Gaps = 18/220 (8%)
Query: 12 LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71
ILL A I + ++ R V K+ +I + +
Sbjct: 119 DILLLAGIAYLIY---RMVKKKR------------EPETDVYGQRPNVIDIDHYQVSQGS 163
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
+ + + I + FD F + + + I ++ + + L
Sbjct: 164 AQSLGYQQAQDEVEEGLSHIRQMDPSFDEGRFNDAVMDMFFKIQGAWMNRDLSGVSALFT 223
Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD- 190
+ + +++ + + + +++I A E +IT I + + D
Sbjct: 224 DEMRAAMQGDVDQLLRDKRVNRLENIAVRNVEISEAWQESGKDFITALIYANLLDYTTDD 283
Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++S K + WTF R + N W L +
Sbjct: 284 ATGAVVSGSKADPVKFEEYWTFTRTVG--NNPWKLSAINQ 321
>gi|189236504|ref|XP_975336.2| PREDICTED: similar to mitochondrial import inner membrane
translocase subunit tim44 [Tribolium castaneum]
Length = 424
Score = 103 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 65/176 (36%), Gaps = 3/176 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ + D + I T L++ + +I + FD K FL +
Sbjct: 239 ESDNPVIRASRLLTDKVSDIMGGLFQKTELSETLTEICKIDPTFDTKKFLKQCETDIIPN 298
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I+++ G + ++ + F + + S ++ +D++ ++ + E
Sbjct: 299 ILEAMTRGDLEVLKDWCHEGPFNLFAIPIKEAYKKGYKIDSKVLDVDNVDLVMGKVMEQG 358
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ I Q + D + ++ DPE +V +W R+I +P W L+
Sbjct: 359 PVLIISFTSQQMMCVRDPNGNVVEGDPEKVMRVAYVWVLCRDISEPDPRAAWRLLD 414
>gi|270005995|gb|EFA02443.1| hypothetical protein TcasGA2_TC008130 [Tribolium castaneum]
Length = 421
Score = 103 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 65/176 (36%), Gaps = 3/176 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ + D + I T L++ + +I + FD K FL +
Sbjct: 236 ESDNPVIRASRLLTDKVSDIMGGLFQKTELSETLTEICKIDPTFDTKKFLKQCETDIIPN 295
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I+++ G + ++ + F + + S ++ +D++ ++ + E
Sbjct: 296 ILEAMTRGDLEVLKDWCHEGPFNLFAIPIKEAYKKGYKIDSKVLDVDNVDLVMGKVMEQG 355
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ I Q + D + ++ DPE +V +W R+I +P W L+
Sbjct: 356 PVLIISFTSQQMMCVRDPNGNVVEGDPEKVMRVAYVWVLCRDISEPDPRAAWRLLD 411
>gi|186475144|ref|YP_001856614.1| import inner membrane translocase subunit Tim44 [Burkholderia
phymatum STM815]
gi|184191603|gb|ACC69568.1| import inner membrane translocase subunit Tim44 [Burkholderia
phymatum STM815]
Length = 331
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 29/229 (12%), Positives = 63/229 (27%), Gaps = 25/229 (10%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F M + +I L AF+ ++ R +G+K + P S
Sbjct: 125 FAGMMANMIVIALIAFVAIWLI---RKFVGRKRNAQTPAYAGGSPTLNAGGTGYS----- 176
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
+ + + +V FD + FL A+ + + ++ G
Sbjct: 177 QEPRYTAPPTGSYLGPQGNPLTTPDIAATPAVPAGFDSEAFLRNAKVYFVRLQAAWDAGN 236
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
+ I + + F + S + V D ++ + ++R
Sbjct: 237 MDDIREFTTPEM---FAEVRVDLSSRGAEKNQTDVVKLDADLLGVEDRGSEYLASVRFH- 292
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
L+ + +IW + W+L +
Sbjct: 293 ----------GLIRETVGGSAEPFEEIWNLSKRTGEG---WLLAGIQQA 328
>gi|222054950|ref|YP_002537312.1| import inner membrane translocase subunit Tim44 [Geobacter sp.
FRC-32]
gi|221564239|gb|ACM20211.1| import inner membrane translocase subunit Tim44 [Geobacter sp.
FRC-32]
Length = 321
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 30/221 (13%), Positives = 70/221 (31%), Gaps = 20/221 (9%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
F ILL A I ++ + K Y + + + G
Sbjct: 119 FEILLLAGI-GYLIYR----------FVKKNRETAPATYGQTGYQGGTVTPISSGS---- 163
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+ P L + I + FD + F + + + + ++ + + +
Sbjct: 164 --GYEAVQPASDDLTTGLSHIRQMDPSFDEQRFNDGVMDMFFKVQGAWMNRDLSPVNGIF 221
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
+ + + + + + + + + +++I E +IT +I + + D
Sbjct: 222 TDEMRRILQEDVERLLRDRQVNRLENIAVRNVEIAEVWQESGQDFITAQIYANLLDYTTD 281
Query: 191 KD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++S K + WTF R + N W L +
Sbjct: 282 DTTGAVVSGSKTDPVKFEEYWTFTRPVG--NNQWRLSAINQ 320
>gi|148262974|ref|YP_001229680.1| import inner membrane translocase, subunit Tim44 [Geobacter
uraniireducens Rf4]
gi|146396474|gb|ABQ25107.1| import inner membrane translocase, subunit Tim44 [Geobacter
uraniireducens Rf4]
Length = 314
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 32/221 (14%), Positives = 70/221 (31%), Gaps = 21/221 (9%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
F ILL A I ++ + V K+ N G
Sbjct: 113 FEILLLAGI-GYLIYRF--VKKKREAN---------------AAYSSYGGAYQGGTVTPV 154
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
P + + + + FD F + +++ I ++ + + L+
Sbjct: 155 SGGYLGNDPQPDDVAAGLAHVRQMDASFDENRFNDLVMDNFFKIQGAWMNRDLTPVTGLL 214
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
+ + F + L +++ + + + +++I E +IT I + + D
Sbjct: 215 TDEMKRIFQEDLDRLLRDKQVNRLENIAVRNVEIAEVWQESGQDFITALIYANLLDYTTD 274
Query: 191 -KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+++S K + WT R + N W L +
Sbjct: 275 DATGVVVSGSKTEPVKFEEYWTLTRPVG--NNPWRLSAINQ 313
>gi|118579223|ref|YP_900473.1| import inner membrane translocase, subunit Tim44 [Pelobacter
propionicus DSM 2379]
gi|118501933|gb|ABK98415.1| import inner membrane translocase, subunit Tim44 [Pelobacter
propionicus DSM 2379]
Length = 314
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 33/217 (15%), Positives = 67/217 (30%), Gaps = 20/217 (9%)
Query: 15 LFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSI 74
L A I ++ + K + + + G
Sbjct: 116 LLAGIA-YLIYR----------FVKKKQPELAPGGYNQAGYQATSVPPPYGAA------Y 158
Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134
E G + + I + FD F + A +++ I ++ + + L+ +
Sbjct: 159 QESQHDGQGADGGLDHIRQMDPGFDENRFNDMAMDTFFKIQGAWMNRDLAPVSTLLTDEM 218
Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD-KDN 193
+ F + L + + + + + I A E YIT I + + D
Sbjct: 219 RRVFQEDLDGLLRERRTNRLENIAVRKVDISEAWQESGQDYITTLIYANLLDYTTDDASG 278
Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+++S K + WTF R I + W L +
Sbjct: 279 IVVSGSKTDPVKFEEYWTFTRPIGGT--PWRLSAIAQ 313
>gi|114775481|ref|ZP_01451049.1| import inner membrane translocase, subunit Tim44 [Mariprofundus
ferrooxydans PV-1]
gi|114553592|gb|EAU55973.1| import inner membrane translocase, subunit Tim44 [Mariprofundus
ferrooxydans PV-1]
Length = 289
Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats.
Identities = 30/229 (13%), Positives = 72/229 (31%), Gaps = 31/229 (13%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F ++ I++ + +F LR K++ S + +
Sbjct: 91 FEGINF--LDIVMIGAVLALLFFFLR----KRS-----------TPAQPSYAGGQPMHDY 133
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
G+ D D + E + +R D D K F+ A+ Y + ++ G
Sbjct: 134 GQSYTTDVEDQVYEENTPRDPVGTALR------PDIDEKHFIPAAKQIYVRMQKAWDNGD 187
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
I K + + + + + V + ++ ++ +E + ++ +
Sbjct: 188 TEDIRKFCTAEIAERIASDM-----KPGTENRTEVATLNAELADSWVESDLEWVAVNFTA 242
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ D + + +V ++W F +P W L +
Sbjct: 243 MLREQTLDASGTTLD---DQTAEVNEVWIFQHAPKSDDPTWYLAGIQQA 288
>gi|295675463|ref|YP_003603987.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
CCGE1002]
gi|295435306|gb|ADG14476.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
CCGE1002]
Length = 334
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 29/230 (12%), Positives = 66/230 (28%), Gaps = 23/230 (10%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F M + +I A I V +R G+K +P + RG +
Sbjct: 126 FAGMFANVIVI---ALIAMVVIWLIRRFTGRKRDAAQPAYA-----GTAPSLNTRGTDYI 177
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
+ + + SV FD + FL A+ + + ++ G
Sbjct: 178 QEPRYTAPPTGSYLEPQGNPLTTPSLGATPSVPAGFDSEAFLRNAKVYFVRLQAAWDVGN 237
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
+ I + + F + + + V + +++ + ++R
Sbjct: 238 IDDIREFTTPEM---FAEVRVDLTARGTQQNQTDVVQLNAELLGVEERATEYFASVRF-- 292
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
L+ + +++W + W+L + E
Sbjct: 293 ---------SGLIREAPGAAAEPFVEVWNLTKANRAGEG-WLLAGIQQVE 332
>gi|54309778|ref|YP_130798.1| hypothetical protein PBPRA2617 [Photobacterium profundum SS9]
gi|46914216|emb|CAG20996.1| conserved hypothetical protein [Photobacterium profundum SS9]
Length = 289
Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats.
Identities = 29/227 (12%), Positives = 75/227 (33%), Gaps = 31/227 (13%)
Query: 7 DSGDFLILLFAFITFFVFLQL---RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
IL+F I F +F RG G TG+ + ++G + +++ ++
Sbjct: 91 GIQFMDILIFGLIAFVIFKLFKTMRGAKGTPTGHREAYAGNSPQQQNNTQQRQQAPEMNA 150
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
++ + +++ ++ +F+ FL+ AR+ Y + ++ ++
Sbjct: 151 APQQSGYASTDSDVP-------------FNLPPNFNMNAFLSGARDHYRILQGAWNHNEL 197
Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
I + V + D + + + + +T +
Sbjct: 198 DKIREYVSPALLADLTAERAKLEGEQHTEVMYV---------------DTEMVRADFDAN 242
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
S + E + D+W R++ N W+++ +
Sbjct: 243 LAQLSIQFSGRYKDRNEEHEADITDVWHLERDLRTPNAPWLIVGIQA 289
>gi|157133678|ref|XP_001662961.1| mitochondrial import inner membrane translocase subunit tim44
[Aedes aegypti]
gi|108870735|gb|EAT34960.1| mitochondrial import inner membrane translocase subunit tim44
[Aedes aegypti]
Length = 433
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 30/182 (16%), Positives = 65/182 (35%), Gaps = 3/182 (1%)
Query: 52 SKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY 111
+ + D + + T L++ + +I + +FD K FL + N
Sbjct: 245 QYDESENPVIRASRLLTDKVSDVMGNLFSKTELSETLTEICKIDPNFDQKQFLRDCENDI 304
Query: 112 -EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE 170
I+++ G + ++ Y +S + + S ++ I+++ + +
Sbjct: 305 IPNILEAMIRGDLEVLKDWCFESTYNIIATPISQAQKLGYYLDSKVLDIENVDLAMGKVM 364
Query: 171 ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIST 228
E + I Q I D ++ DPE + +W R+ NP W L+
Sbjct: 365 EQGPVLIITFQTQQIMCVRDSKGNVVEGDPEKVMRCNYVWVLCRDPNDLNPKSAWRLMEL 424
Query: 229 KL 230
+
Sbjct: 425 QA 426
>gi|157118792|ref|XP_001653263.1| mitochondrial import inner membrane translocase subunit tim44
[Aedes aegypti]
gi|108875602|gb|EAT39827.1| mitochondrial import inner membrane translocase subunit tim44
[Aedes aegypti]
Length = 433
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 3/182 (1%)
Query: 52 SKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY 111
+ + D + + T L++ + +I + +FD K FL + N
Sbjct: 245 QYDESENPVIRASRLLTDKVSDVMGNLFSKTELSETLTEICKIDPNFDQKQFLRDCENDI 304
Query: 112 -EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE 170
I+++ G + ++ Y +S + + S ++ I+++ + +
Sbjct: 305 IPNILEAMIRGDLEVLKDWCFESTYNIIATPISQAQKLGYYLDSKVLDIENVDLAMGKVM 364
Query: 171 ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIST 228
E + I Q I D +I DPE + +W R+ NP W L+
Sbjct: 365 EQGPVLIITFQTQQIMCVRDSKGNVIEGDPEKVMRCNYVWVLCRDPNDLNPKSAWRLMEL 424
Query: 229 KL 230
+
Sbjct: 425 QA 426
>gi|90410802|ref|ZP_01218817.1| hypothetical protein P3TCK_27197 [Photobacterium profundum 3TCK]
gi|90328433|gb|EAS44731.1| hypothetical protein P3TCK_27197 [Photobacterium profundum 3TCK]
Length = 300
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/227 (12%), Positives = 75/227 (33%), Gaps = 31/227 (13%)
Query: 7 DSGDFLILLFAFITFFVFLQL---RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
IL+F I F +F RG G TG+ + ++G + +++ ++
Sbjct: 102 GIQFMDILIFGLIAFVIFKLFKTMRGAKGTPTGHREAYAGNSPQQQNNTQQRQQASEMNA 161
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
++ + +++ ++ +F+ FL+ AR+ Y + ++ ++
Sbjct: 162 APQQSGYASTDSDVP-------------FNLPPNFNMNAFLSGARDHYRILQGAWNHNEL 208
Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
I + V + D + + + + +T +
Sbjct: 209 DKIREYVSPALLADLTAERAKLEGEQHTEVMYV---------------DTEMVRADFDAN 253
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
S + E + D+W R++ N W+++ +
Sbjct: 254 LAQLSIQFSGRYKDRNEEHEADITDVWHLERDLRTPNAPWLIVGIQA 300
>gi|156541363|ref|XP_001599273.1| PREDICTED: similar to mitochondrial import inner membrane
translocase subunit tim44, partial [Nasonia vitripennis]
Length = 400
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/193 (15%), Positives = 63/193 (32%), Gaps = 3/193 (1%)
Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF 98
K + + + D + I T L++ + +I + F
Sbjct: 199 KNPYVNKVLDWKIKYEESENPVVRASRLLTDKVSDIFGGLFQKTELSETLTEICKLDPSF 258
Query: 99 DPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157
D FL + ++++ G + ++ Y L + S ++
Sbjct: 259 DKIKFLKDCETDIIPNVLEAMIRGDLEILKDWCHEAPYNVIAQPLQQAFKLGYRLDSKVL 318
Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217
ID++ ++ + + + I Q I D ++ DPE +V +W R+
Sbjct: 319 DIDNVDLLMGKVMDQGPVLAISFTSQQIMCVRDAKGNVVEGDPEKVMRVNYVWVLCRDPA 378
Query: 218 PSNP--NWVLIST 228
NP W L+
Sbjct: 379 ELNPKSAWRLLEI 391
>gi|170691438|ref|ZP_02882603.1| import inner membrane translocase subunit Tim44 [Burkholderia
graminis C4D1M]
gi|170143643|gb|EDT11806.1| import inner membrane translocase subunit Tim44 [Burkholderia
graminis C4D1M]
Length = 332
Score = 99.6 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 28/229 (12%), Positives = 63/229 (27%), Gaps = 20/229 (8%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F + +I L A I ++ R LG+K +P +
Sbjct: 121 FAGAMANIIVIALLAMIGIWLI---RRFLGRKRDTSQPAYAG--HSPSLNSGATGYTQEP 175
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
+ + + SV FD + FL A+ + + ++ G
Sbjct: 176 QEPRYTAPPTGSYLEPQGNPLTTPSVNATPSVPAGFDSEAFLRNAKVYFVRLQAAWDVGN 235
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
+ I + + F + S + V + ++ N + ++R
Sbjct: 236 IDDIREFTTPEM---FAEVRVDLSSRGAGTNQTDVVQLNADLLGVEERANEYFASVRF-- 290
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
L+ + +++W + W+L +
Sbjct: 291 ---------SGLIREAPGAAAEPFVEVWNLSK-ANRPGEGWLLAGIQQV 329
>gi|328952110|ref|YP_004369444.1| import inner membrane translocase subunit Tim44 [Desulfobacca
acetoxidans DSM 11109]
gi|328452434|gb|AEB08263.1| import inner membrane translocase subunit Tim44 [Desulfobacca
acetoxidans DSM 11109]
Length = 333
Score = 99.6 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/224 (15%), Positives = 73/224 (32%), Gaps = 23/224 (10%)
Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
G F IL+ I ++ +L L ++ + + G
Sbjct: 130 GLFEILIIGGI-LYLGYRL---LNRRR----------------QQAHQSGGGGGKTYGAT 169
Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
L + I + F+ F ++ + + ++ +V ++
Sbjct: 170 LLYPEPAAPQLPAFDLQTELEPIRRMDPSFNEATFKEMVQDVFFKLQGAWMRQEVSSMRD 229
Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
L Y + L K+ + K + + ++I A E+ +IT+ + + +
Sbjct: 230 LTTPEFYDILDKELQELKAKGQINKLENIAVRQVEISEAWQEQGQDFITVGFLANLLDYT 289
Query: 189 YDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
D N +++ K + WTFVR I N W L +
Sbjct: 290 VDAGTNQVLAGSDTEPVKFEEYWTFVRPIG--NGPWKLTAITQP 331
>gi|209521830|ref|ZP_03270508.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
H160]
gi|209497734|gb|EDZ97911.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
H160]
Length = 333
Score = 99.2 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 31/230 (13%), Positives = 64/230 (27%), Gaps = 23/230 (10%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F M + +I A I V +R G+K +P + +
Sbjct: 125 FAGMLANVIVI---ALIAIVVIWLIRRFTGRKRDATQP-----DYAGTAPSLNANSTGYM 176
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
+ + + SV FD + FL A+ + + ++ G
Sbjct: 177 QEPRYTAPPTGAYLEPQGNPLTTPSIGAPPSVPAGFDSEAFLRNAKVYFVRLQAAWDAGN 236
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
V I + + F + S + V + +++ N + ++R
Sbjct: 237 VEDIREFTTPEM---FAEVRVDLASRGTQPNQTDVVQLNAELLGVEERANESFASVRF-- 291
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
L+ +++W R W+L + E
Sbjct: 292 ---------SGLIREEPGAAAEPFVEVWNLSRANRAGEG-WLLAGIQQVE 331
>gi|156973734|ref|YP_001444641.1| hypothetical protein VIBHAR_01439 [Vibrio harveyi ATCC BAA-1116]
gi|156525328|gb|ABU70414.1| hypothetical protein VIBHAR_01439 [Vibrio harveyi ATCC BAA-1116]
Length = 290
Score = 99.2 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 35/223 (15%), Positives = 78/223 (34%), Gaps = 23/223 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +RG+LG K G+ + SK ++ + +
Sbjct: 90 GIQFMDILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNFEQQP 149
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ + FD F+N +R Y + ++ ++H I
Sbjct: 150 NTN--------AGGFGGFGSQTDIPHNYPPGFDQAAFINGSREHYRILQGAWNHNQLHTI 201
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
E+ V +++D + + + V D +I+ A + + ++++
Sbjct: 202 EEYVSPSLFEDLKAERAKLDGE----QHTDVMYVDAEIVRADYDASKAQLSLQF------ 251
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
++ I + DIW R++ N W+++ +
Sbjct: 252 -----SGRYRDAEEGIEEDIEDIWHLERDLTVPNAPWLIVGIQ 289
>gi|330446574|ref|ZP_08310226.1| tim44-like domain protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328490765|dbj|GAA04723.1| tim44-like domain protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 290
Score = 99.2 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 33/227 (14%), Positives = 81/227 (35%), Gaps = 30/227 (13%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVL---GKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
IL+ I F +F + + G G+ + ++G + ++ R
Sbjct: 91 GIQFMDILIIGVIAFVLFKLFKAMRANKGTPMGHRESYAGNSPQQPQQPQQQYRQAAGAQ 150
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
+ +S + P + +F+ FL+ +R+ Y I ++ ++
Sbjct: 151 SQPQNGGFESTDSDVPFN------------LPPNFNMNAFLSGSRDHYRIIQGAWNHNEL 198
Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
I + V ++ D + + + V D +++ A + NT ++I+ G+
Sbjct: 199 EKIREYVSPALFADLEAERAKLSGE----QHTEVMYVDAELVRADYDANTAQLSIKFSGR 254
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ + + E D+W R++ N W+++ +
Sbjct: 255 YKDS--------VEGVEEDI---TDVWHLERDLKTPNAPWLIVGIQA 290
>gi|256113826|ref|ZP_05454619.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis bv. 3 str. Ether]
gi|265995175|ref|ZP_06107732.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis bv. 3 str. Ether]
gi|262766288|gb|EEZ12077.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis bv. 3 str. Ether]
Length = 342
Score = 98.8 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 64/225 (28%), Gaps = 10/225 (4%)
Query: 10 DFLILL-FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
F ++L A I V +R ++ +G + + + +
Sbjct: 126 MFGLILQVAVIALIVMFVMRMFANRRQ-TAAAGAGHAGAQPFGASQPFGSAKSASGQGSF 184
Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
F V+ D D F I + A+ K
Sbjct: 185 SGRTPSVNPFETKQAAAPVVEDEPMDVGQEDLDRF----EQMLVDIQGGYGREDYAALRK 240
Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
L + L S K + V + + A E N Y T+ + I
Sbjct: 241 LTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAIDVM 300
Query: 189 YDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
D+ ++ +P + +++WTF R W L + + E
Sbjct: 301 VDRTSGAVVEGNPNEPVESVELWTFTR---TDGGAWQLAAIQGTE 342
>gi|82702119|ref|YP_411685.1| import inner membrane translocase, subunit Tim44 [Nitrosospira
multiformis ATCC 25196]
gi|82410184|gb|ABB74293.1| import inner membrane translocase, subunit Tim44 [Nitrosospira
multiformis ATCC 25196]
Length = 295
Score = 98.8 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 26/225 (11%), Positives = 73/225 (32%), Gaps = 22/225 (9%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
+L+ A + +F +R + + + + + + T G
Sbjct: 92 GINMMDVLMLAALIGGIFFVMRMLRKPRQEHSARPMQYSGMQGTSTDHGVTPGATAATGS 151
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ + + P+ N + DF + FL A+ S+ + + ++ I
Sbjct: 152 APETTPRASAVAPVSGTGN--------IPADFQVEPFLRNAKTSFIRLQAANDARDLNDI 203
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ +Y + + ++ R + + V + +++ E++ ++R
Sbjct: 204 REYTTPEMYAEISMQINER---GNEPQRTDVLAINAQLLEVVTEKDMAIASVRF------ 254
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ L S +IW +++ + W+L +
Sbjct: 255 -----NGQLRESPQSTPEAFDEIWHVQKDLKDPDAVWLLAGIQQV 294
>gi|241834608|ref|XP_002415012.1| mitochondrial import inner membrane translocase, subunit TIM44,
putative [Ixodes scapularis]
gi|215509224|gb|EEC18677.1| mitochondrial import inner membrane translocase, subunit TIM44,
putative [Ixodes scapularis]
Length = 415
Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats.
Identities = 26/193 (13%), Positives = 60/193 (31%), Gaps = 3/193 (1%)
Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
E + + D + I T L++V+ +I +
Sbjct: 213 ENNPYVHKFFDLKTQYDESDNPLVRASRTLTDKVSDIFGGLFQKTELSEVLTEICKMDPA 272
Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
FD +FL + ++++ G + + + + + S +
Sbjct: 273 FDKNEFLRQCETDIIPNVLEAIVRGDLEILRDWCHDAPFNVLSTPIKQAAQLGYRFDSKV 332
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
+ + ++ + I E + I Q I + ++ DPE ++ W R+
Sbjct: 333 LDVTNVDLAMGKIMEQGPVLIITFQSQQIMVVRNAKGDVVEGDPEKIMRMHYAWVLCRDQ 392
Query: 217 PPSNP--NWVLIS 227
+P W L+
Sbjct: 393 NELDPRAAWKLMD 405
>gi|239832154|ref|ZP_04680483.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
intermedium LMG 3301]
gi|239824421|gb|EEQ95989.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
intermedium LMG 3301]
Length = 345
Score = 98.5 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 66/228 (28%), Gaps = 11/228 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M + + A I FV +R ++ + + K L
Sbjct: 128 MFGLILQVAVIALIAMFV---MRMFANRRQPAAAGAGNAGAQPFGAPKSAAPQAGPLAGF 184
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
+ + E + D D F + ++ A
Sbjct: 185 GGRTPSVNPFETKQEAAPAAPAVEDEPMDVGQEDLDRF----EQMLSEVQTAYGREDYAA 240
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
+ KL + L S+ + V + + A E N Y T+ I I
Sbjct: 241 LRKLTTPEAMSYLAEELGEIASSGMRNEVKDVKLLQGDVSEAWREGNAEYATVAIRYSAI 300
Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
D++ ++ +P + +++WTF R + W L + + E
Sbjct: 301 DVMLDRNTGTVVEGNPNEPVESVELWTFTR---QDSGEWQLAAIQGTE 345
>gi|242279221|ref|YP_002991350.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
salexigens DSM 2638]
gi|242122115|gb|ACS79811.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
salexigens DSM 2638]
Length = 312
Score = 98.5 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 35/227 (15%), Positives = 73/227 (32%), Gaps = 20/227 (8%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGK----KTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
+ LI+ F F + R G + GN + + + D
Sbjct: 101 NLLIIGLLVYLGFKFFKSRS-RGTDDMYRQGNYQRGPDYSQPNQNNTNADPYARREQTAQ 159
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
D+L S P + V++ FD ++FL+ A+ Y + S+ +
Sbjct: 160 NAWDHLSSKPSSQPAAGSAAQQSGPTVNIPAGFDEEEFLDGAKAVYTRLQKSWDSRDMAD 219
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
IE+ + V + + + V + + +++ E ++T+
Sbjct: 220 IEQFATAGVVNEIKQQAKE----DPGPSQTDVLMVNARLLEVKEEGGVNHVTVYYDVLLR 275
Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
S +V ++W FV+ + + W L + E
Sbjct: 276 E----------DSSQSQPSQVREVWHFVKPVGS-DGMWKLDGIQQLE 311
>gi|23502145|ref|NP_698272.1| hypothetical protein BR1269 [Brucella suis 1330]
gi|163843532|ref|YP_001627936.1| import inner membrane translocase subunit Tim44 [Brucella suis ATCC
23445]
gi|225852763|ref|YP_002732996.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis ATCC 23457]
gi|254702005|ref|ZP_05163833.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
5 str. 513]
gi|254704546|ref|ZP_05166374.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
3 str. 686]
gi|254706558|ref|ZP_05168386.1| import inner membrane translocase subunit Tim44 [Brucella
pinnipedialis M163/99/10]
gi|254710332|ref|ZP_05172143.1| import inner membrane translocase subunit Tim44 [Brucella
pinnipedialis B2/94]
gi|256031826|ref|ZP_05445440.1| import inner membrane translocase subunit Tim44 [Brucella
pinnipedialis M292/94/1]
gi|256044910|ref|ZP_05447814.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis bv. 1 str. Rev.1]
gi|256160005|ref|ZP_05457714.1| import inner membrane translocase subunit Tim44 [Brucella ceti
M490/95/1]
gi|256255226|ref|ZP_05460762.1| import inner membrane translocase subunit Tim44 [Brucella ceti
B1/94]
gi|256263752|ref|ZP_05466284.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis bv. 2 str. 63/9]
gi|256369690|ref|YP_003107200.1| Tim44 domain-containing protein [Brucella microti CCM 4915]
gi|260168960|ref|ZP_05755771.1| Tim44 domain-containing protein [Brucella sp. F5/99]
gi|260565489|ref|ZP_05835973.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis bv. 1 str. 16M]
gi|261222423|ref|ZP_05936704.1| import inner membrane translocase subunit Tim44 [Brucella ceti
B1/94]
gi|261314017|ref|ZP_05953214.1| import inner membrane translocase subunit Tim44 [Brucella
pinnipedialis M163/99/10]
gi|261317896|ref|ZP_05957093.1| import inner membrane translocase subunit Tim44 [Brucella
pinnipedialis B2/94]
gi|261752572|ref|ZP_05996281.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
5 str. 513]
gi|261755230|ref|ZP_05998939.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
3 str. 686]
gi|261758453|ref|ZP_06002162.1| import inner membrane translocase subunit Tim44 [Brucella sp.
F5/99]
gi|265988925|ref|ZP_06101482.1| import inner membrane translocase subunit Tim44 [Brucella
pinnipedialis M292/94/1]
gi|265991338|ref|ZP_06103895.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis bv. 1 str. Rev.1]
gi|265998390|ref|ZP_06110947.1| import inner membrane translocase subunit Tim44 [Brucella ceti
M490/95/1]
gi|294852604|ref|ZP_06793277.1| import inner membrane translocase subunit Tim44 [Brucella sp. NVSL
07-0026]
gi|23348108|gb|AAN30187.1| conserved hypothetical protein [Brucella suis 1330]
gi|163674255|gb|ABY38366.1| import inner membrane translocase subunit Tim44 [Brucella suis ATCC
23445]
gi|225641128|gb|ACO01042.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis ATCC 23457]
gi|255999852|gb|ACU48251.1| Tim44 domain-containing protein [Brucella microti CCM 4915]
gi|260151557|gb|EEW86651.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis bv. 1 str. 16M]
gi|260921007|gb|EEX87660.1| import inner membrane translocase subunit Tim44 [Brucella ceti
B1/94]
gi|261297119|gb|EEY00616.1| import inner membrane translocase subunit Tim44 [Brucella
pinnipedialis B2/94]
gi|261303043|gb|EEY06540.1| import inner membrane translocase subunit Tim44 [Brucella
pinnipedialis M163/99/10]
gi|261738437|gb|EEY26433.1| import inner membrane translocase subunit Tim44 [Brucella sp.
F5/99]
gi|261742325|gb|EEY30251.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
5 str. 513]
gi|261744983|gb|EEY32909.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
3 str. 686]
gi|262552858|gb|EEZ08848.1| import inner membrane translocase subunit Tim44 [Brucella ceti
M490/95/1]
gi|263002122|gb|EEZ14697.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis bv. 1 str. Rev.1]
gi|263093810|gb|EEZ17815.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis bv. 2 str. 63/9]
gi|264661122|gb|EEZ31383.1| import inner membrane translocase subunit Tim44 [Brucella
pinnipedialis M292/94/1]
gi|294821193|gb|EFG38192.1| import inner membrane translocase subunit Tim44 [Brucella sp. NVSL
07-0026]
gi|326409290|gb|ADZ66355.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis M28]
gi|326539001|gb|ADZ87216.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis M5-90]
Length = 342
Score = 98.5 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 64/228 (28%), Gaps = 12/228 (5%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M + + A I FV +R ++ +G + + + +
Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQ-TAAAGAGHAGAQPFGASQPFGSAKSASGQ 181
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
F V+ D D F I + A
Sbjct: 182 GSFSGRTPSVNPFETKQAAAPVVEDEPMDVGQEDLDRF----EQMLVDIQGGYGREDYAA 237
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
+ KL + L S K + V + + A E N Y T+ + I
Sbjct: 238 LRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAI 297
Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
D+ ++ +P + +++WTF R W L + + E
Sbjct: 298 DVMVDRTSGAVVEGNPNEPVESVELWTFTR---TDGGAWQLAAIQGTE 342
>gi|260773108|ref|ZP_05882024.1| hypothetical protein VIB_001575 [Vibrio metschnikovii CIP 69.14]
gi|260612247|gb|EEX37450.1| hypothetical protein VIB_001575 [Vibrio metschnikovii CIP 69.14]
Length = 289
Score = 98.5 bits (243), Expect = 8e-19, Method: Composition-based stats.
Identities = 34/223 (15%), Positives = 75/223 (33%), Gaps = 27/223 (12%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+F I F +F R L K G+ P ++ ++
Sbjct: 93 GIQFMDILIFGLIGFALFKLARHFLAGKQGSLNPRQPAYNTNVHRQSFEQAPEQEFKPAA 152
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+++ P + FD F+N +R Y + ++ ++ I
Sbjct: 153 SSGFGSTMHNDVP------------HNYPPGFDKIAFINGSREHYRILQGAWNHNQLETI 200
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
E+ V ++ D + + V D +I+ A ++ ++++ G+
Sbjct: 201 EEYVSQSLFSDLKAEREKLDQQPQ----TEVMYVDAEIVRADYDDRKAQLSLQFTGRCRD 256
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
D +++DIW R++ N W+++ +
Sbjct: 257 L----------GDETE-EEILDIWHLERDLTQPNAPWLIVGIQ 288
>gi|254714328|ref|ZP_05176139.1| import inner membrane translocase subunit Tim44 [Brucella ceti
M644/93/1]
gi|254717227|ref|ZP_05179038.1| import inner membrane translocase subunit Tim44 [Brucella ceti
M13/05/1]
gi|261219045|ref|ZP_05933326.1| import inner membrane translocase subunit Tim44 [Brucella ceti
M13/05/1]
gi|261322105|ref|ZP_05961302.1| import inner membrane translocase subunit Tim44 [Brucella ceti
M644/93/1]
gi|260924134|gb|EEX90702.1| import inner membrane translocase subunit Tim44 [Brucella ceti
M13/05/1]
gi|261294795|gb|EEX98291.1| import inner membrane translocase subunit Tim44 [Brucella ceti
M644/93/1]
Length = 342
Score = 98.1 bits (242), Expect = 8e-19, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 64/228 (28%), Gaps = 12/228 (5%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M + + A I FV +R ++ +G + + + +
Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQ-TAAAGAGHAGAQPFGASQPFGSAKSASGQ 181
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
F V+ D D F I + A
Sbjct: 182 GSFSGRTPSVNPFETKQAAAPVVEDEPMDVGQEDLDRF----EQMLVDIQGGYGREDYAA 237
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
+ KL + L S K + V + + A E N Y T+ + I
Sbjct: 238 LRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAI 297
Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
D+ ++ +P + +++WTF R W L + + E
Sbjct: 298 DVMVDRTSGAVVEGNPNEPVESVELWTFTR---TDGGAWQLAAIQGTE 342
>gi|254176738|ref|ZP_04883395.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399]
gi|254208682|ref|ZP_04915030.1| Tim44 domain protein [Burkholderia mallei JHU]
gi|254360262|ref|ZP_04976532.1| Tim44 domain protein [Burkholderia mallei 2002721280]
gi|147750558|gb|EDK57627.1| Tim44 domain protein [Burkholderia mallei JHU]
gi|148029502|gb|EDK87407.1| Tim44 domain protein [Burkholderia mallei 2002721280]
gi|160697779|gb|EDP87749.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399]
Length = 339
Score = 98.1 bits (242), Expect = 8e-19, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58
F M + +I L A ++ + G + G + + G +
Sbjct: 121 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRPA 180
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ G +V FD + FL A+ + + ++
Sbjct: 181 APGGAFPGSGSAYAGEAQRVFGGAAAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 240
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
EG + I + + F + + V D +++ ++
Sbjct: 241 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 297
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
R L+ + ++W + + W+L +
Sbjct: 298 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 336
>gi|269961023|ref|ZP_06175392.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834242|gb|EEZ88332.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 303
Score = 98.1 bits (242), Expect = 9e-19, Method: Composition-based stats.
Identities = 37/223 (16%), Positives = 78/223 (34%), Gaps = 22/223 (9%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +RG+LG K G+ + SK ++ + +
Sbjct: 102 GIQFMDILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNFEQQP 161
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
N + FD F+N +R Y + ++ ++H I
Sbjct: 162 NNTNAGGFGGFGAQT-------DIPHNYPPGFDQAAFINGSREHYRILQGAWNHNQLHTI 214
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
E+ V +++D + + + V D +I+ A + N ++++
Sbjct: 215 EEYVSPSLFEDLKAERAKLDGE----QHTDVMYVDAEIVRADYDANKAQLSLQF------ 264
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
++ I + DIW R++ N W+++ +
Sbjct: 265 -----SGRYRDAEEGIEEDIEDIWHLERDLTVPNAPWLIVGIQ 302
>gi|161619220|ref|YP_001593107.1| import inner membrane translocase subunit Tim44 [Brucella canis
ATCC 23365]
gi|260566211|ref|ZP_05836681.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
4 str. 40]
gi|161336031|gb|ABX62336.1| import inner membrane translocase subunit Tim44 [Brucella canis
ATCC 23365]
gi|260155729|gb|EEW90809.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
4 str. 40]
Length = 342
Score = 98.1 bits (242), Expect = 9e-19, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 64/228 (28%), Gaps = 12/228 (5%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M + + A I FV +R ++ +G + + + +
Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQ-TAAAGAGHAGAQPFGASQPFGSAKSASGQ 181
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
F V+ D D F I + A
Sbjct: 182 GSFSGRTPSVNPFETKQAAAPVVEDEPMDVGQEDLDRF----EQMLVDIQGGYGREDYAA 237
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
+ KL + L S K + V + + A E N Y T+ + I
Sbjct: 238 LRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAI 297
Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
D+ ++ +P + +++WTF R W L + + E
Sbjct: 298 DVMVDRTSGAVVEGNPNEPVESVELWTFTR---TDGGAWQLAAIQGTE 342
>gi|306840266|ref|ZP_07473040.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO2]
gi|306289793|gb|EFM60975.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO2]
Length = 342
Score = 98.1 bits (242), Expect = 9e-19, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 65/228 (28%), Gaps = 12/228 (5%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M + + A I FV +R ++ +G + + + +
Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQ-TAAAGAGHAGAQPFGASQPFGSAKSASGQ 181
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
F V+ D D F I ++ A
Sbjct: 182 GSFSGRTPSVNPFETKQAAAPVVEDEPMDVGQEDLDRF----EQMLVDIQGAYGREDYAA 237
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
+ KL + L S K + V + + A E N Y T+ + I
Sbjct: 238 LRKLTTPEAMSYLAEELGEIASGGKRNEVKDVRLLQGDVSEAWREGNVEYATVAMRYSAI 297
Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
D+ ++ +P + +++WTF R W L + + E
Sbjct: 298 DVMVDRTSGAIVEGNPNEPVESVELWTFTR---TDGGAWQLAAIQGTE 342
>gi|254203707|ref|ZP_04910067.1| Tim44 domain protein [Burkholderia mallei FMH]
gi|147745219|gb|EDK52299.1| Tim44 domain protein [Burkholderia mallei FMH]
Length = 343
Score = 98.1 bits (242), Expect = 9e-19, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58
F M + +I L A ++ + G + G + + G +
Sbjct: 125 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRPA 184
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ G +V FD + FL A+ + + ++
Sbjct: 185 APGGAFPGSGSAYAGEAQRVFGGAAAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 244
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
EG + I + + F + + V D +++ ++
Sbjct: 245 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 301
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
R L+ + ++W + + W+L +
Sbjct: 302 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 340
>gi|53724992|ref|YP_102025.1| hypothetical protein BMA0187 [Burkholderia mallei ATCC 23344]
gi|121599413|ref|YP_994055.1| hypothetical protein BMASAVP1_A2759 [Burkholderia mallei SAVP1]
gi|124384532|ref|YP_001028281.1| hypothetical protein BMA10229_A2319 [Burkholderia mallei NCTC
10229]
gi|126450327|ref|YP_001081925.1| hypothetical protein BMA10247_2399 [Burkholderia mallei NCTC 10247]
gi|238561937|ref|ZP_00441249.2| Tim44 domain protein [Burkholderia mallei GB8 horse 4]
gi|251767560|ref|ZP_02267708.2| Tim44 domain protein [Burkholderia mallei PRL-20]
gi|52428415|gb|AAU49008.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344]
gi|121228223|gb|ABM50741.1| conserved hypothetical protein [Burkholderia mallei SAVP1]
gi|124292552|gb|ABN01821.1| conserved hypothetical protein [Burkholderia mallei NCTC 10229]
gi|126243197|gb|ABO06290.1| conserved hypothetical protein [Burkholderia mallei NCTC 10247]
gi|238523657|gb|EEP87094.1| Tim44 domain protein [Burkholderia mallei GB8 horse 4]
gi|243062328|gb|EES44514.1| Tim44 domain protein [Burkholderia mallei PRL-20]
Length = 323
Score = 98.1 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58
F M + +I L A ++ + G + G + + G +
Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRPA 164
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ G +V FD + FL A+ + + ++
Sbjct: 165 APGGAFPGSGSAYAGEAQRVFGGAAAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 224
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
EG + I + + F + + V D +++ ++
Sbjct: 225 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 281
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
R L+ + ++W + + W+L +
Sbjct: 282 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 320
>gi|167585475|ref|ZP_02377863.1| import inner membrane translocase, subunit Tim44 [Burkholderia
ubonensis Bu]
Length = 334
Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 63/228 (27%), Gaps = 21/228 (9%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F M S +I L A I ++ R + ++ NE P +
Sbjct: 124 FASMMSNLIVIALLAAIGIWLI---RKFMNRRRSNE-PAYSVGGSASASGNYSQGPSFQA 179
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
G G N + V FD + FL A+ + + ++ +G
Sbjct: 180 GNGSSYANEAQSVFGGGTAAAAAGAAAAPLQVPAGFDTEAFLRSAKVYFVRLQAAWDQGN 239
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
+ I + + F + S + V D +++ ++R
Sbjct: 240 LADIREFTTPEM---FAEIKIDLDSRGNEANQTDVVQLDAELVAIEDRGIEQSASVRFH- 295
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
L+ + ++W + W+L +
Sbjct: 296 ----------GLIREAANAPAAPFDEVWNLAK---SGGQGWLLAGIQQ 330
>gi|53804400|ref|YP_113719.1| hypothetical protein MCA1256 [Methylococcus capsulatus str. Bath]
gi|53758161|gb|AAU92452.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
Length = 204
Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/224 (17%), Positives = 70/224 (31%), Gaps = 31/224 (13%)
Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
+LLFA I FF L +L + G++ + ++
Sbjct: 11 NVLDLLLFAGIGFF----LYRLLAAR-GSQPQPAAGAGYYPHSENPGGANPVSGRPAFDT 65
Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
D L P + DFD FLN A+ +Y + ++ E + +
Sbjct: 66 DLLSRRGGAQPAQS-----------QPADFDTTGFLNGAKAAYRQLQAAWDERDLGTLRA 114
Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
L +V+ + D L S+ + D +I+ + + +
Sbjct: 115 LTTDKVFAELQDQLRASAER----HSTELLRVDAEILEVRDRGDEREVAVLFDVTLR--- 167
Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ E V ++W FVR+ P W L + E
Sbjct: 168 --------EAPAEEAAVVHEVWHFVRSRSSRQPTWFLDGIQQVE 203
>gi|306844172|ref|ZP_07476765.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO1]
gi|306275447|gb|EFM57184.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO1]
Length = 342
Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 65/228 (28%), Gaps = 12/228 (5%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M + + A I FV +R ++ +G + + + +
Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQ-TAAAGAGHAGAQPFGASQPFGSAKSASGQ 181
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
F V+ D D F I ++ A
Sbjct: 182 GSFSGRTPSVNPFETKQAAAPVVEDEPMDVGQEDLDRF----EQMLVDIQGAYGREDYAA 237
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
+ KL + L S K + V + + A E N Y T+ + I
Sbjct: 238 LRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAI 297
Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
D+ ++ +P + +++WTF R W L + + E
Sbjct: 298 DVMVDRTSGAIVEGNPNEPVESVELWTFTR---TDGGAWQLAAIQGTE 342
>gi|167909581|ref|ZP_02496672.1| Tim44-like domain protein [Burkholderia pseudomallei 112]
Length = 314
Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58
F M + +I L A ++ + G + G + + G + +
Sbjct: 96 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRQA 155
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ G +V FD + FL A+ + + ++
Sbjct: 156 APGGAFPGSGSAYAGEAQRVFGGAAATTAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 215
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
EG + I + + F + + V D +++ ++
Sbjct: 216 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 272
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
R L+ + ++W + + W+L +
Sbjct: 273 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 311
>gi|66519233|ref|XP_395866.2| PREDICTED: mitochondrial import inner membrane translocase subunit
TIM44-like isoform 1 [Apis mellifera]
Length = 456
Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/192 (16%), Positives = 66/192 (34%), Gaps = 3/192 (1%)
Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF 98
K ++ + + + + I T L++ + +I + +F
Sbjct: 255 KNPYVNKVLEWKIKYEESDNPVIRASRLLTEKVTDIVGGLFQKTDLSETLTEICKLDPNF 314
Query: 99 DPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157
D FL I+++ G + ++ Y+ L + + + ++
Sbjct: 315 DRIQFLKYCETDIIPNILEAMVRGNLEILKDWCHEAPYKLIAQPLIQVEKLGYQLDNKIL 374
Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217
I+++ +I + E + I Q I D +I DPE +V IW R+
Sbjct: 375 DINNVDLIMGKVMEQGPVLIISFQCQQIMCVRDAKKNVIEGDPEKVMRVNYIWVLCRDPT 434
Query: 218 PSNP--NWVLIS 227
NP W L+
Sbjct: 435 ELNPKAAWRLLD 446
>gi|53718281|ref|YP_107267.1| hypothetical protein BPSL0638 [Burkholderia pseudomallei K96243]
gi|52208695|emb|CAH34631.1| putative membrane protein [Burkholderia pseudomallei K96243]
Length = 323
Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58
F M + +I L A ++ + G + G + + G +
Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRPA 164
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ G +V FD + FL A+ + + ++
Sbjct: 165 APGGAFPGSGSAYAGEAQRVFGGAAAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 224
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
EG + I + + F + + V D +++ ++
Sbjct: 225 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 281
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
R L+ + ++W + + W+L +
Sbjct: 282 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 320
>gi|269102148|ref|ZP_06154845.1| hypothetical protein VDA_001568 [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268162046|gb|EEZ40542.1| hypothetical protein VDA_001568 [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 272
Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 74/228 (32%), Gaps = 31/228 (13%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F ++ IL+ I F +F L+G+ + K E
Sbjct: 76 FDGINF--MDILIIGVIAFVIFKLLKGMR--------------ANKGTPMGHREAYAGNS 119
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
+ + + T + ++ +F+ FLN +R Y I +++ +
Sbjct: 120 PQQRNQQQAQFRQAANGASTGFSPDSDVPFNLPPNFNLNAFLNGSREHYRTIQEAWNKND 179
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
+ I + V + D + + + V D +++ A + N ++I+
Sbjct: 180 LAKIREYVSPALLNDLMAERAKLNGE----QHTEVMYVDAEVVRADYDANMAQLSIQF-- 233
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
S + + D+W R++ N W+++ +
Sbjct: 234 ---------SGRYKDSHEGVEEDITDVWHLERDLRTPNAPWLIVGIQA 272
>gi|254187708|ref|ZP_04894220.1| Tim44-like domain protein [Burkholderia pseudomallei Pasteur 52237]
gi|157935388|gb|EDO91058.1| Tim44-like domain protein [Burkholderia pseudomallei Pasteur 52237]
Length = 339
Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58
F M + +I L A ++ + G + G + + G + +
Sbjct: 121 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRQA 180
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ G +V FD + FL A+ + + ++
Sbjct: 181 APGGAFPGSGSAYAGEAQRVFGGAAATTAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 240
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
EG + I + + F + + V D +++ ++
Sbjct: 241 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 297
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
R L+ + ++W + + W+L +
Sbjct: 298 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 336
>gi|170068221|ref|XP_001868783.1| mitochondrial import inner membrane translocase subunit tim44
[Culex quinquefasciatus]
gi|167864292|gb|EDS27675.1| mitochondrial import inner membrane translocase subunit tim44
[Culex quinquefasciatus]
Length = 431
Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/182 (15%), Positives = 65/182 (35%), Gaps = 3/182 (1%)
Query: 52 SKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY 111
+ + D + + T L++ + +I + FD K FL + N
Sbjct: 243 QYDESENPMIRASRLLTDKVSDVMGNLFSKTELSETLTEICKIDPSFDQKQFLRDCENDI 302
Query: 112 -EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE 170
I+++ G + ++ Y ++ + + S ++ I+++ + +
Sbjct: 303 IPNILEAMIRGDLEILKDWCFESTYNIIATPIAQAQKAGFFLDSKILDIENVDLAMGKVM 362
Query: 171 ENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIST 228
E + + Q I D N ++ DPE + +W R+ NP W L+
Sbjct: 363 EQGPVLIVTFQTQQIMCVRDSKNAVVEGDPEKVMRCNYVWVLCRDPNDLNPRSAWRLMEL 422
Query: 229 KL 230
+
Sbjct: 423 QA 424
>gi|167917595|ref|ZP_02504686.1| Tim44-like domain protein [Burkholderia pseudomallei BCC215]
Length = 267
Score = 97.3 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58
F M + +I L A ++ + G + G + + G + +
Sbjct: 49 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRQA 108
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ G +V FD + FL A+ + + ++
Sbjct: 109 APGGAFPGSGSAYAGEAQRVFGGAAATTAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 168
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
EG + I + + F + + V D +++ ++
Sbjct: 169 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 225
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
R L+ + ++W + + W+L +
Sbjct: 226 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 264
>gi|195108009|ref|XP_001998585.1| GI24055 [Drosophila mojavensis]
gi|193915179|gb|EDW14046.1| GI24055 [Drosophila mojavensis]
Length = 452
Score = 97.3 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/176 (17%), Positives = 70/176 (39%), Gaps = 3/176 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEA 113
+ + D + + T L++ M ++V + +FD K FL++ ++
Sbjct: 267 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPNFDQKQFLHDCEKDIIPN 326
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
++++ G + ++ Y ++ K + S ++ I+++++ + E
Sbjct: 327 VLEAIVRGDLEILKDWCFESTYNIIATPITQAKKAGLYLDSKILDIENIELAMGKVMEQG 386
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ I Q I D+ ++ DPE +V +W R+ NP W L+
Sbjct: 387 PVLIITFQAQQIMCVRDQKGQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 442
>gi|326678158|ref|XP_003201001.1| PREDICTED: mitochondrial import inner membrane translocase subunit
TIM44-like [Danio rerio]
gi|94734038|emb|CAK04039.1| novel protein containing a Tim44-like domain (zgc:110764) [Danio
rerio]
Length = 452
Score = 97.3 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/179 (16%), Positives = 68/179 (37%), Gaps = 3/179 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEA 113
+ D + I T +++V+ +I+ V FD FL + ++
Sbjct: 267 ESDNAFIRASRAVTDKMTDIIGGLFSKTEMSEVLTEILKVDPSFDKDSFLKQCEKDIIPN 326
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I+++ +G++ ++ Y + K+ S ++ ID++ + + E
Sbjct: 327 ILEAMIQGELDVLKDWCYEATYSQLAHPIQQAKAMGLQFHSKILDIDNIDLAMGKMMEQG 386
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN--WVLISTKL 230
+ I Q + + ++ DP+ +++ +W R+ NPN W L+
Sbjct: 387 PVLIITFQAQLVMVIRNVKGEVVEGDPDKVLRMMYVWALCRDQEELNPNAAWRLLDISA 445
>gi|237810871|ref|YP_002895322.1| Tim44 domain protein [Burkholderia pseudomallei MSHR346]
gi|237504479|gb|ACQ96797.1| Tim44 domain protein [Burkholderia pseudomallei MSHR346]
Length = 323
Score = 97.3 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58
F M + +I L A ++ + G + G + + G + +
Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRQA 164
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ G +V FD + FL A+ + + ++
Sbjct: 165 APGGAFPGSGSAYAGEAQRVFGGAAAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 224
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
EG + I + + F + + V D +++ ++
Sbjct: 225 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 281
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
R L+ + ++W + + W+L +
Sbjct: 282 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 320
>gi|76811089|ref|YP_332258.1| transmembrane protein [Burkholderia pseudomallei 1710b]
gi|254261326|ref|ZP_04952380.1| Tim44-like domain protein [Burkholderia pseudomallei 1710a]
gi|76580542|gb|ABA50017.1| transmembrane protein [Burkholderia pseudomallei 1710b]
gi|254220015|gb|EET09399.1| Tim44-like domain protein [Burkholderia pseudomallei 1710a]
Length = 323
Score = 97.3 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58
F M + +I L A ++ + G + G + + G + +
Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRQA 164
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ G +V FD + FL A+ + + ++
Sbjct: 165 APGGAFPGSGSAYAGEAQRVFGGAAATTAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 224
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
EG + I + + F + + V D +++ ++
Sbjct: 225 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 281
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
R L+ + ++W + + W+L +
Sbjct: 282 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 320
>gi|221211249|ref|ZP_03584228.1| Tim44 domain protein [Burkholderia multivorans CGD1]
gi|221168610|gb|EEE01078.1| Tim44 domain protein [Burkholderia multivorans CGD1]
Length = 340
Score = 97.3 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/233 (12%), Positives = 63/233 (27%), Gaps = 25/233 (10%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F M S +I L A I ++ R + ++ E +S +
Sbjct: 124 FAGMMSNLIVIALLAMIGIWLV---RKFMNRRRPQEPAYSVGSAPSSSGGYAQSPSFQPG 180
Query: 63 GKGKKKDNLDSINELFP-----IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117
+ + + V V FD FL A+ S+ + +
Sbjct: 181 STSQYSGSGSNYANEAQRVFNGGAPAAGAAAAAPVQVPAGFDTDAFLRSAKVSFVRLQAA 240
Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
+ +G + I + + F + S + V D +++ +
Sbjct: 241 WDQGNLADIREFTTPEM---FAEIKIDLDSRGNEPNQTDVVQLDAELVALEDRGIEQSAS 297
Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+R L+ S ++W + W+L +
Sbjct: 298 VRFH-----------GLIRESSNAAAEPFDEVWNLSK---SGGQGWLLAGIQQ 336
>gi|61806584|ref|NP_001013525.1| mitochondrial import inner membrane translocase subunit TIM44
[Danio rerio]
gi|60649493|gb|AAH90431.1| Translocase of inner mitochondrial membrane 44 homolog (yeast)
[Danio rerio]
gi|182891522|gb|AAI64677.1| Timm44 protein [Danio rerio]
Length = 452
Score = 96.9 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/179 (16%), Positives = 68/179 (37%), Gaps = 3/179 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEA 113
+ D + I T +++V+ +I+ V FD FL + ++
Sbjct: 267 ESDNAFIRASRAVTDKMTDIIGGLFSKTEMSEVLTEILKVDPTFDKDSFLKQCEKDIIPN 326
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I+++ +G++ ++ Y + K+ S ++ ID++ + + E
Sbjct: 327 ILEAMIQGELDVLKDWCYEATYSQLAHPIQQAKAMGLQFHSKILDIDNIDLAMGKMMEQG 386
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN--WVLISTKL 230
+ I Q + + ++ DPE +++ +W R+ NPN W L+
Sbjct: 387 PVLIITFQAQLVMVIRNVKGEVVEGDPEKVLRMMYVWALCRDQEELNPNAAWRLLDISA 445
>gi|332029994|gb|EGI69819.1| Mitochondrial import inner membrane translocase subunit TIM44
[Acromyrmex echinatior]
Length = 452
Score = 96.9 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/200 (16%), Positives = 66/200 (33%), Gaps = 6/200 (3%)
Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF 98
K + + + D + I T L++ + +I + F
Sbjct: 251 KNPYVNKVMDWKTKFDESDNAVLRASRLLTDKVSDIIGGLFQKTELSETLTEICKLDPTF 310
Query: 99 DPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157
FL + + I+++ G + ++ Y + K S ++
Sbjct: 311 CKIQFLKDCETDFIPNILEAMIRGDLEILKDWCHEGPYNIISQPHREVKKLGHYSDSKIL 370
Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217
ID++ ++ + E + I Q I + N +I DP+ +V +W R+
Sbjct: 371 DIDNVDLVMGKMMEQGPVLIISFQSQQIMCVKNSKNEVIEGDPQKVMRVNYVWVLCRDRT 430
Query: 218 PSNP--NWV---LISTKLGE 232
NP W L +T +
Sbjct: 431 ELNPKAAWRLLDLSATSSEQ 450
>gi|323524735|ref|YP_004226888.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
CCGE1001]
gi|323381737|gb|ADX53828.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
CCGE1001]
Length = 330
Score = 96.5 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/229 (11%), Positives = 63/229 (27%), Gaps = 23/229 (10%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F + +I + A I ++ R +G+K +P S +
Sbjct: 122 FAGAMANVIVIAVLAMIGIWLV---RRFMGRKRDASQPAYAGHSP-----SLNSGAAGYT 173
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
+ + + SV FD FL A+ + + ++ G
Sbjct: 174 QEPRYTAPPTGSYLEPQGNPLTTPSVNATPSVPAGFDSDAFLRNAKVYFVRLQAAWDVGN 233
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
+ I + + F + S + V + ++ N + ++R
Sbjct: 234 IDDIREFTTPEM---FAEVRVDLASRGAEKNQTDVVQLNADLLGVEERANEYFASVRF-- 288
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
L+ + +++W + W+L +
Sbjct: 289 ---------SGLIREAPGAAAEPFVEVWNLSK-ANRPGEGWLLAGIQQV 327
>gi|115471689|ref|NP_001059443.1| Os07g0409700 [Oryza sativa Japonica Group]
gi|50508458|dbj|BAD30582.1| mitochondrial inner membrane translocating protein-like protein
[Oryza sativa Japonica Group]
gi|113610979|dbj|BAF21357.1| Os07g0409700 [Oryza sativa Japonica Group]
gi|215686787|dbj|BAG89637.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215701468|dbj|BAG92892.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218199472|gb|EEC81899.1| hypothetical protein OsI_25725 [Oryza sativa Indica Group]
gi|222636882|gb|EEE67014.1| hypothetical protein OsJ_23936 [Oryza sativa Japonica Group]
Length = 475
Score = 96.5 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 31/224 (13%), Positives = 61/224 (27%), Gaps = 20/224 (8%)
Query: 28 RGVLGKK-TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFP------- 79
+ VLG+K + G + K V I + ++
Sbjct: 246 KSVLGEKWEAFKNKMRGHPAYKRVNEYTKPVVNIGQEVAEDVRERWETSDNPVVQKIQDL 305
Query: 80 -----IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134
T R+I F DF + + + ++ ++ +G V ++K V
Sbjct: 306 NESIFEETATAVSFREIRQRDPSFSLPDFAGDVQEMIKPVLTAYSKGDVKTLKKYCTKEV 365
Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNL 194
+ S ++ I D + + +T I + Q I D++
Sbjct: 366 IERCKGERDAYASQGIFFDHKILHISDADVRETKMMGSTPIIIVGFQTQQIYCVRDREGQ 425
Query: 195 LISSDPEIFGKVIDIWTFV-------RNIPPSNPNWVLISTKLG 231
+ + V W P W L +
Sbjct: 426 VTEGGQDTIQTVFYAWAMQLMDSDEVPEEESYYPVWRLREIQQV 469
>gi|153009251|ref|YP_001370466.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
anthropi ATCC 49188]
gi|151561139|gb|ABS14637.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
anthropi ATCC 49188]
Length = 348
Score = 96.5 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 8/228 (3%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M + + A I FV +R ++ + + +K +
Sbjct: 128 MFGLLLQVAVIALIAMFV---MRMFANRRQPAAAGAGNAGAQPFGAAKTAAPQAGSQAGF 184
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
+ + E + + D +D L+ + ++ A
Sbjct: 185 GGRTPSVNPFETKQAAAPVTPAAPAVEDEPMDVGQED-LDRFEQMLAEVQTAYGREDYAA 243
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
+ KL + L S+ + V + + A E + Y T+ I I
Sbjct: 244 LRKLATPEAMSYLAEELGEIASSGMRNEVKDVKLLQGDVSEAWREGDVEYATVAIRYSAI 303
Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
D++ ++ +P+ + +++WTF R W+L + + E
Sbjct: 304 DVMLDRNTGAVVEGNPDEPVESVELWTFTR---TDGGEWLLAAIQGTE 348
>gi|304311556|ref|YP_003811154.1| hypothetical protein HDN1F_19260 [gamma proteobacterium HdN1]
gi|301797289|emb|CBL45509.1| Hypothetical protein HDN1F_19260 [gamma proteobacterium HdN1]
Length = 324
Score = 96.2 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 29/235 (12%), Positives = 70/235 (29%), Gaps = 25/235 (10%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKT----------GNEKPFSGFFSGKYVFSKRDE 56
IL+FA + F +F LR ++ + P +
Sbjct: 105 GLQFLDILIFALLGFVIFKLLRRRQQQRATPAMAGAGGGRFDVPEPANAPQERRTFDLGN 164
Query: 57 RGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116
++ FD FL AR Y I +
Sbjct: 165 PDEKVGAAAASAPAFSPSAAAATDTLGWGNETSVPFNLPAGFDMNSFLTGAREHYRTIQE 224
Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
++ +G + + + + ++ + +T K + + V D +++ A +
Sbjct: 225 AWNKGNLETLREYLAPELFDALSAERATLKGE----QHTEVMFVDAELVRADQNATLAEV 280
Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
++R G++ + + D+W R++ + W+++ +
Sbjct: 281 SLRFSGRYRDQT--------EGVEDAI---TDVWHLERDLSKPDQPWLIVGIEEV 324
>gi|78484559|ref|YP_390484.1| import inner membrane translocase, subunit Tim44 [Thiomicrospira
crunogena XCL-2]
gi|78362845|gb|ABB40810.1| Hypothetical protein; predicted membrane protein [Thiomicrospira
crunogena XCL-2]
Length = 306
Score = 96.2 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 28/226 (12%), Positives = 67/226 (29%), Gaps = 19/226 (8%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
ILL A + F +F L K+ + + R T +
Sbjct: 99 GIQLLDILLIALVAFLLF----SFLKKRQATMMQPAYSRESSPSSFEAASRQTTTQMREN 154
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
D IG+ L++ + FD F+ A+ + I ++ +
Sbjct: 155 HAPTYDPYASGSLIGSGLSEQAESMTQKPDWFDEAGFMEAAKGHFVEIQKAWDALDSQEL 214
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ + T ++ + V + + + +I+ + +++R
Sbjct: 215 ADYCTPELMAALQSEMDTFQA---GENLTEVEELNAETVEMAIDGDYFIVSVRF------ 265
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ + ++ +IW R + NW + + +
Sbjct: 266 -----NGFIREDRNDVAHAFNEIWHI-RRLAAGEGNWQIAGIQQNQ 305
>gi|332374284|gb|AEE62283.1| unknown [Dendroctonus ponderosae]
Length = 422
Score = 96.2 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 67/177 (37%), Gaps = 3/177 (1%)
Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-E 112
+ + + + + T L++ + +I + FD K FL +
Sbjct: 236 EESENPVIRASKVLTEKVAYVMGGLFQKTELSETLTEICKIDNSFDTKRFLKQCETDIIP 295
Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
I+++ G + ++ Y F+ + ++S ++ ID++ ++ + +
Sbjct: 296 NILEAMTRGDLEVLKDWCHEGPYNLFSIPIQEAYKKGFKIESKILDIDNVDLVMGKVMDQ 355
Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ I Q + D + ++ D + +V +W R+I ++P W L+
Sbjct: 356 GPVLIISFTSQQMMVFKDVEGNVVDGDLDKIMRVTHVWVLCRDITETDPRAAWRLLD 412
>gi|307728446|ref|YP_003905670.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
CCGE1003]
gi|307582981|gb|ADN56379.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
CCGE1003]
Length = 330
Score = 96.2 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/229 (11%), Positives = 63/229 (27%), Gaps = 23/229 (10%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F + +I L A I ++ R +G+K +P +
Sbjct: 122 FAGAMANIIVIALLAMIGIWLI---RRFMGRKRDASQPAYA-----GQSPSLNSGATGYT 173
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
+ + + SV FD + FL A+ + + ++ G
Sbjct: 174 QEPRYTAPPAGSYLEPQGNPLTTPSVGATPSVPAGFDSEAFLRNAKVYFVRLQAAWDVGN 233
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
+ I + + F + S + V + ++ N + ++R
Sbjct: 234 IEDIREFTTPEM---FAEVRVDLASRGSESNQTDVVQLNADLLGVEERANEYFASVRF-- 288
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
L+ + +++W + W+L +
Sbjct: 289 ---------SGLIREALGAPAEPFVEVWNLSKANRAGEG-WLLAGIQQV 327
>gi|254181778|ref|ZP_04888375.1| Tim44-like domain protein [Burkholderia pseudomallei 1655]
gi|184212316|gb|EDU09359.1| Tim44-like domain protein [Burkholderia pseudomallei 1655]
Length = 323
Score = 96.2 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58
F M + +I L A ++ + G + G + + G +
Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPALNRGHDGYSQDAGVQRPA 164
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ G +V FD + FL A+ + + ++
Sbjct: 165 APGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 224
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
EG + I + + F + + V D +++ ++
Sbjct: 225 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 281
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
R L+ + ++W + + W+L +
Sbjct: 282 RFH-----------GLIREAQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 320
>gi|217420068|ref|ZP_03451574.1| Tim44 domain protein [Burkholderia pseudomallei 576]
gi|217397372|gb|EEC37388.1| Tim44 domain protein [Burkholderia pseudomallei 576]
Length = 339
Score = 96.2 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58
F M + +I L A ++ + G + G + + G + +
Sbjct: 121 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRQA 180
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ G +V FD + FL A+ + + ++
Sbjct: 181 APGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 240
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
EG + I + + F + + V D +++ ++
Sbjct: 241 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGTNQTDVVQLDAELLAVEDRGGEHLASV 297
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
R L+ + ++W + + W+L +
Sbjct: 298 RFH-----------GLIREAQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 336
>gi|206559267|ref|YP_002230028.1| hypothetical protein BCAL0874 [Burkholderia cenocepacia J2315]
gi|198035305|emb|CAR51180.1| putative membrane protein [Burkholderia cenocepacia J2315]
Length = 343
Score = 95.8 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/236 (12%), Positives = 69/236 (29%), Gaps = 28/236 (11%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPF--------SGFFSGKYVFSKR 54
F M + +I L A + ++ R + ++ E + SG +S F +
Sbjct: 124 FASMMANVIVIALLAMVGIWLI---RKFMNRRRPQEPAYSVGGAASSSGGYSQSPSFQQG 180
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
+ + + + V FD + FL A+ + +
Sbjct: 181 NAGSNYAGSGSSYANEAQGVFGGGAAAAGAAAAAAAPLQVPAGFDTEAFLRSAKVYFVRL 240
Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
++ +G + I + + F + S + + V D +++
Sbjct: 241 QAAWDQGNLADIREFTTPEM---FAEIKIDLDSRGNDANQTDVVQLDAELVAIEDRGIEQ 297
Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++R L+ S ++W + + W+L +
Sbjct: 298 SASVRFH-----------GLIRESANTSAAPFDEVWNLSK---SGSQGWLLAGIQQ 339
>gi|307181325|gb|EFN68959.1| Mitochondrial import inner membrane translocase subunit TIM44
[Camponotus floridanus]
Length = 452
Score = 95.8 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 32/201 (15%), Positives = 65/201 (32%), Gaps = 6/201 (2%)
Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
E + + I D + I T L++ + +I + +
Sbjct: 250 ENNPYVNKVMDWKMKYDESDNAIFRASKLLTDKVSDIMGGLFQKTELSETLTEICKLDPN 309
Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
F FL + + I+++ G + ++ Y K S +
Sbjct: 310 FSKIQFLKDCETDFIPNILEAMIRGDLEILKDWCHEGPYNLIAQPHKEVKKLGHYSDSKI 369
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
+ ID++ ++ + E + I Q I + N +I DP+ +V +W R+
Sbjct: 370 LDIDNVDLMMGKMMEQGPVLIISFQSQQIMCVRNSKNEVIEGDPQKVMRVNYVWVMCRDR 429
Query: 217 PPSN--PNWV---LISTKLGE 232
N W L +T +
Sbjct: 430 TELNSKAAWRLLDLSATSSEQ 450
>gi|119115002|ref|XP_310830.3| AGAP000291-PA [Anopheles gambiae str. PEST]
gi|116130625|gb|EAA06726.3| AGAP000291-PA [Anopheles gambiae str. PEST]
Length = 401
Score = 95.8 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 28/176 (15%), Positives = 63/176 (35%), Gaps = 3/176 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ + D + I T L++ + +I + FD K FL + N
Sbjct: 216 ESENPMIRASRLLTDKVSDIMGNLFSKTELSETLTEICKIDPSFDQKQFLRDCENDIIPN 275
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
++++ G++ + Y ++ + + S ++ I+++ + + E
Sbjct: 276 VLEAIVRGELEVLRDWCFESTYNIIATPIAQAQKAGCRLDSKILDIENVDLAMGKVMEQG 335
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ + Q I D +I DPE + +W R+ +P W L+
Sbjct: 336 PVLIVTFQTQQIMCVRDGKGAVIEGDPEKVMRCHHVWVLCRDPNELDPKAAWRLME 391
>gi|226196729|ref|ZP_03792309.1| Tim44 domain protein [Burkholderia pseudomallei Pakistan 9]
gi|225931260|gb|EEH27267.1| Tim44 domain protein [Burkholderia pseudomallei Pakistan 9]
Length = 323
Score = 95.8 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58
F M + +I L A ++ + G + G + + G + +
Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRQA 164
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ G +V FD + FL A+ + + ++
Sbjct: 165 APGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 224
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
EG + I + + F + + V D +++ ++
Sbjct: 225 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGTNQTDVVQLDAELLAVEDRGGEHLASV 281
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
R L+ + ++W + + W+L +
Sbjct: 282 RFH-----------GLIREAQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 320
>gi|254247237|ref|ZP_04940558.1| Mitochondrial import inner membrane translocase, subunit Tim44-like
protein [Burkholderia cenocepacia PC184]
gi|124872013|gb|EAY63729.1| Mitochondrial import inner membrane translocase, subunit Tim44-like
protein [Burkholderia cenocepacia PC184]
Length = 343
Score = 95.8 bits (236), Expect = 5e-18, Method: Composition-based stats.
Identities = 29/236 (12%), Positives = 69/236 (29%), Gaps = 28/236 (11%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPF--------SGFFSGKYVFSKR 54
F M + +I L A + ++ R + ++ E + SG +S F +
Sbjct: 124 FASMMANVIVIALLAMVGIWLI---RKFMNRRRPQEPAYSVGGAASSSGGYSQSPSFQQG 180
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
+ + + + V FD + FL A+ + +
Sbjct: 181 NTGSNYAGSGSSYANEAQGVFGGGAAAAGAAAAAAAPLQVPAGFDTEAFLRSAKVYFVRL 240
Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
++ +G + I + + F + S + + V D +++
Sbjct: 241 QAAWDQGNLADIREFTTPEM---FAEIKIDLDSRGNDANQTDVVQLDAELVAIEDRGIEQ 297
Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++R L+ S ++W + + W+L +
Sbjct: 298 SASVRFH-----------GLIRESANTSAAPFDEVWNLSK---SGSQGWLLAGIQQ 339
>gi|107023666|ref|YP_621993.1| import inner membrane translocase, subunit Tim44 [Burkholderia
cenocepacia AU 1054]
gi|116690751|ref|YP_836374.1| import inner membrane translocase, subunit Tim44 [Burkholderia
cenocepacia HI2424]
gi|105893855|gb|ABF77020.1| import inner membrane translocase, subunit Tim44 [Burkholderia
cenocepacia AU 1054]
gi|116648840|gb|ABK09481.1| import inner membrane translocase, subunit Tim44 [Burkholderia
cenocepacia HI2424]
Length = 343
Score = 95.4 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 28/236 (11%), Positives = 69/236 (29%), Gaps = 28/236 (11%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPF--------SGFFSGKYVFSKR 54
F M + +I L A + ++ R + ++ E + SG +S F +
Sbjct: 124 FASMMANVIVIALLAMVGIWLI---RKFMNRRRPQEPAYSVGGAASSSGGYSQSPSFQQG 180
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
+ + + + V FD + FL A+ + +
Sbjct: 181 NTGSNYAGSGSSYANEAQGVFGGGAAAAGAAAAAAAPLQVPAGFDTEAFLRSAKVYFVRL 240
Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
++ +G + I + + F + S + + V D +++
Sbjct: 241 QAAWDQGNLADIREFTTPEM---FAEIKIDLDSRGNDANQTDVVQLDAELVAIEDRGIEQ 297
Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++R L+ + ++W + + W+L +
Sbjct: 298 SASVRFH-----------GLIREAANTSAAPFDEVWNLSK---SGSQGWLLAGIQQ 339
>gi|161523748|ref|YP_001578760.1| import inner membrane translocase subunit Tim44 [Burkholderia
multivorans ATCC 17616]
gi|189351491|ref|YP_001947119.1| hypothetical protein BMULJ_02693 [Burkholderia multivorans ATCC
17616]
gi|221200067|ref|ZP_03573110.1| Tim44 domain protein [Burkholderia multivorans CGD2M]
gi|221206780|ref|ZP_03579792.1| Tim44 domain protein [Burkholderia multivorans CGD2]
gi|160341177|gb|ABX14263.1| import inner membrane translocase subunit Tim44 [Burkholderia
multivorans ATCC 17616]
gi|189335513|dbj|BAG44583.1| putative membrane protein [Burkholderia multivorans ATCC 17616]
gi|221173435|gb|EEE05870.1| Tim44 domain protein [Burkholderia multivorans CGD2]
gi|221180306|gb|EEE12710.1| Tim44 domain protein [Burkholderia multivorans CGD2M]
Length = 340
Score = 95.4 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 30/233 (12%), Positives = 63/233 (27%), Gaps = 25/233 (10%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F M S +I L A I ++ R + ++ E +S +
Sbjct: 124 FAGMMSNLIVIALLAMIGIWLV---RKFMNRRRPQEPAYSVGSAPSSSGGYAQSPSFQPG 180
Query: 63 GKGKKKDNLDSINELFP-----IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117
+ + + V V FD FL A+ S+ + +
Sbjct: 181 STSQYSGSGSNYANEAQRVFNGGAPAAGAAAAAPVQVPAGFDTDAFLRSAKVSFVRLQAA 240
Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
+ +G + I + + F + S + V D +++ +
Sbjct: 241 WDQGNLADIREFTTPEM---FAEIKIDLDSRGNEPNQTDVVQLDAELVALEDRGIEQSAS 297
Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+R L+ S ++W + W+L +
Sbjct: 298 VRFH-----------GLIRESANAAAEPFDEVWNLSK---SGGQGWLLAGIQQ 336
>gi|167568817|ref|ZP_02361691.1| Tim44-like domain family protein [Burkholderia oklahomensis C6786]
Length = 325
Score = 95.4 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 26/238 (10%), Positives = 65/238 (27%), Gaps = 29/238 (12%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F M + +I L A ++ R + ++ ++P + +
Sbjct: 105 FASMMANVIVIALLAMAGIWLV---RKFMNRRGAQQQPAYAGGQPSQSRGGYGQDAGVPR 161
Query: 63 GKGKKKDNLDSINELFPIGTRLNKV---------MRDIVSVYTDFDPKDFLNEARNSYEA 113
S + R+ +V FD + FL A+ +
Sbjct: 162 QAASNDAFPGSGSAYAGEAQRMFGGAAAATTAAAAAAAPAVPAGFDTEAFLRNAKVYFVR 221
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
+ ++ EG + I + + F + + V D +++
Sbjct: 222 LQAAWDEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGE 278
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ ++R L+ + ++W + + W+L +
Sbjct: 279 HFASVRFH-----------GLIREAQGASAEPFEEVWNLSK---SGSQGWLLAGIQQV 322
>gi|13475963|ref|NP_107533.1| hypothetical protein mll7160 [Mesorhizobium loti MAFF303099]
gi|14026723|dbj|BAB53319.1| mll7160 [Mesorhizobium loti MAFF303099]
Length = 328
Score = 95.4 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 31/224 (13%), Positives = 66/224 (29%), Gaps = 14/224 (6%)
Query: 10 DFLILLFAF-ITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
F LL A I + L +R +T + + + +G +
Sbjct: 117 MFGFLLQALLIGGAIMLAIRFF---RTQSAQGPAPALAGAGNAQASRFENRAAAQQQTAS 173
Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
G L +I D F + I ++F A+ +
Sbjct: 174 SFTIPGFGDGSGGASLAADSEEIRLA--QTDLDAF----QQLLTDIQEAFGREDHAALRR 227
Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
+ ++ L+ + S + + I + E + Y T + +
Sbjct: 228 ATTPEMVSYLSEELADNAQKGLRNEVSDITLLQADIAESWRENDRDYATAALRYESRDVM 287
Query: 189 YDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
++ ++ D + + ++WTF R NW L + +
Sbjct: 288 RERGSGKVVEGDEDHPTETTELWTFTRQNGS---NWKLSAIQQA 328
>gi|254719318|ref|ZP_05181129.1| import inner membrane translocase subunit Tim44 [Brucella sp.
83/13]
gi|265984320|ref|ZP_06097055.1| import inner membrane translocase subunit Tim44 [Brucella sp.
83/13]
gi|306839093|ref|ZP_07471910.1| import inner membrane translocase subunit Tim44 [Brucella sp. NF
2653]
gi|264662912|gb|EEZ33173.1| import inner membrane translocase subunit Tim44 [Brucella sp.
83/13]
gi|306405640|gb|EFM61902.1| import inner membrane translocase subunit Tim44 [Brucella sp. NF
2653]
Length = 342
Score = 95.4 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 65/228 (28%), Gaps = 12/228 (5%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M + + A I FV +R ++ +G + + + +
Sbjct: 126 MFGLILQVAVIALIAMFV---MRMFANRRQ-TAAAGAGHAGAQPFGASQPFGSAKSASGQ 181
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
F V+ D D F I ++ A
Sbjct: 182 GSFSGRTPSVNPFETKQAAAPVVEDEPMDVGQEDLDRF----EQMLVDIQGAYGREDYAA 237
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
+ KL + L S K + V + + A E N Y T+ + I
Sbjct: 238 LRKLTTPEAMSCLAEELGEIASGGKRNEVKDVKLLQGDVSEAWREGNVEYATVAMRYSAI 297
Query: 186 SASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
D+ ++ +P + +++WTF R W L + + E
Sbjct: 298 DVMVDRTSGAIVEGNPNEPVESVELWTFTR---IDGGAWQLAAIQGTE 342
>gi|134279597|ref|ZP_01766309.1| Tim44 domain protein [Burkholderia pseudomallei 305]
gi|134248797|gb|EBA48879.1| Tim44 domain protein [Burkholderia pseudomallei 305]
Length = 323
Score = 95.0 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58
F M + +I L A ++ + G + G + + G +
Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPALNRGHDGYSQDAGIQRPA 164
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ G +V FD + FL A+ + + ++
Sbjct: 165 APGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 224
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
EG + I + + F + + V D +++ ++
Sbjct: 225 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 281
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
R L+ + ++W + + W+L +
Sbjct: 282 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 320
>gi|254197071|ref|ZP_04903495.1| Tim44-like domain protein [Burkholderia pseudomallei S13]
gi|169653814|gb|EDS86507.1| Tim44-like domain protein [Burkholderia pseudomallei S13]
Length = 339
Score = 95.0 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58
F M + +I L A ++ + G + G + + G + +
Sbjct: 121 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRQA 180
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ G +V FD + FL A+ + + ++
Sbjct: 181 APGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 240
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
EG + I + + F + + V D +++ ++
Sbjct: 241 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 297
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
R L+ + ++W + + W+L +
Sbjct: 298 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 336
>gi|170734093|ref|YP_001766040.1| import inner membrane translocase subunit Tim44 [Burkholderia
cenocepacia MC0-3]
gi|169817335|gb|ACA91918.1| import inner membrane translocase subunit Tim44 [Burkholderia
cenocepacia MC0-3]
Length = 343
Score = 95.0 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 28/236 (11%), Positives = 69/236 (29%), Gaps = 28/236 (11%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPF--------SGFFSGKYVFSKR 54
F M + +I L A + ++ R + ++ E + SG +S F +
Sbjct: 124 FASMMANVIVIALLAMVGIWLI---RKFMNRRRPQEPAYSVGGAASSSGGYSQSPSFQQG 180
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
+ + + + V FD + FL A+ + +
Sbjct: 181 NTGSNYAGSGSSYANEAQGVFGGGAAAAGAAAAAAAPLQVPAGFDIEAFLRSAKVYFVRL 240
Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
++ +G + I + + F + S + + V D +++
Sbjct: 241 QAAWDQGNLADIREFTTPEM---FAEIKIDLDSRGNDANQTDVVQLDAELVAIEDRGIEQ 297
Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++R L+ + ++W + + W+L +
Sbjct: 298 SASVRFH-----------GLIREAANTSAAPFDEVWNLSK---SGSQGWLLAGIQQ 339
>gi|73540138|ref|YP_294658.1| import inner membrane translocase, subunit Tim44 [Ralstonia
eutropha JMP134]
gi|72117551|gb|AAZ59814.1| Mitochondrial import inner membrane translocase, subunit Tim44
[Ralstonia eutropha JMP134]
Length = 327
Score = 95.0 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 25/219 (11%), Positives = 62/219 (28%), Gaps = 16/219 (7%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSK-RDERGIITLGKGKKKDNL 71
++L A + F +R G N++P + + +
Sbjct: 122 LILIALVAFVAIWLIRKFRGGSQRNQQPAYAGAGNAGGMGDLGNSAEPMLREQTPSPAAS 181
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
+ + + V DFD + FL A+ + + ++ G + I +
Sbjct: 182 NPVMPAAGAAAVAADAAQQPWGVPADFDTEAFLRNAKVHFVRLQAAWDAGNLDDIREFTT 241
Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
+ F + V + V + +++ N ++R
Sbjct: 242 PEM---FAEIKMDLAERGAEVNKTDVVTLEAQLLGIESAPNQHLASVRF----------- 287
Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++ E ++W + + W+L +
Sbjct: 288 SGMIRERTGEAAQPFAEVWNLAKPV-SGTGGWLLAGIQQ 325
>gi|167901351|ref|ZP_02488556.1| Tim44-like domain protein [Burkholderia pseudomallei NCTC 13177]
Length = 251
Score = 95.0 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58
F M + +I L A ++ + G + G + + G +
Sbjct: 33 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPALNRGHDGYSQDAGIQRPA 92
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ G +V FD + FL A+ + + ++
Sbjct: 93 APGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 152
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
EG + I + + F + + V D +++ ++
Sbjct: 153 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 209
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
R L+ + ++W + + W+L +
Sbjct: 210 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 248
>gi|167844353|ref|ZP_02469861.1| Tim44-like domain protein [Burkholderia pseudomallei B7210]
Length = 258
Score = 95.0 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58
F M + +I L A ++ + G + G + + G + +
Sbjct: 40 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRQA 99
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ G +V FD + FL A+ + + ++
Sbjct: 100 APGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 159
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
EG + I + + F + + V D +++ ++
Sbjct: 160 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 216
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
R L+ + ++W + + W+L +
Sbjct: 217 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 255
>gi|126454670|ref|YP_001064966.1| Tim44-like domain-containing protein [Burkholderia pseudomallei
1106a]
gi|242315731|ref|ZP_04814747.1| Tim44 domain protein [Burkholderia pseudomallei 1106b]
gi|126228312|gb|ABN91852.1| Tim44 domain protein [Burkholderia pseudomallei 1106a]
gi|242138970|gb|EES25372.1| Tim44 domain protein [Burkholderia pseudomallei 1106b]
Length = 323
Score = 94.6 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58
F M + +I L A ++ + G + G + + G + +
Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRQA 164
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ G +V FD + FL A+ + + ++
Sbjct: 165 APGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 224
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
EG + I + + F + + V D +++ ++
Sbjct: 225 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGEHLASV 281
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
R L+ + ++W + + W+L +
Sbjct: 282 RFH-----------GLIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 320
>gi|50085732|ref|YP_047242.1| hypothetical protein ACIAD2665 [Acinetobacter sp. ADP1]
gi|49531708|emb|CAG69420.1| conserved hypothetical protein; putative membrane protein
[Acinetobacter sp. ADP1]
Length = 340
Score = 94.6 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 30/221 (13%), Positives = 58/221 (26%), Gaps = 18/221 (8%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
I+L A I FF+F + G K GN G FS
Sbjct: 136 IWIVLIAAIAFFIFRRF-GAKKKLAGNNPYAPNNAGGSTPFSTSTTPRSNAGADNTNIFG 194
Query: 71 LDSINELFPIGTRLNKVMRDI-VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
P + + +P FL AR + I + I +
Sbjct: 195 QSVGGGAAPTAAPFGTAYSNSGNQLPDGTEPAAFLRIARQRFNHIQSVNSASNIEEIRRY 254
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+ +Y + ++ + + + + S E +++R
Sbjct: 255 LTPDLYASMYSDIM----ANQDQDVAEFSNLNAMVADTSTENGQYIVSVRF--------- 301
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ ++W FV+ + W + +
Sbjct: 302 --TGTVSEDLNSQPQPFSEVWHFVKPAGSTE-EWKVAGIQQ 339
>gi|242012401|ref|XP_002426921.1| import inner membrane translocase subunit TIM44, putative
[Pediculus humanus corporis]
gi|212511150|gb|EEB14183.1| import inner membrane translocase subunit TIM44, putative
[Pediculus humanus corporis]
Length = 474
Score = 94.6 bits (233), Expect = 9e-18, Method: Composition-based stats.
Identities = 32/178 (17%), Positives = 65/178 (36%), Gaps = 3/178 (1%)
Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-E 112
+ + D + I T L++ + +IV V F FL++
Sbjct: 288 EESENPMIRLSRLFTDKVTYIMGGIFQNTELSETLTEIVKVDPGFTKAKFLHQCETDIIP 347
Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
I+++ G + + Y + + K+ + S ++ I+ + + I +
Sbjct: 348 NILEAMVRGDLDILRDWCHDGPYNLLSQPIKQIKAMGGKLDSKILDIEGLDLTVGKIMDQ 407
Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIST 228
+ I Q I DK+N +I DP+ +V +W R+ +P W L+
Sbjct: 408 GPVLIITFTCQQIQCVRDKNNKVIDGDPQKVMRVNYVWALSRDKSVLDPKAAWRLLDI 465
>gi|134296928|ref|YP_001120663.1| import inner membrane translocase subunit Tim44 [Burkholderia
vietnamiensis G4]
gi|134140085|gb|ABO55828.1| import inner membrane translocase, subunit Tim44 [Burkholderia
vietnamiensis G4]
Length = 341
Score = 94.6 bits (233), Expect = 9e-18, Method: Composition-based stats.
Identities = 28/236 (11%), Positives = 64/236 (27%), Gaps = 28/236 (11%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F M + +I L A + ++ R + ++ +E +S S
Sbjct: 122 FASMMANVIVIALLAMVGIWLI---RKFMNRRRPHEPAYSAGGSASSAGGYAQGSSFQQG 178
Query: 63 GKGK--------KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
G + + + V FD + FL A+ + +
Sbjct: 179 SGGNYAGSGSSYANEAQSVFGGGAAAAGAAGALGAAPLQVPAGFDTEAFLRSAKVYFVRL 238
Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
++ +G + I + + F + S + V D +++
Sbjct: 239 QAAWDQGNMADIREFTTPEM---FAEIKIDLDSRGNEANQTDVVQLDAELVAIEDRGIEQ 295
Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++R L+ S ++W + W+L +
Sbjct: 296 AASVRFH-----------GLIRESANASAAPFEEVWNLSK---SGGQGWLLAGIQQ 337
>gi|301058972|ref|ZP_07199941.1| Tim44-like domain protein [delta proteobacterium NaphS2]
gi|300446968|gb|EFK10764.1| Tim44-like domain protein [delta proteobacterium NaphS2]
Length = 250
Score = 94.6 bits (233), Expect = 9e-18, Method: Composition-based stats.
