Query         gi|254780816|ref|YP_003065229.1| hypothetical protein CLIBASIA_03535 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 63
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 13:26:29 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780816.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1vq2_A DCMP deaminase, deoxyc  13.9      42  0.0012   15.8  -0.1   14   49-62      9-22  (56)
  2 >1i7n_A Synapsin II; synapse,    9.1 1.1E+02  0.0032   13.4   0.7   43   10-52     18-65  (133)
  3 >3hhw_K Nucleoprotein; protein   8.4      48  0.0014   15.5  -1.4   28   25-52     10-37  (131)
  4 >2v6e_A Protelemorase; hairpin   6.4 1.5E+02  0.0045   12.6   0.4   10   48-57     82-91  (125)
  5 >3ebh_A PFA-M1, M1 family amin   6.0 1.3E+02  0.0038   13.0  -0.2   30   26-55     46-79  (104)
  6 >1vcl_A Hemolytic lectin CEL-I   5.7 2.2E+02  0.0064   11.7   2.5   22   34-55     92-116 (128)
  7 >2d1s_A Luciferase, luciferin    5.4      92  0.0027   13.8  -1.2   28   21-48      9-37  (99)
  8 >3ga2_A Endonuclease V; alpha-   5.1 2.4E+02   0.007   11.5   0.9   11   26-36    158-168 (219)
  9 >1hll_A Alpha-2A adrenergic re   5.1      39  0.0012   15.9  -3.3   11   14-24      2-12  (32)
 10 >3ei3_A DNA damage-binding pro   5.0 2.1E+02  0.0063   11.8   0.5   15   20-34     39-53  (54)

No 1  
>>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} (A:46-101)
Probab=13.88  E-value=42  Score=15.81  Aligned_cols=14  Identities=43%  Similarity=0.767  Sum_probs=9.8

Q ss_pred             HHHHHHCCCCCCCC
Q ss_conf             34565314210024
Q gi|254780816|r   49 KDQRWKKNKSKHLL   62 (63)
Q Consensus        49 kdqrwkknkskhll   62 (63)
                      ..+.|-+||+||-.
T Consensus         9 a~~gwl~nk~~~ai   22 (56)
T 1vq2_A            9 AEQGWLLNKPKHAI   22 (56)
T ss_dssp             HHHTCEEEC-----
T ss_pred             HHHHHHCCCCHHHH
T ss_conf             22322203103344


No 2  
>>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} (A:1-133)
Probab=9.14  E-value=1.1e+02  Score=13.40  Aligned_cols=43  Identities=19%  Similarity=0.346  Sum_probs=28.4

Q ss_pred             EEEECCEEEEEEEEEE-----EEEEEEEECCEEEEEEEEEEEHHHHHH
Q ss_conf             9961220335566765-----457889844278999999741023456
Q gi|254780816|r   10 YFQRKSIFNLFKISIA-----TIPVYISIGKACMIQIQILETEQKDQR   52 (63)
Q Consensus        10 yfqrksifnlfkisia-----tipvyisigkacmiqiqileteqkdqr   52 (63)
                      ||..|.++.-+.|-+.     .|.+--.-...||+.+|++....|.-|
T Consensus        18 yFrgkk~~g~y~IrVEQaefsei~l~a~s~~g~~Vd~~~~r~gtkvvR   65 (133)
T 1i7n_A           18 CFRGKKILGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVVR   65 (133)
T ss_dssp             HHTTCEETTTEEEEEEEECGGGEEEEEETTSCEEEEEEECSSSSSEEE
T ss_pred             HHCCCEECCCCCEEEEHHHHCCCEEEEECCCCEEEEHHHHHCCCEEEE
T ss_conf             727570115542043211102000577538633655155627736643


No 3  
>>3hhw_K Nucleoprotein; protein complex, template, replication, negative strand RNA virus, chaperone, cytoplasm, phosphoprotein; HET: TAR; 2.70A {Vesicular stomatitis indiana virus} PDB: 2qvj_A* 3hhz_K 2gic_A (K:26-44,K:103-214)
Probab=8.39  E-value=48  Score=15.46  Aligned_cols=28  Identities=21%  Similarity=0.348  Sum_probs=22.6

Q ss_pred             EEEEEEEEECCEEEEEEEEEEEHHHHHH
Q ss_conf             5457889844278999999741023456
Q gi|254780816|r   25 ATIPVYISIGKACMIQIQILETEQKDQR   52 (63)
Q Consensus        25 atipvyisigkacmiqiqileteqkdqr   52 (63)
                      ..||.||...--.|+.|++.+++-.|..
T Consensus        10 ~~~~~~~~~~P~sLv~Vk~~~~~~~d~~   37 (131)
T 3hhw_K           10 KEIPLYINTTIFDLVSLKALDGVLPDGV   37 (131)
T ss_dssp             SCCCEEECCSSCCSCEEECCSSCSCCCC
T ss_pred             CCCCCEEECCCCCEEEEEECCCCCCCCC
T ss_conf             9899655257221379982256577777


No 4  
>>2v6e_A Protelemorase; hairpin telomere, hydrolase, resolvase, protelomerase, DNA distortion; 3.20A {Klebsiella phage PHIKO2} (A:250-297,A:383-459)
Probab=6.41  E-value=1.5e+02  Score=12.62  Aligned_cols=10  Identities=40%  Similarity=0.850  Sum_probs=6.8

Q ss_pred             HHHHHHHCCC
Q ss_conf             2345653142
Q gi|254780816|r   48 QKDQRWKKNK   57 (63)
Q Consensus        48 qkdqrwkknk   57 (63)
                      +.|.||||-.
T Consensus        82 ~~DpRWKk~D   91 (125)
T 2v6e_A           82 RVDPRWKNVD   91 (125)
T ss_dssp             TTSGGGTTSC
T ss_pred             CCCHHHCCCC
T ss_conf             5650212461


