Query gi|254780816|ref|YP_003065229.1| hypothetical protein CLIBASIA_03535 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 63 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 13:26:29 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780816.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1vq2_A DCMP deaminase, deoxyc 13.9 42 0.0012 15.8 -0.1 14 49-62 9-22 (56) 2 >1i7n_A Synapsin II; synapse, 9.1 1.1E+02 0.0032 13.4 0.7 43 10-52 18-65 (133) 3 >3hhw_K Nucleoprotein; protein 8.4 48 0.0014 15.5 -1.4 28 25-52 10-37 (131) 4 >2v6e_A Protelemorase; hairpin 6.4 1.5E+02 0.0045 12.6 0.4 10 48-57 82-91 (125) 5 >3ebh_A PFA-M1, M1 family amin 6.0 1.3E+02 0.0038 13.0 -0.2 30 26-55 46-79 (104) 6 >1vcl_A Hemolytic lectin CEL-I 5.7 2.2E+02 0.0064 11.7 2.5 22 34-55 92-116 (128) 7 >2d1s_A Luciferase, luciferin 5.4 92 0.0027 13.8 -1.2 28 21-48 9-37 (99) 8 >3ga2_A Endonuclease V; alpha- 5.1 2.4E+02 0.007 11.5 0.9 11 26-36 158-168 (219) 9 >1hll_A Alpha-2A adrenergic re 5.1 39 0.0012 15.9 -3.3 11 14-24 2-12 (32) 10 >3ei3_A DNA damage-binding pro 5.0 2.1E+02 0.0063 11.8 0.5 15 20-34 39-53 (54) No 1 >>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} (A:46-101) Probab=13.88 E-value=42 Score=15.81 Aligned_cols=14 Identities=43% Similarity=0.767 Sum_probs=9.8 Q ss_pred HHHHHHCCCCCCCC Q ss_conf 34565314210024 Q gi|254780816|r 49 KDQRWKKNKSKHLL 62 (63) Q Consensus 49 kdqrwkknkskhll 62 (63) ..+.|-+||+||-. T Consensus 9 a~~gwl~nk~~~ai 22 (56) T 1vq2_A 9 AEQGWLLNKPKHAI 22 (56) T ss_dssp HHHTCEEEC----- T ss_pred HHHHHHCCCCHHHH T ss_conf 22322203103344 No 2 >>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} (A:1-133) Probab=9.14 E-value=1.1e+02 Score=13.40 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=28.4 Q ss_pred EEEECCEEEEEEEEEE-----EEEEEEEECCEEEEEEEEEEEHHHHHH Q ss_conf 9961220335566765-----457889844278999999741023456 Q gi|254780816|r 10 YFQRKSIFNLFKISIA-----TIPVYISIGKACMIQIQILETEQKDQR 52 (63) Q Consensus 10 yfqrksifnlfkisia-----tipvyisigkacmiqiqileteqkdqr 52 (63) ||..|.++.-+.|-+. .|.+--.-...||+.+|++....|.-| T Consensus 18 yFrgkk~~g~y~IrVEQaefsei~l~a~s~~g~~Vd~~~~r~gtkvvR 65 (133) T 1i7n_A 18 CFRGKKILGDYDIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVVR 65 (133) T ss_dssp HHTTCEETTTEEEEEEEECGGGEEEEEETTSCEEEEEEECSSSSSEEE T ss_pred HHCCCEECCCCCEEEEHHHHCCCEEEEECCCCEEEEHHHHHCCCEEEE T ss_conf 727570115542043211102000577538633655155627736643 No 3 >>3hhw_K Nucleoprotein; protein complex, template, replication, negative strand RNA virus, chaperone, cytoplasm, phosphoprotein; HET: TAR; 2.70A {Vesicular stomatitis indiana virus} PDB: 2qvj_A* 3hhz_K 2gic_A (K:26-44,K:103-214) Probab=8.39 E-value=48 Score=15.46 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=22.6 Q ss_pred EEEEEEEEECCEEEEEEEEEEEHHHHHH Q ss_conf 5457889844278999999741023456 Q gi|254780816|r 25 ATIPVYISIGKACMIQIQILETEQKDQR 52 (63) Q Consensus 25 atipvyisigkacmiqiqileteqkdqr 52 (63) ..||.||...--.|+.|++.+++-.|.. T Consensus 10 ~~~~~~~~~~P~sLv~Vk~~~~~~~d~~ 37 (131) T 3hhw_K 10 KEIPLYINTTIFDLVSLKALDGVLPDGV 37 (131) T ss_dssp SCCCEEECCSSCCSCEEECCSSCSCCCC T ss_pred CCCCCEEECCCCCEEEEEECCCCCCCCC T ss_conf 9899655257221379982256577777 No 4 >>2v6e_A Protelemorase; hairpin telomere, hydrolase, resolvase, protelomerase, DNA distortion; 3.20A {Klebsiella phage PHIKO2} (A:250-297,A:383-459) Probab=6.41 E-value=1.5e+02 Score=12.62 Aligned_cols=10 Identities=40% Similarity=0.850 Sum_probs=6.8 Q ss_pred HHHHHHHCCC Q ss_conf 2345653142 Q gi|254780816|r 48 QKDQRWKKNK 57 (63) Q Consensus 48 qkdqrwkknk 57 (63) +.|.