Identities = 24/223 (10%), Positives = 78/223 (34%), Gaps = 13/223 (5%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG--KKK 68
F IL+ + +F++ + +G K FS
Sbjct: 38 FEILIIGGLIYFLYKKF-------SGKNKSKRSLFSSPDGGGGSGGGYESISSSQYRPPD 90
Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
I ++ P+ + ++ + + FDP++F A++ + + ++ + +++
Sbjct: 91 MASSGIPDMAPVNSSVDD-LDTVRHYDPGFDPENFKEFAQDVFFKVQAAWTRRDISVMKQ 149
Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
+ +++ ++ + ++ + + + + + I++ ++ ++ + +
Sbjct: 150 HLGTQLLGEYEQHFADLRAKGQENRLENIAVRSVDIVDMGEMGGEPFVIVQFRANLLDYT 209
Query: 189 YD-KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
D ++ K + W F R+ S W L +
Sbjct: 210 VDEATGQVLEGSSSEPVKFEERWAFSRSPGSSQ--WKLEGIQE 250
>gi|317050977|ref|YP_004112093.1| import inner membrane translocase subunit Tim44 [Desulfurispirillum
indicum S5]
gi|316946061|gb|ADU65537.1| import inner membrane translocase subunit Tim44 [Desulfurispirillum
indicum S5]
Length = 249
Score = 94.6 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 50/221 (22%), Positives = 84/221 (38%), Gaps = 13/221 (5%)
Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
F IL I FF+ R + G+ + N P + G +D + +
Sbjct: 32 FSIFDILFIGAIIFFIV---RALRGRTSRNNNPKDDWTLGGKD---QDSYSPTASNEPRT 85
Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
D I L+P T +K +R I +F DFL AR + + + ++ IE
Sbjct: 86 TPGADKITSLYPEQT-THKGLRPIEMSDPNFTEGDFLAAAREVFSTVQQAKANEELEQIE 144
Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
L+D + + ++T + K V+ I + +A + T IT++
Sbjct: 145 FLMDKAMLNQLQEDIATWRKEGKRVQLDSATIHSALVADAIQQMGTDCITVKFEATLDRT 204
Query: 188 SYDKDNLLISSDPEIFGK-VIDIWTFVRNIPPSNPNWVLIS 227
D + +PE + V + W F+RNI W LI
Sbjct: 205 FLPVD---VEGEPEPVHETVTEYWRFMRNIGE--AAWQLIG 240
>gi|194900032|ref|XP_001979561.1| GG16152 [Drosophila erecta]
gi|190651264|gb|EDV48519.1| GG16152 [Drosophila erecta]
Length = 459
Score = 94.6 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 3/176 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ + D + + T L++ M ++V + FD KDFL +
Sbjct: 274 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPCFDQKDFLRDCETDIIPN 333
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I++S G + ++ + + + K + S ++ I+++++ + E
Sbjct: 334 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGLYLDSKILDIENIELAMGKVMEQG 393
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ I Q I D+ + ++ DPE +V +W R+ NP W L+
Sbjct: 394 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 449
>gi|195569739|ref|XP_002102866.1| GD20131 [Drosophila simulans]
gi|194198793|gb|EDX12369.1| GD20131 [Drosophila simulans]
Length = 304
Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 3/176 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ + D + + T L++ M ++V + FD KDFL +
Sbjct: 119 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 178
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I++S G + ++ + + + K + S ++ I+++++ + E
Sbjct: 179 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGLYLDSKILDIENIELAMGKVMEQG 238
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ I Q I D+ + ++ DPE +V +W R+ NP W L+
Sbjct: 239 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 294
>gi|167561581|ref|ZP_02354497.1| Tim44-like domain family protein [Burkholderia oklahomensis EO147]
Length = 324
Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/238 (10%), Positives = 64/238 (26%), Gaps = 30/238 (12%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F M + +I L A ++ + + G ++P + +
Sbjct: 105 FASMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPSQSRGGYGQDAGVPR 160
Query: 63 GKGKKKDNLDSINELFPIGTRLNKV---------MRDIVSVYTDFDPKDFLNEARNSYEA 113
S + R+ +V FD + FL A+ +
Sbjct: 161 QAASNDAFPGSGSAYAGEAQRMFGGAAAATTAAAAAAAPAVPAGFDAEAFLRNAKVYFVR 220
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
+ ++ EG + I + + F + + V D +++
Sbjct: 221 LQAAWDEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGE 277
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ ++R L+ + ++W + + W+L +
Sbjct: 278 HFASVRFH-----------GLIREAQGASAEPFEEVWNLSK---SGSQGWLLAGIQQV 321
>gi|258593729|emb|CBE70070.1| Import inner membrane translocase, subunit Tim44 precursor
(fragment) [NC10 bacterium 'Dutch sediment']
Length = 244
Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/223 (11%), Positives = 75/223 (33%), Gaps = 16/223 (7%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
+++ I ++ V+ +++ +P ++ + ER
Sbjct: 36 MDLVILGGIGLAIYW----VVKQRS---RPALIEAPYQHQRTWSAEREPERYQGAAAGQA 88
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
L++ M I + F+ + + + ++ + I ++
Sbjct: 89 TMV------QEGDLDQGMAHIRQMDPGFETGRLREICTDLFFKVQAAWGNRDLEPIRTIL 142
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
++ + ++ K + + + +++ A E+ Y+T+R + + + D
Sbjct: 143 TPEMHTQLGADVMRLRNERKINRLENIAVRSVELTEAWQEQGQDYVTVRFLANLLDYTVD 202
Query: 191 K-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ + ++ K + WT R + NP W L + +
Sbjct: 203 EGTSQVVDGSRTDPVKFEEYWTVTRPVG-PNP-WRLAAINQAD 243
>gi|195353703|ref|XP_002043343.1| GM10044 [Drosophila sechellia]
gi|194127457|gb|EDW49500.1| GM10044 [Drosophila sechellia]
Length = 458
Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 3/176 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ + D + + T L++ M ++V + FD KDFL +
Sbjct: 273 ESENPVIRASRLLTDKMSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 332
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I++S G + ++ + + + K + S ++ I+++++ + E
Sbjct: 333 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGLYLDSKILDIENIELAMGKVMEQG 392
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ I Q I D+ + ++ DPE +V +W R+ NP W L+
Sbjct: 393 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 448
>gi|332852444|ref|XP_003316109.1| PREDICTED: mitochondrial import inner membrane translocase subunit
TIM44 isoform 1 [Pan troglodytes]
Length = 452
Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 3/196 (1%)
Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
E + + D + + T +++V+ +I+ V
Sbjct: 250 ENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPA 309
Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
FD FL + N ++++ G++ ++ Y + K+ S +
Sbjct: 310 FDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRI 369
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
+ ID++ + + E + I Q + + ++ DP+ +++ +W R+
Sbjct: 370 LDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQ 429
Query: 217 PPSNP--NWVLISTKL 230
NP W L+
Sbjct: 430 DELNPYVAWRLLDISA 445
>gi|167822777|ref|ZP_02454248.1| Tim44-like domain protein [Burkholderia pseudomallei 9]
Length = 225
Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT----GNEKPFSGFFSGKYVFSKRDERG 58
F M + +I L A ++ + G + G + + G + +
Sbjct: 7 FAGMMANVIVIALLAMAGIWLVRKFMNRRGAQQPAYAGGQPTLNRGHDGYSQDAGVQRQA 66
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ G +V FD + FL A+ + + ++
Sbjct: 67 APGGAFPGSGSAYAGEAQRVFGGAGAATAAAAAPAVPAGFDTEAFLRNAKVYFVRLQAAW 126
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
EG + I + + F + + V D +++ ++
Sbjct: 127 DEGNLADIREFTTPEM---FAEVKIDLDGRGAGTNQTDVVQLDAELLAVEDRGGEHLASV 183
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
R L+ + ++W + + W+L +
Sbjct: 184 RFH-----------GLIREAQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 222
>gi|237807609|ref|YP_002892049.1| import inner membrane translocase subunit Tim44 [Tolumonas auensis
DSM 9187]
gi|237499870|gb|ACQ92463.1| import inner membrane translocase subunit Tim44 [Tolumonas auensis
DSM 9187]
Length = 286
Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/223 (14%), Positives = 74/223 (33%), Gaps = 31/223 (13%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
F ILL A + F F LR +P G ++ + G
Sbjct: 93 GLQIFDILLMAGVAFLAFRFLRNRKPATAAGPQPAYGMPYQTKQSTESAFQKPEYAGNTS 152
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
D++ P G F+ +F+ A Y + ++ + I
Sbjct: 153 FSPATDTVPFDLPEG----------------FNTAEFIKGACEHYRTLQVAWNDNDFSKI 196
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
++ V ++ + + + + V D +++ A + N+ I++ G++
Sbjct: 197 QEYVTPELFNELKQERANYTGA----QHTEVLYVDAELVRAERKINSAQISVLFKGRYRD 252
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
+ + E ++W RN+ +N W+++ +
Sbjct: 253 S--------VEGIEEDI---HEVWHLERNLSSANAPWLIVGIE 284
>gi|33636719|ref|NP_006342.2| mitochondrial import inner membrane translocase subunit TIM44
precursor [Homo sapiens]
gi|25014073|sp|O43615|TIM44_HUMAN RecName: Full=Mitochondrial import inner membrane translocase
subunit TIM44; Flags: Precursor
gi|21708003|gb|AAH33628.1| Translocase of inner mitochondrial membrane 44 homolog (yeast)
[Homo sapiens]
gi|119589360|gb|EAW68954.1| translocase of inner mitochondrial membrane 44 homolog (yeast),
isoform CRA_a [Homo sapiens]
gi|119589361|gb|EAW68955.1| translocase of inner mitochondrial membrane 44 homolog (yeast),
isoform CRA_a [Homo sapiens]
gi|123980796|gb|ABM82227.1| translocase of inner mitochondrial membrane 44 homolog (yeast)
[synthetic construct]
gi|123995621|gb|ABM85412.1| translocase of inner mitochondrial membrane 44 homolog (yeast)
[synthetic construct]
gi|158260291|dbj|BAF82323.1| unnamed protein product [Homo sapiens]
gi|307685105|dbj|BAJ20483.1| translocase of inner mitochondrial membrane 44 homolog [synthetic
construct]
Length = 452
Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 3/196 (1%)
Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
E + + D + + T +++V+ +I+ V
Sbjct: 250 ENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPA 309
Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
FD FL + N ++++ G++ ++ Y + K+ S +
Sbjct: 310 FDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRI 369
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
+ ID++ + + E + I Q + + ++ DP+ +++ +W R+
Sbjct: 370 LDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQ 429
Query: 217 PPSNP--NWVLISTKL 230
NP W L+
Sbjct: 430 DELNPYAAWRLLDISA 445
>gi|126440320|ref|YP_001057720.1| Tim44-like domain-containing protein [Burkholderia pseudomallei
668]
gi|126219813|gb|ABN83319.1| Tim44-like domain protein [Burkholderia pseudomallei 668]
Length = 324
Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/238 (10%), Positives = 62/238 (26%), Gaps = 30/238 (12%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGK---------YVFSK 53
F M + +I L A ++ + + G ++P
Sbjct: 105 FAGMMANVIVIALLAMAGIWLVRKFMN----RRGAQQPAYAGGQPTLNRGHDGYSQDAGI 160
Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
+ + G +F +V FD + FL A+ +
Sbjct: 161 QRQAAPGGAFPGSGSAYAGEAQRVFGGAAAATAAAATAPAVPAGFDTEAFLRNAKVYFVR 220
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
+ ++ EG + I + + F + + V D +++
Sbjct: 221 LQAAWDEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTDVVQLDAELLAVEDRGGE 277
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
++R L+ + ++W + + W+L +
Sbjct: 278 HLASVRFH-----------GLIREAQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQA 321
>gi|2809420|gb|AAB97740.1| translocase of inner mitochondrial membrane Tim44 precursor [Homo
sapiens]
Length = 452
Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 3/196 (1%)
Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
E + + D + + T +++V+ +I+ V
Sbjct: 250 ENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPA 309
Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
FD FL + N ++++ G++ ++ Y + K+ S +
Sbjct: 310 FDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRI 369
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
+ ID++ + + E + I Q + + ++ DP+ +++ +W R+
Sbjct: 370 LDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQ 429
Query: 217 PPSNP--NWVLISTKL 230
NP W L+
Sbjct: 430 DELNPYAAWRLLDISA 445
>gi|24648138|ref|NP_650786.2| CG11779, isoform A [Drosophila melanogaster]
gi|78706780|ref|NP_001027193.1| CG11779, isoform D [Drosophila melanogaster]
gi|7300484|gb|AAF55639.1| CG11779, isoform A [Drosophila melanogaster]
gi|71854566|gb|AAZ52532.1| CG11779, isoform D [Drosophila melanogaster]
Length = 459
Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 3/176 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ + D + + T L++ M ++V + FD KDFL +
Sbjct: 274 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 333
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I++S G + ++ + + + K + S ++ I+++++ + E
Sbjct: 334 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGVYLDSKILDIENIELAMGKVMEQG 393
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ I Q I D+ + ++ DPE +V +W R+ NP W L+
Sbjct: 394 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 449
>gi|195497862|ref|XP_002096280.1| GE25149 [Drosophila yakuba]
gi|194182381|gb|EDW95992.1| GE25149 [Drosophila yakuba]
Length = 459
Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 3/176 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ + D + + T L++ M ++V + FD KDFL +
Sbjct: 274 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 333
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I++S G + ++ + + + K + S ++ I+++++ + E
Sbjct: 334 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGLYLDSKILDIENIELAMGKVMEQG 393
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ I Q I D+ + ++ DPE +V +W R+ NP W L+
Sbjct: 394 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 449
>gi|198450930|ref|XP_001358182.2| GA11194 [Drosophila pseudoobscura pseudoobscura]
gi|198131257|gb|EAL27319.2| GA11194 [Drosophila pseudoobscura pseudoobscura]
Length = 458
Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/180 (16%), Positives = 65/180 (36%), Gaps = 3/180 (1%)
Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-E 112
+ + + + + T L++ M ++V + FD K FL +
Sbjct: 272 EESENPMIRASRLLTEKVSDVMGGLFSKTELSETMTELVKIDPAFDQKQFLRDCETDIIP 331
Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
++++ G + ++ Y ++ K + + S ++ I+D+ + + +
Sbjct: 332 NVLEAIVRGDLEILKDWCFESTYNVIATPITQAKKSGLYLDSKILDIEDIDLAMGKVMDQ 391
Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
+ I Q I D ++ DPE +V +W R+ NP W L+
Sbjct: 392 GPVLIITFQAQQIMCVRDPKGKVVEGDPEKVMRVAYVWVLCRDREELNPKAAWRLLEISA 451
>gi|25009742|gb|AAN71045.1| AT09326p [Drosophila melanogaster]
gi|40882559|gb|AAR96191.1| AT24717p [Drosophila melanogaster]
Length = 459
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 3/176 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ + D + + T L++ M ++V + FD KDFL +
Sbjct: 274 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 333
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I++S G + ++ + + + K + S ++ I+++++ + E
Sbjct: 334 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGLYLDSKILDIENIELAMGKVMEQG 393
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ I Q I D+ + ++ DPE +V +W R+ NP W L+
Sbjct: 394 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 449
>gi|260310504|gb|ACX36515.1| RE11601p [Drosophila melanogaster]
Length = 428
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 67/176 (38%), Gaps = 3/176 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ + D + + T L++ M ++V + FD KDFL +
Sbjct: 243 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 302
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I++S G + ++ + + + K + S ++ I+++++ E
Sbjct: 303 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGVYLDSKILDIENIELAMGKFMEQG 362
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ I Q I D+ + ++ DPE +V +W R+ NP W L+
Sbjct: 363 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 418
>gi|195143739|ref|XP_002012855.1| GL23705 [Drosophila persimilis]
gi|194101798|gb|EDW23841.1| GL23705 [Drosophila persimilis]
Length = 458
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/180 (16%), Positives = 65/180 (36%), Gaps = 3/180 (1%)
Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-E 112
+ + + + + T L++ M ++V + FD K FL +
Sbjct: 272 EESENPMIRASRLLTEKVSDVMGGLFSKTELSETMTELVKIDPAFDQKQFLRDCETDIIP 331
Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
++++ G + ++ Y ++ K + + S ++ I+D+ + + +
Sbjct: 332 NVLEAIVRGDLEILKDWCFESTYNIIATPITQAKKSGLYLDSKILDIEDIDLAMGKVMDQ 391
Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
+ I Q I D ++ DPE +V +W R+ NP W L+
Sbjct: 392 GPVLIITFQAQQIMCVRDPKGKVVEGDPEKVMRVAYVWVLCRDREELNPKAAWRLLEISA 451
>gi|24648140|ref|NP_732403.1| CG11779, isoform B [Drosophila melanogaster]
gi|7300485|gb|AAF55640.1| CG11779, isoform B [Drosophila melanogaster]
Length = 428
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 3/176 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ + D + + T L++ M ++V + FD KDFL +
Sbjct: 243 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 302
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I++S G + ++ + + + K + S ++ I+++++ + E
Sbjct: 303 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGVYLDSKILDIENIELAMGKVMEQG 362
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ I Q I D+ + ++ DPE +V +W R+ NP W L+
Sbjct: 363 PVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 418
>gi|222149642|ref|YP_002550599.1| hypothetical protein Avi_3590 [Agrobacterium vitis S4]
gi|221736624|gb|ACM37587.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 270
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/225 (13%), Positives = 65/225 (28%), Gaps = 15/225 (6%)
Query: 11 FLILLFA---FITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
F ILL + F + R + P S + + + G G G
Sbjct: 57 FQILLIGGLIMLAMRFFNRNR----TASSYAGPVSRNDMSQPGSAPQGSSGGSPSGFGGF 112
Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
D + F + + + ++ E A+
Sbjct: 113 SIPKMGSGAALGATRPAVVKAGTDDVGIGPKDLEIF----ESLLKDMQKAYAEEDYSALR 168
Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
++ + L + + V + + A E Y T+ + + I
Sbjct: 169 RITTPEAMSYLAEELGEHATKGVKNEVRDVHLLQGDLAEAWREGTVDYATVAMRYEAIDV 228
Query: 188 SYDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
D+ ++ DP+ + +++WTFVR W + + +
Sbjct: 229 MRDRATGAVVDGDPDHPQQSVEVWTFVRRPGSG---WSISAIQSA 270
>gi|62897685|dbj|BAD96782.1| translocase of inner mitochondrial membrane 44 homolog [Homo
sapiens]
Length = 452
Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 3/196 (1%)
Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
E + + D + + T +++V+ +I+ V
Sbjct: 250 ENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPA 309
Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
FD FL + N ++++ G++ ++ Y + K+ S +
Sbjct: 310 FDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRI 369
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
+ ID++ + + E + I Q + + ++ DP+ +++ +W R+
Sbjct: 370 LDIDNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQ 429
Query: 217 PPSNP--NWVLISTKL 230
NP W L+
Sbjct: 430 DELNPYAAWRLLDISA 445
>gi|307199490|gb|EFN80103.1| Mitochondrial import inner membrane translocase subunit TIM44
[Harpegnathos saltator]
Length = 410
Score = 93.5 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 64/171 (37%), Gaps = 6/171 (3%)
Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAI 126
D + I T L++ + +I + +F FL + + I+++ G + +
Sbjct: 238 TDKVTDIIGGLFQKTELSETLTEICKLDPNFSRIQFLKDCETDFIPNILEAMVRGDLEIL 297
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ Y L + + S ++ ID++ ++ + + + I Q I
Sbjct: 298 KDWCHEAPYNVIAQPLKEVQKLGYRLDSKILDIDNVDLMMGKMMDQGPVLIIGFQCQQIM 357
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWV---LISTKLGE 232
+ N ++ DP+ +V IW R+ NP W L +T +
Sbjct: 358 CVRNSKNEVVEGDPQKVMRVNYIWVLCRDRTELNPKAAWRLLDLSATSSEQ 408
>gi|195037110|ref|XP_001990008.1| GH18477 [Drosophila grimshawi]
gi|193894204|gb|EDV93070.1| GH18477 [Drosophila grimshawi]
Length = 452
Score = 93.5 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 72/176 (40%), Gaps = 3/176 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEA 113
+ + D + + T L++ M ++V + +FD K+FL++ ++
Sbjct: 267 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPNFDQKEFLHDCEKDIIPN 326
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
++++ G + ++ Y ++ K + + S ++ I+++++ + E
Sbjct: 327 VLEAIVRGDLEILKDWCFESTYNIIATPITQAKKSGLYLDSKILDIENIELAMGKVMEQG 386
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ I Q I D+ ++ DP+ +V +W R+ NP W L+
Sbjct: 387 PVLIITFQAQQIMCVRDQKAQVVEGDPDKVMRVHYVWVLCRDRNELNPKAAWRLME 442
>gi|19483882|gb|AAH23454.1| Timm44 protein [Mus musculus]
Length = 450
Score = 93.5 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 65/179 (36%), Gaps = 3/179 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ ++ D + + T +++V+ +I+ V FD FL++
Sbjct: 265 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQCETDIIPN 324
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I+++ G++ ++ Y + K+ S ++ I ++ + + E
Sbjct: 325 ILEAMISGELDILKDWCYEATYSQLAHPIQQAKALGFQFHSRILDISNVDLAMGKMMEQG 384
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
+ + Q + + + DP+ +++ +W R+ NP W L+
Sbjct: 385 PVLIVTFQAQVVMVIKNSKGEVYDGDPDKVQRMLYVWALCRDQEELNPYAAWRLLDISA 443
>gi|237747318|ref|ZP_04577798.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
gi|229378669|gb|EEO28760.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
Length = 305
Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/227 (11%), Positives = 69/227 (30%), Gaps = 26/227 (11%)
Query: 5 KMDSGDFLILLFAFITFFVF-LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
+G +L I +V LR ++ + P + + + +
Sbjct: 102 GDMAGMISTILMLVIIVYVVRFLLRRFSKRRQMEQDPTAYASNYRNTGYQHSS------- 154
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
+ + F + D + DFD FL A++ + + ++ +G +
Sbjct: 155 ---TPEIGSGLPHQFQGNQSGAGAVSDTWGIPADFDVPAFLRAAKSYFIRMQAAWDKGDI 211
Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
+ I + + F + + + + V D +++ + +++
Sbjct: 212 NDIHEFTTPEM---FAEIRLQLQERGDSPNVTDVVSLDAELLGIETLNDEYMASVKF--- 265
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ ++ ++W R I + WVL +
Sbjct: 266 --------SGKIREAESAPAEPFEEVWNLTRPISKKDG-WVLAGIQQ 303
>gi|63093891|dbj|BAD98172.1| hypothetical protein [Drosophila parabipectinata]
Length = 460
Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/176 (17%), Positives = 68/176 (38%), Gaps = 3/176 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ + D + + T L++ M ++V + FD K+FL++
Sbjct: 275 ESENPMIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKEFLHDCETDIIPN 334
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I+++ G + ++ Y ++ K + S ++ I+++++ + E
Sbjct: 335 ILEAIVRGDLEILKDWCFESTYNIIATPITQAKKAGLYLDSKILDIENIELAMGKVMEQG 394
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ I Q I D+ ++ DPE +V +W R+ NP W L+
Sbjct: 395 PVLIITFQAQQIMCVRDQKAQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 450
>gi|170763467|ref|NP_035722.2| mitochondrial import inner membrane translocase subunit TIM44
precursor [Mus musculus]
gi|84570125|gb|AAI10678.1| Timm44 protein [Mus musculus]
gi|109730975|gb|AAI17524.1| Translocase of inner mitochondrial membrane 44 [Mus musculus]
gi|109731467|gb|AAI17525.1| Translocase of inner mitochondrial membrane 44 [Mus musculus]
gi|148690045|gb|EDL21992.1| translocase of inner mitochondrial membrane 44, isoform CRA_a [Mus
musculus]
Length = 452
Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 65/179 (36%), Gaps = 3/179 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ ++ D + + T +++V+ +I+ V FD FL++
Sbjct: 267 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQCETDIIPN 326
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I+++ G++ ++ Y + K+ S ++ I ++ + + E
Sbjct: 327 ILEAMISGELDILKDWCYEATYSQLAHPIQQAKALGFQFHSRILDISNVDLAMGKMMEQG 386
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
+ + Q + + + DP+ +++ +W R+ NP W L+
Sbjct: 387 PVLIVTFQAQVVMVIKNSKGEVYDGDPDKVQRMLYVWALCRDQEELNPYAAWRLLDISA 445
>gi|6016369|sp|O35857|TIM44_MOUSE RecName: Full=Mitochondrial import inner membrane translocase
subunit TIM44; Flags: Precursor
gi|2351410|gb|AAB97624.1| translocase of inner mitochondrial membrane [Mus musculus]
Length = 452
Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 65/179 (36%), Gaps = 3/179 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ ++ D + + T +++V+ +I+ V FD FL++
Sbjct: 267 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQCETDIIPN 326
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I+++ G++ ++ Y + K+ S ++ I ++ + + E
Sbjct: 327 ILEAMISGELDILKDWCYEATYSQLAHPIQQAKALGFQFHSRILDISNVDLAMGKMMEQG 386
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
+ + Q + + + DP+ +++ +W R+ NP W L+
Sbjct: 387 PVLIVTFQAQVVMVIKNSKGEVYDGDPDKVQRMLYVWALCRDQEELNPYAAWRLLDISA 445
>gi|296232753|ref|XP_002761726.1| PREDICTED: mitochondrial import inner membrane translocase subunit
TIM44 [Callithrix jacchus]
Length = 452
Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/196 (13%), Positives = 67/196 (34%), Gaps = 3/196 (1%)
Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
E + + + D + + T +++ + +I+ V
Sbjct: 250 ENNVVFNRFFEMKVKYDESDNALIRASRALTDKVTDLLGGLFSKTEMSEALTEILRVDPA 309
Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
FD FL + N ++++ G++ ++ Y + K+ S +
Sbjct: 310 FDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRI 369
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
+ ID++ + + E + I Q + + ++ DP+ +++ +W R+
Sbjct: 370 LDIDNVDLAMGKMMEQGPVLIITFQAQLVMLVRNPKGEVVEGDPDKVLRMLYVWALCRDQ 429
Query: 217 PPSNP--NWVLISTKL 230
NP W L+
Sbjct: 430 DELNPYAAWRLLDISA 445
>gi|73987180|ref|XP_542123.2| PREDICTED: similar to Import inner membrane translocase subunit
TIM44, mitochondrial precursor [Canis familiaris]
Length = 454
Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 67/179 (37%), Gaps = 3/179 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ + D + + T +++V+ +I+ V FD + FL + N
Sbjct: 269 ESDNALIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPAFDKERFLQQCENDIIPN 328
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
++++ G++ ++ Y + K+ S ++ ID++ + + E
Sbjct: 329 VLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMMEQG 388
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
+ I Q + + ++ DP+ +++ +W R+ NP W L+
Sbjct: 389 PVLIITFQAQLVMVIKNPKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRLLDISA 447
>gi|195452294|ref|XP_002073291.1| GK13236 [Drosophila willistoni]
gi|194169376|gb|EDW84277.1| GK13236 [Drosophila willistoni]
Length = 457
Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/176 (17%), Positives = 69/176 (39%), Gaps = 3/176 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ + + + + T L++ M ++V + +FD K+FL++
Sbjct: 272 ESENPVIRASRLLTEKVSDVMGGIFSKTELSETMTELVKIDPNFDQKEFLHDCETDIIPN 331
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I+++ G + ++ Y + + K + S ++ I+++++ + E
Sbjct: 332 ILEAIVRGDLDILKDWCFESTYSIISTPILNAKKTGLYLDSKILDIENIELAMGKVMEQG 391
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ I Q I D+ ++ DPE +V +W R+ NP W L+
Sbjct: 392 PVLIITFQAQQIMCVRDQKAQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 447
>gi|126323825|ref|XP_001376780.1| PREDICTED: similar to Translocase of inner mitochondrial membrane
44 homolog (yeast) [Monodelphis domestica]
Length = 443
Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 59/152 (38%), Gaps = 3/152 (1%)
Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
T +++V+ +I+ V FD FL + ++++ G++ ++ Y
Sbjct: 285 TEMSEVLTEILKVDPTFDKDRFLQQCERDIIPNVLEAMITGELDILKDWCYEATYSQLAH 344
Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
+ KS S ++ I ++ + + E + I Q + + ++ DP
Sbjct: 345 PIHQAKSMGLQFHSRILDISNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGDVVEGDP 404
Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
+ +++ +W R+ NP W L+
Sbjct: 405 DKVLRMLYVWALCRDQTELNPYAAWRLLDISA 436
>gi|4103602|gb|AAD01797.1| putative mitochondrial inner membrane protein import receptor [Homo
sapiens]
Length = 415
Score = 92.7 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 3/196 (1%)
Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
E + + D + + T +++V+ +I+ V
Sbjct: 213 ENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPP 272
Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
FD FL + N ++++ G++ ++ Y + K+ S +
Sbjct: 273 FDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRI 332
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
+ ID++ + + E + I Q + + ++ DP+ +++ +W R+
Sbjct: 333 LDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQ 392
Query: 217 PPSNP--NWVLISTKL 230
NP W L+
Sbjct: 393 DELNPYAAWRLLDISA 408
>gi|300798484|ref|NP_001179583.1| mitochondrial import inner membrane translocase subunit TIM44 [Bos
taurus]
gi|297476712|ref|XP_002688909.1| PREDICTED: translocase of inner mitochondrial membrane 44 homolog
(yeast) [Bos taurus]
gi|296485872|gb|DAA27987.1| translocase of inner mitochondrial membrane 44 homolog [Bos taurus]
Length = 454
Score = 92.7 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 60/152 (39%), Gaps = 3/152 (1%)
Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
T +++V+ +I+ V FD FL + N ++++ G++ ++ Y
Sbjct: 296 TEMSEVLTEILRVDPAFDKDRFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 355
Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
+ K+ S ++ ID + + + E + I Q + + ++ DP
Sbjct: 356 PIQQAKALGLQFHSRILDIDHIDLAMGKMMEQGPVLIITFQAQMVMVIKNPKGEVVEGDP 415
Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
+ +++ +W R+ NP W L+
Sbjct: 416 DKVLRMLYVWALCRDQDELNPYAAWRLLDISA 447
>gi|118103065|ref|XP_418174.2| PREDICTED: similar to Translocase of inner mitochondrial membrane
44 homolog (yeast) [Gallus gallus]
Length = 451
Score = 92.7 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 3/179 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ D + + T +++V+ +I+ V FD FL +
Sbjct: 266 ESDNAFIRASRAVTDKVTDLIGGLFSKTEMSEVLTEILKVDPSFDKDRFLKQCERDIIPN 325
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
++++ G++ ++ Y + K+ S ++ ID++ + + E
Sbjct: 326 VLEAMISGELDILKDWCYEATYSQLAHPIQQAKAMGLQFHSRILDIDNIDLAMGKMMEQG 385
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
+ I Q + ++ ++ DP+ +++ +W R+ NP W L+
Sbjct: 386 PVLIITFQAQIVMVIKNQKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRLLDISS 444
>gi|332852446|ref|XP_512338.3| PREDICTED: mitochondrial import inner membrane translocase subunit
TIM44 isoform 2 [Pan troglodytes]
Length = 415
Score = 92.7 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 3/196 (1%)
Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
E + + D + + T +++V+ +I+ V
Sbjct: 213 ENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPA 272
Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
FD FL + N ++++ G++ ++ Y + K+ S +
Sbjct: 273 FDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRI 332
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
+ ID++ + + E + I Q + + ++ DP+ +++ +W R+
Sbjct: 333 LDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQ 392
Query: 217 PPSNP--NWVLISTKL 230
NP W L+
Sbjct: 393 DELNPYVAWRLLDISA 408
>gi|188591179|ref|YP_001795779.1| hypothetical protein RALTA_A0388 [Cupriavidus taiwanensis LMG
19424]
gi|170938073|emb|CAP63057.1| conserved hypothetical protein, COG4395 [Cupriavidus taiwanensis
LMG 19424]
Length = 327
Score = 92.7 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/219 (11%), Positives = 63/219 (28%), Gaps = 16/219 (7%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER-GIITLGKGKKKDNL 71
++L A + F +R G K + ++G + + +
Sbjct: 122 LILIALVAFAAIWLIRKFRGSKRAAQPAYAGAGGAPNLGRNAEPMFRGEPTPVSSGSQSA 181
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
+ V + V DFD + FL A+ + + ++ G + I +
Sbjct: 182 SPVLPASAAPVAAGAVAQQPWGVPADFDTESFLRNAKVHFVRLQAAWDAGNLDDIREFTT 241
Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
+ F + V + V + +++ ++R
Sbjct: 242 PEM---FAEIKMDLAERGAEVNKTDVVTLEAQLLGIESSPAQHLASVRF----------- 287
Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++ E ++W + + N W+L +
Sbjct: 288 SGMIREKAGEAAQPFGEVWNLAKPV-SGNGGWLLAGIQQ 325
>gi|195388820|ref|XP_002053076.1| GJ23681 [Drosophila virilis]
gi|194151162|gb|EDW66596.1| GJ23681 [Drosophila virilis]
Length = 428
Score = 92.7 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/176 (15%), Positives = 70/176 (39%), Gaps = 3/176 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEA 113
+ + D + + T L++ M ++V + +FD K+FL + ++
Sbjct: 243 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPNFDQKEFLYDCEKDIIPN 302
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
++++ G + ++ Y + K + + S ++ I+++++ + E
Sbjct: 303 VLEAIVRGDLEILKDWCFESTYNIIATPIMQAKKSGLYLDSKILDIENIELAMGKVMEQG 362
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ I Q I D+ ++ +P+ +V +W R+ NP W L+
Sbjct: 363 PVLIITFQAQQIMCVRDQKAQVVEGNPDKVMRVHYVWVLCRDRNELNPKAAWRLME 418
>gi|217968675|ref|YP_002353909.1| import inner membrane translocase subunit Tim44 [Thauera sp. MZ1T]
gi|217506002|gb|ACK53013.1| import inner membrane translocase subunit Tim44 [Thauera sp. MZ1T]
Length = 294
Score = 92.7 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/228 (11%), Positives = 72/228 (31%), Gaps = 26/228 (11%)
Query: 5 KMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK 64
+F+++L F +L G ++P +
Sbjct: 93 GEGFANFVMILLLAAAAFFVFRLIFRRGANAAAQQPARDLQYAGAPAGAAQQARPQQFEA 152
Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
G+ G ++ ++ + FD + F +A+ ++ + + G +
Sbjct: 153 GRPL-----------AGGSVSAQSGLDKALASGFDAEGFARQAKLNFIRLQAANDAGNLD 201
Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
+ + V+ + ++ RK + + V + ++I+ + E + +++R
Sbjct: 202 DLREFTTPEVFAELCMQVNERKGAGQR---TDVVELNAQVIDVAEENDRYVVSVRF---- 254
Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
LL +IW + + S W++ + +
Sbjct: 255 -------SGLLREQAEAAPEAFDEIWHLSKPLAGSGG-WLIAGIQQSQ 294
>gi|194746677|ref|XP_001955803.1| GF18940 [Drosophila ananassae]
gi|190628840|gb|EDV44364.1| GF18940 [Drosophila ananassae]
Length = 461
Score = 92.7 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 30/176 (17%), Positives = 68/176 (38%), Gaps = 3/176 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ + D + + T L++ M ++V + FD K+FL++
Sbjct: 276 ESENPMIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKEFLHDCETDIIPN 335
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I+++ G + ++ + ++ K + S ++ I+++++ + E
Sbjct: 336 ILEAIVRGDLEILKDWCFESTFNIIATPITQAKKAGLYLDSKILDIENIELAMGKVMEQG 395
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ I Q I D+ ++ DPE +V +W R+ NP W L+
Sbjct: 396 PVLIITFQAQQIMCVRDQKAQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 451
>gi|321466881|gb|EFX77874.1| hypothetical protein DAPPUDRAFT_305300 [Daphnia pulex]
Length = 420
Score = 92.7 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/192 (13%), Positives = 67/192 (34%), Gaps = 3/192 (1%)
Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF 98
K + + + + + I T +++ + +I + DF
Sbjct: 219 KNPYVNKVLDWKNKYEESDNAVIRASRLLTEKVVDIMGGLFQKTEMSEALTEICKMDPDF 278
Query: 99 DPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157
++FL + + ++++ G + ++ + + + S + ++
Sbjct: 279 SKEEFLKKCEYDIIPNVLEAMARGDLDILKDWCHEGPFNILSTPIKHALSQGYVIDCRVL 338
Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217
+D++ + + E + I Q I DK N ++ D E +V +W R+
Sbjct: 339 DVDNVDLAMGKVMEQGPILVITFTAQQIMCVRDKANNIVEGDAEKVMRVNYVWVLCRDQT 398
Query: 218 PSNPN--WVLIS 227
+ N W L+
Sbjct: 399 ELDVNAAWRLMD 410
>gi|297703381|ref|XP_002828619.1| PREDICTED: mitochondrial import inner membrane translocase subunit
TIM44-like [Pongo abelii]
Length = 451
Score = 92.7 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/196 (13%), Positives = 67/196 (34%), Gaps = 3/196 (1%)
Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
E + + D + + T +++V+ +I+ V
Sbjct: 249 ENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPA 308
Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
FD FL + N ++++ G++ ++ Y + K+ S +
Sbjct: 309 FDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRI 368
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
+ ID++ + + E + I Q + + ++ +P+ +++ +W R+
Sbjct: 369 LDIDNIDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGNPDEVLRMLYVWALCRDQ 428
Query: 217 PPSNP--NWVLISTKL 230
NP W L+
Sbjct: 429 DELNPYAAWRLLDISA 444
>gi|63093892|dbj|BAD98173.1| hypothetical protein [Drosophila parabipectinata]
Length = 428
Score = 92.7 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 31/176 (17%), Positives = 68/176 (38%), Gaps = 3/176 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ + D + + T L++ M ++V + FD K+FL++
Sbjct: 243 ESENPMIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKEFLHDCETDIIPN 302
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I+++ G + ++ Y ++ K + S ++ I+++++ + E
Sbjct: 303 ILEAIVRGDLEILKDWCFESTYNIIATPITQAKKAGLYLDSKILDIENIELAMGKVMEQG 362
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ I Q I D+ ++ DPE +V +W R+ NP W L+
Sbjct: 363 PVLIITFQAQQIMCVRDQKAQVVEGDPEKVMRVHYVWVLCRDRNELNPKAAWRLME 418
>gi|291411565|ref|XP_002722049.1| PREDICTED: translocase of inner mitochondrial membrane 44
[Oryctolagus cuniculus]
Length = 452
Score = 92.3 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/196 (14%), Positives = 68/196 (34%), Gaps = 3/196 (1%)
Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
E + + + D + + T +++V+ +I+ V
Sbjct: 250 ENNVVFNRFFEMKMKYDESDNALIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPA 309
Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
FD FL + N I+++ G++ ++ Y + K+ S +
Sbjct: 310 FDKDRFLQQCENDIIPNILEAMISGELDILKDWCYEATYSQLAHPIQQAKALGFQFHSRI 369
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
+ +D++ + + E + I Q + + ++ DP+ +++ +W R+
Sbjct: 370 LDVDNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEGDPDKVLRMLYVWALCRDQ 429
Query: 217 PPSNP--NWVLISTKL 230
NP W L+
Sbjct: 430 DELNPYAAWRLLDVSA 445
>gi|254251433|ref|ZP_04944751.1| hypothetical protein BDAG_00618 [Burkholderia dolosa AUO158]
gi|124894042|gb|EAY67922.1| hypothetical protein BDAG_00618 [Burkholderia dolosa AUO158]
Length = 341
Score = 92.3 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/234 (11%), Positives = 65/234 (27%), Gaps = 26/234 (11%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFS------KRDE 56
F M + +I L A + ++ R + ++ E +S + +
Sbjct: 124 FAGMMANFIVIALLAMVGIWLI---RKFMNRRRPQEPAYSVGGASSSGSYSQGSSFQPGS 180
Query: 57 RGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116
G + V + V FD + FL A+ + +
Sbjct: 181 SSNYAGGSSYANEAQRVFGGGAASAAPAAGVAAPALQVPAGFDTEAFLRSAKVYFVRLQA 240
Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
++ +G + I + + F + S + V D +++
Sbjct: 241 AWDQGNLTDIREFTTPEM---FAEIKIDLDSRGNEANQTDVVQLDAELVAIEDRGIEQSA 297
Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++R L+ S ++W + + W+L +
Sbjct: 298 SVRFH-----------GLIRESANASAEPFDEVWNLSK---SGSQGWLLAGIQQ 337
>gi|89073249|ref|ZP_01159779.1| hypothetical protein SKA34_19790 [Photobacterium sp. SKA34]
gi|89050959|gb|EAR56423.1| hypothetical protein SKA34_19790 [Photobacterium sp. SKA34]
Length = 291
Score = 92.3 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 31/227 (13%), Positives = 81/227 (35%), Gaps = 29/227 (12%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVL---GKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
IL+ I F +F + + G G+ + ++G + + + T
Sbjct: 91 GIQFMDILIIGVIAFVLFKLFKAMRTNKGTSMGHRESYAGNSPRQQPQQAQQQYRQATGS 150
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
+ + ++ + ++ +F+ FL+ +R+ Y I ++ ++
Sbjct: 151 QSQPQNGGFESTDS-----------DVPFNLPPNFNMNSFLSGSRDHYRIIQGAWNHNEL 199
Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
I++ V S ++ D + + + V D +++ A + N+ ++I+
Sbjct: 200 AKIKEYVSSALFADLQAERAKLSGE----QHTEVMYVDAELVRADYDANSAQLSIQF--- 252
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
S I + D+W R++ N W+++ +
Sbjct: 253 --------SGRYKDSQEGIEEDINDVWHLERDLKTPNAPWLIVGIQA 291
>gi|301773124|ref|XP_002921985.1| PREDICTED: mitochondrial import inner membrane translocase subunit
TIM44-like, partial [Ailuropoda melanoleuca]
Length = 452
Score = 92.3 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 62/152 (40%), Gaps = 3/152 (1%)
Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
T +++V+ +I+ V FD + FL + N ++++ G++ ++ Y
Sbjct: 294 TEMSEVLTEILRVDPAFDKERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 353
Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
+ ++ S ++ ID++ + + E + I Q + + ++ DP
Sbjct: 354 PIQQARALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEGDP 413
Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
+ +++ +W R+ NP W L+
Sbjct: 414 DKVLRMLYVWALCRDQDELNPYAAWRLLDISA 445
>gi|317487361|ref|ZP_07946152.1| Tim44-like domain-containing protein [Bilophila wadsworthia 3_1_6]
gi|316921384|gb|EFV42679.1| Tim44-like domain-containing protein [Bilophila wadsworthia 3_1_6]
Length = 318
Score = 92.3 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 68/221 (30%), Gaps = 16/221 (7%)
Query: 12 LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71
I+L + F F G +P +G F D T K
Sbjct: 112 DIILIGGLLFLAFKFFSRRRAATQGAGQPNAGGFDSLRSTPGSDSTHQRTAAPQSGKGGF 171
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
D L + + +D FD ++FL A+ +Y + +++ + + I +
Sbjct: 172 D-WEALTTPSSGQQPLYQDEPKKPAGFDEEEFLRGAKAAYTRLNNAWDKRDLSDIAQFST 230
Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
F + + + +K ++ + + + +++ + +
Sbjct: 231 PA----FQKEIQQQAAEDKTPGNTEIMLVNASLLSVDTVGDEQIAQVYFNVLLRE----- 281
Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
E V +IW FVR + W L + E
Sbjct: 282 -----DPSQEAPIDVREIWHFVRP-ASGDGTWKLDGIQQVE 316
>gi|297275995|ref|XP_001098363.2| PREDICTED: mitochondrial import inner membrane translocase subunit
TIM44 [Macaca mulatta]
Length = 461
Score = 92.3 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 3/196 (1%)
Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
E + + D + + T +++V+ +I+ V
Sbjct: 259 ENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPA 318
Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
FD FL + N ++++ G++ ++ Y + K+ S +
Sbjct: 319 FDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAYPIQQAKALGLQFHSRI 378
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
+ ID++ + + E + I Q + + ++ DP+ +++ +W R+
Sbjct: 379 LDIDNIDLAMGKMMEPGPVLIITFQAQLVVVVRNPKGEVVEGDPDKVLRMLYVWALCRDQ 438
Query: 217 PPSNP--NWVLISTKL 230
NP W L+
Sbjct: 439 DELNPYAAWRLLDISA 454
>gi|311248590|ref|XP_003123248.1| PREDICTED: mitochondrial import inner membrane translocase subunit
TIM44-like [Sus scrofa]
Length = 454
Score = 91.9 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 62/152 (40%), Gaps = 3/152 (1%)
Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
T +++V+ +I+ V FD + FL + N ++++ G++ ++ Y
Sbjct: 296 TEMSEVLTEILRVDPAFDKERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 355
Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
+ K+ S ++ ID++ + + E + I Q + + ++ DP
Sbjct: 356 PIQQAKALGLQFHSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEGDP 415
Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
+ +++ +W R+ NP W L+
Sbjct: 416 DKVLRMLYVWALCRDQDELNPYAAWRLLDISA 447
>gi|47225693|emb|CAG08036.1| unnamed protein product [Tetraodon nigroviridis]
Length = 397
Score = 91.9 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 3/179 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ + D + + T +++V+ +I+ V FD FL
Sbjct: 212 ESDNALIRASRAVTDKMSDLIGGLFSKTEMSEVLTEILKVDPSFDKDSFLKLCERDIIPN 271
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I+++ +G++ ++ Y + K+ S ++ ID++ + + +
Sbjct: 272 ILEAMIQGELDVLKDWCYEATYSQLAHPIQQAKATGLKFHSKILDIDNIDLAMGKMMDQG 331
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
+ I Q + + ++ DP+ +++ +W R+ NP W L+
Sbjct: 332 PVLIITFQAQLVMVIRNPKGEVVEGDPDKVIRMMYVWALCRDQEELNPYAAWRLLDISA 390
>gi|85544427|pdb|2CW9|A Chain A, Crystal Structure Of Human Tim44 C-Terminal Domain
Length = 194
Score = 91.9 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 62/179 (34%), Gaps = 3/179 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ D + + T ++V+ +I+ V FD FL + N
Sbjct: 9 ESDNAFIRASRALTDKVTDLLGGLFSKTEXSEVLTEILRVDPAFDKDRFLKQCENDIIPN 68
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
++++ G++ ++ Y + K+ S ++ ID++ + E
Sbjct: 69 VLEAXISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAXGKXVEQG 128
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
+ I Q + + ++ DP+ + + +W R+ NP W L+
Sbjct: 129 PVLIITFQAQLVXVVRNPKGEVVEGDPDKVLRXLYVWALCRDQDELNPYAAWRLLDISA 187
>gi|115923274|ref|XP_783807.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
gi|115954833|ref|XP_001197316.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
Length = 368
Score = 91.9 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 29/193 (15%), Positives = 63/193 (32%), Gaps = 3/193 (1%)
Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
E + I+ D + + T L+ V+ +I+ +
Sbjct: 166 ENNQVFNKMFDLKMRYDESDNIMVRASKAVTDRVSQLLGGVFSPTELSGVLTEIIKIDPT 225
Query: 98 FDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
F + FL I+++ G + I+ Y + S +
Sbjct: 226 FTKEGFLKMCELEIIPNILEAMIRGDLEIIKDWCYEAPYNQLATPIKQATQMGYKFDSKV 285
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
+ +D +++ + + + I V Q I A + +++ D E +V +W R+
Sbjct: 286 LDVDMVELSMGKMMDQGPVLVITFVAQQIMAVRNAKGVVVEGDLEKVMRVTYVWVLCRDQ 345
Query: 217 PPSNPN--WVLIS 227
+P W L+
Sbjct: 346 EVLDPTSAWRLLD 358
>gi|115624784|ref|XP_001203738.1| PREDICTED: similar to MGC82677 protein [Strongylocentrotus
purpuratus]
gi|115633997|ref|XP_001177162.1| PREDICTED: similar to MGC82677 protein [Strongylocentrotus
purpuratus]
Length = 455
Score = 91.9 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 29/193 (15%), Positives = 63/193 (32%), Gaps = 3/193 (1%)
Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
E + I+ D + + T L+ V+ +I+ +
Sbjct: 253 ENNQVFNKMFDLKMRYDESDNIMVRASKAVTDRVSQLLGGVFSPTELSGVLTEIIKIDPT 312
Query: 98 FDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
F + FL I+++ G + I+ Y + S +
Sbjct: 313 FTKEGFLKMCELEIIPNILEAMIRGDLEIIKDWCYEAPYNQLATPIKQATQMGYKFDSKV 372
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
+ +D +++ + + + I V Q I A + +++ D E +V +W R+
Sbjct: 373 LDVDMVELSMGKMMDQGPVLVITFVAQQIMAVRNAKGVVVEGDLEKVMRVTYVWVLCRDQ 432
Query: 217 PPSNPN--WVLIS 227
+P W L+
Sbjct: 433 EVLDPTSAWRLLD 445
>gi|78355820|ref|YP_387269.1| hypothetical protein Dde_0773 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78218225|gb|ABB37574.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 301
Score = 91.9 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 35/221 (15%), Positives = 72/221 (32%), Gaps = 22/221 (9%)
Query: 12 LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71
ILLF + +FL LR + ++ G + + + +
Sbjct: 102 DILLFGGV---IFLILRMM--RRRGA-PRGEPAYQAGGAYQGGASHDVRQHDNTMYRQAQ 155
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
D + L G+ V FD ++FL AR+ Y + +S+ + I
Sbjct: 156 DGWSGLRSAGSGSPSSAAPAPEVPAGFDTEEFLQGARSVYTRLQNSWDNRDLDDIRTFTS 215
Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
V+ + + + + + + + +++ E + + T+ D
Sbjct: 216 PSVFDEIHRQAQD----DPQPSRTELLLINARVLEVKEETDGMLATVYFDVLMRE---DA 268
Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+PE V ++W F R + W L + E
Sbjct: 269 SG----GNPEQ---VREVWHFHR--ATPDAMWRLDGIQQLE 300
>gi|90579259|ref|ZP_01235069.1| hypothetical protein VAS14_06118 [Vibrio angustum S14]
gi|90440092|gb|EAS65273.1| hypothetical protein VAS14_06118 [Vibrio angustum S14]
Length = 291
Score = 91.9 bits (226), Expect = 7e-17, Method: Composition-based stats.
Identities = 29/227 (12%), Positives = 80/227 (35%), Gaps = 29/227 (12%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVL---GKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
IL+ I F +F + + G G+ + ++G + + + T
Sbjct: 91 GIQFMDILIIGVIAFVLFKLFKAMRANKGTPMGHRESYAGNSPRQQPQQAQQQYRQATGS 150
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
+ + ++ + ++ +F+ FL+ +R+ Y I ++ ++
Sbjct: 151 QSQPQNGGFESTDS-----------DVPFNLPPNFNMNAFLSGSRDHYRIIQGAWNHNEL 199
Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
I++ V ++ D + + + V D +++ A + N+ ++I+
Sbjct: 200 AKIKEYVSPALFADLQAERAKLSGE----QHTEVMYVDAELVRADYDANSAQLSIKF--- 252
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ I + D+W R++ N W+++ +
Sbjct: 253 --------SGRYKDTQEGIEEDINDVWHLERDLKTPNAPWLIVGIQA 291
>gi|326934236|ref|XP_003213198.1| PREDICTED: mitochondrial import inner membrane translocase subunit
TIM44-like [Meleagris gallopavo]
Length = 435
Score = 91.5 bits (225), Expect = 8e-17, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 3/179 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ D + + T +++V+ +I+ V FD FL +
Sbjct: 250 ESDNAFIRASRAVTDKVTDLIGGLFSKTEMSEVLTEILKVDPSFDKDRFLKQCERDIIPN 309
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
++++ G++ ++ Y + K+ S ++ ID++ + + E
Sbjct: 310 VLEAMISGELDILKDWCYEATYSQLAHPIQQAKAMGLQFHSRILDIDNIDLAMGKMMEQG 369
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
+ I Q + ++ ++ DP+ +++ +W R+ NP W L+
Sbjct: 370 PVLIITFQAQVVMVIKNQKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRLLDISS 428
>gi|56753483|gb|AAW24945.1| SJCHGC05805 protein [Schistosoma japonicum]
Length = 417
Score = 91.5 bits (225), Expect = 8e-17, Method: Composition-based stats.
Identities = 30/194 (15%), Positives = 65/194 (33%), Gaps = 3/194 (1%)
Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
E + + +I D + S+ F I L +V+ ++ +
Sbjct: 215 ENNPYVQRFFDLKANYEESDHLIVRSLRFVTDKVSSLFGGFKINNELQEVLDEVTKMDPS 274
Query: 98 FDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
F+ + F+ R ++++ + ++ + L K +S +
Sbjct: 275 FNLESFIRYCRFVVIPNVLEAIVRVDLPILQDWCHEAPFNVLATPLRQIKELGYVSESRI 334
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
+ I ++ + I E + I Q I DK+ + DP +V +W R+
Sbjct: 335 LDIHNVDVQMGKIMEQGPVLIITFQAQQIHCIRDKNGTVHEGDPNKVLRVTHVWALCRDQ 394
Query: 217 PPSNP--NWVLIST 228
+P W L+
Sbjct: 395 SEMHPLAAWRLLDI 408
>gi|113866475|ref|YP_724964.1| hypothetical protein H16_A0446 [Ralstonia eutropha H16]
gi|113525251|emb|CAJ91596.1| hypothetical membrane spanning protein [Ralstonia eutropha H16]
Length = 329
Score = 91.5 bits (225), Expect = 8e-17, Method: Composition-based stats.
Identities = 27/224 (12%), Positives = 62/224 (27%), Gaps = 21/224 (9%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKY------VFSKRDERGIITLGKGK 66
++L A + F +R G ++P R E ++ G
Sbjct: 119 LILIALVAFAAIWLIRKFRGGSKRTQQPAYAGAGNAPNLGRSAEPMFRGEPTPVSSGSPA 178
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ + V + V DFD + FL A+ + + ++ G + I
Sbjct: 179 GPAANTVLPAASAAPVAADAVAQQPWGVPADFDTEAFLRNAKVHFVRLQAAWDAGNLDDI 238
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ + F + V + V + +++ ++R
Sbjct: 239 REFTTPEM---FAEIKMDLADRGAEVNKTDVVTLEAQLLGIESAAAQHIASVRF------ 289
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++ E ++W + W+L +
Sbjct: 290 -----SGMIREKSGEAAQPFGEVWNLAKP-ASGTGGWLLAGIQQ 327
>gi|329847374|ref|ZP_08262402.1| tim44-like domain protein [Asticcacaulis biprosthecum C19]
gi|328842437|gb|EGF92006.1| tim44-like domain protein [Asticcacaulis biprosthecum C19]
Length = 212
Score = 91.5 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 47/234 (20%), Positives = 92/234 (39%), Gaps = 34/234 (14%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
+++FA + + QL VLG+K G KG
Sbjct: 1 MVALIIFAIVAVVILFQLYNVLGRKVGF-----------------RAEDKPVTVKGDDFG 43
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+L + + P +R+ + + + +F+ +FL +AR SYE +V +F +G++ A++
Sbjct: 44 DLSTKTDKLPEASRM-PNLEMLKTRDANFNELNFLEKARESYEQVVIAFHKGELDAVKDK 102
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+ VY F +L R + E+ + S V I + ++ I +R + + Y
Sbjct: 103 LSDTVYGIFAKALVGRAAPEETL--SFVDQPKADIDHIDFKDEVAQIRVRFLSEL---VY 157
Query: 190 DKDNLLISSD--PEIF---------GKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+K S P + + WTF + + +N W+L + +
Sbjct: 158 EKTEAPAESAVPPTKADAPKVHRSHKRTAEYWTFQKGMKVANSPWLLTKVEAAK 211
>gi|149015618|gb|EDL74999.1| translocator of inner mitochondrial membrane 44, isoform CRA_b
[Rattus norvegicus]
Length = 453
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 66/179 (36%), Gaps = 3/179 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ ++ D + + T +++V+ +I+ V FD FL++
Sbjct: 268 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDRFLHQCETDIIPN 327
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I+++ G++ ++ Y S+ K+ S ++ I ++ + + E
Sbjct: 328 ILEAMISGELDILKDWCYEATYNQLAHSIQQAKALGLQFHSRILDISNVDLAMGKMMEQG 387
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
+ + Q + + + DP+ +++ +W R+ NP W L+
Sbjct: 388 PVLIVTFQAQLVMVIKNPKGEVFDGDPDKVLRMLYVWALCRDQEELNPYAAWRLLDISA 446
>gi|298292408|ref|YP_003694347.1| import inner membrane translocase subunit Tim44 [Starkeya novella
DSM 506]
gi|296928919|gb|ADH89728.1| import inner membrane translocase subunit Tim44 [Starkeya novella
DSM 506]
Length = 331
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/231 (15%), Positives = 72/231 (31%), Gaps = 12/231 (5%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLG-KKTGNEKPFSGFFSGKYVFSKRDERGIIT 61
F + S ++ L I V +R V+G ++ N+ S + +R+
Sbjct: 111 FSGLGSLAGILGLLLQIALVVI-VVRLVMGWMRSRNQ--PSYAGGARPDPMQREALNGGA 167
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
G R D F E I ++
Sbjct: 168 PMGGAPMGGAPMGGAGAAPRAGFGTGPRGRPIQLQGSDFDTF----ERRLEEIQTAYGRA 223
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
+ +L + + L + + + V + + A E+ + Y T+ +
Sbjct: 224 DRDTLLRLATPEMGGYLREELDQLERDGLENRLGDVKLLQGDLSEAWAEDGSEYATVAMR 283
Query: 182 GQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ +K ++ DP +V++ WTFVR W+L + + G
Sbjct: 284 YELTDVIVEKATGRIVQGDPSRKEQVVEFWTFVR---SPGGEWLLSAIQQG 331
>gi|8394449|ref|NP_058963.1| mitochondrial import inner membrane translocase subunit TIM44
precursor [Rattus norvegicus]
gi|6016370|sp|O35094|TIM44_RAT RecName: Full=Mitochondrial import inner membrane translocase
subunit TIM44; Flags: Precursor
gi|2335041|dbj|BAA21820.1| Tim44 [Rattus norvegicus]
Length = 453
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 66/179 (36%), Gaps = 3/179 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ ++ D + + T +++V+ +I+ V FD FL++
Sbjct: 268 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDRFLHQCETDIIPN 327
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I+++ G++ ++ Y S+ K+ S ++ I ++ + + E
Sbjct: 328 ILEAMISGELDILKDWCYEATYNQLAHSIQQAKALGLQFHSRILDISNVDLAMGKMMEQG 387
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
+ + Q + + + DP+ +++ +W R+ NP W L+
Sbjct: 388 PVLIVTFQAQLVMVIKNPKGEVFDGDPDKVLRMLYVWALCRDQEELNPYAAWRLLDISA 446
>gi|224062145|ref|XP_002300777.1| predicted protein [Populus trichocarpa]
gi|222842503|gb|EEE80050.1| predicted protein [Populus trichocarpa]
Length = 484
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 19/166 (11%), Positives = 56/166 (33%), Gaps = 8/166 (4%)
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
+++ + ++I F DF+ E + + +++++ +G + ++K
Sbjct: 313 QDVSDSIFQESDAAASFKEIRRKDPSFSLMDFVAEVQEAVRPVLNAYIKGDIDTLKKYCT 372
Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
V +++ + ++ I D+++ + + I + Q + D+
Sbjct: 373 PEVINRCEAEHKAFQAHGIFFDNKILHITDVEVRETKMMGTSPIIIVVFQTQQVHCVRDR 432
Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPS-------NPNWVLISTKL 230
+ + V W R + P W L+ +
Sbjct: 433 HGAITEGGQDTIHTVYYAWAM-RQVDAEELGGGAIYPIWKLMEMQQ 477
>gi|226480686|emb|CAX73440.1| Import inner membrane translocase subunit TIM44, mitochondrial
precursor [Schistosoma japonicum]
Length = 417
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/194 (14%), Positives = 64/194 (32%), Gaps = 3/194 (1%)
Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
E + + +I D + S+ F L +V+ ++ +
Sbjct: 215 ENNPYVQRFFDLKANYEESDHLIVRSLRFVTDKVSSLFGGFKSTNELQEVLDEVTKMDPS 274
Query: 98 FDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
F+ + F+ R ++++ + ++ + L K +S +
Sbjct: 275 FNLESFIRYCRFVVIPNVLEAIVRVDLPILQDWCHEAPFNVLATPLRQIKELGYVSESRI 334
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
+ I ++ + I E + I Q I DK+ + DP +V +W R+
Sbjct: 335 LDIHNVDVQMGKIMEQGPVLIITFQAQQIHCIRDKNGTVHEGDPNKVLRVTHVWALCRDQ 394
Query: 217 PPSNP--NWVLIST 228
+P W L+
Sbjct: 395 SEMHPLAAWRLLDI 408
>gi|148690048|gb|EDL21995.1| translocase of inner mitochondrial membrane 44, isoform CRA_d [Mus
musculus]
Length = 321
Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 65/179 (36%), Gaps = 3/179 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ ++ D + + T +++V+ +I+ V FD FL++
Sbjct: 136 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQCETDIIPN 195
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I+++ G++ ++ Y + K+ S ++ I ++ + + E
Sbjct: 196 ILEAMISGELDILKDWCYEATYSQLAHPIQQAKALGFQFHSRILDISNVDLAMGKMMEQG 255
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
+ + Q + + + DP+ +++ +W R+ NP W L+
Sbjct: 256 PVLIVTFQAQVVMVIKNSKGEVYDGDPDKVQRMLYVWALCRDQEELNPYAAWRLLDISA 314
>gi|88858066|ref|ZP_01132708.1| hypothetical protein PTD2_11789 [Pseudoalteromonas tunicata D2]
gi|88819683|gb|EAR29496.1| hypothetical protein PTD2_11789 [Pseudoalteromonas tunicata D2]
Length = 283
Score = 90.8 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/223 (14%), Positives = 74/223 (33%), Gaps = 35/223 (15%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
+LL A + F +F ++ V+ K ++ +G S V R T G
Sbjct: 92 GLQIMDMLLMALLAFVIFKVVKMVMAKNRQSQPMPAGGPSINPVEQTPQYRENTTGGFAT 151
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+D++ ++ + FD FL AR+ Y + ++ + I
Sbjct: 152 SQDHVPF-------------------NLPSGFDTTAFLQGARDHYHTLQKAWNNNDLTTI 192
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
E+ V ++ + + ++ V D ++ A +++R
Sbjct: 193 EEYVSPALFNELKAERADVAD-----VATEVLFLDAELARADSSPILWEVSVRF------ 241
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
+ ++W R++ SN W+++ +
Sbjct: 242 -----KGKYRDLGDTQEEMINEVWHLERDMRQSNAPWLIVGIE 279
>gi|255567254|ref|XP_002524608.1| mitochondrial import inner membrane translocase subunit tim44,
putative [Ricinus communis]
gi|223536161|gb|EEF37816.1| mitochondrial import inner membrane translocase subunit tim44,
putative [Ricinus communis]
Length = 486
Score = 90.8 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/196 (12%), Positives = 61/196 (31%), Gaps = 6/196 (3%)
Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100
S K D R + +++ T ++I F
Sbjct: 284 ISEPVVTKSQEIAEDMRERWETSDNPIVHKIQDVSDTIFQETDAAASFKEIRRRDPSFSL 343
Query: 101 KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160
DF+ E + + +++++ +G + ++K S V +S+ + ++ I
Sbjct: 344 MDFVAEVQEAVRPVLNAYIKGDLETLKKYCTSEVITRCEAEHKAFQSHGIFFDNKILHIS 403
Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI---- 216
++++ + + I + Q + D+D + + V W +
Sbjct: 404 EVEVRETKMMGTSPIIIVAFQTQQVHCVRDRDGAITEGGQDTIHTVYYAWAMQQVEPEEL 463
Query: 217 --PPSNPNWVLISTKL 230
P W L +
Sbjct: 464 GGGAIYPIWKLREMQQ 479
>gi|242051390|ref|XP_002463439.1| hypothetical protein SORBIDRAFT_02g043830 [Sorghum bicolor]
gi|241926816|gb|EER99960.1| hypothetical protein SORBIDRAFT_02g043830 [Sorghum bicolor]
Length = 474
Score = 90.8 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/224 (13%), Positives = 63/224 (28%), Gaps = 20/224 (8%)
Query: 28 RGVLGKK-TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFP------- 79
R VLG+K + G K V + ++
Sbjct: 245 RTVLGEKWEAFKNKIQGHPVYKRVDEYTKPVVTKGQEVAEDVRERWETSDNPVVQKIQDL 304
Query: 80 -----IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134
T R+I F DF+ + + + + ++ ++ +G V ++K V
Sbjct: 305 NESLLEETSAAVTFREIRQRDPSFSLSDFVADVQETIKPVLTAYSKGDVETLKKYCTKEV 364
Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNL 194
+ S ++ I + ++ + ++ I +R Q I D++
Sbjct: 365 IERCKGEREAYASQGIFFDHKILHISEADVLETKMFGSSPIIILRFQTQQIYCVRDREGQ 424
Query: 195 LISSDPEIFGKVIDIWTFV-------RNIPPSNPNWVLISTKLG 231
+ + V W P W L +
Sbjct: 425 VTEGGQDTIQTVFYSWAMQLMDSDEVPEEESYYPVWRLREMQQA 468
>gi|325981336|ref|YP_004293738.1| import inner membrane translocase subunit Tim44 [Nitrosomonas sp.
AL212]
gi|325530855|gb|ADZ25576.1| import inner membrane translocase subunit Tim44 [Nitrosomonas sp.
AL212]
Length = 285
Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/229 (11%), Positives = 69/229 (30%), Gaps = 31/229 (13%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F ++ D + +L F ++ + +K E+ S +SG ++ +
Sbjct: 87 FENINMMDIVTMLLLIGAVFFIIR----MLRKPKVEQSPSMQYSGMNTNTRENFNTPAFT 142
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
P ++ DF + FL A+ S+ + + G
Sbjct: 143 PSAGTTVADSQAAHRQP-------------NIPADFKVEPFLRHAKASFMRLQAAHDHGD 189
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
++ I + + + ++ R ++ + + D ++ + ++R
Sbjct: 190 INEIRDYTTPEMLAEISAQINERGDAQQTTEIMFI---DANLLEVETAGDLAIASVRF-- 244
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
L +IW +++ + W+L +
Sbjct: 245 ---------TGQLKDLPDSEPEAFDEIWHVQKDLKDPDATWLLAGIQQA 284
>gi|198435825|ref|XP_002124932.1| PREDICTED: similar to translocase of inner mitochondrial membrane
44 homolog [Ciona intestinalis]
Length = 431
Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 67/176 (38%), Gaps = 3/176 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
+ ++ G D + + GT ++KVM +I + +F + FL+ R
Sbjct: 246 ESDNVLIRGSRFITDKISGVAGSLFGGTDISKVMTEIARIDPEFSAQGFLDFCRFEIIPN 305
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
++++ +G + ++ Y + + + + V +D + I A+ +
Sbjct: 306 LLEAISQGNENIVKDWCSEAPYNQLMFPVKQAQQIGCRYELTTVDLDHVDIAGATKVDQG 365
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN--PNWVLIS 227
+ I Q I +K ++ D + KV +W R++ + W +I
Sbjct: 366 PVLVISFQTQQIMVVRNKKGDIVEGDSDQIMKVFHVWALCRDVEEMDRRAAWKIID 421
>gi|212722222|ref|NP_001131676.1| hypothetical protein LOC100193036 [Zea mays]
gi|194692218|gb|ACF80193.1| unknown [Zea mays]
Length = 474
Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/191 (13%), Positives = 54/191 (28%), Gaps = 7/191 (3%)
Query: 48 KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107
K D R + +NE T R+I F DF+ +
Sbjct: 278 KGQEVAEDVRERWETSDNPVVQKIQDLNESLLEETSAAVTFREIRQRDPSFSLSDFVADV 337
Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167
+ + ++ ++ +G ++ V + S ++ I + ++
Sbjct: 338 QEMIKPVLTAYSKGDAETLKNYCTKEVIERCKGEREAYASQGIFFDHKILHISEADVLET 397
Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV-------RNIPPSN 220
+ ++ I +R Q I D++ + + V W
Sbjct: 398 KMFGSSPIIILRFQTQQIYCVRDREGQVTEGGQDTIQTVFYSWAMQLMDSDEVPEEESYY 457
Query: 221 PNWVLISTKLG 231
P W L +
Sbjct: 458 PVWRLREMQQA 468
>gi|90075058|dbj|BAE87209.1| unnamed protein product [Macaca fascicularis]
Length = 453
Score = 90.8 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 3/196 (1%)
Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
E + + D + + T +++V+ +I+ V
Sbjct: 251 ENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPA 310
Query: 98 FDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
FD FL + N ++++ G++ ++ Y + K+ S +
Sbjct: 311 FDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAYPIQQAKALGLQFHSRI 370
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
+ ID++ + + E + I Q + + ++ DP+ +++ +W R+
Sbjct: 371 LDIDNIDLAMGKMMEPGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALYRDQ 430
Query: 217 PPSNP--NWVLISTKL 230
NP W L+
Sbjct: 431 DELNPYAAWRLLDISA 446
>gi|281349988|gb|EFB25572.1| hypothetical protein PANDA_010903 [Ailuropoda melanoleuca]
Length = 405
Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 62/152 (40%), Gaps = 3/152 (1%)
Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
T +++V+ +I+ V FD + FL + N ++++ G++ ++ Y
Sbjct: 247 TEMSEVLTEILRVDPAFDKERFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 306
Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
+ ++ S ++ ID++ + + E + I Q + + ++ DP
Sbjct: 307 PIQQARALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVIKNPKGEVVEGDP 366
Query: 201 EIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
+ +++ +W R+ NP W L+
Sbjct: 367 DKVLRMLYVWALCRDQDELNPYAAWRLLDISA 398
>gi|167579860|ref|ZP_02372734.1| Tim44-like domain family protein [Burkholderia thailandensis TXDOH]
Length = 324
Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/234 (10%), Positives = 62/234 (26%), Gaps = 22/234 (9%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT-----GNEKPFSGFFSGKYVFSKRDER 57
F M + +I L A ++ + G + G + + G + +
Sbjct: 105 FASMMANVIVIALLAMAGIWLVRKFMNRRGAQQQPAYAGGQPSLNRDHGGYNQDAGAWRQ 164
Query: 58 GIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117
+ G V FD + FL A+ + + +
Sbjct: 165 AAPNGAFAGSGSTYAGEAQRVFGGAATAAAPAAAPMVPAGFDTEAFLRNAKVYFVRLQAA 224
Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
+ EG + I + + F + + V D +++ + +
Sbjct: 225 WDEGNLADIREFTTPEM---FAEVKIDLDGRGAGENQTDVVRLDAELLAVEDRGGEHFAS 281
Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+R ++ + ++W + + W+L +
Sbjct: 282 VRFH-----------GMIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQV 321
>gi|329114644|ref|ZP_08243403.1| Import Inner Membrane Translocase Subunit [Acetobacter pomorum
DM001]
gi|326696124|gb|EGE47806.1| Import Inner Membrane Translocase Subunit [Acetobacter pomorum
DM001]
Length = 337
Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 69/234 (29%), Gaps = 40/234 (17%)
Query: 3 FIKMDSG------DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDE 56
F M S I I ++ + TGN+ S F+
Sbjct: 135 FGGMHSFFSLIGLMIQIAFVVMIVMWLVRRF-------TGNKSSGSSHFA---------- 177
Query: 57 RGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116
N I N ++ + D + F + + I
Sbjct: 178 ------MGSGGVANAPGITPGAMPSAGGNASLQINTA-----DYQAF----QQTLMDIQT 222
Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
++ + + A++++ + FN+ LS S S V + A E +
Sbjct: 223 AWNQQNIPAMQQMATPEMVSYFNEQLSALASQGARNVVSDVHFIQGDLAEAWRENGMDFA 282
Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
T+ + I + + +I + ++WTF R W+L + +
Sbjct: 283 TVAMRYSLIDLTTNATGQVIQGSSTEPVNITELWTFTRP--SRGGRWLLSAIQQ 334
>gi|288959507|ref|YP_003449848.1| hypothetical protein AZL_026660 [Azospirillum sp. B510]
gi|288911815|dbj|BAI73304.1| hypothetical protein AZL_026660 [Azospirillum sp. B510]
Length = 365
Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/221 (13%), Positives = 68/221 (30%), Gaps = 13/221 (5%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
++++F F + R + + + + L +
Sbjct: 155 IILVVFLVRLAMRFFRNRS--------QTANTAASGSGPLGGNQPAYAGGPLNRDAADVG 206
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+ + G R + P DF I ++ V A+ +
Sbjct: 207 YNPMGNHGMGGGNAGPAPRRQAADEIGIQPADF-ESFERLLTTIQTAYGREDVEALRGVT 265
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
+ ++ F+D L+ ++ K S V + + E Y T+ + I + +
Sbjct: 266 TAEMFSYFSDDLAGNRNRGLVNKVSDVRLLQGDLAEGWREGPQEYATVAMRFSLIDVTVE 325
Query: 191 K-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ ++ + + ++WTFVR W L + +
Sbjct: 326 RASGRVVEGNASQPTEATELWTFVRQHGGQ---WRLSAIQQ 363
>gi|172061690|ref|YP_001809342.1| import inner membrane translocase subunit Tim44 [Burkholderia
ambifaria MC40-6]
gi|171994207|gb|ACB65126.1| import inner membrane translocase subunit Tim44 [Burkholderia
ambifaria MC40-6]
Length = 344
Score = 90.0 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/237 (13%), Positives = 66/237 (27%), Gaps = 29/237 (12%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F M + +I L A I ++ R + ++ E +S S
Sbjct: 124 FASMMANVIVIALLAMIGIWLV---RKFMNRRRSQEPAYSVGGSASSSGGYSQSPSFQQG 180
Query: 63 GKGKKKDNLDSINELFPIG---------TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
G S G + + V FD + FL A+ +
Sbjct: 181 STGNNYAGSGSSYANEAQGVFGGGAAAAGAAGAMAAAPLQVPAGFDTEAFLRSAKVYFVR 240
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
+ ++ +G + I + + F + S + V D +++
Sbjct: 241 LQAAWDQGNLADIREFTTPEM---FAEIKIDLDSRGNEANQTDVVQLDAELVAIEDRGIE 297
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++R L+ S + ++W + + W+L +
Sbjct: 298 QSASVRFH-----------GLIRESANAPAAPLDEVWNLSK---SGSQGWLLAGIQQ 340
>gi|293609901|ref|ZP_06692203.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292828353|gb|EFF86716.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325123134|gb|ADY82657.1| hypothetical protein BDGL_002071 [Acinetobacter calcoaceticus
PHEA-2]
Length = 323
Score = 90.0 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/223 (13%), Positives = 67/223 (30%), Gaps = 20/223 (8%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
+LL A + FFVF +L KK P++ +G+ F + G +
Sbjct: 119 IWVLLAAALAFFVFRKLGS--KKKLAGNNPYAPNSNGQNPFGRSAAPQAAPRNAGDNTNI 176
Query: 71 LDSINELFPIGTRLNKVMRDIV--SVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
+ + +P FL AR + I + I +
Sbjct: 177 FGQSVGGGAATQAPFGGVTTSNGNQLPDGSEPAAFLRIARQRFNHIQSMNTASNIEEIRR 236
Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
+ +Y + + + + + +++++ E +++R
Sbjct: 237 YLTPELYSSMYNDIMENQDQ----DVAEFSNLNAMVVDSATENGQYVVSVRF-------- 284
Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ + +IW FV+ +WV+ +
Sbjct: 285 ---TGTVSEDLNSLPQPFTEIWHFVKPAGSQQ-DWVVAGIQQA 323
>gi|115352833|ref|YP_774672.1| import inner membrane translocase subunit Tim44 [Burkholderia
ambifaria AMMD]
gi|115282821|gb|ABI88338.1| import inner membrane translocase, subunit Tim44 [Burkholderia
ambifaria AMMD]
Length = 344
Score = 90.0 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/237 (13%), Positives = 66/237 (27%), Gaps = 29/237 (12%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F M + +I L A I ++ R + ++ E +S S
Sbjct: 124 FASMMANVIVIALLAMIGIWLV---RKFMNRRRSQEPAYSVGGSASSSGGYSQSPSFQQG 180
Query: 63 GKGKKKDNLDSINELFPIG---------TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
G S G + + V FD + FL A+ +
Sbjct: 181 STGNNYAGSGSSYANEAQGVFGGGAAAAGAAGAMAAAPLQVPAGFDTEAFLRSAKVYFVR 240
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
+ ++ +G + I + + F + S + V D +++
Sbjct: 241 LQAAWDQGNLADIREFTTPEM---FAEIKIDLDSRGNEANQTDVVQLDAELVAIEDRGIE 297
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++R L+ S + ++W + + W+L +
Sbjct: 298 QSASVRFH-----------GLIRESANAPAAPLDEVWNLSK---SGSQGWLLAGIQQ 340
>gi|167617935|ref|ZP_02386566.1| Tim44-like domain family protein [Burkholderia thailandensis Bt4]
Length = 252
Score = 90.0 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/234 (10%), Positives = 62/234 (26%), Gaps = 22/234 (9%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT-----GNEKPFSGFFSGKYVFSKRDER 57
F M + +I L A ++ + G + G + + G + +
Sbjct: 33 FASMMANVIVIALLAMAGIWLVRKFMNRRGAQQQPAYAGGQPSLNRDHGGYNQDAGAWRQ 92
Query: 58 GIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117
+ G V FD + FL A+ + + +
Sbjct: 93 AAPNDAFAGSGSTYAGEAQRVFGGAATAAAPAAAPMVPAGFDTEAFLRNAKVYFVRLQAA 152
Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
+ EG + I + + F + + V D +++ + +
Sbjct: 153 WDEGNLADIREFTTPEM---FAEVKIDLDGRGAGENQTDVVRLDAELLAVEDRGGEHFAS 209
Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+R ++ + ++W + + W+L +
Sbjct: 210 VRFH-----------GMIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQV 249
>gi|257140227|ref|ZP_05588489.1| Tim44-like domain-contain protein [Burkholderia thailandensis E264]
Length = 324
Score = 90.0 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/234 (10%), Positives = 62/234 (26%), Gaps = 22/234 (9%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT-----GNEKPFSGFFSGKYVFSKRDER 57
F M + +I L A ++ + G + G + + G + +
Sbjct: 105 FASMMANVIVIALLAMAGIWLVRKFMNRRGAQQQPAYAGGQPSLNRDHGGYNQDAGAWRQ 164
Query: 58 GIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117
+ G V FD + FL A+ + + +
Sbjct: 165 AAPNDAFAGSGSTYAGEAQRVFGGAATAAAPAAAPMVPAGFDTEAFLRNAKVYFVRLQAA 224
Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
+ EG + I + + F + + V D +++ + +
Sbjct: 225 WDEGNLADIREFTTPEM---FAEVKIDLDGRGAGENQTDVVRLDAELLAVEDRGGEHFAS 281
Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+R ++ + ++W + + W+L +
Sbjct: 282 VRFH-----------GMIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQV 321
>gi|83718851|ref|YP_441111.1| Tim44-like domain-contain protein [Burkholderia thailandensis E264]
gi|83652676|gb|ABC36739.1| Tim44-like domain family [Burkholderia thailandensis E264]
Length = 340
Score = 90.0 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/234 (10%), Positives = 62/234 (26%), Gaps = 22/234 (9%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT-----GNEKPFSGFFSGKYVFSKRDER 57
F M + +I L A ++ + G + G + + G + +
Sbjct: 121 FASMMANVIVIALLAMAGIWLVRKFMNRRGAQQQPAYAGGQPSLNRDHGGYNQDAGAWRQ 180
Query: 58 GIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117
+ G V FD + FL A+ + + +
Sbjct: 181 AAPNDAFAGSGSTYAGEAQRVFGGAATAAAPAAAPMVPAGFDTEAFLRNAKVYFVRLQAA 240
Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
+ EG + I + + F + + V D +++ + +
Sbjct: 241 WDEGNLADIREFTTPEM---FAEVKIDLDGRGAGENQTDVVRLDAELLAVEDRGGEHFAS 297
Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+R ++ + ++W + + W+L +
Sbjct: 298 VRFH-----------GMIRETQGAAAEPFDEVWNLSK---SGSQGWLLAGIQQV 337
>gi|220905000|ref|YP_002480312.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219869299|gb|ACL49634.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 308
Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/225 (14%), Positives = 73/225 (32%), Gaps = 28/225 (12%)
Query: 11 FLILLFAFITFF---VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
I+L + F +F + R + S S + + +
Sbjct: 109 MDIILIGLLAFLGLKLFARFRN---------RQASATAGAHGQHSGGYSDRMQGMQRESA 159
Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
N + G + + + FD +FL A+ +Y + +S+ + + I
Sbjct: 160 GGNGWDVLRGDGQGAAAHMAAGPNIPMPEGFDVDEFLRGAKMAYTRLQNSWDKRDMDDIS 219
Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
+ S V ++ + + + S+ + + + +++ E N Y +
Sbjct: 220 QFTSSAV----QHAVREQMEADPSPSSTEILLVNAQLLGVENEGNEQYAQVFFDVLMRE- 274
Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
S D + V ++W F+R + +W L + E
Sbjct: 275 ---------SPDQQAPSTVREVWHFMRPV--QGGSWKLDGIQQVE 308
>gi|193620416|ref|XP_001947189.1| PREDICTED: mitochondrial import inner membrane translocase subunit
TIM44-like [Acyrthosiphon pisum]
Length = 409
Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 59/151 (39%), Gaps = 3/151 (1%)
Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
++ V+ ++ V DF +F+ + ++++ + ++ Y+ +
Sbjct: 250 NAEMSDVVTELCRVEPDFSLVNFIRQCETDIIPNVLEAIAREDLIILKDWCFEAPYRVLS 309
Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199
++ + ++ + ++ ++ + E+ + I Q I D + L+I D
Sbjct: 310 HPVTEHRQKGHQTYCKVLDVHNVDVVTGKLMEHGPVLIISFSAQQIMYIKDVNGLIIEGD 369
Query: 200 PEIFGKVIDIWTFVRNIPPSNP--NWVLIST 228
P +V+ W R++ NP W L+
Sbjct: 370 PHTVIRVMYTWAMCRDVNEVNPRAAWKLLDI 400
>gi|171321552|ref|ZP_02910488.1| import inner membrane translocase subunit Tim44 [Burkholderia
ambifaria MEX-5]
gi|171093167|gb|EDT38379.1| import inner membrane translocase subunit Tim44 [Burkholderia
ambifaria MEX-5]
Length = 344
Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/237 (13%), Positives = 67/237 (28%), Gaps = 29/237 (12%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F M + +I L A I ++ R + ++ E +S S
Sbjct: 124 FASMMANVIVIALLAMIGIWLV---RKFMNRRRSQEPAYSVGGSASSSGGYSQSPSFQQG 180
Query: 63 GKGKKKDNLDSINELFPIG---------TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
G S G + + V FD + FL A+ +
Sbjct: 181 STGNTYAGSGSSYANEAQGVFGGGAAAAGAAGAMAAAPLQVPAGFDTEAFLRSAKVYFVR 240
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
+ ++ +G + I + + F + S + + V D +++
Sbjct: 241 LQAAWDQGNLADIREFTTPEM---FAEIKIDLDSRGNDANQTDVVQLDAELVAIEDRGIE 297
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++R L+ S + ++W + + W+L +
Sbjct: 298 QSASVRFH-----------GLIRESANAPAAPLDEVWNLSK---SGSQGWLLAGIQQ 340
>gi|224085633|ref|XP_002307643.1| predicted protein [Populus trichocarpa]
gi|222857092|gb|EEE94639.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 20/166 (12%), Positives = 59/166 (35%), Gaps = 8/166 (4%)
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
+++ + +++I F DF+ E + + +++++ +G + ++K
Sbjct: 314 QDVSDSIFQESDAAASIKEIRRRDLSFSLMDFVAEVQEAIRPVLNAYMKGDIETLKKYCT 373
Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
S V +++ + ++ I D+++ + + I + Q + D+
Sbjct: 374 SEVINRREAEHKAFEAHGIFFDNKILHISDVEVREIKMMGTSPLIIVAFQTQQVHCIRDQ 433
Query: 192 DNLLISSDPEIFGKVIDIWTFVRNI-------PPSNPNWVLISTKL 230
+ + + V W R + P W L+ +
Sbjct: 434 NGAITEGGQDTIHTVYYAWAM-RQVDPEELGGGAIYPIWKLMEMQQ 478
>gi|222055934|ref|YP_002538296.1| import inner membrane translocase subunit Tim44 [Geobacter sp.
FRC-32]
gi|221565223|gb|ACM21195.1| import inner membrane translocase subunit Tim44 [Geobacter sp.
FRC-32]
Length = 315
Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/191 (15%), Positives = 66/191 (34%), Gaps = 3/191 (1%)
Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100
F K S G G N P+ ++ + +I S+ FD
Sbjct: 126 IYRFVKKKREASLATPYGQTGYQAGTVTSFPSGYNSSLPVADTVDSGIANIRSMDASFDE 185
Query: 101 KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160
+ F + +++ I ++ + + L+ + + +S + + + + +
Sbjct: 186 QRFKDSVMDTFFRIQGAWMNRDLAPVSILLTEEMKNILQEDVSRLLRDRQVNRLENIAVR 245
Query: 161 DMKIINASIEENTVYITIRIVGQFISASYD-KDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
++I A E +IT I + + D ++S + K + WTF R + +
Sbjct: 246 SVEIAEAWQESGQDFITASIYANLLDYTTDDATGAVVSGNRTEPVKFEEYWTFTRPVGAN 305
Query: 220 NPNWVLISTKL 230
W L +
Sbjct: 306 --AWRLSAIDQ 314
>gi|291241124|ref|XP_002740467.1| PREDICTED: mitochondrial import inner membrane translocase subunit
TIM44-like [Saccoglossus kowalevskii]
Length = 457
Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 24/183 (13%), Positives = 64/183 (34%), Gaps = 5/183 (2%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
+ + D + + T +++V+ +I+ + F FL +
Sbjct: 272 ESDNAVIRASRVVTDKVSQLLGGVFTKTEMSEVLTEIIKIDPHFSKDKFLRQCESEIIPN 331
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I+++ G + ++ + + + S ++ ID ++++ + E
Sbjct: 332 ILEAMIRGDLDVLKDWCYEAPFNAIAVPVRQAIALGYKFDSKVLDIDYLELVMGKMMEQG 391
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIST--K 229
+ I Q I + + ++ D + +V +W R+ NP W L+ +
Sbjct: 392 PVLIISFQTQQIQVVRNAKHEIVEGDEDKVVRVQYVWVLCRDQEELNPDAAWKLLDLSAQ 451
Query: 230 LGE 232
+
Sbjct: 452 TAQ 454
>gi|332264171|ref|XP_003281120.1| PREDICTED: mitochondrial import inner membrane translocase subunit
TIM44 [Nomascus leucogenys]
Length = 455
Score = 89.2 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 31/193 (16%), Positives = 65/193 (33%), Gaps = 5/193 (2%)
Query: 43 GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKD 102
F + + I + D + E T +++V+ +I+ V FD
Sbjct: 256 NRFFEMKMKYDESDNAFIRASRALTDKVTDLLGEGSVSKTEMSEVLTEILRVDPAFDKDR 315
Query: 103 FLNEARNSYEAIVDSFFE---GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159
FL + N V G + + + Y + K+ S ++ I
Sbjct: 316 FLKQCENDIIPNVLEVGAAPPGPLPGSRSWLHQQTYSQLAHPIQQAKALGLQFHSRILDI 375
Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
D++ + + E + I Q + + ++ DP+ +++ +W R+
Sbjct: 376 DNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQDEL 435
Query: 220 NP--NWVLISTKL 230
NP W L+
Sbjct: 436 NPYAAWRLLDISA 448
>gi|94309317|ref|YP_582527.1| import inner membrane translocase, subunit Tim44 [Cupriavidus
metallidurans CH34]
gi|93353169|gb|ABF07258.1| import inner membrane translocase, subunit Tim44 [Cupriavidus
metallidurans CH34]
Length = 329
Score = 89.2 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/226 (14%), Positives = 63/226 (27%), Gaps = 21/226 (9%)
Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
S L + A I ++ + R G ++P G TL +
Sbjct: 120 SNVILFGVIALIAMWLIRKFR---GGSARTQQPSYAGMGGNGSNYGGPSHAEPTLRTAEP 176
Query: 68 KDNLDSINELFPIGTRLNKVMRDIVS---VYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
N + + G + V DFD + FL A+ Y + ++ G
Sbjct: 177 VGNGGAASNPVMGGAAAAATAAAVQQPWGVPADFDTESFLRNAKVHYVRLQAAWDAGNQD 236
Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
I + + F + V + V D +++ ++R
Sbjct: 237 DIREFTTPEM---FAEIKMDLSERGSEVNKTDVVTLDAQLLGIESTPAQHIASVRF---- 289
Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++ E ++W + N W+L +
Sbjct: 290 -------SGMIREKAGEPAQPFGEVWNLAK-ATSGNGGWLLAGIQQ 327
>gi|158425088|ref|YP_001526380.1| hypothetical protein AZC_3464 [Azorhizobium caulinodans ORS 571]
gi|158331977|dbj|BAF89462.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
Length = 335
Score = 89.2 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/214 (12%), Positives = 55/214 (25%), Gaps = 4/214 (1%)
Query: 17 AFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINE 76
A I V L LR ++ + S LG
Sbjct: 125 ALIAGVVMLALRFFANRRQPAPAGAGYGMARDNGASASGRGPTGPLGGLGGLGAGLGGLG 184
Query: 77 LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136
+ + I ++ + + +LV +
Sbjct: 185 GGQTQPQPQPQAAPSGPKDELGLKGADFDAFEKLLSDIQAAYSREDRNKLAELVTPEILG 244
Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK-DNLL 195
F + L + + V + + A E Y T+ + + D+ L
Sbjct: 245 YFEEELRANAERGVRNQVNDVKLLQGDLSEAWREGQFEYATVALRYEARDTMRDRTTGAL 304
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
+ + + ++WTF+R W L + +
Sbjct: 305 AAGSTDAPSQSTEVWTFIRLRGQP---WKLSAIQ 335
>gi|332701192|ref|ZP_08421280.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
africanus str. Walvis Bay]
gi|332551341|gb|EGJ48385.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
africanus str. Walvis Bay]
Length = 313
Score = 89.2 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 34/227 (14%), Positives = 71/227 (31%), Gaps = 25/227 (11%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
MD IL+FA + F R ++ +E +S ++ E + G
Sbjct: 111 MDFLLIGILIFAGVMVF-----RMFAARRQQSE------YSYAGAAQRQAEAPVDQGSWG 159
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
+ + S F+ +FL A+ Y + S+ +
Sbjct: 160 GSQWDKLRSAPASGQANGQADSQARPGSNVPGFNEDEFLRGAKMVYTRLQASWDARDLED 219
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
I + VY + + + ++ + + + +++ + V T+
Sbjct: 220 IREFTSPEVYAEIARQ----AAQDPTPSTTEILLVNARLLEVKQQSAQVLATVYFDVLMR 275
Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
DK G+V ++W F+R +W L + E
Sbjct: 276 E---DKA-------QNAPGQVREVWHFLRENDDPKSSWKLEGIQQLE 312
>gi|221130340|ref|XP_002162926.1| PREDICTED: similar to translocase of inner mitochondrial membrane
44 [Hydra magnipapillata]
Length = 325
Score = 88.8 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 22/182 (12%), Positives = 61/182 (33%), Gaps = 5/182 (2%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
+ +I + L + + + +I + F+ F+ E
Sbjct: 140 ESDNVIIRATRVVTNKLSDVFSDVFSQSEQAATIAEITKIDPSFNKDKFIKECEFEIIPT 199
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
+++++ G + ++ V+ + + + +S ++ I D+ ++ A I E
Sbjct: 200 VLEAYLRGDIECLQDWCHEGVFSILSTQIKNNSAQGLVNESRILDIRDVDLVMAKIMEQG 259
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN--PNWVLIS--TK 229
+ + Q +S D +I + V +W R+ + W ++ +
Sbjct: 260 PVLILTFQAQQVSIMKDSKGKIIEGGEDNIESVNYVWAMCRDQSIYDHHSAWRVLELGIQ 319
Query: 230 LG 231
Sbjct: 320 QA 321
>gi|238028618|ref|YP_002912849.1| hypothetical protein bglu_1g30820 [Burkholderia glumae BGR1]
gi|237877812|gb|ACR30145.1| Hypothetical protein bglu_1g30820 [Burkholderia glumae BGR1]
Length = 348
Score = 88.8 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/241 (11%), Positives = 68/241 (28%), Gaps = 31/241 (12%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKT-------------GNEKPFSGFFSGKY 49
F M + +I L AF ++ +L G++ G + SG ++
Sbjct: 122 FAGMMANLIVIALLAFAGIWLVRKLMN-RGRRQEPAYAGSGASMNRGYDGAASGGYAAGN 180
Query: 50 VFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN 109
+ + + + + V FD + F+ A+
Sbjct: 181 ATYSSAPQPASSSNYANEAARVFGGGAAAGAVNDAVGSASAVPQVPAGFDTEAFVRNAKV 240
Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
+ + ++ +G + I + + F + S + V D ++
Sbjct: 241 YFVRLQAAWDQGNLADIREFTTPEM---FAEVKIDLDSRGAGKNQTDVVQIDADLLGVEQ 297
Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
+ ++R ++ + ++W + N W+L +
Sbjct: 298 RGSLSEASVRFH-----------GMIRENPGAPAEPFEEVWNLTK---SGNEGWLLAGIQ 343
Query: 230 L 230
Sbjct: 344 Q 344
>gi|134096015|ref|YP_001101090.1| hypothetical protein HEAR2855 [Herminiimonas arsenicoxydans]
gi|133739918|emb|CAL62969.1| conserved hypothetical protein; putative exported protein
[Herminiimonas arsenicoxydans]
Length = 315
Score = 88.8 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/232 (12%), Positives = 67/232 (28%), Gaps = 23/232 (9%)
Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNE-----KPFSGFFSGKYVFSKRDERG 58
M S ++ LFAF F++ R + K G + F +
Sbjct: 101 ASMISTMLMVGLFAFAAMFIY---RMIKAKSAGAQAGNQRNGLQPSFPNNFSEKSSTPEI 157
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ + + + G+ + + DFD + F+ A+ + + ++
Sbjct: 158 GSRIEQPYGQPSALQSAAPLASGSAFGAGIDAANDLPADFDVESFVRNAKTYFIRLQAAW 217
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
+ V+ I + ++ + L R + + V + + +I
Sbjct: 218 DKADVNDIREFTTPEMFAELKAQLLER---GASENHTDVISLEGIFYGVETVGDDYIASI 274
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ L+ + W + + + WVL +
Sbjct: 275 KF-----------TGLINEGAGAPTEPFSEAWNLSKPV-HGDGGWVLAGIQQ 314
>gi|225848621|ref|YP_002728784.1| hypothetical protein SULAZ_0804 [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225643113|gb|ACN98163.1| conserved hypothetical protein [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 293
Score = 88.4 bits (217), Expect = 7e-16, Method: Composition-based stats.
Identities = 35/226 (15%), Positives = 77/226 (34%), Gaps = 10/226 (4%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
S F L+ I + L G G + + +
Sbjct: 76 SSPVFKWLIGGMIFGALLSLLMG-----HGFQFGM-PGLLEILLIIGIVYLIFKIFSRKS 129
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+++ + + + + + +S + + + LN A+N++ I ++ EG + ++
Sbjct: 130 QQEPVYATPTSSNVPNQPDYYSDSTLSTASYINEELILNLAKNAFIDIQKAWSEGNLSSV 189
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ R+Y N L KS V I + +I++ E + + + I Q
Sbjct: 190 RNFLTDRMYLYLNSQLQDLKSKGLRNIIEDVKILNAEIVHVEEEGDNKVVIVEIEAQAKD 249
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ D + ++ D + + W FV NW L + +
Sbjct: 250 YTVDSNGNVVEGDKDNPVVFKEYWAFV----GKALNWKLDDIRQVQ 291
>gi|78067527|ref|YP_370296.1| putative transporter [Burkholderia sp. 383]
gi|77968272|gb|ABB09652.1| putative transporter [Burkholderia sp. 383]
Length = 344
Score = 88.4 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 30/237 (12%), Positives = 65/237 (27%), Gaps = 29/237 (12%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F M + +I L A + ++ R + ++ E +S S
Sbjct: 124 FASMMANVIVIALLAAVGIWLI---RKFMNRRRPQEPAYSVGGSASSSGGYSQSPSFQQG 180
Query: 63 GKGKKKDNLDSINELFPIG---------TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
G G S G + V FD + FL ++ +
Sbjct: 181 GTGSNYAGSGSSYANEAQGVFGGGAAATGAAAAAAAAPLQVPAGFDTEAFLRSSKVYFVR 240
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
+ ++ +G + I + + F + S + V D +++
Sbjct: 241 LQAAWDQGNLADIREFTTPEM---FAEIKIDLDSRGNESNQTDVVQLDAELVAIEDRGIE 297
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++R L+ S ++W + + W+L +
Sbjct: 298 QSASVRFH-----------GLIRESANASAAPFDEVWNLSK---SGSQGWLLAGIQQ 340
>gi|148224361|ref|NP_001087692.1| translocase of inner mitochondrial membrane 44 [Xenopus laevis]
gi|51703695|gb|AAH81090.1| MGC82677 protein [Xenopus laevis]
Length = 451
Score = 88.1 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 64/179 (35%), Gaps = 3/179 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ D + + T +++V+ +I+ V +FD FL
Sbjct: 266 ESDNAFVRASRTITDKVSDLIGGLFSKTEMSEVLTEILKVDPNFDKDKFLKLCERDIIPN 325
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I+++ G + ++ Y + KS S ++ ID++ + + E
Sbjct: 326 ILEAMIRGDLDVLKDWCYEATYSQLAHPIQQAKSMGLQFNSRILDIDNIDLAMGKMMEQG 385
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
+ I Q + A ++ ++ D + +++ +W R+ NP W L+
Sbjct: 386 PVLIITFQAQLVMAITNQRGDIVEGDQDKVLRMLYVWALCRDQDELNPYAAWRLLDISS 444
>gi|187608373|ref|NP_001120395.1| translocase of inner mitochondrial membrane 44 [Xenopus (Silurana)
tropicalis]
gi|170284954|gb|AAI61105.1| LOC100145471 protein [Xenopus (Silurana) tropicalis]
Length = 441
Score = 88.1 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 63/179 (35%), Gaps = 3/179 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ D + + T +++V+ +I+ V +FD FL
Sbjct: 256 ESDNAFVRASRTITDKVSDLIGGLFSKTEMSEVLTEILKVDPNFDKDKFLKLCERDIIPN 315
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I+++ G + ++ Y + K+ S ++ ID++ + + E
Sbjct: 316 ILEAMIRGDLDVLKDWCYEATYSQLAHPIQQAKAMGLQFNSKILDIDNIDLAMGKMMEQG 375
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
+ I Q + ++ ++ D + +++ +W R+ NP W L+
Sbjct: 376 PVLIITFQAQLVMVITNQKGDVVEGDRDKVLRMLYVWALCRDQDELNPYAAWRLLDISS 434
>gi|218460136|ref|ZP_03500227.1| hypothetical protein RetlK5_11796 [Rhizobium etli Kim 5]
Length = 121
Score = 88.1 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 6/121 (4%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG------I 59
M S DF+ L F +F QLR VLG++TGNEKP ++ +
Sbjct: 1 MSSNDFITLFFLVAAVLIFFQLRSVLGRRTGNEKPPRDLYTPRDAAPAEAADAGKVVTLP 60
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
G+ +D +I+ + GT LN+ +R + F+PK+FLN AR +YE IV ++
Sbjct: 61 RRDATGEDEDRFAAIDAVAAPGTPLNESLRALNKADPSFNPKEFLNGARMAYEMIVMAYA 120
Query: 120 E 120
+
Sbjct: 121 D 121
>gi|218887945|ref|YP_002437266.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
vulgaris str. 'Miyazaki F']
gi|218758899|gb|ACL09798.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
vulgaris str. 'Miyazaki F']
Length = 308
Score = 88.1 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 30/223 (13%), Positives = 67/223 (30%), Gaps = 28/223 (12%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
+LL A + F+ L+ ++ G S + G +
Sbjct: 113 MMDMLLLALVA---FMALKFFAARR--------GSAPAPASASGQPGGMRREADYGAQSG 161
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+ + L + FD ++FL A+ +Y + S+ + I +
Sbjct: 162 SSAGWDALRNAPAAAADAQPASPGIPEGFDTEEFLRGAKLAYNRLQTSWDRRDLDDIAQF 221
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+ +D + + V + +++ + E++ T+
Sbjct: 222 TTPEILKDITQQAQE----DPGPSRTEVLYCNASVLSVTEEKDRSVATVFFDVLMRE--- 274
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ + +V ++W FVR N W L + E
Sbjct: 275 -------DAQADAPSQVREVWHFVR---TGNEMWRLDGIQQVE 307
>gi|47214080|emb|CAF95337.1| unnamed protein product [Tetraodon nigroviridis]
Length = 223
Score = 88.1 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 2/161 (1%)
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
K+ L E +R I ++F KDF +A+ + + +
Sbjct: 20 SKEGLKQRTEQIRQSAASQLAIRKIKDHDSEFSTKDFAEQAQEIFIEAHNCLTNFNKEKL 79
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQF 184
L+ R Y + + + V+S + + S +T+R+ +
Sbjct: 80 HSLLTERCYPEMTRGNRYKTIRWRFVESLELPKVVHARCPDMVSKGNLYGQVTVRMHSRQ 139
Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
A YD+ L+ + E V++ R++ W L
Sbjct: 140 TLAIYDRFGRLMLGNEEQPKDVLEYLVLERHLVNPYGRWRL 180
>gi|289741253|gb|ADD19374.1| mitochondrial import inner membrane translocase subunit TIM44
[Glossina morsitans morsitans]
Length = 421
Score = 88.1 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 68/178 (38%), Gaps = 4/178 (2%)
Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYE 112
+ + D + + T L++ M ++ + +FD K FL + +
Sbjct: 234 EESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELCKIDPNFDQKQFLRDCEVDIIP 293
Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
I+++ G + ++ Y ++ + + S ++ I+++ ++ + E
Sbjct: 294 NILEATVRGDLEILKDWCFESTYNLIATPINQAIKSGLCLDSKILDIENIDLVMGKVMEQ 353
Query: 173 TVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ I Q I D+ N ++ DPE +V +W R+ NP W L+
Sbjct: 354 GPVLIITFQAQQIMCLKDRATNKIVEGDPEKVMRVNHVWVLCRDPNELNPKAAWRLLE 411
>gi|114328920|ref|YP_746077.1| transporter [Granulibacter bethesdensis CGDNIH1]
gi|114317094|gb|ABI63154.1| transporter [Granulibacter bethesdensis CGDNIH1]
Length = 326
Score = 88.1 bits (216), Expect = 9e-16, Method: Composition-based stats.
Identities = 30/221 (13%), Positives = 65/221 (29%), Gaps = 24/221 (10%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
I L + F++ + G G+ + D
Sbjct: 129 LQIFLIVMVVRFLWRRF-----------------AGGNAPAMAPAGAGMTNPFTTNQTDR 171
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
G + + D + F + + + ++ + + + +
Sbjct: 172 GPIGGGQMGGGPMGGRQSSVQPIQLSQGDYQRF----ESLLKEVQAAWTDRNLQQLGSIS 227
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
+ FN+ L+ S + + V + + A E Y T+ ++ I A+YD
Sbjct: 228 TPEMVGYFNEQLTALASRGLHNTVTNVTLQKGDLSEAWREGTLEYATVAMLFSMIDATYD 287
Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
++ D + WTFVR W+L + +
Sbjct: 288 SSGRVVEGDASQLQTATEFWTFVR---SPGGPWILSAIQQA 325
>gi|58040295|ref|YP_192259.1| putative transmembrane protein [Gluconobacter oxydans 621H]
gi|58002709|gb|AAW61603.1| Putative transmembrane protein [Gluconobacter oxydans 621H]
Length = 316
Score = 88.1 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 49/167 (29%), Gaps = 6/167 (3%)
Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
G + T T+ D F + I ++ +
Sbjct: 155 GNRGQRSPMGMPSSAGATPFGNAGGSTPVTLTNDDYLSF----QRLLLDIQAAWSAQNMR 210
Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
A+ + + FN LS S S V + A E N Y T+ +
Sbjct: 211 ALASMATPEMTGYFNAQLSDLASRGARNIVSNVQFQRGDLSEAWREGNLTYATVAMRYSM 270
Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ D +I V ++WTFVR NW+L + +
Sbjct: 271 TDVTTDSMGNVIDGSSTEPVTVTELWTFVR--ADGRGNWILSAIQQA 315
>gi|307726779|ref|YP_003909992.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
CCGE1003]
gi|307587304|gb|ADN60701.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
CCGE1003]
Length = 322
Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 20/229 (8%), Positives = 67/229 (29%), Gaps = 22/229 (9%)
Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
+M S ++ + + + + ++ +P + G S+ +
Sbjct: 115 AQMLSNML-LIGLVVVAGVMLFRF--IANRR----RPDLAYGHGAASRSQSNGMPFANQN 167
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
+ D+ ++ + + D + + A++ + + ++ +
Sbjct: 168 GQARPDSSFFGSQRTAANQTAAAGVFNAPVQPLGLDQAELVASAKSMFMRLQGAWDRNEQ 227
Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
+ +L + F + + V D +++ + ++++R
Sbjct: 228 GDLFELTTPEM---FAQLKRDLEGRGNQPNRTEVPQLDAEVLGVESTADETFVSVRFY-- 282
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ D ++W VR+ N W L + +
Sbjct: 283 ---------GQMREDDAPTAQPFQEVWNIVRSAHSGN-TWRLAGIQQLD 321
>gi|89092751|ref|ZP_01165704.1| hypothetical protein MED92_15633 [Oceanospirillum sp. MED92]
gi|89083263|gb|EAR62482.1| hypothetical protein MED92_15633 [Oceanospirillum sp. MED92]
Length = 294
Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/223 (9%), Positives = 69/223 (30%), Gaps = 22/223 (9%)
Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
+ I +FL + ++ + ++P + K ++
Sbjct: 93 FEGIQFMDLLLIAGVIFLIFK-IMSMRRQAQQPTYANNGPQQYEIKPHAEQQQREAAPEQ 151
Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
N + + + + F+ + FL A++ + + ++ I
Sbjct: 152 DSNFKPMPSF-----NSGWGNSEEFELPSWFNRESFLEGAKSHFVTLQKAWDASNWDEIR 206
Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
++Q + ++ +++ V ++ N +++ V ++I
Sbjct: 207 TYTSDELFQALQQERAKYPAD----QTTEVVSVMAEVANFIDQKSEVIVSINFY------ 256
Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
L + E + + W R++ N +W ++ +
Sbjct: 257 -----GWLKENSEET-TEFNETWHLSRDMSVENADWFIVGIEQ 293
>gi|209542494|ref|YP_002274723.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530171|gb|ACI50108.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter
diazotrophicus PAl 5]
Length = 320
Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 6/154 (3%)
Query: 78 FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD 137
+ T D + F + I ++ + + A++ + +
Sbjct: 172 PMPAAPYGQGPSADQVTITPDDYRAF----QRLLLDIQAAWSQRNLPALQHMATPEMVGY 227
Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197
FN LS S S V + + A E Y T+ + + + D +I
Sbjct: 228 FNAQLSDLASRGARNVVSDVRFEQGDLSEAWSENGFDYATVAMRYSMVDITTDMTGRVID 287
Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
V ++WTFVR W+L + + G
Sbjct: 288 GSSTERVMVTELWTFVRP--TRGGAWLLSAIQQG 319
>gi|152997235|ref|YP_001342070.1| import inner membrane translocase subunit Tim44 [Marinomonas sp.
MWYL1]
gi|150838159|gb|ABR72135.1| import inner membrane translocase subunit Tim44 [Marinomonas sp.
