RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780815|ref|YP_003065228.1| hypothetical protein
CLIBASIA_03530 [Candidatus Liberibacter asiaticus str. psy62]
         (232 letters)



>d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial
           membrane TIMM44 (TIM44), C-terminal domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 182

 Score =  104 bits (260), Expect = 8e-24
 Identities = 27/163 (16%), Positives = 64/163 (39%), Gaps = 3/163 (1%)

Query: 69  DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNS-YEAIVDSFFEGKVHAIE 127
           D +  +       T +++V+ +I+ V   FD   FL +  N     ++++   G++  ++
Sbjct: 12  DKVTDLLGGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILK 71

Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
                  Y      +   K+      S ++ ID++ +    + E    + I    Q +  
Sbjct: 72  DWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMVEQGPVLIITFQAQLVMV 131

Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN--WVLIST 228
             +    ++  DP+   +++ +W   R+    NP   W L+  
Sbjct: 132 VRNPKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRLLDI 174


>d2fxta1 d.17.4.13 (A:234-425) Translocase of inner mitochondrial
           membrane TIMM44 (TIM44), C-terminal domain {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 192

 Score = 97.3 bits (242), Expect = 1e-21
 Identities = 21/167 (12%), Positives = 57/167 (34%), Gaps = 9/167 (5%)

Query: 68  KDNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYE-AIVDSFFEGKVHAI 126
           +   + +   F   T  ++V      +   F  + F    R      I++++ +G V  +
Sbjct: 22  RKITNKVGGFFA-ETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVL 80

Query: 127 EKLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQF 184
           +K      +  +       K  +      ++ I  ++I++A +   ++   + +    Q 
Sbjct: 81  KKWFSEAPFNVYAAQQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQDIPVLVVGCRAQE 140

Query: 185 ISA-SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN----WVLI 226
           I+     K   + + D            F R+    + +    W ++
Sbjct: 141 INLYRKKKTGEIAAGDEANILMSSYAMVFTRDPEQIDDDETEGWKIL 187


>d1hx1b_ a.7.7.1 (B:) BAG-family molecular chaperon regulator-1,
           BAG1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 112

 Score = 26.7 bits (59), Expect = 1.7
 Identities = 19/80 (23%), Positives = 38/80 (47%)

Query: 83  RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
           +L ++ +++  +   F PKD   EA    +  V +  E  +  +E++    + ++F DS 
Sbjct: 26  QLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEIDTLILPENFKDSR 85

Query: 143 STRKSNEKNVKSSLVGIDDM 162
             RK   K V++ L   D +
Sbjct: 86  LKRKGLVKKVQAFLAECDTV 105


>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
           domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 511

 Score = 25.0 bits (54), Expect = 6.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 177 TIRIVGQFISASYDKDNLLISSDPEIFGKVIDI 209
           TIR++G  +SA +  D L + +      K ID+
Sbjct: 101 TIRMLGGLLSAYHLSDVLEVGNKTVYLNKAIDL 133


>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
           domain {Trichoderma reesei [TaxId: 51453]}
          Length = 488

 Score = 24.6 bits (53), Expect = 6.8
 Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 5/53 (9%)

Query: 140 DSLST-----RKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
           D L T            +   +  I+      A+   +     IR +G  +SA
Sbjct: 54  DGLDTAILMGDADIVNTILQYVPQINFTTTAVANQGSSVFETNIRYLGGLLSA 106


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.140    0.401 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 878,609
Number of extensions: 40820
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 8
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)