RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780815|ref|YP_003065228.1| hypothetical protein
CLIBASIA_03530 [Candidatus Liberibacter asiaticus str. psy62]
(232 letters)
>gnl|CDD|178148 PLN02533, PLN02533, probable purple acid phosphatase.
Length = 427
Score = 31.6 bits (71), Expect = 0.16
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 111 YEAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
Y+A VD F G VHA E+ RVYQ D
Sbjct: 319 YKARVDLVFAGHVHAYERF--DRVYQGKTD 346
>gnl|CDD|178518 PLN02930, PLN02930, CDP-diacylglycerol-serine
O-phosphatidyltransferase.
Length = 353
Score = 28.6 bits (64), Expect = 1.4
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 16/66 (24%)
Query: 179 RIVGQFISASYDKDNLLISSDPEIFGKVIDI-------------WTFVRNIPPSNPNWVL 225
R +GQF A +DKD P F +V+ + F IPP NP L
Sbjct: 236 RTLGQFTPAQWDKDEWHPLQGPWRFLQVLFLCVVFLTVELNTFFLKFCLWIPPRNP---L 292
Query: 226 ISTKLG 231
I +L
Sbjct: 293 IVYRLI 298
>gnl|CDD|183556 PRK12493, PRK12493, magnesium chelatase subunit H; Provisional.
Length = 1310
Score = 28.0 bits (63), Expect = 1.9
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 14/43 (32%)
Query: 111 YEAIVDSFFEGKVHAIEK-------------LVDSRVYQDFND 140
YE ++ +EG V IEK VD+ VY++ N+
Sbjct: 1205 YEGMLKHGYEG-VREIEKRLNNTYGWSATAGAVDNWVYEEVNE 1246
>gnl|CDD|151059 pfam10499, Pmp24, Peroxisomal membrane protein 24. Peroxisomes
are single membrane bound organelles, present in
practically all eukaryotic cells, and involved in a
variety of metabolic pathways; the deduced protein is
extremely basic, a characteristic of many other
peroxisomal intrinsic membrane proteins. They carry two
short stretches of hydrophobic residues shown to be
necessary for the correct targeting of these proteins.
A sequence with these characteristics is found in human
PMP24 (amino acid residues 16-30). However, in the
absence of experimental data, the involvement of this
domain in the targeting of PMP24 remains to be proved.
PMP24 was known as Pmp27.
Length = 181
Score = 27.6 bits (62), Expect = 2.5
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 16 FAFITFFVFLQLRGVLGKKTGN-EKPFSGFFSGKYVFSKR 54
FAFI + L LR + G K G +GF G VF +R
Sbjct: 56 FAFIYKSLRLLLRNLGGGKEGGWHSFLAGFLGGYLVFGER 95
>gnl|CDD|178951 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 27.4 bits (62), Expect = 3.6
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 159 IDDMKIINASIEENTVYITIR-IVGQFISASYDKD 192
IDD KII + EE +I+ + ++I A++ +D
Sbjct: 71 IDD-KIIKRANEEG---ESIKELTERYI-AAFHED 100
>gnl|CDD|180265 PRK05802, PRK05802, hypothetical protein; Provisional.
Length = 320
Score = 27.2 bits (61), Expect = 4.0
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 162 MKIINASIEENTVYITIRIVG---QFISASYDKDNLLI 196
+ I+ A EEN + + I I G + I+ D +L+
Sbjct: 116 ISIMEADTEENIIKVAIEIRGVKTKKIAKLNKGDEILL 153
>gnl|CDD|184029 PRK13399, PRK13399, fructose-1,6-bisphosphate aldolase;
Provisional.
Length = 347
Score = 27.1 bits (60), Expect = 4.5
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 56 ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIV 115
+RGI G +K N+D+ L G + KV+ + S +FDP+ L A + A+
Sbjct: 264 QRGI---KHGVRKVNIDTDIRLAMTG-AIRKVLAEHPS---EFDPRKALKPAMKAMTALC 316
Query: 116 DSFFE 120
FE
Sbjct: 317 KQRFE 321
>gnl|CDD|185477 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 26.6 bits (59), Expect = 6.4
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 152 VKSSLVGIDDMKIINASIEENTV----YITIRI 180
VK+S + + M I+NA I+ + + Y+ I +
Sbjct: 252 VKASTIALKKMPIVNAYIDGDEIVYRNYVDISV 284
>gnl|CDD|161909 TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase,
alpha subunit. The enzyme acetyl-CoA carboxylase
contains a biotin carboxyl carrier protein or domain, a
biotin carboxylase, and a carboxyl transferase. This
model represents the alpha chain of the carboxyl
transferase for cases in which the architecture of the
protein is as in E. coli, in which the
carboxyltransferase portion consists of two
non-identical subnits, alpha and beta.
Length = 316
Score = 26.3 bits (58), Expect = 6.9
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 56 ERGIITLGKGKKKDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNS----- 110
E I +L + +++D E+ + R ++ + I +++ L AR+
Sbjct: 16 EAKIESLRARSRDEDVDLSEEIERLEKRSVELTKKI---FSNLGAWQRLQLARHPDRPYT 72
Query: 111 ---YEAIVDSFFE 120
E I D FFE
Sbjct: 73 LDYIELIFDDFFE 85
>gnl|CDD|179539 PRK03103, PRK03103, DNA polymerase IV; Reviewed.
Length = 409
Score = 26.1 bits (58), Expect = 8.0
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 10/46 (21%)
Query: 51 FSKRDERGIITLGKGKKKDNLDS------INELFPIGTRLNKVMRD 90
F+K++ G+ TL K+++ + + +LF +G+R+ K +R
Sbjct: 158 FAKKNPDGLFTL----DKEDVPADLWPLPVRKLFGVGSRMEKHLRR 199
>gnl|CDD|148010 pfam06148, COG2, COG (conserved oligomeric Golgi) complex
component, COG2. The COG complex comprises eight
proteins COG1-8. The COG complex plays critical roles in
Golgi structure and function. The proposed function of
the complex is to mediate the initial physical contact
between transport vesicles and their membrane targets. A
comparable role in tethering vesicles has been suggested
for at least six additional large multisubunit
complexes, including the exocyst, a complex that
mediates trafficking to the plasma membrane. COG2
structure reveals a six-helix bundle with few conserved
surface features but a general resemblance to recently
determined crystal structures of four different exocyst
subunits. These bundles inCOG2 may act as platforms for
interaction with other trafficing proteins including
SNAREs (soluble N-ethylmaleimide factor attachment
protein receptors) and Rabs.
Length = 133
Score = 26.1 bits (58), Expect = 8.6
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 31/77 (40%)
Query: 97 DFDPKDFLNEARN------------SYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLST 144
DFDP FL+E R +Y ++ S + +L++ Y DF SLST
Sbjct: 12 DFDPDQFLSELRKGVPLESLRDDLRAYLKLLKS-------ELIELINED-YADFV-SLST 62
Query: 145 RKSNEKNVKSSLVGIDD 161
+LVG+D+
Sbjct: 63 ----------NLVGLDE 69
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.140 0.401
Gapped
Lambda K H
0.267 0.0590 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,808,050
Number of extensions: 244697
Number of successful extensions: 528
Number of sequences better than 10.0: 1
Number of HSP's gapped: 527
Number of HSP's successfully gapped: 23
Length of query: 232
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 142
Effective length of database: 4,049,753
Effective search space: 575064926
Effective search space used: 575064926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)