MWYL1]
Length = 289
Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 74/228 (32%), Gaps = 34/228 (14%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F + G I+LFA I F+ + ++ + + +G + R +
Sbjct: 94 FDGISFG--DIMLFALI-GFLVYKFFIAPKRRAAAAQAQASGANGMFREMPNSTRDNVQP 150
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
P+ + + + F+ + F+ EA+N Y + ++ +
Sbjct: 151 ---------------SPMSGISGFGAQPEIKLPPGFNEQAFVAEAKNHYITLQKAWDDNN 195
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
I V +Y R ++ N + V +++ +T I+++
Sbjct: 196 FDEILDYVSPELYNLLVA---ERATHGDNKPRTEVISLMAELVRGEYIGSTASISLQF-- 250
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ D +IW +N+ +N NW ++ +
Sbjct: 251 ---------SGWIKEGDQTS--DTNEIWHLEKNMSDANGNWTIVGIQQ 287
>gi|170584097|ref|XP_001896855.1| Tim44-like domain containing protein [Brugia malayi]
gi|158595793|gb|EDP34297.1| Tim44-like domain containing protein [Brugia malayi]
Length = 773
Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 71/165 (43%), Gaps = 4/165 (2%)
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEAIVDSFFEGKVHA 125
+ + ++ + + +++V+ +I V +F+ ++L + ++++F G +
Sbjct: 599 DESDNLALRLVRGGHSEISEVLSEIQKVDPNFEKNEWLRFCEKEIIPNVLEAFIRGDLKI 658
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEK-NVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
++ R Y + +++ K S ++ I+ ++++ + E+ I I
Sbjct: 659 LKDWCYERAYNILSATVNEYKKINFNTTDSRIIDINRVEMVTGKMMEHGPVIIITFQAYM 718
Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
++ + + ++ DP +V +W R++ NP W ++
Sbjct: 719 VNIVRNMEGKVVEGDPNSPVRVHHVWVMCRDMEEYNPRVAWKVLE 763
>gi|17508985|ref|NP_491780.1| hypothetical protein T09B4.9 [Caenorhabditis elegans]
gi|6016367|sp|O02161|TIM44_CAEEL RecName: Full=Probable mitochondrial import inner membrane
translocase subunit tim-44; Flags: Precursor
gi|2039379|gb|AAB53011.1| Hypothetical protein T09B4.9 [Caenorhabditis elegans]
Length = 425
Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 66/160 (41%), Gaps = 4/160 (2%)
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLV 130
+ I +F +++V+ +I + +FD +++L I+++F + ++
Sbjct: 256 EKIGSVFSGQNEVSEVLTEIHKIDANFDKQEWLRFCETKIIPNILEAFIRFDLEVLQSWC 315
Query: 131 DSRVYQDFNDSLSTRKSNEK-NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
R Y + + + S ++ I+ +++ + E + I I+ +
Sbjct: 316 HERAYTQLSTVVKEYQKMHFSTKDSRIIDINKVEMATGKMMEQGPVLIISFQVYMINVTK 375
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ D ++ DP+ ++ IW R++ NP W L+
Sbjct: 376 NADGKVVEGDPDNPKRINHIWVLCRDVEEYNPALAWKLLE 415
>gi|308499393|ref|XP_003111882.1| hypothetical protein CRE_29458 [Caenorhabditis remanei]
gi|308268363|gb|EFP12316.1| hypothetical protein CRE_29458 [Caenorhabditis remanei]
Length = 425
Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/175 (13%), Positives = 69/175 (39%), Gaps = 4/175 (2%)
Query: 57 RGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIV 115
+ + + I +F +++V+ +I + +FD +++L I+
Sbjct: 241 EESDNIAVRMMRGVTEKIGSVFSGQNEVSEVLTEIHKIDANFDKQEWLRFCETKIIPNIL 300
Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS-NEKNVKSSLVGIDDMKIINASIEENTV 174
++F + ++ R + + + + + S ++ I+ +++ + E
Sbjct: 301 EAFIRFDIEVLQSWCHERAFTQLSTVVKEYQKMHWSTKDSRIIDINKVEMATGKMMEQGP 360
Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ I I+ + + + ++ DP+ ++ IW R++ NP W L+
Sbjct: 361 VLIISFQVYMINVTKNAEGKVVEGDPDNPKRINHIWVLCRDVEEYNPATAWKLLE 415
>gi|157803805|ref|YP_001492354.1| hypothetical protein A1E_03170 [Rickettsia canadensis str. McKiel]
gi|157785068|gb|ABV73569.1| hypothetical protein A1E_03170 [Rickettsia canadensis str. McKiel]
Length = 211
Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 81/229 (35%), Gaps = 25/229 (10%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M +L+FA I FF+ +L LG E+ + G+ V + +
Sbjct: 1 MSPQIIELLIFALIAFFIINKLITTLGSTAEEEQTKQKSYFGEPVIKDVTYSAVKSNKAE 60
Query: 66 KKKDNLDSINE-----LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
K ++ I + T + M + FDP F+N A+ +++ I+++ ++
Sbjct: 61 KNLPTVEDIKAFQDIIVEQNITAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
+ +LVD R ++F + K + N ++I +
Sbjct: 121 KDTQELSELVDKRYLEEFEKITPSYG------DFFDSSALSAKYSEIYLFGNNIFIKLLF 174
Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
G+ + + + + WTF RN +W L + +
Sbjct: 175 QGKNVV--------------DKIEDLKEEWTFTRNANTKEVDWFLSNIE 209
>gi|77461866|ref|YP_351373.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
fluorescens Pf0-1]
gi|77385869|gb|ABA77382.1| putative exported protein [Pseudomonas fluorescens Pf0-1]
Length = 292
Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/228 (13%), Positives = 76/228 (33%), Gaps = 34/228 (14%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F M F IL+ A I F +F R + ++ ++ F+ + + +
Sbjct: 97 FEGMQF--FDILIMAVIAFVIF---RFIAARRRKQQEQFAPAGAPMQREVFEQKPAAM-- 149
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
G+ R +++ F+ + FL AR+ ++A+ + +
Sbjct: 150 -------------GSIFGGSAAPAAARPVINAPAWFNEQRFLEAARSHFQALQQHWDANE 196
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
+ I + V ++ F R +S+ + +++ + T+ G
Sbjct: 197 MDKIAEFVTPQM---FEFLKRERAELGDAFQSTYIDNLQVQLDGVDDRADKTIATLTFNG 253
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++ +D+ + + W R + P W++ +
Sbjct: 254 VSKTSRFDQQGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 290
>gi|162147875|ref|YP_001602336.1| hypothetical protein GDI_2091 [Gluconacetobacter diazotrophicus PAl
5]
gi|161786452|emb|CAP56034.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 324
Score = 87.3 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 6/154 (3%)
Query: 78 FPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD 137
+ T D + F + I ++ + + A++ + +
Sbjct: 176 PMPAAPYGQGPSADQVTITPDDYRAF----QRLLLDIQAAWSQRNLPALQHMATPEMVGY 231
Query: 138 FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197
FN LS S S V + + A E Y T+ + + + D +I
Sbjct: 232 FNAQLSDLASRGARNVVSDVRFEQGDLSEAWSENGFDYATVAMRYSMVDITTDMTGRVID 291
Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
V ++WTFVR W+L + + G
Sbjct: 292 GSSTERVMVTELWTFVRP--TRGGAWLLSAIQQG 323
>gi|303248706|ref|ZP_07334959.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
fructosovorans JJ]
gi|302489871|gb|EFL49799.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
fructosovorans JJ]
Length = 303
Score = 87.3 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/220 (15%), Positives = 65/220 (29%), Gaps = 28/220 (12%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
+L I +FL R LG++ + ++
Sbjct: 111 LLDLILIGGGLFLLFR-FLGRR-------------RMASQSGPSMARTYEASPMREAAGS 156
Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
L + +V FD +DFL+ A+ + + S+ V I
Sbjct: 157 GWANLGAASSGPQAQAASGPNVPPGFDVEDFLSGAKTLFGRLQRSWSARDVSDIATFATP 216
Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
F + + + + + N + + V + D K++ T +
Sbjct: 217 A----FMEDVRRQAAEDPNPEPTDVLLVDAKLLEVRKMGETTIASAYFDTLMREDPK--- 269
Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ PE V +IW F R NW L + + E
Sbjct: 270 ----AGQPEQ---VREIWHFARRDDVPGDNWRLDAIQQLE 302
>gi|256083399|ref|XP_002577932.1| mitochondrial import inner membrane translocase subunit tim44
[Schistosoma mansoni]
gi|238663274|emb|CAZ34170.1| mitochondrial import inner membrane translocase subunit tim44,
putative [Schistosoma mansoni]
Length = 407
Score = 87.3 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 61/164 (37%), Gaps = 3/164 (1%)
Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAI 126
D L ++ L +V+ +I+ + F+ + F+ R ++++ G + +
Sbjct: 235 TDRLSNLFGGLKSTNDLQQVLDEIIKMDPSFNLESFIRYCRFVVIPNVLEAIVRGDLRIL 294
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
Y L K +S ++ + ++ + + E + I Q I+
Sbjct: 295 HDWCHEVPYNVLATPLKQMKELGYISESRILDVHNVDVQMGKMMEQGPVLIITFQAQQIN 354
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIST 228
DK+ L DP +V ++W R+ NP W ++
Sbjct: 355 CIRDKNGNLHEGDPNKVLRVTNVWALCRDQSEMNPLAAWRVLDI 398
>gi|94986557|ref|YP_594490.1| hypothetical protein LI0112 [Lawsonia intracellularis PHE/MN1-00]
gi|94730806|emb|CAJ54168.1| uncharacterized protein conserved in bacteria [Lawsonia
intracellularis PHE/MN1-00]
Length = 313
Score = 87.3 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/221 (13%), Positives = 74/221 (33%), Gaps = 19/221 (8%)
Query: 12 LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71
++L A + ++ +L K T NE + I
Sbjct: 110 DLILIAGL-VYLAYRLF-FKRKITSNEASVTNSLYA--TQQPLTSEMPIPRSTTLSGTGW 165
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
+S+ + ++ DF+ ++FL A+ +Y + ++ + I++
Sbjct: 166 ESLKSQHTTYSADVSNQAITTNIPIDFNEEEFLKGAKAAYVRLNAAWDNRDLEDIQQFTT 225
Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
+ ++ N +++ + + + +++ E+ +++ K
Sbjct: 226 PGFLNELQQQITE----NPNPETTEIMLVNASVVDVKKIEDEELVSVYFNVLL------K 275
Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+N E +V +IW FVR +W L + E
Sbjct: 276 ENQ----SQESPIEVREIWHFVRP-ASGEGSWKLDGIQQVE 311
>gi|67459060|ref|YP_246684.1| hypothetical protein RF_0668 [Rickettsia felis URRWXCal2]
gi|67004593|gb|AAY61519.1| unknown [Rickettsia felis URRWXCal2]
Length = 211
Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/229 (16%), Positives = 82/229 (35%), Gaps = 25/229 (10%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M +L+FA I F++ +L LG + E+ + G+ V + + +
Sbjct: 1 MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSTVKSNKEE 60
Query: 66 KKKDNLDSINE-----LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
K I + T + M + FDP F+N A+ +++ I+++ ++
Sbjct: 61 KNIPTAQDIKAFKDIIVEHNITAVVDGMEQVHKHLYSFDPIKFINNAKTAFQMIIEAAYK 120
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
+ +L+D R ++F + + K + N ++I +
Sbjct: 121 KDAKELSELIDKRYLEEFEKITPSYG------DFFDLSALSAKYSEIYMFGNNIFIKLLF 174
Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
G+ + + + + WTF RN +W L + +
Sbjct: 175 QGKNVV--------------DKIEDLKEEWTFTRNANTKEVDWFLSNIE 209
>gi|239947276|ref|ZP_04699029.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239921552|gb|EER21576.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 211
Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/229 (17%), Positives = 82/229 (35%), Gaps = 25/229 (10%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M +L+FA I FF+ +L LG + E+ + G+ V + + +
Sbjct: 1 MSPQIIELLIFAVIAFFIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSTVKSNKEE 60
Query: 66 KKKDNLDSINE-----LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
K I + T + M + + FDP F+N A+ +++ I+++ ++
Sbjct: 61 KNIPTAQDIKAFKDIIVEHNITAVVDGMEQVHNRLYSFDPVKFINNAKTAFQMIIEAAYK 120
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
+ +L+D R ++F + K + N ++I +
Sbjct: 121 KDTQELSELIDKRYLEEFEKITPSYG------DFFDSSALSAKYSEIYMFGNNIFIKLLF 174
Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
G+ + + + + WTF RN +W L + +
Sbjct: 175 QGKNVV--------------DKIEDLKEEWTFTRNANAKEVDWFLSNIE 209
>gi|268567730|ref|XP_002640066.1| Hypothetical protein CBG12550 [Caenorhabditis briggsae]
gi|187029170|emb|CAP31512.1| hypothetical protein CBG_12550 [Caenorhabditis briggsae AF16]
Length = 425
Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/175 (13%), Positives = 69/175 (39%), Gaps = 4/175 (2%)
Query: 57 RGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIV 115
+ + + I +F +++V+ +I + +FD +++L I+
Sbjct: 241 EESDNIAVRMMRGVTERIGSVFSGQNEVSEVLTEIHKIDANFDKQEWLKFCETKIIPNIL 300
Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS-NEKNVKSSLVGIDDMKIINASIEENTV 174
++F + ++ R + + + + + S ++ I+ +++ + E
Sbjct: 301 EAFIRFDLEVLQSWCHERAFTQLSTVVKEYQKMHWSTKDSRIIDINKVEMATGKMMEQGP 360
Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ I I+ + + + ++ DP+ ++ IW R++ NP W L+
Sbjct: 361 VLIISFQVYMINVTKNAEGKVVEGDPDNPKRINHIWVLCRDVEEYNPAIAWKLLE 415
>gi|77359903|ref|YP_339478.1| hypothetical protein PSHAa0957 [Pseudoalteromonas haloplanktis
TAC125]
gi|76874814|emb|CAI86035.1| conserved protein of unknown function; putative membrane protein
[Pseudoalteromonas haloplanktis TAC125]
Length = 283
Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/223 (11%), Positives = 66/223 (29%), Gaps = 33/223 (14%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
++L A F + +RG + + S + ++ K
Sbjct: 89 GFQLLEMILLAGAAFIILKLVRGFMRARQ----------------SPQLASAGMSQNAFK 132
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ ++ FD FL AR Y + +++ E H +
Sbjct: 133 QAPIEHEQTTSTGFANSTAHGDDVPFNLPPGFDTNGFLQGAREHYHTLQNAWNEADYHTM 192
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ + + +F ++ V D +++ A + +++R
Sbjct: 193 AEYLSPELVAEFKAEREA-----ITSVATEVMFIDAELVRADTLTDKWQVSVRF------ 241
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
+ +++IW R + ++ W+++ +
Sbjct: 242 -----KGKYRDLADKQEQPILEIWHLER-LTLTDAPWLIVGVE 278
>gi|297744147|emb|CBI37117.3| unnamed protein product [Vitis vinifera]
Length = 484
Score = 86.5 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/189 (12%), Positives = 56/189 (29%), Gaps = 6/189 (3%)
Query: 48 KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107
K D R + +NE T ++I F DF++E
Sbjct: 289 KGQELAEDVRERWETSDNPVVHKIQDLNESVFGETAAAMSFKEIRRRDPSFSLPDFVSEV 348
Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167
+ +++++ +G ++K V + ++ + ++ I D+++
Sbjct: 349 QEVIRPVLNAYIKGDAETLKKYCSPEVIERCKAEHGAYQTMGIIFDNKILHISDVEVRET 408
Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVR------NIPPSNP 221
+ + I + Q + D + + V W + P
Sbjct: 409 KMMGTSPIIIVAFQTQQVYCVRSADGSIKEGGKDTIHTVYYAWAMQQVDAEELGEGAIYP 468
Query: 222 NWVLISTKL 230
W L +
Sbjct: 469 IWRLREMQQ 477
>gi|157825721|ref|YP_001493441.1| hypothetical protein A1C_03235 [Rickettsia akari str. Hartford]
gi|157799679|gb|ABV74933.1| hypothetical protein A1C_03235 [Rickettsia akari str. Hartford]
Length = 211
Score = 86.5 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 25/229 (10%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M +L+FA I F++ +L LG + E+ + G+ V + + +
Sbjct: 1 MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTRQKSYFGEPVIKDVTYSTVKSNKEE 60
Query: 66 KKKDNLDSINE-----LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
K I + T + M + FDP F+N A+ +++ I+++ ++
Sbjct: 61 KNIPTAQDIKAFKDIIVEHNITAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
+ +L+D R + F + + K + N ++I +
Sbjct: 121 KDSKELSELIDKRYLEAFEKIIPSYG------DVFDSSALSAKYSEIYMFGNNIFIKLLF 174
Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
G+ + + + + WTF RN +W L + +
Sbjct: 175 QGKNVV--------------DKIEDLKEEWTFTRNANTKEVDWFLSNIE 209
>gi|225438141|ref|XP_002278528.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 485
Score = 86.5 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/189 (12%), Positives = 56/189 (29%), Gaps = 6/189 (3%)
Query: 48 KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107
K D R + +NE T ++I F DF++E
Sbjct: 290 KGQELAEDVRERWETSDNPVVHKIQDLNESVFGETAAAMSFKEIRRRDPSFSLPDFVSEV 349
Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167
+ +++++ +G ++K V + ++ + ++ I D+++
Sbjct: 350 QEVIRPVLNAYIKGDAETLKKYCSPEVIERCKAEHGAYQTMGIIFDNKILHISDVEVRET 409
Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVR------NIPPSNP 221
+ + I + Q + D + + V W + P
Sbjct: 410 KMMGTSPIIIVAFQTQQVYCVRSADGSIKEGGKDTIHTVYYAWAMQQVDAEELGEGAIYP 469
Query: 222 NWVLISTKL 230
W L +
Sbjct: 470 IWRLREMQQ 478
>gi|193078111|gb|ABO13052.2| putative membrane protein [Acinetobacter baumannii ATCC 17978]
Length = 326
Score = 86.5 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/221 (13%), Positives = 66/221 (29%), Gaps = 20/221 (9%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
+LL A + FFVF +L KK P++ G+ F + G
Sbjct: 126 LWVLLAAAVAFFVFRKLGS--KKKLAANNPYAPNNGGQNPFGRSAAPT--NTGDNTNIFG 181
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+ + +P FL AR + I + I + +
Sbjct: 182 QSVGGGAATQAPFGSATTNSGNQLPDGSEPASFLRVARQRFNHIQSINSASNIEEIRRYL 241
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
+Y + + + + + +++++ E +++R
Sbjct: 242 TPELYNSMYNDIMENQDQ----DVAEFSNLNAMVVDSATENGQYIVSVRF---------- 287
Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ + +IW FV+ + +WV+ +
Sbjct: 288 -TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 326
>gi|312385733|gb|EFR30159.1| hypothetical protein AND_00421 [Anopheles darlingi]
Length = 340
Score = 86.5 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/200 (19%), Positives = 75/200 (37%), Gaps = 3/200 (1%)
Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87
RG+L + E+PF +G VF ++ E T+
Sbjct: 86 RGILPPRPWLERPFYISCTG-GVFEPYVPPEGDGRMSAISREGAKQAIEQLEKKTKSMMA 144
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
+R I S DFD +DF +A++ Y + E + + ++V R Y + +++ +
Sbjct: 145 IRKIRSYDEDFDARDFATQAQDIYIQAHQTMCEKNKYKLREIVTERAYPELMHNVADKTI 204
Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
+ +KS + + E +T+R Q + A YD+ L+ I
Sbjct: 205 RWQFIKSLEPPRVVHARCTDVITKENIFAQVTVRFHSQQLLAIYDRFGRLMHGSETIEKD 264
Query: 206 VIDIWTFVRNIPPSNPNWVL 225
++ F +++ W L
Sbjct: 265 CLEYVVFEKHLANEYGVWRL 284
>gi|169795016|ref|YP_001712809.1| hypothetical protein ABAYE0855 [Acinetobacter baumannii AYE]
gi|184159199|ref|YP_001847538.1| hypothetical protein ACICU_02879 [Acinetobacter baumannii ACICU]
gi|213158321|ref|YP_002320372.1| hypothetical protein AB57_3049 [Acinetobacter baumannii AB0057]
gi|260556495|ref|ZP_05828713.1| conserved hypothetical protein [Acinetobacter baumannii ATCC 19606]
gi|301345393|ref|ZP_07226134.1| hypothetical protein AbauAB0_04094 [Acinetobacter baumannii AB056]
gi|301511593|ref|ZP_07236830.1| hypothetical protein AbauAB05_08443 [Acinetobacter baumannii AB058]
gi|301594787|ref|ZP_07239795.1| hypothetical protein AbauAB059_03222 [Acinetobacter baumannii
AB059]
gi|332854286|ref|ZP_08435286.1| hypothetical protein HMPREF0021_02869 [Acinetobacter baumannii
6013150]
gi|332865662|ref|ZP_08436488.1| hypothetical protein HMPREF0020_00093 [Acinetobacter baumannii
6013113]
gi|332876029|ref|ZP_08443815.1| hypothetical protein HMPREF0022_03458 [Acinetobacter baumannii
6014059]
gi|169147943|emb|CAM85806.1| conserved hypothetical protein; putative exported protein
[Acinetobacter baumannii AYE]
gi|183210793|gb|ACC58191.1| uncharacterized protein conserved in bacteria [Acinetobacter
baumannii ACICU]
gi|213057481|gb|ACJ42383.1| conserved hypothetical protein [Acinetobacter baumannii AB0057]
gi|260409754|gb|EEX03054.1| conserved hypothetical protein [Acinetobacter baumannii ATCC 19606]
gi|323519143|gb|ADX93524.1| hypothetical protein ABTW07_3101 [Acinetobacter baumannii
TCDC-AB0715]
gi|332728102|gb|EGJ59491.1| hypothetical protein HMPREF0021_02869 [Acinetobacter baumannii
6013150]
gi|332735183|gb|EGJ66263.1| hypothetical protein HMPREF0020_00093 [Acinetobacter baumannii
6013113]
gi|332735895|gb|EGJ66936.1| hypothetical protein HMPREF0022_03458 [Acinetobacter baumannii
6014059]
Length = 325
Score = 86.5 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/221 (13%), Positives = 66/221 (29%), Gaps = 20/221 (9%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
+LL A + FFVF +L KK P++ G+ F + G
Sbjct: 125 LWVLLAAAVAFFVFRKLGS--KKKLAANNPYAPNNGGQNPFGRSAAPT--NTGDNTNIFG 180
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+ + +P FL AR + I + I + +
Sbjct: 181 QSVGGGAATQAPFGSATTNSGNQLPDGSEPASFLRVARQRFNHIQSINSASNIEEIRRYL 240
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
+Y + + + + + +++++ E +++R
Sbjct: 241 TPELYNSMYNDIMENQDQ----DVAEFSNLNAMVVDSATENGQYIVSVRF---------- 286
Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ + +IW FV+ + +WV+ +
Sbjct: 287 -TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 325
>gi|229586715|ref|YP_002845216.1| hypothetical protein RAF_ORF0564 [Rickettsia africae ESF-5]
gi|228021765|gb|ACP53473.1| Unknown [Rickettsia africae ESF-5]
Length = 211
Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 25/229 (10%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M +L+FA I F++ +L LG + E+ + G+ V + + +
Sbjct: 1 MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSIVKSNKEE 60
Query: 66 KKKDNLDSINE-----LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
K I + T + M + FDP F+N A+ +++ I+++ ++
Sbjct: 61 KNIPTAQDIKAFKDIIVEHNITAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
+ +L+D R ++F + K + N ++I +
Sbjct: 121 KDAKELSELIDKRYLEEFEKITPSYG------DFFDSSTLSAKYSEIYMFGNNIFIKLLF 174
Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
G+ + + + + WTF RN +W L + +
Sbjct: 175 QGKNVV--------------DKIEDLKEEWTFTRNANTKEVDWFLSNIE 209
>gi|152981843|ref|YP_001354800.1| hypothetical protein mma_3110 [Janthinobacterium sp. Marseille]
gi|151281920|gb|ABR90330.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
Length = 307
Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/228 (12%), Positives = 66/228 (28%), Gaps = 24/228 (10%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F M S ++ L F F++ R + K GN S + + +
Sbjct: 102 FASMISTILMVALLGFAAMFIY---RMIKNKSAGNNAQPS------FANGYSAKNSTPDI 152
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
G G + + + DFD + F+ A+ + + ++ +
Sbjct: 153 GSGLNQQYQQPSALQSAAPMASGAAYEAVNELPADFDVESFIRNAKTYFIRLQAAWDKAD 212
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
++ I + + F + + + V + + N +I+
Sbjct: 213 INDIREFTTPEM---FAELKLQLQERGATPNVTDVVTLNGEFYGVETVGNDYIASIKF-- 267
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++ +D + W + + N WVL +
Sbjct: 268 ---------TGMIREADHAPTEPFSEAWNLSKPVN-GNGGWVLAGIQQ 305
>gi|258542756|ref|YP_003188189.1| mitochondrial import inner membrane translocase subunit Tim44
[Acetobacter pasteurianus IFO 3283-01]
gi|256633834|dbj|BAH99809.1| mitochondrial import inner membrane translocase subunit Tim44
[Acetobacter pasteurianus IFO 3283-01]
gi|256636893|dbj|BAI02862.1| mitochondrial import inner membrane translocase subunit Tim44
[Acetobacter pasteurianus IFO 3283-03]
gi|256639946|dbj|BAI05908.1| mitochondrial import inner membrane translocase subunit Tim44
[Acetobacter pasteurianus IFO 3283-07]
gi|256643002|dbj|BAI08957.1| mitochondrial import inner membrane translocase subunit Tim44
[Acetobacter pasteurianus IFO 3283-22]
gi|256646057|dbj|BAI12005.1| mitochondrial import inner membrane translocase subunit Tim44
[Acetobacter pasteurianus IFO 3283-26]
gi|256649110|dbj|BAI15051.1| mitochondrial import inner membrane translocase subunit Tim44
[Acetobacter pasteurianus IFO 3283-32]
gi|256652097|dbj|BAI18031.1| mitochondrial import inner membrane translocase subunit Tim44
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655154|dbj|BAI21081.1| mitochondrial import inner membrane translocase subunit Tim44
[Acetobacter pasteurianus IFO 3283-12]
Length = 323
Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/228 (14%), Positives = 69/228 (30%), Gaps = 28/228 (12%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F M S LI L + F V + + V + + G
Sbjct: 121 FGGMHSFFSLIGLMLQVAFVVMIVMWLV-----------------RRFTGNKSSGGSGFS 163
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
N + N ++ + D + F + + I ++ +
Sbjct: 164 MGAGGVANSPGVTPGAIPSAGGNAALQINTA-----DYQAF----QQTLMDIQTAWNQQN 214
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
+ A++++ + FN+ LS S S V + A E + T+ +
Sbjct: 215 IAAMQQMATPEMVSYFNEQLSALASQGARNVVSDVHFIQGDLAEAWRENGMDFATVAMRY 274
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
I + + +I + ++WTF R W+L + +
Sbjct: 275 SLIDLTTNAMGQVIQGSSTEPVNITELWTFTRP--SRGGRWLLSAIQQ 320
>gi|34580481|ref|ZP_00141961.1| hypothetical protein [Rickettsia sibirica 246]
gi|157828477|ref|YP_001494719.1| hypothetical protein A1G_03400 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933195|ref|YP_001649984.1| hypothetical protein RrIowa_0720 [Rickettsia rickettsii str. Iowa]
gi|28261866|gb|EAA25370.1| unknown [Rickettsia sibirica 246]
gi|157800958|gb|ABV76211.1| hypothetical protein A1G_03400 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908282|gb|ABY72578.1| hypothetical protein RrIowa_0720 [Rickettsia rickettsii str. Iowa]
Length = 211
Score = 86.1 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 25/229 (10%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M +L+FA I F++ +L LG + E+ + G+ V + + +
Sbjct: 1 MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSIVKSNKEE 60
Query: 66 KKKDNLDSINE-----LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
K I + T + M + FDP F+N A+ +++ I+++ ++
Sbjct: 61 KNIPTAQDIKAFKDIIVEHNITAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
+ +L+D R ++F + K + N ++I +
Sbjct: 121 KDAKELSELIDKRYLEEFEKITPSYG------DFFDSSALSAKYSEIYMFGNNIFIKLLF 174
Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
G+ + + + + WTF RN +W L + +
Sbjct: 175 QGKNVV--------------DKIEDLKEEWTFTRNANTKEVDWFLSNIE 209
>gi|254470189|ref|ZP_05083593.1| import inner membrane translocase, subunit Tim44 [Pseudovibrio sp.
JE062]
gi|211960500|gb|EEA95696.1| import inner membrane translocase, subunit Tim44 [Pseudovibrio sp.
JE062]
Length = 351
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/228 (11%), Positives = 73/228 (32%), Gaps = 15/228 (6%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
+++ A + + L L + + +G + +++ + +
Sbjct: 129 LIVQALLIGGGIMLLMRFLRSRQ--QPQAAGAYGHHQQQAQQSQPFTFNDAGAQDAPRRS 186
Query: 73 SINELFPIGTRLNKVMR--------DIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
+ + G + + DF + + ++
Sbjct: 187 GSSGIPNTGFGGGQAPQFEEQPVFSTEADDEIGLTADDF-DAFEALLTTVWTAYGSEDYG 245
Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
I ++ + F + L SN + + + + A E + Y ++ + +
Sbjct: 246 KIREIATPEIMGYFAEELGKAASNGLINEVRDIKLLQGDLTEAWREGDKDYASVAMRYES 305
Query: 185 ISASYDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
I ++ N ++ + ++ + I+IWTF+R NW L + +
Sbjct: 306 IDVMRERATNKVVEGNADVPEERIEIWTFIRGAGE---NWQLSAIQQA 350
>gi|326511515|dbj|BAJ91902.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326516904|dbj|BAJ96444.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 481
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 50/166 (30%)
Query: 48 KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107
K D R + INE T R+I F DF+ +
Sbjct: 285 KGQEVAEDVRERWETSDHPVVQKIQDINETIFEETATAASFREIRRRDPSFSLSDFIGDV 344
Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167
+ + ++ ++ +G + ++K + + S ++ I D +
Sbjct: 345 QEMIKPVLTAYSKGDLKTLKKYCTKEILERCEGERKGYASQGIFFDHKILHISDADVRET 404
Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213
+ +T I + Q I DK+ + + V W
Sbjct: 405 KMLGSTPIILVMFRTQEIHCIRDKEGKVTEGGQDSIRTVYYQWAMQ 450
>gi|262373164|ref|ZP_06066443.1| conserved hypothetical protein [Acinetobacter junii SH205]
gi|262313189|gb|EEY94274.1| conserved hypothetical protein [Acinetobacter junii SH205]
Length = 322
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 31/224 (13%), Positives = 67/224 (29%), Gaps = 21/224 (9%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
+LL A + FFVF + KK P++ +G+ F + N
Sbjct: 117 LWVLLAAAVAFFVFRKF--GAKKKLATANPYAPNNNGQNNFGRPVSPQPTMRQTAGDNTN 174
Query: 71 LDSIN---ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
+ + + M + +P FL AR + I V I
Sbjct: 175 IFGQSVGGGVATQAPFGGASMSSGNQLPDGTEPAAFLRIARQRFNHIQSVNSASNVEEIR 234
Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
+ + +Y + ++ + + + ++ E +++R
Sbjct: 235 RYLTPELYNSMYSDIM----ANQDQDVAEFSNLNAMVAESTTENGQYVVSVRF------- 283
Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ + +IW FV+ + +WV+ +
Sbjct: 284 ----TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 322
>gi|90418181|ref|ZP_01226093.1| conserved hypothetical protein with Tim44-like domain [Aurantimonas
manganoxydans SI85-9A1]
gi|90337853|gb|EAS51504.1| conserved hypothetical protein with Tim44-like domain [Aurantimonas
manganoxydans SI85-9A1]
Length = 203
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/198 (14%), Positives = 60/198 (30%), Gaps = 4/198 (2%)
Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93
++ N P G +E + ++ S L
Sbjct: 8 RSRNPSPARANGGGHTERRAYEEPTQPAGNGSFRIPSIGSGAGLGGGSAATGAATAAAEP 67
Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153
L+ + +F A+ + + + LS ++ +
Sbjct: 68 SDEIGITDADLDTFEQKLHEVQAAFSREDYAALRTITTPEIMSYLAEELSENATSGRKND 127
Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTF 212
V ++ I A E +T Y ++ + I D+ ++ DP+ + ++WTF
Sbjct: 128 VLDVKLEQGDIAEAWREGDTEYASLAMRYSSIDVMRDRTTGEVVEGDPDTPTETTELWTF 187
Query: 213 VRNIPPSNPNWVLISTKL 230
VR+ W L + +
Sbjct: 188 VRD---KGGEWKLSAIQE 202
>gi|293603149|ref|ZP_06685582.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
gi|292818380|gb|EFF77428.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
Length = 252
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 33/220 (15%), Positives = 72/220 (32%), Gaps = 21/220 (9%)
Query: 14 LLFAFITF---FVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
LL A + F F+ +LRG G +T + F+G + + R +
Sbjct: 44 LLIAAVVFAVMFIIRRLRGA-GPRTATQGAFNGANNAPGQQQQPMWREALKPTAAAAPAA 102
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+ + P + V DFD +FL +A+ + I + G + +
Sbjct: 103 AAAAAPVAPPAVLPKAGEDNNWFVPGDFDTPNFLKQAKEQFVRIQAVWDSGSTDGLRDFL 162
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
+ + L+ R + V + + +++ + ++R
Sbjct: 163 TDDLITELKPQLAER---GAAPNKTEVVLLNAEMLGIETVSDGHLASVRF---------- 209
Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+L S + ++W + +N W+L +
Sbjct: 210 -SGMLRESPGAEAFRFEEVWNLFKP---ANGGWLLAGIQQ 245
>gi|330828529|ref|YP_004391481.1| Import inner membrane translocase subunit Tim44 [Aeromonas veronii
B565]
gi|328803665|gb|AEB48864.1| Import inner membrane translocase, subunit Tim44 [Aeromonas veronii
B565]
Length = 286
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 18/185 (9%), Positives = 57/185 (30%), Gaps = 15/185 (8%)
Query: 46 SGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLN 105
GK + + + + FD FL
Sbjct: 116 KGKVATPQPQQAAYAGYQPPQSAAPQQFEQSNSAPQATGFADSDVPFRLPPGFDMNSFLA 175
Query: 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165
AR+ Y + +++ + + + + V +++ + + + + V D +++
Sbjct: 176 GARDHYRTLQEAWNKNDLEKVREYVSPELFEQLKAERAELTGD----QHTEVMYVDTQLV 231
Query: 166 NASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
A + +++R + ++ + ++W R++ +N W +
Sbjct: 232 RADYGSDWAQVSVRF-----------SGRYMDRQEQVEEDIKEVWHLERDLAKNNAPWHI 280
Query: 226 ISTKL 230
+ +
Sbjct: 281 VGIEQ 285
>gi|238650294|ref|YP_002916146.1| hypothetical protein RPR_00625 [Rickettsia peacockii str. Rustic]
gi|238624392|gb|ACR47098.1| hypothetical protein RPR_00625 [Rickettsia peacockii str. Rustic]
Length = 211
Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats.
Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 25/229 (10%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M +L+FA I F++ +L LG + E+ + G+ V + + +
Sbjct: 1 MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPVIKDVTYSIVKSNKEE 60
Query: 66 KKKDNLDSIN-----ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
K I + T + M + FDP F+N A+ +++ I+++ ++
Sbjct: 61 KNIPTAQDIKVFKDIIVEHNITAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
+ +L+D R ++F + K + N ++I +
Sbjct: 121 KDAKELSELIDKRYLEEFEKITPSYG------DFFDSSALSAKYSEIYMFGNNIFIKLLF 174
Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
G+ + + + + WTF RN +W L + +
Sbjct: 175 QGKNVV--------------DKIEDLKEEWTFTRNANTKEVDWFLSNIE 209
>gi|332716434|ref|YP_004443900.1| hypothetical protein AGROH133_11996 [Agrobacterium sp. H13-3]
gi|325063119|gb|ADY66809.1| hypothetical protein AGROH133_11996 [Agrobacterium sp. H13-3]
Length = 360
Score = 85.8 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 32/230 (13%), Positives = 63/230 (27%), Gaps = 13/230 (5%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGN----------EKPFSGFFSGKYVFSKRDERGIITL 62
+L A I V +R ++ G SG +
Sbjct: 132 LLQVALIGLLVMFAMRFFASRRQGQPAFGGAGGSQRTDHSGSSFNGGPQAGPSASSFKIP 191
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
G + + + L + + + ++
Sbjct: 192 KIGALAGAAGGAAAATAATAKPVAHANAMSEGDEIGITQSDLEVFQKMLQDVQAAYGAED 251
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
+ KL + LS ++ V + + A EE Y T+ +
Sbjct: 252 YGTLRKLTTPEAMSYLAEELSDNATSGVKNDVRDVTLLQGDVAEAWHEEGQDYATVAMRY 311
Query: 183 QFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
I D+ +I D + + +++WTFVR N NW + + +
Sbjct: 312 SAIDIMRDRTSGKVIEGDEQHPSEAVEMWTFVRR--GGNDNWQVAAIQAA 359
>gi|302836449|ref|XP_002949785.1| hypothetical protein VOLCADRAFT_104441 [Volvox carteri f.
nagariensis]
gi|300265144|gb|EFJ49337.1| hypothetical protein VOLCADRAFT_104441 [Volvox carteri f.
nagariensis]
Length = 393
Score = 85.8 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 50/131 (38%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
G+ ++ MR+I FD F+ + +V +F + + A+ + + + F
Sbjct: 228 TGSEASRAMREIRVRDPAFDMNRFVQSVKLDAPTVVRAFLKHDLEALSQHCGPELLERFA 287
Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199
S++ I D++I+ + ++ +I + Q + + DK +I
Sbjct: 288 GIFKHFNEQGVFEDPSILFIGDVEIVEVRLMDDDPFIIAQFHCQQLKCTRDKFGNVIDGS 347
Query: 200 PEIFGKVIDIW 210
+V W
Sbjct: 348 ANQIQRVYYFW 358
>gi|319784935|ref|YP_004144411.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
ciceri biovar biserrulae WSM1271]
gi|317170823|gb|ADV14361.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
ciceri biovar biserrulae WSM1271]
Length = 327
Score = 85.8 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 31/223 (13%), Positives = 71/223 (31%), Gaps = 14/223 (6%)
Query: 10 DFLILLFAF-ITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
F LL A I + L +R ++ + + + +G T G+
Sbjct: 117 MFGFLLQALLIGGAIMLAIRFF---RSQSARGPAPALAGAGNAQASRFENRSTAGQQTAG 173
Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
G +I D F + + ++F A+ +
Sbjct: 174 SFTIPGFGGGSGGGSPAAASEEI--TLAQTDLDAF----QQLLTDVQEAFGREDHAALRR 227
Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
V + ++ L+ + + + + I + E+ Y T + + +
Sbjct: 228 AVTPEMVSYLSEELADNAQKGLRNEVTDITLLQADIAESWREDERDYATAALRYESRDVT 287
Query: 189 YDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++ +++ D + + ++WTFVR NW L + +
Sbjct: 288 RERASGKIVAGDDDHPTETTELWTFVRENGS---NWKLSAIQA 327
>gi|217978356|ref|YP_002362503.1| import inner membrane translocase subunit Tim44 [Methylocella
silvestris BL2]
gi|217503732|gb|ACK51141.1| import inner membrane translocase subunit Tim44 [Methylocella
silvestris BL2]
Length = 329
Score = 85.8 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/196 (13%), Positives = 54/196 (27%), Gaps = 2/196 (1%)
Query: 37 NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT 96
+ + + + +
Sbjct: 135 FAMNYFRNRRPAMQGAGYGGAPGAGPFGSNRDNQGYGRPQQGYGAGPFAGAAPGGRQSPL 194
Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
P DF + A+ ++ + ++A+ L + F + L K S
Sbjct: 195 QIQPADF-SAFEQRLFAVQKAYSDEDMNALRALSTPEMASYFAEELGENARKGVVNKLSK 253
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRN 215
V + A E N Y ++ + I + D+ L++ DP + +IWTF R
Sbjct: 254 VEFLQGDLAEAWSEANGDYASVAMRFSMIDQTLDRATGRLVAGDPSAPQQATEIWTFTRR 313
Query: 216 IPPSNPNWVLISTKLG 231
+W L +
Sbjct: 314 SGGGAQDWKLSGIQQA 329
>gi|159185868|ref|NP_356915.2| hypothetical protein Atu3705 [Agrobacterium tumefaciens str. C58]
gi|159141002|gb|AAK89700.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 215
Score = 85.8 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 31/200 (15%), Positives = 60/200 (30%), Gaps = 7/200 (3%)
Query: 33 KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIV 92
++T + S + + I G + N V
Sbjct: 21 QRTDHSGSSFNGGSQAGPSASSFKIPKIGALAGAAGGATAAAAATAKPAPHANAVSEGDE 80
Query: 93 SVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNV 152
T D + F + + + ++ + KL + LS ++
Sbjct: 81 IGITQGDLETF----QKMLQDVQSAYGAEDYGTLRKLTTPEAMSYLAEELSDNATSGVKN 136
Query: 153 KSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWT 211
V + + A EE Y T+ + I D+ +I D + +++WT
Sbjct: 137 DVRDVTLLQGDVAEAWHEEGQDYATVAMRYSAIDIMRDRTSGKVIEGDEHKPSEAVEMWT 196
Query: 212 FVRNIPPSNPNWVLISTKLG 231
FVR N NW + + +
Sbjct: 197 FVRRPG--NDNWQVAAIQAA 214
>gi|260549298|ref|ZP_05823518.1| import inner membrane translocase subunit Tim44 [Acinetobacter sp.
RUH2624]
gi|260407704|gb|EEX01177.1| import inner membrane translocase subunit Tim44 [Acinetobacter sp.
RUH2624]
Length = 328
Score = 85.8 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/221 (13%), Positives = 69/221 (31%), Gaps = 20/221 (9%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
+LL A + FFVF +L G KK P++ +G+ F + +
Sbjct: 128 LWVLLAAAVAFFVFRKLGG--KKKLAANNPYAPNSNGQNTFGRSAAPTNSNDNTNIFGQS 185
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+ + + +P FL AR + I + I + +
Sbjct: 186 VGG--GTATQAPFGGATTSNGNQLPDGSEPASFLRVARQRFNHIQSINSASNIEEIRRYL 243
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
+Y + + + + + +++++ E +++R
Sbjct: 244 TPELYNSMYNDIMENQDQ----DVAEFSNLNAMVVDSATENGQYIVSVRF---------- 289
Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ + +IW FV+ + +WV+ +
Sbjct: 290 -TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 328
>gi|196001245|ref|XP_002110490.1| hypothetical protein TRIADDRAFT_54556 [Trichoplax adhaerens]
gi|190586441|gb|EDV26494.1| hypothetical protein TRIADDRAFT_54556 [Trichoplax adhaerens]
Length = 473
Score = 85.8 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 22/176 (12%), Positives = 59/176 (33%), Gaps = 3/176 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEA 113
+ ++ D L + +++ + +I + +F + FL + +
Sbjct: 277 ESDNVVIRATRVVTDRLSDAFSGIFSPSEMSQTLAEISKIDPNFSKEKFLLHFQHRIMPS 336
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
++++F G + ++ Y + + + ++ + D+ I A I E
Sbjct: 337 VLEAFLRGDLPILKDWCHESAYSVLEARIKQLTGMGRKLDFKVLDVRDIDIAMAKIMEQG 396
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ + Q I D ++ D V +W R+ + W ++
Sbjct: 397 PVLVMTFQAQQILVLRDSSGKVVEGDENHIENVQYVWAMCRDQSIYDAHSAWRVLE 452
>gi|42569661|ref|NP_181151.3| ATTIM44-2; protein-transmembrane transporting ATPase [Arabidopsis
thaliana]
gi|53828527|gb|AAU94373.1| At2g36070 [Arabidopsis thaliana]
gi|330254108|gb|AEC09202.1| translocase inner membrane subunit 44-2 [Arabidopsis thaliana]
Length = 469
Score = 85.8 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/193 (15%), Positives = 58/193 (30%), Gaps = 6/193 (3%)
Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100
S K D R + +NE T ++I F
Sbjct: 267 MSEPVVNKSQEIAEDVREKWETSDNPIVHKIQDMNERIFEETGSASTYKEIRRRDPSFSL 326
Query: 101 KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160
DF++E + + +++++ +G ++K + + S L+ +
Sbjct: 327 PDFVSEIQEAIRPVLNAYSKGDAKTLKKYCSKELIERCTAEHRAFTSQGYFFDHKLLHVS 386
Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVR----NI 216
++ I + T I +R Q I D+D + + V W + +
Sbjct: 387 EVDIQETKMMGTTPVIIVRFQTQEIFCVRDQDGKIKEGGQDTIHTVYYDWAMQQVDAAEL 446
Query: 217 PPS--NPNWVLIS 227
P W L
Sbjct: 447 GEDAIYPIWRLRE 459
>gi|126642670|ref|YP_001085654.1| hypothetical protein A1S_2635 [Acinetobacter baumannii ATCC 17978]
Length = 291
Score = 85.8 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/221 (13%), Positives = 66/221 (29%), Gaps = 20/221 (9%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
+LL A + FFVF +L KK P++ G+ F + G
Sbjct: 91 LWVLLAAAVAFFVFRKLGS--KKKLAANNPYAPNNGGQNPFGRSAAPT--NTGDNTNIFG 146
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+ + +P FL AR + I + I + +
Sbjct: 147 QSVGGGAATQAPFGSATTNSGNQLPDGSEPASFLRVARQRFNHIQSINSASNIEEIRRYL 206
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
+Y + + + + + +++++ E +++R
Sbjct: 207 TPELYNSMYNDIMENQDQ----DVAEFSNLNAMVVDSATENGQYIVSVRF---------- 252
Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ + +IW FV+ + +WV+ +
Sbjct: 253 -TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 291
>gi|324512642|gb|ADY45230.1| Import inner membrane translocase subunit tim-44 [Ascaris suum]
Length = 465
Score = 85.4 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 63/160 (39%), Gaps = 4/160 (2%)
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN-SYEAIVDSFFEGKVHAIEKLV 130
D I +F + +++V+ +I + FD ++L ++++F G + ++
Sbjct: 296 DRITSVFTTKSEVSEVLTEIAKIDPSFDKVEWLRFCEREVIPNVLEAFIRGDLKILQDWC 355
Query: 131 DSRVYQDFNDSLSTRKSNEK-NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
R Y + K S ++ I +++++ + + + I I+
Sbjct: 356 HERAYNALAAVVKEYKKVNFSTADSRVIDISKVEMVSGKMMDQGPVLIITFQAFMINVVK 415
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ + ++ D +V +W R++ NP W L+
Sbjct: 416 NLEGKVVQGDENNPVRVHHVWVMCRDMEEYNPAVAWKLLE 455
>gi|15892527|ref|NP_360241.1| hypothetical protein RC0604 [Rickettsia conorii str. Malish 7]
gi|15619688|gb|AAL03142.1| unknown [Rickettsia conorii str. Malish 7]
Length = 211
Score = 85.4 bits (209), Expect = 6e-15, Method: Composition-based stats.
Identities = 37/229 (16%), Positives = 81/229 (35%), Gaps = 25/229 (10%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M +L+FA I F++ +L LG + E+ + G+ + + + +
Sbjct: 1 MSPQIIELLIFAVIAFYIINKLITTLGSTSEEEQTKQKSYFGEPIIKDVTYSIVKSNKEE 60
Query: 66 KKKDNLDSINE-----LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
K I + T + M + FDP F+N A+ +++ I+++ ++
Sbjct: 61 KNIPTAQDIKAFKDIIVEHNITAIVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
+ +L+D R ++F + K + N ++I +
Sbjct: 121 KDAKELSELIDKRYLEEFEKITPSYG------DFFDSSALSAKYSEIYMFGNNIFIKLLF 174
Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
G+ + + + + WTF RN +W L + +
Sbjct: 175 QGKNVV--------------DKIEDLKEEWTFTRNANTKEVDWFLSNIE 209
>gi|145352217|ref|XP_001420450.1| MPT family transporter: inner membrane translocase (import) Tim44
[Ostreococcus lucimarinus CCE9901]
gi|144580684|gb|ABO98743.1| MPT family transporter: inner membrane translocase (import) Tim44
[Ostreococcus lucimarinus CCE9901]
Length = 286
Score = 85.4 bits (209), Expect = 6e-15, Method: Composition-based stats.
Identities = 29/200 (14%), Positives = 67/200 (33%), Gaps = 10/200 (5%)
Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
E K D R + + T + R I
Sbjct: 76 EGLKKTAPYAKGAELAEDMRERWETSDSPVVHRIQDFQDNLFSETEQGEAYRMIRQRDPM 135
Query: 98 FDPKDFLNEARNSYEAIVDSFFEGKVHAIE-KLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
F+ DF+ E R ++ ++ +G V A++ + S + + + ++ K ++V +
Sbjct: 136 FNINDFIAEVRRDIPKVLGAYLKGDVEALKQTNISSEMLERLSGQMNLWKHEGQHVDPRI 195
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV--- 213
+ + +++++ + EN + + Q I+ DK ++ + V +W
Sbjct: 196 LDLSEVELMEVRLMENEPLVVLTFSCQQINCVRDKSGAVVEGAEDDIQSVHYLWAMQLVD 255
Query: 214 RNIPPSN------PNWVLIS 227
+ + P W L
Sbjct: 256 KEYTTKDGRKYTKPTWALRE 275
>gi|307822898|ref|ZP_07653128.1| import inner membrane translocase subunit Tim44 [Methylobacter
tundripaludum SV96]
gi|307735673|gb|EFO06520.1| import inner membrane translocase subunit Tim44 [Methylobacter
tundripaludum SV96]
Length = 319
Score = 85.4 bits (209), Expect = 7e-15, Method: Composition-based stats.
Identities = 30/238 (12%), Positives = 71/238 (29%), Gaps = 28/238 (11%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F ++ D L+F I F ++ + KK G + + +
Sbjct: 101 FQGINFTDM--LIFGGIAFLLY---KWFAAKKAGAAQRPVYNRTADNSYQDTASSDHEPE 155
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVS--------VYTDFDPKDFLNEARNSYEAI 114
D+ + + V DFD + FL+ A+ ++ +
Sbjct: 156 PTQANPAGFDTDILFKKDNNATPSYAQPVQQDAGFASAVVPKDFDQQAFLSGAKIAFTEL 215
Query: 115 VDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTV 174
++ E + I L +V+ + D L + + + + + +++ + +
Sbjct: 216 QKAWDERDLAEIRGLTTDKVFAEIQDQLKASDAANR----TEILRLEAELLEVREVGSEL 271
Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ +V ++W F++ P W L + E
Sbjct: 272 EAVVLFDTIMR-----------EDGNAQAAQVREVWHFIKPKVSIQPKWYLDGIQQLE 318
>gi|311103718|ref|YP_003976571.1| Tim44-like domain-containing protein [Achromobacter xylosoxidans
A8]
gi|310758407|gb|ADP13856.1| Tim44-like domain protein [Achromobacter xylosoxidans A8]
Length = 334
Score = 85.0 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 31/220 (14%), Positives = 73/220 (33%), Gaps = 21/220 (9%)
Query: 14 LLFAFITF---FVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
LL A + F F+ +LRG G +T + F+G + + R +
Sbjct: 126 LLIAAVVFAVMFIIRRLRGA-GPRTATQGAFNGSNNTPGQQQQPMWRESLKPAAPAAAAA 184
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+ + + V DFD +FL +A++ + I + G + + +
Sbjct: 185 VAAPVAAAAPAAMPKAGDDNNWFVPGDFDTPNFLKQAKDQFVRIQAVWDSGSTDGLREFL 244
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
+ + L+ R + V + + +++ + ++R
Sbjct: 245 TDDLITELKPQLAER---GAAPNKTEVVLLNAEMLGIETVSDGHLASVRF---------- 291
Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+L + + ++W + +N W+L +
Sbjct: 292 -SGMLREAPGAEAFRFEEVWNLFKP---ANGGWLLAGIQQ 327
>gi|159479570|ref|XP_001697863.1| mitochondrial inner membrane translocase [Chlamydomonas
reinhardtii]
gi|158273961|gb|EDO99746.1| mitochondrial inner membrane translocase [Chlamydomonas
reinhardtii]
Length = 264
Score = 85.0 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 50/131 (38%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
G+ ++ MR+I FD F+ + +V +F + + + + + + F
Sbjct: 99 TGSEASRAMREIRVRDQAFDMNRFVQSVKLDAPVVVKAFLKHDLDTLSQHCGPELMERFA 158
Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199
S++ I D++I+ + ++ +I + Q + + DK ++ D
Sbjct: 159 GIFKHFNEQGLFEDPSILFIGDVEIVEVRLMDDDPFIIAQFHCQQLKCTRDKFGNVVDGD 218
Query: 200 PEIFGKVIDIW 210
+V W
Sbjct: 219 ANTIQRVYYFW 229
>gi|104784399|ref|YP_610897.1| hypothetical protein PSEEN5505 [Pseudomonas entomophila L48]
gi|95113386|emb|CAK18114.1| conserved hypothetical protein; putative signal peptide
[Pseudomonas entomophila L48]
Length = 281
Score = 85.0 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 28/229 (12%), Positives = 71/229 (31%), Gaps = 32/229 (13%)
Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61
+F+ IL F + FL R + ++ + + Y + +
Sbjct: 83 MFMGDGFEGMQILDFLLMGLIAFLVFRFIAARRRQQQPQHAAAGHAPYQREAQPQAAPQP 142
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
+ G V +++ F+ FL AR+ ++++ +
Sbjct: 143 IFGG-----------------SAAPVASPVINAPAWFNEASFLAAARSHFQSLQQHWDAN 185
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
++ I + V ++ R + +S+ + D+++ + T+
Sbjct: 186 EMDKIAEFVTPQMLDFLK---RERAEEGEGFQSTYIDDLDVQLEGVDDRADKTIATLTFR 242
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D + + W R + P W+L +
Sbjct: 243 GVSKTSRFD-QGEV----------FNESWHMERAQGENQP-WLLAGIRQ 279
>gi|307311318|ref|ZP_07590961.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
meliloti BL225C]
gi|307318851|ref|ZP_07598283.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
meliloti AK83]
gi|306895572|gb|EFN26326.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
meliloti AK83]
gi|306899619|gb|EFN30247.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
meliloti BL225C]
Length = 337
Score = 85.0 bits (208), Expect = 9e-15, Method: Composition-based stats.
Identities = 25/211 (11%), Positives = 58/211 (27%), Gaps = 12/211 (5%)
Query: 23 VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82
+ ++ G ++ P + S R
Sbjct: 137 LAMRFFG-RNQRPAYSAPSASGRSSAATAGSPSFRIPRIGEGTGGAGAASLATRSSAAAP 195
Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
V L+ + ++ A+ +L + L
Sbjct: 196 ASGNGDEITVGQED-------LDRFEAMLRDVQAAYGAEDYAALRRLTTPEAMSYLAEEL 248
Query: 143 STRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK-DNLLISSDPE 201
S + + V + + A E + Y T+ + + + D+ ++S D +
Sbjct: 249 SDNATKGLKNEVRDVHLVQGDLAEAWKENGSDYATVAMRYESVDVVRDRATGRVVSGDAD 308
Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ ++IWTF R +W + + + E
Sbjct: 309 RPTEAVEIWTFQRK---PGADWQVSAIQGVE 336
>gi|326796036|ref|YP_004313856.1| import inner membrane translocase subunit Tim44 [Marinomonas
mediterranea MMB-1]
gi|326546800|gb|ADZ92020.1| import inner membrane translocase subunit Tim44 [Marinomonas
mediterranea MMB-1]
Length = 284
Score = 84.6 bits (207), Expect = 9e-15, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 76/228 (33%), Gaps = 39/228 (17%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F + G ILLFA I F+ + KR +
Sbjct: 94 FDGISFG--DILLFALI-GFLIYKFF--------------------IAPKKRAAQQAQAA 130
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
G G ++ + P+ + + + F+ + F+ EA+N Y A+ ++ +
Sbjct: 131 GHGAYREMPQDSFQPSPMAGGAGFGGQPEIQLPPGFNEQAFVAEAKNHYIALQKAWDDSN 190
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
I++ V +Y + R + + V + ++ +T I+++
Sbjct: 191 FETIQEYVSPELYNMLKE---ERAKLGADKPKTDVVSLMVDLVRGEFIGSTASISLQF-- 245
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ + +IW +N+ ++ +WV++ +
Sbjct: 246 ---------SGWIKEGSETS--ETKEIWHLEKNMSDASSSWVIVGIQQ 282
>gi|15965783|ref|NP_386136.1| putative transmembrane protein [Sinorhizobium meliloti 1021]
gi|15075052|emb|CAC46609.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
Length = 276
Score = 84.6 bits (207), Expect = 9e-15, Method: Composition-based stats.
Identities = 25/211 (11%), Positives = 58/211 (27%), Gaps = 12/211 (5%)
Query: 23 VFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82
+ ++ G ++ P + S R
Sbjct: 76 LAMRFFG-RNQRPAYSAPSASGRSSAATAGSPSFRIPRIGEGTGGAGAASLATRSSAAAP 134
Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
V L+ + ++ A+ +L + L
Sbjct: 135 ASGNGDEITVGQED-------LDRFEAMLRDVQAAYGAEDYAALRRLTTPEAMSYLAEEL 187
Query: 143 STRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK-DNLLISSDPE 201
S + + V + + A E + Y T+ + + + D+ ++S D +
Sbjct: 188 SDNATKGLKNEVRDVHLVQGDLAEAWKENGSDYATVAMRYESVDVVRDRATGRVVSGDAD 247
Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ ++IWTF R +W + + + E
Sbjct: 248 RPTEAVEIWTFQRK---PGADWQVSAIQGVE 275
>gi|300313191|ref|YP_003777283.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
gi|300075976|gb|ADJ65375.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
Length = 317
Score = 84.6 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/227 (13%), Positives = 61/227 (26%), Gaps = 16/227 (7%)
Query: 6 MDSGDFLILLFAFI-TFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK 64
M +L A + +FL G++ N P +G
Sbjct: 106 MGGLLGSLLTIALLCAAVIFLIRMFARGREAQNNNPAYATPMPGVSPIGSAAGATPEIGS 165
Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
G + N + G + FD F+ A+ + + ++ V+
Sbjct: 166 GLRDINPPPALQGNAYGAAAQPAQIQQWGIPEGFDTAGFVRNAKTYFIRLQAAWDRADVN 225
Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
I + + F + ++ V D +++ T+R
Sbjct: 226 DIREFTTPEM---FAELRMQLTERGAAPNATDVVQLDAQLLGIETMAFDYLATVRFQ--- 279
Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
L+ + +IW + + S WVL +
Sbjct: 280 --------GLIKEAPDVSAEPFAEIWNLSKPLNGSGG-WVLAGIQQV 317
>gi|126308283|ref|XP_001372116.1| PREDICTED: hypothetical protein [Monodelphis domestica]
Length = 310
Score = 84.6 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 51/160 (31%), Gaps = 2/160 (1%)
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
K L E G +R + DF K F +A+ + +
Sbjct: 101 SKAGLQQKTEKLKQGVASQLAIRKVREYDADFRTKTFPEKAQQIFVEAHQCLNTSDHDRL 160
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQF 184
LV R + + + + + V+S + S +T+R+ +
Sbjct: 161 HALVTERCFPEMVWDIQLKTVHWNFVESLEPPRVVHVRCPNMVSEGNIYGQVTVRMHTRQ 220
Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
A YD+ L+ ++ V++ F R++ W
Sbjct: 221 TLAIYDRFGRLMYGQEDVPKDVLEYVVFERHLTNPYGAWR 260
>gi|296476478|gb|DAA18593.1| 39S ribosomal protein L45, mitochondrial precursor [Bos taurus]
Length = 306
Score = 84.6 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 52/171 (30%), Gaps = 2/171 (1%)
Query: 56 ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115
K+ L E +R I +F KDF +A++ +
Sbjct: 90 PPEGDARVSSLSKEGLAQRTERLKKNVASQLSIRRIKESDPNFKVKDFPEKAQDIFIEAH 149
Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENT 173
+ LV + D + + V+S + +
Sbjct: 150 LCLNNSDHDRLHTLVTENCFPDMVWDIKYKTVRWSFVESLEPPQVVQVRCSSLVTKSNAY 209
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
+T+R+ + A YD+ L+ ++ V++ F +++ +W
Sbjct: 210 GQVTVRMHTRQTLAIYDRFGRLMYGQEDVPRDVLEYVVFEKHLANPYGSWR 260
>gi|296115092|ref|ZP_06833734.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter
hansenii ATCC 23769]
gi|295978429|gb|EFG85165.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter
hansenii ATCC 23769]
Length = 325
Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 48/133 (36%), Gaps = 6/133 (4%)
Query: 99 DPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG 158
D + F + + + ++ + + A++ + + F+ L+ S S V
Sbjct: 197 DYQAF----QQALVNVQAAWSQQNLGALQHMATPEMVSYFSHQLTDLASRGARNVVSDVR 252
Query: 159 IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP 218
++ + + E Y T+ + I + D +I V ++WTF R
Sbjct: 253 FENGDLTESWQENGMDYATVAMRYSLIDMTTDMTGHVIDGSSTERTVVTELWTFER--SS 310
Query: 219 SNPNWVLISTKLG 231
W++ + +
Sbjct: 311 RGGTWLVSAIQQV 323
>gi|296532615|ref|ZP_06895317.1| import inner membrane translocase, subunit Tim44 [Roseomonas
cervicalis ATCC 49957]
gi|296267060|gb|EFH12983.1| import inner membrane translocase, subunit Tim44 [Roseomonas
cervicalis ATCC 49957]
Length = 243
Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 7/178 (3%)
Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
R + + G + T D + F
Sbjct: 72 RSRQPAMAGGPREGMGMAREAQPAPRPMMGGGGGAATQPIQVTQADYQAF----EALLRD 127
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I ++ + +L + F L + ++S V ++ + A E +
Sbjct: 128 INAAWSRRDEAGLARLATPEMASYFAQDLRDLDARGWRNETSDVRLEQGDLSEAWREADG 187
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
Y T+ + + +YD ++ DP ++WTF R W L + +
Sbjct: 188 DYATVAMRFSLVDVTYDTQGRVVEGDPATRSTATELWTFRRRRGGP---WQLSAIQQA 242
>gi|117619732|ref|YP_855556.1| import inner membrane translocase, subunit Tim44 [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|117561139|gb|ABK38087.1| import inner membrane translocase, subunit Tim44 [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
Length = 284
Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 17/182 (9%), Positives = 55/182 (30%), Gaps = 15/182 (8%)
Query: 49 YVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR 108
+ + + + + + FD FL AR
Sbjct: 117 KMAAPQQQTAYAGYQPPQSAAPQQFEQNHSAPQATGFADSDVPFRLPPGFDMNGFLAGAR 176
Query: 109 NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS 168
+ Y + +++ + + + + V +++ + + + V D +++ A
Sbjct: 177 DHYRTLQEAWNKNDLEKVREYVSPELFEQLKAERAELTGE----QHTEVMYVDTQLVRAD 232
Query: 169 IEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ +++R + ++ + ++W RN+ N W ++
Sbjct: 233 YGSDWAQVSVRF-----------SGRYMDRQEQVEEDIKEVWHLERNLAKDNAPWHIVGI 281
Query: 229 KL 230
+
Sbjct: 282 EQ 283
>gi|18043288|gb|AAH20130.1| Mitochondrial ribosomal protein L45 [Mus musculus]
Length = 306
Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 53/171 (30%), Gaps = 2/171 (1%)
Query: 56 ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115
K+ L E +R I T+F KDF +A++ +
Sbjct: 90 PPEGDARMSSLSKEGLTQRTERLRKNAASQLAIRKIREFDTNFKTKDFPEKAKDIFIEAH 149
Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENT 173
+ LV + D L + V+S + +
Sbjct: 150 LCLNNSDHDRLHTLVTEHCFPDMVWDLKYKTVRWGFVESLEPAQVVHVRCSGLVNQSNMY 209
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
+T+R+ + A YD+ L+ ++ V++ F R++ +W
Sbjct: 210 GQVTVRLHTRQTLAIYDRFGRLMYGQEDVPKDVLEYVVFERHLMNPYGSWR 260
>gi|13385418|ref|NP_080203.1| 39S ribosomal protein L45, mitochondrial precursor [Mus musculus]
gi|29611870|sp|Q9D0Q7|RM45_MOUSE RecName: Full=39S ribosomal protein L45, mitochondrial;
Short=L45mt; Short=MRP-L45; Flags: Precursor
gi|12847109|dbj|BAB27440.1| unnamed protein product [Mus musculus]
gi|26349471|dbj|BAC38375.1| unnamed protein product [Mus musculus]
gi|74180509|dbj|BAE34190.1| unnamed protein product [Mus musculus]
gi|123209263|emb|CAM26393.1| mitochondrial ribosomal protein L45 [Mus musculus]
gi|123258869|emb|CAM27000.1| mitochondrial ribosomal protein L45 [Mus musculus]
gi|148684129|gb|EDL16076.1| mitochondrial ribosomal protein L45 [Mus musculus]
Length = 306
Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 2/171 (1%)
Query: 56 ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115
K+ L E +R I +F KDF +A++ +
Sbjct: 90 PPEGDARMSSLSKEGLTQRTERLRKNAASQLAIRKIREFDANFKTKDFPEKAKDIFIEAH 149
Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENT 173
+ LV + D L + V+S + +
Sbjct: 150 LCLNNSDHDRLHTLVTEHCFPDMVWDLKYKTVRWGFVESLEPAQVVHVRCSGLVNQSNMY 209
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
+T+R+ + A YD+ L+ ++ V++ F R++ +W
Sbjct: 210 GQVTVRLHTRQTLAIYDRFGRLMYGQEDVPKDVLEYVVFERHLMNPYGSWR 260
>gi|209884542|ref|YP_002288399.1| import inner membrane translocase, subunit Tim44 [Oligotropha
carboxidovorans OM5]
gi|209872738|gb|ACI92534.1| import inner membrane translocase, subunit Tim44 [Oligotropha
carboxidovorans OM5]
Length = 320
Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/224 (11%), Positives = 62/224 (27%), Gaps = 31/224 (13%)
Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
+ +++ + FF+ ++
Sbjct: 125 ASVLGLIVQLALVFFLVRLAMSWWARR----------------------NAPAYADNAPP 162
Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
+ N G T D + F + ++ A++
Sbjct: 163 QANPGQAQNYARTGFGFGAGRNAPPLEITPADYEAF----ERRLSEVQAAWSNEDTAALQ 218
Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
+ + + L+ + K S V + + A E T Y T+ + +
Sbjct: 219 TIATPEMASYLSQDLADNAARGVVNKVSDVKLLQGDLAEAWREGPTDYATVAMRFSLVDK 278
Query: 188 SYDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ D+ ++ + +V +IWTF R + +W L + +
Sbjct: 279 TIDRASGRVVEGS-DTPEEVTEIWTFARR---PDTDWELSAIQQ 318
>gi|302773644|ref|XP_002970239.1| hypothetical protein SELMODRAFT_441105 [Selaginella moellendorffii]
gi|300161755|gb|EFJ28369.1| hypothetical protein SELMODRAFT_441105 [Selaginella moellendorffii]
Length = 257
Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 9/149 (6%)
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
+ + + ++ K F EA + Y+ I G + + +LV + + + R++
Sbjct: 105 LAKLRKKHKGYNQKVFYREATDLYKEINKLSAAGDLGKLRRLVTEHFFSVIKNQIKQRQA 164
Query: 148 NEKNVKSSLVGIDDMK---------IINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
V +VG + I ++ V IT+RI I A+YDK+N +I
Sbjct: 165 AYSRVHWEMVGQIKLMRTLQGRLIGIDRKDLDNAFVQITLRIQSNQIFAAYDKNNNIIKG 224
Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
D E V DIW F +++ + W L
Sbjct: 225 DLEKPLLVEDIWIFEKHLTRPDSTWRLCG 253
>gi|330993425|ref|ZP_08317360.1| hypothetical protein SXCC_03323 [Gluconacetobacter sp. SXCC-1]
gi|329759455|gb|EGG75964.1| hypothetical protein SXCC_03323 [Gluconacetobacter sp. SXCC-1]
Length = 324
Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/218 (16%), Positives = 69/218 (31%), Gaps = 36/218 (16%)
Query: 14 LLFAFITFFVF-LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
L+ + FF+ +R G+ GN
Sbjct: 139 LIQLALVFFIVRWAIRRFSGRAAGN------------------TVSSPFSPGAAPVGGGS 180
Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
+ P+G + D + F + + I ++ + V A++ +
Sbjct: 181 ARGGGQPVGVAITAA-----------DYQAF----QQALINIQTAWSQQNVAAMQHMATP 225
Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
+ FN+ LS S S + + ++ + E Y T+ + I + D
Sbjct: 226 EMVSYFNNQLSELASRGARNVVSDIRFERGDLVESWRENGMDYATVAMQYSMIDITTDMT 285
Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+I DP V ++WTFVR W+L + +
Sbjct: 286 GRVIDGDPANRTTVAELWTFVRAAGT--GTWLLSAIQQ 321
>gi|260830091|ref|XP_002609995.1| hypothetical protein BRAFLDRAFT_247571 [Branchiostoma floridae]
gi|229295357|gb|EEN66005.1| hypothetical protein BRAFLDRAFT_247571 [Branchiostoma floridae]
Length = 257
Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/181 (16%), Positives = 66/181 (36%), Gaps = 8/181 (4%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ ++ D + + T +++V+ +I+ V F + FL +
Sbjct: 67 ESDNVVVRASRLITDKVGDLVGGLFSKTEMSEVLTEIIKVDPSFTKEAFLKQCETDIIPN 126
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQD-----FNDSLSTRKSNEKNVKSSLVGIDDMKIINAS 168
I+++ G + ++ V + S K+ + S ++ ID++ +
Sbjct: 127 ILEAMIRGDLEILKDWCFEAVSNHDQKLHASSCQSQGKALGCHFDSKILDIDNLDLATGK 186
Query: 169 IEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLI 226
+ E + I Q I + + DP KVI +W R+ +P +W L+
Sbjct: 187 VMEQGPVLVISFTAQQIMVVRNAKGEVTEGDPNKVLKVIYVWALCRDQEEFDPRASWKLM 246
Query: 227 S 227
Sbjct: 247 D 247
>gi|17987012|ref|NP_539646.1| transporter [Brucella melitensis bv. 1 str. 16M]
gi|17982665|gb|AAL51910.1| transporter [Brucella melitensis bv. 1 str. 16M]
Length = 197
Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/200 (14%), Positives = 54/200 (27%), Gaps = 8/200 (4%)
Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93
+ +G + + + + F V+ D
Sbjct: 5 RRQTAAAGAGHAGAQPFGASQPFGSAKSASGQGSFSGRTPSVNPFETKQAAAPVVEDEPM 64
Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153
D F I + A+ KL + L S K +
Sbjct: 65 DVGQEDLDRF----EQMLVDIQGGYGREDYAALRKLTTPEAMSYLAEELGEIASGGKRNE 120
Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTF 212
V + + A E N Y T+ + I D+ ++ +P + +++WTF
Sbjct: 121 VKDVKLLQGDVSEAWREGNVEYATVAMRYSAIDVMVDRTSGAVVEGNPNEPVESVELWTF 180
Query: 213 VRNIPPSNPNWVLISTKLGE 232
R W L + + E
Sbjct: 181 TR---TDGGAWQLAAIQGTE 197
>gi|12847837|dbj|BAB27727.1| unnamed protein product [Mus musculus]
Length = 284
Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 2/171 (1%)
Query: 56 ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115
K+ L E +R I +F KDF +A++ +
Sbjct: 95 PPEGDARMSSLSKEGLTQRTERLRKNAASQLAIRKIREFEANFKTKDFPEKAKDIFIEAH 154
Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENT 173
+ LV + D L + V+S + +
Sbjct: 155 LCLNNSDHDRLHTLVTEHCFPDMVWDLKYKTVRWGFVESLEPAQVVHVRCSGLVNQSNMY 214
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
+T+R+ + A YD+ L+ ++ V++ F R++ +W
Sbjct: 215 GQVTVRLHTRQTLAIYDRFGRLMYGQEDVPKDVLEYVVFERHLMNPYGSWR 265
>gi|168047419|ref|XP_001776168.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672543|gb|EDQ59079.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 354
Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/190 (17%), Positives = 58/190 (30%), Gaps = 6/190 (3%)
Query: 48 KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107
K D R + +NE T MR+I F DFL E
Sbjct: 159 KGQELAEDIRERWETSDSPVVHRIQDLNESIFGETATAVAMREIRRHDPSFTFSDFLAEV 218
Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167
+ + ++ +G + K V + +S + + ++ I D++I
Sbjct: 219 QEEIRPTLRAYLKGDFATLRKKCSREVVERCQAERRALESQGIFLDNEILHISDVEIKET 278
Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTF------VRNIPPSNP 221
+ N I I Q I + +KD +I + V W N +
Sbjct: 279 KLLGNAPIIIINFQTQQIHCARNKDGNIIEGARDDIHTVFYAWAMQQESPEETNRGEFHT 338
Query: 222 NWVLISTKLG 231
W L +
Sbjct: 339 RWKLREMQQA 348
>gi|302790822|ref|XP_002977178.1| hypothetical protein SELMODRAFT_176052 [Selaginella moellendorffii]
gi|300155154|gb|EFJ21787.1| hypothetical protein SELMODRAFT_176052 [Selaginella moellendorffii]
Length = 432
Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 52/157 (33%), Gaps = 6/157 (3%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
T ++I S F DF+ E + I+ ++ +G + K V V +
Sbjct: 269 GETATAAAFKEIRSRDPTFSFPDFVLEVQEDIRPILTAYLKGDYDTLRKKVCKEVVERCR 328
Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199
+S V + ++ I ++++ + + N I I Q D+ +
Sbjct: 329 AEHRALQSQGLYVDTKILYISELEVRESKLIGNEPVIIISFQTQQNYCVRDEFGHIREGS 388
Query: 200 PEIFGKVIDIWTFVR------NIPPSNPNWVLISTKL 230
+ ++ W + + P W L +
Sbjct: 389 KDDIRTILYAWAMQQVSLDEMDPDEFTPRWRLREMQQ 425
>gi|118785408|ref|XP_314650.3| AGAP008539-PA [Anopheles gambiae str. PEST]
gi|116127723|gb|EAA10193.3| AGAP008539-PA [Anopheles gambiae str. PEST]
Length = 418
Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 57/178 (32%), Gaps = 4/178 (2%)
Query: 52 SKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNS- 110
+ + D + + T L+ + ++ + F+ K FL
Sbjct: 229 QYDESENVAIRTSRALTDKVSQVMGNLFSKTELSAALTEVCRIDPSFEAKQFLQFCERHV 288
Query: 111 YEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE 170
+++S G++ + Y + +S L+ I+++++ +
Sbjct: 289 IPNVLESILRGELDVLRDWCFESAYSVIATPIVQGLEAGCRFESKLLDIENVELAMGQVM 348
Query: 171 ENTVYITIRIVGQFISASYDKDN-LLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVL 225
E + + Q I + +I DPE + W R+ NP W +
Sbjct: 349 EQGPVLIVTFQAQQIVCVREGTGAAVIEGDPEKVFRCHHAWVLCRDPSELNPQAAWRI 406
>gi|260459996|ref|ZP_05808249.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
opportunistum WSM2075]
gi|259034207|gb|EEW35465.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
opportunistum WSM2075]
Length = 326
Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/224 (12%), Positives = 68/224 (30%), Gaps = 16/224 (7%)
Query: 10 DFLILLFAF-ITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK 68
F LL A I + L +R ++ + + + +G S+ + R
Sbjct: 117 MFGFLLQALLIGGAIMLAIRFF---RSQSARGPALAGAGNAQASRFENRATSPQQSAGSF 173
Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
D + L+ + + ++F A+ +
Sbjct: 174 TIPDFGGGSGGGSPAGGSDEITLAQSD--------LDAFQQLLTDVQEAFGREDHAALRR 225
Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
+ ++ L+ + S + + I + E++ Y T + +
Sbjct: 226 ATTPEMVSYLSEELADNAQKGLRNEVSDITLLQADIAESWREDDRDYATAALRYESRDVM 285
Query: 189 YDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
++ + D + + ++WTF+R NW L + +
Sbjct: 286 RERASGKAVEGDDDHPTETTELWTFMRENGS---NWKLSAIQQA 326
>gi|255086703|ref|XP_002509318.1| mitochondrial protein translocase family [Micromonas sp. RCC299]
gi|226524596|gb|ACO70576.1| mitochondrial protein translocase family [Micromonas sp. RCC299]
Length = 415
Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/211 (15%), Positives = 71/211 (33%), Gaps = 16/211 (7%)
Query: 29 GVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVM 88
V K G ++ + + + R+ T D F T +
Sbjct: 198 SVFSKLEGLKQTPAYKKGEEMLEDARERW--ETSDNPMVHRIQDITEGAFFAETEQAEAY 255
Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL-VDSRVYQDFNDSLSTRKS 147
R + DF+ F+ E R ++ ++ +G V A+E+ V + + + +
Sbjct: 256 RVLQQRVPDFNMNGFIAEVRRDVPKVLGAYLKGDVEALERCAVSKEMLERMGGQMKLWQH 315
Query: 148 NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
+ V ++ + +M+++ +N I ++ Q I+ +KD ++ + V
Sbjct: 316 EGQFVDPRILHLSEMELVEVRTLDNAPMIVLQFSCQQINCVRNKDGEIVEGAEDDIQSVH 375
Query: 208 DIWTFV-----------RNIPPSNPNWVLIS 227
+W R P W L
Sbjct: 376 YLWAMQLEDVEYTHSDGRKYTA--PTWQLRE 404
>gi|87122174|ref|ZP_01078057.1| hypothetical protein MED121_05298 [Marinomonas sp. MED121]
gi|86162494|gb|EAQ63776.1| hypothetical protein MED121_05298 [Marinomonas sp. MED121]
Length = 281
Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/224 (13%), Positives = 66/224 (29%), Gaps = 39/224 (17%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
ILLFA + F+ + + + ++ + +
Sbjct: 95 GFAFGDILLFALV-GFLIYKF----------------------FIAPKRQQAAANNAQFR 131
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ DS + K + + DF+ F+ EA+N Y A+ ++ E I
Sbjct: 132 QMPGADSFQQAPNASANPFKAQDPAMQLPPDFNQAAFVAEAKNHYTALQKAWDENDFTEI 191
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
V + R + + + V D+++ + G S
Sbjct: 192 ADYVTPELLAMLQA---ERANYGADKPKTEVISLDVEL-----------VRGEFQGSISS 237
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ + E + W +N+ + NW ++ +
Sbjct: 238 ITLKFSGWIKEG--EDTSDSTEYWHLEKNMSQQSSNWTIVGIQQ 279
>gi|115523579|ref|YP_780490.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
palustris BisA53]
gi|115517526|gb|ABJ05510.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
palustris BisA53]
Length = 329
Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/184 (12%), Positives = 52/184 (28%), Gaps = 8/184 (4%)
Query: 48 KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107
+ + + G + + D + F
Sbjct: 154 QRRNANANAAAYAGPASGPEIGPGPQASHRNAASGFGFGGASPAPLEIGPADYEAF---- 209
Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167
I +++ +G + + L + F L K+ K S V + + +
Sbjct: 210 ERLLGEIQETWSKGDIGHLHMLATPEMVSYFTSDLDANKARGVVNKVSDVKLLQGDLAES 269
Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
E T Y T+ + + + D ++ + + ++WTF R W L +
Sbjct: 270 WREGETDYATVAMRFSLVDKTTDASGAIVEGS-DQPIEATEVWTFARRQGSD---WELSA 325
Query: 228 TKLG 231
+
Sbjct: 326 IQQV 329
>gi|323529253|ref|YP_004231405.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
CCGE1001]
gi|323386255|gb|ADX58345.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
CCGE1001]
Length = 322
Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/228 (10%), Positives = 66/228 (28%), Gaps = 22/228 (9%)
Query: 5 KMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK 64
+M S LI L +F R + ++ +P + G S+ + +
Sbjct: 116 QMLSNLLLIGLVVMAGVMLF---RFIANRR----RPDLAYGHGAANRSQGNGSPFLNQTG 168
Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
+ D+ + D + + A++ + + ++ +
Sbjct: 169 HARSDSHFFGTQRAATNPAGAAGAFSAPVQPLGVDQAELVVSAKSLFMRLQAAWDRNEQG 228
Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
+ +L + F + + V + +++ + ++++R
Sbjct: 229 DLFELTTPEM---FAQLKRDLEDRGSQPNRTEVPQLEAEVLGVQSTADETFVSVRFY--- 282
Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ D ++W VR+ + W L + +
Sbjct: 283 --------GQMREDDAPTAQPFQEVWNMVRSARGGDA-WRLAGIQQLD 321
>gi|254504893|ref|ZP_05117044.1| Tim44-like domain family [Labrenzia alexandrii DFL-11]
gi|222440964|gb|EEE47643.1| Tim44-like domain family [Labrenzia alexandrii DFL-11]
Length = 335
Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/218 (13%), Positives = 65/218 (29%), Gaps = 20/218 (9%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
+++ F + R +G F + + +
Sbjct: 134 LIVLLVSLAMRFFRSR------------QQPATAGPNPFERAPNQPAPDQNASQATPFSF 181
Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
++ T D F + + ++ A+ +L
Sbjct: 182 GGGGASGSTSQTFDQPATQPYEATAADLDRF----EDMLSEVQSAYASEDYAALRQLATP 237
Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
+ L S K S V + + + E Y+T+ + + +D
Sbjct: 238 EAMSYLAEELGELASAGKKNVVSDVKLLQGDVAESWNENGNDYVTVAMRYSAVDYIAKRD 297
Query: 193 N-LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
+ +IS DP+ + ++WTFVR S +W+L + +
Sbjct: 298 SHEVISGDPDAPSESTEVWTFVR---SSGGDWLLSAIQ 332
>gi|297827085|ref|XP_002881425.1| attim44-2 [Arabidopsis lyrata subsp. lyrata]
gi|297327264|gb|EFH57684.1| attim44-2 [Arabidopsis lyrata subsp. lyrata]
Length = 469
Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/193 (13%), Positives = 57/193 (29%), Gaps = 6/193 (3%)
Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100
S K D + +NE T ++I F
Sbjct: 267 MSEPVVNKSQEIAEDVMEKWETSDNPIVHKIQDMNEKIFEETGSASTYKEIRRRDPSFSL 326
Query: 101 KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160
DF E + + +++++ +G ++K + + +S+ L+ +
Sbjct: 327 PDFAVEIQEAIRPVLNAYSKGDAETLKKYCSKELIERCTAEHRAFQSHGYFFDHKLLHVS 386
Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS- 219
+++I + + I +R Q I D++ + + V W +
Sbjct: 387 EVEIKETKMMGTSPVIIVRFQTQEIFCVRDQNGNIKEGGQDTIHTVYYDWAMQQVEAAEL 446
Query: 220 -----NPNWVLIS 227
P W L
Sbjct: 447 GEDAIYPIWRLRE 459
>gi|157131210|ref|XP_001655824.1| mitochondrial ribosomal protein, L45, putative [Aedes aegypti]
gi|108871608|gb|EAT35833.1| mitochondrial ribosomal protein, L45, putative [Aedes aegypti]
Length = 334
Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 75/200 (37%), Gaps = 3/200 (1%)
Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87
RG+L + E+PF +G VF K+ EL T+
Sbjct: 84 RGILPPRPWMERPFYISCTG-GVFEPYVPPEGDGKMSAVSKEGAKQKFELLEKKTKSMMA 142
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
+R I S DF+P +F +A+ Y + E + + +++ R Y + +++ +
Sbjct: 143 VRKIRSFDDDFEPPEFAAQAQEIYIQAHNLLMEKNKYKLREIITERAYPEMMHNVTDKTI 202
Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
K +KS + S + +T+R Q I A YD+ L+ +
Sbjct: 203 RWKFLKSLEPPRVVHARCTDVISKDNIFGQVTVRFHTQQILAIYDRFGRLMHGSEIVEKD 262
Query: 206 VIDIWTFVRNIPPSNPNWVL 225
++ F +++ W L
Sbjct: 263 CLEYVVFEKHLSNEYGVWRL 282
>gi|258405234|ref|YP_003197976.1| import inner membrane translocase subunit Tim44 [Desulfohalobium
retbaense DSM 5692]
gi|257797461|gb|ACV68398.1| import inner membrane translocase subunit Tim44 [Desulfohalobium
retbaense DSM 5692]
Length = 298
Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/210 (13%), Positives = 70/210 (33%), Gaps = 25/210 (11%)
Query: 21 FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPI 80
F ++L G + P S + S D + +
Sbjct: 109 VFFVVRLFKGRGTR----GPSSKSPPRQDQRSAPDRFDT-------AAAGWEHLRSKPAG 157
Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
G + + S+ DFD ++FL A+ Y+ + +++ + + I V+++
Sbjct: 158 GPPPPEPTDEEESIPQDFDTQEFLKGAKIVYQRLQEAWDDRDLEDIRGFTTPEVFREIRR 217
Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
+ N + + + ++ N + ++++ + D
Sbjct: 218 QAKE----DPNTSQTEIVLLQAEVRNVRRDGAVTHVSVAFEALLRESPQD---------- 263
Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+V ++W F R+ S+ +W+L +
Sbjct: 264 SETRQVRELWHFQRDESRSDSHWLLEGLEQ 293
>gi|91206049|ref|YP_538404.1| hypothetical protein RBE_1234 [Rickettsia bellii RML369-C]
gi|157826585|ref|YP_001495649.1| hypothetical protein A1I_01080 [Rickettsia bellii OSU 85-389]
gi|91069593|gb|ABE05315.1| unknown [Rickettsia bellii RML369-C]
gi|157801889|gb|ABV78612.1| hypothetical protein A1I_01080 [Rickettsia bellii OSU 85-389]
Length = 211
Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 25/229 (10%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M +L+FA I FF+ +L LG + ++ + G+ V + +
Sbjct: 1 MSPQIIELLIFAGIAFFIINKLITTLGATSDDDPAKQKSYFGEPVIKDVTHSSNKSYEEE 60
Query: 66 KKKDNLDSINE-----LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
K I + T + M + F P F+N A+ +++ I+++ ++
Sbjct: 61 KDLPTAQDIKTFKNLIVEQNITAVVDGMETVHKRLNAFQPIKFINNAKIAFQMIIEAAYK 120
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
+ + +LVD R ++F + + K N ++I +
Sbjct: 121 NQTEELAELVDKRFLEEFEKISDSYG------NFFDSTALNAKYSEIYTFGNNIFIKLLF 174
Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
G+ + + ++ + WTF RN +W L + +
Sbjct: 175 QGKNVV--------------DKIEELKEEWTFTRNANTKEVDWFLSNIE 209
>gi|145300179|ref|YP_001143020.1| import inner membrane translocase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142852951|gb|ABO91272.1| predicted import inner membrane translocase [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 280
Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/187 (9%), Positives = 53/187 (28%), Gaps = 15/187 (8%)
Query: 44 FFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDF 103
K + + + FD F
Sbjct: 108 RAMRKSKAPSPQPQTAYAGYQPPSATPQQFEQSSSASQATGFADSDVPFRLPPGFDMNSF 167
Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163
L+ AR+ Y + +++ + + + V +++ + + + V D +
Sbjct: 168 LSGARDHYRTLQEAWNTNDLEKVREYVSPELFEQLKAERAELTGE----QHTEVMYVDTQ 223
Query: 164 IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223
++ A + +++R + ++ + ++W RN+ N W
Sbjct: 224 LVRADYGSDWAQVSVRF-----------SGRYMDRQEQVEEDIKEVWHLERNLAKDNAPW 272
Query: 224 VLISTKL 230
++ +
Sbjct: 273 HIVGIEQ 279
>gi|316958066|gb|EFV47264.1| conserved hypothetical protein [Trichinella spiralis]
Length = 168
Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 55/148 (37%), Gaps = 3/148 (2%)
Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
+++V+ +I + +FD DF + + + ++++ G+ + +
Sbjct: 11 SVSEVLTEICKIDPNFDVTDFRKQCQRDFIPNVIEASNRGEEEILRDWCSEGAFNQLIAL 70
Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201
LS K L ID+++II I + + + + + D + +
Sbjct: 71 LSECKRAGYKHTFRLFDIDNVEIITGKITDMGPVLLVAFQTRQLRCIQTPDGKFVFGTTD 130
Query: 202 IFGKVIDIWTFVRNIPPSN--PNWVLIS 227
+ +W F R++ N W ++
Sbjct: 131 DPLLITHLWAFCRDVDEPNSKAAWRVVD 158
>gi|170699198|ref|ZP_02890251.1| import inner membrane translocase subunit Tim44 [Burkholderia
ambifaria IOP40-10]
gi|170135923|gb|EDT04198.1| import inner membrane translocase subunit Tim44 [Burkholderia
ambifaria IOP40-10]
Length = 218
Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/234 (13%), Positives = 67/234 (28%), Gaps = 29/234 (12%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M + +I L A I ++ R + ++ E +S S S G
Sbjct: 1 MMANVIVIALLAMIGIWLV---RKFMNRRRSQEPAYSVGGSASSSGSYSQSPSFQQGSTG 57
Query: 66 KKKDNLDSINELFPIG---------TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116
S G + + V FD + FL A+ + +
Sbjct: 58 NNYAGSGSSYANEAQGVFGGGAAAAGAAGAMAGAPLQVPAGFDTEAFLRSAKVYFVRLQA 117
Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
++ +G + I + + F + S + + V D +++
Sbjct: 118 AWDQGNLADIREFTTPEM---FAEIKIDLDSRGNDANQTDVVQLDAELVAIEDRGIEQSA 174
Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++R L+ S + ++W + + W+L +
Sbjct: 175 SVRFH-----------GLIRESANAPAAPLDEVWNLSK---SGSQGWLLAGIQQ 214
>gi|302793266|ref|XP_002978398.1| hypothetical protein SELMODRAFT_418250 [Selaginella moellendorffii]
gi|300153747|gb|EFJ20384.1| hypothetical protein SELMODRAFT_418250 [Selaginella moellendorffii]
Length = 260
Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 9/149 (6%)
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
+ + + ++ K F EA + Y+ I G + + +LV + + + R++
Sbjct: 108 LAKLRKKHKGYNQKVFYREATDLYKEINKLSAAGDLGKLRRLVTEHFFSVIKNQIKQRQA 167
Query: 148 NEKNVKSSLVGIDDMK---------IINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
V +VG + I ++ V IT+RI I A+YDK+N +I
Sbjct: 168 AYSRVHWEMVGQIKLMRTLQGRLIGIDRKDLDNAFVQITLRIQSNQIFAAYDKNNNIIKG 227
Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
D E V DIW F +++ + W L
Sbjct: 228 DLEKPLLVEDIWIFEKHLTRPDSTWRLCG 256
>gi|241258750|ref|YP_002978634.1| import inner membrane translocase subunit Tim44 [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240863220|gb|ACS60883.1| import inner membrane translocase subunit Tim44 [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 331
Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/218 (16%), Positives = 65/218 (29%), Gaps = 20/218 (9%)
Query: 16 FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
A I V L +R ++ + S + + I T+G G N
Sbjct: 129 IALIGGAVMLAMRYFANRRQPSYGVGGQSRSYNMSPTNKSSFQIPTIGSGGGFGGQSRGN 188
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
L++ + ++ + +L
Sbjct: 189 RPSDEIGLAQAD----------------LDQFEELLTQVQTAYGAEDYGTLRRLTTLEAM 232
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NL 194
+ L +N + S V + I A E+ Y T+ + I A ++D
Sbjct: 233 SYLAEELGENATNGVRNRVSDVKLLQGDIAEAWREDGQEYATLAMRYSSIDAMVERDSGR 292
Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
++S D + ++WTFVR W L + + E
Sbjct: 293 VVSGDDRRPSESTEVWTFVRKSGAD---WKLAAIQGAE 327
>gi|83320119|ref|NP_001030272.1| 39S ribosomal protein L45, mitochondrial precursor [Bos taurus]
gi|88932615|sp|Q3T142|RM45_BOVIN RecName: Full=39S ribosomal protein L45, mitochondrial;
Short=L45mt; Short=MRP-L45; Flags: Precursor
gi|74267993|gb|AAI02137.1| Mitochondrial ribosomal protein L45 [Bos taurus]
Length = 306
Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 53/171 (30%), Gaps = 2/171 (1%)
Query: 56 ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115
K+ L E +R I +F KDF +A++ +
Sbjct: 90 PPEGDARVSSLSKEGLAQRTERLKKNVASQLSIRRIKESDPNFKVKDFPEKAQDIFIEAH 149
Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENT 173
+ LV + D + + + V+S + +
Sbjct: 150 LCLNNSDHDRLHTLVTENCFPDMVWDIKYKTVSWSFVESLEPPQVVQVRCSSLVTKSNTY 209
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
+T+R+ + A YD+ L+ ++ V++ F +++ +W
Sbjct: 210 GQVTVRMHTRQTLAIYDRFGRLMYGQEDVPRDVLEYVVFEKHLANPYGSWR 260
>gi|182677331|ref|YP_001831477.1| import inner membrane translocase subunit Tim44 [Beijerinckia
indica subsp. indica ATCC 9039]
gi|182633214|gb|ACB93988.1| import inner membrane translocase subunit Tim44 [Beijerinckia
indica subsp. indica ATCC 9039]
Length = 321
Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 63/221 (28%), Gaps = 21/221 (9%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
L +FL + V+G ++P +G G
Sbjct: 119 MSFLGLLVQIGLLFLLFKLVMGFLRNRQQPAYQGADQGGQAPGNQPQGGNFGFGGGPGPG 178
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+N+ D F AI SF ++ + L
Sbjct: 179 RAGVNDQPLPIETA--------------DYTAF----EQKLAAIQSSFSNEDLNGLRLLT 220
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS-ASY 189
+ F + ++ + K S V + + A E N Y T+ +
Sbjct: 221 TPEMASYFAEEIAGNATKGFVNKISDVKLLQGDVAEAWREANGEYATVAMRFSLTDRMIE 280
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++S +V +IWTF R + + +W L + +
Sbjct: 281 RASGRIVSGG--TPEQVTEIWTFFRPLGATPADWKLAAIQQ 319
>gi|169632671|ref|YP_001706407.1| hypothetical protein ABSDF0845 [Acinetobacter baumannii SDF]
gi|169151463|emb|CAP00212.1| conserved hypothetical protein; putative exported protein
[Acinetobacter baumannii]
Length = 326
Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/221 (14%), Positives = 67/221 (30%), Gaps = 20/221 (9%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
+LL A +TFFVF +L KK P++ G+ F + G
Sbjct: 126 LWVLLAAAVTFFVFRKLGS--KKKLAANNPYAPNNGGQNPFGRSAAPT--NTGDNTNIFG 181
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+ + +P FL AR + I + I + +
Sbjct: 182 QSVGGGAATQAPFGSATTNSGNQLPDGSEPASFLRVARQRFNHIQSINSASNIEEIRRYL 241
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
+Y + + + + + +++++ E +++R
Sbjct: 242 TPELYNSMYNDIMENQDQ----DVAEFSNLNAMVVDSATENGQYIVSVRF---------- 287
Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ + +IW FV+ + +WV+ +
Sbjct: 288 -TGTVSEDLNSLPQPFTEIWHFVKPVGSQQ-DWVVAGIQQA 326
>gi|262376593|ref|ZP_06069821.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
gi|262308303|gb|EEY89438.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
Length = 327
Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/231 (13%), Positives = 67/231 (29%), Gaps = 30/231 (12%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
ILL A + FF+F R + KK PF+ G
Sbjct: 115 IWILLAAAVAFFIF---RKMSAKKKVASNPFAPNSGAGNTAPFGQAPTAPRGGDSTNIFG 171
Query: 71 LDSINELFPIGTRLNKVMRDIV-----------SVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ + L + + +P FL AR + I
Sbjct: 172 QNVGGQTSSNNAPLGSAPVNNAPFGAAYTQSGSQLPDGTEPAAFLRVARQRFNHIQSMNT 231
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
+ I++ + +YQ + + + + + + ++++S + +++R
Sbjct: 232 ASNISEIQRYLTPELYQSMYNDIMSNQDQ----DVAEFSNLNAMVVDSSTDNGQYIVSVR 287
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ + +IW F + N +WV+ +
Sbjct: 288 F-----------TGTVSEDLNSLPQPFAEIWHFTKPAGS-NQDWVVAGIQQ 326
>gi|168020464|ref|XP_001762763.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686171|gb|EDQ72562.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 428
Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/214 (18%), Positives = 68/214 (31%), Gaps = 16/214 (7%)
Query: 24 FLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83
F + + V TG+ K D R + +NE T
Sbjct: 219 FKRFKTV----TGH------PVVTKGQELAEDIRERWETSDSPVVHRIQDMNESLFGETA 268
Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
MR+I F DFL E + + ++ +G V ++K V + S
Sbjct: 269 TAVAMREIRRHDPSFTFSDFLAEMQEEIRPTLRAYLKGDVPTLKKKCCREVLERCQAERS 328
Query: 144 TRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203
+S + + ++ I D++I + N+ I I Q I + DK +I +
Sbjct: 329 ALESQGIFLSNEILHISDIEIKETKLLGNSPIIIINFQTQQIHCARDKAGNIIEGARDDI 388
Query: 204 GKVIDIWTFVRNIPPSNP------NWVLISTKLG 231
V W + P W L +
Sbjct: 389 HTVFYAWAMQQESPEETSHGEFQTRWKLREMQQA 422
>gi|330818295|ref|YP_004362000.1| hypothetical protein bgla_1g34410 [Burkholderia gladioli BSR3]
gi|327370688|gb|AEA62044.1| hypothetical protein bgla_1g34410 [Burkholderia gladioli BSR3]
Length = 353
Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/245 (13%), Positives = 71/245 (28%), Gaps = 35/245 (14%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGK-----------------KTGNEKPFSGFF 45
F M + +I L AFI ++ +L K + G + +G +
Sbjct: 123 FASMMANVIVIALLAFIGIWIVRKLMNRNRKPEPAYAGAGSSPGSSMNRGGYDAGSNGGY 182
Query: 46 SGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLN 105
+ + + + G L SV FD + F+
Sbjct: 183 ASQNQAYAPAPSQPASSSSYAN-EAAGVFGGAAAAGAGLAAAGTAPSSVPAGFDSEAFVR 241
Query: 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165
A+ + + ++ EG + I + + F + S + + V + +++
Sbjct: 242 NAKVYFIRLQAAWDEGNMTDIREFTTPEM---FAEVKVDLASRGADKNQTDVVQLEAELL 298
Query: 166 NASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
N ++R L+ + ++W + N W+L
Sbjct: 299 GVEERGNQYEASVRFH-----------GLIREAPGASAEPFEEVWNLTK---AGNEGWLL 344
Query: 226 ISTKL 230
+
Sbjct: 345 AGIQQ 349
>gi|301762886|ref|XP_002916855.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like
[Ailuropoda melanoleuca]
Length = 324
Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 2/139 (1%)
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
+R I +F KDF +A++ + + + LV + D ++ +
Sbjct: 145 IRKIREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHNRLHTLVTENCFPDMVWDITYKTV 204
Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
++S + S +T+R+ + A YD+ L+ ++
Sbjct: 205 RWSFIESLEPPQVVQVRCSSMLSQGNIYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPKD 264
Query: 206 VIDIWTFVRNIPPSNPNWV 224
V++ F +++ +W
Sbjct: 265 VLEYVVFEKHLVNPYGSWR 283
>gi|308809217|ref|XP_003081918.1| mitochondrial import inner membrane translocase subunit TIM44,
putative (ISS) [Ostreococcus tauri]
gi|116060385|emb|CAL55721.1| mitochondrial import inner membrane translocase subunit TIM44,
putative (ISS) [Ostreococcus tauri]
Length = 182
Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 62/158 (39%), Gaps = 10/158 (6%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL-VDSRVYQDF 138
T + R I S F+ DF+ E R ++ ++ G V A+++ + + +
Sbjct: 14 TETEQAEAYRLIRSRDPMFNTNDFIAEVRRDIPKVLGAYLRGDVDALKETNISKEMLERL 73
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
+ ++ K+ + V ++ + +++++ + EN + + Q I+ DK ++
Sbjct: 74 SGQMNLWKAEGQFVDPRILDLSEVELMEVRMMENEPLVVLTFSCQQINCVRDKSGKIVEG 133
Query: 199 DPEIFGKVIDIW-------TFVRNIPPSN--PNWVLIS 227
+ V +W F + P WVL
Sbjct: 134 GEDDIQSVHYLWAMQLVDTKFTTDDGREYMKPTWVLRE 171
>gi|327275540|ref|XP_003222531.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like [Anolis
carolinensis]
Length = 316
Score = 83.1 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 53/161 (32%), Gaps = 2/161 (1%)
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
K+ L + +R I DF K F +A++ + ++ +
Sbjct: 113 SKEGLKQRAQQVKQTAASQLAIRKIKDYDPDFSTKTFAEKAQDIFIEAHNNLTNFNKEKM 172
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQF 184
LV + D + ++S + S + +T+R+ +
Sbjct: 173 HALVTEYCFPDMVRGNRYKTIRWSFLESLEPPRVVQVRCPTMVSKDNLYGQVTVRMHSRQ 232
Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
A YD+ L+ +I V++ F R++ W L
Sbjct: 233 TLAIYDRFGRLMYGGEQIPKDVLEYLVFERHLVNPYGQWRL 273
>gi|190894520|ref|YP_001984813.1| putative import inner membrane translocase, TIM family [Rhizobium
etli CIAT 652]
gi|190700181|gb|ACE94263.1| putative import inner membrane translocase protein, TIM family
[Rhizobium etli CIAT 652]
Length = 333
Score = 82.7 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/215 (15%), Positives = 63/215 (29%), Gaps = 20/215 (9%)
Query: 16 FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
A I + L +R ++ + S + I +G G N
Sbjct: 131 IALIGGAIMLAMRYFANRRQPSYGAGGQSRSYSMSPTNNASFQIPAIGSGAGFGGQSRGN 190
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
L++ + ++ + +L
Sbjct: 191 RPSDEIGLAQAD----------------LDQFEELLTNVQTAYGAEDYGTLRRLTTPEAM 234
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NL 194
+ L +N + S V + I A E+ Y T+ + I A ++D
Sbjct: 235 SYLAEELGENATNGVRNRVSDVKLLQGDIAEAWREDGQEYATLAMRYSSIDAMVERDSGR 294
Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
++S D + +IWTFVR +W L + +
Sbjct: 295 VVSGDDRRPSESTEIWTFVRK---PGGDWKLAAIQ 326
>gi|157964519|ref|YP_001499343.1| hypothetical protein RMA_0619 [Rickettsia massiliae MTU5]
gi|157844295|gb|ABV84796.1| hypothetical protein RMA_0619 [Rickettsia massiliae MTU5]
Length = 211
Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 25/229 (10%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
M +L+FA ITF++ +L LG + E+ + G+ + + + +
Sbjct: 1 MSPQIIELLIFAVITFYIINKLITTLGSTSEEEQTNQKSYFGEPIIKDVTYSTVKSNKEE 60
Query: 66 KKKDNLDSINE-----LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
K I + T + M + FDP F+N A+ +++ I+++ ++
Sbjct: 61 KNIPTTQDIKAFKDIIVEHNITAVVDGMEQVHKRLYSFDPVKFINNAKTAFQMIIEAAYK 120
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
+ +L+D R +F + K + N ++I +
Sbjct: 121 KDAKELSELIDKRYLAEFEKITPSYG------DFFDSSALSAKYSEIYMFGNNIFIKLLF 174
Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
G+ + + + + WTF RN +W L + +
Sbjct: 175 QGKNVV--------------DKIEDLKEEWTFTRNANTKEVDWFLSNIE 209
>gi|225712958|gb|ACO12325.1| Probable 39S ribosomal protein L45, mitochondrial precursor
[Lepeophtheirus salmonis]
Length = 340
Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/205 (18%), Positives = 65/205 (31%), Gaps = 3/205 (1%)
Query: 24 FLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83
F + G+L E S S + K+ +
Sbjct: 80 FYKTMGILPPTNEKEVKMSYIGSTGALIDTYVPTEGDGKASILSKEGAKEGLTKGTGKGK 139
Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS-FFEGKVHAIEKLVDSRVYQDFNDSL 142
R I S DFD K FL +A+ Y S G+ + K V + Y + ++
Sbjct: 140 SFLAARKIRSYEDDFDQKTFLLQAQEIYIKAHKSLVENGEDECLLKYVTEKAYPEMVHNV 199
Query: 143 STRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
+ + +KS + + +T+R Q A YD+ LI
Sbjct: 200 RRKTLRWEFIKSLEPPTIVHIRTQDLLQKQNKFAQVTVRFHTQQTLAVYDRFGRLIHGSE 259
Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225
+ V++ F R++ +W L
Sbjct: 260 VVAKDVLEYVVFERHLASIYGSWRL 284
>gi|290562045|gb|ADD38419.1| Probable 39S ribosomal protein L45, mitochondrial [Lepeophtheirus
salmonis]
Length = 340
Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/205 (18%), Positives = 66/205 (32%), Gaps = 3/205 (1%)
Query: 24 FLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83
F ++ G+L E S S + K+ +
Sbjct: 80 FYKIMGILPPTNEKEVKMSYIGSTGALIDTYVPTEGDGKASILSKEGAKEGLTKGTGKGK 139
Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS-FFEGKVHAIEKLVDSRVYQDFNDSL 142
R I S DFD K FL +A+ Y S G+ + K V + Y + ++
Sbjct: 140 SFLAARKIRSYEDDFDQKTFLLQAQEIYIKAHKSLVENGEDECLLKYVTEKAYPEMVHNV 199
Query: 143 STRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
+ + +KS + + +T+R Q A YD+ LI
Sbjct: 200 RRKTLRWEFIKSLEPPTIVHIRTQDLLQKQNKFAQVTVRFHTQQTLAVYDRFGRLIHGSE 259
Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225
+ V++ F R++ +W L
Sbjct: 260 VVAKDVLEYVVFERHLASIYESWRL 284
>gi|116249720|ref|YP_765558.1| putative transmembrane TIM family protein [Rhizobium leguminosarum
bv. viciae 3841]
gi|115254368|emb|CAK03999.1| putative transmembrane TIM family protein [Rhizobium leguminosarum
bv. viciae 3841]
Length = 331
Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 35/218 (16%), Positives = 63/218 (28%), Gaps = 20/218 (9%)
Query: 16 FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
A I V L +R ++ + S + I T+G G N
Sbjct: 129 IALIGGAVMLAMRYFANRRQPSYGVGGQSRSYNMSPTSNSSFQIPTIGSGGGFGGQSRGN 188
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
L++ + ++ + +L
Sbjct: 189 RPSDEIGLAQAD----------------LDQFEELLTQVQTAYGAEDYGTLRRLTTPEAM 232
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NL 194
+ L +N S V + I A E+ Y T+ + I A ++D
Sbjct: 233 SYLAEELGENATNGVRNSVSDVKLLQGDIAEAWREDGQEYATLAMRYSSIDAMVERDSGR 292
Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
++S D + ++WTFVR W L + + E
Sbjct: 293 VVSGDDRRPSESTEVWTFVRKSGAD---WKLAAIQGAE 327
>gi|281344359|gb|EFB19943.1| hypothetical protein PANDA_004986 [Ailuropoda melanoleuca]
Length = 276
Score = 82.7 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 2/139 (1%)
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
+R I +F KDF +A++ + + + LV + D ++ +
Sbjct: 101 IRKIREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHNRLHTLVTENCFPDMVWDITYKTV 160
Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
++S + S +T+R+ + A YD+ L+ ++
Sbjct: 161 RWSFIESLEPPQVVQVRCSSMLSQGNIYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPKD 220
Query: 206 VIDIWTFVRNIPPSNPNWV 224
V++ F +++ +W
Sbjct: 221 VLEYVVFEKHLVNPYGSWR 239
>gi|194910892|ref|XP_001982246.1| GG11153 [Drosophila erecta]
gi|190656884|gb|EDV54116.1| GG11153 [Drosophila erecta]
Length = 361
Score = 82.3 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 43/205 (20%), Positives = 74/205 (36%), Gaps = 13/205 (6%)
Query: 28 RGVLGKKTGNEKPFS-----GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82
RGVL + E+PF G F ++ II+ K+K E +
Sbjct: 94 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQK------LEFLEKKS 147
Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
+ +R I S +F DF EA++ Y + I + V R Y + ++
Sbjct: 148 KSLMAVRKIRSYDENFSSDDFGAEAQDIYIQAHTHMAAKDKYKIREFVSERCYPEMMHNV 207
Query: 143 STRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
+ K ++S + + E +T+R Q + A YD+ L+
Sbjct: 208 KDKTIRWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLMHGSE 267
Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225
I V++ F ++I W L
Sbjct: 268 IITKDVLEYVVFEKHISNEYGKWRL 292
>gi|222081641|ref|YP_002541006.1| hypothetical protein Arad_8042 [Agrobacterium radiobacter K84]
gi|221726320|gb|ACM29409.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 331
Score = 82.3 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/214 (13%), Positives = 62/214 (28%), Gaps = 16/214 (7%)
Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFP 79
+F+ +R + + N + SG + + + + P
Sbjct: 129 AALIFMAIRFAM-RFFANRQQPQYAPSGANASFSMNASKPSSFPIPPIGGGIAGTTQKKP 187
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
++ D F + ++ + +L
Sbjct: 188 AQADDEIGLQQA-------DLDRF----EKLLTEVQSAYGAEDYATLRRLTTPEAMSYLA 236
Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD-KDNLLISS 198
+ L + + + + I + E+N Y T+ + + A D K L+
Sbjct: 237 EELGENATKGVRNSVTDIRLLQGDIAESWREDNAEYATLAMRYSSVDALLDRKTGRLVDG 296
Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
D + +IWTF+R W+L + + E
Sbjct: 297 DDRNASETTEIWTFMRKPGSD---WILSAIQGTE 327
>gi|157786676|ref|NP_001099304.1| 39S ribosomal protein L45, mitochondrial [Rattus norvegicus]
gi|149054036|gb|EDM05853.1| mitochondrial ribosomal protein L45 (predicted) [Rattus norvegicus]
Length = 306
Score = 82.3 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 2/171 (1%)
Query: 56 ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115
K+ L E +R I +F KDF +A++ +
Sbjct: 90 PPEGDARMSSLSKEGLTQRTERLRKNVASQLAIRKIKEFDANFKTKDFPEKAKDIFIEAH 149
Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENT 173
+ LV + D L + V+S + +
Sbjct: 150 LCLNNSDHDRLHTLVTEHCFPDMVWELKYKTVRWSFVESLEPAQVVHVRSSGLVNQSNMY 209
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
+T+R+ + A YD+ L+ ++ V++ F R++ +W
Sbjct: 210 GQVTVRLHTRQTLAIYDRFGRLMYGQEDVPKDVLEYVVFERHLMNPYGSWR 260
>gi|73966162|ref|XP_850801.1| PREDICTED: similar to mitochondrial ribosomal protein L45 [Canis
familiaris]
Length = 303
Score = 82.3 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 48/139 (34%), Gaps = 2/139 (1%)
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
+R I +F KDF +A++ + + LV + D + +
Sbjct: 122 IRKIREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIKYKTV 181
Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
V+S + + +T+R+ + A YD+ L+ ++
Sbjct: 182 RWSFVESLEPPQVVQVRCSNLLNQGNIYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPRD 241
Query: 206 VIDIWTFVRNIPPSNPNWV 224
V++ F +++ +W
Sbjct: 242 VLEYVVFEKHLVNPYGSWR 260
>gi|332702904|ref|ZP_08422992.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
africanus str. Walvis Bay]
gi|332553053|gb|EGJ50097.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
africanus str. Walvis Bay]
Length = 343
Score = 82.3 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 28/221 (12%), Positives = 63/221 (28%), Gaps = 23/221 (10%)
Query: 12 LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71
+LLF +F +R + S S + R + +
Sbjct: 145 ELLLFGLAGLMLFRFIRS---------RKVSQASSAAMAGNDRYAYAAAQADRSSPAASA 195
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
S + L + + ++ D +FL+ A+ Y + S+ + I
Sbjct: 196 GSWDSLRSASAQASSAPEAGPAMPEGLDEAEFLSGAKALYARLQASWNRRDLKDIRAFTS 255
Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
V + + + + V + + +++ + IT+
Sbjct: 256 PEVLAEIERQAAE----DPTPDKTDVLMLNARVLEVRRDGQQTVITVLYDALLRE----- 306
Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+V ++W R+ P W+L + E
Sbjct: 307 -----DQSASQPTQVREVWHIRRDESAPRPEWILEGIQQLE 342
>gi|323137415|ref|ZP_08072493.1| import inner membrane translocase subunit Tim44 [Methylocystis sp.