||||-. T Consensus 82 ~~DpRWKk~D 91 (125) T 2v6e_A 82 RVDPRWKNVD 91 (125) T ss_dssp TTSGGGTTSC T ss_pred CCCHHHCCCC T ss_conf 5650212461 No 5 >>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, cytoplasm, metal-binding, metalloprotease, protease, zinc, hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* (A:448-551) Probab=6.01 E-value=1.3e+02 Score=13.03 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=22.0 Q ss_pred EEEEEEEE----CCEEEEEEEEEEEHHHHHHHHC Q ss_conf 45788984----4278999999741023456531 Q gi|254780816|r 26 TIPVYISI----GKACMIQIQILETEQKDQRWKK 55 (63) Q Consensus 26 tipvyisi----gkacmiqiqileteqkdqrwkk 55 (63) -||+-+++ |+.-.++..+|+-.++.|.|.- T Consensus 46 ~IPi~~~L~~~~G~~~~~~~~vl~l~~~~q~f~f 79 (104) T 3ebh_A 46 FIPISVGLINPENGKEMISQTTLELTKESDTFVF 79 (104) T ss_dssp CEEEEEEEECTTTCCBCSCCEEEEECSSEEEEEE T ss_pred EEEEEEEEEECCCCCCCCCCEEEEEEECCCEEEC T ss_conf 8999999985688864431038996023217852 No 6 >>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination, pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria echinata} (A:286-413) Probab=5.65 E-value=2.2e+02 Score=11.71 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=16.7 Q ss_pred CCEEEEEEEEEEEHHHHH---HHHC Q ss_conf 427899999974102345---6531 Q gi|254780816|r 34 GKACMIQIQILETEQKDQ---RWKK 55 (63) Q Consensus 34 gkacmiqiqileteqkdq---rwkk 55 (63) -..||-|..+-.+|++.. ||.. T Consensus 92 ~rgcmwql~v~t~e~~a~n~m~w~p 116 (128) T 1vcl_A 92 TRGCMWQLAIETTEVKSGDLLVWNP 116 (128) T ss_dssp SSEEEEEEEEEEEETTTTEEEEEEC T ss_pred HHHHEEEEEEEEEEEECCCCCCCCH T ss_conf 3221001102355641477776663 No 7 >>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* (A:1-19,A:363-442) Probab=5.37 E-value=92 Score=13.84 Aligned_cols=28 Identities=18% Similarity=0.519 Sum_probs=21.1 Q ss_pred EEEEEEEEEEEEECCEE-EEEEEEEEEHH Q ss_conf 66765457889844278-99999974102 Q gi|254780816|r 21 KISIATIPVYISIGKAC-MIQIQILETEQ 48 (63) Q Consensus 21 kisiatipvyisigkac-miqiqileteq 48 (63) .|....-|.|-|+|+++ .+++.|+..+. T Consensus 9 ~~~~~~~~~~~SvG~p~pg~~i~Ivd~d~ 37 (99) T 2d1s_A 9 NIVVGPKPFYPASGKVVPLFKAKVIDLDT 37 (99) T ss_dssp TSEECCCCSSCCCBEECTTCEEEEECTTT T ss_pred CCEECCCCCCCCCCCCCCCCEEEEEECCC T ss_conf 50579899998754066787799998999 No 8 >>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis} (A:28-246) Probab=5.14 E-value=2.4e+02 Score=11.52 Aligned_cols=11 Identities=27% Similarity=0.691 Sum_probs=7.0 Q ss_pred EEEEEEEECCE Q ss_conf 45788984427 Q gi|254780816|r 26 TIPVYISIGKA 36 (63) Q Consensus 26 tipvyisigka 36 (63) .-|+|+|.|.. T Consensus 158 ~kPiyVS~Gh~ 168 (219) T 3ga2_A 158 VKPIFLSCGNY 168 (219) T ss_dssp SCCEEEEEEES T ss_pred CCCEEEECCCC T ss_conf 88999828978 No 9 >>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} (A:) Probab=5.07 E-value=39 Score=15.94 Aligned_cols=11 Identities=45% Similarity=0.588 Sum_probs=7.3 Q ss_pred CCEEEEEEEEE Q ss_conf 22033556676 Q gi|254780816|r 14 KSIFNLFKISI 24 (63) Q Consensus 14 ksifnlfkisi 24 (63) -||+||.-||+ T Consensus 2 ASI~~Lc~Isi 12 (32) T 1hll_A 2 SSIVHLCAISL 12 (32) T ss_dssp HHHHHHHHHHT T ss_pred CCEEEEEEEHH T ss_conf 42231322105 No 10 >>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 2b5n_A (A:375-412,A:726-741) Probab=5.04 E-value=2.1e+02 Score=11.77 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=10.6 Q ss_pred EEEEEEEEEEEEEEC Q ss_conf 566765457889844 Q gi|254780816|r 20 FKISIATIPVYISIG 34 (63) Q Consensus 20 fkisiatipvyisig 34 (63) -|..|.|.|.|-|-. T Consensus 39 ~~~~~~~~~~~~~~~ 53 (54) T 3ei3_A 39 QKLHIRTVPLYESPR 53 (54) T ss_dssp SSEEEEEEECSSEEE T ss_pred CCEEEEEEECCCCCE T ss_conf 760679996589711 Done!