RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780815|ref|YP_003065228.1| hypothetical protein CLIBASIA_03530 [Candidatus Liberibacter asiaticus str. psy62] (232 letters) >d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 182 Score = 104 bits (260), Expect = 8e-24 Identities = 27/163 (16%), Positives = 64/163 (39%), Gaps = 3/163 (1%) Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNS-YEAIVDSFFEGKVHAIE 127 D + + T +++V+ +I+ V FD FL + N ++++ G++ ++ Sbjct: 12 DKVTDLLGGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILK 71 Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 Y + K+ S ++ ID++ + + E + I Q + Sbjct: 72 DWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMVEQGPVLIITFQAQLVMV 131 Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN--WVLIST 228 + ++ DP+ +++ +W R+ NP W L+ Sbjct: 132 VRNPKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRLLDI 174 >d2fxta1 d.17.4.13 (A:234-425) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192 Score = 97.3 bits (242), Expect = 1e-21 Identities = 21/167 (12%), Positives = 57/167 (34%), Gaps = 9/167 (5%) Query: 68 KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAI 126 + + + F T ++V + F + F R I++++ +G V + Sbjct: 22 RKITNKVGGFFA-ETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVL 80 Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQF 184 +K + + K + ++ I ++I++A + ++ + + Q Sbjct: 81 KKWFSEAPFNVYAAQQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQDIPVLVVGCRAQE 140 Query: 185 ISA-SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLI 226 I+ K + + D F R+ + + W ++ Sbjct: 141 INLYRKKKTGEIAAGDEANILMSSYAMVFTRDPEQIDDDETEGWKIL 187 >d1hx1b_ a.7.7.1 (B:) BAG-family molecular chaperon regulator-1, BAG1 {Human (Homo sapiens) [TaxId: 9606]} Length = 112 Score = 26.7 bits (59), Expect = 1.7 Identities = 19/80 (23%), Positives = 38/80 (47%) Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142 +L ++ +++ + F PKD EA + V + E + +E++ + ++F DS Sbjct: 26 QLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEIDTLILPENFKDSR 85 Query: 143 STRKSNEKNVKSSLVGIDDM 162 RK K V++ L D + Sbjct: 86 LKRKGLVKKVQAFLAECDTV 105 >d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 511 Score = 25.0 bits (54), Expect = 6.3 Identities = 11/33 (33%), Positives = 18/33 (54%) Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDI 209 TIR++G +SA + D L + + K ID+ Sbjct: 101 TIRMLGGLLSAYHLSDVLEVGNKTVYLNKAIDL 133 >d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Trichoderma reesei [TaxId: 51453]} Length = 488 Score = 24.6 bits (53), Expect = 6.8 Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 5/53 (9%) Query: 140 DSLST-----RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187 D L T + + I+ A+ + IR +G +SA Sbjct: 54 DGLDTAILMGDADIVNTILQYVPQINFTTTAVANQGSSVFETNIRYLGGLLSA 106 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.140 0.401 Gapped Lambda K H 0.267 0.0629 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 878,609 Number of extensions: 40820 Number of successful extensions: 79 Number of sequences better than 10.0: 1 Number of HSP's gapped: 77 Number of HSP's successfully gapped: 8 Length of query: 232 Length of database: 2,407,596 Length adjustment: 82 Effective length of query: 150 Effective length of database: 1,281,736 Effective search space: 192260400 Effective search space used: 192260400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (23.6 bits)