ATCC 49242]
gi|322397402|gb|EFX99925.1| import inner membrane translocase subunit Tim44 [Methylocystis sp.
ATCC 49242]
Length = 336
Score = 82.3 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 31/223 (13%), Positives = 57/223 (25%), Gaps = 11/223 (4%)
Query: 11 FLILLFAF-ITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
I+ F I VFL + + G + G
Sbjct: 122 MSIIGFLMQIALVVFL-------ARMAFMWWANRNAPAGAGSRPGAPFGSMFTGGAPFGA 174
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
G + + +DF N ++ + A+ +
Sbjct: 175 KGPGAGGFRAAGFGSGAAPQGARATPLKVQAEDF-NAFERLLGETQAAYSREDLGALRMM 233
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+ F+D L + + S V + + A E + Y T+ +
Sbjct: 234 STPEMASYFDDELDENRRKGVVNRVSDVKLLQGDLSEAWREGSDEYATVAMRFSLNDVME 293
Query: 190 DK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
D+ P V ++WTF R W L + +
Sbjct: 294 DRATGKPTPGSPGKSEAV-EVWTFRRPAGAGPQEWKLSAIQQA 335
>gi|170691129|ref|ZP_02882295.1| import inner membrane translocase subunit Tim44 [Burkholderia
graminis C4D1M]
gi|170144378|gb|EDT12540.1| import inner membrane translocase subunit Tim44 [Burkholderia
graminis C4D1M]
Length = 324
Score = 82.3 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 24/229 (10%), Positives = 59/229 (25%), Gaps = 20/229 (8%)
Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
+M S LI L +F R + ++ G +
Sbjct: 115 AQMLSNMLLIGLVVMAGVMLF---RFIANRRR--PDLAYGQGAASRSQGNGSPFQHPNQN 169
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
+ D + S D + + A+ + + ++ +
Sbjct: 170 GQARPDTNFFGTQRAATNPVAATGAFSAPSQPLGLDQAELVTSAKTMFMRLQRAWDANEQ 229
Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
+ +L + F + + V D +++ N ++++R
Sbjct: 230 GDLFELTTPEM---FAQLKRDLEGRGSQPSRTEVPQLDAEVLGVESTANETFVSVRFY-- 284
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ D ++W VR+ + W L + +
Sbjct: 285 ---------GQMREDDAPTAQPFQEVWNIVRSAHTGD-TWRLAGIQQLD 323
>gi|89900086|ref|YP_522557.1| import inner membrane translocase subunit Tim44 [Rhodoferax
ferrireducens T118]
gi|89344823|gb|ABD69026.1| import inner membrane translocase, subunit Tim44 [Rhodoferax
ferrireducens T118]
Length = 318
Score = 82.3 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 20/246 (8%), Positives = 79/246 (32%), Gaps = 30/246 (12%)
Query: 5 KMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK 64
M IL+FA + + + + ++G + + + + +
Sbjct: 85 GMGGAFGQILMFALLAMVIMMAVAWFKRSRSGAQSQDTAKSPFAFQGAAPATAAQLPASY 144
Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVS-----------------VYTDFDPKDFLNEA 107
+ D+ + + + ++ + V FD + FL A
Sbjct: 145 RPENVGNDASARPWERNSTAFEALKTTPAVAGSMIGSGLAGSQSWGVPDGFDAEGFLTSA 204
Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN-EKNVKSSLVGIDDMKIIN 166
+ ++ ++ ++ + ++A+ ++ + ++ L+ R+++ V + V + + +++
Sbjct: 205 KANFVSLQAAWDKSDINALRVMMTDTMLKEIQAQLAEREAHTGGPVNLTDVVMIEAQLLG 264
Query: 167 ASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226
+ ++ ++ ++W + W++
Sbjct: 265 IEDTGDDYMASVEF-----------SGMIREEPSAGASPFREVWNMTK-TKSGKSGWLVA 312
Query: 227 STKLGE 232
+ +
Sbjct: 313 GVQALQ 318
>gi|187479558|ref|YP_787583.1| membrane protein [Bordetella avium 197N]
gi|115424145|emb|CAJ50698.1| Putative membrane protein [Bordetella avium 197N]
Length = 328
Score = 81.9 bits (200), Expect = 6e-14, Method: Composition-based stats.
Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 26/224 (11%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
+ +++FA + F+ +LRG ++ + + G S + +++ +
Sbjct: 124 SALLIGLVVFAVL--FIVRRLRGASAQRPAMQGAYGGAGSQQAAQTQQPMW-------RE 174
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ V DFD FL +A+ + I + G V +
Sbjct: 175 ASMPAAAPVAAAAPAALPKAGEDGNWFVPGDFDTPRFLQQAKEQFVRIQAIWDSGNVDNL 234
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
L+ + +F L R V + V + + +++ + ++R
Sbjct: 235 RDLLTDDLIAEFKPQLEAR---GNEVNKTEVVLLNAELLGIETVSDGHLASVRF------ 285
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+L + + ++W + W+L +
Sbjct: 286 -----SGMLREAPGAEAFRFEEVWNLFKPTTGG---WLLAGIQQ 321
>gi|66550524|ref|XP_625034.1| PREDICTED: probable 39S ribosomal protein L45, mitochondrial [Apis
mellifera]
Length = 332
Score = 81.9 bits (200), Expect = 6e-14, Method: Composition-based stats.
Identities = 33/200 (16%), Positives = 66/200 (33%), Gaps = 3/200 (1%)
Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87
G++ ++T NE+P + S G I E ++
Sbjct: 80 YGIMPQRTWNERPIYISSTPGIFESYIVPEGDGKFSPITTTGAKQKI-EFINKKSKSFIA 138
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
+R I ++ K FL + + Y+ ++ K I K V Y ++ +
Sbjct: 139 LRKIKGYEENYTTKTFLEQTLDIYKKAHEALCTQKKDEILKYVTETAYPIMIHNIKNKTI 198
Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
K ++S + + +TIR Q I YD+ ++ +
Sbjct: 199 IWKFMESLEPARLVHARVTSIVTQGNEFAQVTIRFHTQQILCIYDRFGRVLLGSETVKKD 258
Query: 206 VIDIWTFVRNIPPSNPNWVL 225
V+D F +++ W +
Sbjct: 259 VLDYIVFEKHLSNEYGIWRI 278
>gi|332534647|ref|ZP_08410479.1| hypothetical protein PH505_bn00240 [Pseudoalteromonas haloplanktis
ANT/505]
gi|332035927|gb|EGI72408.1| hypothetical protein PH505_bn00240 [Pseudoalteromonas haloplanktis
ANT/505]
Length = 284
Score = 81.9 bits (200), Expect = 6e-14, Method: Composition-based stats.
Identities = 23/223 (10%), Positives = 62/223 (27%), Gaps = 33/223 (14%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
++L A F+ +L TG + S + +
Sbjct: 89 GFQLLEMILLAG-GLFILFKLV------TGFLRANRAPQLASPSTSAQQNAFKQAPIEQP 141
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ + ++ +FD FL AR+ Y + ++ +
Sbjct: 142 TSTGF---------ASSAPQGESVPFNLPPNFDVNGFLQGARSHYHTLQTAWNNADYTTM 192
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ + + +F + V D +++ A + +++R
Sbjct: 193 AEYLSPTLVAEFKAEREA-----IQSVETEVMFIDAELVRADTNAQSWQVSVRF------ 241
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
+ +++IW R + + W+++ +
Sbjct: 242 -----KGKYRDLGDKKEEPILEIWHLER-LMSDDAPWLIVGVE 278
>gi|192292770|ref|YP_001993375.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
palustris TIE-1]
gi|192286519|gb|ACF02900.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
palustris TIE-1]
Length = 337
Score = 81.9 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 35/220 (15%), Positives = 67/220 (30%), Gaps = 19/220 (8%)
Query: 13 ILLFAFITFFVFL-QLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71
I L + V L +L ++ N +P + +G + G
Sbjct: 133 IGLVLQVALVVILARLAWGWWQRRNNPQPAYAAGQAPGQGPQPMNQGPQSPGPQAAYRTG 192
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
L D + F I ++ + + +L
Sbjct: 193 FGFGGGASNDRPLEIKPE---------DYEAF----ERLLGDIQAAWSNEDIDRLRQLAT 239
Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
+ F L K+ K S V + + A E + Y T+ + + + ++
Sbjct: 240 PEMASYFAKDLEENKAANDINKVSDVKLLQGDLAEAWREGESDYATVAMRFSLVDKTLER 299
Query: 192 -DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
N L++ E +V +IWTF R +W L + +
Sbjct: 300 GTNRLVAGS-ETPIEVTEIWTFTRR---PGASWELAAIQQ 335
>gi|316968065|gb|EFV52405.1| conserved hypothetical protein [Trichinella spiralis]
Length = 468
Score = 81.9 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 28/182 (15%), Positives = 65/182 (35%), Gaps = 4/182 (2%)
Query: 48 KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107
+ S+ GK + D++ + F +++V+ +I + +FD DF +
Sbjct: 279 QIAESENPVVRATRYFGGKLSEFFDNLLDAFLDNCSVSEVLTEICKIDPNFDVTDFRKQC 338
Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167
+ + I ++ G+ + + LS K L ID+++II
Sbjct: 339 QRDF--IPNASNRGEEEILRDWCSEGAFNQLIALLSECKRAGYKHTFRLFDIDNVEIITG 396
Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN--PNWVL 225
I + + + + + D + + + +W F R++ N W +
Sbjct: 397 KITDMGPVLLVAFQTRQLRCIQTPDGKFVFGTTDDPLLITHLWAFCRDVDEPNSKAAWRV 456
Query: 226 IS 227
+
Sbjct: 457 VD 458
>gi|299067983|emb|CBJ39197.1| conserved membrane protein of unknown function [Ralstonia
solanacearum CMR15]
Length = 345
Score = 81.9 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/243 (10%), Positives = 66/243 (27%), Gaps = 38/243 (15%)
Query: 13 ILLFAFITFFVFLQLRGVLGKK-------------TGNEKPFSGFFSGKYVF-------- 51
++L A I F V +R + G + +G+ +P+ +
Sbjct: 118 LILIAIIAFVVMWIIRKLRGSRPQEPAYATGGPSLSGDREPYVPSPAAPAAQPAAPVAAS 177
Query: 52 --SKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN 109
+ + +L + V DFD + FL A+
Sbjct: 178 AGTGNASGLGSGAQTAAQAWSLGGPAAPAANAPAAAPAAQQPWGVPADFDTQAFLRNAKV 237
Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI 169
+ + ++ G ++ I + + F + + V + +++
Sbjct: 238 YFVRLQAAWDAGNLNDIREFTTPEM---FAEIKMDLTDRGTVPNKTDVVSVEAELLGIET 294
Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
++R ++ ++W + + WVL +
Sbjct: 295 HPTEYLASVRF-----------SGMIREEASAPAQPFAEVWNLTKP-TQGSGGWVLAGIQ 342
Query: 230 LGE 232
+
Sbjct: 343 QLQ 345
>gi|39936942|ref|NP_949218.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
palustris CGA009]
gi|39650799|emb|CAE29322.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
Length = 337
Score = 81.9 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 35/220 (15%), Positives = 67/220 (30%), Gaps = 19/220 (8%)
Query: 13 ILLFAFITFFVFL-QLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71
I L + V L +L ++ N +P + +G + G
Sbjct: 133 IGLVLQVALVVILARLAWGWWQRRNNPQPAYAAGQAPGQGPQPMNQGPQSPGPQAAYRTG 192
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
L D + F I ++ + + +L
Sbjct: 193 FGFGGGASNDRPLEIKPE---------DYEAF----ERLLGDIQAAWSNEDIDRLRQLAT 239
Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
+ F L K+ K S V + + A E + Y T+ + + + ++
Sbjct: 240 PEMASYFAKDLEENKAANDINKVSDVKLLQGDLAEAWREGESDYATVAMRFSLVDKTLER 299
Query: 192 -DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
N L++ E +V +IWTF R +W L + +
Sbjct: 300 GTNRLVAGS-ETPIEVTEIWTFTRR---PGASWELAAIQQ 335
>gi|209552377|ref|YP_002284292.1| import inner membrane translocase subunit Tim44 [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|209539489|gb|ACI59421.1| import inner membrane translocase subunit Tim44 [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 332
Score = 81.5 bits (199), Expect = 7e-14, Method: Composition-based stats.
Identities = 31/218 (14%), Positives = 63/218 (28%), Gaps = 19/218 (8%)
Query: 16 FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
A I L +R ++ +P G FS+ +
Sbjct: 129 IALIGGAFMLAMRYFANRR----QPSYGAGGQSGSFSRSYSMSPANNSSFQIPAIGSGAG 184
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
+ L++ + ++ + +L
Sbjct: 185 SGASSRPSDEIGLAQAD-----------LDQFEELLTDVQTAYGAEDYATLRRLTTPEAM 233
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NL 194
+ L +N + S V + I A E+ Y T+ + I A +++
Sbjct: 234 SYLAEELGENATNGVRNRVSDVKLLQGDIAEAWREDGQEYATLAMRYSSIDAMVERNSGR 293
Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
++S D + ++WTFVR +W L + + E
Sbjct: 294 VVSGDDRRPSESTEVWTFVRK---PGADWKLAAIQGSE 328
>gi|21355709|ref|NP_651072.1| mitochondrial ribosomal protein L45 [Drosophila melanogaster]
gi|29611874|sp|Q9VCX3|RM45_DROME RecName: Full=Probable 39S ribosomal protein L45, mitochondrial;
Short=L45mt; Short=MRP-L45; Flags: Precursor
gi|7300891|gb|AAF56032.1| mitochondrial ribosomal protein L45 [Drosophila melanogaster]
gi|17945151|gb|AAL48635.1| RE09223p [Drosophila melanogaster]
gi|220947926|gb|ACL86506.1| mRpL45-PA [synthetic construct]
gi|220957222|gb|ACL91154.1| mRpL45-PA [synthetic construct]
Length = 361
Score = 81.5 bits (199), Expect = 7e-14, Method: Composition-based stats.
Identities = 43/205 (20%), Positives = 74/205 (36%), Gaps = 13/205 (6%)
Query: 28 RGVLGKKTGNEKPFS-----GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82
RGVL + E+PF G F ++ II+ K+K E +
Sbjct: 94 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQK------LEFLEKKS 147
Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
+ +R I S +F DF EA++ Y + I + V R Y + ++
Sbjct: 148 KSLMAVRKIRSYDENFSSDDFGAEAQDIYIQAHTHMAAKDKYKIREFVSERCYPEMMHNV 207
Query: 143 STRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
+ K ++S + + E +T+R Q + A YD+ L+
Sbjct: 208 KDKTIRWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLMHGSE 267
Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225
I V++ F ++I W L
Sbjct: 268 IITKDVLEYVVFEKHISNEYGKWRL 292
>gi|255320354|ref|ZP_05361538.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
gi|255302549|gb|EET81782.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
Length = 333
Score = 81.5 bits (199), Expect = 8e-14, Method: Composition-based stats.
Identities = 27/231 (11%), Positives = 65/231 (28%), Gaps = 35/231 (15%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
+LL A + FFVF +K G +K + + + + +
Sbjct: 126 LWVLLAAAVAFFVF--------RKFGAKKKLATNNPYAPNSAGPNPSPFGQHNAAPRTQD 177
Query: 71 LDSINELFPIGTRLNKVMRDIV-----------SVYTDFDPKDFLNEARNSYEAIVDSFF 119
+I G+ + + +P FL AR + I
Sbjct: 178 NTNIFGQSVGGSSTAANTANNAPFGTAYTNSGQQLPDGTEPAAFLRIARQRFNHIQSMNT 237
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
+ I + + +Y + ++ + + ++++ E +++R
Sbjct: 238 ASNIEEIRRYLTPELYNAMRSDIM----ANQDQDVAEFSNLNAMVVDSVTENGQYVVSVR 293
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ + + W FV+ +WV+ +
Sbjct: 294 F-----------TGTVSEDLNSLPQPFSETWHFVKPAGSQQ-DWVVAGIQQ 332
>gi|262379363|ref|ZP_06072519.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|262298820|gb|EEY86733.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
Length = 325
Score = 81.5 bits (199), Expect = 8e-14, Method: Composition-based stats.
Identities = 27/231 (11%), Positives = 65/231 (28%), Gaps = 35/231 (15%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
+LL A + FFVF +K G +K + + + + +
Sbjct: 118 LWVLLAAAVAFFVF--------RKFGAKKKLATNNPYAPNSAGPNPSPFGQHNAAPRTQD 169
Query: 71 LDSINELFPIGTRLNKVMRDIV-----------SVYTDFDPKDFLNEARNSYEAIVDSFF 119
+I G+ + + +P FL AR + I
Sbjct: 170 NTNIFGQSVGGSSTAANTANNAPFGTAYTNSGQQLPDGTEPAAFLRIARQRFNHIQSMNT 229
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
+ I + + +Y + ++ + + ++++ E +++R
Sbjct: 230 ASNIEEIRRYLTPELYNAMRSDIM----ANQDQDVAEFSNLNAMVVDSVTENGQYVVSVR 285
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ + + W FV+ +WV+ +
Sbjct: 286 F-----------TGTVSEDLNSLPQPFSETWHFVKPAGSQQ-DWVVAGIQQ 324
>gi|86360020|ref|YP_471910.1| hypothetical protein RHE_PB00141 [Rhizobium etli CFN 42]
gi|86284122|gb|ABC93183.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 337
Score = 81.5 bits (199), Expect = 8e-14, Method: Composition-based stats.
Identities = 33/215 (15%), Positives = 64/215 (29%), Gaps = 16/215 (7%)
Query: 16 FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSIN 75
A I V L +R ++ Y + + + I
Sbjct: 131 IALIGGAVMLAMRYFANRRQ-----------PSYGAGGQSRSYGQSFNMAPTNHSSFHIP 179
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
+ + + S D L++ ++ ++ + +L
Sbjct: 180 AIGSGAGYGGQSRGNRPSDEIGLTQAD-LDQFEELLTSVQTAYGAEDYGTLRRLTTPEAM 238
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NL 194
+ L +N + S V + I A E Y T+ + I A ++D
Sbjct: 239 SYLAEELGENATNGVRNRVSDVKLLQGDIAEAWRENGQEYATLAMRYSSIDAMVERDSGR 298
Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
++S D + +IWTFVR W L + +
Sbjct: 299 VVSGDDRRPSESTEIWTFVRKSGAD---WKLAAIQ 330
>gi|149927075|ref|ZP_01915333.1| hypothetical protein LMED105_09477 [Limnobacter sp. MED105]
gi|149824296|gb|EDM83516.1| hypothetical protein LMED105_09477 [Limnobacter sp. MED105]
Length = 340
Score = 81.5 bits (199), Expect = 8e-14, Method: Composition-based stats.
Identities = 30/232 (12%), Positives = 62/232 (26%), Gaps = 23/232 (9%)
Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSK-------RDE 56
M +L+ A F V +R + G++ +P
Sbjct: 122 AGMAEFLGTMLMIAAAVFAVMFLVRMLRGQQAAKPRPAYSAPGATGSGQNSYRQASTNPI 181
Query: 57 RGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116
+ + D + + FD +F+N A+ + +
Sbjct: 182 NDPVPGMGAPRNDQGFGQFGNASAFDAPMPAATPVKDLPAGFDEANFVNSAKKFFVTMQG 241
Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
F +G V + + V + R V + V D ++I + +
Sbjct: 242 VFDKGDVDGLREYCSDDVVDHLRAEIEAR---GNAVNRTDVVTLDAQLIGFETDVDEQIA 298
Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
T+ +L ++ ++W R + WVL
Sbjct: 299 TVAF-----------TGMLREEQDAAAEEINELWIMSRPVSGGG--WVLSGI 337
>gi|71735681|ref|YP_277225.1| Tim44-like domain-contain protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257485679|ref|ZP_05639720.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|289625508|ref|ZP_06458462.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
gi|289649763|ref|ZP_06481106.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. aesculi
str. 2250]
gi|71556234|gb|AAZ35445.1| Tim44-like domain family [Pseudomonas syringae pv. phaseolicola
1448A]
gi|320321766|gb|EFW77864.1| Tim44-like domain-containing protein [Pseudomonas syringae pv.
glycinea str. B076]
gi|320331516|gb|EFW87456.1| Tim44-like domain-containing protein [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330870932|gb|EGH05641.1| Tim44-like domain-containing protein [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330880967|gb|EGH15116.1| Tim44-like domain-containing protein [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330986943|gb|EGH85046.1| Tim44-like domain-contain protein [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331011967|gb|EGH92023.1| Tim44-like domain-containing protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 280
Score = 81.5 bits (199), Expect = 9e-14, Method: Composition-based stats.
Identities = 29/232 (12%), Positives = 73/232 (31%), Gaps = 40/232 (17%)
Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58
+F+ F IL+ I F +F R + ++ + + + S + +
Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPYQRESSQPAQN 140
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
I G+ +++ F+ + FL AR ++++ +
Sbjct: 141 PI-------------------FGSSSPASAAPVINAPAWFNEERFLEAARGHFQSLQQHW 181
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
++ I + V ++ Q R +S+ + +++ + T+
Sbjct: 182 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTYIDNLQVQLDGVDDRADKTIATL 238
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G S+ +D + + W R + P W++ +
Sbjct: 239 TFSGVSKSSRFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 278
>gi|163854788|ref|YP_001629086.1| hypothetical protein Bpet0483 [Bordetella petrii DSM 12804]
gi|163258516|emb|CAP40815.1| conserved hypothetical protein [Bordetella petrii]
Length = 332
Score = 81.5 bits (199), Expect = 9e-14, Method: Composition-based stats.
Identities = 25/220 (11%), Positives = 68/220 (30%), Gaps = 20/220 (9%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
+++FA + F+ +LRGV G + + + ++ +
Sbjct: 126 IGLVVFAVL--FIVRRLRGV-GPRHATQGAYGAARQEHAGQGQQPMWRQSAGASAGSAAS 182
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+ P + + DF+ +FL +A+ + I + G + + +
Sbjct: 183 PAAAAAPAPAAGLPAADDDNNWYIPGDFNTTEFLKKAKEQFVQIQAIWDSGDTDRLREFL 242
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
+ + L+ R + V + + +++ + ++R
Sbjct: 243 TDDLIAELKQQLAER---GAAPNQTEVVLLNAELLGIETVSDGHLASVRF---------- 289
Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+L + + +IW + W+L +
Sbjct: 290 -SGMLREAPGTEAFRFEEIWNLFKP---QQGGWLLAGIQQ 325
>gi|47216426|emb|CAG01977.1| unnamed protein product [Tetraodon nigroviridis]
Length = 405
Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/185 (15%), Positives = 64/185 (34%), Gaps = 9/185 (4%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEA 113
+ + D + T +++V+ +IV FD FL + ++
Sbjct: 214 ESDNALIRASRAVTDRVTDFLGGLFSKTEMSEVLTEIVKADPTFDKDSFLKQCEKDIIPN 273
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I+++ G++ ++ Y + K+ +S ++ ID++ + + E
Sbjct: 274 ILEAMIRGELDVLKDWCYEATYSQLAHPIQQAKALGLRFQSKVLDIDNIDLAMGKMMEQG 333
Query: 174 VYITIRIVGQFISASYDKDNLLISSDP------EIFGKVIDIWTFVRNIPPSNP--NWVL 225
+ I Q I ++ DP +++ +W R+ NP W L
Sbjct: 334 PVLIITFQAQVIMVIRSPKGDIVEGDPVSTVTSGKVMRMMYVWALCRDQEELNPSAAWRL 393
Query: 226 ISTKL 230
+
Sbjct: 394 LDISA 398
>gi|329916047|ref|ZP_08276350.1| putative membrane protein [Oxalobacteraceae bacterium IMCC9480]
gi|327544779|gb|EGF30180.1| putative membrane protein [Oxalobacteraceae bacterium IMCC9480]
Length = 204
Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/227 (11%), Positives = 67/227 (29%), Gaps = 26/227 (11%)
Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
M S ++ L A F ++ K S + F+ + G+
Sbjct: 2 ASMISTMLMVGLLAA-AGFFIYRMF----------KRKSEQGGTQPAFAGAAKTGLTPDI 50
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
+ D G+ + V DFD F+ + + + ++ V
Sbjct: 51 GSRIDPATDYRFGSNSAGSATGNSAQAPWGVPADFDTTGFVRHTKTYFVRLQAAWDSANV 110
Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
+ I + ++ + + R + + V D +++ + ++ +++
Sbjct: 111 NDIREFTTPEMFAELRLQIQER---GPSDSHTDVVQLDAELLGMELVDDDHLASVKF--- 164
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++ SD ++W + WVL +
Sbjct: 165 --------SGMIKESDAAPAEPFTEVWNLSKPRNGQGG-WVLAGIQQ 202
>gi|194374347|dbj|BAG57069.1| unnamed protein product [Homo sapiens]
Length = 329
Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 2/139 (1%)
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
+R I +F KDF +A++ + + LV + D + +
Sbjct: 145 IRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKTV 204
Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
V+S + + IT+R+ + A YD+ L+ ++
Sbjct: 205 RWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKD 264
Query: 206 VIDIWTFVRNIPPSNPNWV 224
V++ F + + +W
Sbjct: 265 VLEYVVFEKQLTNPYGSWR 283
>gi|296202660|ref|XP_002748546.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like
[Callithrix jacchus]
Length = 329
Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 46/140 (32%), Gaps = 2/140 (1%)
Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
+R I F KDF +A++ + + LV + D + +
Sbjct: 144 AIRKIKEHDASFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKCKT 203
Query: 147 SNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFG 204
V+S + + +T+R+ + A YD+ L+ ++
Sbjct: 204 VRWSFVESLEPSHVVQVRCSSMVNESNMYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPK 263
Query: 205 KVIDIWTFVRNIPPSNPNWV 224
V++ F + + +W
Sbjct: 264 DVLEYVVFEKQLVNPYGSWR 283
>gi|167525988|ref|XP_001747328.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774163|gb|EDQ87795.1| predicted protein [Monosiga brevicollis MX1]
Length = 437
Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/193 (11%), Positives = 62/193 (32%), Gaps = 3/193 (1%)
Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
E + ++ G D L V+ ++ +
Sbjct: 235 ENNPVLNRIFDLQMKYDESDNVLVRGARSVTDTLTDRLGQVFENDESGAVLAEVQRLDPT 294
Query: 98 FDPKDFLNEA-RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
FD F + A++++F G +++ + + + R+++ ++ +
Sbjct: 295 FDRLAFTLHCEKKVIPAVLEAFIAGDKEVLKEWCAEVCFNNMAAQIDQREASGIIYEARI 354
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
+ I D++ I A + + Q D+ ++ + + + ++ RN
Sbjct: 355 LDIADVEYITAQRMDEGPVLVFVFNAQQTHCIRDRTGAVVEGSEDNIQQSMYMFAMRRNP 414
Query: 217 PPSNP--NWVLIS 227
+P W ++
Sbjct: 415 AIFDPKLAWQVLE 427
>gi|302187827|ref|ZP_07264500.1| Tim44-like domain-contain protein [Pseudomonas syringae pv.
syringae 642]
Length = 280
Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/232 (11%), Positives = 74/232 (31%), Gaps = 40/232 (17%)
Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58
+F+ F IL+ I F +F R + ++ + + + + + +
Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPYQRETSQPAQN 140
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ G+ +++ FD + FL+ AR ++++ +
Sbjct: 141 PV-------------------FGSSSPASAAPVINAPAWFDEQRFLDAARGHFQSLQQHW 181
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
++ I + V ++ Q R +S+ + +++ + T+
Sbjct: 182 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTYIENLQVQLDGVDDRADKTIATL 238
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D + + W R + P W++ +
Sbjct: 239 TFSGVSKTSRFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 278
>gi|225451048|ref|XP_002284948.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 299
Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 9/154 (5%)
Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
L + + F EA + Y+ I ++ K V +Y + +
Sbjct: 142 ELKSAYAVAKLRKIGYSRQKFYTEAVDLYKEINSQIANSAKASLRKSVTENMYSALKNEI 201
Query: 143 STRKSNEKNVKSSLVGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
R+S V +V + I + + + +T+ + + +YD
Sbjct: 202 KQRESKWHKVYWEMVEPVVKIRTLRARMISIDRNDMNKAFIQLTLEFLTKQKFEAYDSKG 261
Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
+++ D + V D+W F R++ W L
Sbjct: 262 CVVAGDKDKEVLVRDVWVFERSLFHPGAYWRLCG 295
>gi|145590075|ref|YP_001156672.1| import inner membrane translocase, subunit Tim44 [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145048481|gb|ABP35108.1| import inner membrane translocase, subunit Tim44 [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 303
Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/224 (12%), Positives = 60/224 (26%), Gaps = 26/224 (11%)
Query: 8 SGDFLILLFAFITFFVFLQL-RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
S LL A I FV + L R +L P +
Sbjct: 103 SSLITGLLIAMIAGFVIMFLIRKIL--------PALSGAGQNTNVPPAAVPRSNLDQTPR 154
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ + + ++ + FD + FL A+ + + ++ G + A+
Sbjct: 155 QDPGFAPAANAYSGVSAADEKFEST--IPAGFDERTFLENAKQYFVNLQKAWDLGDLAAL 212
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ + F + + V D K++ E + +++
Sbjct: 213 GEFTTPEM---FATIQQDLAGRSDSANQTDVLSIDAKLLGIETSEAHYFCSVQF------ 263
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++ +IW + + WVL
Sbjct: 264 -----KGMIREQPGAPASDFSEIWNLSKPVNGPGG-WVLAGISQ 301
>gi|195502658|ref|XP_002098321.1| GE10319 [Drosophila yakuba]
gi|194184422|gb|EDW98033.1| GE10319 [Drosophila yakuba]
Length = 361
Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/205 (20%), Positives = 75/205 (36%), Gaps = 13/205 (6%)
Query: 28 RGVLGKKTGNEKPFS-----GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82
RGVL + E+PF G F ++ II+ K+K E +
Sbjct: 94 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQK------LEFLEKKS 147
Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
+ +R I S F DF EA++ Y + + I + V R Y + ++
Sbjct: 148 KSLMAVRKIRSYEESFSTDDFGAEAQDIYIQAHTHMAAKEKYKIREFVSERCYPEMMHNV 207
Query: 143 STRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
+ + K ++S + + E +T+R Q + A YD+ L+
Sbjct: 208 KDKTIHWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLMHGSE 267
Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225
+ V++ F ++I W L
Sbjct: 268 IVTKDVLEYVVFEKHISNEYGKWRL 292
>gi|170042852|ref|XP_001849125.1| 39S ribosomal protein L45 [Culex quinquefasciatus]
gi|167866282|gb|EDS29665.1| 39S ribosomal protein L45 [Culex quinquefasciatus]
Length = 336
Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 75/200 (37%), Gaps = 3/200 (1%)
Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87
RG+L + E+PF +G VF K+ E T+
Sbjct: 83 RGLLPPRPWLERPFHISCTG-GVFEPYIPPEGDGKMSAVSKEGAKQKFEQLEKKTKSMMA 141
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
+R I S DF+P +F A++ Y ++ + + ++V R Y + ++S +
Sbjct: 142 IRKIRSYDDDFEPPEFAGYAQDIYIDTHNTLAAKNKYKLREIVTERAYPELIHNVSDKTI 201
Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
+ K +KS + S + +T+R Q I A YD+ L+ I
Sbjct: 202 HWKFLKSLEPPRVVHARCTDVISKDNIFAQVTVRFHSQQILAIYDRFGRLMHGSETIAKD 261
Query: 206 VIDIWTFVRNIPPSNPNWVL 225
++ F +++ W L
Sbjct: 262 CLEYVVFEKHVSNEYGVWRL 281
>gi|118782853|ref|XP_312541.3| AGAP002412-PA [Anopheles gambiae str. PEST]
gi|116129764|gb|EAA08051.3| AGAP002412-PA [Anopheles gambiae str. PEST]
Length = 335
Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 3/200 (1%)
Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87
RG++ + E+PF +G VF ++ E T+
Sbjct: 85 RGIMPPRPWLERPFHISCTG-GVFEPYIPPEGDGRMSAISREGAKQKIEQLEKKTKSMMA 143
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
+R I + DF+P +F A++ Y + E + + ++V R Y + +++ +
Sbjct: 144 IRKIRNYDEDFEPPEFATLAQDIYIEAHKTLCEKNKYKLREIVTERAYPELMHNVADKTI 203
Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
+ +KS + + E +T+R Q A YD+ L+ +
Sbjct: 204 RWQFLKSLEPPRVVHARCTDVITKENIFAQVTVRFHSQQTLAIYDRFGRLMHGSETVAKD 263
Query: 206 VIDIWTFVRNIPPSNPNWVL 225
I+ F +++ W L
Sbjct: 264 CIEYVVFEKHLANEYGVWRL 283
>gi|212702059|ref|ZP_03310187.1| hypothetical protein DESPIG_00061 [Desulfovibrio piger ATCC 29098]
gi|212674574|gb|EEB35057.1| hypothetical protein DESPIG_00061 [Desulfovibrio piger ATCC 29098]
Length = 300
Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/222 (13%), Positives = 68/222 (30%), Gaps = 27/222 (12%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
ILL + +F+ L+ ++ + +G + G + +
Sbjct: 105 IMDILLLGIL---LFVGLKLFARSRSKAQPAPAG--------AGNAPMGGMEPPLQRNDT 153
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+ L N ++ + DFD ++FL A+ +Y + ++ ++ I +
Sbjct: 154 AAAGWDTLSSQDNTYNSQPEVVIPMPADFDAEEFLRGAKMAYNRLQAAWDNRDLNDIAQF 213
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
V L+ + + + + ++++ E+ +
Sbjct: 214 ASPAVMDAVRQQLAEETE----PSKTEILLVNAQLLSVVNEDKEQRAQVYFDVLMRERP- 268
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
D V +IW FVR + W L +
Sbjct: 269 ---------DQPTPSNVREIWHFVREL--DGGTWKLDGIQQV 299
>gi|330961416|gb|EGH61676.1| Tim44-like domain-containing protein [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 280
Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/232 (12%), Positives = 73/232 (31%), Gaps = 40/232 (17%)
Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58
+F+ F IL+ I F +F R + ++ + + + + + +
Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPYQREASQPGQN 140
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
I G+ +++ F+ + FL AR ++A+ +
Sbjct: 141 PI-------------------FGSSAPASAAPVINAPAWFNEERFLEAARGHFQALQQHW 181
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
++ I + V ++ Q R +S+ + +++ + T+
Sbjct: 182 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTFIDNLSVQLDGVDDRADKTIATL 238
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D + + W R + P W++ +
Sbjct: 239 TFSGVSKTSRFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 278
>gi|237756615|ref|ZP_04585131.1| import inner membrane translocase, subunit Tim44
[Sulfurihydrogenibium yellowstonense SS-5]
gi|237691229|gb|EEP60321.1| import inner membrane translocase, subunit Tim44
[Sulfurihydrogenibium yellowstonense SS-5]
Length = 296
Score = 80.7 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 9/219 (4%)
Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73
LL A +F L LG + R + N +
Sbjct: 85 LLGALAGMAIFSALSHFLGPQFAAGVLGLLGLLLLAGLIFFVIRLFRKREEPSYASNTNL 144
Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
+ + + + + LN ++ + I ++ G + ++ + R
Sbjct: 145 NYQPYQYDDSQTQA-----GSLPYINEELILNLTKSIFYDIQKAWSNGDLSPVKNFLTDR 199
Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
+YQ + L K+ I++++I++ E + + +R+ I + D D
Sbjct: 200 MYQYLEEQLKELKAKGLRNIVENPKIENLEIVHVEEEGDNKVVIVRLDASAIDYTVDSDG 259
Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
++ D + W FV NW L K +
Sbjct: 260 NIVEGDKYNPVSFTEYWAFV----GKALNWKLDDIKQVD 294
>gi|187924050|ref|YP_001895692.1| import inner membrane translocase subunit Tim44 [Burkholderia
phytofirmans PsJN]
gi|187715244|gb|ACD16468.1| import inner membrane translocase subunit Tim44 [Burkholderia
phytofirmans PsJN]
Length = 320
Score = 80.7 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 19/221 (8%), Positives = 63/221 (28%), Gaps = 22/221 (9%)
Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73
LL + F + R + ++ + +++ G+ + +
Sbjct: 120 LLIGAVIFAGVMLFRFIANRRR-----PDLAYGNGAANRQQNGGTPFLNQMGQARPETTN 174
Query: 74 INELFPIGTRLNKVMRDIVSVY--TDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
+ + + D +L A+ + + ++ + + +L
Sbjct: 175 FRGWPRAAMGSAAGADTVKAPELSSGPDQAAYLVTAKAMFMRLQGAWDRNEQGDLFELTT 234
Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
+ F ++ + + V D ++++ + +++R
Sbjct: 235 PEM---FARLKQDLETRGREPSHTEVPQLDAEVLSTQSNADETLVSVRFY---------- 281
Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ D + +IW V+ + W L + +
Sbjct: 282 -GQIREDDAQTAQPFQEIWNLVKQ-TQGDQAWRLAGIQQID 320
>gi|114676397|ref|XP_512553.2| PREDICTED: 39S ribosomal protein L45, mitochondrial [Pan
troglodytes]
Length = 306
Score = 80.7 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 2/139 (1%)
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
+R I +F KDF +A++ + + LV + D + +
Sbjct: 122 IRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKTV 181
Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
V+S + + IT+R+ + A YD+ L+ ++
Sbjct: 182 RWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKD 241
Query: 206 VIDIWTFVRNIPPSNPNWV 224
V++ F + + +W
Sbjct: 242 VLEYVVFEKQLTNPYGSWR 260
>gi|27380918|ref|NP_772447.1| hypothetical protein bll5807 [Bradyrhizobium japonicum USDA 110]
gi|27354084|dbj|BAC51072.1| bll5807 [Bradyrhizobium japonicum USDA 110]
Length = 333
Score = 80.7 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 67/224 (29%), Gaps = 26/224 (11%)
Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
S +++ + FV +L S + + + +
Sbjct: 133 SSILGLIIQIVLVVFVV-RL------------AMSWWQRRHTPQAAYANADAGSGPGPQT 179
Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
L G N +I V D + F + ++ V +
Sbjct: 180 SYRSGLGGGLGGFGFGANNAPLEIKPV----DYEAF----ERLLGDVQTAWSNEDVAKLH 231
Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
L + F L ++ K + V + + A E T Y T+ +
Sbjct: 232 TLATPEMVSYFEQDLGQNRARNVVNKVTNVKLLQGDLAEAWREGETDYATVALRFALTDK 291
Query: 188 SYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ D++ +++ E G+V ++WTF R W L + +
Sbjct: 292 TLDRNTGAVVAGS-EQPGEVTEVWTFARR---PGGTWELSAIQQ 331
>gi|195158248|ref|XP_002020004.1| GL13752 [Drosophila persimilis]
gi|194116773|gb|EDW38816.1| GL13752 [Drosophila persimilis]
Length = 352
Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/205 (20%), Positives = 74/205 (36%), Gaps = 13/205 (6%)
Query: 28 RGVLGKKTGNEKPFS-----GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82
RGVL + E+PF G F ++ II+ K+K E +
Sbjct: 85 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISSSGAKQK------LEFLEKKS 138
Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
+ +R I S F F EA+ Y A + + I + V R Y + ++
Sbjct: 139 KSLIAVRKIRSYDESFSSDQFGAEAQEIYVAAHTLMAAKEKYKIREYVSERCYPEMMHNV 198
Query: 143 STRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
+ + + ++S + + E +T+R Q + A YD+ L+
Sbjct: 199 KDKTIHWRFLQSLEPPRVVHARCTEVITKENQFAQVTVRFHTQQMLAIYDRFGRLMHGSE 258
Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225
+ V++ F ++I W L
Sbjct: 259 ILTKDVLEYVVFEKHISNEYGKWRL 283
>gi|298489454|ref|ZP_07007465.1| putative membrane protein [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|298156028|gb|EFH97137.1| putative membrane protein [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|330890590|gb|EGH23251.1| Tim44-like domain-containing protein [Pseudomonas syringae pv. mori
str. 301020]
Length = 280
Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/232 (12%), Positives = 73/232 (31%), Gaps = 40/232 (17%)
Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58
+F+ F IL+ I F +F R + ++ + + + S + +
Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPYQRESSQPAQN 140
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
I G+ +++ F+ + FL AR ++++ +
Sbjct: 141 PI-------------------FGSSSPASAAPVINAPAWFNEERFLEAARGHFQSLQQHW 181
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
++ I + V ++ Q R +S+ + +++ + T+
Sbjct: 182 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTYIDNLQVQLDGVDDRADKTIATL 238
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G S+ +D + + W R + P W++ +
Sbjct: 239 TFSGVSKSSRFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 278
>gi|195112778|ref|XP_002000949.1| GI22249 [Drosophila mojavensis]
gi|193917543|gb|EDW16410.1| GI22249 [Drosophila mojavensis]
Length = 362
Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/205 (20%), Positives = 76/205 (37%), Gaps = 13/205 (6%)
Query: 28 RGVLGKKTGNEKPFS-----GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82
RGVL + E+PF G F ++ II+ K+K E +
Sbjct: 87 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISSSGAKQK------LEFLEKKS 140
Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
+ +R I S +F DF +A+ Y A + + I + V R Y + ++
Sbjct: 141 KSLMAIRKIRSYEENFSTDDFGAQAQEIYIAAHTHMAAKEKYKIREFVSERCYPEMMHNV 200
Query: 143 STRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
+ + + ++S + + E +T+R Q + A YD+ L+
Sbjct: 201 KDKTIHWRFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHTQQMLAIYDRFGRLMHGSE 260
Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225
+ V++ F ++I W L
Sbjct: 261 ILSKDVLEYVVFEKHISNEYGKWRL 285
>gi|34304322|ref|NP_115727.3| 39S ribosomal protein L45, mitochondrial precursor [Homo sapiens]
Length = 306
Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 2/139 (1%)
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
+R I +F KDF +A++ + + LV + D + +
Sbjct: 122 IRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKTV 181
Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
V+S + + IT+R+ + A YD+ L+ ++
Sbjct: 182 RWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKD 241
Query: 206 VIDIWTFVRNIPPSNPNWV 224
V++ F + + +W
Sbjct: 242 VLEYVVFEKQLTNPYGSWR 260
>gi|125773335|ref|XP_001357926.1| GA19976 [Drosophila pseudoobscura pseudoobscura]
gi|54637660|gb|EAL27062.1| GA19976 [Drosophila pseudoobscura pseudoobscura]
Length = 352
Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/205 (20%), Positives = 74/205 (36%), Gaps = 13/205 (6%)
Query: 28 RGVLGKKTGNEKPFS-----GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82
RGVL + E+PF G F ++ II+ K+K E +
Sbjct: 85 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISSSGAKQK------LEFLEKKS 138
Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
+ +R I S F F EA+ Y A + + I + V R Y + ++
Sbjct: 139 KSLIAVRKIRSYDESFSSDQFGAEAQEIYVAAHTLMAAKEKYKIREYVSERCYPEMMHNV 198
Query: 143 STRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
+ + + ++S + + E +T+R Q + A YD+ L+
Sbjct: 199 KDKTIHWRFLQSLEPPRVVHARCTEVITKENQFAQVTVRFHTQQMLAIYDRFGRLMHGSE 258
Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225
+ V++ F ++I W L
Sbjct: 259 ILTKDVLEYVVFEKHISNEYGKWRL 283
>gi|28872622|ref|NP_795241.1| hypothetical protein PSPTO_5517 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|302133167|ref|ZP_07259157.1| hypothetical protein PsyrptN_17334 [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|28855878|gb|AAO58936.1| conserved protein of unknown function [Pseudomonas syringae pv.
tomato str. DC3000]
gi|331017794|gb|EGH97850.1| hypothetical protein PLA106_17269 [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 280
Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/232 (11%), Positives = 74/232 (31%), Gaps = 40/232 (17%)
Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58
+F+ F IL+ I F +F R + ++ + + + + + +
Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPYQRETSQPAQN 140
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
I G+ +++ F+ + FL+ AR ++++ +
Sbjct: 141 PI-------------------FGSSSPASAAPVINAPAWFNEERFLDAARGHFQSLQQHW 181
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
++ I + V ++ Q R +S+ + +++ + T+
Sbjct: 182 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTFIDNLHVQLDGLDDRADKTIATL 238
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D + + W R + P W++ +
Sbjct: 239 TFSGVSKTSRFD-QGEV----------FSESWNMERPQGENQP-WLVAGIRQ 278
>gi|213968509|ref|ZP_03396652.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
gi|301384751|ref|ZP_07233169.1| hypothetical protein PsyrptM_19042 [Pseudomonas syringae pv. tomato
Max13]
gi|302062457|ref|ZP_07253998.1| hypothetical protein PsyrptK_20918 [Pseudomonas syringae pv. tomato
K40]
gi|213926797|gb|EEB60349.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
Length = 280
Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/232 (11%), Positives = 74/232 (31%), Gaps = 40/232 (17%)
Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58
+F+ F IL+ I F +F R + ++ + + + + + +
Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPYQRETSQPAQN 140
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
I G+ +++ F+ + FL+ AR ++++ +
Sbjct: 141 PI-------------------FGSSSPASAAPVINAPAWFNEERFLDAARGHFQSLQQHW 181
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
++ I + V ++ Q R +S+ + +++ + T+
Sbjct: 182 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTFIDNLHVQLDGLDDRADKTIATL 238
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D + + W R + P W++ +
Sbjct: 239 TFSGVSKTSRFD-QGEV----------FSESWNMERPQGENQP-WLVAGIRQ 278
>gi|303327521|ref|ZP_07357962.1| Tim44 domain protein [Desulfovibrio sp. 3_1_syn3]
gi|302862461|gb|EFL85394.1| Tim44 domain protein [Desulfovibrio sp. 3_1_syn3]
Length = 310
Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/229 (13%), Positives = 71/229 (31%), Gaps = 24/229 (10%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFS-----KRDERGIITLGKG 65
I++ + F+ L+L + +G + + D + +
Sbjct: 99 MDIIIIGLL-VFLGLKLFARFRNRQAPAPAGAGAQGASTMGGLHGDLREDSASSQGMRRD 157
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVY--TDFDPKDFLNEARNSYEAIVDSFFEGKV 123
D + G + SV FD +FL A+ +Y + +S+ + +
Sbjct: 158 NAAAGWDVLRNAPQGGAGQAQAFDAAPSVDVPQGFDVDEFLRGAKMAYSRLQNSWDKRDL 217
Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
I + V + L E ++ V + + +++ + + +
Sbjct: 218 DDIAQFATPAVLDAVREQLE----AEPTPSTTEVLLVNAQLLGVENDGDEQRAQVFFDVL 273
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
S D + V ++W FVR I +W L + +
Sbjct: 274 MRE----------SPDQQAPSSVREVWHFVRPIA--GGSWKLDGIQQVD 310
>gi|225707976|gb|ACO09834.1| 39S ribosomal protein L45, mitochondrial precursor [Osmerus mordax]
Length = 315
Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/194 (17%), Positives = 57/194 (29%), Gaps = 2/194 (1%)
Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93
K + VF + K+ L E +R I
Sbjct: 73 KQEYMERAINIACTAGVFDPYIPPEGDSRLSSLSKEGLKQRTEQIRQSAASQLAVRKIKE 132
Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153
T F K+F A+ Y ++ + + LV R Y + + + V+
Sbjct: 133 HDTTFTTKEFPGHAQGIYIEAHNALTQFNKEKLHSLVTERCYPEMTRANRYKTLRWTFVE 192
Query: 154 SSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWT 211
S + S +T+RI + A YD+ L+ E V++
Sbjct: 193 SLEPPKVVHARCPEMVSKGNLYGQVTLRIHSRQTLAIYDRFGRLMLGSEEEPKDVLEYLV 252
Query: 212 FVRNIPPSNPNWVL 225
R++ W L
Sbjct: 253 LERHLINPYGRWRL 266
>gi|195331089|ref|XP_002032235.1| GM26453 [Drosophila sechellia]
gi|194121178|gb|EDW43221.1| GM26453 [Drosophila sechellia]
Length = 362
Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/205 (20%), Positives = 74/205 (36%), Gaps = 13/205 (6%)
Query: 28 RGVLGKKTGNEKPFS-----GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82
RGVL + E+PF G F ++ II+ K+K E +
Sbjct: 94 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQK------FEFLEKKS 147
Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
+ +R I S +F DF EA++ Y + I + V R Y + ++
Sbjct: 148 KSLMAVRKIRSYDENFRSDDFGAEAQDIYIQAHTHMAAKDKYKIREFVSERCYPEMMHNV 207
Query: 143 STRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
+ K ++S + + E +T+R Q + A YD+ L+
Sbjct: 208 KDKTIRWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLMHGSE 267
Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225
I V++ F ++I W L
Sbjct: 268 IITKDVLEYVVFEKHISNEYGKWRL 292
>gi|254693967|ref|ZP_05155795.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 3 str. Tulya]
Length = 134
Score = 80.4 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 4/130 (3%)
Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163
L+ I + A+ KL + L S K + V +
Sbjct: 8 LDRFEQMLVDIQGGYGREDYAALRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGD 67
Query: 164 IINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222
+ A E N Y T+ + I D+ ++ +P + +++WTF R
Sbjct: 68 VSEAWREGNVEYATVAMRYSAIDVVVDRTSGAVVEGNPNEPVESVELWTFTR---TDGGA 124
Query: 223 WVLISTKLGE 232
W L + + E
Sbjct: 125 WQLAAIQGTE 134
>gi|289740307|gb|ADD18901.1| mitochondrial ribosomal protein L45 [Glossina morsitans morsitans]
Length = 355
Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 13/205 (6%)
Query: 28 RGVLGKKTGNEKPFS-----GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82
RGVL + E+PF G F +R II+ K+K +
Sbjct: 82 RGVLPPRPWLERPFHISCTGGIFEPYVPPEGDGKRSIISAAGAKQK------FVFLEKKS 135
Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
+ +R I + DF DF A++ Y + H + +LV R Y + ++
Sbjct: 136 KSMLAVRKIRNYEEDFSTDDFAAAAQDVYIGAHQTMALKDKHKLRELVTERCYPEIMHNV 195
Query: 143 STRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
+ + +KS + S E IT+R Q + A YD+ L+
Sbjct: 196 RDKTIHWSFLKSLEPPYVVHARVTDVISKENLFAQITVRFHTQQLLAIYDRFGRLMHGSE 255
Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225
+ V++ F ++I W L
Sbjct: 256 IVAKDVLEYAVFEKHISNEYGKWRL 280
>gi|145349615|ref|XP_001419224.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579455|gb|ABO97517.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 221
Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/209 (15%), Positives = 52/209 (24%), Gaps = 15/209 (7%)
Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93
+ G + + R E + +
Sbjct: 2 RGGGVRVAQTSSNLIAEPYAGPPRRPTLAEWATTSKGWRYAYEAATSRAKDAYALSKCAK 61
Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKV-----HAIEKLVDSRVYQDFNDSLSTRKSN 148
F + F EA+ Y+ I S H + D +R+
Sbjct: 62 EVRGFTLEGFKQEAKQMYKMINASSANVGHGKTLEHETRHATTDKTQSDLKRERKSRERG 121
Query: 149 EKNVKSSLVGIDDMKII----------NASIEENTVYITIRIVGQFISASYDKDNLLISS 198
+ D + N S +T R G+ A+YD L++
Sbjct: 122 GWARVDWNLESIDECQVVRGRLIMANANDSNGPGFAQLTTRFRGKQRFAAYDARGRLVAG 181
Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
DP+ V D W F + N W L
Sbjct: 182 DPDEILDVEDFWVFEHGLKIPNARWRLAG 210
>gi|195444564|ref|XP_002069925.1| GK11306 [Drosophila willistoni]
gi|194166010|gb|EDW80911.1| GK11306 [Drosophila willistoni]
Length = 337
Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 35/200 (17%), Positives = 68/200 (34%), Gaps = 3/200 (1%)
Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87
RGVL + E+PF +G + E ++
Sbjct: 78 RGVLPPRPWMERPFHISCTGGIFEAYVP-PEGDGKKSLISSSGAKQKLEFLEKKSKSLMA 136
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
+R I S F +F + A+ Y A + + I + V R Y + ++ +
Sbjct: 137 VRKIRSYEESFSTDEFGDHAQEIYIAAHTHMAAREKYKIREFVSERCYPEMMHNVKDKTI 196
Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
+ + ++S + + E +T+R Q + A YD+ L+ +
Sbjct: 197 HWRFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHTQQMLAIYDRFGRLMHGSEILTKD 256
Query: 206 VIDIWTFVRNIPPSNPNWVL 225
V++ F ++I W L
Sbjct: 257 VLEYVVFEKHISNEYGKWRL 276
>gi|29611869|sp|Q9BRJ2|RM45_HUMAN RecName: Full=39S ribosomal protein L45, mitochondrial;
Short=L45mt; Short=MRP-L45; Flags: Precursor
gi|120660040|gb|AAI30383.1| Mitochondrial ribosomal protein L45 [Homo sapiens]
gi|120660352|gb|AAI30385.1| Mitochondrial ribosomal protein L45 [Homo sapiens]
gi|313883266|gb|ADR83119.1| mitochondrial ribosomal protein L45 [synthetic construct]
Length = 306
Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 2/139 (1%)
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
+R I +F KDF +A++ + + LV + D + +
Sbjct: 122 IRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKTV 181
Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
V+S + + IT+R+ + A YD+ L+ ++
Sbjct: 182 RWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKD 241
Query: 206 VIDIWTFVRNIPPSNPNWV 224
V++ F + + +W
Sbjct: 242 VLEYVVFEKQLTNPYGSWR 260
>gi|297836804|ref|XP_002886284.1| mitochondrial import inner membrane translocase subunit TIM44
[Arabidopsis lyrata subsp. lyrata]
gi|297332124|gb|EFH62543.1| mitochondrial import inner membrane translocase subunit TIM44
[Arabidopsis lyrata subsp. lyrata]
Length = 477
Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 6/193 (3%)
Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100
S K D R I + +NE+F T ++I + F
Sbjct: 275 MSEPVVNKSQEIAEDVREIWETSDNPIVHKIQDMNEMFLKETDSASTYKEIRNRDPSFSL 334
Query: 101 KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160
DF E +++++ EG V ++K V + L+ +++ + L+ I
Sbjct: 335 PDFAAEIEEVIRPVLNAYSEGDVETLKKYCSKEVIERCTAELTAYQTHGFFFDNKLLHIS 394
Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS- 219
D+++ + ++ I + Q I D++ + + V W +
Sbjct: 395 DVRVSVTKMMGDSPIIIAKFQTQEIYCVRDENGEIQEGGQDTIHTVYHEWAMQQVEATEF 454
Query: 220 -----NPNWVLIS 227
P W L
Sbjct: 455 GEDAIYPIWRLRE 467
>gi|330952408|gb|EGH52668.1| Tim44-like domain-containing protein [Pseudomonas syringae Cit 7]
Length = 280
Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/232 (11%), Positives = 75/232 (32%), Gaps = 40/232 (17%)
Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58
+F+ F IL+ I F +F R + ++ + + + + + +
Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPYQRETSQPAQN 140
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
I G+ +++ F+ + FL+ AR ++++ +
Sbjct: 141 PI-------------------FGSSSPASAAPVINAPAWFNEQRFLDAARGHFQSLQQHW 181
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
++ I + V ++ Q R +S+ + ++++ + T+
Sbjct: 182 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTYIENLNVQLDGVDDRADKTIATL 238
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D + + W R + P W++ +
Sbjct: 239 TFSGVSKTSRFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 278
>gi|307109340|gb|EFN57578.1| hypothetical protein CHLNCDRAFT_51139 [Chlorella variabilis]
Length = 395
Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/230 (16%), Positives = 64/230 (27%), Gaps = 28/230 (12%)
Query: 26 QLRGVLGKK---TGNEKPFSGFFSGKY----------VFSKRDERGIITLGKGKKKDNLD 72
+ +G K +G P + + R L
Sbjct: 75 RGYAKMGTKMPHSGYNPPADMNKAMQMRLSMVSPNLLAEPYRGVPPPQPLTSYFTIRGWK 134
Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
+ + + F+ F E+ Y I +G+ ++ +LV
Sbjct: 135 ERWQRTLSQFKSMYTLAKCKKYVPGFNRNAFKQESLELYRDICRLLAQGERGSLRQLVTP 194
Query: 133 RVYQDFNDSLSTRK--------------SNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
V+ D L R+ + + V + I +T+
Sbjct: 195 AVFSDMKRQLKQREDPAAGRACSGTSSGWEPTVDELTTVHGRLIMINPKDETSGFAQLTV 254
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN-WVLIS 227
RI A+YDK L++ DPE V D W F S N W L
Sbjct: 255 RIPSAQRFAAYDKAGKLVAGDPEQSIDVEDYWVFEHAFKASPANRWRLAG 304
>gi|85715641|ref|ZP_01046621.1| hypothetical protein NB311A_18371 [Nitrobacter sp. Nb-311A]
gi|85697580|gb|EAQ35457.1| hypothetical protein NB311A_18371 [Nitrobacter sp. Nb-311A]
Length = 330
Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/179 (14%), Positives = 51/179 (28%), Gaps = 9/179 (5%)
Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
+R + G + T D + F
Sbjct: 159 QRRNAPAYAGPTPGPTSGPAAAQTNARSGLGFGSMANAAPLEITQEDYEAF----ERLLG 214
Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
I ++ V+ + L + F + L + K S V + + A E
Sbjct: 215 EIQTAWSNEDVNTLHALATPEMVSYFTEDLQANDARGVVNKVSDVKLLQGDLAEAWREGM 274
Query: 173 TVYITIRIVGQFISASYDKDN-LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
T Y T+ + I + ++ ++ + + D+WTF R W L + +
Sbjct: 275 TDYATVALRYSLIDKTIERAGGRIVEGS-DQPQEATDVWTFARR---GGGKWELSAIQQ 329
>gi|150397061|ref|YP_001327528.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
medicae WSM419]
gi|150028576|gb|ABR60693.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
medicae WSM419]
Length = 333
Score = 80.0 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/197 (13%), Positives = 59/197 (29%), Gaps = 10/197 (5%)
Query: 37 NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT 96
N++P S S + + P +I
Sbjct: 145 NQRPAYSAPSATARTSATAGNPPSFRIPRIGEAVGSAAAPRSPAAAPAYGGGEEISVGQD 204
Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
D D + + ++ A+ +L + LS + +
Sbjct: 205 DLDR------FETMLKGVQAAYGAEDYAALRRLTTPEAMSYLAEELSDNATKGLKNEVRD 258
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRN 215
V + + A + Y T+ + + + D+ ++S D + + ++IWTFVR
Sbjct: 259 VHLVQGDLAEAWRGDGRDYATVAMRYESVDVMRDRATGDVVSGDADRPTEAVEIWTFVRR 318
Query: 216 IPPSNPNWVLISTKLGE 232
+W + + + E
Sbjct: 319 ---PGADWQVSAIQGVE 332
>gi|91806216|gb|ABE65836.1| mitochondrial import inner membrane translocase subunit TIM44
[Arabidopsis thaliana]
Length = 474
Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 31/193 (16%), Positives = 62/193 (32%), Gaps = 6/193 (3%)
Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100
S K D R I + +NE F T ++I S F
Sbjct: 272 MSEPVVNKSQEIAEDVREIWETSDNPIVHKIQDMNEKFLKETDSASTYKEIRSRDPSFSL 331
Query: 101 KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160
DF E + +++++ EG V ++K V + + +++ + L+ I
Sbjct: 332 PDFAAEIEEVIKPVLNAYSEGDVETLKKYCSKEVIERCTAERTAYQTHGVLFDNKLLHIS 391
Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS- 219
++ + + ++ I + Q I D++ + + V W +
Sbjct: 392 EVSVSVTKMMGDSPIIIAKFQTQEIYCVRDENGEIQEGGQDTIHTVYHEWAMQQVETTEL 451
Query: 220 -----NPNWVLIS 227
P W L
Sbjct: 452 GEDAIYPIWRLRE 464
>gi|303284301|ref|XP_003061441.1| mitochondrial protein translocase family [Micromonas pusilla
CCMP1545]
gi|226456771|gb|EEH54071.1| mitochondrial protein translocase family [Micromonas pusilla
CCMP1545]
Length = 289
Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/211 (16%), Positives = 78/211 (36%), Gaps = 13/211 (6%)
Query: 27 LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNK 86
L V K G ++ + + + R+ K + + F T +
Sbjct: 71 LTSVFSKLQGLKRTPAYQKTEDALEDLRERWETSENPMVHK---IQDSVDGFFQETEQGE 127
Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE-KLVDSRVYQDFNDSLSTR 145
R I + F+ DFL E R I+ ++ +G V A+ V + + + + +
Sbjct: 128 AYRAIRARAPTFNINDFLAEVRRDVPKILGAYLKGDVDALAMTNVSNEMMERMSGQMRAW 187
Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
++ +K V ++ + D++++ + E + + Q I+ D +++ +
Sbjct: 188 EAEQKFVDPRVLHLGDVELVETRMMEGAPLVVTQFQCQQINCVRDASGVIVEGAEDDIQA 247
Query: 206 VIDIWTFV---RNIPPSN------PNWVLIS 227
V +W + + ++ P WVL
Sbjct: 248 VHYLWAMQLVDKELVAADGRKYVAPTWVLRE 278
>gi|241999542|ref|XP_002434414.1| conserved hypothetical protein [Ixodes scapularis]
gi|215497744|gb|EEC07238.1| conserved hypothetical protein [Ixodes scapularis]
Length = 333
Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/200 (17%), Positives = 71/200 (35%), Gaps = 3/200 (1%)
Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87
+GV + E+P SG G + ++ + + L G + V
Sbjct: 80 KGVAPGRVWMERPIYTSCSGGLFDPYVPPEGDGKMSLLSQEGAMQRMRRLEKKGRSVMNV 139
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
R I S DF +F +A+ Y + + E + +LV Y + ++ +
Sbjct: 140 -RKIRSYEDDFHLAEFAEQAQQIYIDVHRALAEKNKDKLHELVTENCYPELMQNVVNKTL 198
Query: 148 NEKNVKSSLV--GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
+ +KS + S + +T+R+ Q A YD+ L+ +
Sbjct: 199 RWQFIKSLEPPRAVHVRCEDLISKDNMFGQVTVRMHTQQTLAVYDRFGRLMHGSEVMAKD 258
Query: 206 VIDIWTFVRNIPPSNPNWVL 225
V++ F +++ W +
Sbjct: 259 VLEYVVFEKHLSDLYGTWRV 278
>gi|195395288|ref|XP_002056268.1| GJ10851 [Drosophila virilis]
gi|194142977|gb|EDW59380.1| GJ10851 [Drosophila virilis]
Length = 362
Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/200 (17%), Positives = 69/200 (34%), Gaps = 3/200 (1%)
Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87
RGVL + E+PF +G + E ++
Sbjct: 88 RGVLPPRPWMERPFHISCTGGIFEAYVP-PEGDGKKSIISSSGTKQKLEFLEKKSKSLMA 146
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
+R I + +F DF +A+ Y A + + I + V R Y + ++ +
Sbjct: 147 VRKIRAYEENFSSDDFGVQAQEIYIAAHTHMAAKEKYKIREFVSERCYPEMMHNVKDKTI 206
Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
+ + ++S + + E +T+R Q + A YD+ L+ +
Sbjct: 207 HWRFLQSLEPPRVVHARVTEVITKENLFAQVTVRFHTQQMLAIYDRFGRLMHGSEIVTKD 266
Query: 206 VIDIWTFVRNIPPSNPNWVL 225
V++ F ++I W L
Sbjct: 267 VLEYVVFEKHISNEYGKWRL 286
>gi|18399377|ref|NP_565473.1| ATTIM44-1; protein-transmembrane transporting ATPase [Arabidopsis
thaliana]
gi|20198086|gb|AAD25651.2| putative mitochondrial inner membrane translocating protein
[Arabidopsis thaliana]
gi|330251926|gb|AEC07020.1| translocase inner membrane subunit 44-1 [Arabidopsis thaliana]
Length = 472
Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 31/193 (16%), Positives = 62/193 (32%), Gaps = 6/193 (3%)
Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDP 100
S K D R I + +NE F T ++I S F
Sbjct: 270 MSEPVVNKSQEIAEDVREIWETSDNPIVHKIQDMNEKFLKETDSASTYKEIRSRDPSFSL 329
Query: 101 KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID 160
DF E + +++++ EG V ++K V + + +++ + L+ I
Sbjct: 330 PDFAAEIEEVIKPVLNAYSEGDVETLKKYCSKEVIERCTAERTAYQTHGVLFDNKLLHIS 389
Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS- 219
++ + + ++ I + Q I D++ + + V W +
Sbjct: 390 EVSVSVTKMMGDSPIIIAKFQTQEIYCVRDENGEIQEGGQDTIHTVYHEWAMQQVETTEL 449
Query: 220 -----NPNWVLIS 227
P W L
Sbjct: 450 GEDAIYPIWRLRE 462
>gi|73960044|ref|XP_855187.1| PREDICTED: similar to 39S ribosomal protein L45, mitochondrial
precursor (L45mt) (MRP-L45) [Canis familiaris]
Length = 213
Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 51/141 (36%), Gaps = 6/141 (4%)
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
+R I +F KDF +A++ + + LV + D + +
Sbjct: 42 IRKIREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIKYKMV 101
Query: 148 NEKNVK----SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203
+ V+ +V + ++N +T+R + A YD+ L+ ++
Sbjct: 102 HWSFVESLEPPQVVQVCCSNLLN--QGNIYSQVTVRKHTRQTLAIYDRFGRLMYGQEDVP 159
Query: 204 GKVIDIWTFVRNIPPSNPNWV 224
V++ F +++ +W
Sbjct: 160 RDVLEYVVFEKHLVNPYGSWR 180
>gi|194746347|ref|XP_001955642.1| GF18867 [Drosophila ananassae]
gi|190628679|gb|EDV44203.1| GF18867 [Drosophila ananassae]
Length = 360
Score = 80.0 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/205 (19%), Positives = 72/205 (35%), Gaps = 13/205 (6%)
Query: 28 RGVLGKKTGNEKPFS-----GFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGT 82
RGVL + E+PF G F ++ II+ K+K E +
Sbjct: 92 RGVLPPRPWMERPFHISCTGGIFEAYVPPEGDGKKSIISSSGAKQK------LEFLEKKS 145
Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
+ +R I S F +F EA+ Y + I + V R Y + ++
Sbjct: 146 KSLMAVRKIRSYEESFSSDEFGAEAQEIYIKAHQHMAAKDKYQIREYVSERCYPEMMHNV 205
Query: 143 STRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
+ + ++S + + E +T+R Q + A YD+ L+
Sbjct: 206 KDKTIRWRFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLMHGSE 265
Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVL 225
+ V++ F ++I W L
Sbjct: 266 ILTKDVLEYVVFEKHISNEYGKWRL 290
>gi|146341888|ref|YP_001206936.1| putative signal peptide [Bradyrhizobium sp. ORS278]
gi|146194694|emb|CAL78719.1| conserved hypothetical protein; putative signal peptide
[Bradyrhizobium sp. ORS278]
Length = 324
Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 21/181 (11%), Positives = 50/181 (27%), Gaps = 5/181 (2%)
Query: 52 SKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY 111
+R++ + D S +
Sbjct: 147 QRRNQPAYASGPTPGPNDGQQSFRSGLSGLGGGFGGFGGGSNQPPLQIQPADYEAFERLL 206
Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171
I ++ V + L + F L ++ K + V + + + E
Sbjct: 207 GEIQSAWSNEDVGRLRLLSTPEMASYFERDLEQNQARGVVNKVTGVKLLQGDLAESWREN 266
Query: 172 NTVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
Y T+ + + ++ ++ + +V +IWTF+R+ W L + +
Sbjct: 267 GADYATVAMRFTLADKTIERASGRVVEGS-DQPQEVTEIWTFLRHPGAD---WQLSAIQQ 322
Query: 231 G 231
Sbjct: 323 V 323
>gi|330964447|gb|EGH64707.1| Tim44-like domain-containing protein [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 281
Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/232 (11%), Positives = 75/232 (32%), Gaps = 40/232 (17%)
Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58
+F+ F IL+ I F +F R + ++ + + + + + +
Sbjct: 85 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPYQRETSQPAQN 141
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
I G+ +++ F+ + FL+ AR ++++ +
Sbjct: 142 PI-------------------FGSSSPASAAPVINAPAWFNEERFLDAARGHFQSLQQHW 182
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
++ I + V ++ Q R +S+ + ++++ + T+
Sbjct: 183 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTYIENLNVQLDGVDDRADKTIATL 239
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D + + W R + P W++ +
Sbjct: 240 TFSGVSKTSRFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 279
>gi|254689480|ref|ZP_05152734.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 6 str. 870]
gi|256257728|ref|ZP_05463264.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 9 str. C68]
Length = 134
Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 4/130 (3%)
Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163
L+ I + A+ KL + L S K + V +
Sbjct: 8 LDRFEQMLVDIQGGYGREDYAALRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGD 67
Query: 164 IINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222
+ A E N Y T+ + I D+ ++ +P + +++WTF R
Sbjct: 68 VSEAWREGNVEYATVAMRYSAIDVMVDRTSGAVVEGNPNEPVESVELWTFTR---TDGGA 124
Query: 223 WVLISTKLGE 232
W L + + E
Sbjct: 125 WQLAAIQGTE 134
>gi|257094387|ref|YP_003168028.1| import inner membrane translocase subunit Tim44 [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257046911|gb|ACV36099.1| import inner membrane translocase subunit Tim44 [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 300
Score = 79.6 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/223 (12%), Positives = 71/223 (31%), Gaps = 30/223 (13%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
+L+ A + F V+ ++ ++P G + G + +
Sbjct: 108 MIGLLVVAVMVAIGF-----VMRRRAAAQQPALAGAGGFQYAAPDALNGGMARVEAGP-- 160
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+ + ++ DFD + F+ A+ S+ + + G + I +
Sbjct: 161 --------SMPAGTSTEAVTAGGNIPADFDVEGFVRNAKISFIRLQAANDAGNLDDIREF 212
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+ F + + + V D ++++ + EE+ +++R
Sbjct: 213 TTPEM---FAEVRMNIADRGPVAQETDVVSIDAQVLDVAEEESRYLVSVRF--------- 260
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
L+ V +IW ++ + WVL + +
Sbjct: 261 --TGLIREDKAAAPEPVDEIWHLIKPRDGKSG-WVLAGIQQVQ 300
>gi|90423037|ref|YP_531407.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
palustris BisB18]
gi|90105051|gb|ABD87088.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
palustris BisB18]
Length = 332
Score = 79.6 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/186 (15%), Positives = 54/186 (29%), Gaps = 9/186 (4%)
Query: 46 SGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLN 105
+ + G D + + G+ D + F
Sbjct: 153 QRRNAAAPAAASASAYAGPAAGPDVGPGAQQNYRTGSGFGIGATAAPLEIGPADYEAF-- 210
Query: 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKII 165
I ++ G V + L + F+ L+ K+ K S V + +
Sbjct: 211 --EKLLSEIQTTWSNGDVGHLHTLATPEMVSYFSGDLAANKARGVENKVSDVKLLQGDLA 268
Query: 166 NASIEENTVYITIRIVGQFISASYD-KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
A E T Y ++ + + + D L+ E + ++WTF R W
Sbjct: 269 EAWREGETDYASVAMRFSLVDKTIDTATGKLVEGS-EQPTEATEVWTFARRRGSE---WE 324
Query: 225 LISTKL 230
L + +
Sbjct: 325 LSAIQQ 330
>gi|33591411|ref|NP_879055.1| hypothetical protein BP0162 [Bordetella pertussis Tohama I]
gi|33571053|emb|CAE40541.1| putative membrane protein [Bordetella pertussis Tohama I]
Length = 340
Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 32/231 (13%), Positives = 73/231 (31%), Gaps = 20/231 (8%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKK--TGNEKPFSGFFSGKYVFSKRDERGII 60
F + + LI L F F+ +LRG ++ G G G+ +
Sbjct: 120 FAEFMASMLLIALVVFAVIFIVRRLRGGAPRQAMQGAYGAAGGNRPGQPSQQPMWRESLN 179
Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRD-IVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ + L K D + DFD FL +A++ + I +
Sbjct: 180 PAPAQQPAAAPVAAAAPAAAAAALPKAGDDGNWFIPGDFDTPRFLQQAKDQFVRIQGIWD 239
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
G+V ++ + + + L R + V + + +++ + ++R
Sbjct: 240 SGEVESLRDFLTDDLISELKPQLEAR---GAAANKTEVVLLNAELLGIETVSDGHLASVR 296
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+L + + ++W + ++ W+L +
Sbjct: 297 F-----------SGMLREAPGTEAFRFEEVWNLFKP---ADGGWLLAGIQQ 333
>gi|33598497|ref|NP_886140.1| hypothetical protein BPP3994 [Bordetella parapertussis 12822]
gi|33574626|emb|CAE39277.1| putative membrane protein [Bordetella parapertussis]
Length = 340
Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 32/231 (13%), Positives = 73/231 (31%), Gaps = 20/231 (8%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKK--TGNEKPFSGFFSGKYVFSKRDERGII 60
F + + LI L F F+ +LRG ++ G G G+ +
Sbjct: 120 FAEFMASMLLIALVVFAVIFIVRRLRGGAPRQAMQGAYGAAGGNRPGQPSQQPMWRESLN 179
Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRD-IVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ + L K D + DFD FL +A++ + I +
Sbjct: 180 PAPAQQPAAAPVAAAAPAAAAAALPKAGDDGNWFIPGDFDTPRFLQQAKDQFVRIQGIWD 239
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
G+V ++ + + + L R + V + + +++ + ++R
Sbjct: 240 SGEVESLRDFLTDDLISELKPQLEAR---GAAANKTEVVLLNAELLGIETVSDGHLASVR 296
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+L + + ++W + ++ W+L +
Sbjct: 297 F-----------SGMLREAPGTEAFRFEEVWNLFKP---ADGGWLLAGIQQ 333
>gi|300692535|ref|YP_003753530.1| hypothetical protein RPSI07_2910 [Ralstonia solanacearum PSI07]
gi|299079595|emb|CBJ52273.1| conserved membrane protein of unknown function [Ralstonia
solanacearum PSI07]
Length = 345
Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/246 (11%), Positives = 64/246 (26%), Gaps = 41/246 (16%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKT-------------GNEKPFSGFFSGKYVFSKRDERGI 59
++L A I F V +R + G + G+ +P+ +
Sbjct: 115 LILIAIIAFVVMWIIRKLRGSRPQEPAYATGGPSLGGDREPYVPSPAVPAAQPAAPVASS 174
Query: 60 ITLGKGKKKDNLD-------------SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNE 106
I G L + V DFD + FL
Sbjct: 175 IDTGSTGSTSGLGAGAQTAAQAWSLGGPAAPTANAPVAAPASQQPWGVPADFDTQAFLRN 234
Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN 166
A+ + + ++ ++ I + + F + + V + +++
Sbjct: 235 AKVYFIRLQAAWDTANLNDIREFTTPEM---FAEIKMDLADRGTAPNKTDVVSVEAELLG 291
Query: 167 ASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226
++R ++ ++W + I + WVL
Sbjct: 292 IETSPTEYLASVRF-----------AGMIREEANAPAQPFAEVWNLTKPI-QGSGGWVLA 339
Query: 227 STKLGE 232
+ +
Sbjct: 340 GIQQLQ 345
>gi|47077699|dbj|BAD18730.1| unnamed protein product [Homo sapiens]
Length = 306
Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 2/139 (1%)
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
+R I +F KDF +A++ + + LV + D + +
Sbjct: 122 IRRIKDYDANFKIKDFPGKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKTV 181
Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
V+S + + IT+R+ + A YD+ L+ ++
Sbjct: 182 RWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKD 241
Query: 206 VIDIWTFVRNIPPSNPNWV 224
V++ F + + +W
Sbjct: 242 VLEYVVFEKQLTNPYGSWR 260
>gi|312797306|ref|YP_004030228.1| hypothetical protein RBRH_02101 [Burkholderia rhizoxinica HKI 454]
gi|312169081|emb|CBW76084.1| Hypothetical protein RBRH_02101 [Burkholderia rhizoxinica HKI 454]
Length = 367
Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 34/229 (14%), Positives = 72/229 (31%), Gaps = 26/229 (11%)
Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKT------GNEKPFSGFFSGKYVFSKRDERGIIT 61
S LI L A + ++F + + G E P + + T
Sbjct: 157 SNVILIALVALVGLWLFRKFANRNARPATAYAHGGFESPSGASLRQYDASAAAPSQLPAT 216
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
G G+ D + + + L D+ +V FD F+ +A+ ++ + ++ G
Sbjct: 217 GGMGQAGVAPDGQSRVAADPSVL-----DVPAVPAGFDADAFIRQAKVAFVRLQAAWDAG 271
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
+ I + ++ + +R + +V ++ + N ++R
Sbjct: 272 NLDDIREFTTPEMFAEIKLDFDSRHGENRTD---VVQLNADLVGVEDRGGNEYVASVRFH 328
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
LL + ++W RN WVL +
Sbjct: 329 -----------GLLRETQGAAAEPFAEMWNLSRNARSGEG-WVLAGIQQ 365
>gi|297538333|ref|YP_003674102.1| import inner membrane translocase subunit Tim44 [Methylotenera sp.
301]
gi|297257680|gb|ADI29525.1| import inner membrane translocase subunit Tim44 [Methylotenera sp.
301]
Length = 290
Score = 78.8 bits (192), Expect = 5e-13, Method: Composition-based stats.
Identities = 25/218 (11%), Positives = 62/218 (28%), Gaps = 27/218 (12%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
+L A + V + L +KP + + +
Sbjct: 96 TILMALLAAGVVMFLIS------KFKKPQPANNFNPSTVMQYAGESAYNAQDSQSQA--- 146
Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
G N ++ +F F+ A+ S+ + + + I +
Sbjct: 147 ---RSGASGFGANAANSINSNIPPNFPVDSFIRSAKASFIRLQAANDNKDSNDIREYTTP 203
Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
V F + + V+ + V +++ + + ++R GQ
Sbjct: 204 EV---FAEITMQMQERGNAVQKTEVIAIQAELLEVNDDAVFSVASVRFTGQL-------- 252
Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
S + + ++W +++ N W+L +
Sbjct: 253 ----SENNGTPENIDEVWHIQKHLHDENAKWLLAGIQQ 286
>gi|296157950|ref|ZP_06840783.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
Ch1-1]
gi|295891718|gb|EFG71503.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
Ch1-1]
Length = 320
Score = 78.8 bits (192), Expect = 5e-13, Method: Composition-based stats.
Identities = 22/229 (9%), Positives = 64/229 (27%), Gaps = 23/229 (10%)
Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
+M S ++ + + + + ++ + + +
Sbjct: 114 AQMLSNAL-LIGLVVVAGVMLFRF--IANRRR---PDLAYGHGSANRQQTNGSPFLNQVR 167
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
+ + NL T ++ D FL A+ + + ++ +
Sbjct: 168 EARPDTNLRDWPRAAMGTTGAAGSVKAP--EPALADQAAFLVSAKAMFMRLQGAWDRNEQ 225
Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
+ +L + F + + V D +++ + +++R
Sbjct: 226 GDLFELTTPEM---FMRLKQDLEHRGHEPSRTDVTQLDAEVLGTESNADETLVSVRFY-- 280
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ D +I +IW VR++ + W L + +
Sbjct: 281 ---------GQMREDDAQIAQPFQEIWNMVRSV-HGDEGWRLAGIQQID 319
>gi|298205045|emb|CBI34352.3| unnamed protein product [Vitis vinifera]
Length = 196
Score = 78.8 bits (192), Expect = 5e-13, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 9/154 (5%)
Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
L + + F EA + Y+ I ++ K V +Y + +
Sbjct: 39 ELKSAYAVAKLRKIGYSRQKFYTEAVDLYKEINSQIANSAKASLRKSVTENMYSALKNEI 98
Query: 143 STRKSNEKNVKSSLVGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
R+S V +V + I + + + +T+ + + +YD
Sbjct: 99 KQRESKWHKVYWEMVEPVVKIRTLRARMISIDRNDMNKAFIQLTLEFLTKQKFEAYDSKG 158
Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
+++ D + V D+W F R++ W L
Sbjct: 159 CVVAGDKDKEVLVRDVWVFERSLFHPGAYWRLCG 192
>gi|219884429|gb|ACL52589.1| unknown [Zea mays]
Length = 303
Score = 78.8 bits (192), Expect = 5e-13, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 54/140 (38%), Gaps = 9/140 (6%)
Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
+ F ++A Y+ + G ++ +++ R++ + L R+S +V L
Sbjct: 160 GYTKNQFYDQALKIYKEVNTLMAHGDTSSLREILTERMHSTIKNELKRRQSMWNSVHWEL 219
Query: 157 VGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
V + + +++ + +T+ V + +Y+ ++S D V
Sbjct: 220 VEPAVSIRTLRARMIGLDKNDLDKAFIQLTLEFVTKQKFEAYNSKGAVVSGDKSKEVLVK 279
Query: 208 DIWTFVRNIPPSNPNWVLIS 227
DIW F R++ W +
Sbjct: 280 DIWVFERSLFHPGAYWRVCG 299
>gi|260884014|ref|ZP_05895628.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 9 str. C68]
gi|260873542|gb|EEX80611.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 9 str. C68]
Length = 139
Score = 78.8 bits (192), Expect = 5e-13, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 4/130 (3%)
Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163
L+ I + A+ KL + L S K + V +
Sbjct: 13 LDRFEQMLVDIQGGYGREDYAALRKLTTPEAMSYLAEELGEIASGGKRNEVKDVKLLQGD 72
Query: 164 IINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222
+ A E N Y T+ + I D+ ++ +P + +++WTF R
Sbjct: 73 VSEAWREGNVEYATVAMRYSAIDVMVDRTSGAVVEGNPNEPVESVELWTFTR---TDGGA 129
Query: 223 WVLISTKLGE 232
W L + + E
Sbjct: 130 WQLAAIQGTE 139
>gi|262369516|ref|ZP_06062844.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
gi|262315584|gb|EEY96623.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
Length = 321
Score = 78.8 bits (192), Expect = 5e-13, Method: Composition-based stats.
Identities = 24/221 (10%), Positives = 64/221 (28%), Gaps = 19/221 (8%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
ILL A + F + + KK S + F ++ +
Sbjct: 117 IWILLAAAVA-FFIFR-KMGAKKKVAANPYAPNNGSTQAPFGQQAAPRTSNDNSNIFGQS 174
Query: 71 LDSINELFPIGTRLNKVMRDI-VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+ + + +P FL AR + I + I++
Sbjct: 175 VGGSAATPQNNAPFGAAYTNSGSQLPDGTEPAAFLRIARQRFNHIQSMNTASNISEIQRY 234
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
+ +YQ + ++ + + + +++ E + +++R
Sbjct: 235 LTPDLYQSMYQDIM----ANQDQDVAEFSNLNAMVADSATENSQYVVSVRF--------- 281
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ + ++W FV+ + +W++ +
Sbjct: 282 --TGTVSEDLNSLPQPFAEVWHFVKPAGSTQ-DWLVAGIQQ 319
>gi|115920949|ref|XP_793386.2| PREDICTED: similar to MGC53772 protein [Strongylocentrotus
purpuratus]
gi|115935455|ref|XP_001189066.1| PREDICTED: similar to MGC53772 protein [Strongylocentrotus
purpuratus]
Length = 338
Score = 78.8 bits (192), Expect = 5e-13, Method: Composition-based stats.