No 5  
>>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, cytoplasm, metal-binding, metalloprotease, protease, zinc, hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* (A:448-551)
Probab=6.01  E-value=1.3e+02  Score=13.03  Aligned_cols=30  Identities=20%  Similarity=0.307  Sum_probs=22.0

Q ss_pred             EEEEEEEE----CCEEEEEEEEEEEHHHHHHHHC
Q ss_conf             45788984----4278999999741023456531
Q gi|254780816|r   26 TIPVYISI----GKACMIQIQILETEQKDQRWKK   55 (63)
Q Consensus        26 tipvyisi----gkacmiqiqileteqkdqrwkk   55 (63)
                      -||+-+++    |+.-.++..+|+-.++.|.|.-
T Consensus        46 ~IPi~~~L~~~~G~~~~~~~~vl~l~~~~q~f~f   79 (104)
T 3ebh_A           46 FIPISVGLINPENGKEMISQTTLELTKESDTFVF   79 (104)
T ss_dssp             CEEEEEEEECTTTCCBCSCCEEEEECSSEEEEEE
T ss_pred             EEEEEEEEEECCCCCCCCCCEEEEEEECCCEEEC
T ss_conf             8999999985688864431038996023217852


No 6  
>>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination, pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria echinata} (A:286-413)
Probab=5.65  E-value=2.2e+02  Score=11.71  Aligned_cols=22  Identities=36%  Similarity=0.640  Sum_probs=16.7

Q ss_pred             CCEEEEEEEEEEEHHHHH---HHHC
Q ss_conf             427899999974102345---6531
Q gi|254780816|r   34 GKACMIQIQILETEQKDQ---RWKK   55 (63)
Q Consensus        34 gkacmiqiqileteqkdq---rwkk   55 (63)
                      -..||-|..+-.+|++..   ||..
T Consensus        92 ~rgcmwql~v~t~e~~a~n~m~w~p  116 (128)
T 1vcl_A           92 TRGCMWQLAIETTEVKSGDLLVWNP  116 (128)
T ss_dssp             SSEEEEEEEEEEEETTTTEEEEEEC
T ss_pred             HHHHEEEEEEEEEEEECCCCCCCCH
T ss_conf             3221001102355641477776663


No 7  
>>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* (A:1-19,A:363-442)
Probab=5.37  E-value=92  Score=13.84  Aligned_cols=28  Identities=18%  Similarity=0.519  Sum_probs=21.1

Q ss_pred             EEEEEEEEEEEEECCEE-EEEEEEEEEHH
Q ss_conf             66765457889844278-99999974102
Q gi|254780816|r   21 KISIATIPVYISIGKAC-MIQIQILETEQ   48 (63)
Q Consensus        21 kisiatipvyisigkac-miqiqileteq   48 (63)
                      .|....-|.|-|+|+++ .+++.|+..+.
T Consensus         9 ~~~~~~~~~~~SvG~p~pg~~i~Ivd~d~   37 (99)
T 2d1s_A            9 NIVVGPKPFYPASGKVVPLFKAKVIDLDT   37 (99)
T ss_dssp             TSEECCCCSSCCCBEECTTCEEEEECTTT
T ss_pred             CCEECCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf             50579899998754066787799998999


No 8  
>>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis} (A:28-246)
Probab=5.14  E-value=2.4e+02  Score=11.52  Aligned_cols=11  Identities=27%  Similarity=0.691  Sum_probs=7.0

Q ss_pred             EEEEEEEECCE
Q ss_conf             45788984427
Q gi|254780816|r   26 TIPVYISIGKA   36 (63)
Q Consensus        26 tipvyisigka   36 (63)
                      .-|+|+|.|..
T Consensus       158 ~kPiyVS~Gh~  168 (219)
T 3ga2_A          158 VKPIFLSCGNY  168 (219)
T ss_dssp             SCCEEEEEEES
T ss_pred             CCCEEEECCCC
T ss_conf             88999828978


No 9  
>>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} (A:)
Probab=5.07  E-value=39  Score=15.94  Aligned_cols=11  Identities=45%  Similarity=0.588  Sum_probs=7.3

Q ss_pred             CCEEEEEEEEE
Q ss_conf             22033556676
Q gi|254780816|r   14 KSIFNLFKISI   24 (63)
Q Consensus        14 ksifnlfkisi   24 (63)
                      -||+||.-||+
T Consensus         2 ASI~~Lc~Isi   12 (32)
T 1hll_A            2 SSIVHLCAISL   12 (32)
T ss_dssp             HHHHHHHHHHT
T ss_pred             CCEEEEEEEHH
T ss_conf             42231322105


No 10 
>>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 2b5n_A (A:375-412,A:726-741)
Probab=5.04  E-value=2.1e+02  Score=11.77  Aligned_cols=15  Identities=40%  Similarity=0.563  Sum_probs=10.6

Q ss_pred             EEEEEEEEEEEEEEC
Q ss_conf             566765457889844
Q gi|254780816|r   20 FKISIATIPVYISIG   34 (63)
Q Consensus        20 fkisiatipvyisig   34 (63)
                      -|..|.|.|.|-|-.
T Consensus        39 ~~~~~~~~~~~~~~~   53 (54)
T 3ei3_A           39 QKLHIRTVPLYESPR   53 (54)
T ss_dssp             SSEEEEEEECSSEEE
T ss_pred             CCEEEEEEECCCCCE
T ss_conf             760679996589711


Done!