Identities = 28/202 (13%), Positives = 59/202 (29%), Gaps = 5/202 (2%)
Query: 27 LRGVLGKKTG--NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRL 84
LR G + G ++ F + E
Sbjct: 83 LRNA-GIRPGQQYQERAITITCTGDFFEPYIPPEGDGKASSLTTEGAKQRLERVKNVGVT 141
Query: 85 NKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST 144
R I +F DF +A+ Y ++ + H + LV + Y +
Sbjct: 142 QMAQRKIRQFEPEFTTTDFAWKAQQIYVDAHNALQDFDRHLLHSLVTEKCYPEMIAGFRY 201
Query: 145 RKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI 202
+ K ++S + + +T+R + A YD+ ++ ++
Sbjct: 202 KTIRWKMLESIEKPRIVHMRCTDMINKGNIYGQVTVRFHTRQTLAIYDRFGRIMVGSEDV 261
Query: 203 FGKVIDIWTFVRNIPPSNPNWV 224
V++ F +++P W
Sbjct: 262 LKDVLEYVVFEKHLPHRYGTWR 283
>gi|66048290|ref|YP_238131.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
syringae pv. syringae B728a]
gi|63258997|gb|AAY40093.1| Mitochondrial import inner membrane translocase, subunit Tim44
[Pseudomonas syringae pv. syringae B728a]
Length = 281
Score = 78.8 bits (192), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/232 (11%), Positives = 72/232 (31%), Gaps = 39/232 (16%)
Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58
+F+ F IL+ I F +F R + ++ + + + Y
Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPPYQRETSQPAQ 140
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
G+ +++ F+ + FL+ AR ++++ + +
Sbjct: 141 NPIF------------------GSSSPASAAPVINAPAWFNEQRFLDAARGHFQSLQEHW 182
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
++ I + V ++ Q R +S+ + +++ + T+
Sbjct: 183 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTFIENLQVQLDGVDDRADKTIATL 239
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D + + W R + P W++ +
Sbjct: 240 TFSGVSKTSRFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 279
>gi|332380812|gb|AEE65659.1| hypothetical protein BPTD_0159 [Bordetella pertussis CS]
Length = 334
Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 27/228 (11%), Positives = 71/228 (31%), Gaps = 20/228 (8%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F + + LI L F F+ +LRG + + + + + +L
Sbjct: 120 FAEFMASMLLIALVVFAVIFIVRRLRGG-APRQAMQGAYGAAGGNRPGQPSQQPMWRESL 178
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
+ + + + DFD FL +A++ + I + G+
Sbjct: 179 NPAPAQQPAAAPAAAAAALPKAGD--DGNWFIPGDFDTPRFLQQAKDQFVRIQGIWDSGE 236
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
V ++ + + + L R + V + + +++ + ++R
Sbjct: 237 VESLRDFLTDDLISELKPQLEAR---GAAANKTEVVLLNAELLGIETVSDGHLASVRF-- 291
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+L + + ++W + ++ W+L +
Sbjct: 292 ---------SGMLREAPGTEAFRFEEVWNLFKP---ADGGWLLAGIQQ 327
>gi|283851351|ref|ZP_06368633.1| import inner membrane translocase subunit Tim44 [Desulfovibrio sp.
FW1012B]
gi|283573301|gb|EFC21279.1| import inner membrane translocase subunit Tim44 [Desulfovibrio sp.
FW1012B]
Length = 309
Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 28/205 (13%), Positives = 60/205 (29%), Gaps = 23/205 (11%)
Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87
R + ++T +E P + + + + ++ G
Sbjct: 127 RFIRSRRTASEGPSMAR-----TYEAAPVPPVREPLREAAANGWSNLGASPQAGASAPAG 181
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
V FD DFL A+ + + S+ + I F + + + +
Sbjct: 182 ----PQVPAGFDVDDFLTGAKALFGRLQKSWSARDLADIAAFSTPA----FMEDVRKQAA 233
Query: 148 NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
+ + V + D K++ + T + + PE V
Sbjct: 234 ADPTPTPTDVLLVDAKLLEVRSQGTTTIASAYFDTLLREDPK-------AGQPEQ---VR 283
Query: 208 DIWTFVRNIPPSNPNWVLISTKLGE 232
++W FVR W L + + +
Sbjct: 284 EVWHFVRRNDTPGDTWRLDAIQQLD 308
>gi|330878142|gb|EGH12291.1| Tim44-like domain-containing protein [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 281
Score = 78.4 bits (191), Expect = 6e-13, Method: Composition-based stats.
Identities = 27/232 (11%), Positives = 72/232 (31%), Gaps = 39/232 (16%)
Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58
+F+ F IL+ I F +F R + ++ + + + Y
Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPPYQRETSQPTQ 140
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
G+ +++ F+ + FL+ AR ++++ +
Sbjct: 141 NPIF------------------GSSSPASAAPVINAPAWFNEERFLDAARGHFQSLQQHW 182
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
++ I + V ++ Q R +S+ + ++++ + T+
Sbjct: 183 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTYIENLNVQLDGVDDRADKTIATL 239
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D + + W R + P W++ +
Sbjct: 240 TFSGVSKTSRFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 279
>gi|226500730|ref|NP_001147017.1| LOC100280627 [Zea mays]
gi|194707278|gb|ACF87723.1| unknown [Zea mays]
gi|195606496|gb|ACG25078.1| tim44-like domain containing protein [Zea mays]
Length = 303
Score = 78.4 bits (191), Expect = 6e-13, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 9/140 (6%)
Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
+ F ++A Y+ + G ++ K++ R++ + L R+S +V L
Sbjct: 160 GYTKNQFYDQALKIYKEVNTLMAHGDTSSLRKILTERMHSTIKNELKRRQSMWNSVHWEL 219
Query: 157 VGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
V + + +++ + +T+ V + +Y+ ++S D V
Sbjct: 220 VEPAVSIRTLRARMIGLDKNDLDKAFIQLTLEFVTKQKFEAYNSKGAVVSGDKSKEVLVK 279
Query: 208 DIWTFVRNIPPSNPNWVLIS 227
DIW F R++ W +
Sbjct: 280 DIWVFERSLFHPGAYWRVCG 299
>gi|302763825|ref|XP_002965334.1| hypothetical protein SELMODRAFT_83588 [Selaginella moellendorffii]
gi|300167567|gb|EFJ34172.1| hypothetical protein SELMODRAFT_83588 [Selaginella moellendorffii]
Length = 413
Score = 78.4 bits (191), Expect = 7e-13, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 9/160 (5%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
T ++I S F DF+ E + I+ ++ +G + K V V +
Sbjct: 247 GETATAAAFKEIRSRDPTFSFPDFVLEVQEDIRPILTAYLKGDYDTLRKKVCKEVVERCR 306
Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199
+S V + ++ I ++++ + + N I I Q D+ +
Sbjct: 307 AEHRALQSQGLYVDTKILYISELEVRESKLIGNEPVIIISFQTQQNYCVRDEFGHIREGS 366
Query: 200 P---EIFGKVIDIWTFVR------NIPPSNPNWVLISTKL 230
+ ++ W + + P W L +
Sbjct: 367 KASIDDIRTILYAWAMQQVSLDEMDPDEFTPRWRLREMQQ 406
>gi|326934094|ref|XP_003213130.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like [Meleagris
gallopavo]
Length = 341
Score = 78.4 bits (191), Expect = 7e-13, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 49/171 (28%), Gaps = 2/171 (1%)
Query: 56 ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115
K+ L E +R + +F K F A+ Y
Sbjct: 134 PPEGDARMTSLSKEGLKQRMEKLKQTAASQLALRKVKDHDPNFSTKTFPEMAQEIYVEAH 193
Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENT 173
+S + LV R Y D + V+S + +
Sbjct: 194 NSLANFNKQKLHSLVTERCYPDMVRGNRYKTIRWSFVESLEPPRVVHVRCTSIVNRGNLY 253
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
+T+R+ + A YD+ L+ ++ V++ F R + W
Sbjct: 254 GQVTVRMHSRQTLAIYDRFGRLMYGGEQLPKDVLEYVVFERYLVNPYGTWR 304
>gi|26992029|ref|NP_747454.1| hypothetical protein PP_5353 [Pseudomonas putida KT2440]
gi|24987165|gb|AAN70918.1|AE016736_1 conserved hypothetical protein [Pseudomonas putida KT2440]
Length = 284
Score = 78.4 bits (191), Expect = 7e-13, Method: Composition-based stats.
Identities = 26/229 (11%), Positives = 73/229 (31%), Gaps = 30/229 (13%)
Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61
+F+ F I+ F + FL R + ++ + + + +
Sbjct: 84 MFMGDGFEGFQIMDFLIVALIAFLVFRFIAARRRQQQPQMAMPGHAPMQREAHAQPAQPS 143
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
+ G + +++ F+ + FL ARN ++++ +
Sbjct: 144 IFGGSAAPAATAA---------------PVINAPAWFNEQSFLAAARNHFQSLQQHWDAN 188
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
++ I + V ++ + R +S+ + ++++ + T+
Sbjct: 189 EMDKISEFVTPQMLEFLK---RERAELGDGFQSTYIDNLEVQLDGVDDRADRTDATLTFR 245
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D + + W VR + P W++ +
Sbjct: 246 GVSKNSRFD-QGEV----------FSESWHMVRAQGENQP-WLVAGIRQ 282
>gi|46581175|ref|YP_011983.1| hypothetical protein DVU2771 [Desulfovibrio vulgaris str.
Hildenborough]
gi|46450596|gb|AAS97243.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
Hildenborough]
Length = 321
Score = 78.4 bits (191), Expect = 8e-13, Method: Composition-based stats.
Identities = 27/226 (11%), Positives = 62/226 (27%), Gaps = 32/226 (14%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
G +LL A + + +F + + + G
Sbjct: 127 MPGILDMLLLALVAYGIFKFI----------------SMRRQAANPQPAAAGYGAHTSPS 170
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
DN P G + + V FD + F+ A+ ++ + S+ + + I
Sbjct: 171 DNDNGWGTLRSAPQGGTTYQE-QAGPEVPAGFDIEQFIKGAKMAFTRLQASWDKRDLEDI 229
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ V + + ++ + + + ++ E T+
Sbjct: 230 SQFSTPAVLDEIRRQ----AEADPVPSTTEILLVNANLLGVVEENGQQTATVFFDVLLRE 285
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ V ++W FVR + W L + +
Sbjct: 286 DPR----------QDAPTSVREVWHFVRPVK-GTGMWQLDGIQQVD 320
>gi|218680118|ref|ZP_03528015.1| import inner membrane translocase subunit Tim44 [Rhizobium etli
CIAT 894]
Length = 78
Score = 78.4 bits (191), Expect = 8e-13, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
+I +A + + IT+RI+ Q ISA+YDK ++LI D E +V D+WTF R+
Sbjct: 5 TKAEITHAETKGSEAQITVRIISQLISATYDKADVLIEGDAENVAEVNDLWTFARDTRSR 64
Query: 220 NPNWVLISTKL 230
+PNW L++T+
Sbjct: 65 DPNWKLVATES 75
>gi|313496366|gb|ADR57732.1| Import inner membrane translocase [Pseudomonas putida BIRD-1]
Length = 284
Score = 78.0 bits (190), Expect = 8e-13, Method: Composition-based stats.
Identities = 26/229 (11%), Positives = 73/229 (31%), Gaps = 30/229 (13%)
Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61
+F+ F I+ F + FL R + ++ + + + +
Sbjct: 84 MFMGDGFEGFQIMDFLIVALIAFLVFRFIAARRRQQQPQMAMPGHAPMQREAHAQPAQPS 143
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
+ G + +++ F+ + FL ARN ++++ +
Sbjct: 144 IFGGSAAPAATAA---------------PVINAPAWFNEQSFLAAARNHFQSLQQHWDAN 188
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
++ I + V ++ + R +S+ + ++++ + T+
Sbjct: 189 EMDKISEFVTPQMLEFLK---RERAELGDGFQSTYIDNLEVQLDGVDDRADRTDATLTFR 245
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D + + W VR + P W++ +
Sbjct: 246 GVSKNSRFD-QGEV----------FSESWHMVRAQGENQP-WLVAGIRQ 282
>gi|70733447|ref|YP_263222.1| hypothetical protein PFL_6164 [Pseudomonas fluorescens Pf-5]
gi|68347746|gb|AAY95352.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
Length = 291
Score = 78.0 bits (190), Expect = 8e-13, Method: Composition-based stats.
Identities = 28/228 (12%), Positives = 73/228 (32%), Gaps = 35/228 (15%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F M F IL+ A I F +F R + ++ ++ ++ + +
Sbjct: 97 FQGM--QIFDILIMAVIAFVIF---RFIAARRRKQQEQYAPAGHAPMQREAFEPQQPA-- 149
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
G R +++ F+ + F+ AR+ ++++ + +
Sbjct: 150 -------------GGSIFGGSPAPAARPVINAPAWFNEERFIEAARSHFQSLQQHWDANE 196
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
+ I + V ++ Q R +S+ + +++ + T+ G
Sbjct: 197 MDKIAEFVTPQMLQFLKQ---ERADLGDGFQSTYIDNLQVQLEGVDDRADKTIATLTFSG 253
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++ +D + + W R + P W++ +
Sbjct: 254 VSKTSRFD-QGEV----------FSESWNMERAQGDNQP-WLVAGIRQ 289
>gi|91778033|ref|YP_553241.1| hypothetical protein Bxe_B2096 [Burkholderia xenovorans LB400]
gi|91690693|gb|ABE33891.1| Putative membrane protein [Burkholderia xenovorans LB400]
Length = 318
Score = 78.0 bits (190), Expect = 9e-13, Method: Composition-based stats.
Identities = 22/229 (9%), Positives = 63/229 (27%), Gaps = 25/229 (10%)
Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
+M S ++ + + + + ++ + + +
Sbjct: 114 AQMLSNAL-LIGLVVVAGVMLFRF--IANRRR---PDLAYGHGPANRQQTNGAPFLNQVR 167
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
+ + NL T ++ D FL A+ + + ++ +
Sbjct: 168 EARPDTNLRDWPRTTMDATGAASSVKA----PELADQAAFLVSAKAMFMRLQGAWDRNEQ 223
Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
+ +L + F + + V + +++N + +++R
Sbjct: 224 GDLFELTTPEM---FARLKQDLEIRGHEPSRTDVTQLEAEVLNTESSADETLVSVRFY-- 278
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ D +I +IW VR + W L + +
Sbjct: 279 ---------GQMREDDAQIVQPFQEIWNMVRR-AHGDEGWRLAGIQQID 317
>gi|241661967|ref|YP_002980327.1| import inner membrane translocase subunit Tim44 [Ralstonia
pickettii 12D]
gi|240863994|gb|ACS61655.1| import inner membrane translocase subunit Tim44 [Ralstonia
pickettii 12D]
Length = 339
Score = 78.0 bits (190), Expect = 9e-13, Method: Composition-based stats.
Identities = 26/245 (10%), Positives = 67/245 (27%), Gaps = 40/245 (16%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKT-------------GNEKPFSGFFSGKYVFSKRDERGI 59
++L A + F V +R V G + G+ +P+ + +
Sbjct: 110 LILIALVAFVVMWIIRKVRGSRPQGPAYATGGPSLGGDREPYVPQPAAPAPQASAPAAAS 169
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNK------------VMRDIVSVYTDFDPKDFLNEA 107
+ G + + V DFD + FL A
Sbjct: 170 LNTGNTSGLGAGAATAAQSWNLGGSAASAQAVNAQPAAAAPQQPWGVPADFDTQAFLRNA 229
Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167
+ + + ++ G ++ I + + F + + + V + +++
Sbjct: 230 KVYFIRLQAAWDAGNLNDIREFTTPEM---FAEIKMDLADRGTSPNKTDVVSVEAEMLGI 286
Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
+ ++R ++ ++W + + WVL
Sbjct: 287 ETQAAEYLASVRF-----------SGMIREEANAPAQPFAEVWNLTKPTQGAGG-WVLAG 334
Query: 228 TKLGE 232
+ +
Sbjct: 335 IQQLQ 339
>gi|20197991|gb|AAM15344.1| hypothetical protein [Arabidopsis thaliana]
Length = 499
Score = 78.0 bits (190), Expect = 9e-13, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 48/143 (33%), Gaps = 6/143 (4%)
Query: 91 IVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEK 150
+ + F DF++E + + +++++ +G ++K + + S
Sbjct: 347 VHKIQESFSLPDFVSEIQEAIRPVLNAYSKGDAKTLKKYCSKELIERCTAEHRAFTSQGY 406
Query: 151 NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210
L+ + ++ I + T I +R Q I D+D + + V W
Sbjct: 407 FFDHKLLHVSEVDIQETKMMGTTPVIIVRFQTQEIFCVRDQDGKIKEGGQDTIHTVYYDW 466
Query: 211 TFVR----NIPPS--NPNWVLIS 227
+ + P W L
Sbjct: 467 AMQQVDAAELGEDAIYPIWRLRE 489
>gi|297265563|ref|XP_002808078.1| PREDICTED: LOW QUALITY PROTEIN: 39S ribosomal protein L45,
mitochondrial-like [Macaca mulatta]
Length = 497
Score = 78.0 bits (190), Expect = 9e-13, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 46/139 (33%), Gaps = 2/139 (1%)
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
+R I +F KDF +A+N + + LV + D + +
Sbjct: 313 IRRIKDYDANFKIKDFPEKAKNIFIEAHLCLNNSDHDRLYTLVTEHCFPDMTWDIKYKTV 372
Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
V+S + + +T+ + + A YD+ L+ ++
Sbjct: 373 RXSFVESLEPSHVVQVHCSSIMNQGNVYGQVTVCMHTRQTLAIYDRFGRLMYGQEDVPKD 432
Query: 206 VIDIWTFVRNIPPSNPNWV 224
V++ F + + +W
Sbjct: 433 VLEYVVFEKQLTNPYGSWR 451
>gi|229365490|dbj|BAH57996.1| hypothetical protein [Acetobacter lovaniensis]
Length = 130
Score = 78.0 bits (190), Expect = 9e-13, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 2/127 (1%)
Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163
+ + I ++ + + A++++ + FN+ LS S S V
Sbjct: 3 YQAFQQTLMDIQTAWNQQNIAAMQQMATPEMVSYFNEQLSALASQGARNVVSDVHFIQGD 62
Query: 164 IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223
+ A E + T+ + I + + +I + ++WTF R W
Sbjct: 63 LAEAWRENGMDFATVAMRYSLIDLTTNAMGQVIQGSSTEPVNITELWTFTRP--SRGGRW 120
Query: 224 VLISTKL 230
+L + +
Sbjct: 121 LLSAIQQ 127
>gi|296136650|ref|YP_003643892.1| import inner membrane translocase subunit Tim44 [Thiomonas
intermedia K12]
gi|295796772|gb|ADG31562.1| import inner membrane translocase subunit Tim44 [Thiomonas
intermedia K12]
Length = 304
Score = 78.0 bits (190), Expect = 9e-13, Method: Composition-based stats.
Identities = 29/220 (13%), Positives = 62/220 (28%), Gaps = 31/220 (14%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
+I L A F++F LR + S S + + +G G +
Sbjct: 114 LMIGLLALAAFWIFNLLR----------RKSSTDKSAQPMQYAGASQGYAQAPLGAETHV 163
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
T S+ DFD FL A+ Y + ++ +++++
Sbjct: 164 PAQWTPGAGSQTASGA------SIPADFDRDGFLASAKQHYIRLQQAWDAADLNSLKTFT 217
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
+ +Y L R + + + ++ ++
Sbjct: 218 TAEMYDALAADLQQR---GMTPNKTEIVTLEASLLALEETPTEYVASVEF---------- 264
Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
L+ V ++W V+ + W L +
Sbjct: 265 -SGLVREETWGGASPVREVWNLVKP-RDGSSGWQLAGIQQ 302
>gi|186526131|ref|NP_001119286.1| P-P-bond-hydrolysis-driven protein transmembrane transporter
[Arabidopsis thaliana]
gi|332006297|gb|AED93680.1| Mitochondrial inner membrane translocase complex, subunit
Tim44-related protein [Arabidopsis thaliana]
Length = 296
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 9/154 (5%)
Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
L T + F EA Y+ I G+ I K V R+Y + +
Sbjct: 139 ELRSAYAIAKLRKTGYSKNTFYIEALELYKQINIQMANGEKKTIRKNVTERMYSALKNEI 198
Query: 143 STRKSNEKNVKSSLVGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
R++ V +V + I +++ + +T+ + + +YD
Sbjct: 199 KQREAMWDGVYWEMVEPVVKIRTLQARLIGIDRTDLKKAFIQLTLEFLTKQKFEAYDAKG 258
Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
+ + D V DIW F +++ + W L
Sbjct: 259 NVAAGDKNKEVLVRDIWVFEKSLFHTGAYWRLCG 292
>gi|148256773|ref|YP_001241358.1| hypothetical protein BBta_5490 [Bradyrhizobium sp. BTAi1]
gi|146408946|gb|ABQ37452.1| putative exported protein of unknown function [Bradyrhizobium sp.
BTAi1]
Length = 325
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/225 (13%), Positives = 64/225 (28%), Gaps = 24/225 (10%)
Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
+ ++L + F+ R + +P + G+ LG G
Sbjct: 123 ASILGLILQIVLVVFLV---RMAMAWWQRRNQPAYAAGPSPADGQQSFRSGLSGLGSGLG 179
Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
P D + F I ++ V +
Sbjct: 180 GFGGFGGGSNQPPL------------QIQPADYEAF----ERLLGEIQQAWSNEDVGRLR 223
Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
L + F L ++ K S V + + A E Y T+ +
Sbjct: 224 LLSTPEMASYFERDLEQNQARGVVNKVSGVKLLQGDLAEAWRENGADYATVAMRFTLADK 283
Query: 188 SYDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ ++ ++ + +V +IWTF+R+ +W L + +
Sbjct: 284 TTERASGRVVEGS-DQPQEVTEIWTFLRH---PGADWQLSAIQQV 324
>gi|297808779|ref|XP_002872273.1| protein translocase [Arabidopsis lyrata subsp. lyrata]
gi|297318110|gb|EFH48532.1| protein translocase [Arabidopsis lyrata subsp. lyrata]
Length = 314
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 53/154 (34%), Gaps = 9/154 (5%)
Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
L T + F EA Y+ I G I K V R+Y + +
Sbjct: 157 ELRSAYAIAKLRKTGYSKNTFYIEALELYKQINILMANGDKKTIRKNVTERMYSALKNEI 216
Query: 143 STRKSNEKNVKSSLVGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
R++ V ++ + I +++ + +T+ + + +YD
Sbjct: 217 KQREAMWDGVYWEMIEPVVKIRTLQARLIGIDRTDLKKAFIQLTLEFLTKQKFEAYDAKG 276
Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
+++ D V DIW F +++ + W L
Sbjct: 277 NVVAGDRNKEVLVRDIWVFEKSLFHTGAYWRLCG 310
>gi|296160985|ref|ZP_06843796.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
Ch1-1]
gi|295888684|gb|EFG68491.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
Ch1-1]
Length = 330
Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/212 (10%), Positives = 59/212 (27%), Gaps = 23/212 (10%)
Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFP 79
++ R +G+K +P S + G+ + +
Sbjct: 139 GVWLI---RRFMGRKRDTAQPAYAGGSP-----SLNSGGMGYSQEPRYSAPPTGSYLEPQ 190
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
+ +V FD + FL A+ + + ++ G I + + F
Sbjct: 191 GNPLSTPTINAAPAVPAGFDSEAFLRNAKVYFVRLQAAWDVGNTEDIREFTTPEM---FA 247
Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199
+ S + V + +++ N + ++R L+ +
Sbjct: 248 EVKVDLSSRGAETNQTDVVQLNAELLGVEERANEYFASVRF-----------SGLIREAP 296
Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+++W + W+L +
Sbjct: 297 GAAAEPFVEVWNLSKANRAGEG-WLLAGIQQV 327
>gi|120601588|ref|YP_965988.1| import inner membrane translocase, subunit Tim44 [Desulfovibrio
vulgaris DP4]
gi|120561817|gb|ABM27561.1| import inner membrane translocase, subunit Tim44 [Desulfovibrio
vulgaris DP4]
gi|311234849|gb|ADP87703.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
vulgaris RCH1]
Length = 311
Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/226 (11%), Positives = 62/226 (27%), Gaps = 32/226 (14%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
G +LL A + + +F + + + G
Sbjct: 117 MPGILDMLLLALVAYGIFKFI----------------SMRRQAANPQPAAAGYGAHTSPS 160
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
DN P G + + V FD + F+ A+ ++ + S+ + + I
Sbjct: 161 DNDNGWGTLRSAPQGGTTYQE-QAGPEVPAGFDIEQFIKGAKMAFTRLQASWDKRDLEDI 219
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ V + + ++ + + + ++ E T+
Sbjct: 220 SQFSTPAVLDEIRRQ----AEADPVPSTTEILLVNANLLGVVEENGQQTATVFFDVLLRE 275
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ V ++W FVR + W L + +
Sbjct: 276 DPR----------QDAPTSVREVWHFVRPVK-GTGMWQLDGIQQVD 310
>gi|302191653|ref|NP_001180514.1| 39S ribosomal protein L45, mitochondrial [Gallus gallus]
Length = 296
Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 49/171 (28%), Gaps = 2/171 (1%)
Query: 56 ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115
K+ L E +R + +F K F A+ Y
Sbjct: 89 PPEGDARVTSLSKEGLKQRMEKLKQTAASQLALRKVKDHDPNFSTKTFPEVAQEIYVEAH 148
Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENT 173
+S + LV R Y D + V+S + +
Sbjct: 149 NSLANFNKQKLHSLVTERCYPDMVRGNRYKTIRWSFVESLEPPRVVHVRCTSVVNQGNLY 208
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
+T+R+ + A YD+ L+ ++ V++ F R + W
Sbjct: 209 GQVTVRMHTRQTLAIYDRFGRLMYGGEKLPKDVLEYVVFERYLVNPYGTWR 259
>gi|329906020|ref|ZP_08274321.1| putative membrane protein [Oxalobacteraceae bacterium IMCC9480]
gi|327547352|gb|EGF32182.1| putative membrane protein [Oxalobacteraceae bacterium IMCC9480]
Length = 209
Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/225 (9%), Positives = 63/225 (28%), Gaps = 19/225 (8%)
Query: 7 DSGDFLILLF-AFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
+ LL + F R K KP +G
Sbjct: 1 MASMISTLLMVGLLAAAAFFIYRMFKRKTDDGSKPGYAGGYDAGSTDSSSRNYTPEIGSR 60
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
+ + + P+ + + + + D FL ++ + + ++ + ++
Sbjct: 61 IEPVAQPAALQSVPLTSGAAAAPFGVPADF---DVPGFLRNSKTYFIRLQAAWDKADIND 117
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
I + S ++ + + R + ++ V D +++ +++
Sbjct: 118 IREFTSSEMFAELRLQIQER---GASPNNTDVVKLDAELLGVETVGGDYLASVKF----- 169
Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++ S+ + W ++ W+L +
Sbjct: 170 ------SGMIKESESAPAEPFAEAWNLSKS-TSGQGGWILAGIQQ 207
>gi|91781796|ref|YP_557002.1| hypothetical protein Bxe_A4049 [Burkholderia xenovorans LB400]
gi|91685750|gb|ABE28950.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
Length = 330
Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/210 (10%), Positives = 59/210 (28%), Gaps = 23/210 (10%)
Query: 22 FVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIG 81
++ R +G+K +P S + G+ + +
Sbjct: 141 WLI---RRFMGRKRDTSQPAYAGGSP-----SLNSSGMGYSQEPRYTAPPTGSYLEPQGN 192
Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
+ +V FD + FL A+ + + ++ G I + + F +
Sbjct: 193 PLSTPAINTAPAVPAGFDSEAFLRNAKVYFVRLQAAWDVGNTEDIREFTTPEM---FAEV 249
Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201
S + V + +++ N + ++R L+ +
Sbjct: 250 KVDLSSRGAETNQTDVVQLNAELLGVEERANEYFASVRF-----------SGLIREAPGA 298
Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+++W + W+L +
Sbjct: 299 AAEPFVEVWNLSKANRAGEG-WLLAGIQQV 327
>gi|308807262|ref|XP_003080942.1| Putative mitochondrial/chloroplast ribosomal protein L45 (ISS)
[Ostreococcus tauri]
gi|116059403|emb|CAL55110.1| Putative mitochondrial/chloroplast ribosomal protein L45 (ISS)
[Ostreococcus tauri]
Length = 285
Score = 77.7 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/211 (14%), Positives = 55/211 (26%), Gaps = 16/211 (7%)
Query: 32 GKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDI 91
G ++G + ++ R I + + + +
Sbjct: 56 GARSGIRLNRTSSNVIAEPYAGPLRRPTIVQALTTSL-GWRYVVDSALGKAKDAYALSKC 114
Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGK-----VHAIEKLVDSRVYQDFNDSLSTRK 146
F F EA+ Y I + H ++ D R+
Sbjct: 115 TKEIKGFTLDGFKAEAKQLYRMINATSASTSGTRALSHETRHATTDKMQSDLKRERKARE 174
Query: 147 SNEKNVKSSLVGIDDMKII----------NASIEENTVYITIRIVGQFISASYDKDNLLI 196
+ + + N + V +T R + A+YD L+
Sbjct: 175 LGGWGAIDWSLEDIEECQVVRGRLIMANPNDTSGAGFVQLTTRFRSRQRFAAYDGKGRLV 234
Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
S DP+ V D W F + N W L
Sbjct: 235 SGDPDEVLDVEDFWVFEHGLKIPNSRWRLAG 265
>gi|330812676|ref|YP_004357138.1| hypothetical protein PSEBR_a5598 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327380784|gb|AEA72134.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 291
Score = 77.3 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/229 (10%), Positives = 69/229 (30%), Gaps = 30/229 (13%)
Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61
+F+ I + FL R + ++ ++ F+
Sbjct: 91 MFMGDGFQGMQIFDILIMAVIAFLVFRFIAARRRKQQEQFAPAGHA-------------- 136
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
++ N + G+ R +++ F+ + F+ AR+ + ++ +
Sbjct: 137 -PMQREVFNQQPASGSIFGGSAAPVAARPVINAPAWFNEQRFIEAARSHFMSLQQHWDAN 195
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
++ I + V ++ + R +S+ + +++ + T+
Sbjct: 196 EMDKIAEFVTPQLLEFLK---RERAELGDGFQSTYIDNLHVQLDGVDDRADKTIATLTFS 252
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G + +DK + W R P W++ +
Sbjct: 253 GVSKDSRFDKG-----------EAFSESWNMERAQGDDQP-WLVAGIRQ 289
>gi|188996487|ref|YP_001930738.1| import inner membrane translocase subunit Tim44
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188931554|gb|ACD66184.1| import inner membrane translocase subunit Tim44
[Sulfurihydrogenibium sp. YO3AOP1]
Length = 295
Score = 77.3 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/219 (15%), Positives = 74/219 (33%), Gaps = 9/219 (4%)
Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73
LL A +F L LG + +G + + K ++ + +
Sbjct: 84 LLGALAGMVIFSALSHFLG-----LQFAAGVLGILGLLLLAGLIFFVIRLFRKGEEPVGA 138
Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
N + + + LN +N + I ++ G + ++ + R
Sbjct: 139 FNTNLNYQPYQYDDSQTQAGSLPYINEELILNLTKNIFYDIQKAWSNGDLSPVKNFLTDR 198
Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
+YQ + L K+ I++++I++ E + + +R+ I + D +
Sbjct: 199 MYQYLEEQLKDLKAKGLRNIVENPKIENLEIVHVEEEGDNKVVIVRLDASAIDYTVDSNG 258
Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
++ +D + W FV NW L K +
Sbjct: 259 NIVEADKYNPVSFTEYWAFV----GKALNWKLDDIKQVD 293
>gi|92118080|ref|YP_577809.1| import inner membrane translocase, subunit Tim44 [Nitrobacter
hamburgensis X14]
gi|91800974|gb|ABE63349.1| import inner membrane translocase, subunit Tim44 [Nitrobacter
hamburgensis X14]
Length = 312
Score = 77.3 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 48/152 (31%), Gaps = 9/152 (5%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
G T D + F I ++ V+ + L + F
Sbjct: 168 SGFGFASASNAPPLEITPSDYEAF----ERLLGEIQTAWSNEDVNTLHTLATPEMVSYFT 223
Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK-DNLLISS 198
+ L + K S V + + A E T Y T+ + I + ++ ++
Sbjct: 224 EDLRANDARGVVNKVSDVKLLQGDLAEAWREGTTDYATVALRYSLIDKTTERASGRVVEG 283
Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ +V D+WTF R W L + +
Sbjct: 284 S-DQPQEVTDVWTFAR---LGGGKWELSAIQQ 311
>gi|300705184|ref|YP_003746787.1| hypothetical protein RCFBP_21025 [Ralstonia solanacearum CFBP2957]
gi|299072848|emb|CBJ44204.1| conserved membrane protein of unknown function [Ralstonia
solanacearum CFBP2957]
Length = 348
Score = 77.3 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/246 (10%), Positives = 64/246 (26%), Gaps = 41/246 (16%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKT-------------GNEKPFSGFFSGKYVFSKRDERGI 59
++L A + F V +R + G + G+ +P+ +
Sbjct: 118 LILIAIVAFVVMWIIRKLRGTRAQGPAYATGGPSLGGDREPYVPSPAAPAAQPAAPVAAS 177
Query: 60 ITLGKGKKKDNLD-------------SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNE 106
+ G L V + V DFD + FL
Sbjct: 178 TSTGSAGNASGLGAGAQTAAQAWSLGGPAAPVADAPAAAPVAQQPWGVPADFDTQAFLRN 237
Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN 166
A+ + + ++ ++ I + + F + + V + +++
Sbjct: 238 AKVYFIRLQAAWDTANLNDIREFTTPEM---FAEIKMDLADRGTAPNKTDVVSVEAELLG 294
Query: 167 ASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226
++R ++ ++W + + WVL
Sbjct: 295 IETHPTEYLASVRF-----------SGMIREDANAPAQPFAEVWNLTKP-TQGSGGWVLA 342
Query: 227 STKLGE 232
+ +
Sbjct: 343 GIQQLQ 348
>gi|218200130|gb|EEC82557.1| hypothetical protein OsI_27102 [Oryza sativa Indica Group]
gi|222637566|gb|EEE67698.1| hypothetical protein OsJ_25363 [Oryza sativa Japonica Group]
Length = 321
Score = 77.3 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 56/140 (40%), Gaps = 9/140 (6%)
Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
+ K+F ++A Y+ + G ++ K++ R++ + L R+S +V L
Sbjct: 178 GYTKKEFYDQAFKIYKEVNTLMAHGDTSSLRKILTERMHSTIKNELKKRQSMWSSVHWEL 237
Query: 157 VGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
V + + +++ + +T+ V + +Y+ ++S D V
Sbjct: 238 VEPAVCIRTLRARMIGLDKNDLDKAFIQLTLEFVTKQKFEAYNTKGEVVSGDKSKEVLVK 297
Query: 208 DIWTFVRNIPPSNPNWVLIS 227
DIW F R++ W +
Sbjct: 298 DIWVFERSLFHPGAYWRVCG 317
>gi|148235359|ref|NP_001079503.1| 39S ribosomal protein L45, mitochondrial precursor [Xenopus laevis]
gi|29611839|sp|P59480|RM45_XENLA RecName: Full=39S ribosomal protein L45, mitochondrial;
Short=L45mt; Short=MRP-L45; Flags: Precursor
gi|27696384|gb|AAH43883.1| Mrlp45 protein [Xenopus laevis]
Length = 309
Score = 77.3 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 49/160 (30%), Gaps = 3/160 (1%)
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
K+ L + +R + ++F K F +A+ + H +
Sbjct: 101 SKEGLKQRTQQLKQTAASQLAIRKVKEYDSEFTTKTFPEKAQEIFITAHKYLTNFDRHKL 160
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQF 184
LV R Y + R V+S + S +T+R+ +
Sbjct: 161 HTLVTERCYPEMVRGNRYRTIRWSFVESIEAPRVVQVRCPEMVSKGNLYAQVTVRMHNKQ 220
Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
YD+ ++ E V++ F R++ W
Sbjct: 221 TLIVYDRFGRVMCGSEE-PRDVLEYVVFERHMVNPYGTWR 259
>gi|332374642|gb|AEE62462.1| unknown [Dendroctonus ponderosae]
Length = 325
Score = 77.3 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/195 (12%), Positives = 59/195 (30%), Gaps = 9/195 (4%)
Query: 40 PFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIG-------TRLNKVMRDIV 92
P + ++ S + + + +R +R I
Sbjct: 84 PPRPWMEHQHFISSSGDIFEPYVPPEGDGKVSPISAQGAKQNLVFLEKKSRTMLAVRKIR 143
Query: 93 SVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNV 152
DFD +F A + Y + + + + R Y + ++ + K +
Sbjct: 144 QYDEDFDGPEFCKSATDIYIKMHECMAANDKETLINYITERAYPEVVHNIDNKTLRWKYL 203
Query: 153 KSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210
K + + + + +T+R Q A YD+ L+ + V++
Sbjct: 204 KDIELPRIVHARNTEVITPDNVFAQVTVRFHTQQTLAIYDRFGRLMHGSEILAKDVLEYV 263
Query: 211 TFVRNIPPSNPNWVL 225
F +++ W +
Sbjct: 264 VFEKHLSNQYGLWRV 278
>gi|187927437|ref|YP_001897924.1| import inner membrane translocase subunit Tim44 [Ralstonia
pickettii 12J]
gi|309779861|ref|ZP_07674616.1| Tim44 domain protein [Ralstonia sp. 5_7_47FAA]
gi|187724327|gb|ACD25492.1| import inner membrane translocase subunit Tim44 [Ralstonia
pickettii 12J]
gi|308921438|gb|EFP67080.1| Tim44 domain protein [Ralstonia sp. 5_7_47FAA]
Length = 339
Score = 77.3 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/245 (10%), Positives = 67/245 (27%), Gaps = 40/245 (16%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKT-------------GNEKPFSGFFSGKYVFSKRDERGI 59
++L A + F V +R V G + G+ +P+ + +
Sbjct: 110 LILIALVAFVVMWIIRKVRGSRPQGPAYATGGPSLGGDREPYVPQPAAPAPQASAPAAAS 169
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNK------------VMRDIVSVYTDFDPKDFLNEA 107
+ G + + V DFD + FL A
Sbjct: 170 LNTGNTSGLGAGAATAAQSWNLGGSAASAQAVNAQPAAAAPQQPWGVPADFDTQAFLRNA 229
Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167
+ + + ++ G ++ I + + F + + + V + +++
Sbjct: 230 KVYFIRLQAAWDAGNLNDIREFTTPEM---FAEIKMDLADRGTSPNKTDVVSVEAEMLGI 286
Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
+ ++R ++ ++W + + WVL
Sbjct: 287 ETQAAEYLASVRF-----------SGMIREEANAPAQPFAEVWNLTKPTQGAGG-WVLAG 334
Query: 228 TKLGE 232
+ +
Sbjct: 335 IQQLQ 339
>gi|145334561|ref|NP_001078626.1| P-P-bond-hydrolysis-driven protein transmembrane transporter
[Arabidopsis thaliana]
gi|26451284|dbj|BAC42743.1| unknown protein [Arabidopsis thaliana]
gi|332006296|gb|AED93679.1| Mitochondrial inner membrane translocase complex, subunit
Tim44-related protein [Arabidopsis thaliana]
Length = 313
Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 9/154 (5%)
Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
L T + F EA Y+ I G+ I K V R+Y + +
Sbjct: 156 ELRSAYAIAKLRKTGYSKNTFYIEALELYKQINIQMANGEKKTIRKNVTERMYSALKNEI 215
Query: 143 STRKSNEKNVKSSLVGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
R++ V +V + I +++ + +T+ + + +YD
Sbjct: 216 KQREAMWDGVYWEMVEPVVKIRTLQARLIGIDRTDLKKAFIQLTLEFLTKQKFEAYDAKG 275
Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
+ + D V DIW F +++ + W L
Sbjct: 276 NVAAGDKNKEVLVRDIWVFEKSLFHTGAYWRLCG 309
>gi|121608297|ref|YP_996104.1| import inner membrane translocase subunit Tim44 [Verminephrobacter
eiseniae EF01-2]
gi|121552937|gb|ABM57086.1| import inner membrane translocase, subunit Tim44 [Verminephrobacter
eiseniae EF01-2]
Length = 321
Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 19/235 (8%), Positives = 69/235 (29%), Gaps = 26/235 (11%)
Query: 9 GDFLILLFAFITFFVFLQLRGVLGKKTGN--------EKPFSGFFSGKYVFSKRDERGII 60
+I L A + + V+ R VL + G + + + +
Sbjct: 102 QFLMIALLAMLAYAVY---RMVLRARQGGAGGSGLALQGAGASSPQAAQAPVQYSPHNVG 158
Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMR--DIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ + G + + V FD FL A+ ++ + ++
Sbjct: 159 NDASARPWEGSGMAGRQPAAGVVIGSGLAGAQNWGVPEGFDTDGFLAAAKRNFVTLQAAW 218
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRK-SNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
+ + ++ + + L+ R+ + + + + + +++ + + +
Sbjct: 219 DRSDISTLRSMMTDDMLGEIRAQLAEREAQHGAQSQQTEAVMIEARLLGIEDQADCYMAS 278
Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ ++ ++W ++ + W++ + +
Sbjct: 279 VEF-----------SGMIREEPSAGASPFREVWNMTKS-KAGSTGWLVAGVQALQ 321
>gi|298498003|ref|ZP_07007810.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
gi|297542336|gb|EFH78386.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
Length = 272
Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 13/183 (7%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +R L K G+ + + E+ + +
Sbjct: 92 GIQFMDILIMGLIAFVIFKLMRAFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQP 151
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ G + FD F+N AR Y + ++ ++ I
Sbjct: 152 QS---------MGGGFGSAAQSDVPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQLETI 202
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ V +++D + + + + + V D +I+ A + N ++++ G++++
Sbjct: 203 REYVSPSLFEDLKAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQFSGRYVT 258
Query: 187 ASY 189
S
Sbjct: 259 LSK 261
>gi|242051094|ref|XP_002463291.1| hypothetical protein SORBIDRAFT_02g041340 [Sorghum bicolor]
gi|241926668|gb|EER99812.1| hypothetical protein SORBIDRAFT_02g041340 [Sorghum bicolor]
Length = 158
Score = 77.3 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 56/140 (40%), Gaps = 9/140 (6%)
Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
+ K F ++A Y+ + G ++ K++ R++ + L R+S +V L
Sbjct: 15 GYTKKQFYDQALKIYKEVNTLMAHGDTSSLRKILTERMHSTIKNELKRRQSMWNSVHWEL 74
Query: 157 VGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
V + + ++++ + +T+ V + +Y+ ++S D V
Sbjct: 75 VEPAVSIRTLRARMIGLDKNDLDKSFIQLTLEFVTKQKFEAYNSKGAVVSGDKSKEVLVK 134
Query: 208 DIWTFVRNIPPSNPNWVLIS 227
DIW F R++ W +
Sbjct: 135 DIWVFERSLFHPGAYWRVCG 154
>gi|86750877|ref|YP_487373.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
palustris HaA2]
gi|86573905|gb|ABD08462.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
palustris HaA2]
Length = 338
Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/194 (15%), Positives = 65/194 (33%), Gaps = 11/194 (5%)
Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTD 97
++ + + Y + + T+G G + F G + +
Sbjct: 153 QRRNNPQPAPAYANTNANNNAGPTVGPGPEPAPAYRTGFGFGSGGGSASNLPPLEIKPE- 211
Query: 98 FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157
D + F I ++ + +L + F L+ K+ K S V
Sbjct: 212 -DYEAF----EQLLGDIQSAWTNEDTEKLNQLTTPEMASYFAKDLAENKAANDINKVSDV 266
Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRNI 216
+ + A E T Y T+ + + + ++ + L++ E +V ++WTF R
Sbjct: 267 KLLQGDLAEAWREGETDYATVAMRFSLVDKTLERGTDRLVAGS-ETPIEVTEVWTFARR- 324
Query: 217 PPSNPNWVLISTKL 230
+W L + +
Sbjct: 325 --PGAHWELSAIQQ 336
>gi|83746614|ref|ZP_00943664.1| Hypothetical protein RRSL_03792 [Ralstonia solanacearum UW551]
gi|83726748|gb|EAP73876.1| Hypothetical protein RRSL_03792 [Ralstonia solanacearum UW551]
Length = 348
Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/248 (9%), Positives = 64/248 (25%), Gaps = 45/248 (18%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
++L A + F V +R + G + ++P + + +
Sbjct: 118 LILIAIVAFVVMWIIRKLRGTRP--QEPAYATGGPSLGGDREPYVPSPAAPAAQPAAPVA 175
Query: 73 SINELFPIGTRLN----------------------------KVMRDIVSVYTDFDPKDFL 104
+ G +V + V DFD + FL
Sbjct: 176 ASTGTGSAGNASGLGAGAQTAAQAWSLGGPAAPVADAPAAAQVAQQPWGVPADFDTQAFL 235
Query: 105 NEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164
A+ + + ++ ++ I + + F + + V + ++
Sbjct: 236 RNAKVYFIRLQAAWDTANLNDIREFTTPEM---FAEIKMDLADRGTAPNKTDVVSVEAEL 292
Query: 165 INASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
+ ++R ++ ++W + + WV
Sbjct: 293 LGIETHPTEYLASVRF-----------SGMIREDANAPAQPFAEVWNLTKP-TQGSGGWV 340
Query: 225 LISTKLGE 232
L + +
Sbjct: 341 LAGIQQLQ 348
>gi|41053493|ref|NP_956601.1| 39S ribosomal protein L45, mitochondrial [Danio rerio]
gi|29476850|gb|AAH50166.1| Mitochondrial ribosomal protein L45 [Danio rerio]
Length = 251
Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/180 (15%), Positives = 53/180 (29%), Gaps = 2/180 (1%)
Query: 48 KYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA 107
+ R R D P + +R I + F K+F
Sbjct: 23 RQQTLNRRPRASRRKKPELPVWWSDKSTWRDPSTSHAQLAIRKIKDYDSTFTSKEFPGIG 82
Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKII 165
+ + + E + LV R Y + + + ++S +
Sbjct: 83 QQIFIDAHAALTEFNKEKLHSLVTERCYPEMVRGNRYKTLRWRFIESLEPPRLVQARCPD 142
Query: 166 NASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
S +T+R+ + A YD+ L+ D E V++ R++ W L
Sbjct: 143 MISKGNLYGQVTVRMHSRQTLAIYDRFGRLMLGDEEEPRDVLEYLVMERHLVNPYGRWRL 202
>gi|330976327|gb|EGH76384.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
syringae pv. aptata str. DSM 50252]
Length = 281
Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/232 (11%), Positives = 71/232 (30%), Gaps = 39/232 (16%)
Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58
+F+ F IL+ I F +F R + ++ + + + Y
Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGASPYQRETSQPAQ 140
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
G+ +++ F+ + FL+ AR ++++ +
Sbjct: 141 NPIF------------------GSSSPASTAPVINAPAWFNEQRFLDAARGHFQSLQQHW 182
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
++ I + V ++ Q R +S+ + +++ + T+
Sbjct: 183 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTYIENLQVQLDGVDDRADKTIATL 239
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D + + W R + P W++ +
Sbjct: 240 TFSGVSKTSRFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 279
>gi|321469612|gb|EFX80592.1| hypothetical protein DAPPUDRAFT_303989 [Daphnia pulex]
Length = 327
Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 3/199 (1%)
Query: 29 GVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVM 88
G+L ++ E+P + + G L EL ++ +
Sbjct: 81 GMLPPRSWMERPVFVSATSSVFEAYVPPEGDGKL-SALTLGGAKQSMELLSKKSKSMMAV 139
Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148
R I S DF K F EA+ Y + E + + V Y D L +
Sbjct: 140 RKIKSFEEDFSTKYFPEEAQEIYLKAHKALAEKDDDTLHQCVTELCYPLMTDDLRSCTVR 199
Query: 149 EKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
+ +KS + + E +T+R Q A YD+ LI + + V
Sbjct: 200 WQFLKSLEPPRVVHARCTEVINKENIFSQVTVRFNTQQTLAVYDRFGRLIYGNEVVAKDV 259
Query: 207 IDIWTFVRNIPPSNPNWVL 225
++ F +++ W +
Sbjct: 260 LEYVVFEKHLANVYGLWRI 278
>gi|319945468|ref|ZP_08019728.1| Tim44 domain protein [Lautropia mirabilis ATCC 51599]
gi|319741254|gb|EFV93681.1| Tim44 domain protein [Lautropia mirabilis ATCC 51599]
Length = 318
Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/231 (12%), Positives = 64/231 (27%), Gaps = 24/231 (10%)
Query: 10 DFLILLFAFITFFVFLQLRGVL---------GKKTGNEKPFSGFFSGKYVFSKRDERGII 60
L++L A + F F L G F+ + D
Sbjct: 102 FLLMILLAGLAIFAFRMFGKRLQQQQQAQAAGSGAPFAGNLRDAFNNSGKQGQNDMFRQN 161
Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
+ G + P + V FD + F+ +A+ + + +F
Sbjct: 162 SNAGGLFSQTPAAGAAQAPAADSTVSGYTAAMQVPGGFDTEAFVRQAKVQFVRLQAAFDA 221
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
+ + ++ + N + R +++ V + ++ E + ++
Sbjct: 222 RNADDLREFTSPEMFGELNIDMMQR---GSAPQTTEVVELNAELTGMHQEGPILVASVLF 278
Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
L+ +IW F R ++ WVL +
Sbjct: 279 -----------SGLIREEPNSPAEPFSEIWNFTRPASGASG-WVLAGIQQP 317
>gi|207742308|ref|YP_002258700.1| hypothetical protein RSIPO_00492 [Ralstonia solanacearum IPO1609]
gi|206593696|emb|CAQ60623.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
Length = 351
Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/248 (9%), Positives = 64/248 (25%), Gaps = 45/248 (18%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
++L A + F V +R + G + ++P + + +
Sbjct: 121 LILIAIVAFVVMWIIRKLRGTRP--QEPAYATGGPSLGGDREPYVPSPAAPAAQPAAPVA 178
Query: 73 SINELFPIGTRLN----------------------------KVMRDIVSVYTDFDPKDFL 104
+ G +V + V DFD + FL
Sbjct: 179 ASTGTGSAGNASGLGAGAQTAAQAWSLGGPAAPVADAPAAAQVAQQPWGVPADFDTQAFL 238
Query: 105 NEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164
A+ + + ++ ++ I + + F + + V + ++
Sbjct: 239 RNAKVYFIRLQAAWDTANLNDIREFTTPEM---FAEIKMDLADRGTAPNKTDVVSVEAEL 295
Query: 165 INASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
+ ++R ++ ++W + + WV
Sbjct: 296 LGIETHPTEYLASVRF-----------SGMIREDANAPAQPFAEVWNLTKP-TQGSGGWV 343
Query: 225 LISTKLGE 232
L + +
Sbjct: 344 LAGIQQLQ 351
>gi|33603441|ref|NP_891001.1| hypothetical protein BB4467 [Bordetella bronchiseptica RB50]
gi|33577565|emb|CAE34830.1| putative membrane protein [Bordetella bronchiseptica RB50]
Length = 340
Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/233 (12%), Positives = 68/233 (29%), Gaps = 24/233 (10%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F + + LI L F F+ +LRG G + G G +
Sbjct: 120 FAEFMASMLLIALVVFAVIFIVRRLRG--GAPRQAMQSAYGAAGGNRPGQPSQQPMWRES 177
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRD-----IVSVYTDFDPKDFLNEARNSYEAIVDS 117
+ + + DFD FL +A++ + I
Sbjct: 178 LNPAPAQQPAAAPVAAAAPAAAAAALPKAGDDGNWFIPGDFDTPRFLQQAKDQFVRIQGI 237
Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
+ G+V ++ + + + L R + V + + +++ + +
Sbjct: 238 WDSGEVESLRDFLTDDLISELKPQLEAR---GAAANKTEVVLLNAELLGIETVSDGHLAS 294
Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+R +L + + ++W + ++ W+L +
Sbjct: 295 VRF-----------SGMLREAPGTEAFRFEEVWNLFKP---ADGGWLLAGIQQ 333
>gi|294340780|emb|CAZ89175.1| conserved hypothetical protein; putative membrane protein
[Thiomonas sp. 3As]
Length = 304
Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/220 (12%), Positives = 61/220 (27%), Gaps = 31/220 (14%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
+I L A F++F LR + S S + + +G G +
Sbjct: 114 LMIGLLALAAFWIFNLLR----------RKSSTDKSAQPMQYAGASQGYAQAPLGVETHM 163
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
T + DFD FL A+ Y + ++ +++++
Sbjct: 164 PAQWTPGAGSQTASGAGI------PADFDRDGFLASAKQHYIRLQQAWDAADLNSLKTFA 217
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
+ +Y L R + + + ++ ++
Sbjct: 218 TAEMYDALAADLQQR---GMTPNKTEIVTLEASLLALEETPTEYVASVEF---------- 264
Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
L+ V ++W V+ + W L +
Sbjct: 265 -SGLVREETWGGASPVREVWNLVKP-RDGSSGWQLAGIQQ 302
>gi|207727902|ref|YP_002256296.1| hypothetical protein RSMK04298 [Ralstonia solanacearum MolK2]
gi|206591144|emb|CAQ56756.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
Length = 351
Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/248 (9%), Positives = 63/248 (25%), Gaps = 45/248 (18%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
++L A + F V +R + G + ++P + + +
Sbjct: 121 LILIAIVAFVVMWVIRKLRGTRP--QEPAYATGGPSLGGDREPYVPSPAAPAAQPAAPVA 178
Query: 73 SINELFPIGTRLN----------------------------KVMRDIVSVYTDFDPKDFL 104
+ G V + V DFD + FL
Sbjct: 179 ASTGTGSAGNASGLGAGAQTAAQAWSLGGPAAPVADAPAAAPVAQQPWGVPADFDTQAFL 238
Query: 105 NEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKI 164
A+ + + ++ ++ I + + F + + V + ++
Sbjct: 239 RNAKVYFIRLQAAWDTANLNDIREFTTPEM---FAEIKMDLADRGTAPNKTDVVSVEAEL 295
Query: 165 INASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
+ ++R ++ ++W + + WV
Sbjct: 296 LGIETHPTEYLASVRF-----------SGMIREDANAPAQPFAEVWNLTKP-TQGSGGWV 343
Query: 225 LISTKLGE 232
L + +
Sbjct: 344 LAGIQQLQ 351
>gi|187922657|ref|YP_001894299.1| import inner membrane translocase subunit Tim44 [Burkholderia
phytofirmans PsJN]
gi|187713851|gb|ACD15075.1| import inner membrane translocase subunit Tim44 [Burkholderia
phytofirmans PsJN]
Length = 330
Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/210 (10%), Positives = 57/210 (27%), Gaps = 23/210 (10%)
Query: 22 FVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIG 81
++ R +G+K + +P + G + +
Sbjct: 141 WLI---RRFMGRKRDSAQPAYA-----GSSPSLNSGGTGYSQEPRYSAPPTGSYLEQQGN 192
Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
+ V FD + FL A+ + + ++ G I + + F +
Sbjct: 193 PLNTPTINAAPVVPAGFDSEAFLRNAKVYFVRLQAAWDVGNTEDIREFTTPEM---FAEV 249
Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201
S + V + +++ N + ++R L+ +
Sbjct: 250 KVDLSSRGAETNQTDVVQLNAELLGVEERANEYFASVRF-----------SGLIREAPGA 298
Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+++W + W+L +
Sbjct: 299 AAEPFVEVWNLSK-ANRPGEGWLLAGIQQV 327
>gi|148550461|ref|YP_001270563.1| import inner membrane translocase subunit Tim44 [Pseudomonas putida
F1]
gi|148514519|gb|ABQ81379.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
putida F1]
Length = 297
Score = 76.9 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/229 (11%), Positives = 71/229 (31%), Gaps = 30/229 (13%)
Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61
+F+ F I+ F + FL R + ++ + + + +
Sbjct: 97 MFMGDGFEGFQIMDFLIVALIAFLVFRFIAARRRQQQPQMAMPGHAPMQREAHAQPAQPS 156
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
+ G + + F+ + FL ARN ++++ +
Sbjct: 157 IFGGSAAPAAAAAPVINAPA---------------WFNEQSFLAAARNHFQSLQQHWDAN 201
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
++ I + V ++ + R +S+ + ++++ + T+
Sbjct: 202 EMDKISEFVTPQMLEFLK---RERAELGDGFQSTYIDNLEVQLDGVEDRADRTDATLTFR 258
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D + + W VR + P W++ +
Sbjct: 259 GVSKNSRFD-QGEV----------FSESWHMVRAQGENQP-WLVAGIRQ 295
>gi|237749468|ref|ZP_04579948.1| hypothetical protein OFBG_01949 [Oxalobacter formigenes OXCC13]
gi|229380830|gb|EEO30921.1| hypothetical protein OFBG_01949 [Oxalobacter formigenes OXCC13]
Length = 305
Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 72/228 (31%), Gaps = 26/228 (11%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F M S L+ A I F + +R G+ + ++ T
Sbjct: 102 FAGMISTV---LMLALIFFAIRFLMRRFTGR-----GKPQDQTAYASQYNDNGYNQSSTP 153
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
G + + N+ G+ + D + DFD FL A++ Y + ++ +
Sbjct: 154 EIGSGLPHQYAGNQTVNTGSGMQ---NDNWGIPVDFDVPAFLRAAKSYYIRMQAAWDKAD 210
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
+H I + ++ + L R + V D +++ N +++
Sbjct: 211 IHDIHEFTTPEMFAEMKLQLQER---GPGPNITDVVSLDAELLGIETLNNEYMASVKF-- 265
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++ S+ ++W R I WVL +
Sbjct: 266 ---------SGMIRESEGAPAEPFAEVWNMTRPI-SKEGGWVLAGIQQ 303
>gi|91086739|ref|XP_971533.1| PREDICTED: similar to GA19976-PA [Tribolium castaneum]
gi|270009728|gb|EFA06176.1| hypothetical protein TcasGA2_TC009023 [Tribolium castaneum]
Length = 319
Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/199 (18%), Positives = 68/199 (34%), Gaps = 3/199 (1%)
Query: 29 GVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVM 88
G+L + EKPF +G G + + + + ++ +
Sbjct: 74 GILPPRPWVEKPFFISSTGGIFEPYVPPEGDGKISPIHMQGAKQKL-QFLEKKSKTMMAI 132
Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148
R I DFD F EA N Y + + + I V R Y + ++ + +
Sbjct: 133 RKIRMFEEDFDTTAFCKEAENIYVKMHELMAKKDWDNITDYVTERAYPEVIHNVENKTIH 192
Query: 149 EK-NVKSSLVGIDDMKIINA-SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
K L + + + + E T+R Q + A YD+ L+ I V
Sbjct: 193 WKLIKNIELPRVVHARCTDVITKENVFGQTTVRFHTQQMLAVYDRFGRLMHGSEIIAKDV 252
Query: 207 IDIWTFVRNIPPSNPNWVL 225
++ F +++ W +
Sbjct: 253 LEYIVFEKHLANVYGKWRI 271
>gi|171464177|ref|YP_001798290.1| import inner membrane translocase subunit Tim44 [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171193715|gb|ACB44676.1| import inner membrane translocase subunit Tim44 [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 303
Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/225 (10%), Positives = 59/225 (26%), Gaps = 26/225 (11%)
Query: 7 DSGDFLILLFAFITFFVF-LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
S LL A + FV +R +L + + + +G
Sbjct: 102 SSSLITGLLIAMLAGFVIMFVIRKLLPSLSSAGQGPNLSSNGMQRTGIDQAPRQEPAFTP 161
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
E P + L FD + FL + + + ++ +G + +
Sbjct: 162 AANAFGGVSAEPEPFQSTL----------PPGFDKQTFLENVKQYFVTLQKAWDQGDLAS 211
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
+ + + F + V + +++ + + +++
Sbjct: 212 LREFTTPEM---FATIQQDLAGRTDGSNQTDVVTINAQLLGIETADGHYFCSVQF----- 263
Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++ +IW + + WVL
Sbjct: 264 ------SGMIRELQGAPASDFSEIWNLSKPVEGLGG-WVLAGISQ 301
>gi|332525837|ref|ZP_08401978.1| import inner membrane translocase subunit Tim44 [Rubrivivax
benzoatilyticus JA2]
gi|332109388|gb|EGJ10311.1| import inner membrane translocase subunit Tim44 [Rubrivivax
benzoatilyticus JA2]
Length = 321
Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 21/226 (9%), Positives = 65/226 (28%), Gaps = 18/226 (7%)
Query: 8 SGDFLILLFAFITFFVF-LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
+ I L A + FFV LR + ++
Sbjct: 110 ANFLTIALLAVVAFFVIRFLLRRFGPRPAAAPAAAGVGALRTGPADWTPPPAPVSPTPVT 169
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ + P+ + + + D + F A+ + + + + +
Sbjct: 170 PVPSAAPVAADAPVAAERTLAPAFVPAAF---DSESFERVAKTIFVRLQAANDSADLDDL 226
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ + F + + + +++ V + K+++ + E+ +++R V
Sbjct: 227 RRFTTPEM---FAELKMDLQDRGSSTQTTDVVEVEAKVVDVAEEDGRQIVSVRYV----- 278
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ ++W V+ + + W + + +
Sbjct: 279 ------GRVREEAGAEPVAFDEVWHLVKPVGDDSRGWAIAGIEQMD 318
>gi|170724288|ref|YP_001751976.1| import inner membrane translocase subunit Tim44 [Pseudomonas putida
W619]
gi|169762291|gb|ACA75607.1| import inner membrane translocase subunit Tim44 [Pseudomonas putida
W619]
Length = 284
Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/229 (10%), Positives = 73/229 (31%), Gaps = 30/229 (13%)
Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61
+F+ I+ F + FL R + ++ + + + + +
Sbjct: 84 MFMGDGFEGLQIMDFLIVALIAFLVFRFIAARRRQQQPQMAAPGHAPFQREAHGQPAQPS 143
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
+ G + + F+ + FL AR+ ++++ +
Sbjct: 144 IFGGSAAPAAPAAPVINAPA---------------WFNEQSFLAAARSHFQSLQQHWDAN 188
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
++ I + V ++ + R +++ + D+++ + T+
Sbjct: 189 EMDKIAEFVTPQMLEFLK---RERADLGDGFQATYIDNLDVQLDGVDDRADRTDATLTFR 245
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D+ +P + W VR + P W++ +
Sbjct: 246 GVSKTSRFDQ------GEP-----FSESWHMVRAPGENQP-WLVAGIRQ 282
>gi|195054150|ref|XP_001993989.1| GH22480 [Drosophila grimshawi]
gi|193895859|gb|EDV94725.1| GH22480 [Drosophila grimshawi]
Length = 353
Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/200 (17%), Positives = 69/200 (34%), Gaps = 3/200 (1%)
Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87
RGV + E+PF +G +F E ++
Sbjct: 79 RGVFPPRPWMERPFHISCTG-GIFEPYVPPEGDGKKSIITTSGAKQKFEFLEKKSKSMLA 137
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
+R I S F +F + A++ Y + + + I + V R Y + ++ +
Sbjct: 138 VRKIRSYEESFSSDEFGSYAQDIYISAHTHMAAKEKYKIREFVTERCYPEMMHNVKDKTI 197
Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
+ + ++S + + E IT+R Q + A YD+ L+ +
Sbjct: 198 HWRFLQSLEPPRLVHARCTEVITKENQFAQITVRFHTQQMLAIYDRFGRLMHGSEILTKD 257
Query: 206 VIDIWTFVRNIPPSNPNWVL 225
V++ F ++I W L
Sbjct: 258 VLEYVVFEKHISNEYGQWRL 277
>gi|255641370|gb|ACU20962.1| unknown [Glycine max]
Length = 181
Score = 76.1 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 9/153 (5%)
Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
L T + F NEA N Y+ I +G + K V ++ + +
Sbjct: 18 LKSAYAIAKLRKTGYSKNQFYNEAANMYKEINTLIAKGDKRTLRKAVTENMFSALKNEIK 77
Query: 144 TRKSNEKNVKSSLVGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDNL 194
R++ V +V + + + + + +T+ I+ + +YD
Sbjct: 78 QRETAWSRVYWEMVEPVVKIRTLRARLIGVDRKDLNKTFIQLTLEILAKQKFEAYDSKGS 137
Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
+++ D V DIW F +++ + W L
Sbjct: 138 VVAGDKSKEVLVRDIWVFEKSMFHAGATWRLCG 170
>gi|221068939|ref|ZP_03545044.1| import inner membrane translocase subunit Tim44 [Comamonas
testosteroni KF-1]
gi|220713962|gb|EED69330.1| import inner membrane translocase subunit Tim44 [Comamonas
testosteroni KF-1]
Length = 332
Score = 76.1 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/245 (8%), Positives = 71/245 (28%), Gaps = 29/245 (11%)
Query: 5 KMDSGDFLILLFAFITFFVFLQLRGVLGKK----------TGNEKPFSGFFSGKYVFSKR 54
M +L+F + + + + ++ ++ + +G G +
Sbjct: 100 GMGEAFANMLMFGLLAMVIMVVVGMIMRRRKPAPAMQSNHSPFAFQGAGNLGGDANAPQA 159
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVM------RDIVSVYTDFDPKDFLNEAR 108
+ +G + + ++ V TDFD + FL A+
Sbjct: 160 RQYNPEKVGNDASARPWEQNHIPEAAAAAGGSMIGSALSGSQNWGVPTDFDAEGFLTAAK 219
Query: 109 NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK-SNEKNVKSSLVGIDDMKIINA 167
++ + ++ + + ++ + + LS R+ + V + D +++
Sbjct: 220 RNFVTLQSAWDRSDITTLRSMMTDEMLSEIRSQLSERESQRAGEPNHTDVLMIDAQLLGI 279
Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
N ++ ++ ++W + W++
Sbjct: 280 EDLGNGYMASVEF-----------SGMIREEASAGPSPFREVWNMTKP-KSGASGWLVAG 327
Query: 228 TKLGE 232
+ +
Sbjct: 328 VQALQ 332
>gi|218459911|ref|ZP_03500002.1| putative translocase transmembrane protein [Rhizobium etli Kim 5]
Length = 59
Score = 76.1 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 175 YITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
IT+RIV Q ISA+YDK + LI D E +V D+WTF R+ +PNW L++T+
Sbjct: 1 QITVRIVSQLISATYDKADALIEGDAENVAEVNDLWTFARDTRSRDPNWKLVATES 56
>gi|325273940|ref|ZP_08140103.1| hypothetical protein G1E_12467 [Pseudomonas sp. TJI-51]
gi|324100911|gb|EGB98594.1| hypothetical protein G1E_12467 [Pseudomonas sp. TJI-51]
Length = 282
Score = 76.1 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/229 (11%), Positives = 70/229 (30%), Gaps = 32/229 (13%)
Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61
+F+ F I+ F + FL R + ++ + + + +
Sbjct: 84 MFMGDGFEGFQIMDFLIVALIAFLVFRFIAARRRQQQPQMAMPGHAPMQREAHGQPAQPS 143
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
+ G + F+ + FL ARN ++++ +
Sbjct: 144 VFGGSAAPAAAPVINAPA-----------------WFNEQSFLAAARNHFQSLQQHWDAN 186
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
++ I + V ++ + R +S+ + ++++ + T+
Sbjct: 187 EMDKIAEFVTPQMLEFLK---RERAELGDGFQSTYIDNLEVQLDGVDDRPDRTDATLTFR 243
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ D+ + W VR + + P W++ +
Sbjct: 244 GVSKNSRLDQG-----------ELFSESWHMVRALGENQP-WLVAGIRQ 280
>gi|264676930|ref|YP_003276836.1| import inner membrane translocase, subunit [Comamonas testosteroni
CNB-2]
gi|262207442|gb|ACY31540.1| import inner membrane translocase, subunit [Comamonas testosteroni
CNB-2]
Length = 333
Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 21/245 (8%), Positives = 70/245 (28%), Gaps = 29/245 (11%)
Query: 5 KMDSGDFLILLFAFITFFVFLQLRGVLGKK----------TGNEKPFSGFFSGKYVFSKR 54
M +L+F + + + + ++ ++ + +G G +
Sbjct: 101 GMGEAFANMLMFGLLAMVIMVVVGMIMRRRKAAPAVQSTSSPFAFQGAGNLGGDVNAPQA 160
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVM------RDIVSVYTDFDPKDFLNEAR 108
+ +G + + ++ V DFD + FL A+
Sbjct: 161 RQYNPEKVGNDASARPWEQNHIPEAAAAAGGSMIGSALSGSQNWGVPADFDAEGFLTAAK 220
Query: 109 NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK-SNEKNVKSSLVGIDDMKIINA 167
++ + ++ + + ++ + + LS R+ + V + D +++
Sbjct: 221 RNFVTLQSAWDRSDITTLRSMMTDEMLAEIRSQLSERESQRAGEPNHTDVLMIDAQLLGI 280
Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
N ++ ++ ++W + W++
Sbjct: 281 EDLGNGYMASVEF-----------SGMIREEASAGPSPFREVWNMTKP-KSGTSGWLVAG 328
Query: 228 TKLGE 232
+ +
Sbjct: 329 VQALQ 333
>gi|226952069|ref|ZP_03822533.1| membrane protein [Acinetobacter sp. ATCC 27244]
gi|294651122|ref|ZP_06728458.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
gi|226837187|gb|EEH69570.1| membrane protein [Acinetobacter sp. ATCC 27244]
gi|292823016|gb|EFF81883.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
Length = 338
Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/195 (12%), Positives = 51/195 (26%), Gaps = 16/195 (8%)
Query: 37 NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT 96
N FS S D I G + M +
Sbjct: 160 NSNQFSRQSSQPTARQTGDNTNIFGQAVGGGAATQSPFGNAPTQAPFGSATMSSGNQLPD 219
Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
+P FL AR + I + I + + +Y + ++ +
Sbjct: 220 GTEPAAFLRVARQRFNHIQSMNTASNIQEIRRYLTPDLYASMYQDIM----ANQDQDVAE 275
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
+ I + E +++R + + +IW FV+++
Sbjct: 276 FSNLNAMIAETATENGQYVVSVRF-----------TGTVSEDLNSLPQPFTEIWHFVKDV 324
Query: 217 PPSNPNWVLISTKLG 231
+WV+ +
Sbjct: 325 GSQQ-DWVVAGIQQA 338
>gi|227822467|ref|YP_002826439.1| hypothetical protein NGR_c19220 [Sinorhizobium fredii NGR234]
gi|227341468|gb|ACP25686.1| hypothetical protein NGR_c19220 [Sinorhizobium fredii NGR234]
Length = 330
Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 4/130 (3%)
Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163
L+ + + ++ A+ +L + L + V +
Sbjct: 203 LDRFETMLKELQAAYAAEDYAALRRLTTPEAMSYLAEELGEDATKGLKNDVREVHLVQGD 262
Query: 164 IINASIEENTVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222
+ A E T Y T+ + + I D+ ++S D E + +++WTF R +
Sbjct: 263 VAEAWNESGTDYATVAMRYESIDVMRDRATGRIVSGDAERPTEAVELWTFARK---RGGD 319
Query: 223 WVLISTKLGE 232
W + + + E
Sbjct: 320 WQVSAIQAVE 329
>gi|209735096|gb|ACI68417.1| 39S ribosomal protein L45, mitochondrial precursor [Salmo salar]
gi|303659089|gb|ADM15945.1| 39S ribosomal protein L45, mitochondrial precursor [Salmo salar]
Length = 317
Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/194 (14%), Positives = 57/194 (29%), Gaps = 2/194 (1%)
Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93
+ + VF K++L E +R I
Sbjct: 75 RQEYMERAINIACTAGVFDPYITPEGDARLSSLSKESLKRRTEQIKQDAASQLAIRKIKE 134
Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153
++F K F +A+ + ++ + + LV R Y + + V+
Sbjct: 135 HESEFTTKAFPVKAQEIFVDAHNALTQFNKEKLHSLVTERCYPEMVRRNRYKTLRWHFVE 194
Query: 154 SSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWT 211
S + S + +T+R+ + A Y + L+ E V++
Sbjct: 195 SLEPPKVVHARCPDMVSKGDMYGQVTVRMHSRQTLAVYGRFGRLMMGSEEEPRDVLEYLV 254
Query: 212 FVRNIPPSNPNWVL 225
R++ W L
Sbjct: 255 LERHLVNHYGMWRL 268
>gi|239817097|ref|YP_002946007.1| import inner membrane translocase subunit Tim44 [Variovorax
paradoxus S110]
gi|239803674|gb|ACS20741.1| import inner membrane translocase subunit Tim44 [Variovorax
paradoxus S110]
Length = 337
Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 21/250 (8%), Positives = 65/250 (26%), Gaps = 36/250 (14%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVL-GKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
+ L++ + ++ +G +P F G + +
Sbjct: 100 GFANILLIGLLVMAGLFVWRMFKARSAASSGANRPGGFAFEGAGNPANASAPAQYSPANV 159
Query: 66 KKKDNLDSINELFPIGTRLNKV----------------------MRDIVSVYTDFDPKDF 103
+ + + FD F
Sbjct: 160 GNDASARPWERNTAAFDAGSSAHGSSLSAAGAAAGGSMIGSALSGSQSWGIPAGFDVDGF 219
Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN-EKNVKSSLVGIDDM 162
L+ A+ ++ + D++ V + ++ + ++ L+ R S+ + V + D
Sbjct: 220 LSAAKRNFVTLQDAWDRADVSMLRSMMTDDMVEEIRSQLADRASHTGGASNKTEVVMLDA 279
Query: 163 KIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222
K++ + ++ ++ G ++W +
Sbjct: 280 KLLGIEELADAYLASVEF-----------SGMIREDASAGPGPFREVWNMTKP-TSGTSG 327
Query: 223 WVLISTKLGE 232
W++ + +
Sbjct: 328 WLVAGVQALQ 337
>gi|261856484|ref|YP_003263767.1| import inner membrane translocase subunit Tim44 [Halothiobacillus
neapolitanus c2]
gi|261836953|gb|ACX96720.1| import inner membrane translocase subunit Tim44 [Halothiobacillus
neapolitanus c2]
Length = 295
Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 23/225 (10%), Positives = 63/225 (28%), Gaps = 37/225 (16%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
MD +I LFA F + LR +
Sbjct: 102 MDF--IIIALFALGAFMLIRALR--------------------KSSQSAASPYARSTAGT 139
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
+ + + + F+ FL A+ + + ++ +
Sbjct: 140 MADQAPQPSSIGSFSNSSAGSAQAPLPNAPAWFNEDSFLQGAKAHFTNLQRAWDANDLKT 199
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
+++ + F + R + V + ++++ S E +++ ++ G
Sbjct: 200 MQEYFTPEL---FLELARERARIGDENNVTEVQSLNAQLLDLSREGDSIVASVLFQG--- 253
Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++ D + +IW + +W+++ +
Sbjct: 254 ---------MVREDYGQPEPIAEIWHVRHTADSAQGDWLIVGIQQ 289
>gi|91976179|ref|YP_568838.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
palustris BisB5]
gi|91682635|gb|ABE38937.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
palustris BisB5]
Length = 331
Score = 75.7 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/190 (13%), Positives = 55/190 (28%), Gaps = 14/190 (7%)
Query: 42 SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPK 101
+ + + G + + D +
Sbjct: 153 QRRKNPQPAPAYASNAGPTVGPGPEPSYRTGFGFGGGGGSAPNAPPLEIKPE-----DYE 207
Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDD 161
F + ++ V + +L + F L+ K+ K S V +
Sbjct: 208 AF----ERLLGDVQSAWSNEDVEKLNQLTTPEMASYFAKDLAENKAANDINKVSDVKLLQ 263
Query: 162 MKIINASIEENTVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSN 220
+ + E T Y T+ + + + ++ N L+S E +V ++WTF R
Sbjct: 264 GDLAESWREGETDYATVAMRFSLVDKTLERGTNRLVSGS-ETPIEVTEVWTFARRSGAD- 321
Query: 221 PNWVLISTKL 230
W L + +
Sbjct: 322 --WELSAIQQ 329
>gi|71909645|ref|YP_287232.1| import inner membrane translocase, subunit Tim44 [Dechloromonas
aromatica RCB]
gi|71849266|gb|AAZ48762.1| Mitochondrial import inner membrane translocase, subunit Tim44
[Dechloromonas aromatica RCB]
Length = 288
Score = 75.7 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/229 (11%), Positives = 64/229 (27%), Gaps = 38/229 (16%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
+ +L A I G+F K + +
Sbjct: 95 NFMMMALLAVAVIGVI--------------------GYFMRKKAAASQQGGMQYAGANAN 134
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIV---SVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
+N + P G + ++ FD + F+ A+ ++ + S G +
Sbjct: 135 YGNNAPHQPDFIPAGGSAAAPLASATTGGNIPAGFDVEGFVRNAKVNFIRLQASNDAGNL 194
Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
I + + F + + + V + ++I+ + E + +++R
Sbjct: 195 DDIREFTSPEM---FAEIKMEMAERGNAKQETDVVQLNAEVIDVAEEPSRYIVSVRF--- 248
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
L+ +IW + ++ W L + +
Sbjct: 249 --------TGLIREEKDAAAAPFDEIWHMTKP-TDNSRGWTLAGIQQVQ 288
>gi|299769068|ref|YP_003731094.1| hypothetical protein AOLE_04120 [Acinetobacter sp. DR1]
gi|298699156|gb|ADI89721.1| hypothetical protein AOLE_04120 [Acinetobacter sp. DR1]
Length = 330
Score = 75.7 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 22/202 (10%), Positives = 54/202 (26%), Gaps = 18/202 (8%)
Query: 32 GKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDI 91
KK P++ G+ F + G +
Sbjct: 145 KKKLAANNPYAPNNDGQNPFGRSAAPQATPRNAGDNTNIFGQSVGGGAATQAPFGGATTS 204
Query: 92 V--SVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNE 149
+ +P FL AR + I + I + + +Y + + +
Sbjct: 205 NGNQLPDGSEPAAFLRIARQRFNHIQSMNTASNIEEIRRYLTPELYSSMYNDIMENQDQ- 263
Query: 150 KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDI 209
+ + +++++ E +++R + + +I
Sbjct: 264 ---DVAEFSNLNAMVVDSATENGQYVVSVRF-----------TGTVSEDLNSLPQPFTEI 309
Query: 210 WTFVRNIPPSNPNWVLISTKLG 231
W FV+ +WV+ +
Sbjct: 310 WHFVKPAGSQQ-DWVVAGIQQA 330
>gi|299531492|ref|ZP_07044898.1| import inner membrane translocase, subunit [Comamonas testosteroni
S44]
gi|298720455|gb|EFI61406.1| import inner membrane translocase, subunit [Comamonas testosteroni
S44]
Length = 325
Score = 75.7 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 21/245 (8%), Positives = 70/245 (28%), Gaps = 29/245 (11%)
Query: 5 KMDSGDFLILLFAFITFFVFLQLRGVLGKK----------TGNEKPFSGFFSGKYVFSKR 54
M +L+F + + + + ++ ++ + +G G +
Sbjct: 93 GMGEAFANMLMFGLLAMVIMVVVGMIMRRRKAAPAVQSTSSPFAFQGAGNLGGDVNAPQA 152
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVM------RDIVSVYTDFDPKDFLNEAR 108
+ +G + + ++ V DFD + FL A+
Sbjct: 153 RQYNPEKVGNDASARPWEQNHIPEAAAAAGGSMIGSALSGSQNWGVPADFDAEGFLTAAK 212
Query: 109 NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK-SNEKNVKSSLVGIDDMKIINA 167
++ + ++ + + ++ + + LS R+ + V + D +++
Sbjct: 213 RNFVTLQSAWDRSDITTLRSMMTDEMLAEIRSQLSERESQRAGEPNHTDVLMIDAQLLGI 272
Query: 168 SIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
N ++ ++ ++W + W++
Sbjct: 273 EDLGNGYMASVEF-----------SGMIREEASAGPSPFREVWNMTKP-KSGTSGWLVAG 320
Query: 228 TKLGE 232
+ +
Sbjct: 321 VQALQ 325
>gi|330970256|gb|EGH70322.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
syringae pv. aceris str. M302273PT]
Length = 281
Score = 75.7 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/232 (11%), Positives = 72/232 (31%), Gaps = 39/232 (16%)
Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58
+F+ F IL+ I F +F R + ++ + + + Y
Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPPYQRETSQPAQ 140
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
G+ +++ F+ + FL+ AR ++++ + +
Sbjct: 141 NPIF------------------GSSSPASSAPVINAPAWFNEQRFLDAARGHFQSLQEHW 182
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
++ I + V ++ Q R +S+ + +++ + T+
Sbjct: 183 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTFIENLQVQLDGVDDRADKTIATL 239
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D + + W R + P W++ +
Sbjct: 240 TFSGVSKTSRFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 279
>gi|312963949|ref|ZP_07778420.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
fluorescens WH6]
gi|311281984|gb|EFQ60594.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
fluorescens WH6]
Length = 289
Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/228 (12%), Positives = 76/228 (33%), Gaps = 36/228 (15%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F M F IL+ A I F VF R + ++ ++ + + + + + ++
Sbjct: 96 FQGM--QIFDILIMAVIAFLVF---RFIAARRRKQQEHLAPAGAPMQREAFEQKPAMGSI 150
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
G + R +++ F+ + F+ AR+ ++++ + +
Sbjct: 151 FGG----------------SAAPAAARPVINAPAWFNEERFVEAARSHFQSLQQHWDANE 194
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
+ I + V ++ + R +S+ + +++ + T+ G
Sbjct: 195 MDKISEFVTPQLLEFLK---RERADLGDGFQSTYIDDLRVQLDGVDDRADKTIATLTFSG 251
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++ +D+ + W R P W++ +
Sbjct: 252 VSKTSRFDQG-----------EAFSESWNMERAQGDDQP-WLVAGIRQ 287
>gi|260898311|ref|ZP_05906807.1| import inner membrane translocase, subunit Tim44 [Vibrio
parahaemolyticus Peru-466]
gi|260901532|ref|ZP_05909927.1| import inner membrane translocase, subunit Tim44 [Vibrio
parahaemolyticus AQ4037]
gi|308088422|gb|EFO38117.1| import inner membrane translocase, subunit Tim44 [Vibrio
parahaemolyticus Peru-466]
gi|308110872|gb|EFO48412.1| import inner membrane translocase, subunit Tim44 [Vibrio
parahaemolyticus AQ4037]
Length = 237
Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 51/152 (33%), Gaps = 8/152 (5%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +RG+LG K G+ + SK ++ + +
Sbjct: 90 GIQFMDILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNASKFEQPNMQNFEQQP 149
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ T + FD F+N +R Y + ++ ++ I
Sbjct: 150 NTN--------AGGFTGFGAQTDVPHNYPPGFDQAAFINGSREHYRILQGAWNHNQLDTI 201
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG 158
E+ V +++D + + + +
Sbjct: 202 EEYVSPSLFEDLKAERAKLEGEQHTDVMYVDA 233
>gi|229593438|ref|YP_002875557.1| hypothetical protein PFLU6076 [Pseudomonas fluorescens SBW25]
gi|229365304|emb|CAY53654.1| putative exported protein [Pseudomonas fluorescens SBW25]
Length = 289
Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/228 (12%), Positives = 76/228 (33%), Gaps = 36/228 (15%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F M F IL+ A I F VF R + ++ ++ + + + + ++
Sbjct: 96 FQGM--QIFDILIMAVIAFLVF---RFIAARRRKQQEHLAPAGAPMQREVFEQKPAMGSI 150
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
G + R +++ F+ + F+ AR+ ++++ + +
Sbjct: 151 FGG----------------SAAPAAARPVINAPAWFNEERFVEAARSHFQSLQQHWDANE 194
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
+ I + V ++ + R +S+ + +++ + T+ G
Sbjct: 195 MDKISEFVTPQLLEFLK---RERADLGDAFQSTYIDDLRVQLEGVDDRADKTIATLTFSG 251
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++ +D + + W R + P W++ +
Sbjct: 252 VSKTSRFD-QGEV----------FSESWNMERAQGDNQP-WLVAGIRQ 287
>gi|319795430|ref|YP_004157070.1| import inner membrane translocase subunit tim44 [Variovorax
paradoxus EPS]
gi|315597893|gb|ADU38959.1| import inner membrane translocase subunit Tim44 [Variovorax
paradoxus EPS]
Length = 341
Score = 75.4 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 24/247 (9%), Positives = 69/247 (27%), Gaps = 37/247 (14%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNE-----KPFSGFFSGKYVFSKRDERGIITLGKG 65
+L+FA + + + R T + + S ++ +
Sbjct: 107 IGLLIFAALAVWRIFKARSAASNGTNGQGGFAFQGAGASPSNASAPAQYSPNNVGNDASA 166
Query: 66 KKKDNLDSINELFPIGTR-------------------LNKVMRDIVSVYTDFDPKDFLNE 106
+ + + + P + T FD FL
Sbjct: 167 RPWERSATAFDATPADGDRHGSSLSAAGAAAGGSMIGSALGGSQSWGIPTGFDVDGFLGA 226
Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN-EKNVKSSLVGIDDMKII 165
A+ ++ + D++ V + ++ + ++ L+ R S+ + V + D K++
Sbjct: 227 AKRNFVTLQDAWDRADVSMLRSMMTDEMVEEIRTQLADRASHTGGASNKTEVVMLDAKLL 286
Query: 166 NASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
+ ++ ++ G ++W + W++
Sbjct: 287 GIEELPDAYMASVEF-----------SGMIREDASAGPGPFREVWNMTKP-TSGGGGWLV 334
Query: 226 ISTKLGE 232
+ +
Sbjct: 335 AGVQALQ 341
>gi|291237324|ref|XP_002738585.1| PREDICTED: mitochondrial ribosomal protein L45-like [Saccoglossus
kowalevskii]
Length = 318
Score = 75.4 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 48/140 (34%), Gaps = 7/140 (5%)
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
+R I +F+ KDF +A++ + + I+ + +++D +
Sbjct: 138 LRKIRKFDPEFNTKDFAKQAQHIFI-----KAHSALQDIKNFLLMNIHEDMVWGFKYKTV 192
Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
V+S + S T+R + A YD+ ++
Sbjct: 193 RWNWVESIEKPRVVHIRCTDMISKGNTYAQATVRFHSKQTLAIYDRFGRIMQGSETSPKD 252
Query: 206 VIDIWTFVRNIPPSNPNWVL 225
V++ F +++ +W +
Sbjct: 253 VLEYVVFEKHLMDKYGSWRI 272
>gi|237801765|ref|ZP_04590226.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|237806703|ref|ZP_04593407.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331024624|gb|EGI04680.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331027817|gb|EGI07872.1| Tim44-like domain-contain protein [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 280
Score = 75.4 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 27/232 (11%), Positives = 73/232 (31%), Gaps = 40/232 (17%)
Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58
+F+ F IL+ I F +F R + ++ + + + + + +
Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAPAGAPYQRETSQPTQN 140
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
I G+ ++ F+ + FL AR ++++ +
Sbjct: 141 PI-------------------FGSSSPASAPPAINAPAWFNEERFLEAARGHFQSLQQHW 181
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
++ I + V ++ Q R +S+ + ++++ + T+
Sbjct: 182 DANEMDKIAEFVTPQMLQFLK---KERADLGDGFQSTYIENLNVQLDGVDDRADKTIATL 238
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D + + W R + N W++ +
Sbjct: 239 TFSGVSKTSRFD-QGEV----------FSESWNMER-LQGDNQPWLVAGIRQ 278
>gi|167036388|ref|YP_001671619.1| import inner membrane translocase subunit Tim44 [Pseudomonas putida
GB-1]
gi|166862876|gb|ABZ01284.1| import inner membrane translocase subunit Tim44 [Pseudomonas putida
GB-1]
Length = 284
Score = 75.4 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 25/229 (10%), Positives = 72/229 (31%), Gaps = 30/229 (13%)
Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61
+F+ F I+ F + FL R + ++ + + + +
Sbjct: 84 MFMGDGFEGFQIMDFLIVALIAFLVFRFIAARRRQQQPQMAMPGHAPMQREAHAQPAQPS 143
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
+ G + + F+ ++FL ARN ++++ +
Sbjct: 144 IFGGSAAPAAAAAPVINAPA---------------WFNEQNFLAAARNHFQSLQQHWDAN 188
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
++ I + V ++ + R +++ + ++++ + T+
Sbjct: 189 EMDKIAEFVTPQMLEFLK---RERAELGDGFQATYIDNLEVQLDGLDDRTDRTDATLTFR 245
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D + + W VR + P W++ +
Sbjct: 246 GVSKNSRFD-QGEV----------FSESWHMVRAQGENQP-WLVAGIRQ 282
>gi|56753329|gb|AAW24868.1| SJCHGC06217 protein [Schistosoma japonicum]
Length = 326
Score = 75.4 bits (183), Expect = 7e-12, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 64/209 (30%), Gaps = 11/209 (5%)
Query: 27 LRGVLGKKTG------NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPI 80
LR L ++ G +F L + +
Sbjct: 62 LRRRL-RRNGMLPPLLFYDRPINIGHTGQIFDPYVPPDGDGQTSLLSPKRLTHLKDELVD 120
Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE--KLVDSRVYQDF 138
+ K + I S F K F +EA N Y + + + +LV + D
Sbjct: 121 KGKNYKDLLLIRSHEPSFKSKPFASEAENIYIEAHNLLQNYRQNESRLFELVTEKALVDM 180
Query: 139 NDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196
L R K V + + S + +T+R Q I + Y++ L+
Sbjct: 181 TADLRLRTLRWKFVGNIEPPKVVHIRCKEYLSKGNHYAQVTVRFYTQQILSIYNRFGRLL 240
Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
+P+ V++ F ++I W L
Sbjct: 241 YGNPDTAVDVLEYVVFEKHISDEYGTWRL 269
>gi|300309983|ref|YP_003774075.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
gi|300072768|gb|ADJ62167.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
Length = 242
Score = 75.0 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 24/226 (10%), Positives = 63/226 (27%), Gaps = 17/226 (7%)
Query: 8 SGDFLILL-FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
+ +L A I + +R +K+ +P + + K
Sbjct: 29 ASMISTILTVALIALAIMFVVRMFR-RKSEASQPAPAWAGAAPQAADNASATPQIGSMLK 87
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ + + G N V FD F+ A+ + + ++ + ++ I
Sbjct: 88 TDQSAAAATQGGFGGGFGNAEQAPAYGVPAGFDTVGFVRNAKTYFIRLQAAWDKADINDI 147
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
+ ++ + + R + V D +++ N +++
Sbjct: 148 REFTTPEMFAELRLQIQER---GAASNQTDVVSLDAEVLGVETVGNDYLASVKF------ 198
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ + +IW + WVL + +
Sbjct: 199 -----FGFIKEDPTASPAQFAEIWNLSKPAAGQGG-WVLAGIQQID 238
>gi|262278111|ref|ZP_06055896.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|262258462|gb|EEY77195.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
Length = 329
Score = 75.0 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 24/207 (11%), Positives = 61/207 (29%), Gaps = 24/207 (11%)
Query: 33 KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDI- 91
+K G +K +G ++ G + ++ D+ N T
Sbjct: 139 RKLGAKKKLAGNNPYAPNNGGQNPFGRSAAPQATPRNAGDNTNIFGQSVTGGAATQAPFG 198
Query: 92 -------VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST 144
+ +P FL AR + I + I + + +Y + +
Sbjct: 199 GVTTSNGNQLPDGSEPAAFLRIARQRFNHIQSMNTASNIEEIRRYLTPELYTSMYNDIME 258
Query: 145 RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFG 204
+ + + +++++ E +++R + +
Sbjct: 259 NQDQ----DVAEFSNLNAMVVDSANENGQYVVSVRF-----------TGNVSEDLNSLPQ 303
Query: 205 KVIDIWTFVRNIPPSNPNWVLISTKLG 231
+IW FV++ +WV+ +
Sbjct: 304 PFTEIWHFVKSAGSQQ-DWVVAGIQQA 329
>gi|73853856|ref|NP_001027509.1| 39S ribosomal protein L45, mitochondrial precursor [Xenopus
(Silurana) tropicalis]
gi|82249321|sp|Q4QQQ4|RM45_XENTR RecName: Full=39S ribosomal protein L45, mitochondrial;
Short=L45mt; Short=MRP-L45; Flags: Precursor
gi|67867480|gb|AAH98093.1| hypothetical protein mgc108142 [Xenopus (Silurana) tropicalis]
Length = 309
Score = 75.0 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 51/160 (31%), Gaps = 3/160 (1%)
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
K+ L + +R + ++F K F +A+ + A + H +
Sbjct: 101 SKEGLKQRTQQLKQTAASQLAIRKVKEYDSEFTTKTFPEKAQELFIAAHQCLTKFDRHEL 160
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQF 184
LV R Y + R V+S + S +T+R+ +
Sbjct: 161 HTLVTERCYPEMVRGNRYRTIQWSFVESIEAPRVVQVRCPEMVSKGNLYAQVTVRMHNKQ 220
Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
YD+ ++ E V++ F R++ W
Sbjct: 221 SLTIYDRFGRVMCGSEE-PRDVLEYVVFERHMVNPYGTWR 259
>gi|17545178|ref|NP_518580.1| hypothetical protein RSc0459 [Ralstonia solanacearum GMI1000]
gi|17427469|emb|CAD13987.1| hypothetical transmembrane protein [Ralstonia solanacearum GMI1000]
Length = 356
Score = 74.6 bits (181), Expect = 9e-12, Method: Composition-based stats.
Identities = 24/255 (9%), Positives = 62/255 (24%), Gaps = 45/255 (17%)
Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
S LI + AF+ ++ +LRG ++ + +
Sbjct: 117 SNLILIAIIAFVVMWIIRKLRGSRPQEPAYATGGPSLSGDREPYVPAPAAPAAQPAAPAA 176
Query: 68 KDNLDSINELFPIGTRLNKVM------------------------------RDIVSVYTD 97
+ + + V D
Sbjct: 177 QPAAPVAASTGTGSAGNTSGLGAGAQTAAQAWSLGGPAAPAANAPAAAPAAQQPWGVPAD 236
Query: 98 FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157
FD + FL A+ + + ++ G ++ I + + F + + V
Sbjct: 237 FDTQAFLRNAKVYFVRLQAAWDAGNLNDIREFTTPEM---FAEIKMDLTDRGTVPNKTDV 293
Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217
+ +++ ++R ++ ++W +
Sbjct: 294 VSVEAELLGIETHPTEYLASVRF-----------SGMIREETSAPAQPFAEVWNLTKP-T 341
Query: 218 PSNPNWVLISTKLGE 232
+ WVL + +
Sbjct: 342 QGSGGWVLAGIQQLQ 356
>gi|240138844|ref|YP_002963319.1| hypothetical protein MexAM1_META1p2250 [Methylobacterium extorquens
AM1]
gi|240008816|gb|ACS40042.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
Length = 324
Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/220 (15%), Positives = 66/220 (30%), Gaps = 20/220 (9%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
I I F V + +R ++ G + R + G
Sbjct: 123 IFQIGLIAFLVMMAVRFFRRRQEG---------QPAMAGNAPHARSGLPPQGGMNSGVNP 173
Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
L G + D + F S + I ++ V A+ +L
Sbjct: 174 MGGGLGAGGLGGARPQPVQPVQVQPDDFQAF----ERSLQEIQSAYGREDVAALRRLATP 229
Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK- 191
+ F + L + + S V + + A E + T+ + +++
Sbjct: 230 EMVSYFEEDLRANAARGVVNRISDVKLLQGDLSEAWREGPAEFATVAMRFSLRDEVFERA 289
Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
N + + P+ + WTFVR W+L + + G
Sbjct: 290 SNRHVENGPQEAKEF---WTFVR---EPGGPWLLSAIQQG 323
>gi|92115162|ref|YP_575090.1| import inner membrane translocase, subunit Tim44 [Chromohalobacter
salexigens DSM 3043]
gi|91798252|gb|ABE60391.1| import inner membrane translocase, subunit Tim44 [Chromohalobacter
salexigens DSM 3043]
Length = 272
Score = 74.6 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/221 (12%), Positives = 62/221 (28%), Gaps = 44/221 (19%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
ILL A I +F F LR R + G +
Sbjct: 92 FLDILLVALIAWFAFRLLR--------------------------ARRVATSEGPQHQAR 125
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKL 129
+ M + FD + FL A+ + + ++ + I++
Sbjct: 126 QPHQEATTTSPFSSAGTSMPSSGATPEWFDKERFLGGAKEHFMTLQRAWDNNDLARIQEY 185
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
V +Y + + + +N + + ++ + ++ G
Sbjct: 186 VTPTLYNLLREERAQQPANN----RTEIVRLFAELGDVREIGQQAEASVLFHG-----VL 236
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
D++ + + W +R++ P W + +
Sbjct: 237 DENGE--------RNEFNETWHLIRDLREGAP-WYVQGIEQ 268
>gi|121603693|ref|YP_981022.1| import inner membrane translocase subunit Tim44 [Polaromonas
naphthalenivorans CJ2]
gi|120592662|gb|ABM36101.1| import inner membrane translocase, subunit Tim44 [Polaromonas
naphthalenivorans CJ2]
Length = 330
Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/252 (8%), Positives = 67/252 (26%), Gaps = 36/252 (14%)
Query: 5 KMDSGDFLILLFAFIT----FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60
+ I++FA + + +R + G+ + + I
Sbjct: 91 GLGGAFSQIIMFALLALVVMVVIGFVMRKLKGRGASAPGATRSQPPFAFQGAGNAAEASI 150
Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVM-------------------RDIVSVYTDFDPK 101
D+ + T L M V FD
Sbjct: 151 PRSYSPSNVGNDASARPWERNTTLFDNMGTAAAPAAGGSMIGSGLSGSQSWGVPAGFDAD 210
Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN-EKNVKSSLVGID 160
FL + ++ + D++ + + ++ + + L+ R+++ + V +
Sbjct: 211 GFLKACKANFVTLQDAWDRSDIQNLRSMMTDDMLEQIKTQLADRETHTGGVSNKTEVVML 270
Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN 220
+ +++ + ++ ++ ++W +
Sbjct: 271 NAQLLGIEEMSDVYMASVEF-----------SGMIKEDASSGASPFREVWNMTKP-RSGG 318
Query: 221 PNWVLISTKLGE 232
W++ + +
Sbjct: 319 SGWLVAGVQALQ 330
>gi|291615430|ref|YP_003525587.1| import inner membrane translocase subunit Tim44 [Sideroxydans
lithotrophicus ES-1]
gi|291585542|gb|ADE13200.1| import inner membrane translocase subunit Tim44 [Sideroxydans
lithotrophicus ES-1]
Length = 275
Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/227 (12%), Positives = 65/227 (28%), Gaps = 41/227 (18%)
Query: 5 KMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGK 64
M G L+ + F + L + +K ++P + + E
Sbjct: 90 GMGEGMGSFLMI-MLGVFAVMMLISMFRRK---QEPAMQYAGAAAPYGGTQE-------- 137
Query: 65 GKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVH 124
P + TDF + FL A+ S+ + + +
Sbjct: 138 --------------PAQAYGGYAPVAAAGIPTDFPVESFLRSAKTSFIRLQAANDRKDLD 183
Query: 125 AIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
I + + F + + + + V + + ++ E + ++R+ GQ
Sbjct: 184 DIREYTTPEM---FAEVSMQIRERGDAPQKTDVDVVNADLLEVVTENDYAIASVRMSGQL 240
Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ + +IW +N+ W+L +
Sbjct: 241 ----RENNG--------TPESFDEIWHVQKNLKDDKSVWLLAGIQQV 275
>gi|254561446|ref|YP_003068541.1| hypothetical protein METDI3032 [Methylobacterium extorquens DM4]
gi|254268724|emb|CAX24685.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
Length = 319
Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/220 (14%), Positives = 63/220 (28%), Gaps = 25/220 (11%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
I I F V + +R ++ G + ++
Sbjct: 123 IFQIGLIAFLVMMAVRFFRRRQEG--------------QPAMAGNAPHARSGLPPQGGMN 168
Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
G + D + F S + I + V A+ +L
Sbjct: 169 PGVNPMGGGLGGARPQPVQPVQVQPDDFQAF----ERSLQEIQSGYGREDVAALRRLATP 224
Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK- 191
+ F + L + + S V + + A E + T+ + +++
Sbjct: 225 EMVSYFEEDLRANAARGVVNRISDVKLLQGDLSEAWREGPAEFATVAMRFSLRDEVFERA 284
Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
N + + P+ + WTFVR W+L + + G
Sbjct: 285 SNRHVENGPQEAKEF---WTFVR---EPGGPWLLSAIQQG 318
>gi|255081604|ref|XP_002508024.1| mitochondrial protein translocase family [Micromonas sp. RCC299]
gi|226523300|gb|ACO69282.1| mitochondrial protein translocase family [Micromonas sp. RCC299]
Length = 341
Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 42/144 (29%), Gaps = 9/144 (6%)
Query: 93 SVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNV 152
F +F EA Y I E V ++ LV + D TR+
Sbjct: 173 QQIKGFTRDNFKAEAGQLYRQISQLIAENHVTSLRHLVTEKALTDIKREAKTREKAGWGK 232
Query: 153 KSSLVGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203
+ + + +T+ A+YD L++ DP F
Sbjct: 233 IVWEIRDLEKPVTLQGRMIFPNPQDKQMAFAQMTVGFRSHQRYAAYDAKGRLVAGDPNGF 292
Query: 204 GKVIDIWTFVRNIPPSNPNWVLIS 227
V D+W N W L +
Sbjct: 293 LPVEDVWVLEHAFKLPNARWRLAA 316
>gi|301093253|ref|XP_002997475.1| Mitochondrial Protein Translocase (MPT) Family [Phytophthora
infestans T30-4]
gi|262110731|gb|EEY68783.1| Mitochondrial Protein Translocase (MPT) Family [Phytophthora
infestans T30-4]
Length = 467
Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/193 (15%), Positives = 73/193 (37%), Gaps = 4/193 (2%)
Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF 98
+ + K ++ + + + L SI + T + +++I DF
Sbjct: 265 QQTTKQVKDKISDAQEEVLEVWETSQNPWVYRLSSIYDGLFGETPMAVAIKEIRRAEPDF 324
Query: 99 DPKDFLNEARNS-YEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157
+++ ++++F G ++K Y N ++ RKS + ++
Sbjct: 325 ILEEWKENIEEVVLPGVLEAFLRGNSRDLKKWFGEAAYSRMNIAIRERKSEGLVMDPHVL 384
Query: 158 GIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVR-- 214
ID++++I A+ E+ I +R Q I+ +++ ++ + I+ F R
Sbjct: 385 SIDNVEVIEATAEDKQAPIILMRFQAQQINCIRNREGEVVEGSEDEVLAYYYIFAFQRDY 444
Query: 215 NIPPSNPNWVLIS 227
+ W ++
Sbjct: 445 DEEQETLRWRIVD 457
>gi|163851677|ref|YP_001639720.1| import inner membrane translocase subunit Tim44 [Methylobacterium
extorquens PA1]
gi|163663282|gb|ABY30649.1| import inner membrane translocase subunit Tim44 [Methylobacterium
extorquens PA1]
Length = 319
Score = 74.2 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/220 (14%), Positives = 64/220 (29%), Gaps = 25/220 (11%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
I I F V + +R ++ G + ++
Sbjct: 123 IFQIGLIAFLVMMAVRFFRRRQEG--------------QPAMAGNAPHARSGLPPQGGMN 168
Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
G + D + F S + I ++ V A+ +L
Sbjct: 169 PGVNPMGGGLGGARPQPVQPVQVQPDDFQAF----ERSLQEIQSAYGREDVAALRRLATP 224
Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK- 191
+ F + L + + S V + + A E + T+ + +++
Sbjct: 225 EMVSYFEEDLRANAARGVVNRISDVKLLQGDLSEAWREGPAEFATVAMRFSLRDEVFERA 284
Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
N + + P+ + WTFVR W+L + + G
Sbjct: 285 SNRHVENGPQEAKEF---WTFVR---EPGGPWLLSAIQQG 318
>gi|218530483|ref|YP_002421299.1| import inner membrane translocase subunit Tim44 [Methylobacterium
chloromethanicum CM4]
gi|218522786|gb|ACK83371.1| import inner membrane translocase subunit Tim44 [Methylobacterium
chloromethanicum CM4]
Length = 319
Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/220 (14%), Positives = 64/220 (29%), Gaps = 25/220 (11%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
I I F V + +R ++ G + ++
Sbjct: 123 IFQIGLIAFLVMMAVRFFRRRQEG--------------QPAMAGNAPHARSGLPPQGGMN 168
Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
G + D + F S + I ++ V A+ +L
Sbjct: 169 PGVNPMGGGLGGARPQPVQPVQVQPHDFQAF----ERSLQEIQSAYGREDVAALRRLATP 224
Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK- 191
+ F + L + + S V + + A E + T+ + +++
Sbjct: 225 EMVSYFEEDLRANAARGVVNRISDVKLLQGDLSEAWREGPAEFATVAMRFSLRDEVFERA 284
Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
N + + P+ + WTFVR W+L + + G
Sbjct: 285 SNRHVENGPQEAKEF---WTFVR---EPGGPWLLSAIQQG 318
>gi|313111531|ref|ZP_07797330.1| hypothetical protein PA39016_003370006 [Pseudomonas aeruginosa
39016]
gi|310883832|gb|EFQ42426.1| hypothetical protein PA39016_003370006 [Pseudomonas aeruginosa
39016]
Length = 283
Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/229 (9%), Positives = 66/229 (28%), Gaps = 33/229 (14%)
Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61
+F+ +L I F+ R + ++ + +G
Sbjct: 87 MFMGDGFEGIQMLDILLIALVAFIAFRFIAARRR------------------QQNQGQPA 128
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
+ G +++ + F+ + F+ AR + ++ +
Sbjct: 129 MAGHAPMQREMPAQAPIFGGAAATAAPSPVINAPSWFNEERFVGAAREHFMSLQQHWDAN 188
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
++ I + V ++ R +S+ + +++ + + T+
Sbjct: 189 EMDKIAEFVTPQM---LQWLKQERAEIGDAYQSTYIDNLVVQLDGVDDQADKTIATLTFS 245
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D+ + W R + P W++ +
Sbjct: 246 GVSKTSRFDQG-----------EAFSESWRMERAQGENQP-WLVAGIRQ 282
>gi|303278680|ref|XP_003058633.1| mitochondrial protein translocase family [Micromonas pusilla
CCMP1545]
gi|226459793|gb|EEH57088.1| mitochondrial protein translocase family [Micromonas pusilla
CCMP1545]
Length = 335
Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 13/143 (9%)
Query: 98 FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL- 156
F + FL+ A+ Y + + G + L R +
Sbjct: 161 FTKEGFLDTAKEVYAEVNELIARGDHAKLRHLCSGSAASHVKREDKARSQGGWDRVEWKL 220
Query: 157 --------VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208
V + + T++ + A+YDK L++ DPE V D
Sbjct: 221 LEHVQTPRVLQARLCSPAGDPAVSWAQFTVQFKTRETFAAYDKRGNLVAGDPEEVLVVED 280
Query: 209 IWTFVRNIPP----SNPNWVLIS 227
W + N W L +
Sbjct: 281 AWVLEHGVGESNSKKNARWRLAA 303
>gi|218894631|ref|YP_002443501.1| hypothetical protein PLES_59241 [Pseudomonas aeruginosa LESB58]
gi|218774860|emb|CAW30678.1| hypothetical protein PLES_59241 [Pseudomonas aeruginosa LESB58]
Length = 284
Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/229 (10%), Positives = 72/229 (31%), Gaps = 32/229 (13%)
Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61
+F+ +L I F+ R + ++ ++++
Sbjct: 87 MFMGDGFEGIQMLDILLIALVAFIAFRFIAARRR-----------------QQNQGQPAM 129
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
G + + + +F +++ + F+ + F+ AR + ++ +
Sbjct: 130 AGHAPMQREMPAQAPIFGGAAAAAAAPSPVINAPSWFNEERFVGAAREHFMSLQQHWDAN 189
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
++ I + V ++ R +S+ + D+++ + + T+
Sbjct: 190 EMDKIAEFVTPQM---LQWLKQERAEIGDAYQSTYIDNLDVQLDGVDDQADKTIATLTFS 246
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D+ + W R + P W++ +
Sbjct: 247 GVSKTSRFDQG-----------EAFSESWRMERAQGENQP-WLVAGIRQ 283
>gi|75676350|ref|YP_318771.1| hypothetical protein Nwi_2165 [Nitrobacter winogradskyi Nb-255]
gi|74421220|gb|ABA05419.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
Length = 312
Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/172 (14%), Positives = 49/172 (28%), Gaps = 9/172 (5%)
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ G V T D + F I ++
Sbjct: 148 RNAPAYAGPTPGSAAQTNARSGLGFGSVSNAAPLEITPSDYETF----ERLLGEIQAAWS 203
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
+ V+ + L + F + L + S V + + A E T Y T+
Sbjct: 204 KEDVNTLHTLATPEMVSYFTEDLRANDARGVVNTVSDVKLLQGDLAEAWREGVTDYATVA 263
Query: 180 IVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ I + ++ ++ + + +IWTF R W L + +
Sbjct: 264 LRYSLIDKTTERASGRIVDG-GDQPQEAAEIWTFARR---DGGKWELSAIQQ 311
>gi|188581463|ref|YP_001924908.1| import inner membrane translocase subunit Tim44 [Methylobacterium
populi BJ001]
gi|179344961|gb|ACB80373.1| import inner membrane translocase subunit Tim44 [Methylobacterium
populi BJ001]
Length = 318
Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/220 (15%), Positives = 61/220 (27%), Gaps = 26/220 (11%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
I I V L +R ++ G G
Sbjct: 123 IFQIGLIALLVMLAVRFFRRRQEG---------------QPAMAGNSAYARSGPPPQGGA 167
Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
+ G R D + F S I ++ V A+ +L
Sbjct: 168 NPGMNPMGGGYGGGAARPQPVQVQPDDFQAF----ERSLNEIQAAYGREDVAALRRLATP 223
Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK- 191
+ F + L + + S V + + A E + T+ + +++
Sbjct: 224 EMVGYFEEDLRANAARGVVNRISDVKLLQGDLSEAWREGRVEFATVAMRFSLRDEVFERA 283
Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
N + + P+ + WTFVR W+L + + G
Sbjct: 284 TNRHVENGPQEAKEF---WTFVR---EPGGPWLLSAIQQG 317
>gi|15600721|ref|NP_254215.1| hypothetical protein PA5528 [Pseudomonas aeruginosa PAO1]
gi|107104630|ref|ZP_01368548.1| hypothetical protein PaerPA_01005709 [Pseudomonas aeruginosa PACS2]
gi|254237792|ref|ZP_04931115.1| hypothetical protein PACG_03888 [Pseudomonas aeruginosa C3719]
gi|254243078|ref|ZP_04936400.1| hypothetical protein PA2G_03868 [Pseudomonas aeruginosa 2192]
gi|9951866|gb|AAG08913.1|AE004965_5 hypothetical protein PA5528 [Pseudomonas aeruginosa PAO1]
gi|126169723|gb|EAZ55234.1| hypothetical protein PACG_03888 [Pseudomonas aeruginosa C3719]
gi|126196456|gb|EAZ60519.1| hypothetical protein PA2G_03868 [Pseudomonas aeruginosa 2192]
Length = 284
Score = 72.7 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 22/229 (9%), Positives = 71/229 (31%), Gaps = 32/229 (13%)
Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61
+F+ +L I F+ R + ++ ++++
Sbjct: 87 MFMGDGFEGIQMLDILLIALVAFIAFRFIAARRR-----------------QQNQGQPAM 129
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
G + + + +F +++ + F+ + F+ AR + ++ +
Sbjct: 130 AGHAPMQREMPAQAPIFGGAAAAAAAPSPVINAPSWFNEERFVGAAREHFMSLQQHWDAN 189
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
++ I + V ++ R +S+ + +++ + + T+
Sbjct: 190 EMDKIAEFVTPQM---LQWLKQERAEIGDAYQSTYIDNLVVQLDGVDDQADKTIATLTFS 246
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D+ + W R + P W++ +
Sbjct: 247 GVSKTSRFDQG-----------EAFSESWRMERAQGENQP-WLVAGIRQ 283
>gi|74318798|ref|YP_316538.1| hypothetical protein Tbd_2780 [Thiobacillus denitrificans ATCC
25259]
gi|74058293|gb|AAZ98733.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
25259]
Length = 273
Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 23/175 (13%), Positives = 57/175 (32%), Gaps = 15/175 (8%)
Query: 57 RGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116
R + N T FD F EA+ ++ +
Sbjct: 114 RRNAPQPAMQYAGVPPGHNPRLHDATPAGATAGPATGFPPGFDAAGFAREAKLNFIRLQA 173
Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
+F G + + ++ + + ++ R +++ V + D +++ AS E+N +
Sbjct: 174 AFDAGNLDDLRAFTSPEIFAELSMQMAER---GDVQQTTDVMMLDAEVLEASDEDNRHVV 230
Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
++R + ++ + ++W + I WV+ + G
Sbjct: 231 SVRF-----------TGQVRENEGAAPVALDEVWHLTKPIHGGGG-WVIAGIQQG 273
>gi|83311911|ref|YP_422175.1| hypothetical protein amb2812 [Magnetospirillum magneticum AMB-1]
gi|82946752|dbj|BAE51616.1| Uncharacterized protein conserved in bacteria [Magnetospirillum
magneticum AMB-1]
Length = 347
Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 23/224 (10%), Positives = 63/224 (28%), Gaps = 35/224 (15%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
+ + + ++ +L G +P + + + + +
Sbjct: 157 LQLAIIGGLA-WLAYRLF------RGRSQPAVPAGNPYMRTAPGEHVEPMIGAGPVQPRI 209
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+ + D + F + + ++ +G + +++
Sbjct: 210 EREFDA-------------------SGGDQEAFTE----ILQGVQKAWSDGNLLQLKRFA 246
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT--IRIVGQFISAS 188
V ++ +S S K V + + + E Y+T +
Sbjct: 247 TPEVVAFLSEDMSRNASEGVANKVENVTLLRGDVSESWSEGGFDYLTAILTFSCNDYMVR 306
Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
D + +P + WTFVR + W+L + + +
Sbjct: 307 LD-TGAVADGNPHATVTHTEAWTFVR--SSNGGRWLLSAVQQVQ 347
>gi|46201583|ref|ZP_00054758.2| COG4395: Uncharacterized protein conserved in bacteria
[Magnetospirillum magnetotacticum MS-1]
Length = 343
Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 24/228 (10%), Positives = 68/228 (29%), Gaps = 31/228 (13%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
+ +LL I + + +T + +
Sbjct: 145 GASFLGLLLQLAIIGGLVWLAFRLFRSRT--------------------QPAVPAGNPYM 184
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ + + + + L ++ ++ + D + F + ++ +G + ++
Sbjct: 185 RDTHGEHVEPMISGAPPLARIEKEF--DPSGNDQEAFTE----ILLGVQQAWSDGNLLSL 238
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYIT--IRIVGQF 184
++ V ++ +S S K V + + + E Y+T +
Sbjct: 239 KRFATPEVVSFLSEDMSRNASEGIANKVENVTLLKGDVSESWSEGGFDYLTAILTFSCND 298
Query: 185 ISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
D + +P + WTF+R + W+L + + +
Sbjct: 299 YMVRLD-TGAVAEGNPRATVTHTEAWTFMR--STNGGRWLLSAVQQVQ 343
>gi|219115361|ref|XP_002178476.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410211|gb|EEC50141.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 510
Score = 72.3 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/198 (12%), Positives = 78/198 (39%), Gaps = 7/198 (3%)
Query: 37 NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT 96
+K + + + D + + + S+ + + + ++++ +
Sbjct: 303 YDKSGARDAKARVDHIREDAKEAWETSQNPWVYRVSSVYDTLTAESPETRAVKELRQLDP 362
Query: 97 DFDPKDF-LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSS 155
+F +D+ + ++ I+ F EG+++ ++ + V++ ++ R+ + ++
Sbjct: 363 EFTLEDWKADVVEHTLPQIMQWFLEGRINQLKPWLGEGVFKRLAAEMTAREKEGVQIDTN 422
Query: 156 LVGIDDMKIINASIEENT---VYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWT 211
L+GI + +I+ +E I + + Q I+ K D+ ++ + +
Sbjct: 423 LLGIMNSEILAIEPDEVNRGSPIIILHFMAQQINCVKKKKDDEIVEGAEDDIRANSYVTA 482
Query: 212 FVR--NIPPSNPNWVLIS 227
F R + NW ++
Sbjct: 483 FQREYDEEKGELNWKIVD 500
>gi|256083996|ref|XP_002578220.1| mitochondrial 39S ribosomal protein L45 [Schistosoma mansoni]
gi|238663583|emb|CAZ34458.1| putative mitochondrial 39S ribosomal protein L45 [Schistosoma
mansoni]
Length = 327
Score = 71.9 bits (174), Expect = 6e-11, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 8/146 (5%)
Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE--KLVDS----RVYQDFN 139
K + + S F+ K F EA N Y D + + +LV + D
Sbjct: 126 KDLSLLKSHEPSFNSKRFTIEAENIYVEAHDLLQNYRQNESRLFELVTEKALVDMTADLK 185
Query: 140 DSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSD 199
K +V I ++++ +T+R Q I + Y++ L+ +
Sbjct: 186 LRTLQWKFVGNIEPPRVVQIRCNELLS--KGNVYAQVTVRFYTQQILSIYNRFGRLLYGN 243
Query: 200 PEIFGKVIDIWTFVRNIPPSNPNWVL 225
P+ V++ F R+I W L
Sbjct: 244 PDTAVDVLEYVVFERHISDEYGTWRL 269
>gi|217322864|ref|YP_002324754.1| hypothetical protein ABBFA_000841 [Acinetobacter baumannii
AB307-0294]
gi|213985735|gb|ACJ56034.1| hypothetical protein ABBFA_000841 [Acinetobacter baumannii
AB307-0294]
Length = 190
Score = 71.9 bits (174), Expect = 6e-11, Method: Composition-based stats.
Identities = 20/199 (10%), Positives = 54/199 (27%), Gaps = 21/199 (10%)
Query: 38 EKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDI-----V 92
+K + + + DN + + G
Sbjct: 8 QKKKLAANNPYAPNNGGQNPFGRSAAPTNTGDNTNIFGQSVGGGAATQAPFGSATTNSGN 67
Query: 93 SVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNV 152
+ +P FL AR + I + I + + +Y + + +
Sbjct: 68 QLPDGSEPASFLRVARQRFNHIQSINSASNIEEIRRYLTPELYNSMYNDIMENQDQ---- 123
Query: 153 KSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTF 212
+ + +++++ E +++R + + +IW F
Sbjct: 124 DVAEFSNLNAMVVDSATENGQYIVSVRF-----------TGTVSEDLNSLPQPFTEIWHF 172
Query: 213 VRNIPPSNPNWVLISTKLG 231
V+ + +WV+ +
Sbjct: 173 VKPVGSQQ-DWVVAGIQQA 190
>gi|316932842|ref|YP_004107824.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
palustris DX-1]
gi|315600556|gb|ADU43091.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
palustris DX-1]
Length = 358
Score = 71.9 bits (174), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/193 (13%), Positives = 59/193 (30%), Gaps = 10/193 (5%)
Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF 98
+P +G + G + G + + D
Sbjct: 173 RPDGADATGPMGRATHAMDQSAAQGTAQGTAQASQSGYRSGFGFGGGARNDRPLEIKPD- 231
Query: 99 DPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG 158
D + F + ++ + + +L + F L K+ K S V
Sbjct: 232 DYEAF----ERLLGEVQAAWSNEDIDRLRELATPEMASYFAKDLEENKAANDINKVSDVK 287
Query: 159 IDDMKIINASIEENTVYITIRIVGQFISASYDK-DNLLISSDPEIFGKVIDIWTFVRNIP 217
+ + A E T + T+ + + + ++ + L++ E + +IWTF R
Sbjct: 288 LLQGDLAEAWTEGETDFATVAMRFSLVDKTLERGTDRLVAGS-ETPIEATEIWTFTRR-- 344
Query: 218 PSNPNWVLISTKL 230
+W L + +
Sbjct: 345 -PGASWELAAIQQ 356
>gi|302880097|ref|YP_003848661.1| import inner membrane translocase subunit Tim44 [Gallionella
capsiferriformans ES-2]
gi|302582886|gb|ADL56897.1| import inner membrane translocase subunit Tim44 [Gallionella
capsiferriformans ES-2]
Length = 281
Score = 71.9 bits (174), Expect = 7e-11, Method: Composition-based stats.
Identities = 25/217 (11%), Positives = 63/217 (29%), Gaps = 34/217 (15%)
Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73
+L A + + + KK ++P + E
Sbjct: 95 ILMALLAGAAVMFAIAMFRKK---QQPAMQSMQYAGAGAPYQEPVQPHYAGSSSAAIASP 151
Query: 74 INELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSR 133
P + FL A+ S+ + + ++ I +
Sbjct: 152 ATGHIPADFP----------------VESFLRSAKTSFIRLQAANDRKDLNDIREYTTPE 195
Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
++ + + + R + +++ V + +++ + E + ++R GQ
Sbjct: 196 MFAEISMQMHERDN---TPQTTNVIAINGELLEVANEGDWAIASVRFTGQL--------- 243
Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
S + V +IW +N+ W+L +
Sbjct: 244 ---SENNGTAENVDEIWHVQKNLKDDKAVWLLSGIQQ 277
>gi|170743208|ref|YP_001771863.1| import inner membrane translocase subunit Tim44 [Methylobacterium
sp. 4-46]
gi|168197482|gb|ACA19429.1| import inner membrane translocase subunit Tim44 [Methylobacterium
sp. 4-46]
Length = 316
Score = 71.9 bits (174), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/180 (15%), Positives = 54/180 (30%), Gaps = 11/180 (6%)
Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT-DFDPKDFLNEARNSYE 112
R + + G + P DF S
Sbjct: 143 RRRQAEPAMAGGYARSGPPPGPNPMTGLGGGGARPAGPPQRDQVGISPADF-EAFERSLT 201
Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
I ++ V + +L + F + L + + + V + + A E
Sbjct: 202 QIQLAYGAEDVGTLRRLATPEMAGYFTEELQANAARGVINRIADVKLLQGDLSEAWREGP 261
Query: 173 TVYITIRIVGQFISASYDK-DNLLIS-SDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
T Y T+ + + ++ +++ DPE +IWTF R+ W+L + +
Sbjct: 262 TDYATVAMRYALRDVTVERGSGRVVANGDPEAV----EIWTFRRDRGGP---WLLSAIQQ 314
>gi|299131769|ref|ZP_07024964.1| import inner membrane translocase subunit Tim44 [Afipia sp. 1NLS2]
gi|298591906|gb|EFI52106.1| import inner membrane translocase subunit Tim44 [Afipia sp. 1NLS2]
Length = 315
Score = 71.9 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 48/124 (38%), Gaps = 5/124 (4%)
Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA 167
+ +++ ++ + + + + L++ S K + V + + A
Sbjct: 194 ERRLNEVQEAWSNEDMNRLHAIATPEMVSYMSQDLASNSSRGVINKVTNVKLLQGDLAEA 253
Query: 168 SIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226
E +T Y T+ + + + ++ +I + +V +IWTFVR +W L
Sbjct: 254 WREGSTDYATVAMHFSLVDKTMERSSGRMIEGS-DTPQEVTEIWTFVRR---PGADWELS 309
Query: 227 STKL 230
+ +
Sbjct: 310 AIQQ 313
>gi|325191254|emb|CCA26040.1| Mitochondrial Protein Translocase (MPT) Family puta [Albugo
laibachii Nc14]
Length = 409
Score = 71.5 bits (173), Expect = 8e-11, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 64/152 (42%), Gaps = 4/152 (2%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNE-ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138
T + +R+I +F + + + A ++D+F +G+ ++K Y
Sbjct: 248 GETSMGIAIREIRRAEPEFILEQWKEDIAEFVLPGVLDAFLKGRSRDLKKWFGEAAYNRI 307
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT-VYITIRIVGQFISASYDKDNLLIS 197
N ++ RKS + +++ ID++ +I AS E+ I +R Q I+ +++ ++
Sbjct: 308 NIAIRERKSEGLVMDPNVLEIDNVDVIEASAEDKQAPIILVRFRSQQINCIRNREGEIVE 367
Query: 198 SDPEIFGKVIDIWTFVR--NIPPSNPNWVLIS 227
+ I+ F R + W ++
Sbjct: 368 GAEDEVLAYYYIFAFQREYDESTERLRWRIVD 399
>gi|116053679|ref|YP_794006.1| hypothetical protein PA14_72930 [Pseudomonas aeruginosa UCBPP-PA14]
gi|296392393|ref|ZP_06881868.1| hypothetical protein PaerPAb_29757 [Pseudomonas aeruginosa PAb1]
gi|115588900|gb|ABJ14915.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
Length = 285
Score = 71.5 bits (173), Expect = 8e-11, Method: Composition-based stats.
Identities = 20/229 (8%), Positives = 67/229 (29%), Gaps = 31/229 (13%)
Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61
+F+ +L I F+ R + ++ + + +
Sbjct: 87 MFMGDGFEGIQMLDILLIALVAFIAFRFIAARRR----------------QQNQGQPAMA 130
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
+++ +++ + F+ + F+ AR + ++ +
Sbjct: 131 GHAPMQREMPAQAPIFGGATAAAAVAPSPVINAPSWFNEERFVGAAREHFMSLQQHWDAN 190
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
++ I + V ++ R +S+ + +++ + + T+
Sbjct: 191 EMDKIAEFVTPQM---LQWLKQERAEIGDAYQSTYIDNLVVQLDGVDDQADKTIATLTFS 247
Query: 182 GQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D+ + W R + P W++ +
Sbjct: 248 GVSKTSRFDQG-----------EAFSESWRMERAQGENQP-WLVAGIRQ 284
>gi|78706782|ref|NP_001027194.1| CG11779, isoform C [Drosophila melanogaster]
gi|16183135|gb|AAL13638.1| GH18370p [Drosophila melanogaster]
gi|71854565|gb|AAZ52531.1| CG11779, isoform C [Drosophila melanogaster]
Length = 430
Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 57/152 (37%), Gaps = 1/152 (0%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ + D + + T L++ M ++V + FD KDFL +
Sbjct: 274 ESENPVIRASRLLTDKVSDVMGGLFSKTELSETMTELVKIDPSFDQKDFLRDCETDIIPN 333
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I++S G + ++ + + + K + S ++ I+++++ + E
Sbjct: 334 ILESIVRGDLEILKDWCFESTFNIIANPIKEAKKAGVYLDSKILDIENIELAMGKVMEQG 393
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
+ I Q I D+ + ++ DPE
Sbjct: 394 PVLIITFQAQQIMCVRDQKSQVVEGDPEKPKP 425
>gi|298715200|emb|CBJ27872.1| Import inner membrane translocase subunit TIM44, mitochondrial
precursor [Ectocarpus siliculosus]
Length = 602
Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 53/153 (34%), Gaps = 5/153 (3%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138
+ +R++ + F +D+ + + + + +F G V +++ Y
Sbjct: 440 AESDEGIGVRELRRLDPSFSVEDWKRDIQELFLPEFMSAFLRGDVKLLKQWTGEACYNKL 499
Query: 139 NDSLSTRKSNEKNVKSSLVGID--DMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196
RK++ + ++ I ++ I A + I ++ + Q I+ +K ++
Sbjct: 500 ASEAKQRKADGMVLDPHVLDIRQGEVLAIKADAGKANPTIALQFMCQQINCVRNKKGEIL 559
Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ I F R W ++
Sbjct: 560 EGAEDDIRATYYILAFQREFNDDEAELRWRVVD 592
>gi|89897269|ref|YP_520756.1| hypothetical protein DSY4523 [Desulfitobacterium hafniense Y51]
gi|89336717|dbj|BAE86312.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 315
Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 74/224 (33%), Gaps = 11/224 (4%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
I L I ++ G ++T + D GK N
Sbjct: 88 ISIALILGI-VYLIYIAWGS-SRRTW---KNQRSKGHSNYNNHNDSSPHPIDVTGKPITN 142
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+++ + MR ++ +D + + R + I D++ + E +
Sbjct: 143 AENLRRFNNAIQYTRENMRYYAESFSRWDRQFLIERVRQVFFWIQDAWTRQDLTGGENYI 202
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSS--LVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
S V Q ++ L S + ++ +D++ I++ + E++ Y + + I +
Sbjct: 203 VSSVLQKYSLDLENMNSRGERNVIKEPVLHAEDIEFIHSYLGESSQYFVVMLRASMIDYT 262
Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
D +I+ + + + W F WVL +
Sbjct: 263 VDTSGKIIAGEDDNRLYFTEFWRF----TWQGDQWVLSEIYQED 302
>gi|119897609|ref|YP_932822.1| hypothetical protein azo1318 [Azoarcus sp. BH72]
gi|119670022|emb|CAL93935.1| conserved hypothetical membrane protein [Azoarcus sp. BH72]
Length = 304
Score = 70.7 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/203 (9%), Positives = 67/203 (33%), Gaps = 25/203 (12%)
Query: 30 VLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMR 89
++ ++ + ++G + + + + + P
Sbjct: 127 IMRRRAAAQHQGGMQYAGASHGAPSARSYDVAMPQSAGNTPAPAAAVAEPAAG------- 179
Query: 90 DIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNE 149
++ DFD + F+ +A+ ++ + S G + + + ++ + ++ R
Sbjct: 180 ---NIPADFDVQGFVRQAKVNFIRLQASHDAGNLDDLREFTTPEMFAELKTNILAR---G 233
Query: 150 KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDI 209
++ + + V D +++ E + +++ LL ++ ++
Sbjct: 234 QSAQQTDVLEIDAEVVEVVEEGSRYIVSVLFR-----------GLLREDRDAAPEQIHEV 282
Query: 210 WTFVRNIPPSNPNWVLISTKLGE 232
W V+ + W L + +
Sbjct: 283 WHLVKP-RDGSAGWKLAGIQQAQ 304
>gi|290983241|ref|XP_002674337.1| predicted protein [Naegleria gruberi]
gi|284087927|gb|EFC41593.1| predicted protein [Naegleria gruberi]
Length = 520
Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 57/175 (32%), Gaps = 2/175 (1%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN-SYEA 113
D R K K++++ + M FD L
Sbjct: 334 DARTAQEKVKKSKEEDIPDTEADISSTSENALAMGAFKKRDPRFDLDLLLVTMETLIIPE 393
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQD-FNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
I+ ++F H I+K V Y+ F + R + + ++ ++D+ + +
Sbjct: 394 IMSAYFNDDAHTIKKFVSESCYRQVFFPRIQERVHTKIKYDAKILHVEDVMLYTTRYDAG 453
Query: 173 TVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
+ I Q+I ++ ++ P+ K +W ++ +W +
Sbjct: 454 NPALVISCAVQYIHCMKNEAGEIVEGGPKDIRKENQMWILKQDESQETDDWYVSE 508
>gi|194217042|ref|XP_001501754.2| PREDICTED: similar to Mitochondrial ribosomal protein L45 [Equus
caballus]
Length = 304
Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 50/171 (29%), Gaps = 4/171 (2%)
Query: 56 ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115
K+ L E +R I +F KDF +A+N +
Sbjct: 90 PPEGDARVSSLSKEGLARRAERLKKNVASQLSIRRIRECDANFKIKDFPEKAKNIFIEAH 149
Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENT 173
+ L D L + V+S + +
Sbjct: 150 LCLNNSDSDQLHTL--GNXIPDMVWDLKYKTVRWSFVESLEPPLVVQVRCSNLLNQGNMY 207
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
IT+R+ + A YD+ L+ ++ V++ F +++ +W
Sbjct: 208 GQITVRMHTRQTLAIYDRFGRLMYGQEDVPKDVLEYVVFEKHLVNPYGSWR 258
>gi|220925671|ref|YP_002500973.1| import inner membrane translocase subunit Tim44 [Methylobacterium
nodulans ORS 2060]
gi|219950278|gb|ACL60670.1| import inner membrane translocase subunit Tim44 [Methylobacterium
nodulans ORS 2060]
Length = 318
Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/220 (15%), Positives = 73/220 (33%), Gaps = 28/220 (12%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
+L A + V L +R ++ E +G ++ S + LG G L
Sbjct: 123 LLQVALLVGLVMLAVRFF--RRRQPEPAMAGGYARSGPGSGPGMGPLGGLGGGGGPRPLP 180
Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
+ + +G D F + + ++ V + +L
Sbjct: 181 NPAQRDQVGIGPA-------------DYDAF----ERTLTQVQLAYGAEDVATLRRLATP 223
Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK- 191
+ F + L + + S V + + A E T Y T+ + + ++
Sbjct: 224 EMVGYFTEELQANAARGVINRISDVKLQQGDLSEAWREGPTDYATVAMRYTLRDVTVERG 283
Query: 192 DNLLI-SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++ + DPE ++WTF R+ W+L + +
Sbjct: 284 SGRVVGTGDPEAV----EVWTFRRDRGGP---WLLSAIQQ 316
>gi|260361390|ref|ZP_05774455.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
gi|308111106|gb|EFO48646.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
Length = 229
Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 8/126 (6%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +RG+LG K G+ + SK ++ + +
Sbjct: 90 GIQFMDILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNASKFEQPNMQNFEQQP 149
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ T + FD F+N +R Y + ++ ++ I
Sbjct: 150 NTN--------AGGFTGFGAQTDVPHNYPPGFDQAAFINGSREHYRILQGAWNHNQLDTI 201
Query: 127 EKLVDS 132
E+ V
Sbjct: 202 EEYVSP 207
>gi|195572942|ref|XP_002104454.1| GD20969 [Drosophila simulans]
gi|194200381|gb|EDX13957.1| GD20969 [Drosophila simulans]
Length = 335
Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/208 (16%), Positives = 60/208 (28%), Gaps = 6/208 (2%)
Query: 24 FLQLRGVLGKKTG----NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFP 79
F +LR K EKP K + +
Sbjct: 59 FKRLRKFKFVKMDLPNLREKPEDITKEEMRSRMKERGVLPPRPWMERPFHISCTGGIFEA 118
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
+ I+S +FL + S A + I + V R Y +
Sbjct: 119 YVPPEGDGKKSIISTSGAKQKFEFLEKKSKSLMAAHTHMAAKDKYKIREFVSERCYPEMM 178
Query: 140 DSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLIS 197
++ + K ++S + + E +T+R Q + A YD+ L+
Sbjct: 179 HNVKDKTIRWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLMH 238
Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
I V++ F ++I W L
Sbjct: 239 GSEIITKDVLEYVVFEKHISNEYGKWRL 266
>gi|239905745|ref|YP_002952484.1| hypothetical protein DMR_11070 [Desulfovibrio magneticus RS-1]
gi|239795609|dbj|BAH74598.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 315
Score = 70.0 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/205 (13%), Positives = 58/205 (28%), Gaps = 24/205 (11%)
Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87
R + ++T + S + + G + + P G L
Sbjct: 134 RFMRSRRTATAQGPSFGQPMSRSYEAEPQSQAQQAAAGGWNNLGAAAQATAPAGPDL--- 190
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
FD DFL A+ + + S+ + + IE F + + +
Sbjct: 191 -------PPGFDAADFLAGAKALFARMQQSWSKRDLADIEAFATPA----FMADVRKQAA 239
Query: 148 NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
+ + V + D K++ + + + PE V
Sbjct: 240 EDPTPAPTDVLLVDAKLLEVRSQGGATIASAYFDVLMREDPK-------AGQPEQ---VR 289
Query: 208 DIWTFVRNIPPSNPNWVLISTKLGE 232
++W F R W L + + +
Sbjct: 290 EVWHFTRKETVPGDAWKLDAIQQLD 314
>gi|218672995|ref|ZP_03522664.1| putative transmembrane TIM family protein [Rhizobium etli GR56]
Length = 113
Score = 69.6 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 4/112 (3%)
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
+ +L + L +N + S V + I A E+ Y T+ +
Sbjct: 1 DYGTLRRLTTPEAMSYLAEELGENATNGVRNRVSDVKLLQGDIAEAWREDGQEYATLAMR 60
Query: 182 GQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
I A ++D ++S D + ++WTFVR W L + + E
Sbjct: 61 YSSIDAMVERDSGRVVSGDDRQPSESTEVWTFVRKSGAD---WKLAAIQGTE 109
>gi|296446386|ref|ZP_06888331.1| import inner membrane translocase subunit Tim44 [Methylosinus
trichosporium OB3b]
gi|296256159|gb|EFH03241.1| import inner membrane translocase subunit Tim44 [Methylosinus
trichosporium OB3b]
Length = 325
Score = 69.6 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/224 (12%), Positives = 60/224 (26%), Gaps = 24/224 (10%)
Query: 8 SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
+ +LL + FF+ +L +F+G+ + G G
Sbjct: 123 ASMIGLLLQLALIFFLA-RL-------------AFQWFAGRKLAGAFGGTGGAGPRPGGP 168
Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
T + D F +++ V ++
Sbjct: 169 GFGFMGFPGGGGAQTPERSAPISLSQA----DFPAF----ERLLGETQEAYSREDVARLD 220
Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS- 186
L + F + L + + S V + + A E Y T+ + +
Sbjct: 221 ALTTPEMASYFAEDLKSNAREGVVNRISGVKLLQGDLAEAWREGGDEYATVAMRFSLVDQ 280
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++ D + ++WTF R W L + +
Sbjct: 281 FVERATGRVVRGDA-TPTQSTEVWTFRRPAGRGPEAWRLSAIQQ 323
>gi|146280567|ref|YP_001170720.1| hypothetical protein PST_0171 [Pseudomonas stutzeri A1501]
gi|145568772|gb|ABP77878.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
gi|327478845|gb|AEA82155.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
Length = 280
Score = 69.2 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/232 (11%), Positives = 69/232 (29%), Gaps = 40/232 (17%)
Query: 2 VFIKMDS---GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58
+F+ IL+F I F +F L + ++P + +
Sbjct: 84 MFMGDGFEGIQFMDILIFGLIAFLLF----RFLAARRRQQQPAMAGHAPMQREMPQQPAT 139
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
G+ +++ F+ ++F+ AR + ++ +
Sbjct: 140 ------------------SIFGGSAAPVAAAPVINAPAWFNEQNFVAAAREHFLSLQQHW 181
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
++ I + V ++ R +S+ + +++ T+
Sbjct: 182 DANEMDKIAEFVTPQLLGFLKQ---ERAEIGDAYQSTYIDDLQIQLDGVDDNAEKTTATL 238
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D+ +P + W R + P W++ +
Sbjct: 239 TFSGVAKTSRFDQ------GEP-----FSESWRMERVQGENQP-WLVAGIRQ 278
>gi|144897341|emb|CAM74205.1| Mitochondrial import inner membrane translocase, subunit Tim44
[Magnetospirillum gryphiswaldense MSR-1]
Length = 327
Score = 69.2 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 54/173 (31%), Gaps = 9/173 (5%)
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVY-TDFDPKDFLNEARNSYEAIVDSF 118
T G E P T R +D D F E + ++
Sbjct: 161 RTQTAGADMGAPAYQREAMPGATGNGDSNRVAKEFEVSDDDQNQF----SRIIEGVQKAW 216
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
+G A+ +LV V + L+ ++N V + I E Y T
Sbjct: 217 SDGNPVALRQLVTPEVAGWIGEDLARDQANGVRNVVEDVTLLKGDISETWSENGMDYATA 276
Query: 179 RIVGQFISA-SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
I DN ++ DP + + WTFVR + WVL + +
Sbjct: 277 IITFSARDYMVRLSDNEVVEGDPRNAVETTEAWTFVR---GAGGTWVLSAIEQ 326
>gi|332029058|gb|EGI69072.1| Putative 39S ribosomal protein L45, mitochondrial [Acromyrmex
echinatior]
Length = 337
Score = 69.2 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/199 (18%), Positives = 65/199 (32%), Gaps = 3/199 (1%)
Query: 29 GVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVM 88
G L +K E+P + S G K+ F ++ +
Sbjct: 86 GFLPQKPWKERPAFISSTSSIFESYVAPEGDGKYSVITKEGAKQKFT-FFEKKSKSFMAI 144
Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148
R I S F FL EA + Y+ ++ I K V Y + + +
Sbjct: 145 RKIKSFDDSFKTSFFLEEALDIYQKAYEALASKNEEEIIKYVTEMAYPKITHNTMNKTIH 204
Query: 149 EKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
K ++S + + E +T+R Q + A YD+ LI + V
Sbjct: 205 WKFLESLEPARLVHARTTDVITKENVFAQLTVRFHTQQVLAIYDRFGHLIQGSEILRKDV 264
Query: 207 IDIWTFVRNIPPSNPNWVL 225
++ F +++ W +
Sbjct: 265 LEYIVFEKHLANEYGIWRI 283
>gi|156086672|ref|XP_001610745.1| mitochondrial inner membrane translocase subunit TIM44 [Babesia
bovis T2Bo]
gi|154797998|gb|EDO07177.1| mitochondrial inner membrane translocase subunit TIM44, putative
[Babesia bovis]
Length = 395
Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 59/146 (40%), Gaps = 2/146 (1%)
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLV 130
+ + + + L K ++++ + + FD +F+ + IV + +G ++E
Sbjct: 224 NPVFDQLFGNSTLAKAVKEMKRLDSSFDLPEFIESVEHVVAPHIVQCYLDGDSKSLEAHC 283
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYITIRIVGQFISASY 189
+ N S+ R + + +++ + D+++ +EE + Q I+
Sbjct: 284 GELAFNVLNASIRERDLQKLYLDPNILILKDVELKGGMTMEEGYPWFIFNFKTQQINCLR 343
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRN 215
D +++ + + +V+ R+
Sbjct: 344 DSRGHVVAGEIDDIRQVVYSMAVSRH 369
>gi|302036897|ref|YP_003797219.1| hypothetical protein NIDE1559 [Candidatus Nitrospira defluvii]
gi|300604961|emb|CBK41294.1| conserved exported protein of unknown function [Candidatus
Nitrospira defluvii]
Length = 343
Score = 69.2 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 56/149 (37%), Gaps = 13/149 (8%)
Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148
I S T D F + S I ++ + + A+ +LV + + F+ L+ S
Sbjct: 201 ATIDSEITSADKAAF----QQSLTDIQTAWGQQDLSALRRLVTPEMLEYFSTGLAELTSQ 256
Query: 149 EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY------DKDNLLISSDPEI 202
++ + V + ++ + +E Y T+ + + LI E
Sbjct: 257 DQANRVEDVVLLQAEVRESWVENTVQYATVSLHWSARDYTVSLSKAPGDAGYLIEGSAEK 316
Query: 203 FGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ ++WTF+R + W+L + +
Sbjct: 317 PIETTEVWTFMRY---QHGKWLLSAIQQV 342
>gi|254230446|ref|ZP_04923825.1| conserved hypothetical protein [Vibrio sp. Ex25]
gi|151937047|gb|EDN55926.1| conserved hypothetical protein [Vibrio sp. Ex25]
Length = 209
Score = 68.8 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 8/128 (6%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +RG+LG K G+ + SK ++ + +
Sbjct: 90 GIQFMDILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNFEQQP 149
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+N + FD F+N +R Y + ++ ++ I
Sbjct: 150 NTNNGGFGGFGAQTDVP--------HNYPPGFDQAAFINGSREHYRILQGAWNHNQLKTI 201
Query: 127 EKLVDSRV 134
E+ V +
Sbjct: 202 EEYVSPSL 209
>gi|307214389|gb|EFN89460.1| Probable 39S ribosomal protein L45, mitochondrial [Harpegnathos
saltator]
Length = 334
Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats.
Identities = 33/200 (16%), Positives = 67/200 (33%), Gaps = 4/200 (2%)
Query: 29 GVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVM 88
G + +K +E+P + S G K+ ++ +
Sbjct: 82 GFVPQKQWSERPAYMSCTPIIFESYIAPEGDGKY-SAITKEGAKQKYSFLKKKSKSLLAI 140
Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK-VHAIEKLVDSRVYQDFNDSLSTRKS 147
R I S F F+ EA + Y+ ++ + + + V Y ++ +
Sbjct: 141 RKIKSFDDMFKTSHFIEEAIDIYKKAYEALAAKEGEEKLLQYVTETAYPKMIHNMMDKTI 200
Query: 148 NEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
+ K ++S + + E IT+R Q I A YD+ LI +
Sbjct: 201 HWKFLESLEPARVVHMRTTDVITKENVFAQITVRFHTQQILAIYDRFGRLIQGSEILRKD 260
Query: 206 VIDIWTFVRNIPPSNPNWVL 225
V++ F +++ W +
Sbjct: 261 VLEYIVFEKHLANEYGIWRI 280
>gi|260829205|ref|XP_002609552.1| hypothetical protein BRAFLDRAFT_285685 [Branchiostoma floridae]
gi|229294914|gb|EEN65562.1| hypothetical protein BRAFLDRAFT_285685 [Branchiostoma floridae]
Length = 349
Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 47/142 (33%), Gaps = 5/142 (3%)
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE---GKVHAIEKLVDSRVYQDFNDSLST 144
+R I +F K F A+ Y+ + H + +LV + Y D
Sbjct: 127 IRKIKEFDKEFSTKTFAGTAQEIYKEANNCLANFNTRNRHRLHQLVTEKCYPDMVRGFKF 186
Query: 145 RKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEI 202
R +S + S +T+R+ + A YD+ L D +
Sbjct: 187 RTIRWTFQESVEPPKVVHVRHNDLISKGNVYGQVTVRMHTRQTLAIYDRFGRLEFGDENL 246
Query: 203 FGKVIDIWTFVRNIPPSNPNWV 224
V++ F R++ +W
Sbjct: 247 VKDVLEYVVFERHLVNPYSSWR 268
>gi|253997457|ref|YP_003049521.1| import inner membrane translocase subunit Tim44 [Methylotenera
mobilis JLW8]
gi|253984136|gb|ACT48994.1| import inner membrane translocase subunit Tim44 [Methylotenera
mobilis JLW8]
Length = 270
Score = 68.4 bits (165), Expect = 7e-10, Method: Composition-based stats.
Identities = 20/174 (11%), Positives = 55/174 (31%), Gaps = 15/174 (8%)
Query: 57 RGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVD 116
R R + DF FL A+ S+ +
Sbjct: 110 RKPQQPNMQYAGAGNAYQTPSTEPVLSSGNATRSSQPIPNDFPVDSFLRNAKASFIRLQA 169
Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
+ ++ + + V+ + + + R +V+++ V + +++ + E+
Sbjct: 170 ANDRKDINDVREYTTPEVFAEISMQMQER---GSSVQTTEVVAINAELLEVANEDAYTIA 226
Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++R GQ + + L + ++W ++ + W+L +
Sbjct: 227 SVRFTGQL----RENNGAL--------ESIDEVWHIQKDTTNTQEKWLLAGIQQ 268
>gi|224123246|ref|XP_002319031.1| predicted protein [Populus trichocarpa]
gi|222857407|gb|EEE94954.1| predicted protein [Populus trichocarpa]
Length = 233
Score = 68.4 bits (165), Expect = 7e-10, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 54/159 (33%), Gaps = 14/159 (8%)
Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
L + T + F EA Y+ I G A+ K V ++Y + + +
Sbjct: 71 ELKNAYAIVKLRKTGYSKHKFYVEAIKLYKEINTLLANGDKTALRKAVTEKMYSELKNEI 130
Query: 143 STRKSNEK----NVKSSLVGI----------DDMKIINASIEENTVYITIRIVGQFISAS 188
R+S + + ++ + + + + + +T+ I + +
Sbjct: 131 KQRQSAWNMSKLYWEMIEPAVLIRTLRARLATEIGVDKSDLNKVFIQLTLEIKTKQKFEA 190
Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
YD ++ D V +IW F +++ W L
Sbjct: 191 YDSKGARVAGDKNKEILVREIWVFEKSLFHPGAYWRLCG 229
>gi|148907785|gb|ABR17018.1| unknown [Picea sitchensis]
Length = 190
Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 11/139 (7%)
Query: 98 FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157
+ F EA Y+ I +G ++ +LV +Y F + R++ V ++
Sbjct: 50 YSKPKFYEEAIQLYKEINSHLAQGDRTSLRQLVTENMYTIFKREIKQRETTWSRVHWEMI 109
Query: 158 GI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208
+ + +++ V IT+ I+ A+YD +LI+ + V D
Sbjct: 110 EPTVRIRTLRARMIAVDKNNLDNAFVQITLEILTNQKFAAYDLKGILIT--EDSKVLVED 167
Query: 209 IWTFVRNIPPSNPNWVLIS 227
IW F R++ W L
Sbjct: 168 IWVFERSLFQPGARWRLCG 186
>gi|319761670|ref|YP_004125607.1| import inner membrane translocase subunit tim44 [Alicycliphilus
denitrificans BC]
gi|330823541|ref|YP_004386844.1| import inner membrane translocase subunit Tim44 [Alicycliphilus
denitrificans K601]
gi|317116231|gb|ADU98719.1| import inner membrane translocase subunit Tim44 [Alicycliphilus
denitrificans BC]
gi|329308913|gb|AEB83328.1| import inner membrane translocase subunit Tim44 [Alicycliphilus
denitrificans K601]
Length = 332
Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats.
Identities = 17/226 (7%), Positives = 65/226 (28%), Gaps = 23/226 (10%)
Query: 18 FITFFVFLQLRGVLGKKTG-----NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
+ + ++ R + G + + + + + + ++
Sbjct: 119 MVVIGMVMRSRRPAASQEGAAPFAFQGAGAATPAEAQAPRQYSPDKVGNDASARPWESTG 178
Query: 73 SINELFPIGTRL----NKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
+ G V DFD FL A+ ++ + ++ + +
Sbjct: 179 MAYQAPATGGGSMIGSALAGSQNWGVPADFDVAGFLAAAKRNFTTLQAAWDRSDIATLRS 238
Query: 129 LVDSRVYQDFNDSLSTRKSN--EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
++ + + LS R+S+ + + V + + +++ + ++
Sbjct: 239 MMTDGMVDEIRAQLSERESHRGGEQPNHTDVVMLEAQLLGIEDLGDGYMASVEF------ 292
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
++ ++W + + W++ + +
Sbjct: 293 -----SGMIREEPSAGPSPFREVWNMTKP-KNGSVGWLVAGVQALQ 332
>gi|152986284|ref|YP_001351640.1| hypothetical protein PSPA7_6329 [Pseudomonas aeruginosa PA7]
gi|150961442|gb|ABR83467.1| hypothetical protein PSPA7_6329 [Pseudomonas aeruginosa PA7]
Length = 281
Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats.
Identities = 24/232 (10%), Positives = 69/232 (29%), Gaps = 41/232 (17%)
Query: 2 VFIKMDS---GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58
+F+ ILL A + F+ + + ++R ++
Sbjct: 87 MFMGDGFEGIQMLDILLIALVA-FIAFRF----------------------IAARRRQQA 123
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ PI +++ + F+ + F+ AR + ++ +
Sbjct: 124 QAQPAMAGHAPMQREMPAQAPIFGGAAAAPSPVINAPSWFNEERFVGAAREHFMSLQQHW 183
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
++ I + V ++ R +S+ + +++ + + T+
Sbjct: 184 DANEMDKIAEFVTPQM---LQWLKQERAEIGDAYQSTYIDNLAVQLDGVDDQADKTIATL 240
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D+ + W R + P W++ +
Sbjct: 241 TFSGVSKTSRFDQG-----------EAFSESWRMERAQGENQP-WLVAGIRQ 280
>gi|330505764|ref|YP_004382633.1| import inner membrane translocase subunit Tim44 [Pseudomonas
mendocina NK-01]
gi|328920050|gb|AEB60881.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
mendocina NK-01]
Length = 284
Score = 68.0 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 25/232 (10%), Positives = 68/232 (29%), Gaps = 36/232 (15%)
Query: 2 VFIKMDS---GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58
+F+ +L+F I F +F L + ++P + +R+
Sbjct: 85 MFMGDGFEGLQIMDMLIFGLIAFLLF----RFLAARRARQQP---QMAAAGAPYQREMPN 137
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ P +++ F+ + F+ R + + +
Sbjct: 138 ADNAPAAGSNIFGGRLASAAP-----------VINAPAWFNEQSFIAAGREHFMNLQQHW 186
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
++ I + V ++ R +S+ + +++ T+
Sbjct: 187 DADEMDKIAEFVTPQLLDFLK---RERAELGDGFQSTYIDDLQVQLDGVDDNAEKTIATL 243
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D+ +P + W R + P W++ +
Sbjct: 244 TFSGVSKTSRFDQ------GEP-----FSESWRLERAQGDNQP-WLIAGIRQ 283
>gi|160900892|ref|YP_001566474.1| import inner membrane translocase subunit Tim44 [Delftia
acidovorans SPH-1]
gi|160366476|gb|ABX38089.1| import inner membrane translocase subunit Tim44 [Delftia
acidovorans SPH-1]
Length = 338
Score = 68.0 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 16/199 (8%), Positives = 56/199 (28%), Gaps = 13/199 (6%)
Query: 35 TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSV 94
GN ++ + ++ ++ + V
Sbjct: 152 AGNMGGNVDSAPLARQYNPEKVGNDASARPWEQNHQPAALASGSGVQIGSALAGSQNWGV 211
Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK-SNEKNVK 153
FD + FL A+ ++ + ++ + ++ ++ + + LS R+
Sbjct: 212 PEGFDTEGFLTAAKRNFVTLQSAWDRSDIASLRAMMTDEMLTEIRGQLSEREVQRPGQPN 271
Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213
+ V + D +++ N ++ ++ ++W
Sbjct: 272 QTDVVMIDAQLLGIEDLGNDYMASVEF-----------SGMIREDASAGPTPFREVWNMT 320
Query: 214 RNIPPSNPNWVLISTKLGE 232
+ + W++ + +
Sbjct: 321 KP-KSGSSGWLVAGVQALQ 338
>gi|320164944|gb|EFW41843.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 499
Score = 68.0 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 18/149 (12%), Positives = 63/149 (42%), Gaps = 3/149 (2%)
Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
+ + V+ +I V +F+ +F + + ++++ F+ + A+E+ ++ +
Sbjct: 341 SEIGMVIGEINRVDPNFNVDEFTIDCEKQIIPILMEAVFKSDLKALEQWCHEVCFRRLLE 400
Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
+ +R++ ++ ++ ++ +++ A + E + Q+ + + +I DP
Sbjct: 401 PIKSRRALGVQLEHKVMELNGVELRTAQLMEQGPTLVFIFNMQYTRVLRNSSSEIIEGDP 460
Query: 201 EIFGKVIDIWTFVRNIPPSN--PNWVLIS 227
+ R++ + +W +I
Sbjct: 461 DQILAATYAMALTRDLNVYDTHASWRVID 489
>gi|154247196|ref|YP_001418154.1| import inner membrane translocase subunit Tim44 [Xanthobacter
autotrophicus Py2]
gi|154161281|gb|ABS68497.1| import inner membrane translocase subunit Tim44 [Xanthobacter
autotrophicus Py2]
Length = 325
Score = 68.0 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 49/170 (28%), Gaps = 12/170 (7%)
Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
P G+ ++D + V D F I + +
Sbjct: 162 ARGDWRAASAPPAGSGRPPGVQDEIGVTP-ADLDAF----ERLLGIIQGAVSREDQAELR 216
Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
++ D L + S V + + A E N Y T+ +
Sbjct: 217 ANTTPEMFGYLADELRENAERGLRNQVSDVKLLQGDVAEAWREGNREYATVAMRYASRDV 276
Query: 188 SYDK-DNLLISSDPEIFGKVIDIWTFVRN-----IPPSNPNWVLISTKLG 231
D+ ++S G+ ++WTFVR+ + W L + +
Sbjct: 277 MLDRASGKVVSG-AAGIGESTEVWTFVRDRIAGPTGGAAGLWRLSAIQGA 325
>gi|209880173|ref|XP_002141526.1| Tim44-like domain-containing protein [Cryptosporidium muris RN66]
gi|209557132|gb|EEA07177.1| Tim44-like domain-containing protein [Cryptosporidium muris RN66]
Length = 452
Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 14/160 (8%)
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN-SYEAIVDSFFEGKVHAIEKLV 130
+ I E T ++++ V F+ +F+ I+D++ G +
Sbjct: 269 NPIIEKLFGETEFALAIKEMRKVDPTFNTVEFIETVETVIIPHIIDAYLVGNDDVLRLHC 328
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA-------------SIEENTVYIT 177
Y + S R+S + + +L+ I ++ + A + + +
Sbjct: 329 GITAYAALSASCKERRSMKLKLDPTLLLIRNVDLKGAKRWNVNSNDSNEYNNFNSYPWFI 388
Query: 178 IRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIP 217
Q I+ D + ++S + +V+ R+
Sbjct: 389 FTFSTQQINCLRDYEGKVVSGSVDDIREVVYSMAITRHPN 428
>gi|91786763|ref|YP_547715.1| import inner membrane translocase subunit Tim44 [Polaromonas sp.
JS666]
gi|91695988|gb|ABE42817.1| import inner membrane translocase, subunit Tim44 [Polaromonas sp.
JS666]
Length = 333
Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/248 (9%), Positives = 71/248 (28%), Gaps = 32/248 (12%)
Query: 5 KMDSGDFLILLFAFIT-------FFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDER 57
+ +++FA + F+ +L+G F G +
Sbjct: 98 GLGEAFGQVIMFALLALVIMVAVGFIMRKLKGGGAGAAAPRTQEPFAFQGAGNAATPRNY 157
Query: 58 GIITLGKGKKKDNLDSINELFPIGTRLNKVMR------------DIVSVYTDFDPKDFLN 105
+G + F V FD + FL
Sbjct: 158 SPENVGNDASARPWERSGMAFDANRDAGATPATGSMIGSALLGTQTWGVPAGFDAEGFLK 217
Query: 106 EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN-EKNVKSSLVGIDDMKI 164
++ ++ + D++ + ++ ++ + + L+ R+S+ V + V + + ++
Sbjct: 218 ASKANFVTLQDAWDRSDIQSLRAMMTDDMLEQIKAQLADRESHTGGVVNRTEVVMLNAQL 277
Query: 165 INASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
+ +T ++ ++ ++W + + W+
Sbjct: 278 LGIEELSDTYMASVEF-----------SGMIREDASAGASPFREVWNMTKPRNGGSG-WL 325
Query: 225 LISTKLGE 232
+ + +
Sbjct: 326 VAGVQALQ 333
>gi|194212576|ref|XP_001497048.2| PREDICTED: similar to Import inner membrane translocase subunit
TIM44, mitochondrial [Equus caballus]
Length = 488
Score = 67.6 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
T +++V+ +I+ V FD FL + N ++++ G++ ++ Y
Sbjct: 297 TEMSEVLTEILRVDPAFDKDRFLQQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAH 356
Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDP 200
+ K+ S ++ ID++ + + E + I Q + + ++ DP
Sbjct: 357 PIQQAKALGLQFHSRILDIDNIDLAMGKMMEQGPVLIITFQAQLVMVVKNPKGEVVEGDP 416
>gi|224000153|ref|XP_002289749.1| tim44-like protein [Thalassiosira pseudonana CCMP1335]
gi|220974957|gb|EED93286.1| tim44-like protein [Thalassiosira pseudonana CCMP1335]
Length = 252
Score = 67.6 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/201 (12%), Positives = 66/201 (32%), Gaps = 12/201 (5%)
Query: 39 KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF 98
+ K K D + S+ + + R + + DF
Sbjct: 42 QQRVEKAHQKITHLKEDAAEAWETSQNPWVYRASSVYDTLTAESEFAAASRQLQKLDPDF 101
Query: 99 DPKDFLNEA-RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157
+++ + ++ I+ F EG++ ++ + VY + RK + ++++
Sbjct: 102 TLENWKRDVVEHTLPQIMKLFLEGRIQELKPWLGEAVYNRLAAEVRARKKEGVQMDTNIL 161
Query: 158 GIDDMKIINASIEENTVYIT--------IRIVGQFISASYDKD-NLLISSDPEIFGKVID 208
I + +I+ + ++V + + + Q I K + ++ +
Sbjct: 162 AIMNAEILACELAGSSVNVDKGDDPILLLHFMCQQIHCVRKKKIDDIVEGSEDDIRANSY 221
Query: 209 IWTFVRNIPPS--NPNWVLIS 227
+ F R NW ++
Sbjct: 222 VVAFQREYNEEKMELNWKIVD 242
>gi|284043595|ref|YP_003393935.1| import inner membrane translocase subunit Tim44 [Conexibacter
woesei DSM 14684]
gi|283947816|gb|ADB50560.1| import inner membrane translocase subunit Tim44 [Conexibacter
woesei DSM 14684]
Length = 216
Score = 67.3 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 58/152 (38%), Gaps = 6/152 (3%)
Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
++ + I FDP F A ++ A+ ++ + A L+ +++ ++ ++
Sbjct: 50 APDEGIALIRRADPAFDPAGFERRAEQAFLALGQAWQDRDREAARPLMSPGLHKSWSANV 109
Query: 143 STRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD-KDNLLISSDPE 201
K + +D + + +T+R +IS D + + +I+ D
Sbjct: 110 QMFVDEHKRNVLEGMRVDSLAPVKVVHGNAFDALTVRFTATWISYEVDERTDRVIAGD-R 168
Query: 202 IFGKVIDIWTFVRNIPPSNP----NWVLISTK 229
+ +TF R++ +WVL +
Sbjct: 169 TPQSFTEFFTFQRSVDARTTDGRFDWVLSRLQ 200
>gi|322391461|ref|ZP_08064930.1| NinF protein [Streptococcus peroris ATCC 700780]
gi|321145544|gb|EFX40936.1| NinF protein [Streptococcus peroris ATCC 700780]
Length = 331
Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/211 (11%), Positives = 66/211 (31%), Gaps = 24/211 (11%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
IL+ + F+ L L D+ + N
Sbjct: 85 MTILIMFGVGAFLLYMLIKYL----------------------NDQNTPPETPYRRHTTN 122
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+ N+ + + +FD F + A+ Y + ++ + +A+ L
Sbjct: 123 YEPEPTSHRRVENNNQAIDRLRYHDPNFDASTFTSWAKEVYIQLQAAWTKKDWNAVRSLE 182
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS--AS 188
+ +Y+ + L ++ V +++++I + + + + I+ +
Sbjct: 183 SASLYKQHSTQLEDYIQSKTTNVLERVCVENVRIKDFNSNPDGNDTLVVILSSTLRDYVV 242
Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
D+ +I +P+ + F+R
Sbjct: 243 EDESRKVIEGNPQKDLFTVYQMNFIRKHGSQ 273
>gi|260220358|emb|CBA27818.1| hypothetical protein Csp_A04170 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 319
Score = 66.9 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/241 (9%), Positives = 76/241 (31%), Gaps = 25/241 (10%)
Query: 5 KMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEK---PFSGFFSGKYVFSKRDERGIIT 61
+ +L+F + V + + + + + PF+ +G +
Sbjct: 91 GLGEAFGNVLMFGLLALGVMMLIGMFMRSRKPAAQAASPFAFQGAGPAPVQDLKQYRAEN 150
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDI---------VSVYTDFDPKDFLNEARNSYE 112
+G + + +F + I V FD + FL A+ ++
Sbjct: 151 VGNDASARPWERSSMVFEAPQPAAQGGSMIGSALMGSQTWGVPAGFDTEGFLKSAKANFV 210
Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN-EKNVKSSLVGIDDMKIINASIEE 171
+ ++ V A+ ++ + ++ L+ R+++ V + V + D +++
Sbjct: 211 TLQAAWDRSDVAALRAMMTDDMTREIQTQLAERETHTGAGVNHTDVVMIDARLLGIEELP 270
Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ ++ ++ ++W + + W++ +
Sbjct: 271 DEYMASVEF-----------SGMIREEPSAGPSPFREVWNMTK-AKNGSSGWLVAGVQAL 318
Query: 232 E 232
+
Sbjct: 319 Q 319
>gi|87311137|ref|ZP_01093261.1| hypothetical protein DSM3645_18996 [Blastopirellula marina DSM
3645]
gi|87286228|gb|EAQ78138.1| hypothetical protein DSM3645_18996 [Blastopirellula marina DSM
3645]
Length = 707
Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 6/137 (4%)
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
+ + FD F A N++ I ++ + + +I V VY+ F+ +S +
Sbjct: 118 LEALKESDPSFDLPQFKQRAENAFGKIQRAWSDQDLASIHAFVSDGVYERFSLQISEQHE 177
Query: 148 NEKNVKSSLVGIDDMKIINA----SIEENTVYITIRIVGQFISASYDKD-NLLISSDPEI 202
V I M+ I + + I++R+ + D+ LI
Sbjct: 178 LGYRNVIEDVRILKMEPIEIIASRNDQNAFEVISLRVQARGKDYRVDRTTGKLIPGSKSN 237
Query: 203 FGKVIDIWTFVRNIPPS 219
++WTF+R
Sbjct: 238 -ESFSEVWTFLRRRGAQ 253
>gi|240849189|ref|NP_001155742.1| 39S ribosomal protein L45, mitochondrial [Acyrthosiphon pisum]
gi|239789330|dbj|BAH71295.1| ACYPI008057 [Acyrthosiphon pisum]
Length = 330
Score = 66.5 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/195 (13%), Positives = 62/195 (31%), Gaps = 9/195 (4%)
Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93
+T + I+ K+K EL + +R I
Sbjct: 95 RTTFINNTGSIIEPYVPPEGDGKISPISTAGAKQK------IELLKKKKDTWQAIRKIRQ 148
Query: 94 VYTDFDP-KDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNV 152
+F+ +F+ +A++ Y + + + V + Y + ++ + +
Sbjct: 149 NEEEFELYPEFITKAQDIYLKAHTTMVNKDKQNLLQYVTEKAYVEMLHNIDNKTLRWSFI 208
Query: 153 KSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210
KS + + + IT+R + + +D+ LI + V++
Sbjct: 209 KSIEPPRVVHARVTDIITQDNLFAQITVRFHTKQTLSVFDRFGRLIFGSDVVAKDVLEYV 268
Query: 211 TFVRNIPPSNPNWVL 225
F ++I W +
Sbjct: 269 VFEKHIVNQYGMWRI 283
>gi|316966353|gb|EFV50945.1| zinc finger protein [Trichinella spiralis]
Length = 763
Score = 66.1 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 2/144 (1%)
Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
++ + I S DFDP F++EA Y + + +LV Y + + L+
Sbjct: 575 NSRAGKKIRSYDADFDPVIFIDEALKIYLDAHSALQNRDSDRLHELVTEYAYPEMWEELN 634
Query: 144 TRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201
+ + V+S + + +T+R+ + A YD+ L +
Sbjct: 635 LKSLRWQFVESVEPARVVQMRTSSVMQEDNIFAQVTVRMHTKQKLAIYDQFGRLYMGNET 694
Query: 202 IFGKVIDIWTFVRNIPPSNPNWVL 225
+ V++ + +++ W L
Sbjct: 695 VPRDVLEYIVYEKHLSNLYGKWRL 718
>gi|313216757|emb|CBY38005.1| unnamed protein product [Oikopleura dioica]
gi|313227382|emb|CBY22529.1| unnamed protein product [Oikopleura dioica]
Length = 393
Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 7/160 (4%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138
N ++ I V FD + F+ I+++ V IE Q F
Sbjct: 229 TSNSYNDTIKAIRQVDKKFDQEAFVQFLESEMIPIILEAKAINDVAVIEDWCLDAPAQRF 288
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
+ N+ + + ++I++ ++ +N I + A DKD +I
Sbjct: 289 AIKHREQAKNKITYYEKTINLQKLEILDGTVHDNMPAFQISFETNTLMAYTDKDGNVIEQ 348
Query: 199 D----PEIFGKVIDIWTFVRNIPPSNP--NWVLISTKLGE 232
+ P+ K +W+ R+ P W ++ + +
Sbjct: 349 EGYPKPDEVYKSYHVWSVCRDPMEPEPSAAWRVLECETMD 388
>gi|167718139|ref|ZP_02401375.1| hypothetical protein BpseD_03908 [Burkholderia pseudomallei DM98]
Length = 129
Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/143 (11%), Positives = 42/143 (29%), Gaps = 17/143 (11%)
Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148
+V FD + FL A+ + + ++ EG + I + + F +
Sbjct: 1 AAAPAVPAGFDTEAFLRNAKVYFVRLQAAWDEGNLADIREFTTPEM---FAEVKIDLDGR 57
Query: 149 EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208
+ V D +++ ++R L+ + +
Sbjct: 58 GAGANQTDVVQLDAELLAVEDRGGEHLASVRFH-----------GLIRETQGAAAEPFDE 106
Query: 209 IWTFVRNIPPSNPNWVLISTKLG 231
+W + + W+L +
Sbjct: 107 VWNLSK---SGSQGWLLAGIQQA 126
>gi|148690046|gb|EDL21993.1| translocase of inner mitochondrial membrane 44, isoform CRA_b [Mus
musculus]
Length = 222
Score = 65.7 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 55/179 (30%), Gaps = 33/179 (18%)
Query: 55 DERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EA 113
+ ++ D + + T +++V+ +I+ V FD FL++
Sbjct: 67 ESDNVLIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQCETDIIPN 126
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
I+++ G++ ++ + + E
Sbjct: 127 ILEAMISGELDILKDWCYEAL------------------------------AMGKMMEQG 156
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLISTKL 230
+ + Q + + + DP+ +++ +W R+ NP W L+
Sbjct: 157 PVLIVTFQAQVVMVIKNSKGEVYDGDPDKVQRMLYVWALCRDQEELNPYAAWRLLDISA 215
>gi|172087484|ref|XP_001913284.1| import inner membrane translocase subunit TIM44-like protein
[Oikopleura dioica]
gi|42601412|gb|AAS21436.1| import inner membrane translocase subunit TIM44-like protein
[Oikopleura dioica]
Length = 388
Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 7/160 (4%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEAR-NSYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138
N ++ I V FD + F+ I+++ V IE Q F
Sbjct: 224 TSNSYNDTIKAIRQVDKKFDQEAFVQFLESEMIPIILEAKAINDVAVIEDWCLDAPAQRF 283
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS 198
+ N+ + + ++I++ ++ +N I + A DKD +I
Sbjct: 284 AIKHREQAKNKITYYEKTINLQKLEILDGTVHDNMPAFQISFETNTLMAYTDKDGNVIEQ 343
Query: 199 D----PEIFGKVIDIWTFVRNIPPSNP--NWVLISTKLGE 232
+ P+ K +W+ R+ P W ++ + +
Sbjct: 344 EGYPKPDEVYKSYHVWSVCRDPMEPEPSAAWRVLECETMD 383
>gi|120612288|ref|YP_971966.1| import inner membrane translocase subunit Tim44 [Acidovorax
citrulli AAC00-1]
gi|120590752|gb|ABM34192.1| import inner membrane translocase, subunit Tim44 [Acidovorax
citrulli AAC00-1]
Length = 343
Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 16/202 (7%), Positives = 56/202 (27%), Gaps = 16/202 (7%)
Query: 35 TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMR--DIV 92
G+ P +Y + S G + +
Sbjct: 154 AGSASPSDAAVPRQYSPQNVGNDASARPFERSGMAFDASRTGGAGSGVVIGSGLSGSQNW 213
Query: 93 SVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNE--K 150
+ DFD + FL+ A+ ++ + ++ + + ++ + + L R++
Sbjct: 214 GIPADFDTQGFLDAAKRNFVTLQAAWDRSDIATLRSMMTDSMVDEIRAQLGEREALRGAS 273
Query: 151 NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210
+ V + + +++ + ++ ++ ++W
Sbjct: 274 QPNHTDVVMLEAQLLGIEDLGDGYMASVEF-----------SGMIREELSAGPSPFREVW 322
Query: 211 TFVRNIPPSNPNWVLISTKLGE 232
+ W++ + +
Sbjct: 323 NMTKP-KSGTSGWLVAGVQALQ 343
>gi|46205477|ref|ZP_00048494.2| hypothetical protein Magn03001526 [Magnetospirillum magnetotacticum
MS-1]
Length = 147
Score = 65.3 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 11/154 (7%)
Query: 79 PIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138
P+G + R D + F S I ++ V ++ +L + F
Sbjct: 3 PVGGGYSGGARPQPIQIQPDDFQAF----ERSLTEIQGAYGREDVASLRRLATPEMVGYF 58
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK-DNLLIS 197
+ L + + S V + + A E + T+ + +++ N +
Sbjct: 59 EEELRANAARGVVNRISDVKLLQGDLSEAWREGPVEFATVAMRFSLRDEVFERASNRHVE 118
Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ P+ + WTFVR W+L + + G
Sbjct: 119 NGPQEAKEF---WTFVR---EPGGPWLLSAIQQG 146
>gi|242018556|ref|XP_002429740.1| mitochondrial 50S ribosomal protein L45, putative [Pediculus
humanus corporis]
gi|212514752|gb|EEB17002.1| mitochondrial 50S ribosomal protein L45, putative [Pediculus
humanus corporis]
Length = 306
Score = 65.0 bits (156), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 8/207 (3%)
Query: 26 QLR--GVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTR 83
+L+ GVL + +P + + V G K I +
Sbjct: 42 RLKELGVLPPRFWKRRPMTITTTSTIVNPYEPPPG-DGKSSIIPKVGSTCIVDKVKEQKD 100
Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
R I + ++F+ K F EA + Y + + + V + +
Sbjct: 101 YMLAKRQITNYDSNFNTKVFPQEAHDIYVKAHTILMKNDPEELSEYVTESAIMEMMSGIK 160
Query: 144 TRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFIS---ASYDKDNLLISS 198
+ K ++S + +T+R + S A YD+ L
Sbjct: 161 NKTLRWKFIESLEPPKIVQMSVAPVIQESNLFGQVTVRFHTKQASTMLAIYDRFGRLFYG 220
Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVL 225
I V++ F ++I W L
Sbjct: 221 SETIAKDVLEYVVFEKHIVNEYGTWRL 247
>gi|326318355|ref|YP_004236027.1| import inner membrane translocase subunit Tim44 [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323375191|gb|ADX47460.1| import inner membrane translocase subunit Tim44 [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 341
Score = 65.0 bits (156), Expect = 8e-09, Method: Composition-based stats.
Identities = 17/200 (8%), Positives = 54/200 (27%), Gaps = 14/200 (7%)
Query: 35 TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSV 94
G+ P +Y + S + V
Sbjct: 154 AGSASPSDAAVPRQYSPQNVGNDASARPFERSGMAFDASRAAGSGVVIGSALSGSQNWGV 213
Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNE--KNV 152
DFD + FL+ A+ ++ + ++ + + ++ + + L R+S
Sbjct: 214 PADFDTQGFLDAAKRNFVTLQAAWDRSDIATLRSMMTDSMVDEIRSQLGERESLRGASQP 273
Query: 153 KSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTF 212
+ V + + +++ + ++ ++ ++W
Sbjct: 274 NHTDVVMLEAQLLGIEDLGDGYMASVEF-----------SGMIREEPSAGPSPFREVWNM 322
Query: 213 VRNIPPSNPNWVLISTKLGE 232
+ W++ + +
Sbjct: 323 TKP-KSGTSGWLVAGVQALQ 341
>gi|325690393|gb|EGD32397.1| hypothetical protein HMPREF9382_1351 [Streptococcus sanguinis
SK115]
Length = 237
Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 48/133 (36%), Gaps = 2/133 (1%)
Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
+ +R++ + FD + FL++A+ Y + ++ E ++ L +Y+ L
Sbjct: 42 NQEAIRELKRLDPYFDEESFLSQAKAVYLHLQSAWTEKDWASVRNLESPSLYEQHRTQLQ 101
Query: 144 TRKSNEKNVKSSLVGIDDMKIINASIEENTV-YITIRIVGQFISASYD-KDNLLISSDPE 201
+ V ++D KI + + + + D + +I DP
Sbjct: 102 EHIRAKTTNVLERVCVEDSKIKDFYPNSQGHDRLEVILSSTMRDYIKDDETGRIIEGDPT 161
Query: 202 IFGKVIDIWTFVR 214
+ F+R
Sbjct: 162 KELFTVYRMNFIR 174
>gi|241766060|ref|ZP_04763976.1| import inner membrane translocase subunit Tim44 [Acidovorax
delafieldii 2AN]
gi|241363941|gb|EER59229.1| import inner membrane translocase subunit Tim44 [Acidovorax
delafieldii 2AN]
Length = 235
Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 12/189 (6%), Positives = 57/189 (30%), Gaps = 15/189 (7%)
Query: 47 GKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMR--DIVSVYTDFDPKDFL 104
+ + + D+ + G + + + FD + FL
Sbjct: 59 PRQYSPDKVGNDASARPWERSSMAFDAARQPQGSGVVIGSGLAGSQNWGIPAGFDAEGFL 118
Query: 105 NEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK-SNEKNVKSSLVGIDDMK 163
+ A+ ++ + ++ + + ++ + + L+ R+ + V + + +
Sbjct: 119 SAAKRNFVTLQAAWDRSDIATLRSMMTDSMLDEIRTQLTERESHRGDQPNHTDVVMIEAQ 178
Query: 164 IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223
++ ++ ++ ++ ++W + ++ W
Sbjct: 179 LLGIEELDDGYMASVEF-----------SGMIREELSAGPSPFREVWNMTKPKTGTSG-W 226
Query: 224 VLISTKLGE 232
++ + +
Sbjct: 227 LVAGVQALQ 235
>gi|307184938|gb|EFN71203.1| Probable 39S ribosomal protein L45, mitochondrial [Camponotus
floridanus]
Length = 201
Score = 64.6 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 2/125 (1%)
Query: 103 FLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--ID 160
FL EA Y+ ++ K + K V Y +L + + K ++S +
Sbjct: 20 FLEEATEIYQKAHEALAAKKKGMLIKYVTESAYPKMIHNLMDKTIHWKFLESLEPARVVH 79
Query: 161 DMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN 220
+ E +T+R Q I A YD+ LI + V++ F +++
Sbjct: 80 ARTTDVITKENVFAQLTVRFHTQQILAVYDRFGRLIQGSEILRKDVLEYIVFEKHLANEY 139
Query: 221 PNWVL 225
W +
Sbjct: 140 GAWRI 144
>gi|198413804|ref|XP_002125945.1| PREDICTED: similar to Mitochondrial ribosomal protein L45 [Ciona
intestinalis]
Length = 400
Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 15/150 (10%)
Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV---------HAIEKLVDS----RVY 135
R + +F K F EA++ Y + ++ LV +
Sbjct: 132 RIVKKRVDNFHRKRFPAEAQDIYIKAHNLLNTPNWTIVNQEDTEERLQNLVTEHAYTDMV 191
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
+ + K NE +V I +I + +T+R + A YD+ L
Sbjct: 192 KGLDSKTVIWKWNESLEPPRVVRIRASPMI--TNNNYYGQVTVRFHSKQTLAIYDRFGRL 249
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
+ P+ V++ F R+I W +
Sbjct: 250 MYGSPDEARNVLEFVVFERHISHPYGCWRI 279
>gi|124267379|ref|YP_001021383.1| hypothetical protein Mpe_A2192 [Methylibium petroleiphilum PM1]
gi|124260154|gb|ABM95148.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 311
Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/203 (9%), Positives = 56/203 (27%), Gaps = 17/203 (8%)
Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87
R V+ + G + + + + +
Sbjct: 124 RFVMRRMAG--GSAGPRPALAGAGAGGHGGATQPAWPAPAEPLQRRVEPSPVAAVPPIAM 181
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
+ ++ DFD F A+ + + + ++ + + F +
Sbjct: 182 VSTGGALPADFDAAGFERLAKQIFIRLQAANDTADLNDLRAFTTPEL---FASLRLDLQE 238
Query: 148 NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
+ + + V D ++++ + E+ +++R L+
Sbjct: 239 RGETSQQTDVLKIDAEVLDLAREDGRQVVSVRFH-----------GLVRELSDAAATDFD 287
Query: 208 DIWTFVRNIPPSNPNWVLISTKL 230
++W V+ S P W + +
Sbjct: 288 EVWHLVKPDDDSRP-WAIAGIEQ 309
>gi|171059204|ref|YP_001791553.1| import inner membrane translocase subunit Tim44 [Leptothrix
cholodnii SP-6]
gi|170776649|gb|ACB34788.1| import inner membrane translocase subunit Tim44 [Leptothrix
cholodnii SP-6]
Length = 333
Score = 64.2 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/184 (9%), Positives = 55/184 (29%), Gaps = 15/184 (8%)
Query: 47 GKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNE 106
+ + G G+ ++ + P + ++ DFD F
Sbjct: 163 PAAMQRSNAQEGSAAASFGQAGNSAGFNSASAPAFEPIGAAPTAAANLPADFDQAGFERI 222
Query: 107 ARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN 166
A+ + + + G ++ + + F + +++ V ++++
Sbjct: 223 AKMIFIRMQAANDSGDLNDLRSFTTPEM---FAHIRLELQERGNAPQTTDVVDVAAEVLD 279
Query: 167 ASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLI 226
+ + + +++R + + +IW V+ + NW +
Sbjct: 280 LTRDTDRDIVSVRYH-----------GQIREAAGAPVTSFDEIWHLVQP-RDGSRNWAIS 327
Query: 227 STKL 230
+
Sbjct: 328 GIQQ 331
>gi|221056238|ref|XP_002259257.1| Mitochondrial import inner membrane translocase [Plasmodium
knowlesi strain H]
gi|193809328|emb|CAQ40030.1| Mitochondrial import inner membrane translocase,putative
[Plasmodium knowlesi strain H]
Length = 467
Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 58/146 (39%), Gaps = 2/146 (1%)
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLV 130
+ I T L +R++ +F + + + IV+S+ G +
Sbjct: 296 NPILGKLFGETELAAALREMKMYDQNFKLSELMYLFEFVISKHIVESYLIGDEETLRVHC 355
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYITIRIVGQFISASY 189
+ N S++ RK + + ++++ + ++ A +EE++ + Q I+
Sbjct: 356 GQSAFNSLNASINERKKKKVYLDTNVLIYKNHELKGAQRMEESSPWFIFTFHTQQINCLK 415
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRN 215
+ ++ +I + + +V+ ++
Sbjct: 416 NANDEIIEGNIDDIREVVYTIALSKH 441
>gi|296533885|ref|ZP_06896415.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
gi|296265797|gb|EFH11892.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
Length = 47
Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 6 MDSGD-FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF 51
M G ++LFA + F+ L+LR VLG++ G E+P +
Sbjct: 1 MSGGFPVDLILFAMVAAFLVLRLRSVLGRRQGFERPPQERPAPGQAR 47
>gi|167737169|ref|ZP_02409943.1| hypothetical protein Bpse14_03836 [Burkholderia pseudomallei 14]
Length = 135
Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 40/135 (29%), Gaps = 17/135 (12%)
Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
FD + FL A+ + + ++ EG + I + + F + +
Sbjct: 15 GFDTEAFLRNAKVYFVRLQAAWDEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTD 71
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
V D +++ ++R L+ + ++W +
Sbjct: 72 VVQLDAELLAVEDRGGEHLASVRFH-----------GLIRETQGAAAEPFDEVWNLSK-- 118
Query: 217 PPSNPNWVLISTKLG 231
+ W+L +
Sbjct: 119 -SGSQGWLLAGIQQA 132
>gi|262283507|ref|ZP_06061273.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
gi|262260998|gb|EEY79698.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
Length = 310
Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 42/119 (35%), Gaps = 2/119 (1%)
Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145
+ +R + +FD + FL++ + Y + ++ E ++ L +Y + L
Sbjct: 117 EAIRQLKQQDPNFDEERFLSQVKVIYLRLQSAWTEKDWASVRGLESPSLYDQHSTQLQEH 176
Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTV-YITIRIVGQFISASYD-KDNLLISSDPEI 202
+ V +++ KI + + + + D + +I DP
Sbjct: 177 IRAKTTNVLERVRVENSKIKDFYPNPQGHDRLEVILSSTMRDYIRDDETGRIIEGDPTK 235
>gi|221103937|ref|XP_002159080.1| PREDICTED: similar to mitochondrial ribosomal protein L45, partial
[Hydra magnipapillata]
gi|221118615|ref|XP_002159504.1| PREDICTED: similar to mitochondrial ribosomal protein L45, partial
[Hydra magnipapillata]
Length = 99
Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 1/94 (1%)
Query: 134 VYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
+ F + + + + + + S + +T+R+ + I D+ N
Sbjct: 2 LQNQFTNPANKPYWR-FVKEVEKPRVINAALSAVSENDLYAQVTVRLHTEQILTIRDRFN 60
Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
+++ DP+ VID F R++P W +
Sbjct: 61 RIVTGDPKTPRSVIDYVVFERHLPDPYGKWRICG 94
>gi|167892865|ref|ZP_02480267.1| hypothetical protein Bpse7_03801 [Burkholderia pseudomallei 7894]
Length = 133
Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 40/135 (29%), Gaps = 17/135 (12%)
Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
FD + FL A+ + + ++ EG + I + + F + +
Sbjct: 13 GFDTEAFLRNAKVYFVRLQAAWDEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTD 69
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
V D +++ ++R L+ + ++W +
Sbjct: 70 VVQLDAELLAVEDRGGEHLASVRFH-----------GLIRETQGAAAEPFDEVWNLSK-- 116
Query: 217 PPSNPNWVLISTKLG 231
+ W+L +
Sbjct: 117 -SGSQGWLLAGIQQA 130
>gi|167814302|ref|ZP_02445982.1| hypothetical protein Bpse9_04118 [Burkholderia pseudomallei 91]
Length = 141
Score = 63.8 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 40/135 (29%), Gaps = 17/135 (12%)
Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
FD + FL A+ + + ++ EG + I + + F + +
Sbjct: 21 GFDTEAFLRNAKVYFVRLQAAWDEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTD 77
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
V D +++ ++R L+ + ++W +
Sbjct: 78 VVQLDAELLAVEDRGGEHLASVRFH-----------GLIRETQGAAAEPFDEVWNLSK-- 124
Query: 217 PPSNPNWVLISTKLG 231
+ W+L +
Sbjct: 125 -SGSQGWLLAGIQQA 138
>gi|221102145|ref|XP_002170372.1| PREDICTED: similar to mitochondrial ribosomal protein L45, partial
[Hydra magnipapillata]
Length = 98
Score = 63.4 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 32/77 (41%)
Query: 151 NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210
+ + + + S + +T+R+ + I D+ N +++ DP+ VID
Sbjct: 17 VKEVEKPRVINAALSAVSENDLYAQVTVRLHTEQILTIRDRFNRIVTGDPKTPRSVIDYV 76
Query: 211 TFVRNIPPSNPNWVLIS 227
F R++P W +
Sbjct: 77 VFERHLPDPYGKWRICG 93
>gi|121593290|ref|YP_985186.1| import inner membrane translocase subunit Tim44 [Acidovorax sp.
JS42]
gi|120605370|gb|ABM41110.1| import inner membrane translocase, subunit Tim44 [Acidovorax sp.
JS42]
Length = 335
Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/200 (8%), Positives = 57/200 (28%), Gaps = 14/200 (7%)
Query: 35 TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSV 94
G+ +Y K + V
Sbjct: 148 AGSAPAADARMPRQYSPDKVGNDASARPWERGGMAFQAPAAAATGGIIGSALSGSQNWGV 207
Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN--EKNV 152
FD + FL+ A+ ++ + ++ V + ++ + + L+ R+S+ ++
Sbjct: 208 PAGFDTEGFLSAAKRNFTTLQAAWDRSDVATLRSMMTDSMVDEIRTQLNERESHRGDQQP 267
Query: 153 KSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTF 212
+ V + + +++ + ++ ++ ++W
Sbjct: 268 NQTDVIMLEAQLLGIEDLGDGYMASVEF-----------SGMIREEPSAGPSPFREVWNM 316
Query: 213 VRNIPPSNPNWVLISTKLGE 232
+ ++ W++ + +
Sbjct: 317 TKPKNGASG-WLVAGVQALQ 335
>gi|322390169|ref|ZP_08063701.1| hypothetical protein HMPREF8577_1171 [Streptococcus parasanguinis
ATCC 903]
gi|321143129|gb|EFX38575.1| hypothetical protein HMPREF8577_1171 [Streptococcus parasanguinis
ATCC 903]
Length = 327
Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/169 (13%), Positives = 50/169 (29%), Gaps = 2/169 (1%)
Query: 53 KRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE 112
++ + + +R I + FD FL++ + Y
Sbjct: 101 AKEANDSDESFSSNSGPKRTTEERAGRPIENNYEAIRRIRKLDPMFDEDRFLSQVKLVYL 160
Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEEN 172
+ ++ E +++ L + +Y+ L + V ++D KI +
Sbjct: 161 QLQSAWTEKDWNSVRNLESTSLYEQHLTQLQEHIRAKTTNVLERVRVEDSKIKDFIENPE 220
Query: 173 TV-YITIRIVGQFISASY-DKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
I + + D+ +I DP + F+R
Sbjct: 221 GNDRIEVILSSTMRDYIRNDETGRVIEGDPTKDLFTVYRMVFLREHGAQ 269
>gi|317404450|gb|EFV84863.1| hypothetical protein HMPREF0005_02511 [Achromobacter xylosoxidans
C54]
Length = 178
Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/187 (10%), Positives = 53/187 (28%), Gaps = 17/187 (9%)
Query: 44 FFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDF 103
+ ++ L + P + V DFD +F
Sbjct: 2 GANNAPGQPQQQPMWREALKPTAPAAAPVAAAAAAPAAVLPKAGDDNNWFVPGDFDTPNF 61
Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK 163
L +A+ + I + G + + + + L+ R + V + + +
Sbjct: 62 LKQAKEQFVRIQAVWDSGSTDRLRDYLTDDLITELKPQLAER---GAAPNKTEVVLLNAE 118
Query: 164 IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNW 223
++ + ++R +L + + ++W + +N W
Sbjct: 119 LLGIETVSDGHLASVRF-----------SGMLRETPGAEAFRFEEVWNLFKP---ANGGW 164
Query: 224 VLISTKL 230
+L +
Sbjct: 165 LLAGIQQ 171
>gi|222110012|ref|YP_002552276.1| import inner membrane translocase subunit tim44 [Acidovorax ebreus
TPSY]
gi|221729456|gb|ACM32276.1| import inner membrane translocase subunit Tim44 [Acidovorax ebreus
TPSY]
Length = 335
Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/200 (8%), Positives = 57/200 (28%), Gaps = 14/200 (7%)
Query: 35 TGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSV 94
G+ +Y K + V
Sbjct: 148 AGSAPAADARMPRQYSPDKVGNDASARPWERGGMAFQAPAAAATGGIIGSALSGSQNWGV 207
Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN--EKNV 152
FD + FL+ A+ ++ + ++ V + ++ + + L+ R+S+ ++
Sbjct: 208 PAGFDTEGFLSAAKRNFTTLQAAWDRSDVATLRSMMTDSMVDEIRTQLNERESHRGDQQP 267
Query: 153 KSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTF 212
+ V + + +++ + ++ ++ ++W
Sbjct: 268 NQTDVIMLEAQLLGIEDLGDGYMASVEF-----------SGMIREEPSAGPSPFREVWNM 316
Query: 213 VRNIPPSNPNWVLISTKLGE 232
+ ++ W++ + +
Sbjct: 317 TKPKNGASG-WLVAGVQALQ 335
>gi|322387219|ref|ZP_08060829.1| NinF protein [Streptococcus infantis ATCC 700779]
gi|321141748|gb|EFX37243.1| NinF protein [Streptococcus infantis ATCC 700779]
Length = 246
Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/214 (11%), Positives = 63/214 (29%), Gaps = 25/214 (11%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
IL+ + F+ L L +++ + +
Sbjct: 1 MNILIMFGVGGFILFMLIKYL-----------------------NDQNSSSGKSYGSSTS 37
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+ + + +FD F + A+ Y + ++ + + + L
Sbjct: 38 YQPQPTSHRRVENNIQAIDRLRYYDPNFDASAFTSWAKEVYIQLQAAWTKKDWNLVRSLE 97
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS--AS 188
+Y + L ++ V +++++I + + + + I+ +
Sbjct: 98 SVSLYTQHSAQLEDYIQSQTTNVLERVYVENVRIKDFNSNPDGNDTLVVILSSTLRDYVI 157
Query: 189 YDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222
DK +I DP+ + F+R N
Sbjct: 158 DDKTRKVIEGDPQQDLFTVYQMNFIRKHGSQTEN 191
>gi|307543929|ref|YP_003896408.1| hypothetical protein HELO_1340 [Halomonas elongata DSM 2581]
gi|307215953|emb|CBV41223.1| hypothetical protein HELO_1340 [Halomonas elongata DSM 2581]
Length = 272
Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 47/172 (27%), Gaps = 18/172 (10%)
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ G + + I FD + FL A+ + + ++
Sbjct: 115 AMAGANGTTSQASREADAQAFQSSASLGGTTHIGDEPAWFDRERFLGGAKEHFMTLQRAW 174
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
I+ V +Y +N + L+ ++ + + T+
Sbjct: 175 DNNDFTLIQDYVTPELYNLLRQEREQHPANNRTEIVRLI----AELGSVRETDQQAEATV 230
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G D++ + + W VR++ P W + +
Sbjct: 231 LFHG-----ILDENG--------AQNEFNETWHLVRDLRDGAP-WYVQGIEQ 268
>gi|196000530|ref|XP_002110133.1| hypothetical protein TRIADDRAFT_53791 [Trichoplax adhaerens]
gi|190588257|gb|EDV28299.1| hypothetical protein TRIADDRAFT_53791 [Trichoplax adhaerens]
Length = 304
Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 50/144 (34%), Gaps = 6/144 (4%)
Query: 88 MRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD----SRVYQDFNDSLS 143
+ I F+ DF +A Y A ++ + L + F +
Sbjct: 136 VAVIKRKAKPFNISDFKLQAEKIYIATNEALASQDKTRLHTLTTEIAFHELRSAFKNRQI 195
Query: 144 TRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIF 203
+ ++ I + + + IT+++ + I A YD+ N L++ + +
Sbjct: 196 KWQCLGTASAPRIINIRVIPLED--KTNTFAQITVKLQLKQILAVYDQYNRLLTGSEDRY 253
Query: 204 GKVIDIWTFVRNIPPSNPNWVLIS 227
+ + F R++ N W +
Sbjct: 254 KQPTEYVVFERHLAKPNSPWRICG 277
>gi|156098709|ref|XP_001615370.1| mitochondrial import inner membrane translocase [Plasmodium vivax
SaI-1]
gi|148804244|gb|EDL45643.1| mitochondrial import inner membrane translocase, putative
[Plasmodium vivax]
Length = 461
Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 19/146 (13%), Positives = 57/146 (39%), Gaps = 2/146 (1%)
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLV 130
+ I T L +R++ +F + + + IV+S+ G +
Sbjct: 290 NPILGKLFGETELAAALREMKMQDKNFKLCELMYLFEFVISKHIVESYLIGDEETLRLHC 349
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYITIRIVGQFISASY 189
+ N S++ RK + + ++++ + ++ A +EE++ + Q I+
Sbjct: 350 GQSAFNSLNASINERKKKKVYLDTNVLIYKNHELKGAQRMEESSPWFIFTFHTQQINCLK 409
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRN 215
+ ++ ++ + +V+ ++
Sbjct: 410 NANDEIVEGHIDDIREVVYTIALSKH 435
>gi|319942109|ref|ZP_08016427.1| hypothetical protein HMPREF9464_01646 [Sutterella wadsworthensis
3_1_45B]
gi|319804319|gb|EFW01203.1| hypothetical protein HMPREF9464_01646 [Sutterella wadsworthensis
3_1_45B]
Length = 330
Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 37/241 (15%), Positives = 80/241 (33%), Gaps = 32/241 (13%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVL-GKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
+G ++ + VF +R L ++ +G E+ +
Sbjct: 102 GAGISSLITGLLLAVVVFFVVRMFLMRRRPQTAGGPAGSNPFDQQRQTDMEQTMQRESNS 161
Query: 66 KKKDNLDSINELFPIGT--------------RLNKVMRDIVSVYTDFDPKDFLNEARNSY 111
+ N G+ + + DFD + FL AR++Y
Sbjct: 162 APQQNWQQSQGGVRSGSLMDQLMGGAASESSSTAESSGLVDVTPVDFDREGFLKTARDNY 221
Query: 112 EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE 171
+ ++ G V I + ++ L RK V + V + +++ + ++
Sbjct: 222 LKLQQAWDTGNVIEISDFTSNEIFTAVTHQLRERKGE---VYHTEVKSLENELLGIAQQD 278
Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
T Y ++R G ++S +PE +IW + + + W+L + +
Sbjct: 279 GTYYASVRFFGSL----------VVSGEPET---FDEIWVLEKPVTGTGG-WLLCAIRQN 324
Query: 232 E 232
E
Sbjct: 325 E 325
>gi|239906247|ref|YP_002952987.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
gi|239796112|dbj|BAH75101.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
Length = 280
Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/219 (10%), Positives = 56/219 (25%), Gaps = 25/219 (11%)
Query: 20 TFFVFLQLRGVLGKKTGNEKPFSGFFSG-------KYVFSKRDERGIITLGKGKKKDNLD 72
FV ++ K G++ ++ RG + ++
Sbjct: 76 AMFVLFRVLSGRRNKNGDQTQAPPRSDDQDDRDDDAPPQNQPPRRGPDMYTNAQATWDML 135
Query: 73 SINELFP--IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+ P + + ++FL A+ +Y I S + V
Sbjct: 136 RSPDKRPGTPARADGQAAPPAPANAPAGSDEEFLAGAKMAYSRIAASLGGRDFGDLASFV 195
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
+ ++L + + + + + + +
Sbjct: 196 SPAYLAELQNTLPQTPAGRP-----DILLINAALAERRETPGRTVMVVDY-----DVLAR 245
Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
+ + + WTF R+ NW+L + +
Sbjct: 246 QPGA------TENTTLRERWTFSRDNAAPGANWLLDAMQ 278
>gi|257095873|ref|YP_003169514.1| import inner membrane translocase subunit Tim44 [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257048397|gb|ACV37585.1| import inner membrane translocase subunit Tim44 [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 303
Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/227 (11%), Positives = 68/227 (29%), Gaps = 21/227 (9%)
Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
+ +F+++ + V +L L ++ + + S ++ G+
Sbjct: 94 MGEGLANFVMIALLVVAAVVVFKL---LFRR---KAAPASASSEAMQYAGVGGPGMAPPP 147
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKV 123
+ + L I +V DFD FL A+ ++ + + G +
Sbjct: 148 FDPRPASAGLAAHGDDSPAALQPSGAPIANVPADFDSDGFLRIAKLNFIRLQAANDAGNL 207
Query: 124 HAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQ 183
I + V ++ + R + + V + +++ E ++R
Sbjct: 208 DDIREFVSPELFAEIRMQFEERAKA---PQQTDVVTLNAQLLEVVTEVTRHIASVRF--- 261
Query: 184 FISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++ ++W + + WV+ +
Sbjct: 262 --------SGMIREEAGAAAAPFDEVWNLSKPV-EGGKGWVVAGIQQ 299
>gi|70943748|ref|XP_741884.1| mitochondrial import inner membrane translocase, [Plasmodium
chabaudi chabaudi]
gi|56520543|emb|CAH80928.1| mitochondrial import inner membrane translocase, putative
[Plasmodium chabaudi chabaudi]
Length = 367
Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 55/138 (39%), Gaps = 2/138 (1%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138
T L +R + +F + + + IV+S+ G + +
Sbjct: 204 GETELAAALRVMKMEDKNFKLSELMYLFEFVISKHIVESYLIGDEETLRLHCGQAAFNSL 263
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYITIRIVGQFISASYDKDNLLIS 197
N S++ RK + + ++++ D ++ A +EE++ + Q I+ +K++ ++
Sbjct: 264 NSSINERKKKKLFLDTNVLIYKDHELKGAQRMEESSPWFIFTFHTQQINCLKNKNDEIVE 323
Query: 198 SDPEIFGKVIDIWTFVRN 215
+ +V+ ++
Sbjct: 324 GKIDDIREVVYTMALSKH 341
>gi|256828118|ref|YP_003156846.1| import inner membrane translocase subunit Tim44 [Desulfomicrobium
baculatum DSM 4028]
gi|256577294|gb|ACU88430.1| import inner membrane translocase subunit Tim44 [Desulfomicrobium
baculatum DSM 4028]
Length = 283
Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 20/180 (11%), Positives = 51/180 (28%), Gaps = 16/180 (8%)
Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
R + G + + + + T N FD ++FL+ A+ +Y
Sbjct: 118 RSRQPAAQTAGGPSQTHDMNRGAWDNLRTAQNHTSTSTPEYPAGFDAREFLDGAKAAYTR 177
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
+ ++ + + + + V+ + + + + + ++ N
Sbjct: 178 LQAAWDARDLDDLRQFTSTEVFAEIQSQAEADPNPG----KTEILFLEASLLEVKAVGNQ 233
Query: 174 VYITIRIVGQFISASYDKDNLLISSDPEIFGK-VIDIWTFVRNIPPSNPNWVLISTKLGE 232
T+ + V + W F R +WV+ + E
Sbjct: 234 TIATVLFDTMLR-----------EDSTSAPAEQVREAWHFSRYETGGAKHWVVEGIQQLE 282
>gi|258597316|ref|XP_001347936.2| mitochondrial inner membrane translocase subunit TIM44, putative
[Plasmodium falciparum 3D7]
gi|254832659|gb|AAN35849.2| mitochondrial inner membrane translocase subunit TIM44, putative
[Plasmodium falciparum 3D7]
Length = 470
Score = 62.3 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 60/146 (41%), Gaps = 2/146 (1%)
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLV 130
+ I T L +R++ + +F + + + IV+S+ G +
Sbjct: 299 NPILGKLFGETELAAALREMKMIDKNFKLSELMYLFEYVISKHIVESYLIGDEETLRLHC 358
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYITIRIVGQFISASY 189
S + N S++ RK + + ++++ + ++ A +EE++ + Q I+
Sbjct: 359 GSSAFNSLNASITERKKKKVFLDTNVLIYKNHELKGAQRMEESSPWFIFTFHTQQINCLK 418
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRN 215
+K++ +I + +V+ ++
Sbjct: 419 NKNDEIIEGKIDDIREVVYTIALSKH 444
>gi|224823518|ref|ZP_03696627.1| conserved hypothetical protein [Lutiella nitroferrum 2002]
gi|224603973|gb|EEG10147.1| conserved hypothetical protein [Lutiella nitroferrum 2002]
Length = 302
Score = 61.9 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 16/194 (8%), Positives = 52/194 (26%), Gaps = 19/194 (9%)
Query: 37 NEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYT 96
+ + + + + S P + +
Sbjct: 127 FRRKAGNPAGQLPQAAGVPNGMAQEAARFEPIPKIGSGFGTAPSYGGAPMAASSLARLPD 186
Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
+ +FL +A+ ++ + + I K + +++ + + +
Sbjct: 187 GTETPNFLRQAKATFLHLQSLNTPDSLEEIRKYLTPDLFEALRADI-----AGNDDVADF 241
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
+D ++I A E ++R + + + W +V++
Sbjct: 242 PQLDC-QLIEAVEEGGRYIASVRF-----------SGSVSETVNAAAVPFGETWHYVKD- 288
Query: 217 PPSNPNWVLISTKL 230
+ W+L +
Sbjct: 289 -KNGSRWLLAGIQQ 301
>gi|167749610|ref|ZP_02421737.1| hypothetical protein EUBSIR_00568 [Eubacterium siraeum DSM 15702]
gi|167657363|gb|EDS01493.1| hypothetical protein EUBSIR_00568 [Eubacterium siraeum DSM 15702]
Length = 321
Score = 61.9 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 22/158 (13%), Positives = 54/158 (34%), Gaps = 3/158 (1%)
Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
+ G + +++ N + P T + + I +F D + + Y I +++ +
Sbjct: 102 SGGGTTRPSSMNGANVVLPNRTEQIEGI--IKQKDPNFSASDLITFTKQVYIDIENAWCK 159
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
+ + ++ +Y + + + ID + + + Y+T +
Sbjct: 160 RDMTPVRPVMHENLYNTTCKQVQAKIEQGVVYHYESIAIDTAYLTSYERDSQFEYVTAYL 219
Query: 181 VGQFISASYD-KDNLLISSDPEIFGKVIDIWTFVRNIP 217
+ I D K +I D FVR++
Sbjct: 220 TSRMIDYQVDEKTGKIIRGDKTTRWVQKYKMKFVRSLG 257
>gi|167835465|ref|ZP_02462348.1| hypothetical protein Bpse38_03171 [Burkholderia thailandensis
MSMB43]
Length = 134
Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 42/135 (31%), Gaps = 17/135 (12%)
Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
FD + FL A+ + + ++ EG + I + + F + +
Sbjct: 14 GFDTEAFLRNAKVYFVRLQAAWDEGNLADIREFTTPEM---FAEVKIDLDGRGAGANQTD 70
Query: 157 VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
V D +++ + + ++R L+ + ++W +
Sbjct: 71 VVQLDAELLAVEDRGDEHFASVRFH-----------GLIRETQGAAAEPFNEVWNLSK-- 117
Query: 217 PPSNPNWVLISTKLG 231
+ W+L +
Sbjct: 118 -AGSQGWLLAGIQQV 131
>gi|170746985|ref|YP_001753245.1| import inner membrane translocase subunit Tim44 [Methylobacterium
radiotolerans JCM 2831]
gi|170653507|gb|ACB22562.1| import inner membrane translocase subunit Tim44 [Methylobacterium
radiotolerans JCM 2831]
Length = 324
Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/192 (13%), Positives = 53/192 (27%), Gaps = 12/192 (6%)
Query: 41 FSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF-D 99
F + + + + V D
Sbjct: 141 FRRRNEPAGAGAPYARTSLDDQPGARGPMGGAPGGPAAGSMFGGGQRPPQTRPVQIGPAD 200
Query: 100 PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159
+ F I D++ + L + F++ L + K S V +
Sbjct: 201 YQAF----ERLLGDIQDAYSREDRVTLGNLSTPEMVGYFDEELRGNAARGVVNKISDVKL 256
Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPP 218
+ A E+ T Y T+ + ++ ++S+D ++WTF+R
Sbjct: 257 LQGDLAEAWGEDRTDYATVAMRYALKDVMIERSSGRVVSTDSSEA---TELWTFLRQPGR 313
Query: 219 SNPNWVLISTKL 230
WVL + +
Sbjct: 314 G---WVLSAIQQ 322
>gi|146309531|ref|YP_001189996.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
mendocina ymp]
gi|145577732|gb|ABP87264.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
mendocina ymp]
Length = 284
Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/232 (9%), Positives = 67/232 (28%), Gaps = 36/232 (15%)
Query: 2 VFIKMDS---GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58
+F+ L+F I F +F L ++ + + +
Sbjct: 85 MFMGDGFEGLQIMDFLIFGLIAFLLFRFLAARRAQQQPQAATAGAPYQREMPNASNAPAA 144
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ + +++ F+ ++F+ R + ++ +
Sbjct: 145 GSNIFGAR------------------LASAAPVINAPAWFNEQNFIAAGREHFMSLQQHW 186
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
++ I + V ++ + R +S+ + +++ T+
Sbjct: 187 DADEMDKIAEFVTPQLLEFLK---RERAELGDGFQSTYIDELQVQLDGVDDNAEKTIATL 243
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G ++ +D+ +P + W R + P W++ +
Sbjct: 244 TFSGVSKTSRFDQ------GEP-----FSESWRLERAQGDNQP-WLIAGIRQ 283
>gi|170591877|ref|XP_001900696.1| Tim44-like domain containing protein [Brugia malayi]
gi|158591848|gb|EDP30451.1| Tim44-like domain containing protein [Brugia malayi]
Length = 389
Score = 60.7 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/180 (11%), Positives = 51/180 (28%), Gaps = 5/180 (2%)
Query: 50 VFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN 109
+++ + + ++ + + + + +F K F A
Sbjct: 162 PPEFHEKKESLEYALLRAEEGRFTAYQHKYFNRKHGIKRIRKRKGFENFSIKTFPATADE 221
Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDF----NDSLSTRKSNEKNVKSSLVGIDDMKII 165
Y + A++K + + + + + S +V +
Sbjct: 222 IYVEAHKALMTRDKIALQKYITETAFGKMWPDVENGSVVWELMKHIELSRVVSVRCADF- 280
Query: 166 NASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
+ I +R+ A YD+ LI V++ F +I + W L
Sbjct: 281 PHQSGNDIAQIIVRMHTMQKIALYDRFGRLILGTEHEAKPVLEYVVFENHIASFDGVWRL 340
>gi|312089990|ref|XP_003146448.1| hypothetical protein LOAG_10876 [Loa loa]
gi|307758388|gb|EFO17622.1| hypothetical protein LOAG_10876 [Loa loa]
Length = 403
Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/98 (16%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 133 RVYQDFNDSLSTRKSNEK-NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDK 191
Y + ++ K S ++ ID ++++ + E+ I I ++ +
Sbjct: 296 EAYNILSTIVNEYKKVNFNTADSRVIDIDRVEMVTGKMMEHGPVIIITFQAYMVNVVRNM 355
Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNP--NWVLIS 227
+ ++ DP+ +V +W R++ NP W ++
Sbjct: 356 EGKVVEGDPKSPVRVHHVWVMCRDMEEYNPAVAWKVLE 393
>gi|68070005|ref|XP_676914.1| mitochondrial import inner membrane translocase, [Plasmodium
berghei strain ANKA]
gi|56496822|emb|CAH94869.1| mitochondrial import inner membrane translocase, putative
[Plasmodium berghei]
Length = 355
Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/146 (14%), Positives = 57/146 (39%), Gaps = 2/146 (1%)
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLV 130
+ I T L +R + +F + + + IV+S+ G +
Sbjct: 184 NPILGKLFGETELAAALRIMKMDDKNFKLSELMYLFEFVISKHIVESYLIGDEDTLRLHC 243
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYITIRIVGQFISASY 189
+ N S++ RK + + ++++ + ++ A +EE++ + Q I+
Sbjct: 244 GEAAFNSLNSSINERKKKKLFLDTNVLIYKNHELKGAQRMEESSPWFIFTFHTQQINCLK 303
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRN 215
+KD+ ++ + +V+ ++
Sbjct: 304 NKDDEIVEGKIDDIREVVYTIALSKH 329
>gi|159483173|ref|XP_001699635.1| hypothetical protein CHLREDRAFT_141592 [Chlamydomonas reinhardtii]
gi|158281577|gb|EDP07331.1| predicted protein [Chlamydomonas reinhardtii]
Length = 311
Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 18/149 (12%)
Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKS-- 154
F ++Y+A+ + G + E V + ++ R + +
Sbjct: 160 GFSKSALQQRVLDAYKAVNAALAAGDMALAEPYVTEQTGLRLAGEVARRGRSSVTWRMVR 219
Query: 155 -------SLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
LV + + + T RI + + A YD L++ DP+ +V+
Sbjct: 220 EPKPSDIKLVHGTIVSNPLKQGKLHFAQWTARIPSRQVVAVYDNRGKLLAGDPDKELEVV 279
Query: 208 DIWTFVRNI---------PPSNPNWVLIS 227
D W F R I PS W L+
Sbjct: 280 DHWVFERPILKAWIAPRPGPSGAEWRLVE 308
>gi|291557689|emb|CBL34806.1| Tim44-like domain [Eubacterium siraeum V10Sc8a]
Length = 309
Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 52/152 (34%), Gaps = 3/152 (1%)
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ +++ N + P T + + I +F D + + Y I +++ + + +
Sbjct: 96 RPSSMNGANVVLPNRTEQIEGI--IKQKDPNFSASDLITFTKQVYIDIENAWCKRDMTPV 153
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
++ +Y + + + ID + + + Y+T + + I
Sbjct: 154 RPVMHENLYNTTCKQVQAKIEQGVVYHYESIAIDTAYLTSYERDSQFEYVTAYLTSRMID 213
Query: 187 ASYD-KDNLLISSDPEIFGKVIDIWTFVRNIP 217
D K +I D FVR++
Sbjct: 214 YQVDEKTGKIIRGDKTTRWVQKYKMKFVRSLG 245
>gi|50949925|emb|CAH10507.1| hypothetical protein [Homo sapiens]
Length = 90
Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 33/87 (37%)
Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNL 194
Y + K+ S ++ ID++ + + E + I Q + +
Sbjct: 1 YSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGE 60
Query: 195 LISSDPEIFGKVIDIWTFVRNIPPSNP 221
++ DP+ +++ +W R+ NP
Sbjct: 61 VVEGDPDKVLRMLYVWALCRDQDELNP 87
>gi|312078188|ref|XP_003141630.1| ribosomal protein L45 [Loa loa]
gi|307763207|gb|EFO22441.1| ribosomal protein L45 [Loa loa]
Length = 388
Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 5/138 (3%)
Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDF----NDSLSTRKS 147
+ +F K F A Y + A++K + + + +
Sbjct: 204 RKGFENFSVKTFPATADEIYIEAHRALMTRDKTALQKYITEAAFGKMWPDVENGSVIWEL 263
Query: 148 NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
+ S +V + + I +R+ A YD+ LI + V+
Sbjct: 264 IKHIEPSRVVSVRCADF-PHQSGNDIAQIIVRMYTMQKIALYDRFGRLILGTEQEAKPVL 322
Query: 208 DIWTFVRNIPPSNPNWVL 225
+ F +I + W L
Sbjct: 323 EYVVFENHIASFDGIWRL 340
>gi|291530805|emb|CBK96390.1| Tim44-like domain [Eubacterium siraeum 70/3]
Length = 322
Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 52/152 (34%), Gaps = 3/152 (1%)
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ +++ N + P T + + I +F D + + Y I +++ + + +
Sbjct: 109 RPSSMNGANVVLPNRTEQIEGI--IKQKDPNFSASDLITFTKQVYIDIENAWCKRDMTPV 166
Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS 186
++ +Y + + + ID + + + Y+T + + I
Sbjct: 167 RPVMHENLYNTTCKQVQAKIEQGVIYHYESIAIDTAYLTSYERDSQFEYVTAYLTSRMID 226
Query: 187 ASYD-KDNLLISSDPEIFGKVIDIWTFVRNIP 217
D K +I D FVR++
Sbjct: 227 YQVDEKTGKIIRGDKTTRWVQKYKMKFVRSLG 258
>gi|82706055|ref|XP_727222.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
gi|23482963|gb|EAA18787.1| Drosophila melanogaster CG11779 gene product, putative [Plasmodium
yoelii yoelii]
Length = 443
Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 57/146 (39%), Gaps = 2/146 (1%)
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLV 130
+ I T L +R + +F + + + IV+S+ G +
Sbjct: 272 NPILGKLFGETELAAALRVMKMDDKNFKLSELMYLFEYVISKHIVESYLIGDEDTLRLHC 331
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS-IEENTVYITIRIVGQFISASY 189
+ N S++ RK + + ++++ + ++ A +EE++ + Q I+
Sbjct: 332 GEAAFNSLNLSITERKKKKLFLDTNVLIYKNHELKGAQRMEESSPWFIFTFHTQQINCLK 391
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRN 215
+KD+ +I + +V+ ++
Sbjct: 392 NKDDEIIEGKIDDIREVVYTIALSKH 417
>gi|71033659|ref|XP_766471.1| mitochondrial import inner membrane translocase [Theileria parva
strain Muguga]
gi|68353428|gb|EAN34188.1| mitochondrial import inner membrane translocase, putative
[Theileria parva]
Length = 381
Score = 59.9 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/148 (13%), Positives = 55/148 (37%), Gaps = 2/148 (1%)
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLV 130
+ I T L +R++ + F+ D + + +V+S+ +G A++
Sbjct: 215 NPIISKLFGDTSLASALREMKRLDPSFNLPDLVELVEHVIAPHVVESYLKGDGEALKLHC 274
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI-EENTVYITIRIVGQFISASY 189
+ N S+ R + + S++ + ++++ +E ++ Q I+
Sbjct: 275 GEVAFNILNTSIKERNLQKLVLDPSILILKNVELKGGMKVKEGDPWLIFNFTTQQINCLR 334
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIP 217
D + + + +V+ R+
Sbjct: 335 DTKGKVCAGQIDDIREVVYSIAISRHPN 362
>gi|325522769|gb|EGD01254.1| import inner membrane translocase subunit Tim44 [Burkholderia sp.
TJI49]
Length = 124
Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 40/137 (29%), Gaps = 17/137 (12%)
Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153
+ FD FL A+ + + ++ +G + I + + F + S
Sbjct: 1 MPAGFDADAFLRSAKVYFVRLQAAWDQGNLADIREFTTPEM---FAEIKIDLDSRGNEAN 57
Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213
+ V D +++ ++R L+ S ++W
Sbjct: 58 QTDVVQLDAELVAVEDRGIEQSASVRFH-----------GLIRESANAPAEPFDEVWNLS 106
Query: 214 RNIPPSNPNWVLISTKL 230
+ W+L +
Sbjct: 107 K---SGGQGWLLAGIQQ 120
>gi|332286636|ref|YP_004418547.1| hypothetical protein PT7_3383 [Pusillimonas sp. T7-7]
gi|330430589|gb|AEC21923.1| hypothetical protein PT7_3383 [Pusillimonas sp. T7-7]
Length = 314
Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/228 (12%), Positives = 65/228 (28%), Gaps = 29/228 (12%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
F++ S LI L F ++ +LRG G +P G + + +
Sbjct: 109 FLEFMSSLVLIGLLVFGVMYLVRRLRG------GAARPAMQQAGGMNRQNAQSQNTW--- 159
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
+ + + DFD FL A+ + I + G
Sbjct: 160 --QQASPAAAPAASAAAAPVVPAPPVDKSWFIPGDFDTSAFLANAKAQFIEIQAVWDSGD 217
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
+ + + + + L R + V + + +++ ++R
Sbjct: 218 LTRLTDYMTDDLVAEIKPELMARGEGNV----TEVVLLNAELLGIEAVSGGHLASVRY-- 271
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+L + + ++W + N W+L +
Sbjct: 272 ---------SGMLREAKDAEAFRFEEVWNLYK---GDNTGWLLAGIQQ 307
>gi|331001471|ref|ZP_08325089.1| Tim44-like domain protein [Parasutterella excrementihominis YIT
11859]
gi|329568200|gb|EGG50017.1| Tim44-like domain protein [Parasutterella excrementihominis YIT
11859]
Length = 310
Score = 59.6 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/215 (9%), Positives = 53/215 (24%), Gaps = 18/215 (8%)
Query: 17 AFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINE 76
A + F F + P S R E + + +
Sbjct: 114 AVVAFRFFAARKSGASAAASAGAPASQPTQDADFGQSRSEAAVREQPAFNPAQAVRPGSA 173
Query: 77 LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136
+ DF+ ++FLN + ++ + ++ G + + ++
Sbjct: 174 MDQFSDEPAAASESTYGAPADFNQEEFLNMSTAYFKMLQKAWDSGDMDDLANYTTDDLFI 233
Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196
+ K + + + + ++ L
Sbjct: 234 ELTHKRREIKGANL----TEIVNLNASLAGFETTPTEYVASVLF-----------TGSLK 278
Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ ++ +IW V+ W+L +
Sbjct: 279 ENGE--PTEIKEIWNLVKPKEGKTG-WLLAGIQQA 310
>gi|268575792|ref|XP_002642876.1| Hypothetical protein CBG15146 [Caenorhabditis briggsae]
gi|74784622|sp|Q616T6|RM45_CAEBR RecName: Full=Probable 39S ribosomal protein L45, mitochondrial;
Flags: Precursor
gi|187027386|emb|CAP33598.1| hypothetical protein CBG_15146 [Caenorhabditis briggsae AF16]
Length = 361
Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 7/139 (5%)
Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151
+ FD K F +A + YE + + + + + +
Sbjct: 168 KQGFEKFDVKTFCAKAEDIYERAHKAMEARDKKEMYRCITEYAFAKMWPDVENGSVR--F 225
Query: 152 VKSSLVGIDDMKIINASIEEN-----TVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
S+V + + IT+R+ + A YD+ LI + V
Sbjct: 226 ELVSIVEPSRVVAVRCFDNPPKSGNDIAQITVRMHTRQKLALYDRFGGLILGSEDEEKDV 285
Query: 207 IDIWTFVRNIPPSNPNWVL 225
++ F +I + W L
Sbjct: 286 VEYVVFENHIAVVDGEWRL 304
>gi|15604299|ref|NP_220815.1| hypothetical protein RP434 [Rickettsia prowazekii str. Madrid E]
gi|6226372|sp|O05965|Y434_RICPR RecName: Full=Uncharacterized protein RP434
gi|2073499|emb|CAA72444.1| hypothetical protein [Rickettsia prowazekii]
gi|3860991|emb|CAA14891.1| unknown [Rickettsia prowazekii]
gi|292572048|gb|ADE29963.1| hypothetical protein rpr22_CDS424 [Rickettsia prowazekii Rp22]
Length = 212
Score = 59.2 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/230 (16%), Positives = 84/230 (36%), Gaps = 26/230 (11%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSK------RDERGI 59
M +L+FA I F++ +L LG + E+ + + G+ V +D + +
Sbjct: 1 MSPQIIELLIFAIIAFYIINKLITTLGSTSEEEQIKNKSYFGEPVIKDVTYSTVKDHKKV 60
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ + + + + I FDP F+N A+ +++ I+++ +
Sbjct: 61 ERNVSRTQDIKVFKDIIVENNINAVVDGIEQIHKRLYSFDPVKFINNAKTAFQMIIEAAY 120
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
+ V + +L+D R ++F + + K + N ++I +
Sbjct: 121 KKDVKELSELIDKRYLEEFEKIIPSYG------DFFDSSALSAKYSEIYMFGNNIFIKLL 174
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
G+ + + + + WTF RN +W L + +
Sbjct: 175 FQGKNVV--------------DKIEDLQEEWTFTRNANTKEVDWFLSNIE 210
>gi|303256401|ref|ZP_07342415.1| Tim44 domain protein [Burkholderiales bacterium 1_1_47]
gi|302859892|gb|EFL82969.1| Tim44 domain protein [Burkholderiales bacterium 1_1_47]
Length = 327
Score = 58.8 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/215 (9%), Positives = 54/215 (25%), Gaps = 18/215 (8%)
Query: 17 AFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINE 76
A + F F + P S R E + + +
Sbjct: 131 AVVAFRFFAARKSGASAAASAGAPASQPTQDADFGQSRSEAAVREQPAFNPAQAVRPGSA 190
Query: 77 LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ 136
+ DF+ ++FLN + ++ + ++ G + + ++
Sbjct: 191 MDQFSDEPAAASESTYGAPADFNQEEFLNMSTAYFKMLQKAWDSGDMDDLANYTTDDLFI 250
Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196
+ K V + + + + ++ L
Sbjct: 251 ELTHKRREIKG----VNLTEIVNLNASLAGFETTPTEYVASVLF-----------TGSLK 295
Query: 197 SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ ++ +IW V+ W+L +
Sbjct: 296 ENGE--PTEIKEIWNLVKPKEGKTG-WLLAGIQQA 327
>gi|317153060|ref|YP_004121108.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
aespoeensis Aspo-2]
gi|316943311|gb|ADU62362.1| import inner membrane translocase subunit Tim44 [Desulfovibrio
aespoeensis Aspo-2]
Length = 258
Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/218 (13%), Positives = 63/218 (28%), Gaps = 27/218 (12%)
Query: 19 ITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINE-- 76
+ +F+ R + G + + D ++ +
Sbjct: 55 VAYFLVRAFR-----RRGGGPGPGTGSGSGDSGQDDGGQDDQAQPPARPTDRHEAARQMW 109
Query: 77 ------LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
P G V + V FD +FL A+ + +G + + +
Sbjct: 110 NMLGSKDAPEGGAPQAVRQSPAPVPGGFDEAEFLEGAKLFFSRFQQVSGQGDLDQLRGFL 169
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD 190
VY+ + ++ + + V + D +++ E +IT+ Q
Sbjct: 170 SDDVYE----QALAGLAAQQTIARTEVMLVDARLMERKSEGGRTWITVFYDAQLR----- 220
Query: 191 KDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+S D ++ W F R + W L S
Sbjct: 221 ---KGVSGD--QPYQLRAAWEFSRTDAEGSGLWTLESI 253
>gi|19112697|ref|NP_595905.1| TIM23 translocase complex subunit Tim44 [Schizosaccharomyces pombe
972h-]
gi|6016371|sp|O60084|TIM44_SCHPO RecName: Full=Mitochondrial import inner membrane translocase
subunit tim44; Flags: Precursor
gi|3006160|emb|CAA18420.1| TIM23 translocase complex subunit Tim44 [Schizosaccharomyces pombe]
Length = 427
Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/189 (11%), Positives = 57/189 (30%), Gaps = 8/189 (4%)
Query: 47 GKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNE 106
+ S ++ I D++ + T ++VMR + F+ + FL
Sbjct: 229 QELKKSYQESEHPIVSSIRDMADSISGVWSRMFSETEASQVMRRFKEIDPSFNTEHFLQY 288
Query: 107 ARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGID--DMK 163
R + +++ +G ++ + + + + + ++ I D+
Sbjct: 289 LREYIVPEVTEAYVKGDKEVLKTWLSEAPFSVYETTTKEYAKHGVVSVGKILDIRGVDIM 348
Query: 164 IINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPP-SNP 221
+ + Q + D L++ + + F R NP
Sbjct: 349 SQRLLQPNDIPVFIVTFRTQEVHMFKDASSGELVAGKDDRIQQCTYASVFTRVEDELDNP 408
Query: 222 N---WVLIS 227
W ++
Sbjct: 409 ETRGWRIVD 417
>gi|307111739|gb|EFN59973.1| hypothetical protein CHLNCDRAFT_133085 [Chlorella variabilis]
Length = 434
Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/220 (13%), Positives = 62/220 (28%), Gaps = 48/220 (21%)
Query: 23 VFLQLRGV-LGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIG 81
F ++RG+ LG K S + + D + +
Sbjct: 238 FFARMRGLNLGANPVFSKGREAAESIRERWETSDSPLVHRIQDAVDS---------LQTE 288
Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
+ +R+I + FD FL R + +V ++ E
Sbjct: 289 GEQARALREIRARDPSFDMVAFLRGLRADVQTVVKAYLESDEG----------------- 331
Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201
+L+ ++++++ E + ++ Q I+ + D ++ P+
Sbjct: 332 -------GLVPDPTLLDTSEVELVDIKWLEEEPIVVVQFTCQQINCTRDSFGNVVDGKPD 384
Query: 202 IFGK------VIDIWTF--VRN--IPPSN----PNWVLIS 227
+ V W R + P W L
Sbjct: 385 EVHRRVAGWWVYYYWALQQERQGYVGADGGYHPPRWQLRE 424
>gi|254571313|ref|XP_002492766.1| Peripheral mitochondrial membrane protein involved in mitochondrial
protein import [Pichia pastoris GS115]
gi|238032564|emb|CAY70587.1| Peripheral mitochondrial membrane protein involved in mitochondrial
protein import [Pichia pastoris GS115]
gi|328353226|emb|CCA39624.1| Mitochondrial import inner membrane translocase subunit TIM44
[Pichia pastoris CBS 7435]
Length = 408
Score = 58.8 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 46/137 (33%), Gaps = 4/137 (2%)
Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARN-SYEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
T KV+R + F+ ++F + R +++++ +G ++ + + F+
Sbjct: 245 TESAKVIRMFKEIDPSFNTENFNKQLREFIIPEVLEAYVQGDEAVLKTWLSEAPFNVFHA 304
Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY---ITIRIVGQFISASYDKDNLLIS 197
K ++ I + +++A + + V + K + +
Sbjct: 305 QQKQFKEQGLFSDGRILDIRGVDVLSAKVIPGNNSPALVIGARVQEVNVYRKAKTGEIAA 364
Query: 198 SDPEIFGKVIDIWTFVR 214
P+ + R
Sbjct: 365 GSPDNINLSTYVMVLTR 381
>gi|224086853|ref|XP_002186709.1| PREDICTED: hypothetical protein, partial [Taeniopygia guttata]
Length = 182
Score = 58.4 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 5/125 (4%)
Query: 105 NEARNSYEAIVDSFFEG---KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVG--I 159
+ + + + + + LV R Y D + + V+S +
Sbjct: 21 DGVKQQMQKLRQTAASQLAFNKQKLHSLVTERCYPDMVRGNRYKTIRWRFVESLEPPRVV 80
Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
+ +T+R+ + I A YD+ L+ EI V++ F R +
Sbjct: 81 HVRCEGILNRGNLYGQVTVRMHSRQILAIYDRFGRLMYGGEEIPKDVLEYVVFERYLVNP 140
Query: 220 NPNWV 224
W
Sbjct: 141 YGTWR 145
>gi|270158819|ref|ZP_06187476.1| transmembrane protein [Legionella longbeachae D-4968]
gi|289166389|ref|YP_003456527.1| hypothtical protein [Legionella longbeachae NSW150]
gi|269990844|gb|EEZ97098.1| transmembrane protein [Legionella longbeachae D-4968]
gi|288859562|emb|CBJ13527.1| putative hypothtical protein [Legionella longbeachae NSW150]
Length = 273
Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/225 (14%), Positives = 71/225 (31%), Gaps = 46/225 (20%)
Query: 8 SGDFLILLFAFITFFV--FLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
SG L+ + FFV F + + G +TG PF+ + S +
Sbjct: 88 SGILSWLILGAVLFFVVGFFRRKMQPGYQTGQSSPFNQNPLNNFTQSFSNSSMGGNSNTS 147
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA 125
F P+ FL EA+ ++ + ++ + +
Sbjct: 148 ---------------------------EYPIGFVPETFLREAKVTFNRLQAAYDQKNLQD 180
Query: 126 IEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI 185
+ + V F + + V D ++++ S + N+ ++R
Sbjct: 181 LSEFTAPEV---FAEIKMQLDERGDAPNKTEVISLDAELLDISKQSNSFIASVRF----- 232
Query: 186 SASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ +D E ++ +IW F + P W++ +
Sbjct: 233 ------TGSIKEND-EQPSQLDEIWHFRQFPNS--PQWLVGGVQQ 268
>gi|294953191|ref|XP_002787640.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239902664|gb|EER19436.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 794
Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/161 (11%), Positives = 54/161 (33%), Gaps = 6/161 (3%)
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLV 130
+ + + T + + +R++ V +F + + I+ + EG V +E
Sbjct: 634 NPMVDRIFGETEIAQSIREMKEVDPNFRLSQMAEDIEHVVAPRIIRWYLEGDVERLEAHC 693
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDM---KIINASIEENTVYITIRIVGQFISA 187
+ N S+ R + + + ++++ K + E ++ Q I+
Sbjct: 694 GEAAFAAVNASVKARHTQKLTLDTNILQPPMDVELKGAKTASEVDSPCFIFTFSTQQINC 753
Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRN--IPPSNPNWVLI 226
++ ++ + +V ++ W L
Sbjct: 754 LRNEFGEVVEGAVDDIRRVFYAMAIQKHPEPESGGCEWSLA 794
>gi|332528579|ref|ZP_08404561.1| import inner membrane translocase, subunit [Hylemonella gracilis
ATCC 19624]
gi|332041895|gb|EGI78239.1| import inner membrane translocase, subunit [Hylemonella gracilis
ATCC 19624]
Length = 247
Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/142 (8%), Positives = 48/142 (33%), Gaps = 13/142 (9%)
Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS-NEK 150
SV FD + FL A++++ + ++ + + + ++ + + + L+ R+ +
Sbjct: 118 WSVPAGFDVESFLKVAKSNFIHLQAAWDKADMVTLRSMMTDEMLAEISAQLAERERLSSG 177
Query: 151 NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIW 210
+ V + +++ ++ ++ ++W
Sbjct: 178 EPNLTEVQMLQAQLLGIEDLGGEYMASVEF-----------SGMVREDRHSGPSPFREVW 226
Query: 211 TFVRNIPPSNPNWVLISTKLGE 232
+ + W++ + +
Sbjct: 227 NMTKP-RDGSRGWLVAGVQALQ 247
>gi|324518944|gb|ADY47245.1| 39S ribosomal protein L45 [Ascaris suum]
Length = 365
Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 3/137 (2%)
Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151
+ FDPK F A + Y + + K + + + +
Sbjct: 182 KEGFEKFDPKLFGATADSIYVEAHKALMARDKVMLHKYITEHAFVKMWPDVENGSVVWEM 241
Query: 152 VKSSLVGIDDM---KIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208
V+ + +T+R+ A YDK LI V++
Sbjct: 242 VEQKEPSRVVAIRCSDSPYKSGNDIAQLTVRMHTVQKLAIYDKFGRLILGSEVEPKAVVE 301
Query: 209 IWTFVRNIPPSNPNWVL 225
F +I + W L
Sbjct: 302 YVVFENHIASLDGAWRL 318
>gi|324518594|gb|ADY47149.1| 39S ribosomal protein L45 [Ascaris suum]
Length = 373
Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 3/137 (2%)
Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151
+ FDPK F A + Y + + K + + + +
Sbjct: 182 KEGFEKFDPKLFGATADSIYVEAHKALMARDKVMLHKYITEHAFVKMWPDVENGSVVWEM 241
Query: 152 VKSSLVGIDDM---KIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208
V+ + +T+R+ A YDK LI V++
Sbjct: 242 VEQKEPSRVVAIRCSDSPYKSGNDIAQLTVRMHTVQKLAIYDKFGRLILGSEVEPKAVVE 301
Query: 209 IWTFVRNIPPSNPNWVL 225
F +I + W L
Sbjct: 302 YVVFENHIASLDGAWRL 318
>gi|328768615|gb|EGF78661.1| hypothetical protein BATDEDRAFT_90410 [Batrachochytrium
dendrobatidis JAM81]
Length = 430
Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/163 (11%), Positives = 48/163 (29%), Gaps = 2/163 (1%)
Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA-RNSYE 112
R + + + + + +R V F FL E + +
Sbjct: 239 AARRSVEQSESPLMSRVRNFLASTKVEESEHARTIRAFKQVEPTFSVDAFLKETTQYTIP 298
Query: 113 AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI-EE 171
++++F +G +++ ++K S L+ I + I + +
Sbjct: 299 ELMEAFLKGDADTLKEWCSEAALAKLTAGFESQKQQGLVSDSKLLDIRGVDIRQLKLLND 358
Query: 172 NTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVR 214
I I Q I ++ ++ ++ F +
Sbjct: 359 EVPIILIGFTTQEILLFRNRKGEIVVGSEDVILTASYAIAFTK 401
>gi|324516912|gb|ADY46671.1| 39S ribosomal protein L45 [Ascaris suum]
gi|324517061|gb|ADY46715.1| 39S ribosomal protein L45 [Ascaris suum]
gi|324517081|gb|ADY46721.1| 39S ribosomal protein L45 [Ascaris suum]
Length = 379
Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 3/137 (2%)
Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151
+ FDPK F A + Y + + K + + + +
Sbjct: 182 KEGFEKFDPKLFGATADSIYVEAHKALMARDKVMLHKYITEHAFVKMWPDVENGSVVWEM 241
Query: 152 VKSSLVGIDDM---KIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208
V+ + +T+R+ A YDK LI V++
Sbjct: 242 VEQKEPSRVVAIRCSDSPYKSGNDIAQLTVRMHTVQKLAIYDKFGRLILGSEVEPKAVVE 301
Query: 209 IWTFVRNIPPSNPNWVL 225
F +I + W L
Sbjct: 302 YVVFENHIASLDGAWRL 318
>gi|294899174|ref|XP_002776521.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239883553|gb|EER08337.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 604
Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 56/162 (34%), Gaps = 6/162 (3%)
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKL 129
+ + + T + + +R++ V +F + + I+ + EG V +E
Sbjct: 443 QNPMVDRIFGETEIAQSIREMKEVDPNFRLSQMAEDIEHVVAPRIIRWYLEGDVERLEAH 502
Query: 130 VDSRVYQDFNDSLSTRKSNEKNVKSSLVGID---DMKIINASIEENTVYITIRIVGQFIS 186
+ N S+ R + + + ++++ ++K + E ++ Q I+
Sbjct: 503 CGEAAFAAVNASVKARHTQKLTLDTNILQPPMDVELKGAKTASEVDSPCFIFTFSTQQIN 562
Query: 187 ASYDKDNLLISSDPEIFGKVIDIWTFVRN--IPPSNPNWVLI 226
++ ++ + +V ++ W L
Sbjct: 563 CLRNEFGEVVEGAVDDIRRVFYAMAIQKHPEPESGGCEWSLA 604
>gi|302848231|ref|XP_002955648.1| hypothetical protein VOLCADRAFT_106869 [Volvox carteri f.
nagariensis]
gi|300259057|gb|EFJ43288.1| hypothetical protein VOLCADRAFT_106869 [Volvox carteri f.
nagariensis]
Length = 296
Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 21/138 (15%)
Query: 110 SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIIN--- 166
+Y+++ + G + E V + ++ R V+ +V D + I
Sbjct: 156 AYKSVNLAIATGDMRYAEPFVTESMLLRLTGEVTRR-GRAARVEWRMVSEPDPRDIKLVC 214
Query: 167 --------ASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI-- 216
+ V T R+ + + A YD LI+ DP V+D W F R I
Sbjct: 215 GTVVQNPLKQGRLHFVQWTARVPSRQVVAVYDARGNLIAGDPHKELDVVDYWVFERPILK 274
Query: 217 -------PPSNPNWVLIS 227
P W L+
Sbjct: 275 ALVAPRPGPQGAEWRLLE 292
>gi|34496113|ref|NP_900328.1| hypothetical protein CV_0658 [Chromobacterium violaceum ATCC 12472]
gi|34101967|gb|AAQ58334.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 338
Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/209 (8%), Positives = 58/209 (27%), Gaps = 27/209 (12%)
Query: 24 FLQLRGVLGKKTGNE--KPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIG 81
F + +K GN + + + + + K N ++ G
Sbjct: 154 FFR------RKAGNPAANAPQPAGMPRGMADSQGQSNFDAIPKIGSGMNGGAVPAGNGFG 207
Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
N + + FL +A+ ++ + + + K + ++
Sbjct: 208 GGFNAAPAPAR-LPDGTETPHFLRQAKATFLHLQSLNTPESLEEVRKYMTPDLFSALAAD 266
Query: 142 LSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPE 201
+ + + +D ++ A++E ++ +
Sbjct: 267 I-----AGNSGVADFPQLDC-QLSEATVENGAYIASVTF-----------SGTVSEEVGA 309
Query: 202 IFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ W +V++ + W++ +
Sbjct: 310 PAVPFTETWHYVKD-GGTGGKWLVAGIQQ 337
>gi|294891975|ref|XP_002773832.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239879036|gb|EER05648.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 497
Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/168 (11%), Positives = 58/168 (34%), Gaps = 14/168 (8%)
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLV 130
+ + + T + + +R++ F + + N +I+ F EG ++
Sbjct: 324 NPMLDRVFGETEIAQSIREMKETDPHFRLSQLVEDVENVVAPSIIRWFLEGDAEDLKLHC 383
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLV---GIDDMKIINASIEENTVYITIRIVGQFISA 187
+ N S+ R++ + ++ +++ ++K + E ++ Q I+
Sbjct: 384 GEAAFAAVNASIDARRNQKLSLDPTILQGPEDLELKGAKSGGEVDSPCFIFTFSTQQINC 443
Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN-------WVLIST 228
++ ++ + +V ++ PN W +
Sbjct: 444 LRNEAGEVVEGAIDDIRQVFYAMAVQKH---PEPNTTGLKFPWRMQEI 488
>gi|218506347|ref|ZP_03504225.1| putative import inner membrane translocase protein, TIM family
[Rhizobium etli Brasil 5]
Length = 88
Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-NLLISSDPEIFGK 205
+N + S V + I A E+ Y T+ + I A ++D ++S D +
Sbjct: 1 TNGVRNRVSDVKLLQGDIAEAWREDGQEYATLAMRYSSIDAMVERDSGRVVSGDDRRPSE 60
Query: 206 VIDIWTFVRNIPPSNPNWVLISTK 229
+IWTFVR +W L + +
Sbjct: 61 STEIWTFVRK---PGGDWKLAAIQ 81
>gi|226941931|ref|YP_002797005.1| hypothetical protein LHK_03018 [Laribacter hongkongensis HLHK9]
gi|226716858|gb|ACO75996.1| hypothetical protein LHK_03018 [Laribacter hongkongensis HLHK9]
Length = 333
Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 13/177 (7%), Positives = 49/177 (27%), Gaps = 17/177 (9%)
Query: 56 ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115
+ + P + + + F+ +A+ ++ +
Sbjct: 174 PPNARAPLNPNAFKINPTGSVPVPPIGGGYAQPAALTRLPDGTEVPHFVRQAKATFMHLQ 233
Query: 116 DSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVY 175
V + K + +++ + + +D + ++ + +
Sbjct: 234 SMNNPDNVEEVRKYLTPELFEQLRADI-----AGNPETADFPQLDCQVVDASTEADGRIV 288
Query: 176 ITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
++R L+ S + W F+++ ++ WV+ + +
Sbjct: 289 ASVRF-----------SGLVSESVGAPALPFAETWHFIKS-DATSQKWVVAGIQQDQ 333
>gi|324517598|gb|ADY46868.1| Import inner membrane translocase subunit tim-44 [Ascaris suum]
Length = 323
Score = 56.9 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 48/145 (33%), Gaps = 20/145 (13%)
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARN-SYEAIVDSFFEGKVHAIEKLV 130
D I +F + +++V+ +I + FD ++L ++++F G + ++
Sbjct: 197 DRITSVFTTKSEVSEVLTEIAKIDPSFDKVEWLRFCEREVIPNVLEAFIRGDLKILQDWC 256
Query: 131 DSRVYQDFNDSLSTRKSNEK-NVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASY 189
R Y + K S ++ I + I+
Sbjct: 257 HERAYNALAAVVKEYKKVNFSTADSRVIDISKV------------------EAFMINVVK 298
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVR 214
+ + ++ D +V +W R
Sbjct: 299 NLEGKVVQGDENNPVRVHHVWVMCR 323
>gi|51473623|ref|YP_067380.1| hypothetical protein RT0421 [Rickettsia typhi str. Wilmington]
gi|51459935|gb|AAU03898.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington]
Length = 212
Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/230 (15%), Positives = 81/230 (35%), Gaps = 26/230 (11%)
Query: 6 MDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSK------RDERGI 59
M +L+FA I F++ +L LG + E+ + + G+ + + +
Sbjct: 1 MSPQIIELLIFAIIAFYIINKLITTLGSTSEEEQIKNKSYFGEPMIKDVTYSTVKANKIA 60
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
+ + + + M I FDP F+N A+ +++ I+++ +
Sbjct: 61 EKNISRVQDIKVFKDIIVEHNINAVVDGMEQIHKRLYSFDPVKFINNAKTAFQMIIEAAY 120
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
+ + + +L+D R ++F + K + N ++I +
Sbjct: 121 KKDIKELTELIDKRYLEEFEKITPSYG------DFFDSSALSAKYSEIYMFGNNIFIKLL 174
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
G+ + + + + WTF RN +W L + +
Sbjct: 175 FQGKNVV--------------DKIENLQEEWTFTRNANTKEVDWFLSNIE 210
>gi|332296059|ref|YP_004437982.1| import inner membrane translocase subunit Tim44 [Thermodesulfobium
narugense DSM 14796]
gi|332179162|gb|AEE14851.1| import inner membrane translocase subunit Tim44 [Thermodesulfobium
narugense DSM 14796]
Length = 316
Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/202 (10%), Positives = 64/202 (31%), Gaps = 20/202 (9%)
Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93
K E+ + +G K ++ + ++ + +
Sbjct: 129 KRRFERDKNYNVDSLNKEQYNTSSIYNDSFQGVKLGSIQAKMDVDRGLKEIERAFPSFSE 188
Query: 94 VYTDFDPKD-FLN----EARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148
K+ F+N + ++ + L + ++ +F + N
Sbjct: 189 EDLRSKIKEIFVNIQKAWSEKNFTML------------RNLTTNEMFLNFQKQIEELNKN 236
Query: 149 EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208
+ + M +++A +E+ +Y+T +I D ++ ++ + + +
Sbjct: 237 GITNFVENISVKRMDLVDAWMEDEKIYVTYKIEATMTDYDVDVNDNILRGNKDKLIDFQE 296
Query: 209 IWTFVRNIPPSNPNWVLISTKL 230
+W+F + + W L +
Sbjct: 297 LWSF---VSKDSIKWELSAINQ 315
>gi|153829224|ref|ZP_01981891.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|148875262|gb|EDL73397.1| conserved hypothetical protein [Vibrio cholerae 623-39]
Length = 95
Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 44/109 (40%), Gaps = 15/109 (13%)
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRI 180
++ I + V +++D + + + + + V D +I+ A + N ++++
Sbjct: 1 NQLETIREYVSPSLFEDLKAERANYEGD----QHTDVMYVDAEIVRADYDANRAQLSLQF 56
Query: 181 VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTK 229
G++ A + E D+W R++ N W+++ +
Sbjct: 57 SGRYRDA--------VEGIEENIE---DVWHLERDLTVPNAPWLIVGIQ 94
>gi|328872019|gb|EGG20389.1| hypothetical protein DFA_07513 [Dictyostelium fasciculatum]
Length = 310
Score = 56.5 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/220 (11%), Positives = 66/220 (30%), Gaps = 18/220 (8%)
Query: 28 RGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKV 87
V+ +K G + + + + +T +D+I + + +
Sbjct: 91 YTVMRQKVGRTMKPNIYIQSPGQIFEPNLPVPLTKILVTPSSWIDTIRFYYRTYGSIGVI 150
Query: 88 MRDIVS-VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFND----SL 142
+ + F K F+ +A+ + + + +++L Y
Sbjct: 151 KSKLKALTQDQFAVKSFVEQAKEIFINLNKAIANSDTDEVKELATIHYYSILAKNTQFDK 210
Query: 143 STRKSNEKNVKSSL---------VGIDDMKIINASIEENTVYITIRIVGQFISASYDKDN 193
K N + + + ++ A E I + G+ D
Sbjct: 211 VDGKKNNVKSEWTCELDKPKMLWIRAGQIRTTAAGGMEYFGQICVEFSGKQSLTRTDTKK 270
Query: 194 LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL---ISTKL 230
+I S + + D++ F R + +W + + T+
Sbjct: 271 NIIISQVKDA-EFKDVYVFERCLSSLPSSWRVCQTVDTQQ 309
>gi|307703104|ref|ZP_07640051.1| hypothetical protein SMSK23_0938 [Streptococcus oralis ATCC 35037]
gi|307623497|gb|EFO02487.1| hypothetical protein SMSK23_0938 [Streptococcus oralis ATCC 35037]
Length = 234
Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 47/135 (34%), Gaps = 2/135 (1%)
Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
+ + +FD F++ + Y + ++ E +++ L + +Y + L
Sbjct: 42 AISRVKYGDPNFDANAFISWVKEVYLKLQVAWTEKNWNSVRALESTSLYSQHSTQLEDHI 101
Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS--ASYDKDNLLISSDPEIFG 204
+ V I++++I + + I+ + D+ +I DP+
Sbjct: 102 RAKTTNVLEKVCIENVRIKEFIENPDGNDTLVVILSSTLRDYVIDDETRRVIEGDPKKDL 161
Query: 205 KVIDIWTFVRNIPPS 219
+ F+R
Sbjct: 162 FTVYQLNFIRQHGSQ 176
>gi|293364855|ref|ZP_06611572.1| hypothetical protein HMPREF8579_0701 [Streptococcus oralis ATCC
35037]
gi|291316305|gb|EFE56741.1| hypothetical protein HMPREF8579_0701 [Streptococcus oralis ATCC
35037]
Length = 318
Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 47/135 (34%), Gaps = 2/135 (1%)
Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
+ + +FD F++ + Y + ++ E +++ L + +Y + L
Sbjct: 126 AISRVKYGDPNFDANAFISWVKEVYLKLQVAWTEKNWNSVRALESTSLYSQHSTQLEDHI 185
Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS--ASYDKDNLLISSDPEIFG 204
+ V I++++I + + I+ + D+ +I DP+
Sbjct: 186 RAKTTNVLEKVCIENVRIKEFIENPDGNDTLVVILSSTLRDYVIDDETRRVIEGDPKKDL 245
Query: 205 KVIDIWTFVRNIPPS 219
+ F+R
Sbjct: 246 FTVYQLNFIRQHGSQ 260
>gi|330898717|gb|EGH30136.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
syringae pv. japonica str. M301072PT]
Length = 155
Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/168 (10%), Positives = 54/168 (32%), Gaps = 15/168 (8%)
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
+ + G+ +++ F+ + FL+ AR ++++ + +
Sbjct: 1 AAPPYQRETSQPAQNPIFGSSSPASAAPVINAPAWFNEQRFLDAARGHFQSLQQHWDANE 60
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
+ I + V ++ Q R +S+ + +++ + T+ G
Sbjct: 61 MDKIAEFVTPQMLQFLK---KERADLGDGFQSTYIENLQVQLDGVDDRADKTIATLTFSG 117
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
++ +D + + W R + P W++ +
Sbjct: 118 VSKTSRFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 153
>gi|306828965|ref|ZP_07462157.1| NinF protein [Streptococcus mitis ATCC 6249]
gi|304429143|gb|EFM32231.1| NinF protein [Streptococcus mitis ATCC 6249]
Length = 238
Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 47/135 (34%), Gaps = 2/135 (1%)
Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
+ + +FD F++ + Y + ++ E +++ L + +Y + L
Sbjct: 46 AISRVKYGDPNFDANAFISWVKEVYLKLQVAWTEKNWNSVRALESTSLYSQHSTQLEDHI 105
Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS--ASYDKDNLLISSDPEIFG 204
+ V I++++I + + I+ + D+ +I DP+
Sbjct: 106 RAKTTNVLEKVCIENVRIKEFIENPDGNDTLVVILSSTLRDYVIDDETRRVIEGDPKKDL 165
Query: 205 KVIDIWTFVRNIPPS 219
+ F+R
Sbjct: 166 FTVYQLNFIRQHGSQ 180
>gi|189184596|ref|YP_001938381.1| hypothetical protein OTT_1689 [Orientia tsutsugamushi str. Ikeda]
gi|189181367|dbj|BAG41147.1| hypothetical protein OTT_1689 [Orientia tsutsugamushi str. Ikeda]
Length = 211
Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/216 (15%), Positives = 66/216 (30%), Gaps = 36/216 (16%)
Query: 26 QLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN----------LDSIN 75
+L VLG E+ F + + T +
Sbjct: 21 KLIAVLGSVDEAERQKHKSFKSYFGEHYNLKDVTNTNVAESSSTRLSCNQDLNYFKQNNL 80
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
+ + + + S F+ F N A N + I+++ I L+D R
Sbjct: 81 VVDEATDYIITELIKLKSKVPSFNINRFYNTAINVIKMIIEAVQNANYKTIFSLLDKRFV 140
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
F ++ + K + +D + +++ + I+I +
Sbjct: 141 DQF---------HQISSKYVNIHVDSINFKLSNLNSLGNNVFIKIRIE------------ 179
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
I + K+ + WTF +NI P W L + +
Sbjct: 180 IDGN-----KLKEEWTFSKNITTPGPQWYLSNIEEV 210
>gi|315612608|ref|ZP_07887521.1| NinF protein [Streptococcus sanguinis ATCC 49296]
gi|315315589|gb|EFU63628.1| NinF protein [Streptococcus sanguinis ATCC 49296]
Length = 241
Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 48/136 (35%), Gaps = 2/136 (1%)
Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145
+ + + +FD + F + + Y + ++ E +++ L + +Y + L
Sbjct: 48 RAISLVKYGDPNFDAEAFTSWVKEVYLKLQVAWTEKNWNSVRALESTSLYSQHSAQLEDH 107
Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS--ASYDKDNLLISSDPEIF 203
+ V I++++I + + I+ + D+ +I DP+
Sbjct: 108 IRAKTTNVLEKVCIENVRIKEFIENPDGNDTLVVILSSILRDYVIDDETRRVIEGDPKKD 167
Query: 204 GKVIDIWTFVRNIPPS 219
+ F+R
Sbjct: 168 LFTVYQLNFIRQHGSQ 183
>gi|84998204|ref|XP_953823.1| mitochondrial inner membrane subunit [Theileria annulata]
gi|65304820|emb|CAI73145.1| mitochondrial inner membrane subunit, putative [Theileria annulata]
Length = 395
Score = 55.7 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 52/134 (38%), Gaps = 2/134 (1%)
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLV 130
+ I T L +R++ + F+ D + + +V+S+ +G A++
Sbjct: 214 NPIISKLFGDTSLASALREMKRLDPSFNLPDLVELVEHVIAPHVVESYLKGDGEALKLHC 273
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASI-EENTVYITIRIVGQFISASY 189
+ N S+ R + + S++ + ++++ +E ++ Q I+
Sbjct: 274 GEVAFNILNTSIKERNLQKLVLDPSILILKNVELKGGMKVKEGDPWLIFNFTTQQINCLR 333
Query: 190 DKDNLLISSDPEIF 203
D + + + ++
Sbjct: 334 DTKGKVCAGNCDVI 347
>gi|309799759|ref|ZP_07693972.1| putative transporter [Streptococcus infantis SK1302]
gi|308116608|gb|EFO54071.1| putative transporter [Streptococcus infantis SK1302]
Length = 305
Score = 55.7 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 47/138 (34%), Gaps = 2/138 (1%)
Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
+ + +FD F + + Y + ++ + + + L + +Y + L
Sbjct: 113 AVSRVKHGDPNFDADTFASWVKEVYIQLQAAWTKKDWNLVRSLESTSLYSQHSTQLEDHI 172
Query: 147 SNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFIS--ASYDKDNLLISSDPEIFG 204
+ V +++++I + + + I+ + D+ +I DP+
Sbjct: 173 RAKTTNVLEKVYVENIRIKDFYENPDGNDTLVVILSSTLRDYIIEDQSKRVIEGDPQEDL 232
Query: 205 KVIDIWTFVRNIPPSNPN 222
+ F+R N
Sbjct: 233 FTVYQMNFIRKHGSQTEN 250
>gi|308460507|ref|XP_003092557.1| hypothetical protein CRE_26805 [Caenorhabditis remanei]
gi|308253077|gb|EFO97029.1| hypothetical protein CRE_26805 [Caenorhabditis remanei]
Length = 361
Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 7/139 (5%)
Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151
+ FD K F +A + Y + + + + + +
Sbjct: 167 KQGFEKFDVKTFCAKAEDIYVRAHKALEARDKKEMYRCITEYAFAKMWPDVENGSVR--F 224
Query: 152 VKSSLVGIDDMKIINASIEEN-----TVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
+V + + IT+R+ + A YD+ LI V
Sbjct: 225 ELVEVVEPSRVVAVRCFDNPPKSGNDIAQITVRMHTKQKLAVYDRFGGLILGSENEEKDV 284
Query: 207 IDIWTFVRNIPPSNPNWVL 225
++ F +I + W L
Sbjct: 285 VEYVVFENHIAVVDGEWRL 303
>gi|328859204|gb|EGG08314.1| hypothetical protein MELLADRAFT_47868 [Melampsora larici-populina
98AG31]
Length = 497
Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 50/154 (32%), Gaps = 8/154 (5%)
Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
T KV+R I + DF+ FL + R IVD++ + + ++ Y
Sbjct: 334 TETAKVVRLIKEIDRDFEFDGFLRDLREYIVPEIVDAYVDADLKVLKLWTSEGAYNVITA 393
Query: 141 SLSTRKSNEKNVKSSLVGID--DMKIINASIEENTVYITIRIVGQFISASYDK-DNLLIS 197
+ T ++ ++ + D+ E I I+ + + +
Sbjct: 394 PMQTYLQRGLRPENQVIDLKGIDIMSAKVLQERELPVFVIAFRTHEINCFTNPGNGKVEV 453
Query: 198 SDPEIFGKVIDIWTFVRNI----PPSNPNWVLIS 227
+P+ +V + R W +I
Sbjct: 454 GNPDQIEQVQYVIVMTREAEQCGNEITGGWKVID 487
>gi|115534069|ref|NP_497347.3| hypothetical protein Y119D3B.16 [Caenorhabditis elegans]
gi|97537043|sp|Q95Y71|RM45_CAEEL RecName: Full=Probable 39S ribosomal protein L45, mitochondrial;
Flags: Precursor
gi|78771770|gb|AAK29715.4| Hypothetical protein Y119D3B.16 [Caenorhabditis elegans]
Length = 357
Score = 54.9 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 7/139 (5%)
Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN 151
+ FD K F +A + Y + + A+ K + + +
Sbjct: 165 KQGFEKFDIKTFCAKAEDIYVQAHRALEQRDKTAMYKYITEYAFAKMWPDVENGSVR--F 222
Query: 152 VKSSLVGIDDMKIINASIEEN-----TVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
S++ + + IT+R+ + A YD+ L+ + V
Sbjct: 223 ELISVLEPSRVVAVRCFDNPPKSGNDIAQITVRMHTRQKLAVYDRFGGLLLGSEDEEKDV 282
Query: 207 IDIWTFVRNIPPSNPNWVL 225
++ F +I + W L
Sbjct: 283 VEYVVFENHIAVVDGEWRL 301
>gi|323698095|ref|ZP_08110007.1| hypothetical protein DND132_0677 [Desulfovibrio sp. ND132]
gi|323458027|gb|EGB13892.1| hypothetical protein DND132_0677 [Desulfovibrio desulfuricans
ND132]
Length = 282
Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/203 (11%), Positives = 52/203 (25%), Gaps = 21/203 (10%)
Query: 32 GKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL--DSINELFPIGTRLNKVMR 89
G + G+ + S + + R + ++ ++ P T
Sbjct: 98 GDEDGSGETRPDVRSDDGTAQRPEARTMDRHEAARRTWDMLGSREPGQRPEPTTPTGTPT 157
Query: 90 DIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNE 149
FD +FL A+ + + + + + VY D + R
Sbjct: 158 GSSLRADGFDEAEFLEGAKVLFSRFQQARDKEDYDDLRDFLSDGVYSD-AVAAGERPR-- 214
Query: 150 KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDI 209
+ V + + + ++ Q + + +
Sbjct: 215 -----TEVMLVSALLTELHSDNGRTTASVHYDAQLRV-----------GEEGRPVRYRAV 258
Query: 210 WTFVRNIPPSNPNWVLISTKLGE 232
W F R+ WVL +
Sbjct: 259 WEFDRDDTTPGGLWVLERINSID 281
>gi|148284459|ref|YP_001248549.1| hypothetical protein OTBS_0806 [Orientia tsutsugamushi str.
Boryong]
gi|146739898|emb|CAM79872.1| hypothetical protein OTBS_0806 [Orientia tsutsugamushi str.
Boryong]
Length = 211
Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 33/216 (15%), Positives = 68/216 (31%), Gaps = 36/216 (16%)
Query: 26 QLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN----------LDSIN 75
+L VLG E+ F + + T +
Sbjct: 21 KLIAVLGSVDEAERQKHKSFKSYFGEPYNLKDVTNTNVVESSSIRLSCNQDLNYFKQNNL 80
Query: 76 ELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVY 135
+ + + + S F+ F N A N + I+++ I L+D R
Sbjct: 81 VVDEAADYIITELIKLKSKVPSFNINRFYNTAINVIKMIIEAVQNVDYKTIFSLLDKRFV 140
Query: 136 QDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
F ++ + K + + ++ + +++ I I+I +
Sbjct: 141 DQF---------HQMSSKYANIHVNSINFKLSNLNSLGNNIFIKIRIE------------ 179
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
I+ + K+ + WTF +NI P W L + +
Sbjct: 180 INGN-----KLKEEWTFSKNITTPGPQWYLSNIEEV 210
>gi|67607228|ref|XP_666797.1| mitochondrial import inner membrane translocase [Cryptosporidium
hominis TU502]
gi|54657855|gb|EAL36565.1| mitochondrial import inner membrane translocase [Cryptosporidium
hominis]
Length = 424
Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 18/141 (12%), Positives = 53/141 (37%), Gaps = 13/141 (9%)
Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
G +++KV++++ ++ +F DF++ ++S+ + H + Y+
Sbjct: 251 GNKISKVVKEMKAINPNFKLTDFMSFFEEYILPKFMESYLKCDEHKLRLHCGDVAYRQLC 310
Query: 140 DSLSTRKSNEKNVKSSLVGIDDMK------------IINASIEENTVYITIRIVGQFISA 187
++ K + + ++ + D++ + I+ N Q I+
Sbjct: 311 SNIKKLKKMGLCLNTKILQLGDVELIGAEISDLMFSFKDCKIQANQPEFMFTFKTQQINY 370
Query: 188 SYDKDNLLISSDPEIFGKVID 208
D + +IS + ++
Sbjct: 371 LKDSNGRIISGSIDDIKELQY 391
>gi|254518212|ref|ZP_05130268.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
gi|226911961|gb|EEH97162.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
Length = 266
Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/150 (11%), Positives = 55/150 (36%), Gaps = 7/150 (4%)
Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145
++++ + ++D + N+ ++ + ++ E ++ + ++Y
Sbjct: 103 SAIKNLSKMDYNWDYDNIKNDIEEAFYKVQVAWMERNQDLAKEYMSEKLYIRHRSKTEWM 162
Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVY--ITIRIVGQFISAS-YDKDNLLISSDPEI 202
K ++ + + I ++ T + + I + I + ++ N +I +
Sbjct: 163 KVRKEKNILEKIKLVSAIPIALQDKDGTNEDSLWVHIKAKSIDYTIKEETNEIIEGNKYR 222
Query: 203 FGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ W F++N WVL + +
Sbjct: 223 ITHFEEYWKFIKNEK----RWVLDEIRQID 248
>gi|156839125|ref|XP_001643257.1| hypothetical protein Kpol_1063p9 [Vanderwaltozyma polyspora DSM
70294]
gi|156113859|gb|EDO15399.1| hypothetical protein Kpol_1063p9 [Vanderwaltozyma polyspora DSM
70294]
Length = 417
Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 50/156 (32%), Gaps = 8/156 (5%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARN-SYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138
T ++V+ + F F R +++++ +G ++K Y +
Sbjct: 252 AETESSRVLSQFKLMDPTFSNDSFTKHLREYIIPEVLEAYVKGDEAVLKKWFSEAPYNVY 311
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFISASYD-KDNLL 195
+ + ++ I ++I++A ++ + + Q I K +
Sbjct: 312 AAQQKEFRKQQLFPDGRILDIRGVEIVSAKLLAPQDIPVLVVGCRAQEIHLYRKVKTGEI 371
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLIS 227
+ D F R+ + + W ++
Sbjct: 372 AAGDESNILMSSYAMVFTRDPEQIDDDETEGWKILE 407
>gi|66359344|ref|XP_626850.1| possible mitochondrial import inner membrane, translocase subunit
TIM44 [Cryptosporidium parvum Iowa II]
gi|46228138|gb|EAK89037.1| possible mitochondrial import inner membrane, translocase subunit
TIM44 [Cryptosporidium parvum Iowa II]
Length = 424
Score = 54.6 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/141 (12%), Positives = 53/141 (37%), Gaps = 13/141 (9%)
Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
G +++KV++++ ++ +F DF++ ++S+ + H + Y+
Sbjct: 251 GNKISKVVKEMKAINPNFKLTDFMSFFEEYILPKFMESYLKCDEHKLRLHCGDVAYRQLC 310
Query: 140 DSLSTRKSNEKNVKSSLVGIDDMK------------IINASIEENTVYITIRIVGQFISA 187
++ K + + ++ + +++ + I+ N Q I+
Sbjct: 311 SNIEKLKKMGLCLNTKILQLGNVELIGAEISDLMFSFKDCKIQTNQPEFMFTFKTQQINC 370
Query: 188 SYDKDNLLISSDPEIFGKVID 208
D + +IS + ++
Sbjct: 371 LQDSNGRIISGSIDDIKELQY 391
>gi|6322167|ref|NP_012242.1| Tim44p [Saccharomyces cerevisiae S288c]
gi|400272|sp|Q01852|TIM44_YEAST RecName: Full=Mitochondrial import inner membrane translocase
subunit TIM44; AltName: Full=Inner membrane import site
protein 45; Short=ISP45; AltName: Full=Membrane import
machinery protein MIM44; AltName: Full=Mitochondrial
protein import protein 1; Flags: Precursor
gi|3967|emb|CAA47693.1| Mitochondrial Protein Import 1 protein [Saccharomyces cerevisiae]
gi|599977|emb|CAA86970.1| mitochondrial import protein [Saccharomyces cerevisiae]
gi|151943135|gb|EDN61470.1| translocase of the inner membrane [Saccharomyces cerevisiae YJM789]
gi|190406244|gb|EDV09511.1| hypothetical protein SCRG_05201 [Saccharomyces cerevisiae RM11-1a]
gi|207344275|gb|EDZ71473.1| YIL022Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272151|gb|EEU07150.1| Tim44p [Saccharomyces cerevisiae JAY291]
gi|285812624|tpg|DAA08523.1| TPA: Tim44p [Saccharomyces cerevisiae S288c]
gi|323333058|gb|EGA74459.1| Tim44p [Saccharomyces cerevisiae AWRI796]
gi|323354619|gb|EGA86455.1| Tim44p [Saccharomyces cerevisiae VL3]
Length = 431
Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/156 (12%), Positives = 52/156 (33%), Gaps = 8/156 (5%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138
T ++V + F + F R I++++ +G V ++K + +
Sbjct: 266 AETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVY 325
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFIS-ASYDKDNLL 195
K + ++ I ++I++A ++ + + Q I+ K +
Sbjct: 326 AAQQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEI 385
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLIS 227
+ D F R+ + + W ++
Sbjct: 386 AAGDEANILMSSYAMVFTRDPEQIDDDETEGWKILE 421
>gi|259147236|emb|CAY80489.1| Tim44p [Saccharomyces cerevisiae EC1118]
Length = 431
Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 8/156 (5%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138
T ++V + F + F R I++++ G V ++K + +
Sbjct: 266 AETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVRGDVKVLKKWFSEAPFNVY 325
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFIS-ASYDKDNLL 195
K + ++ I ++I++A ++ + + Q I+ K +
Sbjct: 326 AAQQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEI 385
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLIS 227
+ D F R+ + + W ++
Sbjct: 386 AAGDEANILMSSYAMVFTRDPEQIDDDETEGWKILE 421
>gi|328767960|gb|EGF78008.1| hypothetical protein BATDEDRAFT_91206 [Batrachochytrium
dendrobatidis JAM81]
Length = 264
Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/183 (15%), Positives = 66/183 (36%), Gaps = 12/183 (6%)
Query: 58 GIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS 117
+L K N + I E + + + + P+ F EA Y A+ +
Sbjct: 75 PPSSLPAPINKANWNIIWERIKKLVLATWSVYQVKTTTKGWKPRAFAIEAEKLYIAMNKA 134
Query: 118 FFEGKVHAIEKLVDSRVYQDFNDSLST--------RKSNEKNVKSSLVGIDDMKIINASI 169
+ G + V + + + SN + + +V + K+ +
Sbjct: 135 YARGDRAELSNCVTDGMMSALSPEIKAMQRIGKFVWDSNGSDRRPQVVHLATAKVATETG 194
Query: 170 EENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS--NPNWVLIS 227
+ IT+R+ + A+Y KD+ LI+ +P+ + +++ + + N W +
Sbjct: 195 DMRLSQITVRVNVRQSMATY-KDDTLIAGNPDTYTSIVEHIVMEKWLDGKWANRPWKIAG 253
Query: 228 -TK 229
+
Sbjct: 254 KIQ 256
>gi|289677454|ref|ZP_06498344.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
syringae pv. syringae FF5]
Length = 151
Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/163 (11%), Positives = 54/163 (33%), Gaps = 15/163 (9%)
Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
+ + G+ +++ F+ + FL+ AR ++++ + ++ I
Sbjct: 2 QRETSQPAQNPIFGSSSPASTAPVINAPAWFNEQRFLDAARGHFQSLQQHWDANEMDKIA 61
Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
+ V ++ Q R +S+ + +++ + T+ G ++
Sbjct: 62 EFVTPQMLQFLK---KERADLGDGFQSTYIENLQVQLDGVDDRADKTIATLTFSGVSKTS 118
Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+D + + W R + P W++ +
Sbjct: 119 RFD-QGEV----------FSESWNMERPQGDNQP-WLVAGIRQ 149
>gi|119580915|gb|EAW60511.1| mitochondrial ribosomal protein L45 [Homo sapiens]
Length = 135
Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Query: 138 FNDSLSTRKSNEKNVKSSLVG--IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL 195
+ + V+S + + IT+R+ + A YD+ L
Sbjct: 1 MTWDIKYKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRL 60
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPNWV 224
+ ++ V++ F + + +W
Sbjct: 61 MYGQEDVPKDVLEYVVFEKQLTNPYGSWR 89
>gi|323348152|gb|EGA82406.1| Tim44p [Saccharomyces cerevisiae Lalvin QA23]
Length = 431
Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 8/156 (5%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138
T ++V + F + F R I++++ G V ++K + +
Sbjct: 266 AETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVXGDVKVLKKWFSEAPFNVY 325
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFIS-ASYDKDNLL 195
K + ++ I ++I++A ++ + + Q I+ K +
Sbjct: 326 AAQQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEI 385
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLIS 227
+ D F R+ + + W ++
Sbjct: 386 AAGDEANILMSSYAMVFTRDPEQIDDDETEGWKILE 421
>gi|166033052|ref|ZP_02235881.1| hypothetical protein DORFOR_02774 [Dorea formicigenerans ATCC
27755]
gi|166027409|gb|EDR46166.1| hypothetical protein DORFOR_02774 [Dorea formicigenerans ATCC
27755]
Length = 183
Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 52/150 (34%), Gaps = 8/150 (5%)
Query: 86 KVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTR 145
+ M+ +++PK +++Y I + + EK + + Q++N L
Sbjct: 32 RSMKSFEKPGEEWNPKKMKKYVKHAYFVIQECWRRQDTSYAEKYLSKNLIQNWNSKLGWM 91
Query: 146 KSNEKNVKSSLVGIDDMKIINASIEE--NTVYITIRIVGQFISASYD-KDNLLISSDPEI 202
+ N + V + + A +E + I G+ I + ++
Sbjct: 92 EVNHEKPVQERVRFLNAAPVFAFDKEGEEHDRVIYLIHGRMIGYYINIDTGEVVRG-KTS 150
Query: 203 FGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+ W F+R + WVL + +
Sbjct: 151 PETFYEYWVFIR----EDGRWVLDEIRQKD 176
>gi|303246498|ref|ZP_07332777.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
gi|302492208|gb|EFL52083.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
Length = 267
Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/197 (14%), Positives = 55/197 (27%), Gaps = 26/197 (13%)
Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93
++G +P+ G KRD + D++ T +
Sbjct: 96 RSGPTEPYDGTPPPAPPRPKRD-------MYTNAQATWDALRSTPSSKTASQSAGQPSAG 148
Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK 153
D ++FL A+ +Y I+ + + + +SL
Sbjct: 149 ATPD---EEFLAGAKMAYGRILADIAKRDFDDLAGFTTPDFLANLKNSLPL-----SPPP 200
Query: 154 SSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFV 213
+ V + + + G D L+ D D W FV
Sbjct: 201 APDVLLVEATLAEHRE-----------QGSQTVMVVDYKVLIHEKDAPHNTDRFDRWRFV 249
Query: 214 RNIPPSNPNWVLISTKL 230
R+ NW+L + +
Sbjct: 250 RDNATPGANWLLDAMEQ 266
>gi|50290757|ref|XP_447811.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527122|emb|CAG60760.1| unnamed protein product [Candida glabrata]
Length = 412
Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 8/156 (5%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138
T +V + V F F R+ +++++ +G ++K + +
Sbjct: 247 AETESARVYKQFKMVDPTFTNIGFTKHLRDYIVPEVLEAYVKGDEKVLKKWFSEAPFNVY 306
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFIS-ASYDKDNLL 195
N K E ++ I +++++A ++ + + Q I K +
Sbjct: 307 NAQQKIFKKQELFSDGKILDIRGVEVVSAKLLQPQDIPVLVVGCRAQEIHLYRKAKTGEI 366
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLIS 227
+ D F R+ + + W ++
Sbjct: 367 AAGDESNILMSSYAMVFTRDPEQIDDDETEGWKILE 402
>gi|126030489|pdb|2FXT|A Chain A, Crystal Structure Of Yeast Tim44
Length = 192
Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/156 (12%), Positives = 52/156 (33%), Gaps = 8/156 (5%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138
T ++V + F + F R I++++ +G V ++K + +
Sbjct: 33 AETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVY 92
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFIS-ASYDKDNLL 195
K + ++ I ++I++A ++ + + Q I+ K +
Sbjct: 93 AAQQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEI 152
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLIS 227
+ D F R+ + + W ++
Sbjct: 153 AAGDEANILMSSYAMVFTRDPEQIDDDETEGWKILE 188
>gi|325534055|pdb|3QK9|A Chain A, Yeast Tim44 C-Terminal Domain Complexed With Cymal-3
gi|325534056|pdb|3QK9|B Chain B, Yeast Tim44 C-Terminal Domain Complexed With Cymal-3
Length = 222
Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/156 (12%), Positives = 52/156 (33%), Gaps = 8/156 (5%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138
T ++V + F + F R I++++ +G V ++K + +
Sbjct: 57 AETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVY 116
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFIS-ASYDKDNLL 195
K + ++ I ++I++A ++ + + Q I+ K +
Sbjct: 117 AAQQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEI 176
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLIS 227
+ D F R+ + + W ++
Sbjct: 177 AAGDEANILMSSYAMVFTRDPEQIDDDETEGWKILE 212
>gi|310821532|ref|YP_003953890.1| hypothetical protein STAUR_4283 [Stigmatella aurantiaca DW4/3-1]
gi|309394604|gb|ADO72063.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 637
Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 57/163 (34%), Gaps = 4/163 (2%)
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
T + + ++ + + ++ + F+ + L + R+ + + +++F
Sbjct: 93 PTGSTQRALERKEAEQRTQVSDQSVQEWVQALKRKDPQFEVQGVLAKVRHLFPLLQEAWF 152
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
+ ++ + + YQ FN L + + + D +II S E + IR
Sbjct: 153 KRELTPVRPFLSDATYQRFNVQLQLMAAQGVRDAICDIRLLDARIIGLSQSEWFDSLQIR 212
Query: 180 IVGQFISA----SYDKDNLLISSDPEIFGKVIDIWTFVRNIPP 218
I + L ++ ++WTFVR
Sbjct: 213 IQAEMRDTDVPADASDAQALAAAQRAPLESFTEVWTFVRKPGA 255
>gi|255714799|ref|XP_002553681.1| KLTH0E04554p [Lachancea thermotolerans]
gi|238935063|emb|CAR23244.1| KLTH0E04554p [Lachancea thermotolerans]
Length = 479
Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/156 (12%), Positives = 52/156 (33%), Gaps = 8/156 (5%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARN-SYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138
T +VM + +F+ + FL+ R +++++ +G+ +++ Y +
Sbjct: 314 AETESARVMGQFKMMDGNFNSESFLSHLREYIIPEVLEAYVKGEEQVLKQWFSEAPYNVY 373
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFISASYD-KDNLL 195
+ ++ I + I++A ++ + + Q I D K +
Sbjct: 374 AAQQKVFREQGLFADGRILDIRGVDIVSAKLLPPQDLPVLVVGCRAQEIHLYRDVKTGEV 433
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLIS 227
+ F R+ + W ++
Sbjct: 434 AAGTQSNILMSSYAMVFTRDPENIDDKETEGWKILE 469
>gi|50418853|ref|XP_457947.1| DEHA2C05962p [Debaryomyces hansenii CBS767]
gi|49653613|emb|CAG86003.1| DEHA2C05962p [Debaryomyces hansenii]
Length = 428
Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/156 (12%), Positives = 42/156 (26%), Gaps = 8/156 (5%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138
T KV++ + F DF N ++DS+ + ++ + +
Sbjct: 263 AETEQAKVIKQFKQMDPAFRVTDFTKTLTNYIVPELLDSYIKNDEKVLKHWFSEAPFNVW 322
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFIS-ASYDKDNLL 195
+ ++ I + I+ + I + Q I K +
Sbjct: 323 QANNKQFIQQGLFSDGKILDIRGVDIVTCKSLQPNDIPVIVVSCRAQEIHLYRKAKTGEI 382
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLIS 227
+ + F R + W +I
Sbjct: 383 AAGTEDHIQLSTYAMVFTRIPEEFDNTVTEGWKVIE 418
>gi|50307591|ref|XP_453775.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642909|emb|CAH00871.1| KLLA0D16214p [Kluyveromyces lactis]
Length = 418
Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/156 (12%), Positives = 49/156 (31%), Gaps = 8/156 (5%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARN-SYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138
T +V + F+ +DF R I++++ +G +++ Y +
Sbjct: 253 AETESARVYGQFKMMDPTFNTEDFTKHLREYIIPEILEAYVKGDEAVLKQWFSEAPYNVY 312
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFIS-ASYDKDNLL 195
+ E ++ I ++I++A ++ + + Q I K +
Sbjct: 313 AAQQKQFREQELFADGKILDIRGVEIVSAKLLPPQDIPVLVVGCRAQEIHLYRKAKTGEI 372
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLIS 227
+ F R+ + W ++
Sbjct: 373 AAGAESSILMSSYAMVFTRDPETVDDKETEGWKILE 408
>gi|33146500|dbj|BAC79609.1| hypothetical protein [Oryza sativa Japonica Group]
gi|50510250|dbj|BAD31456.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 353
Score = 51.9 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/126 (16%), Positives = 51/126 (40%), Gaps = 11/126 (8%)
Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
+ K+F ++A Y+ + G ++ K++ R++ + L R+S +V L
Sbjct: 207 GYTKKEFYDQAFKIYKEVNTLMAHGDTSSLRKILTERMHSTIKNELKKRQSMWSSVHWEL 266
Query: 157 VGI---------DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
V + + +++ + +T+ V + +Y+ ++S D +
Sbjct: 267 VEPAVCIRTLRARMIGLDKNDLDKAFIQLTLEFVTKQKFEAYNTKGEVVSGDKSKELII- 325
Query: 208 DIWTFV 213
+WT V
Sbjct: 326 -VWTLV 330
>gi|146412672|ref|XP_001482307.1| hypothetical protein PGUG_05327 [Meyerozyma guilliermondii ATCC
6260]
gi|146393071|gb|EDK41229.1| hypothetical protein PGUG_05327 [Meyerozyma guilliermondii ATCC
6260]
Length = 420
Score = 51.5 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 15/139 (10%), Positives = 41/139 (29%), Gaps = 4/139 (2%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138
T KV++ + + F DF N ++D++ + +++ + + +
Sbjct: 255 AETEQAKVIKQLRQIDPSFRITDFTRTLTNYIVPELLDAYIKNDDKVLKQWLSEAPFNVW 314
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASI--EENTVYITIRIVGQFISASYD-KDNLL 195
+ ++ I + I+ + + + Q I K +
Sbjct: 315 QANNKQFVQQGLFSDGRILDIRGVDIVTCKMLQPNEIPVVVVSCRAQEIHLFRKAKTGEV 374
Query: 196 ISSDPEIFGKVIDIWTFVR 214
+ + F R
Sbjct: 375 AAGTEDHIQLSTYAMVFTR 393
>gi|52842829|ref|YP_096628.1| transmembrane protein [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|52629940|gb|AAU28681.1| transmembrane protein [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
Length = 270
Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/231 (13%), Positives = 68/231 (29%), Gaps = 46/231 (19%)
Query: 2 VFIKMD--SGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59
+F+ +G L+ + FF+ LR + G + SG F G
Sbjct: 79 LFMGNGLANGLITWLILGSVIFFIISFLRRKMNP--GFQATQSGAFRQNSFEQFTQNYGN 136
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
G T FD +FL +A+ ++ + ++
Sbjct: 137 RNSGGA------------------------HFAQQETSFDADNFLRDAKITFIRLQAAYD 172
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
+ + ++ V F + + V D K+++ S + ++ +++
Sbjct: 173 QKNLQDLQTFTVPEV---FAEIKMQLDERGDAPNQTEVISLDAKLLDVSKQSLSMIASVQ 229
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ + + +IW F R WV+ +
Sbjct: 230 F-----------TGTIKENGE--ISNLDEIWHF-RQFDNRK-EWVVGGIQQ 265
>gi|149447446|ref|XP_001520768.1| PREDICTED: similar to mitochondrial ribosomal protein L45, partial
[Ornithorhynchus anatinus]
Length = 94
Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/67 (14%), Positives = 23/67 (34%)
Query: 159 IDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPP 218
+ S +T+R+ + A YD+ L+ ++ V++ + +
Sbjct: 11 VQVRCTDMVSPGNVYGQVTVRMHTRQALALYDRFGRLMYGREDLPRDVLEYVVLEKQLRN 70
Query: 219 SNPNWVL 225
W L
Sbjct: 71 PYGAWRL 77
>gi|193848536|gb|ACF22724.1| mitochondrial inner membrane protein [Brachypodium distachyon]
Length = 226
Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/105 (13%), Positives = 41/105 (39%), Gaps = 4/105 (3%)
Query: 98 FDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLV 157
F DF+ + + + ++ ++ +G ++K + + S+ ++ ++
Sbjct: 113 FSLPDFVADIEEAIKPVLIAYSKGDTEMLKKYCNKEFIERCEGERQAYASHNLFFRNKVL 172
Query: 158 GIDDMKIINASIEENTVYITIR----IVGQFISASYDKDNLLISS 198
I + +I A + +T I + Q I +++D +
Sbjct: 173 HISEPHVIEAKMLGSTPLIILGVNAPFQTQQIHCVHNRDGQITHG 217
>gi|168056436|ref|XP_001780226.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668376|gb|EDQ54985.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 418
Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 9/107 (8%)
Query: 108 RNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMK---- 163
+N I ++ G A+ +LV V L R+ V LVG
Sbjct: 224 QNIQGMINNALAAGDRTALRQLVTDNVLTAMKKELKHRELAWARVHWELVGPLKSIRTLQ 283
Query: 164 -----IINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGK 205
I +++ +T+RIV A+YDK L++ DPE +
Sbjct: 284 GRLIGIDQKNMDTAFAQLTLRIVSTQRFAAYDKQGKLVAGDPEKEVE 330
>gi|193211982|ref|YP_001997935.1| hypothetical protein Cpar_0309 [Chlorobaculum parvum NCIB 8327]
gi|193085459|gb|ACF10735.1| hypothetical protein Cpar_0309 [Chlorobaculum parvum NCIB 8327]
Length = 490
Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 4/162 (2%)
Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDI--VSVYTDFDPKDFLNEARNSYEAIVDSF 118
+ K +KK N ++ E P T ++ FD FL + R ++ + ++
Sbjct: 91 VVAKFRKKSNENAFGEPVPEATPDARIDNTPLFPGAPPGFDQSAFLAKVRKAFLEVQRAW 150
Query: 119 FEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI 178
+ + + VYQ FN + ++ S + I + + +
Sbjct: 151 SAQSTDMMRRFISDGVYQRFNTQFKMMRLLQQGNPLSNINISMAWVDRIEQDGRYDIVHA 210
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSN 220
I N D E + ++ W+F+R +
Sbjct: 211 GIKASMTDRFICALNH--DLDEEGTNEFVEYWSFIRKRGAAG 250
>gi|260950873|ref|XP_002619733.1| hypothetical protein CLUG_00892 [Clavispora lusitaniae ATCC 42720]
gi|238847305|gb|EEQ36769.1| hypothetical protein CLUG_00892 [Clavispora lusitaniae ATCC 42720]
Length = 417
Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 41/139 (29%), Gaps = 4/139 (2%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138
T KV++ + F DF N ++D++ + +++ + + +
Sbjct: 252 SETEQAKVIKQFKLMDPTFRVTDFTRTLTNYIVPELLDAYIKNDEAVLKQWLSEAPFNVW 311
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFISASYD-KDNLL 195
+ S ++ I + I+ + I + Q I K +
Sbjct: 312 QANNKQFVQQGLFSDSKILDIRGVDIVTCKSLQPNDVPVIVVSCRAQEIHLFRKAKTGEI 371
Query: 196 ISSDPEIFGKVIDIWTFVR 214
+ + F R
Sbjct: 372 AAGTEDHIQMSTYAMVFTR 390
>gi|226942212|ref|YP_002797285.1| Tim44-like domain-containing protein [Azotobacter vinelandii DJ]
gi|226717139|gb|ACO76310.1| Tim44-like domain protein [Azotobacter vinelandii DJ]
Length = 284
Score = 49.2 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/231 (10%), Positives = 64/231 (27%), Gaps = 42/231 (18%)
Query: 2 VFIKMDS--GDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGI 59
+F+ L +L + F+ +L ++ ++ +G + +
Sbjct: 92 MFMGDGFDGIQLLDILILALIAFLVYRL--IVARRRKLHPAVAGHAPMQRETPAQPRP-- 147
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
R + F+ + FL AR + A+ +
Sbjct: 148 ---------------------AATGAAQRRAPIQAPAWFNEQRFLEAARQHFTALQQHWD 186
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
++ I + V ++ R +S+ + +++ + T+
Sbjct: 187 ANELDKIAEFVTPQM---LEFIRKERAELGDGFQSTYIDNLQVQLDGVDDLADKTVATLT 243
Query: 180 IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
G S+ + E + W R + P W++ +
Sbjct: 244 FSGVSKSSRF-----------EQGETFSESWRMERRQGENQP-WLIAGIRQ 282
>gi|182625334|ref|ZP_02953108.1| conserved hypothetical protein [Clostridium perfringens D str.
JGS1721]
gi|177909492|gb|EDT71939.1| conserved hypothetical protein [Clostridium perfringens D str.
JGS1721]
Length = 261
Score = 49.2 bits (115), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 49/136 (36%), Gaps = 3/136 (2%)
Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
++D ++ + + S+ I +++ ++ L+ + +
Sbjct: 100 EAMSTLKDFEIENPAWNFYEIETQIEESFPLIQEAWMNRDYSPVKHLMTDNFFDTHTVKM 159
Query: 143 STRKSNEKNVKSSLVGIDDMKIINA--SIEENTVYITIRIVGQFISASYDKDNL-LISSD 199
+ ++ S V + + I A + E +I + + + I + +++N +I D
Sbjct: 160 NWMLLKKEKNILSDVELKKVTPILAVENDENGEDFIWVLLRAKMIDYTINEENNCIIDGD 219
Query: 200 PEIFGKVIDIWTFVRN 215
+ W F+R
Sbjct: 220 YSTANSFEEFWKFIRK 235
>gi|254707405|ref|ZP_05169233.1| calcium-binding EF-hand [Brucella pinnipedialis M163/99/10]
Length = 29
Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 204 GKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
++ D+WTF R+ +PNW L++T+ +
Sbjct: 1 VEIKDLWTFARDTNSRDPNWKLVATEAED 29
>gi|324523301|gb|ADY48225.1| 39S ribosomal protein L45 [Ascaris suum]
Length = 171
Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 1/93 (1%)
Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
+++ D + + E+ S +V I + +T+R+ A YDK
Sbjct: 19 KMWPDVENGSVVWEMVEQKEPSRVVAIRCSD-SPYKSGNDIAQLTVRMHTVQKLAIYDKF 77
Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVL 225
LI V++ F +I + W L
Sbjct: 78 GRLILGSEVEPKAVVEYVVFENHIASLDGAWRL 110
>gi|45187755|ref|NP_983978.1| ADL118Cp [Ashbya gossypii ATCC 10895]
gi|44982516|gb|AAS51802.1| ADL118Cp [Ashbya gossypii ATCC 10895]
Length = 418
Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/156 (10%), Positives = 48/156 (30%), Gaps = 8/156 (5%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARN-SYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138
T +V + F+ ++F R +++++ +G +++ Y +
Sbjct: 253 AETESARVFAQFKLLDPTFNTEEFTKHLREYIIPEVLEAYVKGDEQVLKQWFSEAPYNVY 312
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFISASYDKD-NLL 195
+ + E ++ I ++II+A ++ I + Q I +
Sbjct: 313 SAQQKQIRQQELFADGRILDIRGVEIISAKLLPPQDVPAIVVGCRAQEIHLFRKATTGEI 372
Query: 196 ISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLIS 227
+ R+ + W ++
Sbjct: 373 AAGHESNIMLSSYAMVLTRDPEKVDDKETEGWKILE 408
>gi|110800878|ref|YP_695686.1| hypothetical protein CPF_1240 [Clostridium perfringens ATCC 13124]
gi|110675525|gb|ABG84512.1| conserved hypothetical protein [Clostridium perfringens ATCC 13124]
Length = 256
Score = 48.8 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/151 (12%), Positives = 55/151 (36%), Gaps = 3/151 (1%)
Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
K+ S +++ ++D ++ + + S+ I +++ ++
Sbjct: 80 KNGSVSRYKVYSKKREAMSTLKDFEIENPAWNFYEIETQIEESFPIIQEAWMNRDYSPVK 139
Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA--SIEENTVYITIRIVGQFI 185
L+ + ++ ++ S V + + I A + E +I + + + I
Sbjct: 140 HLMTDNFFDTHTVKMNWMLLKKEKNILSDVELKKVTPILAVENDENGEDFIWVLLKAKMI 199
Query: 186 SASYDKDNL-LISSDPEIFGKVIDIWTFVRN 215
+ +++N +I D + W F+R
Sbjct: 200 DYTINEENNCIIDGDYSTANSFEEFWKFIRK 230
>gi|168215914|ref|ZP_02641539.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239]
gi|182381877|gb|EDT79356.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239]
Length = 258
Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/151 (12%), Positives = 55/151 (36%), Gaps = 3/151 (1%)
Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
K+ S +++ ++D ++ + + S+ I +++ ++
Sbjct: 82 KNGSVSRYKVYSKKREAMSTLKDFEIENPAWNFYEIETQIEESFPLIQEAWMNRDYSPVK 141
Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA--SIEENTVYITIRIVGQFI 185
L+ + ++ ++ S V + + I A + E +I + + + I
Sbjct: 142 HLMTDNFFDTHTVKMNWMLLKKEKNILSDVELKKVTPILAVENDENGEDFIWVLLKAKMI 201
Query: 186 SASYDKDNL-LISSDPEIFGKVIDIWTFVRN 215
+ +++N +I D + W F+R
Sbjct: 202 DYTINEENNCIIDGDYSTANSFEEFWKFIRK 232
>gi|168213921|ref|ZP_02639546.1| conserved hypothetical protein [Clostridium perfringens CPE str.
F4969]
gi|170714567|gb|EDT26749.1| conserved hypothetical protein [Clostridium perfringens CPE str.
F4969]
Length = 260
Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/151 (12%), Positives = 55/151 (36%), Gaps = 3/151 (1%)
Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
K+ S +++ ++D ++ + + S+ I +++ ++
Sbjct: 84 KNGSVSRYKVYSKKREAMSTLKDFEIENPAWNFYEIETQIEESFPLIQEAWMNRDYSPVK 143
Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA--SIEENTVYITIRIVGQFI 185
L+ + ++ ++ S V + + I A + E +I + + + I
Sbjct: 144 HLMTDNFFDTHTVKMNWMLLKKEKNILSDVELKRVTPILAVENDENGEDFIWVLLKAKMI 203
Query: 186 SASYDKDNL-LISSDPEIFGKVIDIWTFVRN 215
+ +++N +I D + W F+R
Sbjct: 204 DYTINEENNCIIDGDYSTANSFEEFWKFIRK 234
>gi|18309965|ref|NP_561899.1| hypothetical protein CPE0983 [Clostridium perfringens str. 13]
gi|18144643|dbj|BAB80689.1| hypothetical protein [Clostridium perfringens str. 13]
Length = 258
Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 49/136 (36%), Gaps = 3/136 (2%)
Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
++D ++ + + S+ I +++ ++ L+ + +
Sbjct: 97 EAMSTLKDFEIENPAWNFYEIETQIEESFPLIQEAWMNRDYSPVKHLMTDNFFDTHTVKM 156
Query: 143 STRKSNEKNVKSSLVGIDDMKIINA--SIEENTVYITIRIVGQFISASYDKDNL-LISSD 199
+ ++ S V + + I A + E +I + + + I + +++N +I D
Sbjct: 157 NWMLLKKEKNILSDVELKKVTPILAVENDENGEDFIWVLLKAKMIDYTINEENNCIIDGD 216
Query: 200 PEIFGKVIDIWTFVRN 215
+ W F+R
Sbjct: 217 YSTANSFEEFWKFIRK 232
>gi|168211797|ref|ZP_02637422.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC
3626]
gi|170710236|gb|EDT22418.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC
3626]
Length = 258
Score = 48.4 bits (113), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/151 (11%), Positives = 55/151 (36%), Gaps = 3/151 (1%)
Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
K+ S +++ +++ ++ + + S+ I +++ ++
Sbjct: 82 KNGSVSRYKVYSKKREAMSTLKNFEIENPAWNFYEIETQIEESFPLIQEAWMNRDYSPVK 141
Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINA--SIEENTVYITIRIVGQFI 185
L+ + ++ ++ S V + + I A + E +I + + + I
Sbjct: 142 HLMTDNFFDTHTVKMNWMLLKKEKNILSDVELKKVTPILAVENDENGEDFIWVLLKAKMI 201
Query: 186 SASYDKDNL-LISSDPEIFGKVIDIWTFVRN 215
+ +++N +I D + W F+R
Sbjct: 202 DYTINEENNCIIDGDYSTANSFEEFWKFIRK 232
>gi|15894044|ref|NP_347393.1| hypothetical protein CA_C0757 [Clostridium acetobutylicum ATCC 824]
gi|15023641|gb|AAK78733.1|AE007591_6 Predicted membrane protein [Clostridium acetobutylicum ATCC 824]
gi|325508171|gb|ADZ19807.1| membrane protein [Clostridium acetobutylicum EA 2018]
Length = 265
Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 16/152 (10%), Positives = 48/152 (31%), Gaps = 7/152 (4%)
Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDS 141
+ D+ +++ + + ++ I ++ E + + ++Y
Sbjct: 95 NESISAINDLSIDDNNWNYDEIKKDVEEAFYNIQKAWMERNQELAREYMSKKLYDKHKAE 154
Query: 142 LSTRKSNEKNVKSSLVGIDD--MKIINASIEENTVYITIRIVGQFISASYDK-DNLLISS 198
+ ++ V + + + + + I + I + ++ DN +I
Sbjct: 155 TESMIIKKEKNILDNVQLLEFYPVAVEDYEGTDKDSFWLYIKAKAIDYTINEEDNKVIEG 214
Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ + + W F+R WV K
Sbjct: 215 YQSVSVEFEEYWKFIREEKS----WVADEIKQ 242
>gi|150017726|ref|YP_001309980.1| hypothetical protein Cbei_2878 [Clostridium beijerinckii NCIMB
8052]
gi|149904191|gb|ABR35024.1| hypothetical protein Cbei_2878 [Clostridium beijerinckii NCIMB
8052]
Length = 289
Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 12/147 (8%), Positives = 41/147 (27%), Gaps = 7/147 (4%)
Query: 84 LNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLS 143
N+ + I + + + ++ +++S +K + + Y
Sbjct: 128 TNEFINTIKKDPKNISYAFLRSTVKEAFSKVIESLERMNFEMCQKYMSTEFYDGLQSQCK 187
Query: 144 TRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFI--SASYDK-DNLLISSDP 200
+ + + + ++ + V ++ D+ D ++ +
Sbjct: 188 RYSFENIGRIIEELEFIEAEPVGLIHHHDSYKDIVWFVIKYNAKDYVVDETDGEILFGN- 246
Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVLIS 227
+ W F + W+L
Sbjct: 247 NKVKEFEQYWKFQK---AEENTWLLSD 270
>gi|182626290|ref|ZP_02954046.1| putative membrane protein [Clostridium perfringens D str. JGS1721]
gi|177908388|gb|EDT70930.1| putative membrane protein [Clostridium perfringens D str. JGS1721]
Length = 273
Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 15/148 (10%), Positives = 47/148 (31%), Gaps = 12/148 (8%)
Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
++++ ++ + +++ +I ++ + + +E L+ + +Y L K
Sbjct: 103 KLKELALKDPYWNINYIKSVVEDTFYSIQYAWNDDEYERVESLLTTSLYNKHLKVLEELK 162
Query: 147 SNEKNVKSSLVGID----DMKIINASIEENTVYITIRIVGQFISASYDKDNL--LISSDP 200
S K + + + +++ + I + +I +
Sbjct: 163 SENKKNVLEDIQFNGCRIISLFEGDEKQWGFIWVEVNF--SMIDYIVNTKGKRRIIEGND 220
Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ W FV W+L +
Sbjct: 221 NYSRSDFEYWKFVYIEN----TWLLSNI 244
>gi|168206873|ref|ZP_02632878.1| conserved hypothetical protein [Clostridium perfringens E str.
JGS1987]
gi|169341151|ref|ZP_02863244.1| conserved hypothetical protein [Clostridium perfringens C str.
JGS1495]
gi|169299758|gb|EDS81810.1| conserved hypothetical protein [Clostridium perfringens C str.
JGS1495]
gi|170661690|gb|EDT14373.1| conserved hypothetical protein [Clostridium perfringens E str.
JGS1987]
Length = 259
Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 48/136 (35%), Gaps = 3/136 (2%)
Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
++D ++ + + S+ I +++ ++ L+ + +
Sbjct: 98 EAMSTLKDFEIENPAWNFYEIETQIEESFPLIQEAWMNRDYSPVKHLMTDNFFDTHTVKM 157
Query: 143 STRKSNEKNVKSSLVGIDDMKIINA--SIEENTVYITIRIVGQFISASYDKDNL-LISSD 199
+ ++ S V + + I A + E +I + + + I + ++ N +I D
Sbjct: 158 NWMLLKKEKNILSDVELKKVTPILAVENDENGEDFIWVLLKAKMIDYTINEKNNYIIDGD 217
Query: 200 PEIFGKVIDIWTFVRN 215
+ W F+R
Sbjct: 218 YATANSFEEFWKFIRK 233
>gi|153838005|ref|ZP_01990672.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
gi|149748613|gb|EDM59472.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
Length = 168
Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 25/79 (31%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGK 66
IL+ I F +F +RG+LG K G+ + SK ++ + +
Sbjct: 90 GIQFMDILIIGLIAFIIFKLMRGMLGAKQGSMNQQRQQPAFGGNASKFEQPNMQNFEQQP 149
Query: 67 KKDNLDSINELFPIGTRLN 85
+ N
Sbjct: 150 NTNAGGFTGFGAQTDVPHN 168
>gi|168211468|ref|ZP_02637093.1| putative membrane protein [Clostridium perfringens B str. ATCC
3626]
gi|170710549|gb|EDT22731.1| putative membrane protein [Clostridium perfringens B str. ATCC
3626]
Length = 275
Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 14/150 (9%), Positives = 47/150 (31%), Gaps = 12/150 (8%)
Query: 85 NKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST 144
+ ++++ ++ + +++ +I ++ + + +E L+ + +Y L
Sbjct: 103 SNKLKELALKDPYWNINYIKSVVEDTFYSIQYAWNDDEYERVESLLTTSLYNKHLKVLEE 162
Query: 145 RKSNEKNVKSSLVGID----DMKIINASIEENTVYITIRIVGQFISASYDKDNL--LISS 198
KS K + + + +++ + + +I
Sbjct: 163 LKSENKKNVLEDIQFNGCRIISLFEGDEKQWGFIWVEVNF--SMRDYIVNTKGKRRIIEG 220
Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ + W FV W+L +
Sbjct: 221 NDNYSRSDFEYWKFVYIEN----TWLLSNI 246
>gi|330843779|ref|XP_003293823.1| hypothetical protein DICPUDRAFT_158742 [Dictyostelium purpureum]
gi|325075809|gb|EGC29654.1| hypothetical protein DICPUDRAFT_158742 [Dictyostelium purpureum]
Length = 268
Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 30/209 (14%), Positives = 58/209 (27%), Gaps = 16/209 (7%)
Query: 33 KKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIV 92
+T P + + + + + I
Sbjct: 52 TRTAFNTPRRMKQNYFLQSTGAIFNEEVQPSLTSIITTPNKWYPYGKFIYQNITSHFVIK 111
Query: 93 SVYTDFD-----PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
S D + FL EA + + + +S +G H + +L + +
Sbjct: 112 SKLKALDRTRYTKRAFLKEAEDMFIKVNESIADGNKHQLNELSSIQFGEVVEKKSGYLNR 171
Query: 148 NEKNVKSSLVGIDDMKI---------INASIEENTVYITIRIVGQFISASYDKDNLLISS 198
N+ I + +A + +G +DK N LIS
Sbjct: 172 NKDLKFKWSCNITGKNLLWTRAGQIKTSAKSSTFFAQNCVEFIGTQSIQVFDKKNNLISE 231
Query: 199 DPEIFGKVIDIWTFVRNIPPSNPNWVLIS 227
+ + K+ I F RN+ + W + S
Sbjct: 232 NKDQPFKLEYI--FERNLASTPSMWRVCS 258
>gi|187777524|ref|ZP_02993997.1| hypothetical protein CLOSPO_01115 [Clostridium sporogenes ATCC
15579]
gi|187774452|gb|EDU38254.1| hypothetical protein CLOSPO_01115 [Clostridium sporogenes ATCC
15579]
Length = 268
Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 20/161 (12%), Positives = 58/161 (36%), Gaps = 8/161 (4%)
Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134
++ +V+R + V + N +Y + +++ + ++ + +
Sbjct: 99 TKISRKSKEAEEVIRRLKKVDMSYSKDMLQNRVEKTYFKMQEAWTSINLEISKEYMSEDI 158
Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKII--NASIEENTVYITIRIVGQFISASYDKD 192
Y+ N L+ + + + + + K + + + +I I G I + D+
Sbjct: 159 YKLHNSKLAWMEIRNQRNVLKNIKLLNAKPVGLEHYEDNSKDFIWFYIHGAMIDYTIDET 218
Query: 193 N-LLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
+I + ++ W F++ N +WV+ +
Sbjct: 219 TTQVIDGNTRN-SSFVEYWKFIK----KNDSWVVDLIMQED 254
>gi|168204988|ref|ZP_02630993.1| putative membrane protein [Clostridium perfringens E str. JGS1987]
gi|170663519|gb|EDT16202.1| putative membrane protein [Clostridium perfringens E str. JGS1987]
Length = 273
Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 14/148 (9%), Positives = 46/148 (31%), Gaps = 12/148 (8%)
Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
++++ ++ + +++ +I ++ + + +E L+ + +Y L K
Sbjct: 103 KLKELALKDPYWNINYIKSVVEDTFYSIQYAWNDDEYERVESLLTTSLYNKHIKVLEELK 162
Query: 147 SNEKNVKSSLVGID----DMKIINASIEENTVYITIRIVGQFISASYDKDNL--LISSDP 200
S K + + + +++ + + +I +
Sbjct: 163 SENKKNVLEDIQFNGCRIISLFEGNEEQWGFIWVEVNF--SMKDYIVNTKGKRRVIEGND 220
Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ W FV W+L +
Sbjct: 221 NYSRSDFEYWKFVYIEN----TWLLSNI 244
>gi|254582268|ref|XP_002497119.1| ZYRO0D15840p [Zygosaccharomyces rouxii]
gi|238940011|emb|CAR28186.1| ZYRO0D15840p [Zygosaccharomyces rouxii]
Length = 407
Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 19/156 (12%), Positives = 49/156 (31%), Gaps = 8/156 (5%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNS-YEAIVDSFFEGKVHAIEKLVDSRVYQDF 138
T KV+ + F + F + R+ +++++ +G ++K + +
Sbjct: 242 AETETAKVIGQFKLLDPSFTSEGFTRQLRDYVIPEVLEAYAKGDEKTLKKWFSEAPFNVY 301
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINAS--IEENTVYITIRIVGQFISASYD-KDNLL 195
+ + S ++ I + I++A ++ + + Q I K +
Sbjct: 302 AAQQKFFRDQKLFADSRILDIRGVDIVSAKLLPPQDIPVLIVGCRAQEIQLYRSIKSGEV 361
Query: 196 ISSDPEIFGKVIDIWTFVRNI----PPSNPNWVLIS 227
+ F R+ W +I
Sbjct: 362 AAGHESNILMSSYAMVFTRDPENVEDEETEGWRIIE 397
>gi|153938552|ref|YP_001389807.1| hypothetical protein CLI_0521 [Clostridium botulinum F str.
Langeland]
gi|152934448|gb|ABS39946.1| conserved hypothetical protein [Clostridium botulinum F str.
Langeland]
gi|295317894|gb|ADF98271.1| conserved hypothetical protein [Clostridium botulinum F str.
230613]
Length = 263
Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 20/161 (12%), Positives = 59/161 (36%), Gaps = 8/161 (4%)
Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134
++ K++R + +V + N +Y + +++ + ++ + +
Sbjct: 94 PKISRKSKEAEKIIRRLKNVDISYSKDMLQNRVEKTYFKMQEAWTSLNLEISKEYMSEDI 153
Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKII--NASIEENTVYITIRIVGQFISASYDK- 191
Y+ N L+ + + + + + K + + + +I I G I + D+
Sbjct: 154 YKLHNSKLAWMEIRNQRNVLKNIKLLNAKPVGLEHYKDNSKDFIWFYIHGAMIDYTIDEI 213
Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
++ + I+ W F++ N +WV+ +
Sbjct: 214 TTQVVDGNTRN-SSFIEYWKFIK----KNDSWVVDLIMQED 249
>gi|170756915|ref|YP_001780090.1| hypothetical protein CLD_0307 [Clostridium botulinum B1 str. Okra]
gi|169122127|gb|ACA45963.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
Length = 263
Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 20/161 (12%), Positives = 59/161 (36%), Gaps = 8/161 (4%)
Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134
++ K++R + +V + N +Y + +++ + ++ + +
Sbjct: 94 PKISRKSKEAEKIIRRLKNVDISYSKDMLQNRVEKTYFKMQEAWTSLNLEISKEYMSEDI 153
Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKII--NASIEENTVYITIRIVGQFISASYDK- 191
Y+ N L+ + + + + + K + + + +I I G I + D+
Sbjct: 154 YKLHNSKLAWMEIRNQRNVLKNIKLLNAKPVGLEHYKDNSKDFIWFYIHGAMIDYTIDEI 213
Query: 192 DNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLGE 232
++ + I+ W F++ N +WV+ +
Sbjct: 214 TTQVVDGNTRN-SSFIEYWKFIK----KNDSWVVDLIMQED 249
>gi|168212399|ref|ZP_02638024.1| putative membrane protein [Clostridium perfringens CPE str. F4969]
gi|170716069|gb|EDT28251.1| putative membrane protein [Clostridium perfringens CPE str. F4969]
Length = 273
Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 14/148 (9%), Positives = 46/148 (31%), Gaps = 12/148 (8%)
Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
++++ ++ + +++ +I ++ + + +E L+ + +Y L K
Sbjct: 103 KLKELALKDPYWNINYIKSVVEDTFYSIQYAWNDDEYERVESLLTTSLYNKHLKVLEELK 162
Query: 147 SNEKNVKSSLVGID----DMKIINASIEENTVYITIRIVGQFISASYDKDNL--LISSDP 200
S K + + + +++ + + +I +
Sbjct: 163 SENKKNVLEDIQFNGCRIISLFEGNEKQWGFIWVEVNF--SMRDYIVNTKGKRMIIEGND 220
Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ W FV W+L +
Sbjct: 221 NYSRSDFEYWKFVYIEN----TWLLSNI 244
>gi|330937393|gb|EGH41378.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
syringae pv. pisi str. 1704B]
Length = 179
Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 35/116 (30%), Gaps = 24/116 (20%)
Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERG 58
+F+ F IL+ I F +F R + ++ + + + Y
Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPPYQRETSQPAQ 140
Query: 59 IITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI 114
G+ +++ F+ + FL+ AR + ++
Sbjct: 141 NPIF------------------GSSSPASAAPVINAPAWFNEQRFLDAARGHFPSL 178
>gi|213405048|ref|XP_002173296.1| mitochondrial import inner membrane translocase subunit
[Schizosaccharomyces japonicus yFS275]
gi|212001343|gb|EEB07003.1| mitochondrial import inner membrane translocase subunit
[Schizosaccharomyces japonicus yFS275]
Length = 428
Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 14/139 (10%), Positives = 43/139 (30%), Gaps = 4/139 (2%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARN-SYEAIVDSFFEGKVHAIEKLVDSRVYQDF 138
T ++V+ + F+ + F R + +++ +G A+ + +
Sbjct: 263 SETEASQVVSRFKEIDPSFNSEVFQRYLREYIIPEVSEAYVKGDKEALRTWFSEAPFSVW 322
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASI--EENTVYITIRIVGQFISASYD-KDNLL 195
+ + ++ I + I + + N + I Q + + K +
Sbjct: 323 ETTTKEYAKHGVVSAGQVLDIRGVDIASYRMLQPNNIPVMVITFRTQEVHLFKNAKSGEV 382
Query: 196 ISSDPEIFGKVIDIWTFVR 214
++ + + R
Sbjct: 383 VAGRNDRIQQCTYAIVMTR 401
>gi|321259872|ref|XP_003194656.1| peripheral mitochondrial membrane protein; Tim44p [Cryptococcus
gattii WM276]
gi|317461128|gb|ADV22869.1| Peripheral mitochondrial membrane protein, putative; Tim44p
[Cryptococcus gattii WM276]
Length = 454
Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 16/155 (10%), Positives = 45/155 (29%), Gaps = 7/155 (4%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138
+V+R + ++ +F + E R +VD++ +++ +
Sbjct: 290 EENETAQVVRAMKALDPNFRMDRWTGELREYIVPEVVDAYLSADRESLKAWCGEATFNVL 349
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASI-EENTVYITIRIVG-QFISASYDKDNLLI 196
++ S ++ I + I + + E N I + + K ++
Sbjct: 350 WATMGQFIKQGLVSDSKILDIKHVDIAHGKMLENNVPVFVITFATQEQLLFRSAKTGKVV 409
Query: 197 SSDPEIFGKVIDIWTFVRNIPPSN----PNWVLIS 227
+ R + W ++
Sbjct: 410 VGSENDVEQCRYAMVITRLESELDNELTGGWKVVE 444
>gi|58268376|ref|XP_571344.1| import inner membrane translocase subunit tim44, mitochondrial
precursor [Cryptococcus neoformans var. neoformans
JEC21]
gi|134112776|ref|XP_774931.1| hypothetical protein CNBF0960 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257579|gb|EAL20284.1| hypothetical protein CNBF0960 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227579|gb|AAW44037.1| import inner membrane translocase subunit tim44, mitochondrial
precursor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 454
Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 16/155 (10%), Positives = 45/155 (29%), Gaps = 7/155 (4%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138
+V+R + ++ +F + E R +VD++ +++ +
Sbjct: 290 EENETAQVIRAMKALDPNFRMDRWTGELREYIVPEVVDAYLSADRESLKAWCGEATFNVL 349
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASI-EENTVYITIRIVG-QFISASYDKDNLLI 196
++ S ++ I + I + + E N I + + K ++
Sbjct: 350 WATMGQFIKQGLVSDSKILDIKHVDIAHGKMLENNIPVFVITFATQEQLLFRSAKTGKVV 409
Query: 197 SSDPEIFGKVIDIWTFVR----NIPPSNPNWVLIS 227
+ + R W ++
Sbjct: 410 VGSEDDVEQCRYAMVITRLESELENELTGGWKVVE 444
>gi|168216168|ref|ZP_02641793.1| putative membrane protein [Clostridium perfringens NCTC 8239]
gi|182381577|gb|EDT79056.1| putative membrane protein [Clostridium perfringens NCTC 8239]
Length = 273
Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 14/148 (9%), Positives = 46/148 (31%), Gaps = 12/148 (8%)
Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
++++ ++ + +++ +I ++ + + +E L+ + +Y L K
Sbjct: 103 KLKELALKDPYWNINYIKSVVEDTFYSIQYAWNDDEYERVESLLTTSLYNKHLKVLEELK 162
Query: 147 SNEKNVKSSLVGID----DMKIINASIEENTVYITIRIVGQFISASYDKDNL--LISSDP 200
S K + + + +++ + + +I +
Sbjct: 163 SENKKNVLEDIQFNGCRIISLFEGDEKQWGFIWVEVNF--SMKDYIVNTKGKRRIIEGND 220
Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ W FV W+L +
Sbjct: 221 NYSRSDFEYWKFVYIEN----TWLLSNI 244
>gi|227550990|ref|ZP_03981039.1| conserved hypothetical protein [Enterococcus faecium TX1330]
gi|257896617|ref|ZP_05676270.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|227179890|gb|EEI60862.1| conserved hypothetical protein [Enterococcus faecium TX1330]
gi|257833182|gb|EEV59603.1| conserved hypothetical protein [Enterococcus faecium Com12]
Length = 254
Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 5/130 (3%)
Query: 100 PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159
FL + + I ++ E +++ + L K++ + + I
Sbjct: 125 KAQFLE-IQKIFMKIQSAWEEETPEKARSCYTDKLFAEHQKVLQKNKADGVRNHTKKITI 183
Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
++ E + I I S KD +IS IW F +
Sbjct: 184 QEVGNYRQIHENSF-AIRIDFRCCDYSVDR-KDGRVISGSKTQRQYFSQIWYF--DFSEK 239
Query: 220 NPNWVLISTK 229
W +
Sbjct: 240 EKRWQADFIQ 249
>gi|293379681|ref|ZP_06625817.1| conserved hypothetical protein [Enterococcus faecium PC4.1]
gi|292641679|gb|EFF59853.1| conserved hypothetical protein [Enterococcus faecium PC4.1]
Length = 254
Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 5/130 (3%)
Query: 100 PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159
FL + + I ++ E +++ + L K++ + + I
Sbjct: 125 KAQFLE-IQKIFMKIQSAWEEETPEKARSCYTDKLFAEHQKVLQKNKADGVRNHTKKITI 183
Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
++ E + I I S KD +IS IW F +
Sbjct: 184 QEVGNYRQIHENSF-AIRIDFRCCDYSVDR-KDGRVISGSKTQRQYFSQIWYF--DFSEK 239
Query: 220 NPNWVLISTK 229
W +
Sbjct: 240 EKRWQADFIQ 249
>gi|257893754|ref|ZP_05673407.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|257830133|gb|EEV56740.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
Length = 254
Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 5/130 (3%)
Query: 100 PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159
FL + + I ++ E +++ + L K++ + + I
Sbjct: 125 KAQFLE-IQKIFMKIQSAWEEETPEKARSCYTDKLFAEHQKVLQKNKADGVRNHTKKITI 183
Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
++ E + I I S KD +IS IW F +
Sbjct: 184 QEVGNYRQIHENSF-AIRIDFRCCDYSVDR-KDGRVISGSKTQRQYFSQIWYF--DFSEK 239
Query: 220 NPNWVLISTK 229
W +
Sbjct: 240 EKRWQADFIQ 249
>gi|257900091|ref|ZP_05679744.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|293572221|ref|ZP_06683220.1| conserved hypothetical protein [Enterococcus faecium E980]
gi|257838003|gb|EEV63077.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|291607680|gb|EFF37003.1| conserved hypothetical protein [Enterococcus faecium E980]
Length = 254
Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 39/131 (29%), Gaps = 7/131 (5%)
Query: 100 PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159
FL + + I ++ E +++ + L K++ + V I
Sbjct: 125 KAQFLE-IQKIFMKIQSAWEEETPEKARSCYTDKLFAEHQKVLQKNKADGVRNHTKKVTI 183
Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYD-KDNLLISSDPEIFGKVIDIWTFVRNIPP 218
++ + + IRI + D KD LIS IW F +
Sbjct: 184 QEV---GNYRQIHENSFAIRIDFRCCDYLVDRKDGRLISGSTTQRQYFSQIWYF--DFSE 238
Query: 219 SNPNWVLISTK 229
W +
Sbjct: 239 KEKRWQADFIQ 249
>gi|257888872|ref|ZP_05668525.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257824928|gb|EEV51858.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
Length = 254
Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 5/130 (3%)
Query: 100 PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159
FL + + I ++ E +++ + L K++ + + I
Sbjct: 125 KAQFLE-IQKIFMKIQSAWEEETPEKARSCYTDKLFAEHQKVLQKNKADGVRNHTKKITI 183
Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
++ E + I I S KD +IS IW F +
Sbjct: 184 QEVGNYRQIHENSF-AIRIDFRCCDYSVDR-KDGRVISGSKTQRQYFSQIWYF--DFSEK 239
Query: 220 NPNWVLISTK 229
W +
Sbjct: 240 EKRWQADFIQ 249
>gi|331242860|ref|XP_003334075.1| hypothetical protein PGTG_15619 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309313065|gb|EFP89656.1| hypothetical protein PGTG_15619 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 319
Score = 46.5 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 24/201 (11%), Positives = 67/201 (33%), Gaps = 11/201 (5%)
Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVS 93
K G +K G+++ ++ ++ + ++ + GT +
Sbjct: 118 KVGWQKNRLKEAWGQWLGQRQSKQNVDSVLS-PGNPSWMKDFADEAYGTIILAHQTVTSG 176
Query: 94 VYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQ--DFNDSLSTRKSNEKN 151
+ D K FL + ++V+ E + + S + + + K ++
Sbjct: 177 SFEDPQVKKFL------HPSMVEFLQEKRERLLRSYSPSHLITWTKHSPAPEAGKKGKQA 230
Query: 152 VKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWT 211
+ I M+ V I +R D+ LL+ +++ +
Sbjct: 231 QPEKELEIVAMRAAPFDQGGTVVQIAVRFKSLQSLEIRDERGLLVFGSHSKPQPIMEYFV 290
Query: 212 FVRNIPPSNPNWVLISTKLGE 232
F + + ++ ++ L+ + +
Sbjct: 291 FQKRMGQTDQSFRLL--QQVD 309
>gi|320582288|gb|EFW96505.1| Peripheral mitochondrial membrane protein [Pichia angusta DL-1]
Length = 412
Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 15/156 (9%), Positives = 52/156 (33%), Gaps = 8/156 (5%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDF 138
T +V++ + +F+ + + R +++++ G+ ++ + +
Sbjct: 247 AETEGARVIKAFRELDPNFNTESLTKQLREYIVPEVLEAYITGEEKVLKTWLSEAPFNII 306
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASI---EENTVYITIRIVGQFISASYDKDNLL 195
+ ++ + D++I+++ + + V++ V + K +
Sbjct: 307 AAQQKQLRDQGLISDGRILDVRDVQIVSSRMLEPNQIPVFVVSARVQEVNLYRKAKTGEV 366
Query: 196 ISSDPEIFGKVIDIWTFVR-NIPPSNPN---WVLIS 227
++ E R NP W ++
Sbjct: 367 VAGTEEDILLSAYALVITRVPEEIDNPETEGWKILE 402
>gi|66808087|ref|XP_637766.1| hypothetical protein DDB_G0286445 [Dictyostelium discoideum AX4]
gi|60466184|gb|EAL64247.1| hypothetical protein DDB_G0286445 [Dictyostelium discoideum AX4]
Length = 279
Score = 45.7 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 12/141 (8%)
Query: 97 DFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQD-FNDSLSTRKSNEKNVKSS 155
+ K FL EA + + + EG + I + + F ++ + +
Sbjct: 134 HYSKKKFLAEAEEMFNELGKAVAEGNKNDINDISTIQFSSVVFKNTGINDTNIKNYKTEW 193
Query: 156 LVGIDDMKII---------NASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKV 206
I+ K+I S + G DK++ +ISS + K
Sbjct: 194 NGKINSKKMIWSRAGQIKLTHSETSFFAQNCVEFTGTQSIIVKDKNDKVISSIEDQPFKS 253
Query: 207 IDIWTFVRNIPPSNPNWVLIS 227
+ F RN+ W + S
Sbjct: 254 EYV--FERNVSSLPSQWRIAS 272
>gi|108761631|ref|YP_631938.1| hypothetical protein MXAN_3756 [Myxococcus xanthus DK 1622]
gi|108465511|gb|ABF90696.1| hypothetical protein MXAN_3756 [Myxococcus xanthus DK 1622]
Length = 654
Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 17/169 (10%), Positives = 53/169 (31%), Gaps = 14/169 (8%)
Query: 60 ITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFF 119
K + ++ + + + F+ + L++ + + + ++F
Sbjct: 101 PDATTRKALEQREAYQRTQVSQRDVQGWVNALKLKDPAFELEPMLDKTKWLFMELQQAWF 160
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIR 179
+ + + +Q F L ++ + + D+++I + I +R
Sbjct: 161 LRDMTPVRPFLSDATFQRFGVQLELMRAQGVRDAITDFEVLDLQLIGLDQSQWFDSIHVR 220
Query: 180 IVGQFISASYDKDNLLISSDPEIFGK---------VIDIWTFVRNIPPS 219
+ + ++ +S + ++WTFVR
Sbjct: 221 VHARMRD-----TDVPVSFSDAQATEAARKVPSEAFTEVWTFVRKPGAQ 264
>gi|91228595|ref|ZP_01262513.1| hypothetical protein V12G01_00367 [Vibrio alginolyticus 12G01]
gi|91187827|gb|EAS74141.1| hypothetical protein V12G01_00367 [Vibrio alginolyticus 12G01]
Length = 148
Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 7 DSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
IL+ I F +F +RG+LG K G+ + SK ++ + L
Sbjct: 90 GIQFMDILIIGLIAFVIFKLMRGMLGAKQGSMNQHRQQPAFGGNASKFEQPNMQNLSNN 148
>gi|69245633|ref|ZP_00603546.1| conserved hypothetical protein [Enterococcus faecium DO]
gi|257878966|ref|ZP_05658619.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257881592|ref|ZP_05661245.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257890819|ref|ZP_05670472.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|258615401|ref|ZP_05713171.1| hypothetical protein EfaeD_06778 [Enterococcus faecium DO]
gi|293563655|ref|ZP_06678097.1| conserved hypothetical protein [Enterococcus faecium E1162]
gi|293568492|ref|ZP_06679812.1| conserved hypothetical protein [Enterococcus faecium E1071]
gi|294621140|ref|ZP_06700329.1| conserved hypothetical protein [Enterococcus faecium U0317]
gi|314938609|ref|ZP_07845890.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
gi|314943065|ref|ZP_07849867.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
gi|314948335|ref|ZP_07851725.1| conserved hypothetical protein [Enterococcus faecium TX0082]
gi|314952097|ref|ZP_07855117.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
gi|314991963|ref|ZP_07857417.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
gi|314995098|ref|ZP_07860216.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
gi|68195653|gb|EAN10092.1| conserved hypothetical protein [Enterococcus faecium DO]
gi|257813194|gb|EEV41952.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257817250|gb|EEV44578.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257827179|gb|EEV53805.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|291588828|gb|EFF20656.1| conserved hypothetical protein [Enterococcus faecium E1071]
gi|291599308|gb|EFF30336.1| conserved hypothetical protein [Enterococcus faecium U0317]
gi|291604402|gb|EFF33894.1| conserved hypothetical protein [Enterococcus faecium E1162]
gi|313590674|gb|EFR69519.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
gi|313593473|gb|EFR72318.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
gi|313595773|gb|EFR74618.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
gi|313598210|gb|EFR77055.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
gi|313642065|gb|EFS06645.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
gi|313645201|gb|EFS09781.1| conserved hypothetical protein [Enterococcus faecium TX0082]
Length = 254
Score = 45.3 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 5/130 (3%)
Query: 100 PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159
FL + + I ++ E +++ + L K++ + + I
Sbjct: 125 KAQFLE-IQKIFMKIQSAWEEETPEKARSCYTDKLFAEHQKVLQKNKADGVRNHTKKITI 183
Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
++ E + I I S KD LIS IW F +
Sbjct: 184 QEVGNYRQIHENSF-AIRIDFRCCDYSVDR-KDGRLISGSKTQRQYFSQIWYF--DFSEK 239
Query: 220 NPNWVLISTK 229
W +
Sbjct: 240 EKRWQADFIQ 249
>gi|110798932|ref|YP_695458.1| hypothetical protein CPF_1012 [Clostridium perfringens ATCC 13124]
gi|110673579|gb|ABG82566.1| putative membrane protein [Clostridium perfringens ATCC 13124]
Length = 273
Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 15/148 (10%), Positives = 46/148 (31%), Gaps = 12/148 (8%)
Query: 87 VMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRK 146
++++ T ++ + +++ +I ++ + + +E L+ + +Y L K
Sbjct: 103 KLKELALKDTYWNINYIKSVVEDTFYSIQYAWNDDEYERVESLLTTSLYNKHLKVLEELK 162
Query: 147 SNEKNVKSSLVGID----DMKIINASIEENTVYITIRIVGQFISASYDKDNL--LISSDP 200
S K + + +++ + + +I +
Sbjct: 163 SENKKNVLEDIQFKGCRIISLFEGDEKQWGFIWVEVNF--SMRDYIVNTKGKRRVIEGND 220
Query: 201 EIFGKVIDIWTFVRNIPPSNPNWVLIST 228
+ W FV W+L +
Sbjct: 221 NYSRSDFEYWKFVYIEN----TWLLSNI 244
>gi|256394912|ref|YP_003116476.1| import inner membrane translocase subunit Tim44 [Catenulispora
acidiphila DSM 44928]
gi|256361138|gb|ACU74635.1| import inner membrane translocase subunit Tim44 [Catenulispora
acidiphila DSM 44928]
Length = 448
Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats.
Identities = 27/222 (12%), Positives = 71/222 (31%), Gaps = 27/222 (12%)
Query: 12 LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71
++L+ A I V+ + G G+++ L G +
Sbjct: 65 VLLIVAVIVLIVWFAFKARSGNGVGSKR---------------------GLNTGSDRTAH 103
Query: 72 DSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVD 131
S T++ + + + P+ A Y ++ + +++++
Sbjct: 104 RSDAAAAQRATQIEARVAAVADNDPTYAPEALKARAVWLYTTAQRAWSDRDRAVLKQILS 163
Query: 132 SRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT--VYITIRIVGQFISASY 189
+Y +++ L +S + +V ++++N + IT RI
Sbjct: 164 PVLYVKWDEELRDYQSRGEINTVDIVSGPSVQMVNIANRAGEVNDTITFRITATLNDRVV 223
Query: 190 DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKLG 231
+ V + WT ++ ++ W++ S +
Sbjct: 224 RANGSHAVRKDGSTRPV-EYWTLRKD---ASGEWMVASIEQA 261
>gi|325118573|emb|CBZ54124.1| hypothetical protein NCLIV_045570 [Neospora caninum Liverpool]
Length = 624
Score = 44.9 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 22/202 (10%), Positives = 62/202 (30%), Gaps = 20/202 (9%)
Query: 34 KTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELF-----PIGTRLNKVM 88
+ G E+P + + + K+ L + E T + +
Sbjct: 397 RPGEERPTPEEQREDALVLSQRTTWDRFSSRFKEMSFLQNFFENPLVAQLFGETEIAASI 456
Query: 89 RDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKS 147
R++ + F D N IV +F G + + S+ R++
Sbjct: 457 REMKILDPKFKLGDLHNMMERVVAGHIVQAFLLGDEGTLAVHCAEGAFAALRASIIERRA 516
Query: 148 NEKNVKSSLVGIDDMKIINASIE-------------ENTVYITIRIVGQFISASYDK-DN 193
+ + S ++ + +++++ A + + Q ++ + D
Sbjct: 517 QKVRLDSEILQLGNVELVGARRSITPPICATANFSADECPWFVYTFTCQQVNCLRSEVDG 576
Query: 194 LLISSDPEIFGKVIDIWTFVRN 215
++ + +V+ ++
Sbjct: 577 RVVEGREDDIRRVVYSVAVSKH 598
>gi|121582973|ref|YP_973415.1| hypothetical protein Pnap_4395 [Polaromonas naphthalenivorans CJ2]
gi|120596235|gb|ABM39673.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]
Length = 146
Score = 44.9 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 11/123 (8%), Positives = 37/123 (30%), Gaps = 21/123 (17%)
Query: 109 NSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINAS 168
++ ++ D G A+ ++ ++ + S+ + + + + + + +
Sbjct: 45 EAFRSLQDFNSTGNKEALRRVTTPGMFAELEGSMGSPPLR--------ILVLNASVQDVT 96
Query: 169 IEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLIST 228
E + ++R + + ++W FV W L
Sbjct: 97 EEPHQTVASVRY-----------TGEVTEG-VNPPEPIDEVWHFVLPRSSP-AVWQLAGI 143
Query: 229 KLG 231
+
Sbjct: 144 EQV 146
>gi|257886221|ref|ZP_05665874.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257822077|gb|EEV49207.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
Length = 254
Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 5/130 (3%)
Query: 100 PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159
FL + + I ++ E +++ + L K++ + + I
Sbjct: 125 KAQFLE-IQKIFMKIQSAWEEETPEKARSCYTDKLFAEHQKVLQKSKADGVRNHTKKITI 183
Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
++ E + I I S KD LIS IW F +
Sbjct: 184 QEVGNYRQIHENSF-AIRIDFRCCDYSVDR-KDGRLISGSKTQRQYFSQIWYF--DFSEK 239
Query: 220 NPNWVLISTK 229
W +
Sbjct: 240 EKRWQADFIQ 249
>gi|294620173|ref|ZP_06699511.1| conserved hypothetical protein [Enterococcus faecium E1679]
gi|291593579|gb|EFF25115.1| conserved hypothetical protein [Enterococcus faecium E1679]
Length = 238
Score = 44.5 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 5/130 (3%)
Query: 100 PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159
FL + + I ++ E +++ + L K++ + + I
Sbjct: 109 KAQFLE-IQKIFMKIQSAWEEETPEKARSCYTDKLFAEHQKVLQKNKADGVRNHTKKITI 167
Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
++ E + I I S KD LIS IW F +
Sbjct: 168 QEVGNYRQIHENSF-AIRIDFRCCDYSVDR-KDGRLISGSKTQRQYFSQIWYF--DFSEK 223
Query: 220 NPNWVLISTK 229
W +
Sbjct: 224 EKRWQADFIQ 233
>gi|328872023|gb|EGG20393.1| hypothetical protein DFA_07517 [Dictyostelium fasciculatum]
Length = 535
Score = 43.8 bits (101), Expect = 0.020, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 42/131 (32%), Gaps = 3/131 (2%)
Query: 96 TDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKS 154
F+ FL A++ + ++ +F V +E +++ + ++ ++ K
Sbjct: 390 PGFEFNKFLPIAKSKFIPEFLELYFANDVDGLEDFCGETLHKMLSGIIAANEAGHKVFDG 449
Query: 155 SLVGIDDMKIINASIEENTVYITIRI--VGQFISASYDKDNLLISSDPEIFGKVIDIWTF 212
+V ID + + + EN V D ++ K I
Sbjct: 450 KIVKIDTLDFMGINESENREETYFSFLVVVHHTYCIRDYQFEIVEGGDHEIIKTQMIVHM 509
Query: 213 VRNIPPSNPNW 223
+ + W
Sbjct: 510 SVDTDLNEFGW 520
>gi|149921069|ref|ZP_01909528.1| hypothetical protein PPSIR1_09510 [Plesiocystis pacifica SIR-1]
gi|149818073|gb|EDM77530.1| hypothetical protein PPSIR1_09510 [Plesiocystis pacifica SIR-1]
Length = 506
Score = 43.4 bits (100), Expect = 0.026, Method: Composition-based stats.
Identities = 13/171 (7%), Positives = 44/171 (25%), Gaps = 2/171 (1%)
Query: 54 RDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA 113
R T + + + + + + ++
Sbjct: 288 RQRELKQTPPALGGYAPEVGNDRPTLVDPGFKRAIARLYEEDPALNRHTLEARVVYVFDV 347
Query: 114 IVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENT 173
+ ++ + ++ Y + N ++ ++++ + +
Sbjct: 348 LNAAWTARDLGPARGVLSEGQYDSLRYWIEAYHRNGLINVLEQPQVESIRLVKLVRDAHF 407
Query: 174 VYITIRIVGQFISASY--DKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN 222
+T+R+ I + D + D + + WT +R P
Sbjct: 408 DALTVRVFASSIDYTVRDDPRRTPVGGDRRRPRRYTEYWTLIRGAGVRGPT 458
>gi|163801175|ref|ZP_02195075.1| hypothetical protein 1103602000593_AND4_02893 [Vibrio sp. AND4]
gi|159175524|gb|EDP60321.1| hypothetical protein AND4_02893 [Vibrio sp. AND4]
Length = 230
Score = 42.6 bits (98), Expect = 0.048, Method: Composition-based stats.
Identities = 16/158 (10%), Positives = 45/158 (28%), Gaps = 12/158 (7%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
R K + + FD ++S+ + + + + + + L+ ++
Sbjct: 55 AEKRAFKDLAFMSHYSEHFDWLRIEQRVKDSFLRVHNGWQDEDLSDVSSLMTESYLRNQQ 114
Query: 140 DSLST-RKSNEKNVKSSLVGIDDMKIINASIEEN-----TVYITIRIVGQFISASY-DKD 192
K ++ I +K + + I + + + +
Sbjct: 115 QVYLDKWKQKGLVNICNIKIIKQIKPLMVVHRNHKEGHRESTILVTVKAEMNDYLKHRET 174
Query: 193 NLLISSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
+ + E + V +WTF + W +
Sbjct: 175 GAISEGNEE-YKTVTTVWTFS----LVDDEWKVADINQ 207
>gi|221486633|gb|EEE24894.1| import inner membrane translocase subunit TIM44, putative
[Toxoplasma gondii GT1]
Length = 598
Score = 41.8 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 16/153 (10%), Positives = 49/153 (32%), Gaps = 15/153 (9%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAIEKLVDSRVYQDF 138
T + +R++ + F D N IV +F G + +
Sbjct: 422 GETEIAASIREMKILDPKFKLADMHNMMERVIAAHIVQAFLLGDEGTLAVHCAEGAFAAM 481
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIE-------------ENTVYITIRIVGQFI 185
S+ R++ + + S ++ + +++++ A + + Q +
Sbjct: 482 RASIIERRAQKVRLDSEILQLGNVELVGARRSLTPPICATQNFSADECPWFVYTFTCQQV 541
Query: 186 SASYDK-DNLLISSDPEIFGKVIDIWTFVRNIP 217
+ + D ++ + +V+ ++
Sbjct: 542 NCLRSEVDGRVVEGREDDIRRVVYSIAVSKHPK 574
>gi|322509115|gb|ADX04569.1| putative exported protein [Acinetobacter baumannii 1656-2]
Length = 78
Score = 41.8 bits (96), Expect = 0.077, Method: Composition-based stats.
Identities = 8/84 (9%), Positives = 28/84 (33%), Gaps = 12/84 (14%)
Query: 148 NEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
++ + + +++++ E +++R + +
Sbjct: 7 ENQDQDVAEFSNLNAMVVDSATENGQYIVSVRF-----------TGTVSEDLNSLPQPFT 55
Query: 208 DIWTFVRNIPPSNPNWVLISTKLG 231
+IW FV+ + +WV+ +
Sbjct: 56 EIWHFVKPVGSQQ-DWVVAGIQQA 78
>gi|237834217|ref|XP_002366406.1| mitochondrial import inner membrane translocase TIM44, putative
[Toxoplasma gondii ME49]
gi|211964070|gb|EEA99265.1| mitochondrial import inner membrane translocase TIM44, putative
[Toxoplasma gondii ME49]
Length = 598
Score = 41.8 bits (96), Expect = 0.084, Method: Composition-based stats.
Identities = 16/153 (10%), Positives = 49/153 (32%), Gaps = 15/153 (9%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAIEKLVDSRVYQDF 138
T + +R++ + F D N IV +F G + +
Sbjct: 422 GETEIAASIREMKILDPKFKLADMHNMMERVIAAHIVQAFLLGDEGTLAVHCAEGAFAAM 481
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIE-------------ENTVYITIRIVGQFI 185
S+ R++ + + S ++ + +++++ A + + Q +
Sbjct: 482 RASIIERRAQKVRLDSEILQLGNVELVGARRSLTPPICATQNFSADECPWFVYTFTCQQV 541
Query: 186 SASYDK-DNLLISSDPEIFGKVIDIWTFVRNIP 217
+ + D ++ + +V+ ++
Sbjct: 542 NCLRSEVDGRVVEGREDDIRRVVYSIAVSKHPK 574
>gi|221508389|gb|EEE33976.1| mitochondrial import inner membrane translocase TIM44, putative
[Toxoplasma gondii VEG]
Length = 598
Score = 41.5 bits (95), Expect = 0.10, Method: Composition-based stats.
Identities = 16/153 (10%), Positives = 49/153 (32%), Gaps = 15/153 (9%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAIEKLVDSRVYQDF 138
T + +R++ + F D N IV +F G + +
Sbjct: 422 GETEIAASIREMKILDPKFKLADMHNMMERVIAAHIVQAFLLGDEGTLAVHCAEGAFAAM 481
Query: 139 NDSLSTRKSNEKNVKSSLVGIDDMKIINASIE-------------ENTVYITIRIVGQFI 185
S+ R++ + + S ++ + +++++ A + + Q +
Sbjct: 482 RASIIERRAQKVRLDSEILQLGNVELVGARRSLTPPICATQNFSADECPWFVYTFTCQQV 541
Query: 186 SASYDK-DNLLISSDPEIFGKVIDIWTFVRNIP 217
+ + D ++ + +V+ ++
Sbjct: 542 NCLRSEVDGRVVEGREDDIRRVVYSIAVSKHPK 574
>gi|281207677|gb|EFA81857.1| hypothetical protein PPL_05089 [Polysphondylium pallidum PN500]
Length = 268
Score = 41.1 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 27/203 (13%), Positives = 58/203 (28%), Gaps = 12/203 (5%)
Query: 32 GKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDI 91
G++ KP S VF I++ + G+ +
Sbjct: 59 GRRI---KPNIFVQSPGQVFENAMPSPIVSTLLSPSLWFDQAKYYYKTFGSYSMIKSKLK 115
Query: 92 VSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHA------IEKLVDSRVYQDFNDSLSTR 145
F K FL E++ Y + + G + ++ ++ S+
Sbjct: 116 KLTDEKFTVKQFLEESKEKYTKLNQTMLSGNIDKDITTIYFHSVLSTQFKSQPKYIKSSW 175
Query: 146 KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYD-KDNLLISSDPEIFG 204
+ K+ +K + E I + G + D ++ + +
Sbjct: 176 SAELNKPKAIWSRSGQIKTSLSGDTEFFAQICVEFSGTQSMSLVDTRNGTTL--SEAVNV 233
Query: 205 KVIDIWTFVRNIPPSNPNWVLIS 227
DI+ F R + W + +
Sbjct: 234 PFKDIYVFERCLSSLPSEWKICA 256
>gi|328863140|gb|EGG12240.1| hypothetical protein MELLADRAFT_73983 [Melampsora larici-populina
98AG31]
Length = 318
Score = 41.1 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 28/74 (37%)
Query: 152 VKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWT 211
K + + I M+ V I +R D+ LL+S E V++ +
Sbjct: 230 PKETEMEIVTMRAAPFDKGGTVVQIAVRFRTYQSLEVRDECGLLVSGSHESPQLVMEYFV 289
Query: 212 FVRNIPPSNPNWVL 225
F + + N ++L
Sbjct: 290 FQKRMSMVNQPFLL 303
>gi|307185468|gb|EFN71468.1| Uncharacterized protein C2orf47-like protein, mitochondrial
[Camponotus floridanus]
Length = 178
Score = 41.1 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 50/164 (30%), Gaps = 7/164 (4%)
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ + L P+ +R + +FD +FL A+ + I + ++
Sbjct: 4 DQAPAHVPSLLTPLKLLYLSTLRIAPYIDKEFDIAEFLKGAKYATAIISKALTNKNYDSL 63
Query: 127 EKLVDSRVYQDFNDSLSTR--KSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
+ LV + + + T + + M + I I + +
Sbjct: 64 QGLVTEDMIEILRAKIETLSPNQRQLIAVDETDMLFYMLSDIDATVGEEHSIKITTICHY 123
Query: 185 ISASYDKDNL-LISSDPEIFGKVIDIW---TFVRN-IPPSNPNW 223
I +K N ++S + + TF R I W
Sbjct: 124 IQGLAEKKNKMMMSGLIDFTTSTKHLVCNYTFTRKYINNIGGPW 167
>gi|332140272|ref|YP_004426010.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'Deep ecotype']
gi|327550294|gb|AEA97012.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'Deep ecotype']
Length = 959
Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats.
Identities = 30/200 (15%), Positives = 59/200 (29%), Gaps = 20/200 (10%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
I+L A I F+F+ L V T E+ S + E +L D
Sbjct: 253 IVLLAMIAGFIFIILHMVSMTGTLAERTLSKLY----------EDIKNSLNSNSNAPLRD 302
Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
+ + K ++ T+ + + N E++ D + E L+ +
Sbjct: 303 DQQLEAQELSDIRKAFDKLIWDLTEVSLSN--EQFSNVLESMGDMLVVVDQNQ-EVLLSN 359
Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
+ + DF D K +G + R V ++ D +
Sbjct: 360 KRFDDFCDDQYGEKQGILKFIMQKLGATQSNELKHFSVSTGQE---RFVRWTKTSLADAN 416
Query: 193 NLLIS----SDPEIFGKVID 208
+ E + ++
Sbjct: 417 GNIRGDIFVGSDETEQRSLE 436
>gi|327404559|ref|YP_004345397.1| hypothetical protein Fluta_2575 [Fluviicola taffensis DSM 16823]
gi|327320067|gb|AEA44559.1| hypothetical protein Fluta_2575 [Fluviicola taffensis DSM 16823]
Length = 483
Score = 39.5 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 34/204 (16%), Positives = 64/204 (31%), Gaps = 24/204 (11%)
Query: 15 LFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSI 74
+ I V L + +L K+ + ++T KG
Sbjct: 53 IPGLIGLAVVLIIYFILRKR------------LGLGSGSGSKSSLMTGLKGAMSGGGIGG 100
Query: 75 NELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRV 134
I ++ D + + S+ A+ ++ E + + K + V
Sbjct: 101 ALSAVIAKDFTGASTVGNKLFPDGLTE---EKVSTSFMALQAAWEEQDLSKVRKWMSDGV 157
Query: 135 YQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF----ISASYD 190
YQ F K ++ S V I D+ +++ + I I IS Y
Sbjct: 158 YQRFTAQFIMMKQLTQSNTLSNVRIKDVSVMDIRTDGEYQSADISITFSMDDRFISEKYP 217
Query: 191 KDNLLISSDPEIFGKVIDIWTFVR 214
+ N D + +IWTF++
Sbjct: 218 ELNESYKGDSD-----TEIWTFIK 236
>gi|330898718|gb|EGH30137.1| import inner membrane translocase, subunit Tim44 [Pseudomonas
syringae pv. japonica str. M301072PT]
Length = 135
Score = 39.5 bits (90), Expect = 0.41, Method: Composition-based stats.
Identities = 7/55 (12%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSK 53
+F+ F IL+ I F+ + + ++ ++P ++
Sbjct: 84 MFMGDGFNGLQLFDILIMGLIA-FLIFR---FMARRRQQQQPKMAAAGAPPYQTE 134
>gi|322703773|gb|EFY95377.1| hypothetical protein MAA_09191 [Metarhizium anisopliae ARSEF 23]
Length = 434
Score = 39.1 bits (89), Expect = 0.42, Method: Composition-based stats.
Identities = 13/101 (12%), Positives = 23/101 (22%), Gaps = 2/101 (1%)
Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
+ + LI + + F+F + R + F G L
Sbjct: 270 AAIGTAVPLIFIALALAAFIFYRRRNRSKTRAEAASEQGSGFPGMNKPELDATPSPFALS 329
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFL 104
G + + P R S F+
Sbjct: 330 LGPGSELDGTPRPSPPGDDSTAAGGRV--SELPGPGVARFV 368
>gi|196231899|ref|ZP_03130755.1| Tetratricopeptide TPR_2 repeat protein [Chthoniobacter flavus
Ellin428]
gi|196224021|gb|EDY18535.1| Tetratricopeptide TPR_2 repeat protein [Chthoniobacter flavus
Ellin428]
Length = 463
Score = 39.1 bits (89), Expect = 0.53, Method: Composition-based stats.
Identities = 20/209 (9%), Positives = 48/209 (22%), Gaps = 24/209 (11%)
Query: 13 ILLFAFITFFVF----------LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL 62
IL+ A I V + LR L ++ ++ + + R+ +
Sbjct: 30 ILIIAGIALAVIADLGAGVGGVMFLRKFLQRRVEQQRKPDHIITDRTRRIARNPNDVRAY 89
Query: 63 GKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK 122
+ + NK + + + ++ + YE +
Sbjct: 90 KDRAQARTDTGDYD--GAIADYNKALELDPKDAHLYTWRAYVRNLQFRYEDAIAD----- 142
Query: 123 VHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVG 182
+ D + + + A G
Sbjct: 143 -------CTKAITIDAKLPPAYSNRGYARRHEGDLAGSLADLNRAIELSPKTAAVYSSRG 195
Query: 183 QFISASYDKDNLLISSDPEIFGKVIDIWT 211
+ D + + + I + D W
Sbjct: 196 ETKYEQRDYEGAVADYNQAITLQPNDKWH 224
>gi|289677453|ref|ZP_06498343.1| Tim44-like domain-contain protein [Pseudomonas syringae pv.
syringae FF5]
Length = 133
Score = 38.8 bits (88), Expect = 0.57, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 2 VFIKMDSG---DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVF 51
+F+ F IL+ I F +F R + ++ + + +
Sbjct: 84 MFMGDGFNGLQLFDILIMGLIAFLIF---RFIARRRQQQQPKMAAAGAPPSPR 133
>gi|154503009|ref|ZP_02040069.1| hypothetical protein RUMGNA_00831 [Ruminococcus gnavus ATCC 29149]
gi|153796363|gb|EDN78783.1| hypothetical protein RUMGNA_00831 [Ruminococcus gnavus ATCC 29149]
Length = 676
Score = 38.0 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 12/98 (12%), Positives = 31/98 (31%), Gaps = 1/98 (1%)
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITI- 178
+ + + F + + ++ S L I D + + ++ YI I
Sbjct: 578 NQYGKGYAYYICTDAEELFYHDFYAKILAKHHIHSILNTIPDGIEVTSRTDDEYEYIFIQ 637
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNI 216
+ I+ K +I + + + F + +
Sbjct: 638 NFSYRNINIVLPKKGDIIYGNKNGNIRQYETIVFRKKL 675
>gi|118398965|ref|XP_001031809.1| hypothetical protein TTHERM_00723310 [Tetrahymena thermophila]
gi|89286143|gb|EAR84146.1| hypothetical protein TTHERM_00723310 [Tetrahymena thermophila
SB210]
Length = 267
Score = 37.6 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 44/140 (31%), Gaps = 9/140 (6%)
Query: 93 SVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNV 152
D + + + + + K ++ ++ + F ++ ++ K +
Sbjct: 105 KDEDGEDLNIKNQQVSQFVQNQIINATQYKEIDMKIML--EAHGVFGARINREENVGKVM 162
Query: 153 KSSLVGIDDMKIINASIEENTVY-----ITIRIVGQFISASYDKDNLLISSDPEIFGKVI 207
+ +N S N + + + D+D LI + + ++
Sbjct: 163 ELRGRLSSRSYFVNFSNLMNLYHNQILSLNVYFQTTRRLYVTDEDGDLIHGEDTLNKEIS 222
Query: 208 DIWTFVRNIPPSNPNWVLIS 227
+W F N +WVL
Sbjct: 223 HVWRFE--TYTPNFDWVLTD 240
>gi|308495169|ref|XP_003109773.1| CRE-SMA-9 protein [Caenorhabditis remanei]
gi|308245963|gb|EFO89915.1| CRE-SMA-9 protein [Caenorhabditis remanei]
Length = 2426
Score = 37.6 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 53/182 (29%), Gaps = 7/182 (3%)
Query: 30 VLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMR 89
V GKK EK + + + P + K MR
Sbjct: 785 VCGKKREFEKAQQAAAENNPHSALKRRHTHQDATFAMNSPLAAATPSSMPGPSEPVKKMR 844
Query: 90 DIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNE 149
S D P + R+S+ + +E + + L + F + +
Sbjct: 845 KEDSFDDDNSPST-SDGTRSSFPKSLPKEWEKHMLTLNNLAS--IIPPFVQAFLAKAIQS 901
Query: 150 KNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDI 209
+ + S G +I + + Q + + +I+ +++ + +
Sbjct: 902 ETLTLS-PGALQHIYDKYNISPIAIQQFLHFASQLNNRQLE---EIIAECEKLYLRNAEE 957
Query: 210 WT 211
WT
Sbjct: 958 WT 959
>gi|293557004|ref|ZP_06675564.1| conserved hypothetical protein [Enterococcus faecium E1039]
gi|291600824|gb|EFF31116.1| conserved hypothetical protein [Enterococcus faecium E1039]
Length = 138
Score = 37.6 bits (85), Expect = 1.4, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 5/130 (3%)
Query: 100 PKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGI 159
FL + + I ++ E +++ + L K++ + + I
Sbjct: 9 KAQFLE-IQKIFMKIQSAWEEETPEKARSCYTDKLFAENQKVLQKNKADGVRNHTKKITI 67
Query: 160 DDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPS 219
++ E + I I S KD LIS IW F +
Sbjct: 68 QEVGNYRQIHENSF-AIRIDFRCCDYSVDR-KDGRLISGSKIQRQYFSQIWYF--DFSEK 123
Query: 220 NPNWVLISTK 229
W +
Sbjct: 124 EKRWQADFIQ 133
>gi|282164810|ref|YP_003357195.1| hypothetical protein MCP_2140 [Methanocella paludicola SANAE]
gi|282157124|dbj|BAI62212.1| conserved hypothetical protein [Methanocella paludicola SANAE]
Length = 183
Score = 37.2 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 12/110 (10%), Positives = 35/110 (31%), Gaps = 3/110 (2%)
Query: 1 MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60
MV + +G ++ + A + ++ ++L +G+ +G E +
Sbjct: 1 MVEVFGMTGMIVLAVLALVAIYILMRL---MGRPSGEEGEQDEVPASPAEKRPAMISDED 57
Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNS 110
+ D++ L + + + ++F + R
Sbjct: 58 FIESYTGPMMEDALETLEEAVDSVRAGLEYYQRSAWEAAGEEFHSAVRGI 107
>gi|298346053|ref|YP_003718740.1| hypothetical protein HMPREF0573_10927 [Mobiluncus curtisii ATCC
43063]
gi|298236114|gb|ADI67246.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 43063]
Length = 396
Score = 37.2 bits (84), Expect = 1.8, Method: Composition-based stats.
Identities = 13/101 (12%), Positives = 28/101 (27%), Gaps = 4/101 (3%)
Query: 9 GDFLILLFAFITFFVFLQLRGVLGKK---TGNEKPFSGFFSGKYVFSKRDERGIITLGKG 65
F IL+ A I + + ++ K T +P + G+ F + +
Sbjct: 229 PLFSILIVAGIVILIVVLVKKSKAKANPVTQFGQPMNYGQPGQPQFGQPTQPQPFAQPGQ 288
Query: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTDF-DPKDFLN 105
+ + + + + F P F
Sbjct: 289 PQPFMQPGQPAPTQSFAQPSAGQPAVQTSQPQFGQPNPFAQ 329
>gi|149183746|ref|ZP_01862153.1| YqhP [Bacillus sp. SG-1]
gi|148848546|gb|EDL62789.1| YqhP [Bacillus sp. SG-1]
Length = 133
Score = 37.2 bits (84), Expect = 1.9, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 23/82 (28%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
IL+FA I ++ R V+ G +K F KR + + N
Sbjct: 46 ILIFAAIAGVIYFVFRKVMMGGKGKDKDQKAFLKAAKQSKKRYNKKTAAVKTKASAPNPF 105
Query: 73 SINELFPIGTRLNKVMRDIVSV 94
V+ +
Sbjct: 106 RKKSHRKKSQANLTVIEGKKNR 127
>gi|30686091|ref|NP_194050.2| CRK11 (CYSTEINE-RICH RLK11); kinase/ protein kinase [Arabidopsis
thaliana]
gi|152013437|sp|Q9ZP16|CRK11_ARATH RecName: Full=Cysteine-rich receptor-like protein kinase 11;
Short=Cysteine-rich RLK11; AltName: Full=Receptor-like
protein kinase 3; Flags: Precursor
gi|332659320|gb|AEE84720.1| cysteine-rich receptor-like protein kinase 11 [Arabidopsis
thaliana]
Length = 667
Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats.
Identities = 26/196 (13%), Positives = 57/196 (29%), Gaps = 9/196 (4%)
Query: 10 DFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
IL+ + F +F + + KT +E S S Y F + K +
Sbjct: 299 VIAILILLVLGFVLFRRRKSYQRTKTESESDISTTDSLVYDFKTIEAATNKFSTSNKLGE 358
Query: 70 NLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEA--------RNSYEAIVDSFFEG 121
+ + ++ + + ++F NEA RN +
Sbjct: 359 GGFGAVYKGKLSNGTDVAVKRLSKK-SGQGTREFRNEAVLVTKLQHRNLVRLLGFCLERE 417
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIV 181
+ I + V ++ F + + + ++G I+ + I +
Sbjct: 418 EQILIYEFVHNKSLDYFLFDPEKQSQLDWTRRYKIIGGIARGILYLHQDSRLKIIHRDLK 477
Query: 182 GQFISASYDKDNLLIS 197
I D + +
Sbjct: 478 ASNILLDADMNPKIAD 493
>gi|237721808|ref|ZP_04552289.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229448677|gb|EEO54468.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 508
Score = 36.8 bits (83), Expect = 2.3, Method: Composition-based stats.
Identities = 24/230 (10%), Positives = 71/230 (30%), Gaps = 19/230 (8%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKK--TGNEKPFSGFFSGKYVFSKRDERGII 60
+I + +++L A + + LR + G + + K + K F + +
Sbjct: 252 YIIIGLCVLVVILVAGLAILAAILLRFIAGNRKLKKSVKIANEHNELKTKFIQNISSQME 311
Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAI----VD 116
+ + + +++ + + D L + + V
Sbjct: 312 PTLNTLATSANELLQKAPQEASQMQSQVAALKKFSDDIQELSSLENSLTELYELGEINVG 371
Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
+F E + +++ + V N K+N++ ++ L+ + NA+ I
Sbjct: 372 TFCENVMDKVKEHIKIDVTPSVNAPKLQVKTNKEQLERILLYLLR----NAAFYTEQGRI 427
Query: 177 TIRI-----VGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP 221
++ + + IF ++ +++ +
Sbjct: 428 SLEFKKRGAHTHQFIVTDTGIGIPAEQQENIFKPFTEV----KDLTTGDG 473
>gi|323716895|gb|AAN39805.2| glycoprotein B [Saimiri sciureus lymphocryptovirus 2]
Length = 354
Score = 36.8 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 1/120 (0%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
IL+ A I VFL + + ++ ++P + G ++ +RG ++ K+
Sbjct: 230 ILIMAAIALVVFLVIYLLKQHRSMTQQPIQFLYPGIQSLTQSQQRGETSVTPVSKEQLDA 289
Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
+ L+ + K R + P+ L AR + + + + L+
Sbjct: 290 IMLALYEQTQQTQKQHRREATPPASSFPRKALEAARRRLP-LGKRKADEESEHRQPLLTH 348
>gi|265767422|ref|ZP_06095088.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263252727|gb|EEZ24239.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 517
Score = 36.8 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 25/226 (11%), Positives = 71/226 (31%), Gaps = 11/226 (4%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKK--TGNEKPFSGFFSGKYVFSKRDERGII 60
++ + +++L A + F V + LR + G + + + + K F + +
Sbjct: 261 YMIVGLCTLVVILIAGLIFVVIVLLRFIAGNRKLKKSVQIANEHNELKTQFIQNISAQME 320
Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR----NSYEAIVD 116
+ ++ ++ + + D L + E V+
Sbjct: 321 PTLDTLASSAAELSDKAPQQAQQMQGQVAALKKFSNDIQELSTLENSLTEPYEMKEINVN 380
Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
+F E + +++ V V N + K+N + ++ L+ + + +
Sbjct: 381 TFCEATMDKVKEFVQPEVSTVVNAAKLQIKTNPEQLERILIHLLKNAAEYTESGKIFLDF 440
Query: 177 TIR-IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP 221
R S + + +F +I +++ +
Sbjct: 441 KKRGAHTHQFIISDTGTGIPVEKQENLFKPFTEI----KDLTEGDG 482
>gi|196001951|ref|XP_002110843.1| hypothetical protein TRIADDRAFT_54172 [Trichoplax adhaerens]
gi|190586794|gb|EDV26847.1| hypothetical protein TRIADDRAFT_54172 [Trichoplax adhaerens]
Length = 302
Score = 36.4 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 40/135 (29%)
Query: 42 SGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPK 101
S + + + +N ++ ++ T++ V + DF
Sbjct: 56 SKHYFATTFNANLQHHRLFVNRTSPNLNNDNNRSDNPAGETKIVTVDLAGRVLGHDFSKD 115
Query: 102 DFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDD 161
FL A + + I D+ IE L+ +T ++++ L
Sbjct: 116 SFLEGANQAMKMICDAISTDDYSRIEDLLSPEAKASAKQCKTTLDRRGWDIRNILNYNGQ 175
Query: 162 MKIINASIEENTVYI 176
+ + + I
Sbjct: 176 PLTQIFRVFPSIITI 190
>gi|294651141|ref|ZP_06728476.1| taurine ABC superfamily ATP binding cassette transporter,
substrate-binding protein [Acinetobacter haemolyticus
ATCC 19194]
gi|292822973|gb|EFF81841.1| taurine ABC superfamily ATP binding cassette transporter,
substrate-binding protein [Acinetobacter haemolyticus
ATCC 19194]
Length = 346
Score = 36.4 bits (82), Expect = 3.0, Method: Composition-based stats.
Identities = 26/227 (11%), Positives = 63/227 (27%), Gaps = 22/227 (9%)
Query: 14 LLFAFITFFVFLQ----LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
++ I F+ Q + VL K N K + +K + +
Sbjct: 20 IVLVAIVAFIVYQNQKDVASVLSK---NNKAVVIAYQTGVDPTKVAQANGDYERDSGQAI 76
Query: 70 NLDSINELFPIGTRLNKVMRDI---------VSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
+ + L I + D + FL A+ + +
Sbjct: 77 QWRKFDAGSDVVNALASGDVVIGNIGSSPLAAAASRDLPIEVFLATAKLGGSEALVVSDK 136
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTR---KSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
+ + L+ + F + +++ S V I +++ + I
Sbjct: 137 SGIKTPKDLIGKTIAVPFVSTTHYSLLSALQHWDIEDSQVKIINLRPPEITAAWERGDID 196
Query: 178 IRIVGQFISASYDKDNLLISSDPEIFG---KVIDIWTFVRNIPPSNP 221
V + + +++ ++ D+W ++ NP
Sbjct: 197 ATYVWEPALSKVKASGHVLTDSKQVGEWGAPTYDLWVVRKDFAEKNP 243
>gi|218506541|ref|ZP_03504419.1| hypothetical protein RetlB5_02514 [Rhizobium etli Brasil 5]
Length = 22
Score = 36.4 bits (82), Expect = 3.0, Method: Composition-based stats.
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 212 FVRNIPPSNPNWVLISTKL 230
F R+ +PNW L++T+
Sbjct: 1 FARDTRSRDPNWKLVATES 19
>gi|327260776|ref|XP_003215209.1| PREDICTED: uncharacterized protein C2orf47 homolog,
mitochondrial-like [Anolis carolinensis]
Length = 257
Score = 36.4 bits (82), Expect = 3.1, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 48/152 (31%), Gaps = 18/152 (11%)
Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN--- 151
+F +F A+ ++ + + K +E+LV + Q + LS N ++
Sbjct: 101 DQEFSIHEFTEGAKQAFAHVSRLIAQCKYDLLEELVSKEMVQILKEKLSLLSENHRSALA 160
Query: 152 ---VKSSLVGIDDMKIINASIEENTVYITIRI----VGQFISASYDKDN--LLISSDPEI 202
+ D+ I V I +R + D ++ D E
Sbjct: 161 ADMDEIMYTTAGDVGIYYDDSGRKFVSILMRFWYLTSADLPDETPDGTKVFQVVFGD-EA 219
Query: 203 FGKVIDIWT----FVRNIPPS-NPNWVLISTK 229
+ + T F R P+W + +
Sbjct: 220 SKETKRLLTANYEFRREFTQGVKPDWTITRIE 251
>gi|169629386|ref|YP_001703035.1| putative membrane protein, MmpS [Mycobacterium abscessus ATCC
19977]
gi|169241353|emb|CAM62381.1| Putative membrane protein, MmpS [Mycobacterium abscessus]
Length = 133
Score = 36.4 bits (82), Expect = 3.1, Method: Composition-based stats.
Identities = 9/79 (11%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKK-D 69
+++L I F ++RG+ G ++ P + + + + +
Sbjct: 1 MVMVLVLVIAGFAVWRIRGIFGS---HQLPTYAGSMTDDKNNSKPKHVLYEIFGPPGTIA 57
Query: 70 NLDSINELFPIGTRLNKVM 88
+++ I++ V+
Sbjct: 58 DINYIDKEGEPHQINGAVL 76
>gi|116511408|ref|YP_808624.1| hypothetical protein LACR_0635 [Lactococcus lactis subsp. cremoris
SK11]
gi|116107062|gb|ABJ72202.1| hypothetical protein LACR_0635 [Lactococcus lactis subsp. cremoris
SK11]
Length = 158
Score = 36.4 bits (82), Expect = 3.2, Method: Composition-based stats.
Identities = 14/125 (11%), Positives = 40/125 (32%), Gaps = 2/125 (1%)
Query: 89 RDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN 148
+ + E + + +++ + + ++ ++Y+ L ++
Sbjct: 20 KRDYHQEKTINDPALAQEIEEIFLNVQEAWDKQDLQSLSPFYGDQLYEKHQKVLEKMRNK 79
Query: 149 EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISSDPEIFGKVID 208
+ + I D I++N + + V S D +IS + + +
Sbjct: 80 G-QINHTRSAILDGITRYKEIKDNQFEVDLYFVAIDYLVSID-SGQIISGNNQYRREFKQ 137
Query: 209 IWTFV 213
W F
Sbjct: 138 RWNFS 142
>gi|154319085|ref|XP_001558860.1| hypothetical protein BC1G_02494 [Botryotinia fuckeliana B05.10]
gi|150856925|gb|EDN32117.1| hypothetical protein BC1G_02494 [Botryotinia fuckeliana B05.10]
Length = 496
Score = 36.4 bits (82), Expect = 3.2, Method: Composition-based stats.
Identities = 17/213 (7%), Positives = 54/213 (25%), Gaps = 31/213 (14%)
Query: 1 MVFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGII 60
+++ + G I++F I + ++L + EK + ++ G +
Sbjct: 181 IMYAGLGYGSLFIVMFILIAIDIVMRLFMI-------EKKVAARLKKDKTVAETHTYGTL 233
Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
+ T ++ + D K ++ +
Sbjct: 234 QQSVDNAIFEQQYPSTPSTSNTASEPLLVSNQNQPPPADNK------KHPIALVTLLKSP 287
Query: 121 GKVHAIEK-LVDSRVYQDFNDSLSTRKSNEKNVKSS-------------LVGIDDMKIIN 166
+ V + F+ +L + N S+ + ++ +
Sbjct: 288 RIWADLYGVWVTVFLLASFDAALPIFVQRKFNWDSTGAGLIFLAITFPIFLAPIAGRLSD 347
Query: 167 ASIEE----NTVYITIRIVGQFISASYDKDNLL 195
+ I+ + + + +
Sbjct: 348 VWPSRWLTASYFIISAVFTVLLVLIHRNSTDQI 380
>gi|163915247|ref|NP_001106589.1| hypothetical protein LOC100127804 [Xenopus (Silurana) tropicalis]
gi|160773565|gb|AAI55415.1| LOC100127804 protein [Xenopus (Silurana) tropicalis]
Length = 304
Score = 36.4 bits (82), Expect = 3.4, Method: Composition-based stats.
Identities = 20/152 (13%), Positives = 56/152 (36%), Gaps = 18/152 (11%)
Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN--- 151
+F+ ++F + A+ ++ + + K A++ L+ + +D + S+ N +N
Sbjct: 148 DREFNIEEFTDGAKQAFTLVSKLLSQCKFDALQNLISGELLEDIKEKCSSLSDNHRNALA 207
Query: 152 -VKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL--------ISSDPEI 202
++ + + +++I + +++ + D+ L I D
Sbjct: 208 AHLDEIMYTTTGDVAIYYDDNGRKFVSILMRFWYLTCAELPDDSLEGTKVFQFIMGDENT 267
Query: 203 FGKVIDIWT----FVRNIPPS-NPNWVLISTK 229
+ T F R P+W++ +
Sbjct: 268 -KNTKRLLTANYEFRREFTQGVTPDWIITRIE 298
>gi|169628228|ref|YP_001701877.1| membrane protein MmpS [Mycobacterium abscessus ATCC 19977]
gi|169240195|emb|CAM61223.1| Probable membrane protein, MmpS [Mycobacterium abscessus]
Length = 133
Score = 36.4 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 8/77 (10%), Positives = 25/77 (32%), Gaps = 3/77 (3%)
Query: 11 FLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
+++L I F ++RG+ G ++ P + + + + +
Sbjct: 1 MVMVLVLVIAGFAVWRIRGIFGS---HQLPTYAGSMTDDKNNSKPKHVLYEIFGPPGTIA 57
Query: 71 LDSINELFPIGTRLNKV 87
+ + ++N
Sbjct: 58 DINYIDKEGEPHQINGA 74
>gi|226952052|ref|ZP_03822516.1| ABC taurine transport system, periplasmic component [Acinetobacter
sp. ATCC 27244]
gi|226837209|gb|EEH69592.1| ABC taurine transport system, periplasmic component [Acinetobacter
sp. ATCC 27244]
Length = 340
Score = 36.4 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 26/227 (11%), Positives = 63/227 (27%), Gaps = 22/227 (9%)
Query: 14 LLFAFITFFVFLQ----LRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKD 69
++ I F+ Q + VL K N K + +K + +
Sbjct: 14 IVLVAIVAFIVYQNQKDVASVLSK---NNKAVVIAYQTGVDPTKVAQANGDYERDSGQAI 70
Query: 70 NLDSINELFPIGTRLNKVMRDI---------VSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
+ + L I + D + FL A+ + +
Sbjct: 71 QWRKFDAGSDVVNALASGDVVIGNIGSSPLAAAASRDLPIEVFLVTAKLGGSEALVVSDK 130
Query: 121 GKVHAIEKLVDSRVYQDFNDSLSTR---KSNEKNVKSSLVGIDDMKIINASIEENTVYIT 177
+ + L+ + F + +++ S V I +++ + I
Sbjct: 131 SGIKTPKDLIGKTIAVPFVSTTHYSLLSALQHWDIEDSQVKIINLRPPEITAAWERGDID 190
Query: 178 IRIVGQFISASYDKDNLLISSDPEIFG---KVIDIWTFVRNIPPSNP 221
V + + +++ ++ D+W ++ NP
Sbjct: 191 ATYVWEPALSKVKASGHVLTDSKQVGEWGAPTYDLWVVRKDFAEKNP 237
>gi|114563245|ref|YP_750758.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Shewanella frigidimarina NCIMB 400]
gi|114334538|gb|ABI71920.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
[Shewanella frigidimarina NCIMB 400]
Length = 912
Score = 36.4 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 20/166 (12%), Positives = 46/166 (27%), Gaps = 4/166 (2%)
Query: 12 LILLFAFITFFVFLQLR-GVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDN 70
++ FA + + L L +L + N+ + + + + +
Sbjct: 282 DLIEFAAVAGVLILLLSVWILQARRNNQ--ALTIANINTANANMALNELKNNLEKNVLER 339
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+ L + + D ++ D F+ S I+ G KL+
Sbjct: 340 TLQLTISENRYRGLVESLEDEY-IFYQHDTDGFVQYVSPSVTHILGLTITGFGEYYYKLL 398
Query: 131 DSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
R N + + + I D + + E +
Sbjct: 399 TDNPKNQLISGYIQRIINGEKLAPFEIEIFDTNGVIHTFEVLERPM 444
>gi|239995297|ref|ZP_04715821.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii ATCC
27126]
Length = 472
Score = 36.1 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 26/200 (13%), Positives = 59/200 (29%), Gaps = 20/200 (10%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
I+L A I FVF+ L V T E+ S ++ D++ + L
Sbjct: 253 IVLLAMIVGFVFIILHMVSMTGTLAERTLSTLYNDIKNRLNSDDKTSLRLDS-------- 304
Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDS 132
+ + + ++ T+ + + N E++ D + L+ +
Sbjct: 305 --DVEAQELADIREAFDKLIWDLTEVSLSN--EQFSNVLESMGDMLVVVDQDK-QTLLSN 359
Query: 133 RVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD 192
+ + DF K+ + + R V ++ D +
Sbjct: 360 KRFDDFCHDQYGEKNGILKFIMQKLASSQSNELTHFSVSTGQE---RFVHWTKTSLADAN 416
Query: 193 NLLIS----SDPEIFGKVID 208
+ E + ++
Sbjct: 417 GNIRGDIYVGSDETEQRSLE 436
>gi|323716898|gb|AAN39806.2| glycoprotein B [Pithecia pithecia lymphocryptovirus 1]
Length = 356
Score = 36.1 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 43/128 (33%), Gaps = 8/128 (6%)
Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKY---VFSKRDERGIITLGKGKKKDN 70
L+ A I +FL + V +T ++P + RD + + K +
Sbjct: 234 LILAGIVAVIFLVIFLVRQNRTITQQPMQFLYPEIQSLTQNQGRDRNAVAPISKEQLDAI 293
Query: 71 LDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLV 130
+ + E ++ D + L A++ + + + + ++ L+
Sbjct: 294 MLAWYEQMQGRSQAKSKPSDPATSLPSRA----LEAAKSRF-QLRKRPGKDRGSDLKPLL 348
Query: 131 DSRVYQDF 138
D +F
Sbjct: 349 DGTEETEF 356
>gi|108804853|ref|YP_644790.1| inner-membrane translocator [Rubrobacter xylanophilus DSM 9941]
gi|108766096|gb|ABG04978.1| inner-membrane translocator [Rubrobacter xylanophilus DSM 9941]
Length = 321
Score = 36.1 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 2 VFIKMDSGDF-----LILLFAFITFFVFLQLRGVLGKKTGNEK 39
V M I++FA + + + RG+LG ++ +
Sbjct: 276 VIAAMSDQYIGVRWTEIMIFAVLILVIVFRPRGLLGDRSAVQG 318
>gi|300866068|ref|ZP_07110798.1| Adenylate cyclase [Oscillatoria sp. PCC 6506]
gi|300335929|emb|CBN55956.1| Adenylate cyclase [Oscillatoria sp. PCC 6506]
Length = 489
Score = 36.1 bits (81), Expect = 4.0, Method: Composition-based stats.
Identities = 22/202 (10%), Positives = 54/202 (26%), Gaps = 7/202 (3%)
Query: 14 LLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDS 73
L+ A I+F L L + + + ++ + + + +K D L
Sbjct: 226 LILAGISFLGITGL--TLAVRRLRQDAKELERRVRERTAQLQQANEEVVKEQEKSDRLLL 283
Query: 74 INELFPIGTRLNKVMRDIVSVYTDF-----DPKDFLNEARNSYEAIVDSFFEGKVHAIEK 128
PI T+L I + + D F ++ + A ++
Sbjct: 284 SILPEPIATKLKNGQSSIADGFAEVTILFADIVGFTKLSQQVSPEELVKLLNEIFSAFDQ 343
Query: 129 LVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISAS 188
L + + + + I +++ + + +
Sbjct: 344 LTGRHGLEKIKTIGDAYMVVGGLPEPRNDHAESIAEIALDMQQEVAHFNAKYNMEINIRI 403
Query: 189 YDKDNLLISSDPEIFGKVIDIW 210
I+ + D+W
Sbjct: 404 GINTGAAIAGVIGTKKFIYDLW 425
>gi|294498202|ref|YP_003561902.1| hypothetical protein BMQ_1436 [Bacillus megaterium QM B1551]
gi|294348139|gb|ADE68468.1| conserved membrane protein [Bacillus megaterium QM B1551]
Length = 242
Score = 36.1 bits (81), Expect = 4.2, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 48/115 (41%), Gaps = 3/115 (2%)
Query: 16 FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT---LGKGKKKDNLD 72
F I F++ LR + +K E + F+ + S R ++T LG + +D++
Sbjct: 78 FLVIALFLYFLLRFIQSRKHPVEFRPTDEFTQQPNQSLVQVRPVLTNKLLGSQRTEDSVY 137
Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
+++ + V+ +V D F+ +A + + ++ E V+ +
Sbjct: 138 EWDDINIQSVWGDIVVDLSNTVLPKGDAVIFIRQAFGNIKVLIPYETEVSVNHSK 192
>gi|170079470|ref|YP_001736106.1| type I site-specific restriction-modification system, R
(restriction) subunit [Synechococcus sp. PCC 7002]
gi|169887139|gb|ACB00851.1| type I site-specific restriction-modification system, R
(restriction) subunit [Synechococcus sp. PCC 7002]
Length = 768
Score = 36.1 bits (81), Expect = 4.4, Method: Composition-based stats.
Identities = 18/150 (12%), Positives = 43/150 (28%), Gaps = 9/150 (6%)
Query: 67 KKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDS-------FF 119
+ ++ G+ + + ++ D D F + A + ++ I+
Sbjct: 240 DPKEIKKKGKVPKNGSLFFSIFQTFMTTKGDKDFAHFYDYAPDFFDFIIIDECHRGGAND 299
Query: 120 EGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEE-NTVYITI 178
E I + V + R N K + + + T + +
Sbjct: 300 ESTWRKILEYFSPAVQLGL-TATPKRDVNGDTYKYFGEPLYTYSLKEGINDGYLTPFKVV 358
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVID 208
+ YD D+ +I D + +
Sbjct: 359 QFTTTLDEYLYDPDDDVIEGDIDEARTYEE 388
>gi|291391992|ref|XP_002712422.1| PREDICTED: juvenile hormone esterase binding protein 29-like
[Oryctolagus cuniculus]
Length = 292
Score = 35.7 bits (80), Expect = 4.6, Method: Composition-based stats.
Identities = 21/153 (13%), Positives = 46/153 (30%), Gaps = 21/153 (13%)
Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN--- 151
+F +F A+ ++ + + K +E+LV V + +++ N K+
Sbjct: 137 DKEFSIAEFSEGAKQAFAYVSKLLSQCKFDLLEELVAKEVLHVLKEKVTSLPDNHKSALA 196
Query: 152 ---VKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNL------LISSDPEI 202
+ D+ I V I + + ++ + D +
Sbjct: 197 ADIDEIVYTSTGDISIYYDEKGRKFVNILMCFWYLTSANVPNETIRGASVFQVKLGDQNV 256
Query: 203 FGKV-----IDIWTFVRNIPPS-NPNWVLISTK 229
K + F R PNW + +
Sbjct: 257 ETKQLLSASYE---FQREFTQGVKPNWTIARIE 286
>gi|194333722|ref|YP_002015582.1| F0F1 ATP synthase subunit A [Prosthecochloris aestuarii DSM 271]
gi|223634777|sp|B4S798|ATP61_PROA2 RecName: Full=ATP synthase subunit a 1; AltName: Full=ATP synthase
F0 sector subunit a 1; AltName: Full=F-ATPase subunit 6
1
gi|194311540|gb|ACF45935.1| alternate F1F0 ATPase, F0 subunit A [Prosthecochloris aestuarii DSM
271]
Length = 223
Score = 35.7 bits (80), Expect = 4.7, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTG 36
+F M SG +I + I F L VLG TG
Sbjct: 165 LFGNMMSGVMIIGILLGIAPLFFPVLMSVLGLLTG 199
>gi|301165089|emb|CBW24657.1| putative two-component regulator sensor histidine kinase
transcriptional regulator [Bacteroides fragilis 638R]
Length = 517
Score = 35.7 bits (80), Expect = 6.0, Method: Composition-based stats.
Identities = 24/226 (10%), Positives = 70/226 (30%), Gaps = 11/226 (4%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKK--TGNEKPFSGFFSGKYVFSKRDERGII 60
++ + +++L A + F + LR + G + + + + K F + +
Sbjct: 261 YMIVGLCTLVVILIAGLIFVAIVLLRFIAGNRKLKKSVQIANEHNELKTQFIQNISAQME 320
Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR----NSYEAIVD 116
+ ++ ++ + + D L + E V+
Sbjct: 321 PTLDTLASSAAELSDKAPQQAQQMQGQVAALKKFSNDIQELSTLENSLTEPYEMKEINVN 380
Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
+F E + +++ V V N + K+N + ++ L+ + + +
Sbjct: 381 TFCEATMDKVKEFVQPEVSTVVNAAKLQIKTNPEQLERILIHLLKNAAEYTESGKIFLDF 440
Query: 177 TIR-IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP 221
R S + + +F +I +++ +
Sbjct: 441 KKRGAHTHQFIISDTGTGIPVEKQENLFKPFTEI----KDLTEGDG 482
>gi|221054233|ref|XP_002261864.1| sec1 family domain containing protein [Plasmodium knowlesi strain
H]
gi|193808324|emb|CAQ39027.1| sec1 family domain containing protein, putative [Plasmodium
knowlesi strain H]
Length = 653
Score = 35.3 bits (79), Expect = 6.2, Method: Composition-based stats.
Identities = 11/122 (9%), Positives = 30/122 (24%), Gaps = 4/122 (3%)
Query: 81 GTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE----KLVDSRVYQ 136
G LN + S + + ++ + + + IV + V
Sbjct: 67 GVTLNLNLHRQRSNIPEVNAVYLIDNNKENIDKIVKDMCNNMYGSYYINFISYVCEENLG 126
Query: 137 DFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLI 196
F + K + + + + +++ N D + +
Sbjct: 127 YFANECVKYNVASHVSKITDRYLKFVSLSSSTFSLNIPNCFKIFHTNEDQVIKDVMDRIT 186
Query: 197 SS 198
Sbjct: 187 EG 188
>gi|154308765|ref|XP_001553718.1| hypothetical protein BC1G_07805 [Botryotinia fuckeliana B05.10]
gi|150852756|gb|EDN27948.1| hypothetical protein BC1G_07805 [Botryotinia fuckeliana B05.10]
Length = 458
Score = 35.3 bits (79), Expect = 6.2, Method: Composition-based stats.
Identities = 14/102 (13%), Positives = 31/102 (30%)
Query: 25 LQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRL 84
+LR V G+K N P + + + + + + P T
Sbjct: 112 WRLRSVPGQKRLNGAPPASLSGERPADATEASQTSTDAAAQPAIETRGAWGTSIPQATEE 171
Query: 85 NKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAI 126
+ V + + +EA+++ + D+ E
Sbjct: 172 STVETQPIEEALEATHISTADEAKSAEKPAEDAVTEESTKDG 213
>gi|157112102|ref|XP_001651795.1| reticulon/nogo receptor [Aedes aegypti]
gi|108878188|gb|EAT42413.1| reticulon/nogo receptor [Aedes aegypti]
Length = 368
Score = 35.3 bits (79), Expect = 6.2, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 182 GQFISASYDKDNLLI----SSDPEIFGKVIDIWTFVRNIPPSNPNWVLISTKL 230
S D++ ++ DP + + + W F +++ +PNW+ T+
Sbjct: 51 SLLNLCSGDREMKIVCHCSPDDPHVKAQKANCWIFSKDLSRKDPNWLAFQTQT 103
>gi|53715633|ref|YP_101625.1| putative two-component system sensor histidine kinase [Bacteroides
fragilis YCH46]
gi|60683575|ref|YP_213719.1| putative two-component regulator sensor histidine kinase
transcriptional regulator [Bacteroides fragilis NCTC
9343]
gi|52218498|dbj|BAD51091.1| putative two-component system sensor histidine kinase [Bacteroides
fragilis YCH46]
gi|60495009|emb|CAH09827.1| putative two-component regulator sensor histidine kinase
transcriptional regulator [Bacteroides fragilis NCTC
9343]
Length = 517
Score = 35.3 bits (79), Expect = 6.2, Method: Composition-based stats.
Identities = 24/226 (10%), Positives = 70/226 (30%), Gaps = 11/226 (4%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKK--TGNEKPFSGFFSGKYVFSKRDERGII 60
++ + +++L A + F + LR + G + + + + K F + +
Sbjct: 261 YMIVGLCTLVVILIAGLIFVAIVLLRFIAGNRKLKKSVQIANEHNELKTQFIQNISAQME 320
Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR----NSYEAIVD 116
+ ++ ++ + + D L + E V+
Sbjct: 321 PTLDTLASSAAELSDKAPQQAQQMQGQVAALKKFSNDIQELSTLENSLTEPYEMKEINVN 380
Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
+F E + +++ V V N + K+N + ++ L+ + + +
Sbjct: 381 TFCEATMDKVKEFVQPEVSTVVNAAKLQIKTNPEQLERILIHLLKNAAEYTESGKIFLDF 440
Query: 177 TIR-IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP 221
R S + + +F +I +++ +
Sbjct: 441 KKRGAHTHQFIISDTGTGIPVEKQENLFKPFTEI----KDLTEGDG 482
>gi|320354675|ref|YP_004196014.1| AAA ATPase [Desulfobulbus propionicus DSM 2032]
gi|320123177|gb|ADW18723.1| AAA ATPase [Desulfobulbus propionicus DSM 2032]
Length = 471
Score = 35.3 bits (79), Expect = 6.3, Method: Composition-based stats.
Identities = 17/155 (10%), Positives = 38/155 (24%), Gaps = 4/155 (2%)
Query: 2 VFIKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT 61
++ + S +I A + + + GVL TG E+ G K + R
Sbjct: 278 IYELLSSNRLVIGALAGVAA--MMLVIGVLLSGTGQEESAGGEPVVKTAATARPASAPGV 335
Query: 62 LGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEG 121
G + ++ + + P + + +L I
Sbjct: 336 REGGGTEQAVEDVLQPPPAPQEIRDGDKLYRERL--GASASWLAGIYKGGFTIQLMMLVS 393
Query: 122 KVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL 156
+ +K ++
Sbjct: 394 DQAQSSIATTLTEDDYYQVREQLYVLRKKTSPPTI 428
>gi|253566554|ref|ZP_04844007.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|251944726|gb|EES85201.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
Length = 517
Score = 35.3 bits (79), Expect = 6.3, Method: Composition-based stats.
Identities = 24/226 (10%), Positives = 70/226 (30%), Gaps = 11/226 (4%)
Query: 3 FIKMDSGDFLILLFAFITFFVFLQLRGVLGKK--TGNEKPFSGFFSGKYVFSKRDERGII 60
++ + +++L A + F + LR + G + + + + K F + +
Sbjct: 261 YMIVGLCTLVVILIAGLIFVAIVLLRFIAGNRKLKKSVQIANEHNELKTQFIQNISAQME 320
Query: 61 TLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEAR----NSYEAIVD 116
+ ++ ++ + + D L + E V+
Sbjct: 321 PTLDTLASSAAELSDKAPQQAQQMQGQVAALKKFSNDIQELSTLENSLTEPYEMKEINVN 380
Query: 117 SFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYI 176
+F E + +++ V V N + K+N + ++ L+ + + +
Sbjct: 381 TFCEATMDKVKEFVQPEVSTVVNAAKLQIKTNPEQLERILIHLLKNAAEYTESGKIFLDF 440
Query: 177 TIR-IVGQFISASYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNP 221
R S + + +F +I +++ +
Sbjct: 441 KKRGAHTHQFIISDTGTGIPVEKQENLFKPFTEI----KDLTEGDG 482
>gi|149918520|ref|ZP_01907009.1| hypothetical protein PPSIR1_20314 [Plesiocystis pacifica SIR-1]
gi|149820596|gb|EDM80008.1| hypothetical protein PPSIR1_20314 [Plesiocystis pacifica SIR-1]
Length = 574
Score = 35.3 bits (79), Expect = 6.8, Method: Composition-based stats.
Identities = 8/99 (8%), Positives = 24/99 (24%), Gaps = 6/99 (6%)
Query: 4 IKMDSGDFLILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLG 63
M ++LFA + ++L+ ++ E + +
Sbjct: 7 AIMMFSFAGMVLFAGVAVVLYLR------QQQLREAAPPPLPVTPKPAAPQASPIEEPTE 60
Query: 64 KGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKD 102
+ + + + + DP+
Sbjct: 61 PTEFVPARHGGPDPDAPRKLGESGTELVPAPHGPEDPEA 99
>gi|311103567|ref|YP_003976420.1| thiol:disulfide interchange protein DsbC [Achromobacter
xylosoxidans A8]
gi|310758256|gb|ADP13705.1| thiol:disulfide interchange protein DsbC [Achromobacter
xylosoxidans A8]
Length = 265
Score = 35.3 bits (79), Expect = 7.6, Method: Composition-based stats.
Identities = 26/196 (13%), Positives = 56/196 (28%), Gaps = 13/196 (6%)
Query: 44 FFSGKYVFSKRDERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDF 103
S ++G+ K D S ++ P + V + D
Sbjct: 19 GMSAGAAAQGDKSVSTQSVGQPGKGDKSYSTTQVAPADPVADAVKDRFRQRFDGMDVTAV 78
Query: 104 LNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVKSSL------V 157
+E + + +++ + TR++ E+ S +
Sbjct: 79 RRTPYGLFEVQLGMDLIYTDEKVTWVMEGPLIDAMTRRDVTRETQERLSAVSFDQLPLDL 138
Query: 158 GIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLLISS------DPEIFGKVIDIWT 211
I +K + Q D DN+ + + P+ KV D+W
Sbjct: 139 AIKQVKGDGSRKVAIFEDPNCGYCKQLRKTLEDVDNITVYTFLYPILSPDSKDKVRDVWC 198
Query: 212 FVRNIPPSNPNWVLIS 227
++ + +W+L
Sbjct: 199 -SKDPGAAWDDWMLRG 213
>gi|242785081|ref|XP_002480519.1| capsule-associated protein CAP1, putative [Talaromyces stipitatus
ATCC 10500]
gi|218720666|gb|EED20085.1| capsule-associated protein CAP1, putative [Talaromyces stipitatus
ATCC 10500]
Length = 590
Score = 35.3 bits (79), Expect = 7.7, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 29/113 (25%), Gaps = 3/113 (2%)
Query: 11 FLILLFAFITFFVFLQLRGV---LGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKK 67
+L F I F LR G K EK F + D I L
Sbjct: 7 LYLLCFLTIAAFTLFFLRSPETDTGPKAPFEKSLPADFENLLQPTTEDSHPIARLINDAN 66
Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFE 120
D + T + R + + A+ ++D +
Sbjct: 67 TDFDAKLARQSKSLTEAVEEYRRRYGMPPPPHFDKWFAFAKKRGVQLIDEYDT 119
>gi|82617538|ref|NP_001032303.1| hypothetical protein LOC552941 [Danio rerio]
gi|81097772|gb|AAI09475.1| Zgc:123096 [Danio rerio]
gi|157423611|gb|AAI53656.1| Zgc:123096 protein [Danio rerio]
Length = 243
Score = 34.9 bits (78), Expect = 9.0, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 45/153 (29%), Gaps = 18/153 (11%)
Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL------STRKSN 148
+F ++F+ A ++ + + + A+E LV + + R +
Sbjct: 85 DKEFSIEEFMEGAIQAFSHVSRLLSQCQFEALEGLVAKDLIKKLEGKCAHLPLSHQRALS 144
Query: 149 EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-----------NLLIS 197
+ + D+ I E V I +R + D+
Sbjct: 145 AEPDDIMYMTAGDVGIYYDDSERKFVSILMRFWYLTSAKFPDESVDGAKVFQVAIGDERE 204
Query: 198 SDPEIFGKVIDIWTFVRNIPPS-NPNWVLISTK 229
E + + F R P+W++ +
Sbjct: 205 KQTETKRLLTANYEFQREFTEGVTPDWIITRIE 237
>gi|86607459|ref|YP_476222.1| serine/threonine protein kinase [Synechococcus sp. JA-3-3Ab]
gi|86556001|gb|ABD00959.1| serine/threonine protein kinase [Synechococcus sp. JA-3-3Ab]
Length = 530
Score = 34.9 bits (78), Expect = 9.1, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 21/68 (30%)
Query: 13 ILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNLD 72
I L A I F LR +L TG E+P + + ++
Sbjct: 354 IALLAAIAGSTFWGLRLLLDPGTGMERPPAVPLPPATDGQQAIPEPLLDWLLRDPAGEPA 413
Query: 73 SINELFPI 80
++ P
Sbjct: 414 FEDDPDPA 421
>gi|295703552|ref|YP_003596627.1| hypothetical protein BMD_1417 [Bacillus megaterium DSM 319]
gi|294801211|gb|ADF38277.1| conserved membrane protein [Bacillus megaterium DSM 319]
Length = 242
Score = 34.9 bits (78), Expect = 9.8, Method: Composition-based stats.
Identities = 20/115 (17%), Positives = 47/115 (40%), Gaps = 3/115 (2%)
Query: 16 FAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIIT---LGKGKKKDNLD 72
F I F++ LR + +K E + F+ + S R ++T LG + +D++
Sbjct: 78 FLVIALFLYFLLRFIQSRKHPVEFRPTDEFTQQPNQSLVQVRPVLTNKLLGSQRTEDSVY 137
Query: 73 SINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIE 127
+++ + V+ +V D F+ + + + ++ E V+ +
Sbjct: 138 EWDDINIQSVWGDIVVDLSNTVLPKGDAVIFIRQVFGNIKVLIPYETEVSVNHSK 192
>gi|76779894|gb|AAI06212.1| LOC733342 protein [Xenopus laevis]
Length = 228
Score = 34.9 bits (78), Expect = 9.8, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 57/152 (37%), Gaps = 18/152 (11%)
Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKN--- 151
+F ++F + A+ ++ + + K A++ L+ S + +D + S+ N +N
Sbjct: 72 DREFTIEEFTDGAKQAFTLVSKLLSQCKFDALQNLISSELLEDIKEKCSSISDNHRNALA 131
Query: 152 -VKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKDNLL--------ISSDPEI 202
++ I + + +++I + +++ + D+ L I D
Sbjct: 132 AHSDEIMYITTGNVAIYYDDNGRKFVSILMRFWYMTCAELPDDSLEGTKVFQFIMGDETT 191
Query: 203 FGKVIDIWT----FVRNIPPS-NPNWVLISTK 229
+ T F R P+W++ +
Sbjct: 192 -KNTKRLLTANYEFRREFTQGVKPDWIITRIE 222
>gi|72153688|ref|XP_792216.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
gi|115703999|ref|XP_001203219.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
Length = 210
Score = 34.9 bits (78), Expect = 9.8, Method: Composition-based stats.
Identities = 11/98 (11%), Positives = 31/98 (31%), Gaps = 8/98 (8%)
Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSN------ 148
DF +F A+ + I + EG + +E L+ ++ Q+ ++
Sbjct: 41 DPDFSIDEFTQGAKQALVTISEEIAEGTLENLEDLLSPKLLQEIKNTCRGFSLKEISSLS 100
Query: 149 --EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQF 184
K++ + + + + + +
Sbjct: 101 ISGKDILHTFPHDIAIHYDDKGGKFLFILMKFWCHSTQ 138
>gi|50417024|gb|AAH77162.1| Zgc:123096 protein [Danio rerio]
Length = 236
Score = 34.9 bits (78), Expect = 9.9, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 45/153 (29%), Gaps = 18/153 (11%)
Query: 95 YTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL------STRKSN 148
+F ++F+ A ++ + + + A+E LV + + R +
Sbjct: 78 DKEFSIEEFMEGAIQAFSHVSRLLSQCQFEALEGLVAKDLIKKLEGKCAHLPLSHQRALS 137
Query: 149 EKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISASYDKD-----------NLLIS 197
+ + D+ I E V I +R + D+
Sbjct: 138 AEPDDIMYMTAGDVGIYYDDSERKFVSILMRFWYLTSAKFPDESVDGAKVFQVAIGDERE 197
Query: 198 SDPEIFGKVIDIWTFVRNIPPS-NPNWVLISTK 229
E + + F R P+W++ +
Sbjct: 198 KQTETKRLLTANYEFQREFTEGVTPDWIITRIE 230
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.311 0.112 0.299
Lambda K H
0.267 0.0346 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,439,084,923
Number of Sequences: 14124377
Number of extensions: 49144800
Number of successful extensions: 278922
Number of sequences better than 10.0: 1132
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 321
Number of HSP's that attempted gapping in prelim test: 277049
Number of HSP's gapped (non-prelim): 1227
length of query: 232
length of database: 4,842,793,630
effective HSP length: 134
effective length of query: 98
effective length of database: 2,950,127,112
effective search space: 289112456976
effective search space used: 289112456976
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 78 (34.9 bits)